Psyllid ID: psy4869
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2435 | 2.2.26 [Sep-21-2011] | |||||||
| Q6PE01 | 358 | U5 small nuclear ribonucl | yes | N/A | 0.104 | 0.709 | 0.607 | 1e-121 | |
| Q2HJH6 | 358 | U5 small nuclear ribonucl | yes | N/A | 0.104 | 0.709 | 0.607 | 1e-121 | |
| Q96DI7 | 357 | U5 small nuclear ribonucl | yes | N/A | 0.104 | 0.711 | 0.610 | 1e-121 | |
| Q5RF51 | 357 | U5 small nuclear ribonucl | yes | N/A | 0.104 | 0.711 | 0.604 | 1e-119 | |
| Q9UNX4 | 943 | WD repeat-containing prot | no | N/A | 0.255 | 0.659 | 0.377 | 1e-118 | |
| Q8BHB4 | 942 | WD repeat-containing prot | no | N/A | 0.257 | 0.665 | 0.371 | 1e-115 | |
| Q55AR8 | 355 | U5 small nuclear ribonucl | yes | N/A | 0.125 | 0.859 | 0.516 | 5e-92 | |
| O94620 | 340 | Pre-mRNA-splicing factor | yes | N/A | 0.124 | 0.894 | 0.465 | 3e-79 | |
| Q54S79 | 942 | WD repeat-containing prot | no | N/A | 0.143 | 0.370 | 0.419 | 1e-77 | |
| Q12220 | 943 | U3 small nucleolar RNA-as | yes | N/A | 0.141 | 0.364 | 0.394 | 5e-71 |
| >sp|Q6PE01|SNR40_MOUSE U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 189/311 (60%), Positives = 250/311 (80%)
Query: 341 VQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV 400
+Q R S+L APIMLL GH GE++C K+HP+G +AS+G+DR I +W+VYG+C+N
Sbjct: 46 LQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYAT 105
Query: 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
+ GH+GAVM+L ++TDG +F+ STD+T+AVWD E G+R+K++KGH++FVNSC P RRG
Sbjct: 106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP 165
Query: 461 LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRT 520
L+ +GSDD TVK+WD RKK + NTYQV +V FNDT++ +++GGIDNDIK+WDLR
Sbjct: 166 QLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 225
Query: 521 NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF 580
N + +RGH+D+VTGLSLS +GSY+LSNAMDNTVR+WD+RP+ P ERCVK+ G+ HNF
Sbjct: 226 NKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 285
Query: 581 EKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640
EKNLLRC+WS G + AGSAD+ VY+WDTT+RR+ YKLPGH GS+N+V FHP EPII+S
Sbjct: 286 EKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILS 345
Query: 641 ASSDKTIYLGE 651
ASSDK +Y+GE
Sbjct: 346 ASSDKRLYMGE 356
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Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. Mus musculus (taxid: 10090) |
| >sp|Q2HJH6|SNR40_BOVIN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 189/311 (60%), Positives = 250/311 (80%)
Query: 341 VQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV 400
+Q R S+L APIMLL GH GE++C K+HP+G +AS+G+DR I +W+VYG+C+N
Sbjct: 46 LQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYAT 105
Query: 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
+ GH+GAVM+L ++TDG +F+ STD+T+AVWD E G+R+K++KGH++FVNSC P RRG
Sbjct: 106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP 165
Query: 461 LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRT 520
L+ +GSDD TVK+WD RKK + NTYQV +V FNDT++ +++GGIDNDIK+WDLR
Sbjct: 166 QLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 225
Query: 521 NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF 580
N + +RGH+D+VTGLSLS +GSY+LSNAMDNTVR+WD+RP+ P ERCV++ G+ HNF
Sbjct: 226 NKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNF 285
Query: 581 EKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640
EKNLLRC+WS G + AGSAD+ VY+WDTT+RRI YKLPGH GS+N+V FHP EPII+S
Sbjct: 286 EKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILS 345
Query: 641 ASSDKTIYLGE 651
ASSDK +Y+GE
Sbjct: 346 ASSDKRLYMGE 356
|
Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. Bos taurus (taxid: 9913) |
| >sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust.
Identities = 190/311 (61%), Positives = 250/311 (80%)
Query: 341 VQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV 400
+Q R S+L APIMLL GH GE++C K+HP+G +AS+G+DR I +W+VYG+C+N
Sbjct: 45 LQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYAT 104
Query: 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
+ GH+GAVM+L ++TDG +F+ STD+T+AVWD E G+R+K++KGH++FVNSC P RRG
Sbjct: 105 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP 164
Query: 461 LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRT 520
L+ +GSDD TVK+WD RKK + NTYQV +V FNDT++ +++GGIDNDIK+WDLR
Sbjct: 165 QLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 224
Query: 521 NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF 580
N + +RGH+D+VTGLSLS +GSY+LSNAMDNTVR+WD+RP+ P ERCVK+ G+ HNF
Sbjct: 225 NKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 284
Query: 581 EKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640
EKNLLRC+WS G + AGSAD+ VY+WDTT+RRI YKLPGH GS+N+V FHP EPII+S
Sbjct: 285 EKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIIS 344
Query: 641 ASSDKTIYLGE 651
ASSDK +Y+GE
Sbjct: 345 ASSDKRLYMGE 355
|
Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. Homo sapiens (taxid: 9606) |
| >sp|Q5RF51|SNR40_PONAB U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust.
Identities = 188/311 (60%), Positives = 248/311 (79%)
Query: 341 VQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV 400
+Q R S+L APIMLL GH GE++C K+HP+G +AS+G+DR I +W+VYG+C N
Sbjct: 45 LQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYAT 104
Query: 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
+ G++GAVM+L ++TDG +F+ STD+T+AVWD E G+R+K++KGH++FVNSC P RRG
Sbjct: 105 LKGYSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP 164
Query: 461 LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRT 520
L+ +GSDD TVK+WD RKK + NTYQV +V FNDT++ +++GGIDNDIK+WDLR
Sbjct: 165 QLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 224
Query: 521 NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF 580
N + +RGH+D+VTGLSLS +GSY+LSNAMDNTVR+WD+RP+ P ERCVK+ G+ HNF
Sbjct: 225 NKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 284
Query: 581 EKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640
EKNLLRC+WS G + AGSAD+ V +WDTT+RRI YKLPGH GS+N+V FHP EPII+S
Sbjct: 285 EKNLLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIIS 344
Query: 641 ASSDKTIYLGE 651
ASSDK +Y+GE
Sbjct: 345 ASSDKRLYMGE 355
|
Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. Pongo abelii (taxid: 9601) |
| >sp|Q9UNX4|WDR3_HUMAN WD repeat-containing protein 3 OS=Homo sapiens GN=WDR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 271/717 (37%), Positives = 388/717 (54%), Gaps = 95/717 (13%)
Query: 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMS 574
+WDLR + L+G VT L SPDG ++ D ++RI+ + + GE V +
Sbjct: 49 IWDLRKGEKILILQGLKQEVTCLCPSPDGLHLAVGYEDGSIRIFSL---LSGEGNV-TFN 104
Query: 575 GHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPK 634
GH+ + + G + +GS D + +WD Y+L GH ++ F +
Sbjct: 105 GHK----AAITTLKYDQLGGRLASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLRE 160
Query: 635 EPIIMSASSDKTI-YLGESPLHCDKA---------GSILRSGKGRVHTMVNDKHRQILCC 684
+ +++++ D + + HC K G +L S + R+ T +D +
Sbjct: 161 KNLLVTSGKDTMVKWWDLDTQHCFKTMVGHRTEVWGLVLLSEEKRLITGASDSELR---- 216
Query: 685 HGNDNVVDLFYFCTKDESSTRCRKRLR--------KLKKK----EKYESP----LHCDKA 728
V D+ Y ++ K+++ L+ + E E+P L C KA
Sbjct: 217 -----VWDIAYLQEIEDPEEPDPKKIKGSSPGIQDTLEAEDGAFETDEAPEDRILSCRKA 271
Query: 729 GSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKK 788
GSI+R G+ RV + DK +IL CHG D+V++LF C L KKE +
Sbjct: 272 GSIMREGRDRVVNLAVDKTGRILACHGTDSVLELF--CI--------------LSKKEIQ 315
Query: 789 LQEEQMEVVEENPVDPDDTEGGKGKPE------LVDVVKRLPTIKTASKTGKIKSVDVIL 842
+ ++ ++G + PE L D ++R+ IKT++K IKS D+I
Sbjct: 316 KKMDKKMKKARKKAKLHSSKGEEEDPEVNVEMSLQDEIQRVTNIKTSAK---IKSFDLIH 372
Query: 843 GGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVS 902
GE++ LL NN +EL+SL+ T I GH S+VR L+FSSDN+A++S
Sbjct: 373 SPHGELKAVFLLQNNLVELYSLNPSLPTPQPVRTSRITIGGHRSDVRTLSFSSDNIAVLS 432
Query: 903 ACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILED 962
A A +KIWNR +L C+RT+ T YAL FVPGDR V++GTK G+L + D+ +G +LE
Sbjct: 433 AAADSIKIWNRSTLQCIRTM-TCEYALCSFFVPGDRQVVIGTKTGKLQLYDLASGNLLET 491
Query: 963 IPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDV 1022
I AH LWS+++ PDQ VTGG DKSVK W ELV KD
Sbjct: 492 IDAHDGALWSMSLSPDQRG----------FVTGGADKSVKFWDFELV----------KDE 531
Query: 1023 SRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK 1082
+ + K LS+ TRTL+L+E VLC SP+ KLLAVSLLD TVKIF++DT KFF+SLYGHK
Sbjct: 532 NSTQKRLSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKIFYVDTLKFFLSLYGHK 591
Query: 1083 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT 1142
LPV+ +D+S+D LIATGS DR VK+WGLD+GDCHKSL AH+DSV + FVPK+H FFT
Sbjct: 592 LPVICMDISHDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLQFVPKSHLFFTA 651
Query: 1143 SKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
KD ++KQWDAD FE I TL GH + L +S + + S D+++++W
Sbjct: 652 GKDHKIKQWDADKFEHIQTLE------GHHQEIWCLAVSPSGDYVVSSSHDKSLRLW 702
|
Homo sapiens (taxid: 9606) |
| >sp|Q8BHB4|WDR3_MOUSE WD repeat-containing protein 3 OS=Mus musculus GN=Wdr3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 264/711 (37%), Positives = 378/711 (53%), Gaps = 84/711 (11%)
Query: 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMS 574
+WDLR + L+G+ VT L SPDG ++ D +RI+ + + GE + +
Sbjct: 49 IWDLRKGEKILILQGNKQEVTCLCPSPDGLHLAVGYEDGAIRIFSL---LSGEGNI-TFN 104
Query: 575 GHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPK 634
GH+ + + G + +GS D V IWD Y+L GH +V F +
Sbjct: 105 GHK----AAVTSLKYDQLGGRLASGSKDTDVIIWDVINESGLYRLKGHKDAVTQALFLRE 160
Query: 635 EPIIMSASSDKTI-YLGESPLHCDKA---------GSILRSGKGRVHTMVNDKHRQILCC 684
+++++ D + + HC K G +L S + R+ T D +
Sbjct: 161 RNLLVTSGKDTMVKWWDLDNQHCFKTMVGHRTEVWGLVLVSEEKRLITGAADSELR---- 216
Query: 685 HGNDNVVDLFYFCTKDESSTRCRKRLRKL---------------KKKEKYESP-LHCDKA 728
D+ Y D+ K++++ EK E L C KA
Sbjct: 217 -----AWDIDYLQEIDDPEEPEPKKIKECPGIQDTPESEDSTLEADDEKSEDRILSCSKA 271
Query: 729 GSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKK 788
GSI+R G+ RV + DK +IL CHG D+V+++F +K E ++KK K
Sbjct: 272 GSIMREGRDRVVNLAVDKTGRILACHGTDSVLEVFCILSKAE-----------VQKKMDK 320
Query: 789 LQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEI 848
++ + N + ++ L D + R+ IKT++ KIKS D+I GE+
Sbjct: 321 KLKKARKKARLNSANEEEDPETSVSMTLQDEILRVAKIKTSA---KIKSFDLIHSPQGEL 377
Query: 849 RLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQV 908
+ LL NN +EL+SL+ I GH S+VR L+FSSDN+A++SA A +
Sbjct: 378 KAVFLLQNNLVELYSLNASLPAPQPVRTSRITIGGHRSDVRTLSFSSDNIAVLSAAADSI 437
Query: 909 KIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQ 968
KIWNR +L C+RT+ YAL FVPGDR V++GTK G L + D+ +G +LE I AH
Sbjct: 438 KIWNRSTLQCIRTMPC-EYALCSFFVPGDRQVVIGTKTGNLQLYDLASGTLLETIAAHDG 496
Query: 969 ELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKV 1028
LWS+++ PDQ VTGG DK+VK W ELV+ D + + K
Sbjct: 497 ALWSMSLSPDQRG----------FVTGGADKAVKFWDFELVT----------DKNSTQKR 536
Query: 1029 LSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSL 1088
LS+ TRTL+L+E VLC SP+ KLLAVSLLD TVK+F++DT KFF+SLYGHKLPVL +
Sbjct: 537 LSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKVFYVDTLKFFLSLYGHKLPVLCM 596
Query: 1089 DMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRV 1148
D+S+D LIATGS DR VK+WGLD+GDCH+SL AH+DSV + FVPK+H FFT KD ++
Sbjct: 597 DISHDGALIATGSADRNVKIWGLDFGDCHRSLFAHDDSVMYLRFVPKSHLFFTAGKDHKI 656
Query: 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
KQWDAD FE I TL GH + L +S + + S D+++++W
Sbjct: 657 KQWDADKFEHIQTLE------GHHQEIWCLAVSPSGDYVVSASHDKSLRLW 701
|
Mus musculus (taxid: 10090) |
| >sp|Q55AR8|SNR40_DICDI U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum GN=snrnp40 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 341 bits (874), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 158/306 (51%), Positives = 217/306 (70%), Gaps = 1/306 (0%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTG 406
RTS L PIM L GH GEI+ K++ G +AS G D++IF+W+VYGEC N V+ GH G
Sbjct: 47 RTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKGHKG 106
Query: 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASG 466
+++L +STD I+T TD+++ VWD KG+ IK+++ HS VNSC P RRG L+ASG
Sbjct: 107 TILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLVASG 166
Query: 467 SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNS-VVQ 525
SDD + +++D R K + Y VTSV F+D ++ ++TGGIDN I++WD+R +
Sbjct: 167 SDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQEDPLY 226
Query: 526 KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLL 585
L H DT+T S+S DG+Y+LSN+MDN+ +IWDIRPY P R +K +G Q+NFEKNL+
Sbjct: 227 TLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEKNLI 286
Query: 586 RCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645
+ +WS+ G + GS+D+ VYIWDT T+++ Y LPGH+G+VN+V FHP EPII S SSDK
Sbjct: 287 KSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCSSDK 346
Query: 646 TIYLGE 651
TIYLGE
Sbjct: 347 TIYLGE 352
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|O94620|CWF17_SCHPO Pre-mRNA-splicing factor cwf17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf17 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/305 (46%), Positives = 200/305 (65%), Gaps = 1/305 (0%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTG 406
RTS+L P + + GH E+ +++ P G Y AS G DRQI +W+V+G+ +N GV++G G
Sbjct: 35 RTSDLNVPNLQMFGHTAEVLVARFDPSGSYFASGGMDRQILLWNVFGDVKNYGVLNGCKG 94
Query: 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASG 466
A+ DL++S D ++ S+D L WD GQ+I+K KGH+ VN+ D ++ G L+ S
Sbjct: 95 AITDLQWSRDSRVVYCSSSDTHLMSWDAVSGQKIRKHKGHAGVVNALDVLKVGSELLTSV 154
Query: 467 SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK 526
SDDCT+KVWD R K+ ++ Y +T+VA V GGID IK+WDLR N
Sbjct: 155 SDDCTMKVWDSRSKDCIKTIEEKYPLTAVAIAQQGTQVFIGGIDGAIKIWDLRNNHCSHV 214
Query: 527 LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586
L+GH D +T L++S DGS +LSN+MDNTVRI+D++P+ +R +++ G H E NLL
Sbjct: 215 LKGHKDIITSLAISKDGSSLLSNSMDNTVRIFDVKPFASAQRQLQIFEGAIHGQEHNLLG 274
Query: 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKT 646
AWS + +V AGS+DK VY+W + T + Y LPGH GSVN V FHP + II+S SSD+T
Sbjct: 275 VAWSRNSRFVGAGSSDKNVYVW-SATGDLRYVLPGHEGSVNHVDFHPHQDIILSCSSDRT 333
Query: 647 IYLGE 651
I+LGE
Sbjct: 334 IFLGE 338
|
Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54S79|WDR3_DICDI WD repeat-containing protein 3 homolog OS=Dictyostelium discoideum GN=wdr3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/391 (41%), Positives = 228/391 (58%), Gaps = 42/391 (10%)
Query: 816 LVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIR----LALLLNNNSLELHSLS---LGG 868
+V+ ++ TIKT+SK G +I+ + L NSLE + + GG
Sbjct: 329 IVEEMRHRQTIKTSSKVR-------FFSFGNDIKHWNKFVITLAGNSLEAYEIKEKEQGG 381
Query: 869 STDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYA 928
V ++ GH S++R+L+ SS++ LVS + VK+WN SLSC+R+I Y
Sbjct: 382 GAFEVS--STLDQAGHRSDIRSLSLSSNDQMLVSTSSESVKVWNMKSLSCIRSI-ACDYG 438
Query: 929 LSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPL 988
L F PG+ HV+VGTK G + + ++ + + I AH +WS+ + PD
Sbjct: 439 LCTVFAPGNLHVIVGTKTGTIEVFELASAARVASIKAHEGSVWSLVLTPDLRG------- 491
Query: 989 QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV 1048
V +GG DK VK W EL++ + E +K HKVL+L T+TLK+E VL +
Sbjct: 492 ---VTSGGADKLVKFWDFELIA----SQENSK-----HKVLNLSLTKTLKVESDVLALKY 539
Query: 1049 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1108
S D+K LAVSLLD TVKIF+ DT KF +SLYGHKLPV+ LD+S DSTLI TGS D+ +K+
Sbjct: 540 SADNKFLAVSLLDNTVKIFYTDTVKFHLSLYGHKLPVMCLDISDDSTLIITGSADKNIKI 599
Query: 1109 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISL 1168
WGLDYGDCHKS AH+DS+ V+F+P TH+F + SKD R+K WDAD FE I T+
Sbjct: 600 WGLDYGDCHKSFFAHDDSIMQVSFIPSTHHFISASKDKRIKYWDADKFEHIQTIE----- 654
Query: 1169 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
H V SL M +GS DR+++++
Sbjct: 655 -AHHGEVWSLAMGSVGDFFISGSHDRSIRIF 684
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q12220|UTP12_YEAST U3 small nucleolar RNA-associated protein 12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DIP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 221/370 (59%), Gaps = 26/370 (7%)
Query: 834 KIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGG---STDSVRHLRSIHAQGHHSEVRA 890
KIKS ++ L L ++N++E +S+ ++ + +I QG ++VR+
Sbjct: 337 KIKSASWTTVSSSKLELVLTTSSNTIEYYSIPYEKRDPTSPAPLKTHTIELQGQRTDVRS 396
Query: 891 LAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLL 950
+ S DN L +A +KIWN + C+RT + G YAL+ F+PG V++GT++G L
Sbjct: 397 IDISDDNKLLATASNGSLKIWNIKTHKCIRTFECG-YALTCKFLPGGLLVILGTRNGELQ 455
Query: 951 IVDIGAGEILEDIP-AHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELV 1009
+ D+ + +L+ I AH +WS+ + D ++VTG DK+VK W +
Sbjct: 456 LFDLASSSLLDTIEDAHDAAIWSLDLTSDG----------KRLVTGSADKTVKFWDFK-- 503
Query: 1010 SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFL 1069
V TK+ + VL L H TL+L + +LC RVSPD + LA+SLLD TVK+FFL
Sbjct: 504 -VENSLVPGTKN--KFLPVLKLHHDTTLELTDDILCVRVSPDDRYLAISLLDNTVKVFFL 560
Query: 1070 DTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1129
D+ KF++SLYGHKLPVLS+D+S+DS +I T S D+ +K+WGLD+GDCHKSL AH+DS+
Sbjct: 561 DSMKFYLSLYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLDFGDCHKSLFAHQDSIMN 620
Query: 1130 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIAT 1189
V F+P++H FF+ SKD VK WD + FE I LY H+ V +L ++ D + +
Sbjct: 621 VKFLPQSHNFFSCSKDAVVKYWDGEKFECIQ------KLYAHQSEVWALAVATDGGFVVS 674
Query: 1190 GSGDRTVKVW 1199
S D ++++W
Sbjct: 675 SSHDHSIRIW 684
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2435 | ||||||
| 156555245 | 924 | PREDICTED: WD repeat-containing protein | 0.258 | 0.680 | 0.419 | 1e-146 | |
| 350402665 | 921 | PREDICTED: WD repeat-containing protein | 0.260 | 0.688 | 0.426 | 1e-145 | |
| 340711893 | 921 | PREDICTED: WD repeat-containing protein | 0.273 | 0.724 | 0.409 | 1e-144 | |
| 332018830 | 925 | WD repeat-containing protein 3 [Acromyrm | 0.248 | 0.654 | 0.432 | 1e-144 | |
| 91078794 | 936 | PREDICTED: similar to CG8064 CG8064-PA [ | 0.262 | 0.682 | 0.426 | 1e-143 | |
| 66548774 | 920 | PREDICTED: WD repeat-containing protein | 0.260 | 0.689 | 0.421 | 1e-143 | |
| 383858162 | 922 | PREDICTED: WD repeat-containing protein | 0.260 | 0.687 | 0.418 | 1e-142 | |
| 380025297 | 920 | PREDICTED: LOW QUALITY PROTEIN: WD repea | 0.273 | 0.725 | 0.412 | 1e-142 | |
| 307166488 | 953 | WD repeat-containing protein 3 [Camponot | 0.257 | 0.658 | 0.414 | 1e-142 | |
| 322793930 | 903 | hypothetical protein SINV_80425 [Solenop | 0.262 | 0.706 | 0.415 | 1e-140 |
| >gi|156555245|ref|XP_001604216.1| PREDICTED: WD repeat-containing protein 3-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 294/701 (41%), Positives = 417/701 (59%), Gaps = 72/701 (10%)
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+ +WDLR VQ L G VT L+ SP+ I + D +V+ +D+R V V
Sbjct: 47 VYIWDLRLGEKVQVLSGEKANVTCLAASPNKRQIAAGYDDGSVKTFDLRS----AENVSV 102
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632
GH + A+ G ++ +GS D + +WD +L GH G + V F
Sbjct: 103 FVGHH----SEVTSLAYDHLGHHLVSGSKDTDIIVWDVVAENGICRLVGHKGVITKVAFM 158
Query: 633 PKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRV--HTMVNDKHRQILCCHGNDNV 690
I++S+S D I + L + L + V T+V D + C ND
Sbjct: 159 RDHNIVISSSKDTFIKFWD--LDNEHNFKTLIGHRSEVWGFTLVKDDEYLVSGC--NDRE 214
Query: 691 VDLFYFCTKDESSTRCRKRLRKLKKKEK-----YESPLHCDKAGSILRSGKGRVHTMVND 745
+ ++ D + L L ++ + PL C K G+I+R GKGR++++ D
Sbjct: 215 LHIWKIYFTDALKSDGNIELPNLAIEDDGDEADMKYPLRCVKIGNIVRVGKGRINSLTAD 274
Query: 746 KHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKK-------EKKLQEEQMEVVE 798
QI+ CHG DN V+LF+F +D+ T+ KRL KLKKK ++KLQE +++ +
Sbjct: 275 YSGQIVGCHGTDNTVELFHFLPEDQIKTKKSKRLDKLKKKAASDEKIKEKLQEAELDTI- 333
Query: 799 ENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNS 858
L D + RL IK ++K K++D+I+G G E+R+ ++NN+
Sbjct: 334 -----------------LRDQINRLSVIKVSAKA---KALDLIMGRGDELRICTNVSNNT 373
Query: 859 LELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSC 918
+ELHSL++ T + LR++ + GH +EVRA+ FSSDNLA + VK+WNRP+L+C
Sbjct: 374 IELHSLAVTEKTAEPQLLRTLSSHGHRTEVRAVCFSSDNLAFATVSGDSVKLWNRPTLTC 433
Query: 919 LRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPD 978
LRT++ G YALS+ FVPGDRH++VG K G++LI+DI AG+ILE+IPAH ELWSV +LP
Sbjct: 434 LRTVECG-YALSLTFVPGDRHLIVGLKSGKMLIIDIAAGDILEEIPAHENELWSVTLLPT 492
Query: 979 QFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK 1038
VV+GGGDK+VK WQ ELV + + E+K KVLS++H +TLK
Sbjct: 493 LKG----------VVSGGGDKTVKFWQFELV---EDPESESK-----AKVLSVIHYKTLK 534
Query: 1039 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIA 1098
LEE VLC R+SP+++ +AV+LLD+TVKIFFLDTFKFF+SLYGHKLPVL +D+S DS LIA
Sbjct: 535 LEESVLCVRISPNNRFVAVALLDSTVKIFFLDTFKFFVSLYGHKLPVLCMDISSDSALIA 594
Query: 1099 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1158
TGS DR +K+WGLD+GDCHKSL AH+DSVTG+ FVPKTHY FT KDG+VK+WDADNF++
Sbjct: 595 TGSADRNIKIWGLDFGDCHKSLFAHDDSVTGIAFVPKTHYLFTCGKDGKVKEWDADNFQK 654
Query: 1159 IVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
IVTL GH + +S + A+ D+ ++++
Sbjct: 655 IVTLQ------GHTGQAYNCAVSPNGVYAASCGSDKVIRIY 689
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350402665|ref|XP_003486560.1| PREDICTED: WD repeat-containing protein 3-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 294/690 (42%), Positives = 410/690 (59%), Gaps = 56/690 (8%)
Query: 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMS 574
+WDLR VQ L G +VT L+ SP+ +I D T++ +D++ GE +
Sbjct: 49 IWDLRLGEKVQVLSGEKVSVTYLAASPNKQHIAVGYADGTIKTFDLKT---GEN-TSIFV 104
Query: 575 GHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPK 634
GH+ E +L + G + +GS D + +WD +L GH G + ++ F
Sbjct: 105 GHRS--EITIL--IYDRGGHRLASGSKDTDIILWDIVAETGICRLTGHKGVITNLAFMKD 160
Query: 635 EPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLF 694
II+S+S D + + L + L + V +V K Q L NDN + ++
Sbjct: 161 HNIIISSSKDTFVKFWD--LDTEHNFRTLVGHRTEVWGLVLIKDDQYLITGCNDNELRIW 218
Query: 695 YFCTKDESSTRCRKRLRKLKKKEKYE-----SPLHCDKAGSILRSGKGRVHTMVNDKHRQ 749
+ + L L + E PL C+K GSILRSG GRV ++ D
Sbjct: 219 QISFTEGEAVDFDVNLHDLTLTDDAEISNVKHPLKCEKVGSILRSGHGRVASLNVDATHT 278
Query: 750 ILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEG 809
++ CHG DN V+LF + KRLRK +KK +K ++ E N
Sbjct: 279 VIGCHGLDNTVELFQLLPDTKIKDNILKRLRKERKKAEKSEKS----AETN--------- 325
Query: 810 GKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGS 869
G P + D + RLP IK ++K K + +++G GE+R+ + LNNNS+EL+SL
Sbjct: 326 FSGTPTIKDELIRLPFIKVSAKA---KGLSIVMGRSGELRVCVGLNNNSIELYSLFTQEK 382
Query: 870 TDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYAL 929
V+HLRSI GH SEVRA+ FSSDNLA +A VK+WNRP+L+CLRT+ +YAL
Sbjct: 383 NAEVKHLRSITNHGHRSEVRAVCFSSDNLAFATAAGDSVKLWNRPTLACLRTVQC-NYAL 441
Query: 930 SVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQ 989
+ FVPGDRH+++G KDG++LI+DI +G+ILE+IPAHS+ELWSV + PD+
Sbjct: 442 TATFVPGDRHLIIGLKDGKMLIIDIASGDILEEIPAHSKELWSVTLFPDKKG-------- 493
Query: 990 IQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1049
V +GGGD++VK W EL+ ++ D E K KVLS+LH +TLKLE+ VLC R+S
Sbjct: 494 --VASGGGDQTVKFWNFELI---QDPDREIK-----AKVLSVLHLKTLKLEDSVLCVRIS 543
Query: 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1109
P+SK +AV+LLD+TVK+FFLDTFKFFISLYGHKLPVL +D+S DSTLIATGS DR +K+W
Sbjct: 544 PNSKFVAVALLDSTVKVFFLDTFKFFISLYGHKLPVLCMDISSDSTLIATGSADRNIKIW 603
Query: 1110 GLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLY 1169
GLD+GDCHKS+ AH+DSV+G++FVP THY FT KDG+VKQWDADNF++IVTL
Sbjct: 604 GLDFGDCHKSIFAHDDSVSGLSFVPNTHYIFTCGKDGKVKQWDADNFQKIVTLQ------ 657
Query: 1170 GHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
GH + +S + + + DR V+++
Sbjct: 658 GHAGTAWNCAVSPNGLYVISCGSDRVVRLY 687
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340711893|ref|XP_003394501.1| PREDICTED: WD repeat-containing protein 3-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-144, Method: Compositional matrix adjust.
Identities = 297/725 (40%), Positives = 419/725 (57%), Gaps = 58/725 (8%)
Query: 481 NQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLS 540
N + ++++ V V + + G + +WDLR VQ L G VT L+ S
Sbjct: 15 NLNIIISSSCNVVFVTLQEQEGRFVAVGACEHVFIWDLRLGEKVQVLSGEKVNVTYLAAS 74
Query: 541 PDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGS 600
P+ +I D T++I+D++ GE + GH+ + + G + +GS
Sbjct: 75 PNKQHIAVGYADGTIKIFDLKT---GEN-TSIFVGHR----SEITTLIYDRGGHRLASGS 126
Query: 601 ADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAG 660
D + +WDT +L GH G + D+ F II+S+S D + + L +
Sbjct: 127 KDTDIILWDTVAETGICRLTGHKGVITDLAFMKDHNIIISSSKDTFVKFWD--LDNEHNF 184
Query: 661 SILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYE 720
L + V +V K Q L NDN + ++ + + L L + E
Sbjct: 185 RTLVGHRTEVWGLVLIKDDQYLITGCNDNELRIWQISFTEGEAVDFDVNLHDLTLADDAE 244
Query: 721 -----SPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRC 775
PL C K GSILRSG GRV ++ D ++ CHG DN V+LF +
Sbjct: 245 ISNVKHPLKCGKVGSILRSGHGRVASLNVDTTHTVIGCHGLDNTVELFQLLPDTKIKDNI 304
Query: 776 RKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGG-KGKPELVDVVKRLPTIKTASKTGK 834
KRLRK +KK +K +E +TE G P + D RLP IK ++K
Sbjct: 305 LKRLRKERKKAEKSEE--------------NTETNFSGTPTIKDEFIRLPFIKVSAKA-- 348
Query: 835 IKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFS 894
K + +++G GE+R+ + LNNNS+EL+SL V+HLRSI GH SEVRA+ FS
Sbjct: 349 -KGLSLVMGRSGELRVCVGLNNNSIELYSLFTKEKNTEVKHLRSITNHGHRSEVRAICFS 407
Query: 895 SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDI 954
SDNLA V+A VK+WNRP+L+CLRT+ +YAL+ FVPGDRH++VG KDG +LI+DI
Sbjct: 408 SDNLAFVTAAGDSVKLWNRPTLACLRTVQC-NYALTAIFVPGDRHLIVGLKDGTMLIIDI 466
Query: 955 GAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE 1014
+ +ILE+IPAHS+ELWSV + PD+ VV+GGGD++VK W EL+ ++
Sbjct: 467 ASSDILEEIPAHSKELWSVTLYPDKKG----------VVSGGGDRTVKFWNFELI---QD 513
Query: 1015 ADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF 1074
D E K KVLS+LH++TLKLE+ VLC ++SP+ + +AV+LLD+TVK+FFL TFKF
Sbjct: 514 PDREIK-----AKVLSVLHSKTLKLEDSVLCVKISPNGRFIAVALLDSTVKVFFLSTFKF 568
Query: 1075 FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP 1134
F+SLYGHKLPVL +D+S DSTLIATGS DR +K+WGLD+GDCHKS+ AH+DSV+G++FVP
Sbjct: 569 FVSLYGHKLPVLCMDISSDSTLIATGSADRNIKIWGLDFGDCHKSMFAHDDSVSGLSFVP 628
Query: 1135 KTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDR 1194
THY FT KDG+VKQWDADNF++IVTL GH + +S + + + DR
Sbjct: 629 NTHYIFTCGKDGKVKQWDADNFQKIVTLQ------GHAGTAWNCAVSPNGHYVISCGSDR 682
Query: 1195 TVKVW 1199
V+++
Sbjct: 683 VVRLY 687
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332018830|gb|EGI59388.1| WD repeat-containing protein 3 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 287/664 (43%), Positives = 406/664 (61%), Gaps = 59/664 (8%)
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+ +WDLR Q L G VT L+ SPD +I D TV+ +D+ GE + +
Sbjct: 47 VYIWDLRLGEKAQVLSGEKVCVTCLAASPDKKHIAVGYADGTVKTFDLST---GEN-ISI 102
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632
GH+ + A+ V G + GS D + +WD +L GH G + + F
Sbjct: 103 FVGHK----SEITTLAYDVLGHRLATGSKDTDIIVWDVVAETGICRLNGHKGVITKLIFM 158
Query: 633 PKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMV--NDKHRQILCCHGNDNV 690
+ II+SAS D + + L + L K V + V ND H I C ND
Sbjct: 159 KEHNIIISASKDTFVKFWD--LDTEHNFKTLVGHKSEVWSFVLMNDDHYLITGC--NDME 214
Query: 691 VDLFYFCTKDESSTRCRKRLRKLKKKEKYES--------PLHCDKAGSILRSGKGRVHTM 742
+ ++ ++ + + + E+ E P+ C+KAGSILR+ +GRV ++
Sbjct: 215 LRVWKITFLNDRNIELDNAVGTIDTNEENEESVDTDMKYPIKCEKAGSILRTTRGRVVSL 274
Query: 743 VNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPV 802
D ++L CHG N ++LFY ++D R KRL KK+ +K Q+E+ +E P
Sbjct: 275 EVDSTCKVLGCHGVGNSIELFYLLSEDIIKNRFTKRL---KKERRKAQKEENAAEKELPT 331
Query: 803 DPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELH 862
P L D ++RLP I+ +GK K +D+++G G E+R+ + +NNNS+ELH
Sbjct: 332 ----------TPSLKDEIQRLPVIRV---SGKTKGLDLVIGRGNELRVCVGINNNSIELH 378
Query: 863 SLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTI 922
SL + V+HLRSI A GH ++VRA+ FSSDNLA +A VK+WNRP+LS LRT+
Sbjct: 379 SLFMDEKNQEVKHLRSITAHGHRTDVRAICFSSDNLAFATASGDSVKLWNRPTLSSLRTV 438
Query: 923 DTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNP 982
G YAL++ FVPGDRH++VG KDG++LI+DI +G+ILE+I AHS+EL S+ + PD
Sbjct: 439 QCG-YALTITFVPGDRHLIVGLKDGKMLIIDISSGDILEEISAHSKELSSITLFPDLKG- 496
Query: 983 NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1042
V +GGGD++VK W EL+ +++D + K KVLS+LH RTLKLEE
Sbjct: 497 ---------VASGGGDQTVKFWNFELI---QDSDNQIK-----AKVLSVLHVRTLKLEES 539
Query: 1043 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG 1102
VLC R+SP+++ LAVSLL++T+KIFFLDTFKFF+SLYGH+LPVL +D+S DSTLIATGS
Sbjct: 540 VLCVRISPNNRFLAVSLLNSTIKIFFLDTFKFFLSLYGHELPVLCMDISSDSTLIATGSQ 599
Query: 1103 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162
DR +K+WGLDYGDC +S+ AH+DSVTG++FVP THYFFT+ KDG++KQWDAD +++I+TL
Sbjct: 600 DRNIKIWGLDYGDCRRSIFAHDDSVTGLSFVPGTHYFFTSGKDGKIKQWDADIYKKIITL 659
Query: 1163 --HF 1164
HF
Sbjct: 660 QSHF 663
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91078794|ref|XP_970038.1| PREDICTED: similar to CG8064 CG8064-PA [Tribolium castaneum] gi|270003730|gb|EFA00178.1| hypothetical protein TcasGA2_TC003001 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1332), Expect = e-143, Method: Compositional matrix adjust.
Identities = 297/696 (42%), Positives = 415/696 (59%), Gaps = 57/696 (8%)
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+ +WDLR Q L G TVT + SP+ ++ D V+++D++ + +
Sbjct: 47 VIIWDLRLGEKAQVLPGEKATVTAICASPNKRHLAVGYSDGNVQVYDLK----SAEVISI 102
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632
SGH+ + A+ G + +GS D V +WDT +L GH G + + F
Sbjct: 103 FSGHR----SEVTTLAFDSYGHKLASGSKDTDVIVWDTVAETGLCRLSGHKGPITQIAFM 158
Query: 633 PKEPIIMSASSDKTIYLGE-SPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVV 691
+ I++S S D + + HC K L + V + K Q L D +
Sbjct: 159 SQHNILISGSKDSFVKFWDLDTQHCFKT---LTGHRTEVWGLSLVKDDQYLVTGCGDAEL 215
Query: 692 DLFYFCTKDESSTRCRK--------RLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMV 743
++ KD S L L + + PL C K GS+LR+GKGRV +M
Sbjct: 216 RVWKLSQKDPDSENKSSIDHLTSTLELIDLHESDDLNHPLQCHKIGSLLRAGKGRVVSMF 275
Query: 744 NDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVD 803
D Q++ CHG D ++LFYFCT DE+ R +KRL+K +KK K+L+ +
Sbjct: 276 CDGSGQVIGCHGTDTQLELFYFCTDDEAQVRLKKRLKKERKKNKELESNDQD-------- 327
Query: 804 PDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHS 863
+T+ + L D VKRL IK +K KS+D++LG GGE+R+++ L+NN++EL++
Sbjct: 328 -QETQSQDLQLTLRDQVKRLVPIKLPNKP---KSLDLVLGNGGELRVSVNLSNNTVELYT 383
Query: 864 LSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID 923
+ LRSI QGHHSEVR++ FS+DNLA+ S A +K+WNRPS +CLRT++
Sbjct: 384 IQTAVKNCEATCLRSILNQGHHSEVRSVCFSNDNLAIASGSAEAIKMWNRPSQACLRTVE 443
Query: 924 TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPN 983
TG Y LS FVPGDRHVL G K+G LLI+DI AG+ILE+IPAHS ELW++ + PDQ
Sbjct: 444 TG-YILSCIFVPGDRHVLAGLKNGTLLIIDIAAGDILEEIPAHSDELWAICLQPDQRG-- 500
Query: 984 VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV 1043
VTGGGDK+VK WQ ELV DE+++ + KVLSLLH +TLKLE+ V
Sbjct: 501 --------CVTGGGDKTVKFWQFELV-----VDEKSESKA---KVLSLLHVKTLKLEDSV 544
Query: 1044 LCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1103
LC ++SP+ K +AV LLDTTVKIFF+DT KF++SLYGHKLPVL LD+S DS LIATGS D
Sbjct: 545 LCVKISPNGKFIAVGLLDTTVKIFFVDTLKFYLSLYGHKLPVLCLDISSDSALIATGSAD 604
Query: 1104 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1163
R VK+WG+D+GDCHKS+ AH+DSVTG+ FVP+THYFFT KDG+VKQWD D++++I+TL
Sbjct: 605 RNVKIWGMDFGDCHKSIFAHDDSVTGLQFVPRTHYFFTCGKDGKVKQWDGDSYDKIITLQ 664
Query: 1164 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
GH +L +S + + + DR ++++
Sbjct: 665 ------GHAGEAWALAVSPNGQFVVSCGADRVLRLY 694
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66548774|ref|XP_624815.1| PREDICTED: WD repeat-containing protein 3-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 292/693 (42%), Positives = 416/693 (60%), Gaps = 59/693 (8%)
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+ +WDLR V+ L G VT L+ SP+ +I D T++ +D++ GE V +
Sbjct: 47 VYIWDLRLGEKVRVLSGDKVNVTYLAASPNKQHIAVGYADGTIKTFDLKV---GEN-VSI 102
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632
GH+ E +LR + G + +GS D + +WD +L GH G + ++ F
Sbjct: 103 FVGHKS--EITILR--YDREGHRLASGSKDTDIILWDVVAEIGICRLTGHKGVITNLAFM 158
Query: 633 PKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVD 692
+I+S S D + + L + L + V ++V K+ Q L NDN +
Sbjct: 159 KDHNVIISCSKDTFVKFWD--LDTEHNFRTLVGHRTEVWSLVLVKNDQYLITGCNDNELR 216
Query: 693 LFYFCTKDESSTRCRKRLRKLKKKEKYE-----SPLHCDKAGSILRSGKGRVHTMVNDKH 747
++ + +T L L + E PL C+K GSILRSG GRV ++ D
Sbjct: 217 IWKISFIENDNTEFDVNLHNLTLTDDTEVSDVKHPLRCEKVGSILRSGHGRVVSLEVDNT 276
Query: 748 RQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDT 807
I+ C+G DN V+LF + KRLRK +KK +K + D
Sbjct: 277 YTIIGCYGLDNTVELFQLLPDSKIKDNVLKRLRKERKKAEK--------------NGKDI 322
Query: 808 EGG-KGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSL 866
E G + D + RL IK +SK IK + +I+G GE+R+++ LNNNS++L+SL +
Sbjct: 323 EANFSGASTIKDEIIRLHPIKVSSK---IKGLSIIMGRNGELRISIGLNNNSIDLYSLFI 379
Query: 867 GGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGS 926
D ++HLRSI GH SE+RA+ FSSDNLA +A A VK+WNRP+L+CLRT++ +
Sbjct: 380 K-EKDEIKHLRSITNHGHRSEIRAICFSSDNLAFATASADSVKLWNRPTLACLRTVEC-N 437
Query: 927 YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYL 986
YAL+ FVPGDRH++VG KDG++LI+DI +G+ILE+I AHS+ELWSV +LPD+
Sbjct: 438 YALTAIFVPGDRHLIVGLKDGKMLIIDIASGDILEEISAHSRELWSVTLLPDKKG----- 492
Query: 987 PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA 1046
VV+GGGD++VK W EL+ ++ D E K K+LS+LH RTLKLE+ VLC
Sbjct: 493 -----VVSGGGDQTVKFWNFELI---QDPDREIK-----AKILSVLHLRTLKLEDTVLCV 539
Query: 1047 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1106
R+SP+++ +AV+LLD+TVKIFFLDTFKFFISLYGHKLPVL +D+S DSTLIATGS DR +
Sbjct: 540 RISPNNRFVAVALLDSTVKIFFLDTFKFFISLYGHKLPVLCMDISSDSTLIATGSADRNI 599
Query: 1107 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFI 1166
K+WGLD+GDCHKS+ AH+DS+TG++FVP THY FT KDG++KQWD D F++IVTL
Sbjct: 600 KIWGLDFGDCHKSIFAHDDSITGLSFVPGTHYIFTCGKDGKIKQWDTDIFQKIVTLQ--- 656
Query: 1167 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
GH + +S + + + D+ V+++
Sbjct: 657 ---GHAGKAWNCAISPNGIYVVSCGSDKVVRLY 686
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383858162|ref|XP_003704571.1| PREDICTED: WD repeat-containing protein 3 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1327), Expect = e-142, Method: Compositional matrix adjust.
Identities = 288/688 (41%), Positives = 407/688 (59%), Gaps = 54/688 (7%)
Query: 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMS 574
+WDLR Q L G TVT L+ SP+ +I MD T++ +++ GE +
Sbjct: 49 VWDLRLGEKAQVLSGDKATVTCLAASPNKQHIAVGYMDGTIKTFNLES---GEN-TSIFV 104
Query: 575 GHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPK 634
GH+ + + G + +GS D + +WD +L GH G + + F
Sbjct: 105 GHR----SEITTLVYDSKGHRLASGSKDTDIILWDIVAETGICRLSGHKGVITKLVFMSN 160
Query: 635 EPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLF 694
II+SAS D + + + + L + V ++ K+ L NDN + ++
Sbjct: 161 HNIIISASKDTFVKFWD--IDTEHNFRTLVGHRTEVWSLALVKNDHYLVTGCNDNELRVW 218
Query: 695 -YFCTKDESSTRCRKRLRKLKKKE--KYESPLHCDKAGSILRSGKGRVHTMVNDKHRQIL 751
F T E+ + L E + PL C+K GSILRS +GRV ++ D I+
Sbjct: 219 KIFFTDTETVDINLQELTLTDDAEVSDMKHPLRCEKIGSILRSSRGRVVSLEVDTTHTII 278
Query: 752 CCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGK 811
CHG DN VDLF + KRLRK E+K E+ +EEN
Sbjct: 279 GCHGVDNTVDLFQLLPDTKVKENVAKRLRK----ERKKAEKNGSNIEENV---------S 325
Query: 812 GKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTD 871
P + D + RLP IK ++K K +D+++G GGE+R+ + +NNNS+EL+SL
Sbjct: 326 KVPTIKDEIIRLPIIKISAKA---KGLDMVMGRGGELRICVGVNNNSIELYSLLTQEKDI 382
Query: 872 SVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSV 931
++ LRSI GH ++VRA+ FSSDNLA +A VK+WNRP+L+CLRT+ G YAL++
Sbjct: 383 EIKQLRSITIHGHRTDVRAVCFSSDNLAFATASGDSVKLWNRPTLACLRTVQCG-YALTL 441
Query: 932 CFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQ 991
FVPGDRH++VG KDG++LI+DI AG+ILE++PAHS+ELWSV + PD+
Sbjct: 442 TFVPGDRHLIVGLKDGKMLIIDITAGDILEEVPAHSKELWSVTLFPDKKG---------- 491
Query: 992 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD 1051
V +GGGD++VK W EL+ + D E K KVLS+LH +TLKLE+ VLC R+SP+
Sbjct: 492 VASGGGDQTVKFWNFELI---EDPDREIK-----AKVLSVLHLKTLKLEDTVLCVRISPN 543
Query: 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1111
++ +AV+LLD+T+KIFFLDTFKFFISLYGHKLPVL +D+S DSTLI TGS DR +K+WGL
Sbjct: 544 NRFVAVALLDSTIKIFFLDTFKFFISLYGHKLPVLCMDISSDSTLITTGSADRNIKIWGL 603
Query: 1112 DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGH 1171
D+GDCHKS+ AH+DSVTG++FVP THY FT KDGR+K+WDAD+F +IVTLH GH
Sbjct: 604 DFGDCHKSIFAHDDSVTGLSFVPGTHYVFTCGKDGRIKEWDADSFHKIVTLH------GH 657
Query: 1172 KLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
+ +S + + + D+ V+++
Sbjct: 658 TGEAWNCAVSPNGIYVVSCGSDKVVRLY 685
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380025297|ref|XP_003696413.1| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 3-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1323), Expect = e-142, Method: Compositional matrix adjust.
Identities = 299/724 (41%), Positives = 425/724 (58%), Gaps = 57/724 (7%)
Query: 481 NQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLS 540
N + ++ T V V D + G + +WDLR V+ L G VT L+ S
Sbjct: 15 NLNIIVSPTCNVVFVKLEDHEGRFVAVGACEHVFIWDLRLGEKVRVLSGDKVNVTYLAAS 74
Query: 541 PDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGS 600
P+ ++ D T++ +D++ GE V + GH+ E LR + G + +GS
Sbjct: 75 PNKQHVAVGYADGTIKTFDLKT---GEN-VSIFVGHRS--EITTLR--YDREGHRLASGS 126
Query: 601 ADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAG 660
D + +WD +L GH G + ++ F +I+S S D + + L +
Sbjct: 127 KDTDIILWDVVAEIGICRLTGHKGVITNLAFMKDHNVIISCSKDTFVKFWD--LDTEHNF 184
Query: 661 SILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYE 720
L + V ++V K+ Q L NDN + ++ + S L L + E
Sbjct: 185 RTLVGHRTEVWSLVLVKNDQYLITGCNDNELHIWKISFIESDSIDFDVNLHNLTLTDDTE 244
Query: 721 -----SPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRC 775
PL C+K GSILRSG GRV ++ D I+ C+G DN V+LF
Sbjct: 245 VSDVKHPLRCEKVGSILRSGHGRVVSLEVDNTYTIIGCYGLDNTVELFQLLPDSRIKDNV 304
Query: 776 RKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKI 835
KRLRK +KK +K ++ +E N G + D + RL IK ++K I
Sbjct: 305 LKRLRKERKKAEKSGKD----IEANF---------SGTSTIKDEIIRLHPIKVSAK---I 348
Query: 836 KSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSS 895
K + +I+G GE+R+++ LNNNS++L+SL + D ++HLRSI GH SEVRA+ FSS
Sbjct: 349 KGLSIIMGRNGELRISIGLNNNSIDLYSLFIK-KKDEIKHLRSITNHGHRSEVRAVCFSS 407
Query: 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG 955
DNLA +A VK+WNRP+L+CLRT++ SYAL+ FVPGDRH++VG KDG++LI+DI
Sbjct: 408 DNLAFATASGDSVKLWNRPTLACLRTVEC-SYALTAIFVPGDRHLIVGLKDGKMLIIDIA 466
Query: 956 AGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREA 1015
+G+ILE+I AHS+ELWS+A+LPD+ V +GGGD++VK W EL+ ++
Sbjct: 467 SGDILEEISAHSKELWSIALLPDKKG----------VTSGGGDQTVKFWNFELI---QDP 513
Query: 1016 DEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFF 1075
D+E K K+LS+LH RTLKLE+ VLC R+SP+++ +AV+LLD+TVKIFFLDTFKFF
Sbjct: 514 DKEIK-----AKILSVLHLRTLKLEDTVLCVRISPNNRFVAVALLDSTVKIFFLDTFKFF 568
Query: 1076 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1135
ISLYGHKLPVL +D+S DSTLIATGS DR +K WGLD+GDCHKS+ AH+DSVTG++FVP
Sbjct: 569 ISLYGHKLPVLCMDISSDSTLIATGSADRNIKXWGLDFGDCHKSIFAHDDSVTGLSFVPG 628
Query: 1136 THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1195
THY FT KDG+VKQWDAD F++IVTL GH + +S + + + D+
Sbjct: 629 THYIFTCGKDGKVKQWDADIFQKIVTLQ------GHAGKAWNCTVSPNGIYVVSCGSDKV 682
Query: 1196 VKVW 1199
V+++
Sbjct: 683 VRLY 686
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307166488|gb|EFN60573.1| WD repeat-containing protein 3 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 289/697 (41%), Positives = 406/697 (58%), Gaps = 69/697 (9%)
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+ +WDLR L VT L+ SP+ +I D TV+I+D+ GE V V
Sbjct: 47 VYIWDLR-------LGEKKICVTRLAASPNKRHIAVGYADGTVKIFDL---TTGEN-VSV 95
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632
GH+ + A+ G + GS D + IWD +L GH G + + F
Sbjct: 96 FVGHK----SEITALAYDTLGHRLATGSKDTDIIIWDVVAETGICRLTGHKGVITKLAFM 151
Query: 633 PKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVD 692
+ II+S+S D + + L + L + V + + K Q L ND +
Sbjct: 152 REHNIIISSSKDTFVKFWD--LDTEHNFKTLVGHRSEVWSFILVKDDQYLITGCNDKELR 209
Query: 693 LFYFCTKDESSTRCRKRLRKLKKKEKYES----------PLHCDKAGSILRSGKGRVHTM 742
++ D + + L E+ E P+ C K G ILR+G GRV ++
Sbjct: 210 VWKITILDNKNIELDAAVSALDLDEENEESMEMDVDMKYPIRCKKIGGILRAGGGRVTSL 269
Query: 743 VNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPV 802
D +IL CHG N ++LF+ D R KRL+K ++ + QEE
Sbjct: 270 EVDSTGKILGCHGAGNSIELFHLLPDDIVKNRFTKRLKK--ERHQAQQEE---------- 317
Query: 803 DPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELH 862
++TE P L D +KRLP ++ GK + D+I+G G E+R+ + NNNS+EL+
Sbjct: 318 --NNTEELPNAPALRDEIKRLPIVQI---LGKPRGFDLIMGKGNELRICVGDNNNSIELY 372
Query: 863 SLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTI 922
SL V+ LRSI A GH ++VRA+ FSSDNLA + VK+WNRP+L+CLRT+
Sbjct: 373 SLHTEEKKPEVKRLRSITAHGHRTDVRAICFSSDNLAFATVSGDSVKLWNRPTLACLRTV 432
Query: 923 DTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNP 982
G YAL+V FVPGDRH++VG KDG++LI+DI +G+ILE++PAHS+ELWSV + PD
Sbjct: 433 QCG-YALAVTFVPGDRHLIVGLKDGKMLIIDIASGDILEEVPAHSKELWSVTLFPDLKG- 490
Query: 983 NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1042
V +GGGD++VK W EL+ +++D + K KVLS+LH RTLKLEE
Sbjct: 491 ---------VASGGGDQTVKFWNFELI---QDSDNQIK-----AKVLSVLHARTLKLEES 533
Query: 1043 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG 1102
VLC R+SP+++ +AVSLLD+T+KIFFLDTFKFF+SLYGHKLP L +D+S DSTLIATGS
Sbjct: 534 VLCVRISPNNRFVAVSLLDSTIKIFFLDTFKFFVSLYGHKLPALCMDISSDSTLIATGSA 593
Query: 1103 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162
DR +K+WGLD+GDCHKS+ AH+DSVTG++FVP THYFF++ KDG++KQWDAD F +IVTL
Sbjct: 594 DRNIKIWGLDFGDCHKSIFAHDDSVTGLSFVPGTHYFFSSGKDGKIKQWDADIFRKIVTL 653
Query: 1163 HFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
H GH + +S + +A+ D+ V+++
Sbjct: 654 H------GHAGESWNCCISPNGVFVASCGSDKVVRLY 684
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322793930|gb|EFZ17216.1| hypothetical protein SINV_80425 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 289/695 (41%), Positives = 408/695 (58%), Gaps = 57/695 (8%)
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+ +WDLR + L G VT L+ SPD +I +D TV+ +++ GE + +
Sbjct: 47 VYIWDLRLGEKARVLSGEKACVTRLAASPDKRHIAVGYVDGTVKTFNLNT---GEN-ISI 102
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632
GH+ + A+ + G + G+ D + +WD +L GH G + + F
Sbjct: 103 FVGHK----SEITALAYDMLGHRLATGAKDTDIIVWDIVAETGICRLSGHKGVITKLVFM 158
Query: 633 PKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVD 692
+ II+SAS D + + L + L K V ++V + + L ND +
Sbjct: 159 KEHNIIISASKDTFVKFWD--LDTEHNFKTLVGHKSEVWSLVLMNNDRYLITGCNDVELR 216
Query: 693 LFYFCTKDESSTRCRKRLRKLKKKEKYES--------PLHCDKAGSILRSGKGRVHTMVN 744
++ D + + L KE+ E P+ CDK GSILR+ GRV ++
Sbjct: 217 VWKITFLDNKNIELASAIGTLDIKEENEESVDTDMKYPVKCDKIGSILRTAGGRVVSLEI 276
Query: 745 DKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDP 804
D ++L CHG N ++LFY +D R KRL+K ++K K+ +EE E
Sbjct: 277 DSTCKVLGCHGVGNSIELFYLLPEDTVKDRFAKRLKKERRKAKEKKEENNAEKEL----- 331
Query: 805 DDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSL 864
P L D +KRL ++ +GK+K D+++G G E+RL + +NNNS+ELHSL
Sbjct: 332 ------PSAPSLTDEIKRLSVVQV---SGKVKGFDLVIGKGNELRLCVGVNNNSIELHSL 382
Query: 865 SLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDT 924
+ V+HLRSI A GH ++VRA+ FSSDNLA V+ VK+WNRP+L+CLRT+
Sbjct: 383 YVEEKNSEVKHLRSIMAHGHRTDVRAVCFSSDNLAFVTVSGDSVKLWNRPTLACLRTVLC 442
Query: 925 GSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV 984
G YAL+V FVPGDRH++VG KDG++L++DI +G+ILE++ AHS+ELWSV + PD
Sbjct: 443 G-YALTVTFVPGDRHLIVGLKDGKMLVIDIASGDILEEVAAHSKELWSVTLFPDLKG--- 498
Query: 985 YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1044
V +G GDK+VK W EL+ E D KVLS+LH RTLKLEE VL
Sbjct: 499 -------VASGSGDKTVKFWNFELI--------EDPDNKIKAKVLSVLHARTLKLEESVL 543
Query: 1045 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDR 1104
C R+SP+++ +AVSLLD T+KIFFLDTFKFF+SLYGHKLPVL +D+S DS LIATGS DR
Sbjct: 544 CVRISPNNRFVAVSLLDCTIKIFFLDTFKFFVSLYGHKLPVLCMDISSDSMLIATGSADR 603
Query: 1105 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF 1164
VK+WGLD+GDCHKS+ AH+DSVTG++FV THYFFT+ KDG++KQWDAD F++I TL
Sbjct: 604 NVKIWGLDFGDCHKSIFAHDDSVTGLSFVHGTHYFFTSGKDGKIKQWDADIFQKITTLQ- 662
Query: 1165 FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
GH + +S + +A+ DR V+++
Sbjct: 663 -----GHAGESWNCCVSPNGVFVASCGSDRVVRLY 692
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2435 | ||||||
| RGD|1307480 | 942 | Wdr3 "WD repeat domain 3" [Rat | 0.094 | 0.245 | 0.465 | 2.1e-151 | |
| UNIPROTKB|F1NC11 | 938 | WDR3 "Uncharacterized protein" | 0.105 | 0.275 | 0.467 | 2.8e-116 | |
| UNIPROTKB|Q9UNX4 | 943 | WDR3 "WD repeat-containing pro | 0.128 | 0.332 | 0.428 | 2e-117 | |
| UNIPROTKB|E1BM03 | 943 | WDR3 "Uncharacterized protein" | 0.136 | 0.352 | 0.421 | 5.2e-118 | |
| UNIPROTKB|F1SAY9 | 943 | WDR3 "Uncharacterized protein" | 0.128 | 0.332 | 0.428 | 1.5e-117 | |
| MGI|MGI:2443143 | 942 | Wdr3 "WD repeat domain 3" [Mus | 0.105 | 0.273 | 0.460 | 4.1e-116 | |
| FB|FBgn0031229 | 347 | CG3436 [Drosophila melanogaste | 0.136 | 0.959 | 0.611 | 1.6e-115 | |
| ZFIN|ZDB-GENE-040426-978 | 347 | snrnp40 "small nuclear ribonuc | 0.125 | 0.878 | 0.629 | 9.1e-112 | |
| UNIPROTKB|F1MLP7 | 358 | SNRNP40 "U5 small nuclear ribo | 0.125 | 0.851 | 0.619 | 6.5e-111 | |
| UNIPROTKB|F1SVA6 | 358 | SNRNP40 "Uncharacterized prote | 0.125 | 0.851 | 0.619 | 6.5e-111 |
| RGD|1307480 Wdr3 "WD repeat domain 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 2.1e-151, Sum P(5) = 2.1e-151
Identities = 113/243 (46%), Positives = 159/243 (65%)
Query: 1 MGLTKQYLRYVHEGSFNIIASPNCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALL 60
MGLTKQYLRYV F +I S N+VFVTL+ ++GR++A A E V IWDLR EK L+
Sbjct: 1 MGLTKQYLRYVASAVFGLIGSQKGNIVFVTLRGEKGRYVAVPACEHVFIWDLRKGEKILI 60
Query: 61 LPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAI 120
L G K E C L P+ D LAV Y +G+++ FSL + + TF GH++A+
Sbjct: 61 LQGLKQEV---------TC-LCPSPDGLHLAVGYEDGAIRVFSLLSGEGNITFNGHRAAV 110
Query: 121 TVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSA 180
T ++YD LG RLA+GSKDTD+++WDV+ E GL+RL GHK +T F+ + + +V+S
Sbjct: 111 TSLKYDQLGGRLASGSKDTDVIIWDVINESGLYRLKGHKDAVTQALFLRE--RNLLVTSG 168
Query: 181 KDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDT 240
KDT VK WD D CFKTM H TEVWG+ ++ E++ LI+G+ D+EL+ W++ +ID
Sbjct: 169 KDTMVKWWDLDNQHCFKTMVGHRTEVWGLVLVSEETRLITGAADSELRAWDIAYLQEIDD 228
Query: 241 EDK 243
++
Sbjct: 229 PEE 231
|
|
| UNIPROTKB|F1NC11 WDR3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 2.8e-116, Sum P(4) = 2.8e-116
Identities = 129/276 (46%), Positives = 174/276 (63%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
I++ GH+ V +L S D+ + +G+ + +VK+W C +++ E ++ + FVP
Sbjct: 404 ITIGGHRSDVRTLAFSSDNIAVLSGAAE-SVKIWNRSTLQCIRTMDC-EYALCSL-FVPG 460
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNP----NVYL-PLQIQVVTGGGDKSVKLWQL 1280
+K G+++ +D + + TL+ + ++ L P Q VTGG DK VK W
Sbjct: 461 DRQVIVGTKTGKLQLYDLASGTLMETLNAHDGAVWSIALSPDQRGFVTGGADKCVKFWDF 520
Query: 1281 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKI 1340
ELV KD S K LS+ R L+L+E VLC R SP+ KLLAVSLLD TVK+
Sbjct: 521 ELV----------KDESSIQKRLSMKQVRILQLDEDVLCVRYSPNQKLLAVSLLDCTVKV 570
Query: 1341 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1400
F+ DT KFF+SLYGHKLPVL +D+SYD LIATGS DR VK+WGLD+GDCH+SL AH+DS
Sbjct: 571 FYTDTLKFFLSLYGHKLPVLCMDISYDGALIATGSADRNVKIWGLDFGDCHRSLFAHDDS 630
Query: 1401 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
V + FV K+H FFT KD ++KQWDAD FE I TL
Sbjct: 631 VMYLQFVAKSHLFFTAGKDNKIKQWDADKFEHIQTL 666
|
|
| UNIPROTKB|Q9UNX4 WDR3 "WD repeat-containing protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 2.0e-117, Sum P(3) = 2.0e-117
Identities = 148/345 (42%), Positives = 203/345 (58%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
I++ GH+ V +L S D+ + + + D ++K+W C +++ E ++ FVP
Sbjct: 409 ITIGGHRSDVRTLSFSSDNIAVLSAAAD-SIKIWNRSTLQCIRTMTC-EYALCSF-FVPG 465
Query: 1226 THYFFTTSKDGRVKQWD--ADNFERIVTLHFNP--NVYL-PLQIQVVTGGGDKSVKLWQL 1280
+K G+++ +D + N + H ++ L P Q VTGG DKSVK W
Sbjct: 466 DRQVVIGTKTGKLQLYDLASGNLLETIDAHDGALWSMSLSPDQRGFVTGGADKSVKFWDF 525
Query: 1281 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKI 1340
ELV KD + + K LS+ TRTL+L+E VLC SP+ KLLAVSLLD TVKI
Sbjct: 526 ELV----------KDENSTQKRLSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKI 575
Query: 1341 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1400
F++DT KFF+SLYGHKLPV+ +D+S+D LIATGS DR VK+WGLD+GDCHKSL AH+DS
Sbjct: 576 FYVDTLKFFLSLYGHKLPVICMDISHDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDS 635
Query: 1401 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL--HICS--CSLNSP-----MNSVH 1451
V + FVPK+H FFT KD ++KQWDAD FE I TL H C SP ++S H
Sbjct: 636 VMYLQFVPKSHLFFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSSSH 695
Query: 1452 LNSCPALEASNDIAELLMECLATMKEYEVECKEMTAMGKPPPSLP 1496
S E + + L++E M E E E +E A + P++P
Sbjct: 696 DKSLRLWERTRE--PLILEEEREM-EREAEYEESVAK-EDQPAVP 736
|
|
| UNIPROTKB|E1BM03 WDR3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 5.2e-118, Sum P(3) = 5.2e-118
Identities = 153/363 (42%), Positives = 212/363 (58%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
I++ GH+ V +L S D+ I + + D ++K+W C +++ A E ++ FVP
Sbjct: 409 ITIGGHRSDVRTLSFSSDNIAILSAAAD-SIKIWNRSTLQCIRTM-ACEYALCSF-FVPG 465
Query: 1226 THYFFTTSKDGRVKQWD--ADNFERIVTLHFNP--NVYL-PLQIQVVTGGGDKSVKLWQL 1280
+K G+++ +D + N + H ++ L P Q VTGG DKSVK W
Sbjct: 466 DRQVVIGTKTGKLQLYDLASGNLLETIDAHDGALWSLSLSPDQRGFVTGGADKSVKFWDF 525
Query: 1281 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKI 1340
ELV KD + + K LS+ TRTL+L+E+VLC SP+ KLLAVSLLD TVKI
Sbjct: 526 ELV----------KDENSTQKRLSVKQTRTLQLDEEVLCVSYSPNQKLLAVSLLDCTVKI 575
Query: 1341 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1400
F++DT KFF+SLYGHKLPV+ +D+SYD LIATGS DR VK+WGLD+GDCHKSL AH+DS
Sbjct: 576 FYVDTLKFFLSLYGHKLPVICMDISYDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDS 635
Query: 1401 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL--HICS--CSLNSP-----MNSVH 1451
V + FVPK+H FFT KD ++KQWDAD FE I TL H C SP ++S H
Sbjct: 636 VMYLRFVPKSHLFFTAGKDRKIKQWDADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSSSH 695
Query: 1452 LNSCPALEASNDIAELLMECLATMKEYEVECKEMTAMGKPPPSLPPIMKALNVTSPRDYL 1511
S E + + L++E M+ E E +E A + P++P + N + + +
Sbjct: 696 DKSLRLWERTRE--PLILEEEKEMQR-EAEYEESVAK-EDQPAVPGETQGDNYFTGKKTI 751
Query: 1512 MTV 1514
TV
Sbjct: 752 ETV 754
|
|
| UNIPROTKB|F1SAY9 WDR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 1.5e-117, Sum P(3) = 1.5e-117
Identities = 148/345 (42%), Positives = 205/345 (59%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
I++ GH+ V +L S D+ + +G+ + ++K+W C +++ E ++ FVP
Sbjct: 409 ITIGGHRSDVRTLSFSSDNIAVLSGAAE-SIKIWNRSTLQCIRTMTC-EYALCSF-FVPG 465
Query: 1226 THYFFTTSKDGRVKQWD--ADNFERIVTLHFNP--NVYL-PLQIQVVTGGGDKSVKLWQL 1280
+K G+++ +D + N V H ++ L P Q VTGG DKSVK W
Sbjct: 466 DRQVVIGTKTGKLQLYDLASGNLLETVDAHDGALWSLSLSPDQRGFVTGGADKSVKFWDF 525
Query: 1281 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKI 1340
ELV KD + + K LS+ TRTL+L+E+VLC SP+ KLLAVSLLD TVKI
Sbjct: 526 ELV----------KDENSTQKRLSVKQTRTLQLDEEVLCVSYSPNQKLLAVSLLDCTVKI 575
Query: 1341 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1400
F++DT KFF+SLYGHKLPV+ +D+SYD LIATGS DR VK+WGLD+GDCHKSL AH+DS
Sbjct: 576 FYVDTLKFFLSLYGHKLPVICMDISYDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDS 635
Query: 1401 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL--HICS--CSLNSP-----MNSVH 1451
V + FVPK+H FFT KD ++KQWDAD FE + TL H C SP ++S H
Sbjct: 636 VMYLKFVPKSHLFFTAGKDRKIKQWDADKFEHVQTLEGHHQEIWCLAISPSGDYVVSSSH 695
Query: 1452 LNSCPALEASNDIAELLMECLATMKEYEVECKEMTAMGKPPPSLP 1496
S E + + L++E M+ E E +E A + P++P
Sbjct: 696 DKSLRLWERTRE--PLILEEEREMQR-EAEYEESVAK-EDQPAVP 736
|
|
| MGI|MGI:2443143 Wdr3 "WD repeat domain 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 587 (211.7 bits), Expect = 4.1e-116, Sum P(4) = 4.1e-116
Identities = 127/276 (46%), Positives = 175/276 (63%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
I++ GH+ V +L S D+ + + + D ++K+W C +++ E ++ FVP
Sbjct: 408 ITIGGHRSDVRTLSFSSDNIAVLSAAAD-SIKIWNRSTLQCIRTMPC-EYALCSF-FVPG 464
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTL--HFNP--NVYL-PLQIQVVTGGGDKSVKLWQL 1280
+K G ++ +D + + T+ H ++ L P Q VTGG DK+VK W
Sbjct: 465 DRQVVIGTKTGNLQLYDLASGTLLETIAAHDGALWSMSLSPDQRGFVTGGADKAVKFWDF 524
Query: 1281 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKI 1340
ELV+ D + + K LS+ TRTL+L+E VLC SP+ KLLAVSLLD TVK+
Sbjct: 525 ELVT----------DKNSTQKRLSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKV 574
Query: 1341 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1400
F++DT KFF+SLYGHKLPVL +D+S+D LIATGS DR VK+WGLD+GDCH+SL AH+DS
Sbjct: 575 FYVDTLKFFLSLYGHKLPVLCMDISHDGALIATGSADRNVKIWGLDFGDCHRSLFAHDDS 634
Query: 1401 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
V + FVPK+H FFT KD ++KQWDAD FE I TL
Sbjct: 635 VMYLRFVPKSHLFFTAGKDHKIKQWDADKFEHIQTL 670
|
|
| FB|FBgn0031229 CG3436 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1150 (409.9 bits), Expect = 1.6e-115, P = 1.6e-115
Identities = 206/337 (61%), Positives = 261/337 (77%)
Query: 315 LRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDG 374
L + + KND + +R+K ++ V RTSNL APIM LEGH GEIF +++HP+G
Sbjct: 12 LAQEAKRSKNDLMAYTNRDKAL----LESGVRRTSNLQAPIMQLEGHEGEIFTAEFHPEG 67
Query: 375 QYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434
+ + SSG+DRQI+IW VY +CEN+ MSGH+GAVM+ F+ DG HIFTCSTD+TLA WD+
Sbjct: 68 ELLLSSGFDRQIYIWQVYEDCENVMAMSGHSGAVMEAHFTPDGSHIFTCSTDKTLAFWDI 127
Query: 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTS 494
GQR ++ KGH FVNS RRGQ L+ SGSDD T+K+WD RKK+ A ++ + +QVT+
Sbjct: 128 ATGQRQRRFKGHGNFVNSVQGSRRGQQLLCSGSDDRTIKIWDARKKHAAHTLESPFQVTA 187
Query: 495 VAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNT 554
V F DT E V++GGIDN++K+WD+R +V+ LRGHSDT+TG+SLSP+G +IL+NAMDNT
Sbjct: 188 VCFGDTGEQVISGGIDNEVKIWDIRKQAVLHHLRGHSDTITGMSLSPEGDFILTNAMDNT 247
Query: 555 VRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR 614
+R+WD+RPY PGERCVKV GHQHNFEKNLLRCAWS +T+GSAD+ VYIWD TRR
Sbjct: 248 LRVWDVRPYAPGERCVKVFQGHQHNFEKNLLRCAWSPGSDKITSGSADRHVYIWDVNTRR 307
Query: 615 IAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651
I YKLPGHNGSVN V F PKEP+I+S SSDKT+YLGE
Sbjct: 308 ILYKLPGHNGSVNAVDFSPKEPLILSGSSDKTLYLGE 344
|
|
| ZFIN|ZDB-GENE-040426-978 snrnp40 "small nuclear ribonucleoprotein 40 (U5)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1115 (397.6 bits), Expect = 9.1e-112, P = 9.1e-112
Identities = 192/305 (62%), Positives = 247/305 (80%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTG 406
R+S+L APIMLL GH GE++C K+HP+G +ASSGYDR I +W+VYG+CEN + GH+G
Sbjct: 41 RSSSLQAPIMLLSGHEGEVYCCKFHPNGATLASSGYDRLILMWNVYGDCENYATLKGHSG 100
Query: 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASG 466
AVM+L ++TDG +F+ STD+T+ VWD E G+R+K++KGH++FVNSC P RRG L +G
Sbjct: 101 AVMELHYNTDGSLLFSASTDKTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTG 160
Query: 467 SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK 526
SDD TVK+WD RKK + NTYQV SV FNDT++ +++GGIDNDIK+WDLR N ++
Sbjct: 161 SDDGTVKLWDIRKKASVHTFQNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYS 220
Query: 527 LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586
++GH D+VTGLSLS DGSY+LSN+MDN+VR+WDIRP+ P ERCVK+ G+ HNFEKNLLR
Sbjct: 221 MQGHGDSVTGLSLSADGSYLLSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLR 280
Query: 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKT 646
C+WS G + AGSAD+ VYIWDTTTRRI YKLPGH GSVN+V FHP+EPI++S SSDK
Sbjct: 281 CSWSADGSKIAAGSADRFVYIWDTTTRRIVYKLPGHAGSVNEVAFHPEEPIVLSGSSDKR 340
Query: 647 IYLGE 651
+Y+GE
Sbjct: 341 LYIGE 345
|
|
| UNIPROTKB|F1MLP7 SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1107 (394.7 bits), Expect = 6.5e-111, P = 6.5e-111
Identities = 189/305 (61%), Positives = 248/305 (81%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTG 406
R S+L APIMLL GH GE++C K+HP+G +AS+G+DR I +W+VYG+C+N + GH+G
Sbjct: 52 RCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSG 111
Query: 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASG 466
AVM+L ++TDG +F+ STD+T+AVWD E G+R+K++KGH++FVNSC P RRG L+ +G
Sbjct: 112 AVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTG 171
Query: 467 SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK 526
SDD TVK+WD RKK + NTYQV +V FNDT++ +++GGIDNDIK+WDLR N +
Sbjct: 172 SDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT 231
Query: 527 LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586
+RGH+D+VTGLSLS +GSY+LSNAMDNTVR+WD+RP+ P ERCVK+ G+ HNFEKNLLR
Sbjct: 232 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 291
Query: 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKT 646
C+WS G + AGSAD+ VY+WDTT+RRI YKLPGH GS+N+V FHP EPII+SASSDK
Sbjct: 292 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKR 351
Query: 647 IYLGE 651
+Y+GE
Sbjct: 352 LYMGE 356
|
|
| UNIPROTKB|F1SVA6 SNRNP40 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1107 (394.7 bits), Expect = 6.5e-111, P = 6.5e-111
Identities = 189/305 (61%), Positives = 248/305 (81%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTG 406
R S+L APIMLL GH GE++C K+HP+G +AS+G+DR I +W+VYG+C+N + GH+G
Sbjct: 52 RCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSG 111
Query: 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASG 466
AVM+L ++TDG +F+ STD+T+AVWD E G+R+K++KGH++FVNSC P RRG L+ +G
Sbjct: 112 AVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTG 171
Query: 467 SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK 526
SDD TVK+WD RKK + NTYQV +V FNDT++ +++GGIDNDIK+WDLR N +
Sbjct: 172 SDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT 231
Query: 527 LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586
+RGH+D+VTGLSLS +GSY+LSNAMDNTVR+WD+RP+ P ERCVK+ G+ HNFEKNLLR
Sbjct: 232 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 291
Query: 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKT 646
C+WS G + AGSAD+ VY+WDTT+RRI YKLPGH GS+N+V FHP EPII+SASSDK
Sbjct: 292 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKR 351
Query: 647 IYLGE 651
+Y+GE
Sbjct: 352 LYMGE 356
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5RF51 | SNR40_PONAB | No assigned EC number | 0.6045 | 0.1043 | 0.7114 | yes | N/A |
| Q96DI7 | SNR40_HUMAN | No assigned EC number | 0.6109 | 0.1043 | 0.7114 | yes | N/A |
| Q55AR8 | SNR40_DICDI | No assigned EC number | 0.5163 | 0.1252 | 0.8591 | yes | N/A |
| Q6PE01 | SNR40_MOUSE | No assigned EC number | 0.6077 | 0.1043 | 0.7094 | yes | N/A |
| Q2HJH6 | SNR40_BOVIN | No assigned EC number | 0.6077 | 0.1043 | 0.7094 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.22 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2435 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-69 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-58 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-54 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-54 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-52 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-51 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-35 | |
| pfam00112 | 213 | pfam00112, Peptidase_C1, Papain family cysteine pr | 5e-35 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-34 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-33 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-33 | |
| smart00645 | 175 | smart00645, Pept_C1, Papain family cysteine protea | 1e-31 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-31 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-30 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-30 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-28 | |
| cd02620 | 236 | cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro | 1e-27 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-27 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-26 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-26 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-26 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-26 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-23 | |
| cd02248 | 210 | cd02248, Peptidase_C1A, Peptidase C1A subfamily (M | 7e-23 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-21 | |
| cd02620 | 236 | cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro | 2e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-20 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 2e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-18 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 8e-17 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 2e-16 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 3e-16 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 1e-15 | |
| PRK08581 | 619 | PRK08581, PRK08581, N-acetylmuramoyl-L-alanine ami | 2e-15 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 7e-15 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 1e-14 | |
| PRK08581 | 619 | PRK08581, PRK08581, N-acetylmuramoyl-L-alanine ami | 1e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-14 | |
| cd02621 | 243 | cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al | 1e-13 | |
| cd02698 | 239 | cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th | 1e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-13 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 9e-13 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 2e-12 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 3e-12 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 7e-12 | |
| PRK13914 | 481 | PRK13914, PRK13914, invasion associated secreted e | 1e-11 | |
| pfam04003 | 109 | pfam04003, Utp12, Dip2/Utp12 Family | 3e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-11 | |
| PRK08581 | 619 | PRK08581, PRK08581, N-acetylmuramoyl-L-alanine ami | 1e-10 | |
| PRK13914 | 481 | PRK13914, PRK13914, invasion associated secreted e | 1e-10 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 7e-10 | |
| COG5099 | 777 | COG5099, COG5099, RNA-binding protein of the Puf f | 9e-10 | |
| COG5422 | 1175 | COG5422, ROM1, RhoGEF, Guanine nucleotide exchange | 1e-09 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 2e-09 | |
| COG5422 | 1175 | COG5422, ROM1, RhoGEF, Guanine nucleotide exchange | 2e-09 | |
| pfam09595 | 183 | pfam09595, Metaviral_G, Metaviral_G glycoprotein | 3e-09 | |
| pfam05110 | 1154 | pfam05110, AF-4, AF-4 proto-oncoprotein | 3e-09 | |
| PHA03255 | 234 | PHA03255, PHA03255, BDLF3; Provisional | 3e-09 | |
| TIGR03835 | 871 | TIGR03835, termin_org_DnaJ, terminal organelle ass | 4e-09 | |
| COG5099 | 777 | COG5099, COG5099, RNA-binding protein of the Puf f | 5e-09 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 8e-09 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 9e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-08 | |
| pfam05110 | 1154 | pfam05110, AF-4, AF-4 proto-oncoprotein | 1e-08 | |
| TIGR03835 | 871 | TIGR03835, termin_org_DnaJ, terminal organelle ass | 2e-08 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 2e-08 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 2e-08 | |
| pfam05466 | 233 | pfam05466, BASP1, Brain acid soluble protein 1 (BA | 2e-08 | |
| pfam09595 | 183 | pfam09595, Metaviral_G, Metaviral_G glycoprotein | 3e-08 | |
| PHA03255 | 234 | PHA03255, PHA03255, BDLF3; Provisional | 3e-08 | |
| PRK14949 | 944 | PRK14949, PRK14949, DNA polymerase III subunits ga | 3e-08 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 3e-08 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 3e-08 | |
| COG3889 | 872 | COG3889, COG3889, Predicted solute binding protein | 3e-08 | |
| pfam09595 | 183 | pfam09595, Metaviral_G, Metaviral_G glycoprotein | 5e-08 | |
| pfam11489 | 671 | pfam11489, DUF3210, Protein of unknown function (D | 6e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-08 | |
| COG3889 | 872 | COG3889, COG3889, Predicted solute binding protein | 8e-08 | |
| COG3889 | 872 | COG3889, COG3889, Predicted solute binding protein | 9e-08 | |
| COG5099 | 777 | COG5099, COG5099, RNA-binding protein of the Puf f | 1e-07 | |
| pfam09595 | 183 | pfam09595, Metaviral_G, Metaviral_G glycoprotein | 1e-07 | |
| pfam03344 | 715 | pfam03344, Daxx, Daxx Family | 1e-07 | |
| COG5422 | 1175 | COG5422, ROM1, RhoGEF, Guanine nucleotide exchange | 2e-07 | |
| PHA03255 | 234 | PHA03255, PHA03255, BDLF3; Provisional | 2e-07 | |
| COG3889 | 872 | COG3889, COG3889, Predicted solute binding protein | 2e-07 | |
| PTZ00395 | 1560 | PTZ00395, PTZ00395, Sec24-related protein; Provisi | 2e-07 | |
| pfam03546 | 519 | pfam03546, Treacle, Treacher Collins syndrome prot | 2e-07 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 3e-07 | |
| pfam05466 | 233 | pfam05466, BASP1, Brain acid soluble protein 1 (BA | 3e-07 | |
| PLN03209 | 576 | PLN03209, PLN03209, translocon at the inner envelo | 3e-07 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 4e-07 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 4e-07 | |
| PRK11901 | 327 | PRK11901, PRK11901, hypothetical protein; Reviewed | 4e-07 | |
| PHA03255 | 234 | PHA03255, PHA03255, BDLF3; Provisional | 5e-07 | |
| pfam07010 | 259 | pfam07010, Endomucin, Endomucin | 5e-07 | |
| PRK14949 | 944 | PRK14949, PRK14949, DNA polymerase III subunits ga | 6e-07 | |
| COG3889 | 872 | COG3889, COG3889, Predicted solute binding protein | 6e-07 | |
| TIGR00601 | 378 | TIGR00601, rad23, UV excision repair protein Rad23 | 6e-07 | |
| pfam03344 | 715 | pfam03344, Daxx, Daxx Family | 7e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-07 | |
| PRK13914 | 481 | PRK13914, PRK13914, invasion associated secreted e | 8e-07 | |
| pfam06933 | 758 | pfam06933, SSP160, Special lobe-specific silk prot | 9e-07 | |
| COG5099 | 777 | COG5099, COG5099, RNA-binding protein of the Puf f | 1e-06 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 1e-06 | |
| COG3889 | 872 | COG3889, COG3889, Predicted solute binding protein | 1e-06 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 1e-06 | |
| PTZ00049 | 693 | PTZ00049, PTZ00049, cathepsin C-like protein; Prov | 1e-06 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 2e-06 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 2e-06 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 2e-06 | |
| COG3889 | 872 | COG3889, COG3889, Predicted solute binding protein | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-06 | |
| pfam01034 | 207 | pfam01034, Syndecan, Syndecan domain | 2e-06 | |
| pfam01034 | 207 | pfam01034, Syndecan, Syndecan domain | 2e-06 | |
| pfam07263 | 514 | pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | 2e-06 | |
| TIGR00601 | 378 | TIGR00601, rad23, UV excision repair protein Rad23 | 3e-06 | |
| pfam07263 | 514 | pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | 3e-06 | |
| cd02619 | 223 | cd02619, Peptidase_C1, C1 Peptidase family (MEROPS | 3e-06 | |
| pfam02063 | 296 | pfam02063, MARCKS, MARCKS family | 3e-06 | |
| TIGR00600 | 1034 | TIGR00600, rad2, DNA excision repair protein (rad2 | 3e-06 | |
| pfam07263 | 514 | pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | 4e-06 | |
| COG3889 | 872 | COG3889, COG3889, Predicted solute binding protein | 5e-06 | |
| pfam03344 | 715 | pfam03344, Daxx, Daxx Family | 5e-06 | |
| PRK12799 | 421 | PRK12799, motB, flagellar motor protein MotB; Revi | 5e-06 | |
| PRK13914 | 481 | PRK13914, PRK13914, invasion associated secreted e | 6e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-06 | |
| PTZ00395 | 1560 | PTZ00395, PTZ00395, Sec24-related protein; Provisi | 6e-06 | |
| pfam02063 | 296 | pfam02063, MARCKS, MARCKS family | 6e-06 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 7e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-06 | |
| pfam11702 | 509 | pfam11702, DUF3295, Protein of unknown function (D | 8e-06 | |
| PHA03255 | 234 | PHA03255, PHA03255, BDLF3; Provisional | 9e-06 | |
| PHA03255 | 234 | PHA03255, PHA03255, BDLF3; Provisional | 9e-06 | |
| pfam13254 | 414 | pfam13254, DUF4045, Domain of unknown function (DU | 9e-06 | |
| pfam09595 | 183 | pfam09595, Metaviral_G, Metaviral_G glycoprotein | 1e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 1e-05 | |
| COG3889 | 872 | COG3889, COG3889, Predicted solute binding protein | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| TIGR00601 | 378 | TIGR00601, rad23, UV excision repair protein Rad23 | 1e-05 | |
| PRK10905 | 328 | PRK10905, PRK10905, cell division protein DamX; Va | 1e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-05 | |
| cd02620 | 236 | cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro | 2e-05 | |
| pfam05110 | 1154 | pfam05110, AF-4, AF-4 proto-oncoprotein | 2e-05 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 2e-05 | |
| pfam11489 | 671 | pfam11489, DUF3210, Protein of unknown function (D | 2e-05 | |
| pfam11489 | 671 | pfam11489, DUF3210, Protein of unknown function (D | 2e-05 | |
| pfam11489 | 671 | pfam11489, DUF3210, Protein of unknown function (D | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-05 | |
| PRK11901 | 327 | PRK11901, PRK11901, hypothetical protein; Reviewed | 2e-05 | |
| pfam07263 | 514 | pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | 2e-05 | |
| PRK12799 | 421 | PRK12799, motB, flagellar motor protein MotB; Revi | 2e-05 | |
| pfam11702 | 509 | pfam11702, DUF3295, Protein of unknown function (D | 2e-05 | |
| pfam05642 | 727 | pfam05642, Sporozoite_P67, Sporozoite P67 surface | 2e-05 | |
| PRK13335 | 356 | PRK13335, PRK13335, superantigen-like protein; Rev | 2e-05 | |
| PTZ00203 | 348 | PTZ00203, PTZ00203, cathepsin L protease; Provisio | 2e-05 | |
| PHA03255 | 234 | PHA03255, PHA03255, BDLF3; Provisional | 3e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam03546 | 519 | pfam03546, Treacle, Treacher Collins syndrome prot | 3e-05 | |
| pfam01034 | 207 | pfam01034, Syndecan, Syndecan domain | 3e-05 | |
| PRK12799 | 421 | PRK12799, motB, flagellar motor protein MotB; Revi | 3e-05 | |
| pfam10428 | 419 | pfam10428, SOG2, RAM signalling pathway protein | 3e-05 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 3e-05 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 3e-05 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-05 | |
| pfam03344 | 715 | pfam03344, Daxx, Daxx Family | 4e-05 | |
| pfam01034 | 207 | pfam01034, Syndecan, Syndecan domain | 4e-05 | |
| pfam01034 | 207 | pfam01034, Syndecan, Syndecan domain | 4e-05 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 4e-05 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 4e-05 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 4e-05 | |
| pfam09528 | 707 | pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat | 4e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-05 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 6e-05 | |
| PRK14907 | 295 | PRK14907, rplD, 50S ribosomal protein L4; Provisio | 6e-05 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 6e-05 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 6e-05 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 7e-05 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 7e-05 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 7e-05 | |
| pfam04747 | 517 | pfam04747, DUF612, Protein of unknown function, DU | 7e-05 | |
| pfam04747 | 517 | pfam04747, DUF612, Protein of unknown function, DU | 8e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 9e-05 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 1e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 1e-04 | |
| COG3889 | 872 | COG3889, COG3889, Predicted solute binding protein | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| pfam07010 | 259 | pfam07010, Endomucin, Endomucin | 1e-04 | |
| pfam07263 | 514 | pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | 1e-04 | |
| pfam11702 | 509 | pfam11702, DUF3295, Protein of unknown function (D | 1e-04 | |
| COG5253 | 612 | COG5253, MSS4, Phosphatidylinositol-4-phosphate 5- | 1e-04 | |
| pfam05110 | 1154 | pfam05110, AF-4, AF-4 proto-oncoprotein | 2e-04 | |
| PHA03255 | 234 | PHA03255, PHA03255, BDLF3; Provisional | 2e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| pfam07010 | 259 | pfam07010, Endomucin, Endomucin | 2e-04 | |
| pfam06933 | 758 | pfam06933, SSP160, Special lobe-specific silk prot | 2e-04 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 2e-04 | |
| pfam01034 | 207 | pfam01034, Syndecan, Syndecan domain | 2e-04 | |
| pfam01034 | 207 | pfam01034, Syndecan, Syndecan domain | 2e-04 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 2e-04 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 2e-04 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 2e-04 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 2e-04 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 2e-04 | |
| COG3291 | 297 | COG3291, COG3291, FOG: PKD repeat [General functio | 2e-04 | |
| pfam04484 | 313 | pfam04484, DUF566, Family of unknown function (DUF | 2e-04 | |
| pfam05467 | 627 | pfam05467, Herpes_U47, Herpesvirus glycoprotein U4 | 2e-04 | |
| pfam03999 | 619 | pfam03999, MAP65_ASE1, Microtubule associated prot | 2e-04 | |
| PRK10856 | 331 | PRK10856, PRK10856, cytoskeletal protein RodZ; Pro | 2e-04 | |
| pfam03326 | 500 | pfam03326, Herpes_TAF50, Herpesvirus transcription | 2e-04 | |
| pfam08580 | 626 | pfam08580, KAR9, Yeast cortical protein KAR9 | 2e-04 | |
| PLN03091 | 459 | PLN03091, PLN03091, hypothetical protein; Provisio | 2e-04 | |
| TIGR04216 | 782 | TIGR04216, halo_surf_glyco, major cell surface gly | 2e-04 | |
| pfam07010 | 259 | pfam07010, Endomucin, Endomucin | 3e-04 | |
| pfam02063 | 296 | pfam02063, MARCKS, MARCKS family | 3e-04 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 3e-04 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 3e-04 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 3e-04 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 3e-04 | |
| COG3291 | 297 | COG3291, COG3291, FOG: PKD repeat [General functio | 3e-04 | |
| PRK10856 | 331 | PRK10856, PRK10856, cytoskeletal protein RodZ; Pro | 3e-04 | |
| PRK13914 | 481 | PRK13914, PRK13914, invasion associated secreted e | 4e-04 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 4e-04 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 4e-04 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 4e-04 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 4e-04 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 4e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 4e-04 | |
| COG5665 | 548 | COG5665, NOT5, CCR4-NOT transcriptional regulation | 4e-04 | |
| pfam01299 | 305 | pfam01299, Lamp, Lysosome-associated membrane glyc | 4e-04 | |
| pfam05466 | 233 | pfam05466, BASP1, Brain acid soluble protein 1 (BA | 5e-04 | |
| PRK12799 | 421 | PRK12799, motB, flagellar motor protein MotB; Revi | 5e-04 | |
| PRK12799 | 421 | PRK12799, motB, flagellar motor protein MotB; Revi | 5e-04 | |
| pfam11702 | 509 | pfam11702, DUF3295, Protein of unknown function (D | 5e-04 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 5e-04 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 5e-04 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 5e-04 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 5e-04 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 5e-04 | |
| pfam05110 | 1154 | pfam05110, AF-4, AF-4 proto-oncoprotein | 6e-04 | |
| pfam01034 | 207 | pfam01034, Syndecan, Syndecan domain | 6e-04 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 6e-04 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 6e-04 | |
| pfam08580 | 626 | pfam08580, KAR9, Yeast cortical protein KAR9 | 6e-04 | |
| PHA03151 | 259 | PHA03151, PHA03151, hypothetical protein; Provisio | 6e-04 | |
| PHA02638 | 417 | PHA02638, PHA02638, CC chemokine receptor-like pro | 6e-04 | |
| PHA02638 | 417 | PHA02638, PHA02638, CC chemokine receptor-like pro | 6e-04 | |
| PHA02638 | 417 | PHA02638, PHA02638, CC chemokine receptor-like pro | 6e-04 | |
| PRK08691 | 709 | PRK08691, PRK08691, DNA polymerase III subunits ga | 6e-04 | |
| PRK13914 | 481 | PRK13914, PRK13914, invasion associated secreted e | 7e-04 | |
| COG5422 | 1175 | COG5422, ROM1, RhoGEF, Guanine nucleotide exchange | 7e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 7e-04 | |
| pfam03344 | 715 | pfam03344, Daxx, Daxx Family | 7e-04 | |
| pfam08580 | 626 | pfam08580, KAR9, Yeast cortical protein KAR9 | 7e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 8e-04 | |
| pfam09528 | 707 | pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat | 8e-04 | |
| pfam09528 | 707 | pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat | 8e-04 | |
| PTZ00233 | 509 | PTZ00233, PTZ00233, variable surface protein Vir18 | 8e-04 | |
| PTZ00364 | 548 | PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs | 8e-04 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 9e-04 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 9e-04 | |
| COG1426 | 284 | COG1426, COG1426, Predicted transcriptional regula | 9e-04 | |
| pfam05110 | 1154 | pfam05110, AF-4, AF-4 proto-oncoprotein | 0.001 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 0.001 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 0.001 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.001 | |
| pfam03999 | 619 | pfam03999, MAP65_ASE1, Microtubule associated prot | 0.001 | |
| pfam08601 | 344 | pfam08601, PAP1, Transcription factor PAP1 | 0.001 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 0.001 | |
| pfam00802 | 263 | pfam00802, Glycoprotein_G, Pneumovirus attachment | 0.001 | |
| pfam07489 | 222 | pfam07489, Tir_receptor_C, Translocated intimin re | 0.001 | |
| pfam03035 | 226 | pfam03035, RNA_capsid, Calicivirus putative RNA po | 0.001 | |
| PHA03255 | 234 | PHA03255, PHA03255, BDLF3; Provisional | 0.002 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 0.002 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.002 | |
| PLN03209 | 576 | PLN03209, PLN03209, translocon at the inner envelo | 0.002 | |
| TIGR00601 | 378 | TIGR00601, rad23, UV excision repair protein Rad23 | 0.002 | |
| TIGR00601 | 378 | TIGR00601, rad23, UV excision repair protein Rad23 | 0.002 | |
| pfam11702 | 509 | pfam11702, DUF3295, Protein of unknown function (D | 0.002 | |
| PRK10905 | 328 | PRK10905, PRK10905, cell division protein DamX; Va | 0.002 | |
| pfam05642 | 727 | pfam05642, Sporozoite_P67, Sporozoite P67 surface | 0.002 | |
| pfam05642 | 727 | pfam05642, Sporozoite_P67, Sporozoite P67 surface | 0.002 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 0.002 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 0.002 | |
| PRK11907 | 814 | PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl | 0.002 | |
| pfam04747 | 517 | pfam04747, DUF612, Protein of unknown function, DU | 0.002 | |
| pfam05467 | 627 | pfam05467, Herpes_U47, Herpesvirus glycoprotein U4 | 0.002 | |
| pfam05467 | 627 | pfam05467, Herpes_U47, Herpesvirus glycoprotein U4 | 0.002 | |
| PRK10856 | 331 | PRK10856, PRK10856, cytoskeletal protein RodZ; Pro | 0.002 | |
| PHA02638 | 417 | PHA02638, PHA02638, CC chemokine receptor-like pro | 0.002 | |
| COG1426 | 284 | COG1426, COG1426, Predicted transcriptional regula | 0.002 | |
| pfam00802 | 263 | pfam00802, Glycoprotein_G, Pneumovirus attachment | 0.002 | |
| PRK12495 | 226 | PRK12495, PRK12495, hypothetical protein; Provisio | 0.002 | |
| PRK12495 | 226 | PRK12495, PRK12495, hypothetical protein; Provisio | 0.002 | |
| COG5347 | 319 | COG5347, COG5347, GTPase-activating protein that r | 0.002 | |
| COG5347 | 319 | COG5347, COG5347, GTPase-activating protein that r | 0.002 | |
| PRK10118 | 408 | PRK10118, PRK10118, flagellar hook-length control | 0.002 | |
| pfam04388 | 667 | pfam04388, Hamartin, Hamartin protein | 0.002 | |
| pfam05432 | 291 | pfam05432, BSP_II, Bone sialoprotein II (BSP-II) | 0.002 | |
| TIGR04319 | 175 | TIGR04319, SerAla_Lrha_rpt, surface protein repeat | 0.002 | |
| PHA03273 | 486 | PHA03273, PHA03273, envelope glycoprotein C; Provi | 0.002 | |
| pfam04415 | 416 | pfam04415, DUF515, Protein of unknown function (DU | 0.002 | |
| pfam09786 | 559 | pfam09786, CytochromB561_N, Cytochrome B561, N ter | 0.002 | |
| pfam12361 | 318 | pfam12361, DBP, Duffy-antigen binding protein | 0.002 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 0.003 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 0.003 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 0.003 | |
| PHA03151 | 259 | PHA03151, PHA03151, hypothetical protein; Provisio | 0.003 | |
| PHA02638 | 417 | PHA02638, PHA02638, CC chemokine receptor-like pro | 0.003 | |
| pfam03035 | 226 | pfam03035, RNA_capsid, Calicivirus putative RNA po | 0.003 | |
| TIGR04319 | 175 | TIGR04319, SerAla_Lrha_rpt, surface protein repeat | 0.003 | |
| PHA03273 | 486 | PHA03273, PHA03273, envelope glycoprotein C; Provi | 0.003 | |
| PHA03273 | 486 | PHA03273, PHA03273, envelope glycoprotein C; Provi | 0.003 | |
| PHA03273 | 486 | PHA03273, PHA03273, envelope glycoprotein C; Provi | 0.003 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 0.003 | |
| pfam05110 | 1154 | pfam05110, AF-4, AF-4 proto-oncoprotein | 0.004 | |
| PHA03255 | 234 | PHA03255, PHA03255, BDLF3; Provisional | 0.004 | |
| pfam07263 | 514 | pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | 0.004 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.004 | |
| PRK13335 | 356 | PRK13335, PRK13335, superantigen-like protein; Rev | 0.004 | |
| pfam01456 | 143 | pfam01456, Mucin, Mucin-like glycoprotein | 0.004 | |
| COG5665 | 548 | COG5665, NOT5, CCR4-NOT transcriptional regulation | 0.004 | |
| PHA02638 | 417 | PHA02638, PHA02638, CC chemokine receptor-like pro | 0.004 | |
| pfam00802 | 263 | pfam00802, Glycoprotein_G, Pneumovirus attachment | 0.004 | |
| PRK12495 | 226 | PRK12495, PRK12495, hypothetical protein; Provisio | 0.004 | |
| PHA03273 | 486 | PHA03273, PHA03273, envelope glycoprotein C; Provi | 0.004 | |
| pfam04415 | 416 | pfam04415, DUF515, Protein of unknown function (DU | 0.004 | |
| pfam04415 | 416 | pfam04415, DUF515, Protein of unknown function (DU | 0.004 | |
| pfam12361 | 318 | pfam12361, DBP, Duffy-antigen binding protein | 0.004 | |
| PRK13108 | 460 | PRK13108, PRK13108, prolipoprotein diacylglyceryl | 0.004 | |
| PRK13108 | 460 | PRK13108, PRK13108, prolipoprotein diacylglyceryl | 0.004 | |
| pfam12935 | 246 | pfam12935, Sec16_N, Vesicle coat trafficking prote | 0.004 | |
| pfam11816 | 320 | pfam11816, DUF3337, Domain of unknown function (DU | 0.004 | |
| COG3266 | 292 | COG3266, DamX, Uncharacterized protein conserved i | 0.004 | |
| pfam13634 | 106 | pfam13634, Nucleoporin_FG, Nucleoporin FG repeat r | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 2e-69
Identities = 97/293 (33%), Positives = 157/293 (53%), Gaps = 11/293 (3%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L+GH G + C + PDG+ +A+ D I +W + E + + GHTG V D+ S DG
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADG 63
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
++ + S+D+T+ +WDLE G+ ++ + GH+++V+S G++ ++S S D T+KVWD
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI-LSSSSRDKTIKVWDV 122
Query: 478 RKKNQAVSMNN-TYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTG 536
++ T V SVAF+ V + D IK+WDLRT V L GH+ V
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 537 LSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYV 596
++ SPDG +LS++ D T+++WD+ +C+ + GH E + A+S G +
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLS----TGKCLGTLRGH----ENGVNSVAFSPDGYLL 234
Query: 597 TAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
+GS D + +WD T L GH SV + + P + S S+D TI +
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 1e-58
Identities = 105/349 (30%), Positives = 154/349 (44%), Gaps = 64/349 (18%)
Query: 1078 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137
L GH V + S D L+ATGSGD T+KVW L+ G+ ++L H V V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1197
Y + S D ++ WD + E + TL GH V S+ S D ++++ S D+T+K
Sbjct: 65 YLASGSSDKTIRLWDLETGECVRTLT------GHTSYVSSVAFSPDGRILSSSSRDKTIK 118
Query: 1198 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN 1257
VW ++ G C +L H D V V F S DG
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAF----------SPDGTF------------------- 149
Query: 1258 VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV 1317
V + D ++KLW L R+ K ++ L T +V
Sbjct: 150 --------VASSSQDGTIKLWDL-----------------RTGKCVATLTGHT----GEV 180
Query: 1318 LCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1377
SPD + L S D T+K++ L T K +L GH+ V S+ S D L+A+GS D
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240
Query: 1378 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
T++VW L G+C ++L H +SVT + + P + S DG ++ WD
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 2e-54
Identities = 83/254 (32%), Positives = 132/254 (51%), Gaps = 10/254 (3%)
Query: 397 NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPV 456
+ GHTG V + FS DG + T S D T+ VWDLE G+ ++ +KGH+ V
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 457 RRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN-TYQVTSVAFNDTAECVLTGGIDNDIKM 515
G L + SD T+++WD ++ T V+SVAF+ + + D IK+
Sbjct: 61 ADGTYLASGSSDK-TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 516 WDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG 575
WD+ T + LRGH+D V ++ SPDG+++ S++ D T+++WD+R +CV ++G
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR----TGKCVATLTG 175
Query: 576 HQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKE 635
H + A+S G + + S+D + +WD +T + L GH VN V F P
Sbjct: 176 H----TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231
Query: 636 PIIMSASSDKTIYL 649
++ S S D TI +
Sbjct: 232 YLLASGSEDGTIRV 245
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 5e-54
Identities = 91/253 (35%), Positives = 138/253 (54%), Gaps = 11/253 (4%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L+GH G + DG Y+AS D+ I +W + E + ++GHT V + FS DG
Sbjct: 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL-ETGECVRTLTGHTSYVSSVAFSPDG 105
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ + S D+T+ VWD+E G+ + ++GH+ +VNS +AS S D T+K+WD
Sbjct: 106 RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA-FSPDGTFVASSSQDGTIKLWDL 164
Query: 478 RKKN-QAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTG 536
R A +T +V SVAF+ E +L+ D IK+WDL T + LRGH + V
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224
Query: 537 LSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYV 596
++ SPDG + S + D T+R+WD+R CV+ +SGH + ++ AWS G +
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLRT----GECVQTLSGHTN----SVTSLAWSPDGKRL 276
Query: 597 TAGSADKCVYIWD 609
+GSAD + IWD
Sbjct: 277 ASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 6e-52
Identities = 87/320 (27%), Positives = 139/320 (43%), Gaps = 39/320 (12%)
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDTGSYALSVC-FVPGDRH 939
+GH V +AFS D L + +K+W+ + LRT+ + + +
Sbjct: 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65
Query: 940 VLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDK 999
+ G+ D + + D+ GE + + H+ + SVA PD +I + + DK
Sbjct: 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG---------RI-LSSSSRDK 115
Query: 1000 SVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL 1059
++K+W +E + R H + V SPD +A S
Sbjct: 116 TIKVWDVE--------TGKCLTTLRGH-------------TDWVNSVAFSPDGTFVASSS 154
Query: 1060 LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1119
D T+K++ L T K +L GH V S+ S D + + S D T+K+W L G C +
Sbjct: 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214
Query: 1120 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLD 1179
L HE+ V V F P + + S+DG ++ WD E + T L GH V SL
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT------LSGHTNSVTSLA 268
Query: 1180 MSYDSTLIATGSGDRTVKVW 1199
S D +A+GS D T+++W
Sbjct: 269 WSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 1e-51
Identities = 82/279 (29%), Positives = 123/279 (44%), Gaps = 36/279 (12%)
Query: 1168 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1227
L GH V + S D L+ATGSGD T+KVW L+ G+ ++L H V V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 1228 YFFTTSKDGRVKQWDADNFERIVTL----------HFNPNVYLPLQIQVVTGGGDKSVKL 1277
Y + S D ++ WD + E + TL F+P+ + + + DK++K+
Sbjct: 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI-----LSSSSRDKTIKV 119
Query: 1278 WQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTT 1337
W +E + R H + V SPD +A S D T
Sbjct: 120 WDVE--------TGKCLTTLRGH-------------TDWVNSVAFSPDGTFVASSSQDGT 158
Query: 1338 VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1397
+K++ L T K +L GH V S+ S D + + S D T+K+W L G C +L H
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218
Query: 1398 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
E+ V V F P + + S+DG ++ WD E + TL
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 5e-35
Identities = 83/274 (30%), Positives = 131/274 (47%), Gaps = 35/274 (12%)
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDTG--SYALSVCFVPGDR 938
+GH VR +A S+D L S + +++W+ + C+RT+ TG SY SV F P R
Sbjct: 48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGR 106
Query: 939 HVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGD 998
+ ++D + + D+ G+ L + H+ + SVA PD V + D
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG----------TFVASSSQD 156
Query: 999 KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVS 1058
++KLW L R+ K ++ L T +V SPD + L S
Sbjct: 157 GTIKLWDL-----------------RTGKCVATLTGHT----GEVNSVAFSPDGEKLLSS 195
Query: 1059 LLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118
D T+K++ L T K +L GH+ V S+ S D L+A+GS D T++VW L G+C +
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255
Query: 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152
+L H +SVT + + P + S DG ++ WD
Sbjct: 256 TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 5e-35
Identities = 71/268 (26%), Positives = 96/268 (35%), Gaps = 89/268 (33%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+PE+FD RE K + V DQG C SCW
Sbjct: 1 LPESFDWRE-----KGAVTPVKDQGQCGSCW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A SA + R CI++ V LS Q L+ C T + C GG A+
Sbjct: 27 ---AFSAVGALEGRYCIKTGKLV--SLSEQQLV-DC--DTGNNG------CNGGLPDNAF 72
Query: 2294 MYWI-NAGLVDGGDY---GTH-----DVSMGRYIEGIGHAASVMGSSNPE---------- 2334
Y N G+V DY S +Y + I V N E
Sbjct: 73 EYIKKNGGIVTESDYPYTAHDGTCKFKKSNSKYAK-IKGYGDV--PYNDEEALQAALAKN 129
Query: 2335 ------VNNFEKVIRLYS--------CEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSY 2380
++ +E +LY C G ++ H+V I+G+G + PYW+ NS+
Sbjct: 130 GPVSVAIDAYEDDFQLYKSGVYKHTECSGELD----HAVLIVGYGTEN-GVPYWIVKNSW 184
Query: 2381 NQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
WGE G F+I RGVN C I
Sbjct: 185 GTDWGENGYFRIARGVNECGIASEASYP 212
|
Length = 213 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 7e-34
Identities = 104/309 (33%), Positives = 159/309 (51%), Gaps = 20/309 (6%)
Query: 349 SNLFAPIMLLEGHGGEIFCSKYHPDGQYIAS-SGYDRQIFIWSVYGECENIGVMSGHTGA 407
S I LEGH + + PDG+ +AS S D I +W + + + ++GHT
Sbjct: 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDP 200
Query: 408 VMDLKFSTDG-CHIFTCSTDQTLAVWDLEKGQRIK-KMKGHSTFVNSCDPVRRGQLLIAS 465
V L FS DG I + S+D T+ +WDL G+ ++ + GHS V S L+AS
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS--FSPDGSLLAS 258
Query: 466 GSDDCTVKVWDPRKKNQAVSMN--NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV 523
GS D T+++WD R + + ++ V SVAF+ + + +G D +++WDL T +
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318
Query: 524 VQ--KLRGHSDTVTGLSLSPDGSYILSNAM-DNTVRIWDIRPYVPGERCVKVMSGHQHNF 580
+ L+GH V+ LS SPDGS ++S D T+R+WD+R + +K + GH
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR----TGKPLKTLEGH---- 370
Query: 581 EKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640
N+L ++S G V++GS D V +WD +T + L GH V + F P + S
Sbjct: 371 -SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLAS 429
Query: 641 ASSDKTIYL 649
SSD TI L
Sbjct: 430 GSSDNTIRL 438
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 3e-33
Identities = 117/427 (27%), Positives = 178/427 (41%), Gaps = 41/427 (9%)
Query: 1023 SRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY--G 1080
+ L E+ + SPD +LL D T+K++ LD + I
Sbjct: 48 DSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL 107
Query: 1081 HKLPVLSLDMSY---DSTLIATGSGDRTVKVWGL-DYGDCHKSLLAHEDSVTGVTFVPKT 1136
H V L +S +S L+A+ S D TVK+W L G ++L H +SVT + F P
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167
Query: 1137 HYFFTTS-KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDST-LIATGSGDR 1194
+ S DG +K WD + + TL GH PV SL S D LIA+GS D
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLA------GHTDPVSSLAFSPDGGLLIASGSSDG 221
Query: 1195 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV---- 1250
T+++W L G +S L+ +F P + S DG ++ WD + ++
Sbjct: 222 TIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281
Query: 1251 --TLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHT 1308
+ + P + +G D +V+LW LE + +
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-------------- 327
Query: 1309 RTLKLEEQVLCARVSPDSKLLAVSL-LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYD 1367
E V SPD LL D T++++ L T K +L GH VLS+ S D
Sbjct: 328 -----EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPD 381
Query: 1368 STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1427
++++GS D TV++W L G ++L H VT + F P + S D ++ WD
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441
Query: 1428 DNFERIV 1434
+ V
Sbjct: 442 KTSLKSV 448
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 4e-33
Identities = 67/207 (32%), Positives = 99/207 (47%), Gaps = 45/207 (21%)
Query: 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSV-YGECENIGVMSGHTGAVMDLK 412
+ L GH + + PDG ++ASS D I +W + G+C + ++GHTG V +
Sbjct: 127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--VATLTGHTGEVNSVA 184
Query: 413 FSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTV 472
FS DG + + S+D T+ +WDL G+ + ++GH VNS L+ASGS+D T+
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA-FSPDGYLLASGSEDGTI 243
Query: 473 KVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532
+V WDLRT VQ L GH++
Sbjct: 244 RV-----------------------------------------WDLRTGECVQTLSGHTN 262
Query: 533 TVTGLSLSPDGSYILSNAMDNTVRIWD 559
+VT L+ SPDG + S + D T+RIWD
Sbjct: 263 SVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-31
Identities = 63/242 (26%), Positives = 89/242 (36%), Gaps = 75/242 (30%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+PE+FD R++ + V DQG C SCW
Sbjct: 1 LPESFDWRKKG-----AVTPVKDQGQCGSCW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A SA + R CI++ V LS Q L+ +C+ C GG A+
Sbjct: 27 ---AFSATGALEGRYCIKTGKLV--SLSEQQLV----DCSGGGNCG----CNGGLPDNAF 73
Query: 2294 MYWI-NAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEK----VIRLYSCE 2348
Y N GL Y Y + AS +F+ + C
Sbjct: 74 EYIKKNGGLETESCY--------PYTGSVAIDAS----------DFQFYKSGIYDHPGCG 115
Query: 2349 GSINPRYIHSVKIIGWGKSSQN-EPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVM 2406
+ H+V I+G+G +N + YW+ NS+ WGE G F+I RG N C IE SV
Sbjct: 116 ---SGTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVA 172
Query: 2407 AG 2408
+
Sbjct: 173 SY 174
|
Length = 175 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 129 bits (324), Expect = 4e-31
Identities = 114/471 (24%), Positives = 194/471 (41%), Gaps = 43/471 (9%)
Query: 102 FSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGV 161
S + + ++ + G L D+ + L D+ L GH+
Sbjct: 12 KSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDL----SSLLLRGHEDS 67
Query: 162 ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM--AAHLTEVWGVCVMREDSYLI 219
IT I F P ++S + D +K+WD D G+ H + V + + D I
Sbjct: 68 ITSIAF--SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125
Query: 220 ---SGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELK 276
S S D +K+W++ + L + PD + + +K
Sbjct: 126 LLASSSLDGTVKLWDLST----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181
Query: 277 NLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNY 336
K L + T + AF D + + S + ++D
Sbjct: 182 LWDLRTGKPLSTL------AGHTDPVSSLAFSPDGGLLIASGSSDGT---IRLWDLSTGK 232
Query: 337 KVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE 396
++ L GH + S + PDG +AS D I +W +
Sbjct: 233 LLRST----------------LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275
Query: 397 NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK--GHSTFVNSCD 454
+ +SGH+ +V+ + FS DG + + S+D T+ +WDLE G+ + + GH V+S
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 455 PVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIK 514
G LL++ GSDD T+++WD R ++ V SV+F+ V +G D ++
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVR 395
Query: 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP 565
+WDL T S+++ L GH+ VT L SPDG + S + DNT+R+WD++ +
Sbjct: 396 LWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 127 bits (319), Expect = 2e-30
Identities = 118/431 (27%), Positives = 182/431 (42%), Gaps = 60/431 (13%)
Query: 978 DQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1037
D + P +++G D ++KLW L+ + + SL
Sbjct: 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLD---------------NGEKLIKSLEGLHDS 110
Query: 1038 KLEEQVLCARVSPDSK--LLAVSLLDTTVKIFFLDT-FKFFISLYGHKLPVLSLDMS-YD 1093
+ + A SPD LLA S LD TVK++ L T K +L GH V SL S
Sbjct: 111 SVSK---LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167
Query: 1094 STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT-SKDGRVKQWD 1152
L + S D T+K+W L G +L H D V+ + F P + S DG ++ WD
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227
Query: 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD-CHKSLL 1211
+ + + +L GH V+S S D +L+A+GS D T+++W L ++L
Sbjct: 228 LSTGKLLRS-----TLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281
Query: 1212 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN-------VYLPLQI 1264
H SV V F P + S DG V+ WD + + + +L + + P
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341
Query: 1265 QVVTGGG-DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1323
+V+GG D +++LW L +TL+ VL S
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGK----------------------PLKTLEGHSNVLSVSFS 379
Query: 1324 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1383
PD ++++ D TV+++ L T +L GH V SLD S D +A+GS D T+++W
Sbjct: 380 PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
Query: 1384 GLDYGDCHKSL 1394
L S
Sbjct: 440 DLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (316), Expect = 4e-30
Identities = 100/406 (24%), Positives = 168/406 (41%), Gaps = 44/406 (10%)
Query: 852 LLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIW 911
LL ++ + L ++ L +H + + L S+ VK+W
Sbjct: 80 LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139
Query: 912 NRPSLSCLRTIDTGSYA--LSVCFVPGDRHVLVG-TKDGRLLIVDIGAGEILEDIPAHSQ 968
+ + L G S+ F P + + G + DG + + D+ G+ L + H+
Sbjct: 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD 199
Query: 969 ELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKV 1028
+ S+A PD + + +G D +++LW D T + RS
Sbjct: 200 PVSSLAFSPD---------GGLLIASGSSDGTIRLW-----------DLSTGKLLRS--- 236
Query: 1029 LSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF-KFFISLYGHKLPVLS 1087
TL + + SPD LLA D T++++ L + +L GH VLS
Sbjct: 237 -------TLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 1088 LDMSYDSTLIATGSGDRTVKVWGLDYGDC--HKSLLAHEDSVTGVTFVPKTHYFFTT-SK 1144
+ S D L+A+GS D TV++W L+ G +L HE V+ ++F P + S
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 1145 DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1204
DG ++ WD + + TL VLS+ S D ++++GS D TV++W L G
Sbjct: 350 DGTIRLWDLRTGKPLKTLE-------GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402
Query: 1205 DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1250
++L H VT + F P + S D ++ WD + V
Sbjct: 403 SLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 122 bits (305), Expect = 1e-28
Identities = 117/429 (27%), Positives = 181/429 (42%), Gaps = 45/429 (10%)
Query: 1023 SRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK 1082
K+L +L S LL L D+ V + L + + L GH+
Sbjct: 10 ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSS----LLLRGHE 65
Query: 1083 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVPKTHYFF 1140
+ S+ S D L+ +GS D T+K+W LD G+ L H+ SV+ +
Sbjct: 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125
Query: 1141 ---TTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMS-YDSTLIATGSGDRTV 1196
++S DG VK WD +++ +L GH V SL S L + S D T+
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIR-----TLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT-SKDGRVKQWDADNFERIVTLHFN 1255
K+W L G +L H D V+ + F P + S DG ++ WD + + +
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 1256 P-----NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310
+ + P + +G D +++LW D+ S +L L +
Sbjct: 241 HSDSVVSSFSPDGSLLASGSSDGTIRLW----------------DLRSSSSLLRTLSGHS 284
Query: 1311 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT--FKFFISLYGHKLPVLSLDMSYDS 1368
VL SPD KLLA D TV+++ L+T ++L GH+ PV SL S D
Sbjct: 285 ----SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340
Query: 1369 TLIATG-SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1427
+L+ +G S D T+++W L G K+L H +V V+F P + S DG V+ WD
Sbjct: 341 SLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDL 399
Query: 1428 DNFERIVTL 1436
+ L
Sbjct: 400 STGSLLRNL 408
|
Length = 466 |
| >gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 47/131 (35%), Positives = 57/131 (43%), Gaps = 41/131 (31%)
Query: 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVW 2234
PE+FDARE+WP C IG++ DQG C SCW
Sbjct: 1 PESFDAREKWPNCI-SIGEIRDQGNCGSCW------------------------------ 29
Query: 2235 DKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWM 2294
A SA SDR+CIQS G+ +LS Q L+ C+ C C GG AAW
Sbjct: 30 --AFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGD--------GCNGGYPDAAWK 79
Query: 2295 YWINAGLVDGG 2305
Y G+V GG
Sbjct: 80 YLTTTGVVTGG 90
|
Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 116 bits (290), Expect = 9e-27
Identities = 118/486 (24%), Positives = 206/486 (42%), Gaps = 61/486 (12%)
Query: 169 SQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELK 228
S +++ D+ V + D + + H + + + L+SGS+D +K
Sbjct: 35 SSESGILLLALLSDSLVSLPDLSSL----LLRGHEDSITSIAFSPDGELLLSGSSDGTIK 90
Query: 229 VWNVRDRSD-IDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQ 287
+W++ + I + + S L S D + ++ + +L +LST
Sbjct: 91 LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST------- 143
Query: 288 VFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGR 347
+L + + ++ AF + S + + ++D
Sbjct: 144 PGKLIRTLEGHSESVTSLAF---SPDGKLLASGSSLDGTIKLWDLRTG------------ 188
Query: 348 TSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECENIGVMSGHTG 406
P+ L GH + + PDG IAS D I +W + +SGH+
Sbjct: 189 -----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243
Query: 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLE-KGQRIKKMKGHSTFVNSCDPVRRGQLLIAS 465
+V+ FS DG + + S+D T+ +WDL ++ + GHS+ V S G+LL AS
Sbjct: 244 SVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL-AS 301
Query: 466 GSDDCTVKVWDPRKKNQAVSMNNTY---QVTSVAFNDTAECVLTGG-IDNDIKMWDLRTN 521
GS D TV++WD S+ V+S++F+ +++GG D I++WDLRT
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361
Query: 522 SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE 581
++ L GHS V +S SPDG + S + D TVR+WD+ ++ + GH
Sbjct: 362 KPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG----SLLRNLDGHTSR-- 414
Query: 582 KNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSA 641
+ +S G + +GS+D + +WD T S+ V F P ++ S
Sbjct: 415 --VTSLDFSPDGKSLASGSSDNTIRLWDLKT------------SLKSVSFSPDGKVLASK 460
Query: 642 SSDKTI 647
SSD ++
Sbjct: 461 SSDLSV 466
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-26
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 13/202 (6%)
Query: 36 GRFLATGASED-VIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAY 94
G +LA+G+S+ + +WDL E L G V ++ + D L+ +
Sbjct: 63 GTYLASGSSDKTIRLWDLETGECV-------RT---LTGHTSYVSSVAFSPDGRILSSSS 112
Query: 95 TNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHR 154
+ ++K + ++T ++T GH + + + P G +A+ S+D I LWD+ +
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172
Query: 155 LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRE 214
L+GH G + + F S G + SS+ D +K+WD TG C T+ H V V +
Sbjct: 173 LTGHTGEVNSVAF-SPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230
Query: 215 DSYLISGSNDAELKVWNVRDRS 236
L SGS D ++VW++R
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGE 252
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-26
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
L G V ++ + D LA +G++K + L+T +++ T GH + + G
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDA 190
LA+GS D I LWD+ + L+GH ++ + F P + SS++D +K+WD
Sbjct: 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS--PDGRILSSSSRDKTIKVWDV 122
Query: 191 DTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVR 233
+TG C T+ H V V + +++ S S D +K+W++R
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-26
Identities = 111/395 (28%), Positives = 171/395 (43%), Gaps = 40/395 (10%)
Query: 1057 VSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1116
V T+ + K + + L +LSL S L+ D V + L
Sbjct: 2 VDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL-- 59
Query: 1117 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV-TLHFFISLYGHKLPV 1175
L HEDS+T + F P + S DG +K WD DN E+++ +L KL +
Sbjct: 60 --LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117
Query: 1176 LSLDMSYDSTLIATGSGDRTVKVWGL-DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS- 1233
S D +S L+A+ S D TVK+W L G ++L H +SVT + F P + S
Sbjct: 118 SSPD--GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175
Query: 1234 KDGRVKQWDADNFERIVTLHFNPNVYLPL------QIQVVTGGGDKSVKLWQLELVSVNR 1287
DG +K WD + + TL + + L + + +G D +++LW
Sbjct: 176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW--------- 226
Query: 1288 EADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF- 1346
D T + RS TL + + SPD LLA D T++++ L +
Sbjct: 227 --DLSTGKLLRS----------TLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS 274
Query: 1347 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC--HKSLLAHEDSVTGV 1404
+L GH VLS+ S D L+A+GS D TV++W L+ G +L HE V+ +
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334
Query: 1405 TFVPKTHYFFTT-SKDGRVKQWDADNFERIVTLHI 1438
+F P + S DG ++ WD + + TL
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-26
Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 14/197 (7%)
Query: 37 RFLATGASED--VIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAY 94
+ + +S D + +WD+ + L G H V ++ + D + +A +
Sbjct: 105 GRILSSSSRDKTIKVWDVETGKCLTTLRG--HTDW--------VNSVAFSPDGTFVASSS 154
Query: 95 TNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHR 154
+G++K + L T ++T TGH + + + P G +L + S D I LWD+ L
Sbjct: 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214
Query: 155 LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRE 214
L GH+ + + F P + + S ++D +++WD TG+C +T++ H V + +
Sbjct: 215 LRGHENGVNSVAFS--PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272
Query: 215 DSYLISGSNDAELKVWN 231
L SGS D +++W+
Sbjct: 273 GKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 110 ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS 169
T GH +T + + P G LATGS D I +WD+ L L GH G + D+ +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKV 229
++ S + D +++WD +TG+C +T+ H + V V + L S S D +KV
Sbjct: 62 D--GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 230 WNVRDRSDIDT 240
W+V + T
Sbjct: 120 WDVETGKCLTT 130
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 3e-23
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
Query: 1307 HTRTLKL-EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS 1365
RTLK V C SPD KLLA D T+K++ L+T + +L GH PV + S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 1366 YDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1425
D T +A+GS D+T+++W L+ G+C ++L H V+ V F P ++S+D +K W
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 1426 DADNFERIVTLHICSCSLNS 1445
D + + + TL + +NS
Sbjct: 121 DVETGKCLTTLRGHTDWVNS 140
|
Length = 289 |
| >gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 7e-23
Identities = 58/253 (22%), Positives = 83/253 (32%), Gaps = 72/253 (28%)
Query: 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVW 2234
PE+ D RE K + V DQG+C SCW
Sbjct: 1 PESVDWRE-----KGAVTPVKDQGSCGSCW------------------------------ 25
Query: 2235 DKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWM 2294
A S + I++ LS Q L+ +C+ C GG+ A+
Sbjct: 26 --AFSTVGALEGAYAIKTG--KLVSLSEQQLV----DCSTSGNNG----CNGGNPDNAFE 73
Query: 2295 YWINAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIR----------- 2343
Y N GL DY A + G SN + E +
Sbjct: 74 YVKNGGLASESDYPYTGKDGTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVA 133
Query: 2344 -------------LYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLF 2390
+YS N H+V ++G+G + YW+ NS+ WGE+G
Sbjct: 134 IDASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYG-TENGVDYWIVKNSWGTSWGEKGYI 192
Query: 2391 KIRRGVNMCSIED 2403
+I RG N+C I
Sbjct: 193 RIARGSNLCGIAS 205
|
Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 1e-21
Identities = 88/408 (21%), Positives = 164/408 (40%), Gaps = 39/408 (9%)
Query: 37 RFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN 96
L+ + + +WDL EK + H+ ++ SP+ +S LA + +
Sbjct: 79 LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLD 133
Query: 97 GSLKTFSLDTTDV-ISTFTGHKSAITVIQYDPLGHRLATGS-KDTDIVLWDVVAECGLHR 154
G++K + L T I T GH ++T + + P G LA+GS D I LWD+ L
Sbjct: 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193
Query: 155 LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRE 214
L+GH ++ + F S G + S + D +++WD TG ++ + ++ +
Sbjct: 194 LAGHTDPVSSLAF-SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252
Query: 215 DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINE 274
S L SGS+D +++W++R S S + + S D L + +
Sbjct: 253 GSLLASGSSDGTIRLWDLRS-SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV--R 309
Query: 275 LKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREK 334
L +L TGK + + +F D + + S + + ++D
Sbjct: 310 LWDLETGKLLSSLTLK------GHEGPVSSLSFSPDGSLLVSGGS---DDGTIRLWDLRT 360
Query: 335 NYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE 394
++ + + + PDG+ ++S D + +W +
Sbjct: 361 GKPLKTL------------------EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402
Query: 395 CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK 442
+ + GHT V L FS DG + + S+D T+ +WDL+ +
Sbjct: 403 -SLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449
|
Length = 466 |
| >gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 2e-21
Identities = 29/52 (55%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+VKIIGWG PYWL NS+ WGE G F+I RG N C IE V+AG
Sbjct: 186 HAVKIIGWG-VENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVAG 236
|
Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.5 bits (241), Expect = 1e-20
Identities = 100/439 (22%), Positives = 182/439 (41%), Gaps = 42/439 (9%)
Query: 69 LLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDT-TDVISTFTGH--KSAITVIQY 125
LLL G + + ++ + D L ++G++K + LD +I + G S +
Sbjct: 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118
Query: 126 DPLGHRLATGSKDTD--IVLWDVV-AECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKD 182
P G+ + S D + LWD+ + L GH +T + F G S+ D
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLD 177
Query: 183 TFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLI-SGSNDAELKVWNVRDRSDIDTE 241
+K+WD TG T+A H V + + LI SGS+D +++W++ + +
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237
Query: 242 DKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLN 301
++ S D L + I L +L + + + + S+ +
Sbjct: 238 LSGHSDSVVS--SFSPDGSLLASGSSDGTI--RLWDLRSSSSLLRTLSGHSSSVLSVAFS 293
Query: 302 IDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGH 361
D + + V ++D E + + L+GH
Sbjct: 294 PDGKLL-----------ASGSSDGTVRLWDLE---------------TGKLLSSLTLKGH 327
Query: 362 GGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHI 420
G + + PDG + S G D I +W + + + GH+ V+ + FS DG +
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWD-LRTGKPLKTLEGHSN-VLSVSFSPDGRVV 385
Query: 421 FTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK 480
+ STD T+ +WDL G ++ + GH++ V S D G+ +ASGS D T+++WD +
Sbjct: 386 SSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS-LASGSSDNTIRLWDLKTS 444
Query: 481 NQAVSMNNTYQVTSVAFND 499
++VS + +V + +D
Sbjct: 445 LKSVSFSPDGKVLASKSSD 463
|
Length = 466 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 96.0 bits (238), Expect = 2e-19
Identities = 69/316 (21%), Positives = 131/316 (41%), Gaps = 28/316 (8%)
Query: 1854 LAATAVAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESE 1913
L T A + +++F ++ +V+ + + TT P TT + P +
Sbjct: 404 LIITRTATNATTTTHKVVFHKAPDTTKSVIFVYTLVHVEPHKTTAVP----TTPSLPPAS 459
Query: 1914 STTTSSPESESTTTSSLVSESTTT--SSPESESTTTSSPESESTTTSSLVSESTTTSSPE 1971
+ T S ++ T + + ST +SP S +T+ + + T + + ++ T+
Sbjct: 460 TGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKT 519
Query: 1972 SESTTTSSPESE-STTTSSLVSESTTTSSPESEST---TTISPVSEST--TTSSPVSEST 2025
S++ +SP T++ S T T+S + ++ T SPV+ + +S S T
Sbjct: 520 SDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLT 579
Query: 2026 TTISPESESTTTSS----PASESTTTNNPKSESTTTNNP-------ASESITSSSPASES 2074
+ ++ T +S P S++ + P+S ST+T E+IT +P+ S
Sbjct: 580 SAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPS 639
Query: 2075 T---TTSSPASESTTTS--SPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEE 2129
T +T SP TTS S S+T+ P T P +T+ S+P+ + T +
Sbjct: 640 TTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPT 699
Query: 2130 QGVSPHSEKLSANEDP 2145
+ + E
Sbjct: 700 VTSTGGKANSTTKETS 715
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.6 bits (218), Expect = 8e-18
Identities = 84/346 (24%), Positives = 140/346 (40%), Gaps = 42/346 (12%)
Query: 825 TIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGG-----STDSVRHLRSI 879
T+K + K + + G + + L SL G + + L ++
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL 194
Query: 880 HAQGHHSEVRALAFSSDNLALVSACAS--QVKIWNRPSLSCLRTIDTGSYALSV-CFVPG 936
GH V +LAFS D L+++ +S +++W+ + LR+ +G V F P
Sbjct: 195 A--GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252
Query: 937 DRHVLVGTKDGRLLIVDIGAG-EILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTG 995
+ G+ DG + + D+ + +L + HS + SVA PD + +G
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL----------LASG 302
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL 1055
D +V+LW LE + + E V SPD LL
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGH-------------------EGPVSSLSFSPDGSLL 343
Query: 1056 AVSL-LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1114
D T++++ L T K +L GH VLS+ S D ++++GS D TV++W L G
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402
Query: 1115 DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
++L H VT + F P + S D ++ WD + V
Sbjct: 403 SLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 87.1 bits (215), Expect = 8e-17
Identities = 64/304 (21%), Positives = 111/304 (36%), Gaps = 12/304 (3%)
Query: 1875 NNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSES 1934
+ S ++ S + S +P + S TT TS T++ S
Sbjct: 484 EDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPP 543
Query: 1935 TTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVS-E 1993
T T+S + T+ ES ++ T+ S + + TT + S+ TS
Sbjct: 544 TGTTSVPN--ATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIP 601
Query: 1994 STTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNN--PK 2051
S++ S+P S ST+T ++ + T T P + +T SP TT+
Sbjct: 602 SSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGP 661
Query: 2052 SESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPE 2111
S+T+ P +T P +T+ S+P+ + T P ST + ++ T+ S
Sbjct: 662 GNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAV--PTVTSTGGKANSTTKETSGSTL 719
Query: 2112 SESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEFPNEDVFEHTFAEIP-----NIDH 2166
ST+ + T + S+ P A +P + DH
Sbjct: 720 MASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPTQHPDH 779
Query: 2167 SNQT 2170
SN +
Sbjct: 780 SNLS 783
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 85.2 bits (210), Expect = 2e-16
Identities = 66/267 (24%), Positives = 111/267 (41%), Gaps = 15/267 (5%)
Query: 1880 STVVMSTLNSLLSENTTTNSPESESTTTN-NPESESTTTSSPESESTTTSSLVSESTTTS 1938
S T +S L E+T SP S +T+ N S + ++P + S TT TS
Sbjct: 471 SGTPTGTTSSTLPEDT---SPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATS 527
Query: 1939 SPESESTTTS---SPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSEST 1995
T+ SP + +T+ + S T SP + + T + S TS++ +
Sbjct: 528 PTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQH 587
Query: 1996 -TTSSPESE-----STTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNN 2049
T SSP S+ S++ +P S ST+T+ ++ + T T S P++ +T +
Sbjct: 588 GTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLS 647
Query: 2050 PKSESTTTNNPAS--ESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTT 2107
P TT+ + S TS P T P +T+ S+P+ + T + S
Sbjct: 648 PGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKA 707
Query: 2108 SSPESESTTTSSPASESTTIEEQGVSP 2134
+S E++ ++ AS S E
Sbjct: 708 NSTTKETSGSTLMASTSPHTNEGAFRT 734
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 3e-16
Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 9/234 (3%)
Query: 1900 PESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSS 1959
+ + S SS ++ S E+ S S+P + ++
Sbjct: 150 ASPPAAGASPAAVASDAASSRQAALP--LSSPEETARAPSSPPAEPPPSTPPAAASPRPP 207
Query: 1960 LVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSS 2019
S + S+ S ++ +SS S S ++ P T +
Sbjct: 208 RRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPT 267
Query: 2020 PVSESTTTISPESESTTTSSPASES-----TTTNNPKSESTTTNNPASESITSSSPASES 2074
+ E++ P S SS +S + ++P S ++ AS S +SS +S S
Sbjct: 268 RIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSS 327
Query: 2075 TTTSSPASESTTTSSPASESTT--TSSPASESTTTSSPESESTTTSSPASESTT 2126
+T+SS S SP + + S SSP + +P+S + +
Sbjct: 328 STSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS 381
|
Length = 1352 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 82.9 bits (204), Expect = 1e-15
Identities = 59/271 (21%), Positives = 108/271 (39%), Gaps = 11/271 (4%)
Query: 1859 VAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTS 1918
VA V D + II T N+ +T + + +TT + + P + +
Sbjct: 394 VANPVADAKTLIITRTATNATTTTHKVVFHK--APDTTKSVIFVYTLVHVEPHKTTAVPT 451
Query: 1919 SPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTS 1978
+P +T VS + TS + +T+++ PE S T+ + ++ T + S + +
Sbjct: 452 TPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRT----TSATPNATSPTPAVT 507
Query: 1979 SPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTS 2038
+P + S TT TS T + S T T+S + ++ ++ ES T+
Sbjct: 508 TPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTN 567
Query: 2039 SPASESTTTNNPKSESTTTNNPASESITSSS--PASESTTTSSPASESTTTSSPASESTT 2096
+P S + + +T + S + P+S S+P S ST+T+ + +
Sbjct: 568 TPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSH---STPRSNSTSTTPLLTSAHP 624
Query: 2097 TSSPASESTTTSSPESESTTTSSPASESTTI 2127
T T S P + +T SP T
Sbjct: 625 TGGENITEETPSVPSTTHVSTLSPGPGPGTT 655
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-15
Identities = 42/301 (13%), Positives = 99/301 (32%), Gaps = 21/301 (6%)
Query: 1881 TVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESE----STTTSSLVSESTT 1936
T + + ++T + + ++ S+ T++ + ++ + + +T
Sbjct: 21 TSPTAYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFST 80
Query: 1937 TSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTT 1996
S S+S ++ +++ T ++ S TT + + E
Sbjct: 81 IDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPR 140
Query: 1997 TSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTT 2056
S + + S S T + S+ + ++ S+ + P++ + N+PK
Sbjct: 141 NSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPN 200
Query: 2057 TNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTT 2116
+N S T + +S S S + SE + + S +
Sbjct: 201 QSNSQPAS---------DDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQS 251
Query: 2117 TSSPASESTTIEEQGVSPHSEKLSANEDPEEFPNEDVFE------HTFAEIPNIDHSNQT 2170
S T Q P ++L P + DV + F P++ +++ +
Sbjct: 252 KKDKTETSNTKNPQ--LPTQDELKHKSKPAQSFENDVNQSNTRSTSLFETGPSLSNNDDS 309
Query: 2171 D 2171
Sbjct: 310 G 310
|
Length = 619 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 80.6 bits (198), Expect = 7e-15
Identities = 58/262 (22%), Positives = 102/262 (38%), Gaps = 6/262 (2%)
Query: 1873 TTNNNSESTVVMSTLNSLLSENT---TTNSPESESTTTNNPESESTTTSSPESESTTTSS 1929
TT N + T ++ + T + + S T + T+ ES ++
Sbjct: 507 TTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNT 566
Query: 1930 LVSESTTTSSPESESTTTSSPESESTTTSSLVS-ESTTTSSPESESTTTSSPESESTTTS 1988
T+ S + + TT + S+ TS S++ S+P S ST+T+ + + T
Sbjct: 567 NTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTG 626
Query: 1989 SLVSESTTTSSPESESTTTISPVSESTTTS--SPVSESTTTISPESESTTTSSPASESTT 2046
T S P + +T+SP TTS S S+T+ P T P +T+
Sbjct: 627 GENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATS 686
Query: 2047 TNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTT 2106
+ P + T S ++S E++ ++ AS S T+ A +T ++ +
Sbjct: 687 PSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPS 746
Query: 2107 TSSPESESTTTSSPASESTTIE 2128
TSS T +SP +
Sbjct: 747 TSSKLRPRWTFTSPPVTTKQAT 768
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 79.8 bits (196), Expect = 1e-14
Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 9/257 (3%)
Query: 1873 TTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTT-SSPESESTTTSSLV 1931
+ N+ S T + S T S +T+ TTT +SP + +T+ +
Sbjct: 494 SATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNAT 553
Query: 1932 SESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLV 1991
S T SP + + T + S TS++ + T S S T+ P S++ S+
Sbjct: 554 SPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGS----SPTSQQPGIPSSSHSTPR 609
Query: 1992 SESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTS--SPASESTTTNN 2049
S ST+T+ + + T T S P + +T+SP TTS S S+T+
Sbjct: 610 SNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRY 669
Query: 2050 PKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSS 2109
P T P + + S+P+ + T P ST + ++ T+ S ST+ +
Sbjct: 670 PGEVHVTEGMPNPNATSPSAPSGQKTAV--PTVTSTGGKANSTTKETSGSTLMASTSPHT 727
Query: 2110 PESESTTTSSPASESTT 2126
E TT A+
Sbjct: 728 NEGAFRTTPYNATTYLP 744
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-14
Identities = 40/258 (15%), Positives = 90/258 (34%), Gaps = 4/258 (1%)
Query: 1904 STTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSE 1963
T T+ +++T+ S S TS S T + + ++ + +
Sbjct: 18 PTLTSPTAYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKK 77
Query: 1964 STTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSE 2023
+T S S+S ++ +++ T ++ S TT+ + + E
Sbjct: 78 FSTIDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYE 137
Query: 2024 STTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASE 2083
+ + +S +S T+ S+ +N + S ++ P++ + +SP
Sbjct: 138 QPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPT 197
Query: 2084 STTTSSPASESTTTS-SPASESTTTSSPESESTTTSSPASESTTIEEQ---GVSPHSEKL 2139
S+ S T+ +S S +S + SE ++ S +
Sbjct: 198 QPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKDKTE 257
Query: 2140 SANEDPEEFPNEDVFEHT 2157
++N + P +D +H
Sbjct: 258 TSNTKNPQLPTQDELKHK 275
|
Length = 619 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 7e-14
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
Query: 33 NQEGRFLATGASED-VIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLA 91
+ +G F+A+ + + + +WDLR K A L G EV ++ + D +L
Sbjct: 144 SPDGTFVASSSQDGTIKLWDLR---------TGKCVATL-TGHTGEVNSVAFSPDGEKLL 193
Query: 92 VAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG 151
+ ++G++K + L T + T GH++ + + + P G+ LA+GS+D I +WD+
Sbjct: 194 SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253
Query: 152 LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
+ LSGH +T + + P + S + D ++IWD
Sbjct: 254 VQTLSGHTNSVTSLAWS--PDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 70/289 (24%), Positives = 92/289 (31%), Gaps = 107/289 (37%)
Query: 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVW 2234
P++FD + V V +QG C SC+
Sbjct: 2 PKSFDWGDVNNGFNYVSP-VRNQGGCGSCY------------------------------ 30
Query: 2235 DKAISAASVMSDRICIQS-----KGQVKPILSPQH-LICS-------------------- 2268
A ++ + RI I S GQ +PILSPQH L CS
Sbjct: 31 --AFASVYALEARIMIASNKTDPLGQ-QPILSPQHVLSCSQYSQGCDGGFPFLVGKFAED 87
Query: 2269 ------------------CT----NCTRMHTKT--PMSMCMGGDSAAAWMYW--INAGLV 2302
C C R + + C G + M W G +
Sbjct: 88 FGIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDE-MKWEIYRNGPI 146
Query: 2303 DGGDYGTHDVSMGRYIEGIGHAAS---VMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSV 2359
D Y EG+ H V N N FE N H+V
Sbjct: 147 VVAFEVYSDFDF--YKEGVYHHTDNDEVSDGDNDNFNPFELT----------N----HAV 190
Query: 2360 KIIGWGKSSQN-EPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMA 2407
++GWG+ E YW+ NS+ WGE+G FKIRRG N C IE +
Sbjct: 191 LLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVF 239
|
Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243 |
| >gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 49/209 (23%), Positives = 71/209 (33%), Gaps = 63/209 (30%)
Query: 2232 SVWDKAISAASVMSDRICIQSKGQVKPI-LSPQHLI-CSCTNCTRMHTKTPMSMCMGGDS 2289
S W A + S ++DRI I KG + LS Q +I C+ C GGD
Sbjct: 30 SCW--AHGSTSALADRINIARKGAWPSVYLSVQVVIDCAGGGS-----------CHGGDP 76
Query: 2290 AAAWMYWINAGLVDG--------------------------------------GDYGTHD 2311
+ Y G+ D DYG+
Sbjct: 77 GGVYEYAHKHGIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGS-- 134
Query: 2312 VS----MGRYIEGIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKS 2367
VS M I G + + ++ N V + Y + IN H + + GWG
Sbjct: 135 VSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLIN----HIISVAGWGVD 190
Query: 2368 SQNEPYWLCTNSYNQGWGEQGLFKIRRGV 2396
YW+ NS+ + WGE+G F+I
Sbjct: 191 ENGVEYWIVRNSWGEPWGERGWFRIVTSS 219
|
It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.0 bits (180), Expect = 4e-13
Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 16/221 (7%)
Query: 29 VTLKNQEGRFLATGASEDVI-IWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDS 87
V+ + +G LA+G+S+ I +WDLR L G V ++ + D
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLR---------SSSSLLRTLSGHSSSVLSVAFSPDG 296
Query: 88 SQLAVAYTNGSLKTFSLDTTDVIS--TFTGHKSAITVIQYDPLGHRLATG-SKDTDIVLW 144
LA ++G+++ + L+T ++S T GH+ ++ + + P G L +G S D I LW
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356
Query: 145 DVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLT 204
D+ L L GH V + F P V S + D V++WD TG + + H +
Sbjct: 357 DLRTGKPLKTLEGHSNV-LSVSFS--PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413
Query: 205 EVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDK 245
V + + L SGS+D +++W+++ + D
Sbjct: 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (180), Expect = 9e-13
Identities = 63/249 (25%), Positives = 118/249 (47%), Gaps = 20/249 (8%)
Query: 373 DGQYIASSGYDRQIFIWSVYGECENI-----------GVMSGHTGAVMDLKFSTDGCHIF 421
DG++ A++G +++I I+ ECE+I ++ + S +
Sbjct: 494 DGEFFATAGVNKKIKIF----ECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVA 549
Query: 422 TCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN 481
+ + + + VWD+ + Q + +MK H V S D L+ASGSDD +VK+W +
Sbjct: 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609
Query: 482 QAVSMNNTYQVTSVAF-NDTAECVLTGGIDNDIKMWDLRTNSV-VQKLRGHSDTVTGLSL 539
++ + V F +++ + G D+ + +DLR + + + GHS TV+ +
Sbjct: 610 SIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF 669
Query: 540 SPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG 599
D S ++S++ DNT+++WD+ + G + S H KN + SVS Y+ G
Sbjct: 670 V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV--GLSVSDGYIATG 726
Query: 600 SADKCVYIW 608
S V+++
Sbjct: 727 SETNEVFVY 735
|
Length = 793 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-12
Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 27/250 (10%)
Query: 1892 SENTTTNSPESESTTTNN---------PESESTTTSSPESE---STTTSSLVSESTTTSS 1939
+ S ++ PE + SSP +E ST ++ SS
Sbjct: 152 PPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSS 211
Query: 1940 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESE----STTTSSLVSEST 1995
P S S ++ +P + + S+ +SS ES S PE+E +L +
Sbjct: 212 PISASASSPAPAPGRSAADDAGASSSDSSSSES-SGCGWGPENECPLPRPAPITLPTRIW 270
Query: 1996 TTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSEST 2055
S S+ P S S++ SP ++ S + S+ + S S+
Sbjct: 271 EASGWNGPSSRP-GPASSSSSPRER--------SPSPSPSSPGSGPAPSSPRASSSSSSS 321
Query: 2056 TTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESEST 2115
++ +S S +S S + + S S + S P SSP + +P S +
Sbjct: 322 RESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRP-PPPADPSSPRKRPRPSRAPSSPAA 380
Query: 2116 TTSSPASEST 2125
+ P
Sbjct: 381 SAGRPTRRRA 390
|
Length = 1352 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 72.1 bits (176), Expect = 3e-12
Identities = 48/239 (20%), Positives = 90/239 (37%), Gaps = 8/239 (3%)
Query: 1870 IIFTTNNNSESTVVMSTLNSLLSENTTTNSPESEST--TTNNPESESTTTSSPESESTTT 1927
+I T + +++ + S T SP + + + S T+ + T +
Sbjct: 532 VIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGS 591
Query: 1928 SSLVSES----TTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESE 1983
S + ++ S+P S ST+T+ + + T T S P + +T SP
Sbjct: 592 SPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPG 651
Query: 1984 STTTSSLVSESTTTSSPESEST--TTISPVSESTTTSSPVSESTTTISPESESTTTSSPA 2041
TTS + +++S T P +T+ S+P + T + S +S
Sbjct: 652 PGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTT 711
Query: 2042 SESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSP 2100
E++ + S S TN A + ++ +TSS T +SP + + P
Sbjct: 712 KETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVP 770
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 7e-12
Identities = 55/282 (19%), Positives = 82/282 (29%), Gaps = 42/282 (14%)
Query: 1897 TNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTT--TSSPESES 1954
P T +T + S S S T P S T P S
Sbjct: 68 PTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPP 127
Query: 1955 TTTSSLVSE-------STTTSSPESESTTTSSPESESTTTSS--------LVSESTTTSS 1999
+ + +SE + + S S SS E+ S
Sbjct: 128 PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPS 187
Query: 2000 PESESTTTI--------------SPVSESTTTSSPVSESTTTISPESESTTTSSPAS--- 2042
SP+S S ++ +P + + S+ +SS S
Sbjct: 188 SPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGC 247
Query: 2043 -ESTTTNNPKSESTTTNNPAS--ESITSSSPASESTTTSSPASES-----TTTSSPASES 2094
P P E+ + P+S SS +S + SSP S
Sbjct: 248 GWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGP 307
Query: 2095 TTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHS 2136
+S AS S+++S S S+T+SS S G SP
Sbjct: 308 APSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSR 349
|
Length = 1352 |
| >gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (170), Expect = 1e-11
Identities = 44/229 (19%), Positives = 100/229 (43%), Gaps = 17/229 (7%)
Query: 1914 STTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESE 1973
T + E+TT + + T T ++ TT +P+ T + +V ++ TT + +S
Sbjct: 148 VAPTQEVKKETTTQQAAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNATTHAVKSG 207
Query: 1974 STTTSSPESESTTTSSLVSESTTTSSP--------ESESTTTISPVSESTTTSSPVSEST 2025
T + + ++S + +SS ++ T +P +E T + +
Sbjct: 208 DTIWALSVKYGVSVQDIMSWNNLSSSSIYVGQKLAIKQTANTATPKAEVKTEAPAAEKQA 267
Query: 2026 TTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSP-----ASESTTTSSP 2080
+ E+ +T T++ + TTT + T P + + +P A+++ T ++
Sbjct: 268 APVVKENTNTNTATTEKKETTTQ----QQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNT 323
Query: 2081 ASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEE 2129
+ +T TS+P+ + T ++ + + + ++ S+ +S +S S I E
Sbjct: 324 NTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSSASAIIAE 372
|
Length = 481 |
| >gnl|CDD|217837 pfam04003, Utp12, Dip2/Utp12 Family | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-11
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 1630 SSELEEVLLVLSLSQVTDLLTHLSSLL-DSSHHRCELVIRVAVFLVRIHHGPLTASKELL 1688
S++E LL L S V LL L+ L E ++R FL+RIH L ++ LL
Sbjct: 15 PSDIELTLLSLPFSYVLRLLEFLAERLQAERSPHLEFLLRWLKFLLRIHGKYLVSNPNLL 74
Query: 1689 PVLQRLEQLASRRVEEIR 1706
P L+ L+++ RRV+++R
Sbjct: 75 PQLRSLQKVLRRRVKDLR 92
|
This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2. Length = 109 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 9e-11
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDL 411
+ L GH + + PDG +AS D I +W + E + +SGHT +V L
Sbjct: 209 GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL-RTGECVQTLSGHTNSVTSL 267
Query: 412 KFSTDGCHIFTCSTDQTLAVWD 433
+S DG + + S D T+ +WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-10
Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 16/231 (6%)
Query: 1957 TSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTT 2016
+++LV + T+ + P+ +ST ++ + S+ T++
Sbjct: 12 STTLVLPTLTSPT-----AYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNN 66
Query: 2017 TSSPVSESTTTISPESESTTTSSPASE-------STTTNNPKSESTTTNNPASESITSSS 2069
+S + S ST+ S+ + T N +++ +N + ++ +
Sbjct: 67 NTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNL 126
Query: 2070 PASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEE 2129
S + ++ S+ S + SS +++ T SS + ++ +P+S +T
Sbjct: 127 FNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPST 186
Query: 2130 QGVSPHSEKLSANEDPEEFPNEDVFEHTFAEIPNIDHSN-QTDEAIPETFD 2179
P+S K + P D T + + + +D A+ D
Sbjct: 187 SNKQPNSPKPTQPNQSNSQPASD---DTANQKSSSKDNQSMSDSALDSILD 234
|
Length = 619 |
| >gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (160), Expect = 1e-10
Identities = 43/220 (19%), Positives = 96/220 (43%), Gaps = 17/220 (7%)
Query: 1893 ENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPES 1952
E TT + + T T ++ TT +P+ T + +V ++ TT + +S T +
Sbjct: 157 ETTTQQAAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNATTHAVKSGDTIWALSVK 216
Query: 1953 ESTTTSSLVSESTTTSSP--------ESESTTTSSPESESTTTSSLVSESTTTSSPESES 2004
+ ++S + +SS ++ T++P++E T + + E+ +
Sbjct: 217 YGVSVQDIMSWNNLSSSSIYVGQKLAIKQTANTATPKAEVKTEAPAAEKQAAPVVKENTN 276
Query: 2005 TTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASES 2064
T T + + TTT + T +P T + PA +T N +++ T N + +
Sbjct: 277 TNTATTEKKETTTQ----QQTAPKAP----TEAAKPAPAPSTNTN-ANKTNTNTNTNTNN 327
Query: 2065 ITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASES 2104
+S+P+ + T ++ + + + ++ S+ +S +S S
Sbjct: 328 TNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSSAS 367
|
Length = 481 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 64.4 bits (156), Expect = 7e-10
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 10/246 (4%)
Query: 1845 ITNNLLISMLAATAVAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESES 1904
+T T+V + +E + NN+ + VV S + L S TT S
Sbjct: 535 VTTTATSPPTGTTSVPNATSPQVTEE--SPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSS 592
Query: 1905 TTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSES 1964
T+ P S++ S+P S ST+T+ L++ + T T S P + +T S
Sbjct: 593 PTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGP 652
Query: 1965 TTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSES 2024
TTS +++S T P +T+ +P + T + S
Sbjct: 653 GTTSQVSGPGNSSTSRYPGEV--------HVTEGMPNPNATSPSAPSGQKTAVPTVTSTG 704
Query: 2025 TTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASES 2084
S E++ ++ AS S TN +T N ++SS T +SP +
Sbjct: 705 GKANSTTKETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTT 764
Query: 2085 TTTSSP 2090
+ P
Sbjct: 765 KQATVP 770
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 9e-10
Identities = 51/257 (19%), Positives = 104/257 (40%), Gaps = 22/257 (8%)
Query: 1894 NTTTN-SPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPES 1952
+T N P +S ++ +S ++T+S E + ++ + + S S S T +
Sbjct: 4 DTMNNLLPSIKSQLHHSKKSPPSSTTSQELMNGNSTP--NSFSPIPSKASSSATFTLNLP 61
Query: 1953 ESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVS 2012
+ + + ++ S++ S + + + + S ++ + SL+ E +++ +P +
Sbjct: 62 INNSVNHKITSSSS-SRRKPSGSWSVAISSSTSGSQSLLMEL---------PSSSFNPST 111
Query: 2013 ESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPAS 2072
S S+ ST + S T +SS AS +N + +N A+ + + SS +
Sbjct: 112 SSRNKSNSALSSTQQGNANSSVTLSSSTASSMFNSNKLPLPNPNHSNSATTNQSGSSFIN 171
Query: 2073 ESTTTSSPASESTTTSSPASESTTTS---------SPASESTTTSSPESESTTTSSPASE 2123
++SS + SS TS P+S+S T S+ S S S
Sbjct: 172 TPASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSDSATASADTSPSFNPPPNLSP 231
Query: 2124 STTIEEQGVSPHSEKLS 2140
+ +SP + S
Sbjct: 232 NNLFSTSDLSPLPDTQS 248
|
Length = 777 |
| >gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 1e-09
Identities = 49/232 (21%), Positives = 87/232 (37%), Gaps = 18/232 (7%)
Query: 1903 ESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPE-SESTTTSSPESESTTTSSLV 1961
+ N +++ + S ES S+ +SSP+ + ++ P + S + +S
Sbjct: 43 PISIRNGADNDIINSESKESFGKYALGHQIFSSFSSSPKLFQRRNSAGPITHSPSATSS- 101
Query: 1962 SESTTTSSPESESTTTSSPESES-----TTTSSLVSESTTTSSPESESTTTISPVSESTT 2016
TSS S SP S+S ++T S SP + + P S +
Sbjct: 102 -----TSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSGPGDGSPVQKRKNPLLPSSSTHG 156
Query: 2017 TSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTT 2076
T P+ + S S S + + + S S S TS+ + S
Sbjct: 157 THPPIVFTDNNGSHAGAPNARSRKEIPSLGSQSMQLPSPHFRQKFSSSDTSNGFSYPSIR 216
Query: 2077 TSSPASESTTTSSPASEST------TTSSPASESTTTSSPESESTTTSSPAS 2122
+S S ++ S P S + + SS AS ++ +P S ++ S +S
Sbjct: 217 KNSRHSSNSMPSFPHSSTAVLLKRHSGSSGASLISSNITPSSSNSEAMSTSS 268
|
Length = 1175 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-09
Identities = 46/241 (19%), Positives = 81/241 (33%), Gaps = 20/241 (8%)
Query: 1910 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSS 1969
P S S ++ +P + + S+ +SS ES S PE+E T +
Sbjct: 212 PISASASSPAPAPGRSAADDAGASSSDSSSSES-SGCGWGPENE---CPLPRPAPITLPT 267
Query: 1970 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTIS 2029
E++ + P S SS SS E SP ++ S + S+ S
Sbjct: 268 RIWEASGWNGPSSRPGPASS--------SSSPRER----SPSPSPSSPGSGPAPSSPRAS 315
Query: 2030 PESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSS 2089
S S+ SS +S S+++ + + + + S S + S P + +S S
Sbjct: 316 SSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRP---RPS 372
Query: 2090 PASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEFP 2149
A S S+ + + A+ SP ++ +P
Sbjct: 373 RAPSSPAASAGRPTRRRARAAVAGRARRRD-ATGRFPAGRPRPSPLDAGAASGAFYARYP 431
Query: 2150 N 2150
Sbjct: 432 L 432
|
Length = 1352 |
| >gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 2e-09
Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 18/228 (7%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSS-----LVSESTTTSSPESESTT 1946
++ + S ES + S+ +SSP+ S+ S +++TSS S
Sbjct: 52 NDIINSESKESFGKYALGHQIFSSFSSSPKLFQRRNSAGPITHSPSATSSTSSLNSNDGD 111
Query: 1947 TSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTT 2006
SP S+S + + S+T S +S S + + L+ S+T + T
Sbjct: 112 QFSPASDSLS----FNPSSTQSRKDSGPGDGSPVQKRK---NPLLPSSSTHGTHPPIVFT 164
Query: 2007 --TISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASES 2064
S S S + S + S S S T+N S N+ S +
Sbjct: 165 DNNGSHAGAPNARSRKEIPSLGSQSMQLPSPHFRQKFSSSDTSNGFSYPSIRKNSRHSSN 224
Query: 2065 ITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPES 2112
S P S +++ + + SS AS ++ +P+S ++ S S
Sbjct: 225 SMPSFPHS----STAVLLKRHSGSSGASLISSNITPSSSNSEAMSTSS 268
|
Length = 1175 |
| >gnl|CDD|118131 pfam09595, Metaviral_G, Metaviral_G glycoprotein | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 3e-09
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 8/154 (5%)
Query: 1977 TSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTT 2036
TSSP +ES+ + ++P S+ T S S + ++ S T + ++T
Sbjct: 32 TSSPPTESSKKTPTTPTDNPDTNPNSQHPTQQSTESSTLPAATSESHLETEPTSTPDTTN 91
Query: 2037 TSSPASESTT----TNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPAS 2092
TT + +++ + + +P + ++T + + +T TSS
Sbjct: 92 RQQTVDRHTTPPSSSRTQTTQAVHEKKNTRTTSRTQTPPT-TSTAAVQTTTTTNTSSTGK 150
Query: 2093 ESTTTSS-PASESTTTSSPESESTTTSSPASEST 2125
E TTTS P S +TT S E++ + +S ST
Sbjct: 151 EPTTTSVQPRSSATTQSH--EETSQANPQSSAST 182
|
This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated. Length = 183 |
| >gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-09
Identities = 64/317 (20%), Positives = 115/317 (36%), Gaps = 53/317 (16%)
Query: 1873 TTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVS 1932
++ ++ S S L L +++ +S E ++T + + S E +SS
Sbjct: 342 SSKTSTNSQSGTSMLEDDLKLSSSEDSDEEQATEKPPSRNTPPSAPSSNPEPAASSS--- 398
Query: 1933 ESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTS-------------- 1978
+++SS SES++ S ESES+++ S +E T+SPE E +T+
Sbjct: 399 -GSSSSSSGSESSSGSDSESESSSSDSEENEPPRTASPEPEPPSTNKWQLDNWLNKVNPH 457
Query: 1979 --SPES------------ESTTTSSLVSESTTTSSPESESTTTISPVSESTTT------- 2017
SP E S E ++ T
Sbjct: 458 KVSPAESVSSNPPIKQPMEKEGKVKSSGSQYHPESKEPPPKSSSKEKRRPRTAQKGPESG 517
Query: 2018 -----SSPVSESTT---TISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSS 2069
S SE+ T+ + + A + T P+SE T +S
Sbjct: 518 RGKQKSPAQSEAPPQRRTVGKKQPKKPEKASAGDERTGLRPESEPGTLPYGSSVQTPPDR 577
Query: 2070 PASESTTTSSPA--SESTTTSSPASESTTTSSPA-SESTTTSSPESESTTTSSPASES-- 2124
P + + + P+ E ++ PA+E SP+ + E++S+++ SP ES
Sbjct: 578 PKAATKGSRKPSPRKEPKSSVPPAAEKRKYKSPSKIVPKSREFIETDSSSSDSPEDESLP 637
Query: 2125 TTIEEQGVSPHSEKLSA 2141
+ + G + S K S
Sbjct: 638 PSSQSPG-NTESSKESC 653
|
This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154 |
| >gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (143), Expect = 3e-09
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 1967 TSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTT 2026
TS + S ++++ T T+++ + S + S P + +TT++ S TT++ +S +TT
Sbjct: 20 TSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTT 79
Query: 2027 TISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASEST-TTSSPASEST 2085
T+ T+T + + TT+N + + TT A + + ST TS+ + S+
Sbjct: 80 TV------TSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSS 133
Query: 2086 TTSSPASEST--TTSSPASESTTTSSPESESTTTSSPASE 2123
+T+S + T TT +P S TS+ + + E
Sbjct: 134 STTSATTRITNATTLAPTLSSKGTSNATKTTAELPTVPDE 173
|
Length = 234 |
| >gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
Score = 61.8 bits (149), Expect = 4e-09
Identities = 57/316 (18%), Positives = 97/316 (30%), Gaps = 31/316 (9%)
Query: 1880 STVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSS 1939
S + T + + + E+ E E T + E++ T+ E
Sbjct: 260 SPTLEVTAPKEVEQPLQPEPVDEETVAETKAEEEPQPTQTVETKPTSAPESTVEENL--- 316
Query: 1940 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSS 1999
PE T + + S T S+ E T P+ E T V E T +
Sbjct: 317 PEINQ-PTQAVQPTSETISTTPVEPTDQLKPKEVDQIQ---EELKKTKEIEVEELPTKKN 372
Query: 2000 PESESTTTISPVSESTTTSSPVSESTTTISPES--ESTTTSSPASESTTTN-------NP 2050
E + + ++ PE E+ T E T +N +P
Sbjct: 373 DLVEIN-----FDDLEELKFELVQTNQEKEPEKAVENWATDYQLDEPTQSNIDWYKQEDP 427
Query: 2051 KSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASE---STTT 2107
K + A+ IT + S P+ EST E+ E +
Sbjct: 428 KDLEQLVQDQATLEITEENQISPEPVEEQPSVESTAPEDQVVEAIKEEEELLEQKKAAEF 487
Query: 2108 SSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEFPNEDVFE-----HTFAEI- 2161
+ + T T+S + Q + N D ++ ++ F I
Sbjct: 488 AELFGQPTPTTSIEELLNPEQTQPTEFDEIIIENNLDNVSVADDQNYQLKDDNKKFINIS 547
Query: 2162 -PNIDHSNQTDEAIPE 2176
P I SN++D+ I +
Sbjct: 548 LPTIVSSNESDDLIYD 563
|
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871 |
| >gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-09
Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 6/225 (2%)
Query: 1924 STTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESE 1983
S T ++L+ + +S +S+ E +S + + S S S T +
Sbjct: 3 SDTMNNLLPSIKSQLHHSKKSPPSSTTSQELMNGNSTPNSFSPIPSKASSSATFTLNLPI 62
Query: 1984 STTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVS---ESTTTISPESESTTTSSP 2040
+ + + ++ S SS + + + S S+T+ S +++ +P + S S+
Sbjct: 63 NNSVNHKITSS---SSSRRKPSGSWSVAISSSTSGSQSLLMELPSSSFNPSTSSRNKSNS 119
Query: 2041 ASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSP 2100
A ST N S T +++ AS S+ + S+ A+ + + SS + ++SS
Sbjct: 120 ALSSTQQGNANSSVTLSSSTASSMFNSNKLPLPNPNHSNSATTNQSGSSFINTPASSSSQ 179
Query: 2101 ASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDP 2145
+ SS + TS + I+ S + ++
Sbjct: 180 PLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSDSATASADTSPSFN 224
|
Length = 777 |
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 8e-09
Identities = 42/214 (19%), Positives = 76/214 (35%), Gaps = 19/214 (8%)
Query: 1933 ESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVS 1992
E+ T S + E + SS ++T + +++ + S+S+ + +PE E +
Sbjct: 205 ENHTLSVTDKEKSEASSK-GLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHH 263
Query: 1993 ESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKS 2052
S + + S TI + S P+S ST + +
Sbjct: 264 HSHNHQHHS---------IGINNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETT 314
Query: 2053 ESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPES 2112
++++ S SS A S S SSP S S+ S S++ S ES
Sbjct: 315 SNSSSAAAGSIGSKSSKSAKHSNRNKSN-------SSPKSHSSANGS--VPSSSVSDNES 365
Query: 2113 ESTTTSSPASESTTIEEQGVSPHSEKLSANEDPE 2146
+ S +S + ++ + N PE
Sbjct: 366 KQKRASKSSSGARDSKKDASGMSANGTVENCIPE 399
|
This entry is a highly conserved protein present in eukaryotes. Length = 680 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 9e-09
Identities = 38/207 (18%), Positives = 76/207 (36%), Gaps = 2/207 (0%)
Query: 1910 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSS 1969
P + + T S + +T+ ++ + + S+ T S
Sbjct: 139 PICQRDYNPRDRPKCRCTLRGKDVSCCKEPKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQ 198
Query: 1970 PESESTTTSSPESESTTTSSLVSESTTTSS-PESESTTTISPVSESTTTSSPVSESTTTI 2028
P ++ T++ ++T + ++ TTTSS PE ++ S S + P S ++
Sbjct: 199 PATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQ 258
Query: 2029 SPESESTTTSSPASESTTTNNPKS-ESTTTNNPASESITSSSPASESTTTSSPASESTTT 2087
S + + T+N +S ST T P ++ + P T T+ S +
Sbjct: 259 STTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHS 318
Query: 2088 SSPASESTTTSSPASESTTTSSPESES 2114
S P ++ T+ + P+ S
Sbjct: 319 SPPGVQANPTTQNLVDCKELDPPKPNS 345
|
Length = 408 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 23 NCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLS 82
V V + L++ + + +WDL L G ++ V ++
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS----------TGKCLGTLRGHENGVNSVA 226
Query: 83 PNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIV 142
+ D LA +G+++ + L T + + T +GH +++T + + P G RLA+GS D I
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286
Query: 143 LWD 145
+WD
Sbjct: 287 IWD 289
|
Length = 289 |
| >gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-08
Identities = 54/262 (20%), Positives = 94/262 (35%), Gaps = 25/262 (9%)
Query: 1896 TTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESEST 1955
T +S T N + + ++ +S S+S T S++ + SS E ++ + S
Sbjct: 323 TKDSQHVSPGTQNQKQYDPSSKTSTNSQSGT--SMLEDDLKLSSSEDSDEEQATEKPPSR 380
Query: 1956 TTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSEST 2015
T S + S +++SS SES++ S SES+++ S E+E T SP E
Sbjct: 381 NTPPSAPSSNPEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPRTASPEPEPP 440
Query: 2016 TT---------------SSPVSESTTTISP-----ESESTTTSSPASESTTTNNPKSEST 2055
+T +ES ++ P E E SS + + P +S+
Sbjct: 441 STNKWQLDNWLNKVNPHKVSPAESVSSNPPIKQPMEKEGKVKSSGSQYHPESKEPPPKSS 500
Query: 2056 TTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSS---PASESTTTSSPES 2112
+ + + S SE+ + A + T PES
Sbjct: 501 SKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQRRTVGKKQPKKPEKASAGDERTGLRPES 560
Query: 2113 ESTTTSSPASESTTIEEQGVSP 2134
E T +S T + +
Sbjct: 561 EPGTLPYGSSVQTPPDRPKAAT 582
|
This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154 |
| >gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
Score = 59.8 bits (144), Expect = 2e-08
Identities = 51/316 (16%), Positives = 92/316 (29%), Gaps = 26/316 (8%)
Query: 1893 ENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPES 1952
+ + E S+ T + L E + E+ + E
Sbjct: 238 RELEPQDDSEDDYVIPDAEIISSPTLEVTAPKEVEQPLQPEPV-----DEETVAETKAEE 292
Query: 1953 ESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVS 2012
E T ++ E+ TS+PES + + PE T + + T +++P E T + P
Sbjct: 293 EPQPTQTV--ETKPTSAPES-TVEENLPEINQPTQAVQPTSETISTTPV-EPTDQLKP-K 347
Query: 2013 ESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNP----ASESITSS 2068
E + ++ E + K E TN + ++
Sbjct: 348 EVDQIQEELKKTKEIEVEELPTKKNDLVEINFDDLEELKFELVQTNQEKEPEKAVENWAT 407
Query: 2069 SPASESTTTSS--------PASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSP 2120
+ T S+ P A+ T + S P EST
Sbjct: 408 DYQLDEPTQSNIDWYKQEDPKDLEQLVQDQATLEITEENQISPEPVEEQPSVESTAPEDQ 467
Query: 2121 ASESTTIEEQGVSPHSEKLSANEDPEEFPN---EDVFEHTFAEIPNIDHSNQTDEAIPET 2177
E+ EE+ + A + P E++ + P + +
Sbjct: 468 VVEAIKEEEELLEQKKAAEFAELFGQPTPTTSIEELLNPEQTQ-PTEFDEIIIENNLDNV 526
Query: 2178 FDAREEWPQCKDVIGK 2193
A ++ Q KD K
Sbjct: 527 SVADDQNYQLKDDNKK 542
|
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 2e-08
Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 10/187 (5%)
Query: 1909 NPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTS 1968
+ +T+ ++ + + S+ T S P ++ T++ ++T + ++ TTTS
Sbjct: 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTS 227
Query: 1969 S-PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTT 2027
S PE ++ S S + +T+S + STT + P + + +
Sbjct: 228 SNPEPQTEPPPSQRGPSGSP----QHPPSTTSQDQ-STTGDGQEHTQRRKTPPATSNRRS 282
Query: 2028 ISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTT 2087
ST T P ++ T P T T S SS P ++ T+ +
Sbjct: 283 P----HSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNLVDCKEL 338
Query: 2088 SSPASES 2094
P S
Sbjct: 339 DPPKPNS 345
|
Length = 408 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-08
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 4/174 (2%)
Query: 1896 TTNSPESESTTTNNP--ESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSS-PES 1952
TT+ S T ++P S+ T S P ++ T++ ++T ++ TTTSS PE
Sbjct: 173 TTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEP 232
Query: 1953 ESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPES-ESTTTISPV 2011
++ S S + P S ++ S + + TS+ S ST T P
Sbjct: 233 QTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPT 292
Query: 2012 SESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESI 2065
++ T P T T S +S P ++ T + + P SI
Sbjct: 293 TKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNLVDCKELDPPKPNSI 346
|
Length = 408 |
| >gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein) | Back alignment and domain information |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 39/201 (19%), Positives = 85/201 (42%), Gaps = 17/201 (8%)
Query: 1938 SSPESESTTTSSPESESTTTSSLVSEST-TTSSPESESTTTSSPESESTTTSSLVSESTT 1996
++ E E T + E+++ ++ V E+ +++ T + E E ++ E
Sbjct: 28 AATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEEAP 87
Query: 1997 TSSPESE---STTTISPVSESTTTSSPVSESTTTISPE----SESTTTSSPASESTTTNN 2049
+ PE + P S P + E SE+++ + ++
Sbjct: 88 KAEPEKTEGAAEAKAEPPKASDPEQEPAAAPGPAAGGEAPKASEASSQPAESAAPAKEEE 147
Query: 2050 PKSE---STTTNNPAS---ESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASE 2103
E + T PA+ E+ + ++PAS+S +SS A+ S+ + A+E+ S ++
Sbjct: 148 KSKEEGEAKKTEAPAAAAQETKSDAAPASDSKPSSSEAAPSSKETPAATEA---PSSTAK 204
Query: 2104 STTTSSPESESTTTSSPASES 2124
++ ++P E + +PA+ S
Sbjct: 205 ASAPAAPAEEVKPSEAPAANS 225
|
This family consists of several brain acid soluble protein 1 (BASP1) or neuronal axonal membrane protein NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent calmodulin-binding protein of unknown function. Length = 233 |
| >gnl|CDD|118131 pfam09595, Metaviral_G, Metaviral_G glycoprotein | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 3e-08
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
Query: 1895 TTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESES 1954
T+ S S+ ++ TT + ++ S ++ +T SS +T+ S E+E
Sbjct: 24 NTSESEHHTSSPPTESSKKTPTTPTDNPDTNPNSQHPTQQSTESSTLPAATSESHLETEP 83
Query: 1955 TTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSES 2014
T+T TT+ ++ T+ P S T T+ V E T + T +
Sbjct: 84 TSTPD------TTNRQQTVDRHTTPPSSSRTQTTQAVHEKKNTRTTSRTQTP-----PTT 132
Query: 2015 TTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASES 2064
+T + + +T T S E TTTS S TT + E++ N +S S
Sbjct: 133 STAAVQTTTTTNTSSTGKEPTTTSVQPRSSATTQS-HEETSQANPQSSAS 181
|
This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated. Length = 183 |
| >gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (135), Expect = 3e-08
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 1914 STTTSSPESESTTTSS--LVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPE 1971
+++ SS S T + + + S + S P + +TT + S TT++++S +TTT +
Sbjct: 25 TSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTST 84
Query: 1972 SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPE 2031
+ T S ++T + + + T T + V+ + TT S STT+ +
Sbjct: 85 GTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTR---SSSTTSATTR 141
Query: 2032 SESTTTSSPASESTTTNNPKSESTTTNNPASESITSSS 2069
+ TT +P S T+N + E S S
Sbjct: 142 ITNATTLAPTLSSKGTSNATKTTAELPTVPDERQPSLS 179
|
Length = 234 |
| >gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-08
Identities = 53/343 (15%), Positives = 113/343 (32%), Gaps = 49/343 (14%)
Query: 1887 LNSLLSENTTTN----SPESESTTTNNPESESTTTS--SPESESTTTSSLVSEST----- 1935
+ L+E TT + +E+ + +E T + + ES ++L +E
Sbjct: 407 KKTALTEQTTAQQQVQAANAEAVAEADASAEPADTVEQALDDESELLAALNAEQAVILSQ 466
Query: 1936 ---------------TTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSP 1980
++ PE +T + T + V +++ +++ +++T +
Sbjct: 467 AQSQGFEASSSLDADNSAVPEQIDSTAEQSVVNPSVTDTQVDDTSASNNSAADNTVDDNY 526
Query: 1981 ESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSP 2040
+E T S+ + E V+ S+ + + +S+ + + + +
Sbjct: 527 SAEDTLESNGLDEGDYAQDSAPLDAYQDDYVAFSSESYNALSDDEQHSANVQSAQSAAEA 586
Query: 2041 ASESTTTNNPKSESTTTNNPASESITS---------------SSPASESTTTSSPASEST 2085
S + + + +T + A + I SP SS +
Sbjct: 587 QPSSQSLSPISAVTTAAASLADDDILDAVLAARDSLLSDLDALSPKEGDGKKSSADRKPK 646
Query: 2086 TTSS---PASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSAN 2142
T S PAS S SSP + T+ S ++ S G +P +
Sbjct: 647 TPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDP 706
Query: 2143 ED--PEEFPNEDVFEHTFAEIPNIDHSNQTDEAIPETFDAREE 2183
D P E E + PN E++ + ++ +
Sbjct: 707 YDRPPWEEAPEVASA---NDGPNNAAEGNLSESVEDASNSELQ 746
|
Length = 944 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 3e-08
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 12/189 (6%)
Query: 346 GRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSV-YGECENIGVMSG 403
G T N+ PI+ L+GH ++ +HP +AS+G D + +W V G+ V+
Sbjct: 109 GLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE--VIKC 166
Query: 404 HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGH-STFVNSCDPVRRGQLL 462
H+ + L+++ DG + T S D+ L + D G + ++ H S C +R L+
Sbjct: 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226
Query: 463 IASG---SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAF----NDTAECVLTGGIDNDIKM 515
I G S + +WD RK S + Q +++ DT + + +I+
Sbjct: 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRC 286
Query: 516 WDLRTNSVV 524
++L +
Sbjct: 287 FELMNERLT 295
|
Length = 493 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 3e-08
Identities = 51/256 (19%), Positives = 99/256 (38%), Gaps = 20/256 (7%)
Query: 1884 MSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESE 1943
MSTL S T SP+ ++ TN + S+ +SP + ST+++ +EST + + +
Sbjct: 14 MSTLRS--GRKKQTASPDGRASPTNE-DQRSSGRNSPSAASTSSNDSKAESTKKPNKKIK 70
Query: 1944 STTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESE 2003
TS +S + E + + E E T +++ + + SE E E
Sbjct: 71 EEATSPLKS-----TKRQREKPASDTEEPERVTAKKSKTQELSRPNSPSEGEGEGEGEGE 125
Query: 2004 STTTISPVSESTTTSSPVSESTTTISPESESTTTSSPA---SESTTTNNPKSESTTTNNP 2060
S S+S + + S I ++ S++ S P+ +ES + ++ + + P
Sbjct: 126 S-------SDSRSVNEEGSSDPKDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGP 178
Query: 2061 ASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTT--SSPESESTTTS 2118
S + + + S +P++++ + P S + S+P
Sbjct: 179 PSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLP 238
Query: 2119 SPASESTTIEEQGVSP 2134
SP SP
Sbjct: 239 SPHPPLQPQTASQQSP 254
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-08
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 1895 TTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESES 1954
+ P E+ + T TS S + T P+S + T ++ +
Sbjct: 732 SLEVFPAGENWGFIPTTKRVKVRIMDPASGTGTSITTSGTFTAEVPQSPTKTETTLSYSA 791
Query: 1955 TTTSSLVSESTTTSSPESE---STTTSSPESESTTTSSLVSESTTTSSPESESTT 2006
+ +S++ E+T+ ++ TTTSSP TT+ + S STTT++ S++TT
Sbjct: 792 YSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTT 846
|
Length = 872 |
| >gnl|CDD|118131 pfam09595, Metaviral_G, Metaviral_G glycoprotein | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 5e-08
Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 15/188 (7%)
Query: 1858 AVAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTT 1917
A+ I +I NY+ + SE S S+ T T ++ T NP S+ T
Sbjct: 10 ALNIYLIINYA--TQKNTSESEHHTSSPPTES--SKKTPTTPTDNPDT---NPNSQHPTQ 62
Query: 1918 SSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTT 1977
S ES + ++ S T + ++T TT S TT + E ++T T
Sbjct: 63 QSTESSTLPAATSESHLETEPTSTPDTTNRQQTVDRHTTPPSSSRTQTTQAVHEKKNTRT 122
Query: 1978 SSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTT 2037
+S TTS+ ++TTT T T S E TTTS S TT S E E++
Sbjct: 123 TSRTQTPPTTSTAAVQTTTT-------TNTSSTGKEPTTTSVQPRSSATTQSHE-ETSQA 174
Query: 2038 SSPASEST 2045
+ +S ST
Sbjct: 175 NPQSSAST 182
|
This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated. Length = 183 |
| >gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210) | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 6e-08
Identities = 50/254 (19%), Positives = 83/254 (32%), Gaps = 21/254 (8%)
Query: 1885 STLNSLLSENTTTNSPESESTTTNNPESESTTTS--------------SPESESTTTSSL 1930
S L+S ++++ +SP ES E S SP E +
Sbjct: 284 SRLSSPAPDSSSFSSPSGESGLEEREAEEPILASDEVAKEPAGESPAVSPSFEREKSEKS 343
Query: 1931 VSESTTTSSPESESTTTSSPESESTTTSSLVS-ESTTTSSPESESTTTSSPESESTTTSS 1989
ES S S+ + + + L E PE ES P +E ++
Sbjct: 344 RHESDPKSRENSKPASIYGSVPDLIRHTPLEDVEEYEPLFPEDESEIAVKPPTEESSRRP 403
Query: 1990 LVSESTTTSSPESESTTTISPVSESTTTSSP-VSESTTTISPESESTTTSSPASESTTTN 2048
+ S E + S + ++ T S+P + +PE E++ +SS S +
Sbjct: 404 EEEKHRFPSEDVWEDSP--SSLQDTATVSTPSNPPPRASETPEQETSRSSSEVSLDPHQS 461
Query: 2049 NPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTS 2108
KSE S+ S E S TT E ++S ++ S
Sbjct: 462 ELKSEKKKARPEVSKQRFPSRDVWEDAPESQELV---TTEETPEEVKSSSPGVTKPAIPS 518
Query: 2109 SPESESTTTSSPAS 2122
P+ T+
Sbjct: 519 RPKKGKPTSEKRKP 532
|
This is a family of proteins conserved in yeasts. The function is not known. The Schizosaccharomyces pombe member is SPBC18E5.07 and the Saccharomyces cerevisiae member is AIM21. Length = 671 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-08
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559
+ +++ L+GH+ VT ++ SPDG Y+ S + D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 7e-08
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 522 SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559
+++ L+GH+ VT ++ SPDG+ + S + D TVR+WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 8e-08
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 1951 ESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISP 2010
+ T TS S + T P+S + T ++ + + +S++ E+T+ ++ + T
Sbjct: 758 PASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQT---- 813
Query: 2011 VSESTTTSSP-VSESTTTISPESESTTTSSPASESTT 2046
TTTSSP +++T+ + +TTT+SP S++TT
Sbjct: 814 ---QTTTSSPSPTQTTSPTQTSTSTTTTTSP-SQTTT 846
|
Length = 872 |
| >gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 9e-08
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
Query: 1986 TTSSLVSESTTTSSPESESTTTIS----PVSESTTTSSPVSESTTTISPESESTTTSSPA 2041
TT S +++ T T S P E+ I + T TS
Sbjct: 709 TTLSSEAKNPDTVKIGQALTVYGSLEVFPAGENWGFIPTTKRVKVRIMDPASGTGTSITT 768
Query: 2042 SESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPA 2101
S + T P+S + T + + +++S E+T+ + + T TTTSSP+
Sbjct: 769 SGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQT-------QTTTSSPS 821
Query: 2102 SESTTTSSPESESTTTSSPASESTTI 2127
TT+ + S STTT++ S++TT
Sbjct: 822 PTQTTSPTQTSTSTTTTTSPSQTTTG 847
|
Length = 872 |
| >gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-07
Identities = 50/320 (15%), Positives = 99/320 (30%), Gaps = 17/320 (5%)
Query: 1829 YCDFDSSMNLLSVSPYITNNLLISMLAATAVAISVIDNYSEIIFTTNNNSESTVVMSTLN 1888
F + S S T NL I+ + S + S ST + +
Sbjct: 40 PNSFSPIPSKASSSATFTLNLPINNSVNHKITSSSSSRRKPSGSWSVAISSSTS--GSQS 97
Query: 1889 SLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTS 1948
L+ +++ +P + S +N S+T + S T SS + S S+
Sbjct: 98 LLMELPSSSFNPSTSSRNKSNSA-LSSTQQGNANSSVTLSSSTASSMFNSNKLP------ 150
Query: 1949 SPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTI 2008
+ S+ + + + SS + ++SS + SS+ TS + I
Sbjct: 151 ---LPNPNHSNSATTNQSGSSFINTPASSSSQPLTNLVVSSIKRFPYLTSLSPFFN-YLI 206
Query: 2009 SPVSESTTTSSPVSESTTTISPESESTTTSSPASEST---TTNNPKSESTTTNNPASESI 2065
P S+S T S+ S + P S + S T + + +++ +E
Sbjct: 207 DPSSDSATASADTS-PSFNPPPNLSPNNLFSTSDLSPLPDTQSVENNIILNSSSSINELT 265
Query: 2066 TSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASEST 2125
+ S + + +S S S+ + + + S + S
Sbjct: 266 SIYGSVPSIRNLRGLNSALVSFLNVSSSSLAFSALNGKEVSPTGSPSTRSFARVLPKSSP 325
Query: 2126 TIEEQGVSPHSEKLSANEDP 2145
+ +
Sbjct: 326 NNLLTEILTTGVNPPQSLPS 345
|
Length = 777 |
| >gnl|CDD|118131 pfam09595, Metaviral_G, Metaviral_G glycoprotein | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 12/171 (7%)
Query: 1925 TTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESES 1984
T+ S S+ + ++ TT + ++ S ++ +T SS +T+ S E+E
Sbjct: 24 NTSESEHHTSSPPTESSKKTPTTPTDNPDTNPNSQHPTQQSTESSTLPAATSESHLETEP 83
Query: 1985 TTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASES 2044
T+T TT+ ++ T P S T T+ V E T ++ T +P + S
Sbjct: 84 TSTPD------TTNRQQTVDRHTTPPSSSRTQTTQAVHEKKNT----RTTSRTQTPPTTS 133
Query: 2045 TTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASEST 2095
T + + T++ + TS P S +TT S E++ + +S ST
Sbjct: 134 TAAVQTTTTTNTSSTGKEPTTTSVQPRSSATTQSH--EETSQANPQSSAST 182
|
This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated. Length = 183 |
| >gnl|CDD|217503 pfam03344, Daxx, Daxx Family | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-07
Identities = 58/272 (21%), Positives = 76/272 (27%), Gaps = 26/272 (9%)
Query: 1899 SPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTS 1958
S E ES E E ESE E + SE S E +
Sbjct: 439 SEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEE 498
Query: 1959 SLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTT-- 2016
S S E + SS+ ES + ES S ES
Sbjct: 499 PEEDAERRNSEMAGISRM---SEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESDEEL 555
Query: 2017 -TSSPVSESTTTISPESESTTTS-------SPASESTTTNNPKSESTTTN---NPASESI 2065
S T + + T P ST+ N + T+T N + +
Sbjct: 556 LAEESPLSSHTELEGVATPVETKISSSRKLPPPPVSTSLENDSATVTSTTRNGNVSPHTP 615
Query: 2066 TSSSPASESTTTSSPASESTTTSS----PASESTTTSSPASESTTTSSP--ESESTTTSS 2119
P S ES + + S PA TS ST +
Sbjct: 616 QDEQPPSGRKRKRKEEVESEPLGNQYLRHHNGSEKDGLPAPMDPVTSCSPVADSSTRVDT 675
Query: 2120 PASESTTIEEQ--GVSPHSEKLSANE--DPEE 2147
P+ E T Q G P K++ DPEE
Sbjct: 676 PSHELVTSSPQTPGDPPKKNKVNVATQCDPEE 707
|
The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715 |
| >gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-07
Identities = 43/249 (17%), Positives = 87/249 (34%), Gaps = 13/249 (5%)
Query: 1911 ESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSP 1970
+S++ + ++ + + +++ + S ES S+ +SSP
Sbjct: 22 KSDAFVSKQLLPPRRL-QRKLNPISIRNGADNDIINSESKESFGKYALGHQIFSSFSSSP 80
Query: 1971 E-SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSES-----TTTSSPVSES 2024
+ + ++ P + S + +S TSS S SP S+S ++T S
Sbjct: 81 KLFQRRNSAGPITHSPSATSS------TSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSG 134
Query: 2025 TTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASES 2084
SP + P+S + T+ P + + A S S + S S
Sbjct: 135 PGDGSPVQKRKNPLLPSSSTHGTHPPIVFTDNNGSHAGAPNARSRKEIPSLGSQSMQLPS 194
Query: 2085 TTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANED 2144
S S T++ + S +S S ++ S P S + + ++ L ++
Sbjct: 195 PHFRQKFSSSDTSNGFSYPSIRKNSRHSSNSMPSFPHSSTAVLLKRHSGSSGASLISSNI 254
Query: 2145 PEEFPNEDV 2153
N +
Sbjct: 255 TPSSSNSEA 263
|
Length = 1175 |
| >gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 1937 TSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTT 1996
TS + S ++++ T T+++ + S + S P + +TT + S TT++++S +TT
Sbjct: 20 TSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTT 79
Query: 1997 TSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASEST-TTNNPKSEST 2055
T + + TT++PV TTS+ + + TT T T + ST T+N + S+
Sbjct: 80 TVT---STGTTVTPVP---TTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSS 133
Query: 2056 TTNNPASESITSSSPASESTTTSSPASESTTTSSP 2090
+T + + +++ A ++ + + TT P
Sbjct: 134 STTSATTRITNATTLAPTLSSKGTSNATKTTAELP 168
|
Length = 234 |
| >gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-07
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 1933 ESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVS 1992
T TS S + T P+S + T ++L + + +S E+T+ ++ + T
Sbjct: 760 SGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQT------ 813
Query: 1993 ESTTTSSPESESTTTISPVSESTTTSSPVSESTT 2026
TTTSSP TT+ + S STTT++ S++TT
Sbjct: 814 -QTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTT 846
|
Length = 872 |
| >gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-07
Identities = 42/236 (17%), Positives = 92/236 (38%), Gaps = 14/236 (5%)
Query: 1940 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSS 1999
P++ P S ++ + S + +++ +S + +++ S ++ + + +++
Sbjct: 373 PDARGAWAGGPHSNASYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGYNNAPNSNT 432
Query: 2000 PESESTTTISPVSESTTTSSPVSE---STTTISPESESTTTSSPASESTTTNNPKSESTT 2056
P + + +P S ++ P S S T S S S A + + + +
Sbjct: 433 PYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHSAYHAAYQHRA 492
Query: 2057 TNNPASESITSSSPASE-------STTTSSPASESTTTSSPASESTTTSSPASESTTTSS 2109
N PA+ T++ PA+ ++ + AS ++ + TT+ P +
Sbjct: 493 ANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGSAPYGGNAATTADPNGIAKREDH 552
Query: 2110 PESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEFPNEDVFEHTFAEIPNID 2165
PE + S+ ++E S SE S NE+ E+++ I ID
Sbjct: 553 PEGGTNRQKYEQSDEESVE----SSSSENSSENENEVTDKGEEIYSLLKKTINRID 604
|
Length = 1560 |
| >gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle | Back alignment and domain information |
|---|
Score = 55.7 bits (133), Expect = 2e-07
Identities = 46/244 (18%), Positives = 87/244 (35%), Gaps = 9/244 (3%)
Query: 1893 ENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLV-SESTTTSSPESESTTTSSPE 1951
E +S E + P + + TTS +++ +S V ST T P + P+
Sbjct: 87 EEEAKSSEEESDSEGETPTAATLTTSPAQAKPLGKNSQVRPASTVTPGPSGKGANLPCPQ 146
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPV 2011
+ + + + SS E ES + +S + ++ S P PV
Sbjct: 147 KAGSAAVQVGKQEDSESSSEEESDSDGPGAPAQAKSSGKLLQARPASGPAKGPPQKAGPV 206
Query: 2012 SESTTTSSPV--SESTTTIS-PESESTTTSSPASESTTTNNPKSEST----TTNNPASES 2064
+ SES+ S E E+ + A P+++++ T P S
Sbjct: 207 ATQVKAERGKEDSESSEESSDSEEEAPAAMTAAQAKPALKTPQTKASPRKGTPITPTSAK 266
Query: 2065 ITSSSPASESTTTSSPASESTTTSSPA-SESTTTSSPASESTTTSSPESESTTTSSPASE 2123
+ + + + + SSPA + T S S+ S E E T ++ +
Sbjct: 267 VPPVRVGTPAPRKAGAVTSPACASSPALARGTQRPDEDSSSSEESESEEEGTAPATARGQ 326
Query: 2124 STTI 2127
+ ++
Sbjct: 327 AKSV 330
|
Length = 519 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 3e-07
Identities = 52/295 (17%), Positives = 101/295 (34%), Gaps = 29/295 (9%)
Query: 1851 ISMLAATAVAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNP 1910
++ A++IS+ + + T T S N TTT++ +TTT +
Sbjct: 39 LTGTTTIALSISISVEQAVLSDCTTYLRNGTTSGSLSNP---TRTTTST----ATTTRDI 91
Query: 1911 ESESTTTSSPESESTTTSSLV-----SESTTT--------------SSPESESTTTSSPE 1951
TT + + ES + + S S P +
Sbjct: 92 RGLQTTRTR-KLESCSNVQIAYGDMHDRSNPVLGGIDCLGLLALCESGPICQRDYNPRDR 150
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPV 2011
+ T S + +T+ ++ + + S+ T S P ++ T +
Sbjct: 151 PKCRCTLRGKDVSCCKEPKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATAN 210
Query: 2012 SESTTTSSPVSESTTT-ISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSP 2070
++T ++ TTT +PE ++ S S + +P S ++ + + +
Sbjct: 211 QRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQR 270
Query: 2071 ASESTTTSSPAS-ESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASES 2124
TS+ S ST T P ++ T P T T+ S +S P ++
Sbjct: 271 RKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQA 325
|
Length = 408 |
| >gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein) | Back alignment and domain information |
|---|
Score = 53.3 bits (127), Expect = 3e-07
Identities = 37/201 (18%), Positives = 83/201 (41%), Gaps = 3/201 (1%)
Query: 1909 NPESESTTTSSPESESTTTSSLVSEST-TTSSPESESTTTSSPESESTTTSSLVSESTTT 1967
E E T + E+++ ++ V E+ +++ T + E E ++ E
Sbjct: 29 ATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEEAPK 88
Query: 1968 SSPE-SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTT 2026
+ PE +E + E + + + E+ S+ +++P E
Sbjct: 89 AEPEKTEGAAEAKAEPPKASDPEQEPAAAPGPAAGGEAPKASEASSQPAESAAPAKEEEK 148
Query: 2027 TISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTT 2086
+ E E+ T +PA+ + T + + ++ + +SE+ SS +T S ++++
Sbjct: 149 S-KEEGEAKKTEAPAAAAQETKSDAAPASDSKPSSSEAAPSSKETPAATEAPSSTAKASA 207
Query: 2087 TSSPASESTTTSSPASESTTT 2107
++PA E + +PA+ S T
Sbjct: 208 PAAPAEEVKPSEAPAANSDQT 228
|
This family consists of several brain acid soluble protein 1 (BASP1) or neuronal axonal membrane protein NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent calmodulin-binding protein of unknown function. Length = 233 |
| >gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-07
Identities = 54/276 (19%), Positives = 92/276 (33%), Gaps = 38/276 (13%)
Query: 1878 SESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTT 1937
+E+T ++ + LL++ + P ES + P+ T +PE+ S
Sbjct: 307 AETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEE-------- 358
Query: 1938 SSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTT 1997
P P S T L +SP ++S S+S + +E
Sbjct: 359 -EPPQPKAVVPRPLSPYTAYEDL----KPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVV 413
Query: 1998 SSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTT 2057
SP S S P E E++ T SP + P S S T
Sbjct: 414 PSPGSASNV-------------PEVEPAQV---EAKKTRPLSPYARYEDLKPPTSPSPTA 457
Query: 2058 NNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSP--------ASESTTTSS 2109
S S++S+S T+ PA+ +T ++P + SP S + ++
Sbjct: 458 PTGVSPSVSSTSSVPAVPDTA-PATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAA 516
Query: 2110 PESESTTTSSPASESTTIEEQGVSPHSEKLSANEDP 2145
P + +S+ + E+ A P
Sbjct: 517 PVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKP 552
|
Length = 576 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-07
Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 17/231 (7%)
Query: 1898 NSPESESTTTNNPESESTTTSSPESESTTTSSLVS-------ESTTTSSPESESTTTSSP 1950
+SP S S ++ P + + S+ +SS S E+ + T +
Sbjct: 210 SSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRI 269
Query: 1951 ESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISP 2010
S S SS S SP ++ S + S+ +S S S+ S
Sbjct: 270 WEASGWNGP-SSRPGPASSSSSPR--ERSPSPSPSSPGSGPAPSSPRASSSSSSSRESS- 325
Query: 2011 VSESTTTSSPVSEST-TTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSS 2069
S ST++SS S + P + + S ++P+ + P+S + ++
Sbjct: 326 -SSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGR 384
Query: 2070 PASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSP 2120
P ++ A + + + S + S + P
Sbjct: 385 PTRR-RARAAVAGRARRRDATGR---FPAGRPRPSPLDAGAASGAFYARYP 431
|
Length = 1352 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 4e-07
Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 50/215 (23%)
Query: 403 GHTGAVMDLKFST-DGCHIFTCSTDQTLAVWDL-EKGQRIKKMKGHSTFVNSCDPVRRGQ 460
G G ++D+ F+ D +FT S D T+ W + E+G
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEG----------------------- 109
Query: 461 LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVL-TGGIDNDIKMWDLR 519
+ D V + KK V V+F+ +A VL + G D + +WD+
Sbjct: 110 --LTQNISDPIVHLQGHTKK-----------VGIVSFHPSAMNVLASAGADMVVNVWDVE 156
Query: 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579
V+ ++ HSD +T L + DGS + + + D + I D R V S H
Sbjct: 157 RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR------DGTIVSSVEAHA 210
Query: 580 FEKNLLRCAWSV-SGLYVTAG---SADKCVYIWDT 610
K+ RC W+ L +T G S + + +WDT
Sbjct: 211 SAKS-QRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244
|
Length = 493 |
| >gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-07
Identities = 40/215 (18%), Positives = 72/215 (33%), Gaps = 39/215 (18%)
Query: 1939 SPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTS 1998
SP + SS + + L S+ +S +S + +T+ S T+
Sbjct: 60 SPTEHESQQSSNNAGAEKNIDLSGSSSLSSG-----NQSSPSAANNTSDGHDASGVKNTA 114
Query: 1999 SPESESTTTISPVSESTTTSSPVSESTTT--------IS-----------------PESE 2033
P+ + P+S + T ++P IS +
Sbjct: 115 PPQ---DISAPPISPTPTQAAPPQTPNGQQRIELPGNISDALSQQQGQVNAASQNAQGNT 171
Query: 2034 STTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASE 2093
ST ++PA+ + + + T+ + + PA + +T PA+
Sbjct: 172 STLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAV------NHHKTATVAVPPATS 225
Query: 2094 STTTSSPASESTTTSSPESESTTTSSPASESTTIE 2128
S AS +S+P S T S AS S T+
Sbjct: 226 GKPKSGAASARALSSAPASHYTLQLSSASRSDTLN 260
|
Length = 327 |
| >gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (126), Expect = 5e-07
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 1897 TNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTT 1956
T+S S ++ N + + TT SP + +T+ + TTTS+P + + S+ + T+
Sbjct: 25 TSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTL-TTTSAPITTTAILSTNTTTVTS 83
Query: 1957 TSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTT 2016
T + V+ TTS+ + + TT T T + T TS+ + + TT S STT
Sbjct: 84 TGTTVTPVPTTSNASTINVTTKVTAQNITATEA----GTGTSTGVTSNVTT---RSSSTT 136
Query: 2017 TSSPVSESTTTISPESESTTTSSPASESTTTNNP 2050
+++ + TT++P S TS + TT P
Sbjct: 137 SATTRITNATTLAPTLSSKGTS--NATKTTAELP 168
|
Length = 234 |
| >gnl|CDD|115650 pfam07010, Endomucin, Endomucin | Back alignment and domain information |
|---|
Score = 53.2 bits (127), Expect = 5e-07
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 5/180 (2%)
Query: 1890 LLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSS 1949
L N+ NS + N+ + STT +S + +T + V++ TT + P+ +T+
Sbjct: 11 FLLSNSLCNSEGVKEAANNSLVTTSTTKASITTPNTVSLKNVNKPTTGTPPKGTTTSELL 70
Query: 1950 PESESTTTSSLVSE----STTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESEST 2005
S +T +SL + TTT+ ++TS + T S+ VS + +S ++E+
Sbjct: 71 KTSLMSTATSLTTPKHELKTTTTGVRKNESSTSKVTVTNVTLSNAVS-TLQSSQNKTENQ 129
Query: 2006 TTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESI 2065
++I S T+ S S S TT+ S+S T + K ST++ P+ SI
Sbjct: 130 SSIRTTEISPTSVLQPDASPKKTGTTSASLTTAETTSQSQDTEDGKIASTSSTTPSYSSI 189
|
This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells. Length = 259 |
| >gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 6e-07
Identities = 32/233 (13%), Positives = 83/233 (35%), Gaps = 21/233 (9%)
Query: 1912 SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESEST-TTSSLVSESTTTSSP 1970
E T S+ + + + + E ++ T ++ ++ + + +S
Sbjct: 377 PEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQVQAANAEAVAEADASA 436
Query: 1971 ESESTTTSSPESESTTTSSLVSEST--------------------TTSSPESESTTTISP 2010
E T + + ES ++L +E ++ PE +T
Sbjct: 437 EPADTVEQALDDESELLAALNAEQAVILSQAQSQGFEASSSLDADNSAVPEQIDSTAEQS 496
Query: 2011 VSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSP 2070
V + T + V +++ + + +++T + ++E T +N E + A
Sbjct: 497 VVNPSVTDTQVDDTSASNNSAADNTVDDNYSAEDTLESNGLDEGDYAQDSAPLDAYQDDY 556
Query: 2071 ASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASE 2123
+ S+ + + S+ S+ + + + S + S + +T +S A +
Sbjct: 557 VAFSSESYNALSDDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAAASLADD 609
|
Length = 944 |
| >gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-07
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 1901 ESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSL 1960
+ T T+ S + T P+S + T ++L + + +S E+T+ ++ + T
Sbjct: 758 PASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQT---- 813
Query: 1961 VSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTS 1998
TTTSSP TT+ + S STTT++ S++TT
Sbjct: 814 ---QTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTGG 848
|
Length = 872 |
| >gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-07
Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 37/180 (20%)
Query: 1968 SSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTT-SSPVSESTT 2026
S P++ + + P + T S T T SP + + +S S SP ES T
Sbjct: 75 SKPKTGTGKVAPPAATPT------SAPTPTPSPPASPASGMSAAPASAVEEKSPSEESAT 128
Query: 2027 TISPESESTTTSSPASESTTTNNPKSESTTT----------------------NNP--AS 2062
+PES ST+ S S++ +T SE TT NNP A
Sbjct: 129 ATAPESPSTSVPSSGSDAASTLVVGSERETTIEEIMEMGYEREEVERALRAAFNNPDRAV 188
Query: 2063 ESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPAS 2122
E + + P P T +S A + TT +P S + + + ++ A+
Sbjct: 189 EYLLTGIPED----PEQPEPVQQTAASTA--AATTETPQHGSVFEQAAQGGTEQPATEAA 242
|
All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378 |
| >gnl|CDD|217503 pfam03344, Daxx, Daxx Family | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 7e-07
Identities = 45/249 (18%), Positives = 75/249 (30%), Gaps = 20/249 (8%)
Query: 1892 SENTTTNSPESESTTTNNPE---SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTS 1948
+ + +++ ++ ST+ +P ES S E E E ESE
Sbjct: 414 TSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQ-----ESEEEEGE 468
Query: 1949 SPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTI 2008
E E + SE S E + E SE S
Sbjct: 469 DEEEEEEVEADNGSEEEMEGSSEGD----GDGEEPEEDAERRNSEMAGISRMSEGQQPRG 524
Query: 2009 SPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSS 2068
S V + P+ + E + A ES +++ + E T S +
Sbjct: 525 SSVQPESPQEEPLQPESMDAESVGEESDEELLAEESPLSSHTELEGVATPVETKISSSRK 584
Query: 2069 -SPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTI 2127
P ST+ + ++ T+T+ + S T P S ES +
Sbjct: 585 LPPPPVSTSLENDSATVTSTTRNGNVSPHTPQD-------EQPPSGRKRKRKEEVESEPL 637
Query: 2128 EEQGVSPHS 2136
Q + H+
Sbjct: 638 GNQYLRHHN 646
|
The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (128), Expect = 8e-07
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 7/156 (4%)
Query: 1297 SRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY--G 1354
+ L E+ + SPD +LL D T+K++ LD + I
Sbjct: 48 DSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL 107
Query: 1355 HKLPVLSLDMSY---DSTLIATGSGDRTVKVWGL-DYGDCHKSLLAHEDSVTGVTFVPKT 1410
H V L +S +S L+A+ S D TVK+W L G ++L H +SVT + F P
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167
Query: 1411 HYFFTTS-KDGRVKQWDADNFERIVTLHICSCSLNS 1445
+ S DG +K WD + + TL + ++S
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203
|
Length = 466 |
| >gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (129), Expect = 8e-07
Identities = 52/229 (22%), Positives = 103/229 (44%), Gaps = 38/229 (16%)
Query: 1947 TSSPESESTTTSSLVSESTTT-SSPESESTT---------TSSPESESTTTSSLVSESTT 1996
TS+P T + E+TT ++P +E+ T T +P+ T + +V ++ T
Sbjct: 144 TSTP---VAPTQEVKKETTTQQAAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNAT 200
Query: 1997 TSSPESEST------------------TTISPVSESTTTSSPVSESTTTISPESESTTTS 2038
T + +S T +S S + ++ T +P++E T
Sbjct: 201 THAVKSGDTIWALSVKYGVSVQDIMSWNNLSSSSIYVGQKLAIKQTANTATPKAE-VKTE 259
Query: 2039 SPASESTTTNNPKSESTTTNNPAS---ESITSSSPASESTTTSSPASESTTTSSPASEST 2095
+PA+E K E+T TN + E+ T A ++ T ++ + + +T++ A+++
Sbjct: 260 APAAEKQAAPVVK-ENTNTNTATTEKKETTTQQQTAPKAPTEAAKPAPAPSTNTNANKTN 318
Query: 2096 TTSSPASESTTTSSP--ESESTTTSSPASESTTIEEQGVSPHSEKLSAN 2142
T ++ + +T TS+P + + T S+ + S T QG S ++ SA+
Sbjct: 319 TNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSSAS 367
|
Length = 481 |
| >gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160 | Back alignment and domain information |
|---|
Score = 54.0 bits (129), Expect = 9e-07
Identities = 56/271 (20%), Positives = 121/271 (44%), Gaps = 27/271 (9%)
Query: 1880 STVVMSTLN--SLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTT 1937
S ++ ++ N +++S N S S + N S S+ S+ S STT+++ + S +T
Sbjct: 78 SGIIKASFNLIAMISANIQAIQSGSGSASGN---SSSSANSTSNSNSTTSNNSTTSSNST 134
Query: 1938 SSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTT 1997
++ + +++++S S T+ +S+VS T + +S+ + S +L + +
Sbjct: 135 TTTSNSTSSSNSTSSGLTSGASVVSLIDTCAWVYQDSSVGIAYLMVSIL--ALFYGQSVS 192
Query: 1998 SSPESE-------STTTISPVSESTTTSSPVSESTTTIS---------PESESTTTSSPA 2041
+ P ++ + + + V +S + ++ TI+ + + +
Sbjct: 193 APPYADLGIPALPANCSGAGVPQSVQIKAAIAYINITINFINLTGQQFEDLQGPVATDCG 252
Query: 2042 SESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPA 2101
+TT+ P A E+ + S ++ ST+ S+ S STT S+ STTT++
Sbjct: 253 CPNTTSVAPLVAEWEAILAALEAFANGSASANSTSNSNSTSNSTTNSN----STTTTNST 308
Query: 2102 SESTTTSSPESESTTTSSPASESTTIEEQGV 2132
+ + +TSS S + + + TI Q +
Sbjct: 309 TSTNSTSSSNSSTIAGCIDIAANFTIALQNL 339
|
This family consists of several special lobe-specific silk protein SSP160 sequences which appear to be specific to Chironomus (Midge) species. Length = 758 |
| >gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-06
Identities = 39/234 (16%), Positives = 86/234 (36%), Gaps = 12/234 (5%)
Query: 1891 LSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSP 1950
++ +++ E N+ + + S S S T + + + + + + S+++
Sbjct: 20 SKKSPPSSTTSQELMNGNSTPNSFSPIPSKASSSATFTLNLPINNSVNHKITSSSSSRRK 79
Query: 1951 ESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISP 2010
S S + + S S + S +++ +P + S S S ++T + S+ T+S
Sbjct: 80 PSGSWSVAISSSTSGSQSLLMELPSSSFNPSTSSRNKS--NSALSSTQQGNANSSVTLSS 137
Query: 2011 VSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSP 2070
+ S+ +S S +T S + +T S+++ + ++S
Sbjct: 138 STASSMFNSNKLPLPNPNHSNSATTNQSGSSFINT------PASSSSQPLTNLVVSSIKR 191
Query: 2071 ASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASES 2124
T+ S + SS S T S+ S + P S + S
Sbjct: 192 FPYLTSLSPFFNYLIDPSSD---SATASADTS-PSFNPPPNLSPNNLFSTSDLS 241
|
Length = 777 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-06
Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 4/175 (2%)
Query: 1954 STTTSSLVSESTTTSSP--ESESTTTSSPES--ESTTTSSLVSESTTTSSPESESTTTIS 2009
+ TTS S T S P S+ T S P + T T++ ST + +T++
Sbjct: 171 AVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNP 230
Query: 2010 PVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSS 2069
S + P + S S+ T K+ T+N + S +
Sbjct: 231 EPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPP 290
Query: 2070 PASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASES 2124
P ++ T P T T+ S +S P ++ T+ + P S
Sbjct: 291 PTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNLVDCKELDPPKPNS 345
|
Length = 408 |
| >gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-06
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 1893 ENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESE---STTTSS 1949
T T+ S + T P+S + T ++ + + +S++ E+T+ ++ TTTSS
Sbjct: 760 SGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSS 819
Query: 1950 PESESTTTSSLVSESTTTSSPESESTTTS 1978
P TT+ + S STTT++ S++TT
Sbjct: 820 PSPTQTTSPTQTSTSTTTTTSPSQTTTGG 848
|
Length = 872 |
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 1e-06
Identities = 45/215 (20%), Positives = 70/215 (32%), Gaps = 19/215 (8%)
Query: 1898 NSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTS----SPESE 1953
S + + + + E + E T T + T P E
Sbjct: 555 QSIIKQGSEDTDVDMEEAISEQEEKHEITIVDCAEPVRNTQNSLQIDTLDHESSEQPLEE 614
Query: 1954 STTTSSLVSESTTTSSP-ESESTTTSSPESESTT-TSSLVSESTTTSSPE-------SES 2004
S VS+ T SP + S +S S + S+ VS + ++ E S S
Sbjct: 615 KNALHSSVSKLNTEESPSKMVEIRPSCQDSVSESGVSTGVSVADESNDSENELVNCASPS 674
Query: 2005 TTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASES 2064
+ +I PV S SP + I +S TSS + S + +S + E
Sbjct: 675 SLSIVPVEVSPVLKSPTLSVSPRIRNSRKSLRTSSMLTAS------QKDSEDESKLTPED 728
Query: 2065 ITSSSPASESTTTSSPASESTTTSSPASESTTTSS 2099
S S +SS S + S A +S
Sbjct: 729 AEPSFAKSMKNNSSSALSTQKSKSFLAPTEHLAAS 763
|
Length = 1320 |
| >gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-06
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 2357 HSVKIIGWGKSSQN---EPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIE 2402
H++ ++GWG+ N YW+ NS+ + WG++G FKI RG N IE
Sbjct: 620 HAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIE 668
|
Length = 693 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-06
Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 7/189 (3%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE 1951
P T E++ + P S SS S S SP ++ S
Sbjct: 250 GPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASS--SSSPRERSPSPSPSSPGSGP 307
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPV 2011
+ S+ +S S S+ SS S S+++ S + + S S + S P SP
Sbjct: 308 APSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRP-PPPADPSSPR 366
Query: 2012 SESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPA 2071
+ +P S + + P ++ A + + S + A
Sbjct: 367 KRPRPSRAPSSPAASAGRPTRR-RARAAVAGRARRRDAT---GRFPAGRPRPSPLDAGAA 422
Query: 2072 SESTTTSSP 2080
S + P
Sbjct: 423 SGAFYARYP 431
|
Length = 1352 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-06
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 15/244 (6%)
Query: 1897 TNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTT 1956
P + ++ S S +S ++V+ + E + P +E+
Sbjct: 22 PRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPA 81
Query: 1957 ----TSSLVSESTTT--SSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISP 2010
++ S ST S S T P S + S SP + + + P
Sbjct: 82 NESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPP-PSPAPDLSEMLRP 140
Query: 2011 VSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSP 2070
V + + S SS + + ++P+ + ++P +E S+ P
Sbjct: 141 VGSPGPPPAASPPAAGASPAAVASDAASSRQA-ALPLSSPEETARAPSSPPAEPPPSTPP 199
Query: 2071 ASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQ 2130
A+ + P S+ S+ AS PA + + S+ +SS S +
Sbjct: 200 AA---ASPRPPRRSSPISASASSPA----PAPGRSAADDAGASSSDSSSSESSGCGWGPE 252
Query: 2131 GVSP 2134
P
Sbjct: 253 NECP 256
|
Length = 1352 |
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-06
Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 16/229 (6%)
Query: 1900 PESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSS 1959
P+ E+ T + + E + SS ++T + +++ + S+S+ + +PE E +
Sbjct: 202 PKEENHTLSVTDKEKSEASSK-GLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGK 260
Query: 1960 LVSESTTTSSPE-SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTS 2018
S + S T ++ + S P S ST ++ +S
Sbjct: 261 DHHHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHSNKSRPSSSSTN--GSKETTSNSS 318
Query: 2019 SPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTS 2078
S + S + SS +++ + N S + ++ +SS +ES
Sbjct: 319 SAAAGSIGS---------KSSKSAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKR 369
Query: 2079 SPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTI 2127
+ S S S S +++ E+ PE++ +T S+ I
Sbjct: 370 ASKSSSGARDSKKDASGMSANGTVENCI---PENKISTPSAIERLEQDI 415
|
This entry is a highly conserved protein present in eukaryotes. Length = 680 |
| >gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-06
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 8/143 (5%)
Query: 1914 STTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESE 1973
S+ +P++ + V S P E+ + T TS S
Sbjct: 712 SSEAKNPDTVKIGQALTVYGSLEVF-PAGENWGFIPTTKRVKVRIMDPASGTGTSITTSG 770
Query: 1974 STTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESE 2033
+ T P+S T T + +S S +++ TT++ T T + S + T +
Sbjct: 771 TFTAEVPQSP-TKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPT-----Q 824
Query: 2034 STTTSSPASESTTTNNPKSESTT 2056
+T+ + ++ +TTT +P S++TT
Sbjct: 825 TTSPTQTSTSTTTTTSP-SQTTT 846
|
Length = 872 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 395 CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433
+ + + GHTG V + FS DG + + S D T+ VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 8/144 (5%)
Query: 1929 SLVSESTTTSSPESESTTTSSPESE-STTTSSLVSESTTTSSPESESTTTSS--PESEST 1985
+L ++ + +E + E S + + S S T S +SE
Sbjct: 12 ALSAQPALAAQAAAEYPDERYLDEEGSGDDDEFIDDEMDDEYSGSGSGATPSDDEDSEPV 71
Query: 1986 TTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASEST 2045
TTS+ + TTTSS S TTT S ++++ T S +TT SP SE+ T + + ST
Sbjct: 72 TTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTT--SP-SETDTEEATTTVST 128
Query: 2046 TTNNPKSESTTTNNPASESITSSS 2069
T S T+ S+++
Sbjct: 129 ETPTEGGSSAATD--PSKNLLERK 150
|
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors. Length = 207 |
| >gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 2052 SESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPE 2111
S +T +++ SE +T+S+ + TTTSS S TTT+S +++++ T S +TT SP
Sbjct: 58 SGATPSDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTT--SP- 114
Query: 2112 SESTTTSSPASESTTIEEQGVSPHSEKLSAN 2142
SE+ T + + ST +G S + S N
Sbjct: 115 SETDTEEATTTVSTETPTEGGSSAATDPSKN 145
|
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors. Length = 207 |
| >gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-06
Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 9/213 (4%)
Query: 1874 TNNNSESTVVMSTLNSLLSENTTTNSPES-ESTTTNNPESESTTTSSPESESTTTSSLVS 1932
++N+ ST N+ LS++ + ES E + N + +S P SES+ + L S
Sbjct: 284 DDSNTMEVKSDSTENAGLSQSREHSRSESQEDSEENQSQEDSQEVQDPSSESSQEADLPS 343
Query: 1933 ESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVS 1992
+ ++ S E E + S ++ TTS + + SS E T SS ES+ST
Sbjct: 344 QENSSESQE-EVVSESRGDNPDNTTSHSEDQEDSESSEEDSLDTPSSSESQST------E 396
Query: 1993 ESTTTSSPESESTTTISPVS-ESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPK 2051
E + S ES S++ SP S E +SS + + S ES S + S + ++
Sbjct: 397 EQADSESNESLSSSEESPESTEDENSSSQEGLQSHSASTESRSQESQSEQDSRSEEDDSD 456
Query: 2052 SESTTTNNPASESITSSSPASESTTTSSPASES 2084
S+ ++ + S S S+S + E + ES
Sbjct: 457 SQDSSRSKEDSNSTESASSSEEDGQPKNTEIES 489
|
This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown. Length = 514 |
| >gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-06
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 2050 PKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTT-SSPASESTTTS 2108
PK+ + PA+ +P S T T SP + + S A S SP+ ES T +
Sbjct: 77 PKTGTGKVAPPAA------TPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATAT 130
Query: 2109 SPESESTTTSSPASESTT 2126
+PES ST+ S S++ +
Sbjct: 131 APESPSTSVPSSGSDAAS 148
|
All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378 |
| >gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 3e-06
Identities = 59/252 (23%), Positives = 102/252 (40%), Gaps = 11/252 (4%)
Query: 1901 ESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSL 1960
E E + ES + P + S + E +S + S +E+ S
Sbjct: 245 EDEEQASTQDSGESQSVEYPSRKFFRKSRISEEDGRGELDDSNTMEVKSDSTENAGLSQS 304
Query: 1961 VSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSES-----T 2015
S + S +SE + E SS S+ S E+ S + VSES
Sbjct: 305 REHSRSESQEDSEENQSQEDSQEVQDPSSESSQEADLPSQENSSESQEEVVSESRGDNPD 364
Query: 2016 TTSSPVSESTTTISPESESTTTSSPASESTTTNNP-KSESTTTNNPASESITSS----SP 2070
T+S + + S E +S T S +SES +T SES + + + ES S+ S
Sbjct: 365 NTTSHSEDQEDSESSEEDSLDTPS-SSESQSTEEQADSESNESLSSSEESPESTEDENSS 423
Query: 2071 ASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQ 2130
+ E + S ++ES + S + + + + S+S +S + +S +T S +S + +
Sbjct: 424 SQEGLQSHSASTESRSQESQSEQDSRSEEDDSDSQDSSRSKEDSNSTESASSSEEDGQPK 483
Query: 2131 GVSPHSEKLSAN 2142
S KL+ +
Sbjct: 484 NTEIESRKLTVD 495
|
This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown. Length = 514 |
| >gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 42/245 (17%), Positives = 67/245 (27%), Gaps = 71/245 (28%)
Query: 2187 CKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSD 2246
+ V +QG+ SCW A ++A +
Sbjct: 5 RPLRLTPVKNQGSRGSCW--------------------------------AFASAYALES 32
Query: 2247 RICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW-MYWINAGLVDGG 2305
I+ LSPQ+L C C GG +A G+
Sbjct: 33 AYRIKGGEDEYVDLSPQYLY----ICANDECLGINGSCDGGGPLSALLKLVALKGIPPEE 88
Query: 2306 D--YGTHDVSMGRYIEGIGHAASV-------------------MGSSNPEVNNFEKVIRL 2344
D YG E +AA V + P V F+
Sbjct: 89 DYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGF 148
Query: 2345 YSCEGSINPRYI------------HSVKIIGWGKS-SQNEPYWLCTNSYNQGWGEQGLFK 2391
+ I I H+V I+G+ + + + ++ NS+ WG+ G +
Sbjct: 149 DRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGR 208
Query: 2392 IRRGV 2396
I
Sbjct: 209 ISYED 213
|
Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223 |
| >gnl|CDD|216860 pfam02063, MARCKS, MARCKS family | Back alignment and domain information |
|---|
Score = 51.4 bits (122), Expect = 3e-06
Identities = 45/236 (19%), Positives = 78/236 (33%), Gaps = 31/236 (13%)
Query: 1900 PESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSS 1959
E + E +S E + + +E + + E E+ T S+ ++E T S
Sbjct: 69 TGKEEAASAAAAEEKEAAASTEPDKEPAEAEPAEPASPAEAEGEAAT-STEKAEDGATPS 127
Query: 1960 LVSES----------------TTTSSPESESTTTSSPESESTTTSSL-VSESTTTSSPES 2002
SE+ + S +++ E+E E ++PE+
Sbjct: 128 PSSETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGEGAEAEGAAAEKEGAKEEAAAAAPEA 187
Query: 2003 ESTTTISPVSE----STTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTN 2058
S + E + E PE A E P++E
Sbjct: 188 GSGEEAAAPGEEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEK-----PQAEEAK-- 240
Query: 2059 NPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESES 2114
A E PA E+ SS A E+ A+ + ++P E+ + SSPE+
Sbjct: 241 -AAEEQKAEEKPAEEAGA-SSAAQEAPAAEQEAAPAEEPAAPPQEACSESSPEAPP 294
|
Length = 296 |
| >gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2) | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-06
Identities = 53/289 (18%), Positives = 94/289 (32%), Gaps = 21/289 (7%)
Query: 1896 TTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESEST 1955
++ + + T+S E+ SL+ +T S SE T S
Sbjct: 457 LSSVNSKPEAVASTKIAREVTSSGHEAVPKAVQSLLLGATNDSPIPSEFTILDRKSELSI 516
Query: 1956 TTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSEST 2015
V ++ S+ + +E T +S + E +SP+
Sbjct: 517 --ERTVKPVSSEFGLPSQREDKLAIPTEGTQNLQGIS----DHPEQFEFQNELSPLETKN 570
Query: 2016 TTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASEST 2075
S+ S++ T SP E + SS S +N T NP S A E
Sbjct: 571 NESNLSSDAETEGSPNPEMPSWSSVTVPSEALDN-----YETTNP--------SNAKEVR 617
Query: 2076 TTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTS-SPASESTTIEEQGVSP 2134
+ ++T A ++ E + ESES + S S+T+E Q S
Sbjct: 618 NFAETGIQTTNVGESADLLLISNPMEVEPMESEKEESESDGSFIEVDSVSSTLELQVPSK 677
Query: 2135 HSEKLSANEDPEEFPNEDVFEHTFAEIPNIDHSNQTDEAIPETFDAREE 2183
+ E+ E + EI ++ ++ I + ++
Sbjct: 678 SQPTDESEENAEN-KVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKD 725
|
All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1034 |
| >gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 4e-06
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 20/242 (8%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE 1951
E +N+ E +S +T E+ S S + S +S S E +S P
Sbjct: 281 GELDDSNTMEVKSDST-----ENAGLSQSREHSRSESQ--EDSEENQSQE-DSQEVQDPS 332
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPV 2011
SES+ + L S+ ++ S E E + S ++ TTS + + SS E T S
Sbjct: 333 SESSQEADLPSQENSSESQE-EVVSESRGDNPDNTTSHSEDQEDSESSEEDSLDTPSS-- 389
Query: 2012 SESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKS-ESTTTNNPASESITSSSP 2070
SES +T S +ES ++S + EST N S E +++ ++ES + S
Sbjct: 390 SESQSTEEQAD------SESNESLSSSEESPESTEDENSSSQEGLQSHSASTESRSQESQ 443
Query: 2071 ASESTTTSSPASESTTTSSPASESTTTSSPAS--ESTTTSSPESESTTTSSPASESTTIE 2128
+ + + + S+S +S +S +T S +S E + E ES + A + I
Sbjct: 444 SEQDSRSEEDDSDSQDSSRSKEDSNSTESASSSEEDGQPKNTEIESRKLTVDAYHNKPIG 503
Query: 2129 EQ 2130
+Q
Sbjct: 504 DQ 505
|
This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown. Length = 514 |
| >gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 5e-06
Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 8/145 (5%)
Query: 1974 STTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESE 2033
S+ +P++ + V S P E+ I + T T S
Sbjct: 712 SSEAKNPDTVKIGQALTVYGSLEVF-PAGENWGFIPTTKRVKVRIMDPASGTGTSITTSG 770
Query: 2034 STTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASE 2093
+ T P S + T S +N TS T T + T++ SP ++
Sbjct: 771 TFTAEVPQSPTKTETTLSY-SAYSNTSILIETTSVVITKTVTQTQTT----TSSPSP-TQ 824
Query: 2094 STTTSSPASESTTTSSPESESTTTS 2118
+T+ + ++ +TTT+SP S++TT
Sbjct: 825 TTSPTQTSTSTTTTTSP-SQTTTGG 848
|
Length = 872 |
| >gnl|CDD|217503 pfam03344, Daxx, Daxx Family | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 5e-06
Identities = 51/266 (19%), Positives = 77/266 (28%), Gaps = 25/266 (9%)
Query: 1902 SESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLV 1961
+ S +++ ++ ST+ SP S ES S E E E E
Sbjct: 414 TSSRSSDPSKASSTSGESPSMAS-------QESEEEESVEEEEE-----EEEEEEEEEQE 461
Query: 1962 SESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPV 2021
SE E E + SE S S E SE S
Sbjct: 462 SEEEEGEDEEEEEEVEADNGSEEEMEGS----SEGDGDGEEPEEDAERRNSEMAGISRMS 517
Query: 2022 SESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPA 2081
S + P + E + A ES SS E T
Sbjct: 518 EGQQPRGSSVQPESPQEEPLQPESMDAESVGEESDEELLAEESPLSSHTELEGVATPVET 577
Query: 2082 SESTTTS-SPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLS 2140
S++ P ST+ + ++ T+T+ + S T +EQ S K
Sbjct: 578 KISSSRKLPPPPVSTSLENDSATVTSTTRNGNVSP--------HTPQDEQPPSGRKRKRK 629
Query: 2141 ANEDPEEFPNEDVFEHTFAEIPNIDH 2166
+ E N+ + H +E +
Sbjct: 630 EEVESEPLGNQYLRHHNGSEKDGLPA 655
|
The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715 |
| >gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 5e-06
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 1977 TSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESEST- 2035
+ S + T SS ++ S+ + ++++ S +TT +S V+ S+ + P +
Sbjct: 302 AAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLP 361
Query: 2036 -TTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPAS 2092
T + PA+E +T T ++ +ITS+ A+ TT+ A S SP S
Sbjct: 362 GTVALPAAEPVNMQPQPMSTTETQQSSTGNITST--ANGPTTSLPAAPASNIPVSPTS 417
|
Length = 421 |
| >gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 6e-06
Identities = 34/189 (17%), Positives = 81/189 (42%), Gaps = 14/189 (7%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSP--------ESE 1943
T ++ TT+ +S T + + ++S + +SS +
Sbjct: 186 VAETKETPVVDQNATTHAVKSGDTIWALSVKYGVSVQDIMSWNNLSSSSIYVGQKLAIKQ 245
Query: 1944 STTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESE 2003
+ T++P++E T + + E+ +T T++ E + TTT + T +P
Sbjct: 246 TANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETTT----QQQTAPKAPTEA 301
Query: 2004 STTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASE 2063
+ +P + T ++ + +T T + + ++T S + +T +N + +T N +S
Sbjct: 302 AKP--APAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSN 359
Query: 2064 SITSSSPAS 2072
+ ++SS ++
Sbjct: 360 NNSNSSASA 368
|
Length = 481 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-06
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWS 390
+ L+GH G + + PDG+Y+AS D I +W
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1109
+L GH PV S+ S D L+A+GS D TV+VW
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1167 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
+L GH PV S+ S D L+A+GS D TV+VW
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1383
+L GH PV S+ S D L+A+GS D TV+VW
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 6e-06
Identities = 39/224 (17%), Positives = 84/224 (37%), Gaps = 15/224 (6%)
Query: 1970 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTIS 2029
P++ P S ++ + S + +++ +S + + + S ++ + + + +
Sbjct: 373 PDARGAWAGGPHSNASYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGYNNAPNSNT 432
Query: 2030 PESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSS---PASESTT 2086
P + +++P S +N P S +N P S + S++P S + S A +
Sbjct: 433 PYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHSAYHAAYQHRA 492
Query: 2087 TSSPASESTTTSSPASE-------STTTSSPESESTTTSSPASESTTIEEQGVSPHSEKL 2139
+ PA+ T + PA+ ++ + S ++ + T + E
Sbjct: 493 ANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGSAPYGGNAATTADPNGIAKRE-- 550
Query: 2140 SANEDPEEFPNEDVFEHTFAEIPNIDHSNQTDEAIPETFDAREE 2183
+ PE N +E + E S + E E D EE
Sbjct: 551 ---DHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
|
Length = 1560 |
| >gnl|CDD|216860 pfam02063, MARCKS, MARCKS family | Back alignment and domain information |
|---|
Score = 50.2 bits (119), Expect = 6e-06
Identities = 45/241 (18%), Positives = 81/241 (33%), Gaps = 29/241 (12%)
Query: 1904 STTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSP---ESESTTTSSL 1960
S E +++ E +S + E+E +SP E E+ T++
Sbjct: 63 SAPAEETGKEEAASAAAAEEKEAAASTEPDK---EPAEAEPAEPASPAEAEGEAATSTE- 118
Query: 1961 VSESTTTSSPESES----------------TTTSSPESESTTTSSLVSESTTTSSPES-E 2003
+E T SP SE+ + S +++ +E + E
Sbjct: 119 KAEDGATPSPSSETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGEGAEAEGAAAEKEGAKE 178
Query: 2004 STTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASE 2063
+P + S ++ E E E+ + +E K E P +E
Sbjct: 179 EAAAAAPEAGSGEEAAAPGEEAGAAGAEGEAGEEPAADAEPEQPE-AKPEEAAPEKPQAE 237
Query: 2064 SITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASE 2123
+ A E PA E+ SS A E+ A+ + ++P E+ + SSP +
Sbjct: 238 E---AKAAEEQKAEEKPAEEAGA-SSAAQEAPAAEQEAAPAEEPAAPPQEACSESSPEAP 293
Query: 2124 S 2124
Sbjct: 294 P 294
|
Length = 296 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-06
Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 13/175 (7%)
Query: 1884 MSTLNSLLSENTTTNSPESESTTTNN--------PESESTTTSSPESESTTTSSLVSEST 1935
TL + + E + N P S ++ P ++ S + S+ +S S S+
Sbjct: 262 PITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSS 321
Query: 1936 TTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSEST 1995
SS S S+++ S + + S S + S P + +S + S S
Sbjct: 322 RESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRP---RPSRAPSSP 378
Query: 1996 TTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNP 2050
S+ + V+ + S + AS + P
Sbjct: 379 AASAGRPTRRRARAAVAGRARRRD--ATGRFPAGRPRPSPLDAGAASGAFYARYP 431
|
Length = 1352 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-06
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 396 ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433
E + + GHTG V + FS DG ++ + S D T+ +WD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295) | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 8e-06
Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 26/242 (10%)
Query: 1889 SLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTS 1948
+L N +P S T P SEST T +P + + +EST+T+S + + S
Sbjct: 80 ALPMPNLAPITPPSSEPTPAPPSSESTATRTP--DPNQQALESTESTSTTSADCNDSEQS 137
Query: 1949 SPESESTTTSSLVSESTTTSSPESESTTTS----SPESESTTTSSLVSESTTTSSPESES 2004
S + + S T+TSS + +T+ SP S++ ST +
Sbjct: 138 STPNLN-------SSDTSTSSSGALPSTSVVRGFSPSHISSSYR-----STAQLNKAPSP 185
Query: 2005 TTTISPVSESTTTSSPVSE--STTTISPESESTTTSSPASESTTTNNPKSESTTTNNPAS 2062
T + P + + + T+ S S + ++ +PK S P
Sbjct: 186 TKSAEPTAAPQAKPELPKKKQAMFTLGGSSGDDDEDS-FEDRMSSQDPKRSSLPKPKPKM 244
Query: 2063 ESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPAS 2122
+ S +S + + T + + T + P T+ E T
Sbjct: 245 FQLGGSDELGKSLPSLMSPRKKTASFK--EQVVTRTFPER---TSDDDEDAIETEEDDVD 299
Query: 2123 ES 2124
ES
Sbjct: 300 ES 301
|
This family is conserved in fungi but the function is not known. Length = 509 |
| >gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (116), Expect = 9e-06
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 1896 TTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESEST 1955
TT SP + +TN + TTTS+P TT++++S +TTT + + T S ++
Sbjct: 44 TTPSPSASGPSTNQSTTL-TTTSAP----ITTTAILSTNTTTVTSTGTTVTPVPTTSNAS 98
Query: 1956 TTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSEST 2015
T + + + T TS+ + + TT S STT+++ + TT++P S
Sbjct: 99 TINVTTKVTAQNITATEAGTGTSTGVTSNVTTR---SSSTTSATTRITNATTLAPTLSSK 155
Query: 2016 TTSSPVSESTTTISPESESTTTSS 2039
TS+ + + E + S
Sbjct: 156 GTSNATKTTAELPTVPDERQPSLS 179
|
Length = 234 |
| >gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (116), Expect = 9e-06
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 8/169 (4%)
Query: 1921 ESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSP 1980
E+ TSS S ++ + + + TT SP + +T+ + TTTS+P + + S+
Sbjct: 19 ETSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTL-TTTSAPITTTAILSTN 77
Query: 1981 ESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSP 2040
+ T+T + V+ TTS+ + + TT T T + ST S + TT S
Sbjct: 78 TTTVTSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTS----NVTTRSS 133
Query: 2041 ASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSS 2089
++ S TT + + TT P S +S+ + + E + S
Sbjct: 134 STTSATT---RITNATTLAPTLSSKGTSNATKTTAELPTVPDERQPSLS 179
|
Length = 234 |
| >gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045) | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 9e-06
Identities = 53/268 (19%), Positives = 76/268 (28%), Gaps = 32/268 (11%)
Query: 1878 SESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTT 1937
SE+T+V + + S P S S + S+ +
Sbjct: 79 SEATIVRQAKEG-------ERPATPPEARPDEGFVRPSLPSHPRSRSASVSNSKDGDRPS 131
Query: 1938 SSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTT- 1996
P S S T T + L S SP+ + PE + + S ++
Sbjct: 132 DLPPSPSKTMDPRRWSPTKATWLESALNKPESPKHKPQPPQQPEWKKDLSRLRQSRASVD 191
Query: 1997 ---TSSPESEST----TTISPVSESTTTSSPVSEST------------TTISPESESTTT 2037
T+S + + T P S S + S S T
Sbjct: 192 LGRTNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTE 251
Query: 2038 SSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTT 2097
S A + T +PKS +E S S S AS + S S S
Sbjct: 252 KSSAPKPRETLDPKSPEKAPPIDTTEEELKSP--EASPKESEEASARKRSPSLLSPSPKA 309
Query: 2098 SSP---ASESTTTSSPESESTTTSSPAS 2122
SP AS + P S SP
Sbjct: 310 ESPKPLASPGKSPRDPLSPRPKPQSPPV 337
|
This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414 |
| >gnl|CDD|118131 pfam09595, Metaviral_G, Metaviral_G glycoprotein | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 10/152 (6%)
Query: 1997 TSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTT 2056
TSSP +ES+ ++P S+ T S ES + ++ S T ++T
Sbjct: 32 TSSPPTESSKKTPTTPTDNPDTNPNSQHPTQQSTESSTLPAATSESHLETEPTSTPDTT- 90
Query: 2057 TNNPASESITSSSPASES-------TTTSSPASESTTTSSPASESTTTSSPASESTTTSS 2109
N ++P S S ++ T +P + ST + + T+S+
Sbjct: 91 --NRQQTVDRHTTPPSSSRTQTTQAVHEKKNTRTTSRTQTPPTTSTAAVQTTTTTNTSST 148
Query: 2110 PESESTTTSSPASESTTIEEQGVSPHSEKLSA 2141
+ +TT+ P S +TT + S + + SA
Sbjct: 149 GKEPTTTSVQPRSSATTQSHEETSQANPQSSA 180
|
This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated. Length = 183 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 1e-05
Identities = 44/218 (20%), Positives = 87/218 (39%), Gaps = 7/218 (3%)
Query: 1937 TSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTT 1996
T+SP+ ++ T+ + S S + ST+++ ++EST + + + TS L S
Sbjct: 25 TASPDGRASPTNEDQRSSGRNSP-SAASTSSNDSKAESTKKPNKKIKEEATSPLKSTKRQ 83
Query: 1997 TSSPESESTTTISPVSESTTT---SSPVSESTTTISPESESTTTSSPASESTTTNNPKSE 2053
P S++ ++ + T S P S S E E ++ S + +++PK +
Sbjct: 84 REKPASDTEEPERVTAKKSKTQELSRPNSPSEGEGEGEGEGESSDSRSVNEEGSSDPK-D 142
Query: 2054 STTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESE 2113
N +S SI S +ES + SS + P S + + S +P ++
Sbjct: 143 IDQDNRSSSPSIPSPQD-NESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQ 201
Query: 2114 STTTSSPASESTTIEEQGVSPHSEKLSA-NEDPEEFPN 2150
+ + + +SA + P+ P+
Sbjct: 202 AVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPS 239
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-05
Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 10/159 (6%)
Query: 1940 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSS 1999
P + S ++ S V + S + T+ V
Sbjct: 700 PYTNSLYKATTLSSEAKNPDTVKIGQALTVYGSLEVFPAGENWGFIPTTKRV---KVRIM 756
Query: 2000 PESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNN 2059
+ T T S + T P S + T + + + +S E+T+ K+ + T
Sbjct: 757 DPASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQT--- 813
Query: 2060 PASESITSSSPASESTTTSSPASESTTTSSPASESTTTS 2098
T+SSP+ TT+ + S STTT++ S++TT
Sbjct: 814 ----QTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTGG 848
|
Length = 872 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 1071 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1109
+ + +L GH PV S+ S D +A+GS D T+K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 1345 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1383
+ + +L GH PV S+ S D +A+GS D T+K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 106 TTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWD 145
+ +++ T GH +T + + P G LA+GS D I LWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 25/177 (14%)
Query: 1921 ESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSP 1980
+ ++ T +T TS+P T S P S ++ S+ + + SP ES T ++P
Sbjct: 76 KPKTGTGKVAPPAATPTSAPTP---TPSPPASPASGMSAAPASAVEEKSPSEESATATAP 132
Query: 1981 ESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSEST--------------- 2025
ES ST+ S S++ +T SE TTI + E V +
Sbjct: 133 ESPSTSVPSSGSDAASTLVVGSERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLL 192
Query: 2026 TTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPAS 2082
T I + E + ST + TT P S+ + + ++ A+
Sbjct: 193 TGIPEDPEQPEPVQQTAASTA-------AATTETPQHGSVFEQAAQGGTEQPATEAA 242
|
All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378 |
| >gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-05
Identities = 40/243 (16%), Positives = 86/243 (35%), Gaps = 39/243 (16%)
Query: 1910 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSS 1969
P + S+ ++ +S + ++ P + T+S E + T VS +S+
Sbjct: 23 PSTSSSDQTASGEKSIDLAGNATDQANGVQP---APGTTSAEQTAGNTQQDVSLPPISST 79
Query: 1970 PESESTTTSSPESESTT------------------TSSLVSESTTTSSPESESTTTISPV 2011
P ++ T + + + +++ ST + P T++PV
Sbjct: 80 P-TQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEP-----ATVAPV 133
Query: 2012 ----SESTTTSSPVSESTTTISP-------ESESTTTSSPASESTTTNNPK-SESTTTNN 2059
+ T + +E T P E + ++ PK +E
Sbjct: 134 RNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVA 193
Query: 2060 PASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSS 2119
+S+PA + T T++P ++ + A+ + + + + S+P S T S
Sbjct: 194 STKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLKSAPSSHYTLQLS 253
Query: 2120 PAS 2122
+S
Sbjct: 254 SSS 256
|
Length = 328 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-05
Identities = 34/242 (14%), Positives = 68/242 (28%), Gaps = 23/242 (9%)
Query: 1897 TNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTT 1956
T PE + + + + SSP ++ + +
Sbjct: 2636 NEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSL 2695
Query: 1957 TSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSES-- 2014
TS P T +P + S+ ++ ++ +P +
Sbjct: 2696 TSL-------ADPPPPPPTPEPAPHA---LVSATPLPPGPAAARQASPALPAAPAPPAVP 2745
Query: 2015 TTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASES 2074
++P + P TT+ P + + PA S++ S + S
Sbjct: 2746 AGPATPGGPARPARPP-----TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS 2800
Query: 2075 TTTSSPASESTTTSSPASESTTTSSPASES--TTTSSPESESTTTSSPASESTTIEEQGV 2132
PA +PA+ +SPA T++ P + + V
Sbjct: 2801 P--WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP--PGPPPPSLPLGGSV 2856
Query: 2133 SP 2134
+P
Sbjct: 2857 AP 2858
|
Length = 3151 |
| >gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1562 GSKVYYVNNSTTDIQKEIMQHGPVQAKFY 1590
G Y V + TDI KEIM +GPVQA F
Sbjct: 134 GKSAYSVPSDETDIMKEIMTNGPVQAAFT 162
|
Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236 |
| >gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-05
Identities = 58/242 (23%), Positives = 95/242 (39%), Gaps = 23/242 (9%)
Query: 1910 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSS 1969
E++S+++ SPE ES SS +T +S S T S + + L + +
Sbjct: 621 IETDSSSSDSPEDESLPPSSQSPGNTESSKESCASLRTPVCRSSVGSQNDLSKDRLLSPM 680
Query: 1970 PESESTTTSSPESESTTTSSLVSESTT---TSSPESESTTTISP-VSESTTTSSPVSEST 2025
E+E SP +S SL + + P + P +E + S+P +++
Sbjct: 681 RETE---LLSPLRDSEERYSLWVKIDLDLLSRIPGHPYKKGVPPKPAEKDSLSAPKKQTS 737
Query: 2026 TTIS--PESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASE 2083
T S S+ E+ + K ++ S S +SS S S S +S
Sbjct: 738 KTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSR 797
Query: 2084 ST------TTSSPASESTTTSS-------PASESTTTSS-PESESTTTSSPASESTTIEE 2129
+ + SSP S S+ E T++SS P S S+T SS S ST+
Sbjct: 798 NKEEEMLPSPSSPLSSSSPKPEHPSRKRPRRQEDTSSSSGPFSASSTKSSSKSSSTSKHR 857
Query: 2130 QG 2131
+
Sbjct: 858 KT 859
|
This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 2e-05
Identities = 41/177 (23%), Positives = 63/177 (35%), Gaps = 8/177 (4%)
Query: 1991 VSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNP 2050
V+ S TTS P S T S+ T S P ++ T + ++T ++ TTT
Sbjct: 172 VTTSKTTSWPTEVSHPTYP--SQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTT--S 227
Query: 2051 KSESTTTNNPASESITSSSPASESTTTS----SPASESTTTSSPASESTTTSSPASESTT 2106
+ T P S+ S SP +TTS + T + T++ + ST
Sbjct: 228 SNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTA 287
Query: 2107 TSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEFPNEDVFEHTFAEIPN 2163
T P ++ T P T + G SP + N + PN
Sbjct: 288 TPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNLVDCKELDPPKPN 344
|
Length = 408 |
| >gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210) | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-05
Identities = 48/245 (19%), Positives = 77/245 (31%), Gaps = 29/245 (11%)
Query: 1899 SPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPES-ESTTTSSPESESTTT 1957
SP E + ES S S+ + V + + E E PE ES
Sbjct: 332 SPSFEREKSEKSRHESDPKSRENSKPASIYGSVPDLIRHTPLEDVEEYEPLFPEDESEIA 391
Query: 1958 SSLVSESTTTSSPESESTTTSSPESESTTTSSLVSE--STTTSSPESESTTTISPVSEST 2015
+E ++ E + S E + +S + ST ++ P S T P E++
Sbjct: 392 VKPPTEESSRRPEEEKHRFPSEDVWEDSPSSLQDTATVSTPSNPPPRASET---PEQETS 448
Query: 2016 TTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASEST 2075
+SS VS +SE + A + S + P S+ + ++ E
Sbjct: 449 RSSSEVSLD----PHQSELKSEKKKARPEVSKQRFPSRDVWEDAPESQELVTTEETPEEV 504
Query: 2076 TTSSPASESTTT-SSPASESTTTSS-----------------PASESTTTSSPES-ESTT 2116
+SSP S P T+ PA + E+ S
Sbjct: 505 KSSSPGVTKPAIPSRPKKGKPTSEKRKPPPVPKKPKPQIPARPAKLQKQQAGEEANSSAF 564
Query: 2117 TSSPA 2121
P
Sbjct: 565 KPKPR 569
|
This is a family of proteins conserved in yeasts. The function is not known. The Schizosaccharomyces pombe member is SPBC18E5.07 and the Saccharomyces cerevisiae member is AIM21. Length = 671 |
| >gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210) | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-05
Identities = 58/267 (21%), Positives = 88/267 (32%), Gaps = 42/267 (15%)
Query: 1908 NNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTT 1967
N E+ +T S S E ++PE ++ SSP +S++ SS ES
Sbjct: 247 NKIVRETASTGSGLGTSPEVDGTPEEQVGYTAPEEYTSRLSSPAPDSSSFSSPSGESGLE 306
Query: 1968 SSPESESTTTS---SPESES-------TTTSSLVSESTTTSSPESESTTTISPVSESTTT 2017
E S + E + +S S P+S + + + S
Sbjct: 307 EREAEEPILASDEVAKEPAGESPAVSPSFEREKSEKSRHESDPKSRENSKPASIYGSVPD 366
Query: 2018 SSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPA-----SESITSSSPAS 2072
T E SE P ES+ SE + SP
Sbjct: 367 LI---RHTPLEDVEEYEPLFPEDESEIAV-KPPTEESSRRPEEEKHRFPSEDVWEDSP-- 420
Query: 2073 ESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGV 2132
S ++ T S+P++ P S T PE E++ +SS S E
Sbjct: 421 ------SSLQDTATVSTPSNP------PPRASET---PEQETSRSSSEVSLDPHQSEL-- 463
Query: 2133 SPHSEKLSANEDP--EEFPNEDVFEHT 2157
SEK A + + FP+ DV+E
Sbjct: 464 --KSEKKKARPEVSKQRFPSRDVWEDA 488
|
This is a family of proteins conserved in yeasts. The function is not known. The Schizosaccharomyces pombe member is SPBC18E5.07 and the Saccharomyces cerevisiae member is AIM21. Length = 671 |
| >gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210) | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-05
Identities = 47/200 (23%), Positives = 66/200 (33%), Gaps = 27/200 (13%)
Query: 1892 SENTTTNSPESESTTTNNPE-----SESTTTSSPESESTTTSSLVSESTTTSSPESESTT 1946
P ES+ E SE SP S T + ST ++ P S T
Sbjct: 387 ESEIAVKPPTEESSRRPEEEKHRFPSEDVWEDSPSSLQDTATV----STPSNPPPRASET 442
Query: 1947 TSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESEST- 2005
PE E++ +SS VS S +SE S+ S V E +PES+
Sbjct: 443 ---PEQETSRSSSEVSLDPHQSELKSEKKKARPEVSKQRFPSRDVWE----DAPESQELV 495
Query: 2006 TTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESI 2065
TT E ++S V++ P+ T+ PK + PA +
Sbjct: 496 TTEETPEEVKSSSPGVTKPAIPSRPKKGKPTSEKRKP-PPVPKKPKPQI-----PARPAK 549
Query: 2066 TSSSPASE----STTTSSPA 2081
A E S P
Sbjct: 550 LQKQQAGEEANSSAFKPKPR 569
|
This is a family of proteins conserved in yeasts. The function is not known. The Schizosaccharomyces pombe member is SPBC18E5.07 and the Saccharomyces cerevisiae member is AIM21. Length = 671 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 109 VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWD 145
++ T GH +T + + P G+ LA+GS D + +WD
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-05
Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 17/207 (8%)
Query: 1897 TNSPESESTTTNNPESE-STTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESEST 1955
T +S+ E + SS S +S + +T+ S T+ P+
Sbjct: 62 TEHESQQSSNNAGAEKNIDLSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQ---D 118
Query: 1956 TTSSLVSESTTTSSPESESTTTSSPESESTTTSSL------VSESTTTSSPESESTTTIS 2009
++ +S + T ++P E + +L V+ ++ + + + T +
Sbjct: 119 ISAPPISPTPTQAAPPQTPNGQQRIELPGNISDALSQQQGQVNAASQNAQGNTSTLPT-A 177
Query: 2010 PVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSS 2069
P + + + + V + T + T PA N +T PA+ S
Sbjct: 178 PATVAPSKGAKVPATAETHPTPPQKPATKKPAV------NHHKTATVAVPPATSGKPKSG 231
Query: 2070 PASESTTTSSPASESTTTSSPASESTT 2096
AS +S+PAS T S AS S T
Sbjct: 232 AASARALSSAPASHYTLQLSSASRSDT 258
|
Length = 327 |
| >gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 2e-05
Identities = 59/263 (22%), Positives = 102/263 (38%), Gaps = 14/263 (5%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESEST--TTSSLVSESTTTSSPESESTTTSS 1949
+E+ + PE +T ++ E E ES+ S E + PES T S
Sbjct: 170 NEDEVDSRPEGGDSTQDSESEEHWVGGGSEGESSHGDGSEFDDEGMQSDDPES----TRS 225
Query: 1950 PESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTIS 2009
S +S+ + + E +++T S ES+S S + S E
Sbjct: 226 ERGNSRMSSAGLKSKESKGEDEEQASTQDSGESQSVEYPSRKFFRKSRISEEDGRGELDD 285
Query: 2010 PVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSS 2069
S + S +E+ S + S E + N + +S +P+SES S
Sbjct: 286 --SNTMEVKSDSTENAGLSQSREHSRSESQ---EDSEENQSQEDSQEVQDPSSES---SQ 337
Query: 2070 PASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEE 2129
A + +S S+ S ++ ++ SE S E + + +SES + EE
Sbjct: 338 EADLPSQENSSESQEEVVSESRGDNPDNTTSHSEDQEDSESSEEDSLDTPSSSESQSTEE 397
Query: 2130 QGVSPHSEKLSANEDPEEFPNED 2152
Q S +E LS++E+ E ++
Sbjct: 398 QADSESNESLSSSEESPESTEDE 420
|
This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown. Length = 514 |
| >gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 2e-05
Identities = 29/142 (20%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 1893 ENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTT-TSSPESESTTTSSPE 1951
+N + ++ + + S + T SS ++ S+ SP ++ ++
Sbjct: 278 DNRALDIEKATGLKQIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQ- 336
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPV 2011
S +TT +S V+ S+ P S+ T + + ++ + +T+ + ST I+
Sbjct: 337 SATTTQASAVALSSAGVLP-SDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITST 395
Query: 2012 SESTTTSSPVS-ESTTTISPES 2032
+ TTS P + S +SP S
Sbjct: 396 ANGPTTSLPAAPASNIPVSPTS 417
|
Length = 421 |
| >gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295) | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-05
Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 9/187 (4%)
Query: 1944 STTTSSPESESTTTSSLVSESTTTSSPES----ESTTTSSPESESTTTSSLVSESTTTSS 1999
S + S SE ++S+ T + + +S +S E S
Sbjct: 11 SASVDSAASEEAVDIEHHTDSSPTDISRPRIVRQDSCSSRSRGRERHITSDDLEKMVLSI 70
Query: 2000 PESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTT--T 2057
E + ++ + +P S T P SEST T +P + +S STT
Sbjct: 71 KEKKDLEPLALPMPNLAPITPPSSEPTPAPPSSESTATRTPDPNQQALESTESTSTTSAD 130
Query: 2058 NNPASESITSSSPASESTTTSSPASESTTTS---SPASESTTTSSPASESTTTSSPESES 2114
N + +S T + +S+++T+SS A ST+ SP+ S++ S A + S +S
Sbjct: 131 CNDSEQSSTPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAE 190
Query: 2115 TTTSSPA 2121
T + A
Sbjct: 191 PTAAPQA 197
|
This family is conserved in fungi but the function is not known. Length = 509 |
| >gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 2e-05
Identities = 57/284 (20%), Positives = 91/284 (32%), Gaps = 25/284 (8%)
Query: 1873 TTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPES-----ESTTT 1927
T S++T V + S ++ T +P SE T + + + S + + T
Sbjct: 52 TVGALSKATKVWKSAVSSSDDSKTVPTPVSEPNITRSFQEPVSQESEVQDNTEQNQDTKG 111
Query: 1928 SSLVSESTTTSSPESESTTTSSP-ESESTTTSSLVSESTT-TSSPESESTTTS----SPE 1981
S SE S E ++ +TSS S T VS S+ T+S +T S
Sbjct: 112 SKTDSEEDDDDSEEEDNKSTSSKDGKGSKKTQPGVSTSSGSTTSGTDLNTKQSQTGLGAS 171
Query: 1982 SESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPA 2041
VS+S P P V +SP
Sbjct: 172 GSHAQQDPAVSQSGVVGVPGLGVPGVGVPGGGGAGALPGVGVGRAGVSPGVGVGGLGGVP 231
Query: 2042 SESTTTNNPKSESTTTNNPASESITSS--------------SPASESTTTSSPASESTTT 2087
+N E T ++ + S +S STT S ++ +TT
Sbjct: 232 GVGILASNTSREGQTQDDQERDGDGRVIEPGVGLPGVRVGDSTSSPSTTRPSGSTTTTTP 291
Query: 2088 SSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQG 2131
+S + +S + T S +S S SP + + G
Sbjct: 292 ASSGPSAPGGPGSSSRNAVTRSTDSISGPIPSPGAPRAITGQMG 335
|
This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in cattle. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies. Length = 727 |
| >gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (117), Expect = 2e-05
Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 8/168 (4%)
Query: 1986 TTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASEST 2045
TT S+ +E ++ + T ++ T+ S +T + E T A +
Sbjct: 24 TTQSVKAEKIQSTKVDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKLEKAPNTN 83
Query: 2046 TTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASEST 2105
S+ + P E S + ++ + +T +++P ++ TT P S +T
Sbjct: 84 EEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTT---PPSTNT 140
Query: 2106 TTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSA--NEDPEEFPNE 2151
++S T SP + + ++P E L A + EF +
Sbjct: 141 PQPMQSTKSDTPQSPTIKQAQTD---MTPKYEDLRAYYTKPSFEFEKQ 185
|
Length = 356 |
| >gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 2e-05
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 2344 LYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403
L SC G + H V ++G+ + + PYW+ NS+ + WGE+G ++ GVN C +
Sbjct: 278 LTSCIGE---QLNHGVLLVGYNMTGE-VPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTG 333
|
Length = 348 |
| >gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (112), Expect = 3e-05
Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 10/159 (6%)
Query: 1987 TSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTT 2046
TS + + S ++++ T T + + S + S P + +TT++ S TT++ S +TT
Sbjct: 20 TSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTT 79
Query: 2047 TNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTT 2106
T T+T + T+S+ ++ + TT A T T + TS+ + + T
Sbjct: 80 T------VTSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTG----TSTGVTSNVT 129
Query: 2107 TSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDP 2145
T S + S TT + + + + E P
Sbjct: 130 TRSSSTTSATTRITNATTLAPTLSSKGTSNATKTTAELP 168
|
Length = 234 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1167 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
+L GH PV S+ S D +A+GS D T+K+W
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 1114 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152
G ++L H VT V F P + + S DG V+ WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 1204 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1242
G ++L H VT V F P + + S DG V+ WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 1388 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G ++L H VT V F P + + S DG V+ WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWS 390
+ L+GH G + + PDG +AS D + +W
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle | Back alignment and domain information |
|---|
Score = 49.1 bits (116), Expect = 3e-05
Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 26/243 (10%)
Query: 1914 STTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESE 1973
+ E++S+ S T T++ + S + P ++ S + ST T P +
Sbjct: 82 AAQAGEEEAKSSEEESDSEGETPTAATLTTSPAQAKPLGKN---SQVRPASTVTPGPSGK 138
Query: 1974 STTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESE 2033
P+ + + + + SS E ES + +S + ++ P
Sbjct: 139 GANLPCPQKAGSAAVQVGKQEDSESSSEEESDSDGPGAPAQAKSSGKLLQARPASGPAKG 198
Query: 2034 STTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASE 2093
+ P + K +S ++ +S+S + A + T +SP
Sbjct: 199 PPQKAGPVATQVKAERGKEDSESSEE-SSDSEEEAPAAMTAAQAKPALKTPQTKASPRKG 257
Query: 2094 STTTSSPASES---TTTSSP-----ESESTTTSSPA--------------SESTTIEEQG 2131
+ T + A T +P + SSPA SE + EE+G
Sbjct: 258 TPITPTSAKVPPVRVGTPAPRKAGAVTSPACASSPALARGTQRPDEDSSSSEESESEEEG 317
Query: 2132 VSP 2134
+P
Sbjct: 318 TAP 320
|
Length = 519 |
| >gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 2022 SESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPA 2081
S + S S +T +++ SE TT+ + T+SS S TTT+S +
Sbjct: 38 SGDDDEFIDDEMDDEYSGSGSGATPSDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTS 97
Query: 2082 SESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPA-SESTTIEEQGVSPHSEKLS 2140
++++ T S +TT+ SE+ T + + ST T + S + T + + E L+
Sbjct: 98 TKTSPTVSTTVTTTTS---PSETDTEEATTTVSTETPTEGGSSAATDPSKNLLERKEVLA 154
Query: 2141 A 2141
A
Sbjct: 155 A 155
|
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors. Length = 207 |
| >gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 3e-05
Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)
Query: 1972 SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPE 2031
+ +P S T +S++ S SP P S +T +++ S +S
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAV------IPSSVTTQSATTTQASAVALS-- 349
Query: 2032 SESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPA 2091
+ S + T P +E + + ++ + T++ A+ TT+ A
Sbjct: 350 -SAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITST--ANGPTTSLPAA 406
Query: 2092 SESTTTSSPAS 2102
S SP S
Sbjct: 407 PASNIPVSPTS 417
|
Length = 421 |
| >gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-05
Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 22/233 (9%)
Query: 1861 ISVIDNYSEII---------FTTNNNSE--STVVMSTLNSLLSENTTTNSPESESTTTNN 1909
++ + + II F N + T+++ S++ +S
Sbjct: 98 LTCVSAFRHIISLLRKNLDAFFDNGDVRYIRTLLLMLYGSIMELRNAWSSLGPPLQHRKR 157
Query: 1910 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSS 1969
++ +S + + L S T + S++ S + +T S + TT
Sbjct: 158 DAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESPSNLQVTTDVP 217
Query: 1970 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTIS 2029
P + T+ S S+ S++S T S ES +T T+ SS ++ +
Sbjct: 218 PPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRST-------PTSGSSSINPVSGLDE 270
Query: 2030 PESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPAS 2082
E + T T+ + +E + S AS ++ +P+
Sbjct: 271 AEEDRIDEQLFLKLRTATDM----ALRVLPQLTEQFSKSLIASTTSRNITPSL 319
|
SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 3e-05
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 1897 TNSPESESTTTNNPESESTTTSSPESESTTTSSLVS-ESTTTSSPESESTTTSSPESEST 1955
+P S ++T + S TT S +S ST + S + SP + + SP + S
Sbjct: 563 AGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPST-SP 621
Query: 1956 TTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTT 2007
S L S STT SSPES S+ + + S + ++T SS S +T
Sbjct: 622 PASHLGSPSTTPSSPESSIKVASTE---TASPESSIKVASTESSVSMVSMST 670
|
Length = 670 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-05
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 2021 VSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSP 2080
S+S ++ + + A + ST S E+ T +P
Sbjct: 6 FSKSAVALTLALLTASNPKLAQAEEIVTTTPATSTEAEQTTP---VESDATEEADNTETP 62
Query: 2081 ASESTTTSSPASESTT-TSSPASESTTTSSPESESTTTSSPASESTT-IEEQGV 2132
+ +T +P+S T TS P SE+T T++ SE+ T + A+E++ +E Q V
Sbjct: 63 VAATTAAEAPSSSETAETSDPTSEATDTTT--SEARTVTPAATETSKPVEGQTV 114
|
Length = 814 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-05
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPV 2011
S+S +L + + ++ + ST S E+ T +PV
Sbjct: 7 SKSAVALTLALLTASNPKLAQAEEIVTTTPATSTEAEQTT---PVESDATEEADNTETPV 63
Query: 2012 SESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTT 2056
+ +T +P S S T + + S T + SE+ T +E++
Sbjct: 64 AATTAAEAP-SSSETAETSDPTSEATDTTTSEARTVTPAATETSK 107
|
Length = 814 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 437 GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWD 476
G+ ++ +KGH+ V S G LL ASGSDD TV+VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLL-ASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|217503 pfam03344, Daxx, Daxx Family | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 4e-05
Identities = 49/249 (19%), Positives = 73/249 (29%), Gaps = 18/249 (7%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE 1951
SE S E + + E SE S + S + P
Sbjct: 482 SEEEMEGSSEGDG----DGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQEEPL 537
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPV 2011
+ + V E + ES +S E E T S++ P PV
Sbjct: 538 QPESMDAESVGEESDEELLAEESPLSSHTELEGVATPVETKISSSRKLPP-------PPV 590
Query: 2012 SESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNN-PASESITSSSP 2070
S S S STT + + + +P E + + + P
Sbjct: 591 STSLENDSATVTSTT----RNGNVSPHTPQDEQPPSGRKRKRKEEVESEPLGNQYLRHHN 646
Query: 2071 ASESTTTSSPASESTTTSSPASESTTTSSPASESTTTS--SPESESTTTSSPASESTTIE 2128
SE +P T+ S A ST +P+ E T+S +P + E
Sbjct: 647 GSEKDGLPAPMDPVTSCSPVADSSTRVDTPSHELVTSSPQTPGDPPKKNKVNVATQCDPE 706
Query: 2129 EQGVSPHSE 2137
E V SE
Sbjct: 707 EVIVLSDSE 715
|
The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715 |
| >gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 1902 SESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLV 1961
S +T +++ +SE TTS+ + TTTSS S TTT+S ++++ T S +TT+
Sbjct: 58 SGATPSDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSP--- 114
Query: 1962 SESTTTSSPESESTTTSS-PESESTTTSS 1989
SE+ T + + ST T + S + T S
Sbjct: 115 SETDTEEATTTVSTETPTEGGSSAATDPS 143
|
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors. Length = 207 |
| >gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 1912 SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPE 1971
S +T + +SE TTS+ + TTTSS S TTT+S ++++ T S +TT SP
Sbjct: 58 SGATPSDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTT--SP- 114
Query: 1972 SESTTTSSPESESTTTSSLVSESTTTSSPES 2002
SE+ T + + ST T + S T ++
Sbjct: 115 SETDTEEATTTVSTETPTEGGSSAATDPSKN 145
|
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors. Length = 207 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 4e-05
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 1907 TNNPESESTTTSSPESESTTTSSLVSESTTTS---SPESESTTTSSPESESTTTSSLVSE 1963
NP S ++T + + S TT S S ST + SP + S P + S S
Sbjct: 563 AGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPA-GHLGSPPATPSKIVSP---- 617
Query: 1964 STTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSE 2023
+TS P S S STT SS S S+ + ++I V+ + ++ S VS
Sbjct: 618 --STSPPAS------HLGSPSTTPSSPESSIKVASTETASPESSIK-VASTESSVSMVSM 668
Query: 2024 ST 2025
ST
Sbjct: 669 ST 670
|
Length = 670 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 4e-05
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 1932 SESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLV 1991
+ ST T S S +TT SS + S + SP + + SP + S S L
Sbjct: 569 TNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPST-SPPASHLG 627
Query: 1992 SESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESEST 2035
S STT SSPES + + S +S V+ + +++S S ST
Sbjct: 628 SPSTTPSSPESSIKVASTE-TASPESSIKVASTESSVSMVSMST 670
|
Length = 670 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 4e-05
Identities = 54/233 (23%), Positives = 88/233 (37%), Gaps = 68/233 (29%)
Query: 415 TDGCHIFTCSTDQTLAVWDLEKGQRIK--------------KMKGHSTFV-----NSCDP 455
D C I CS+ W++E G I K+KGH++ + N C
Sbjct: 29 IDSCGI-ACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPC-- 85
Query: 456 VRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKM 515
++ASGS+D T++VW+ +++V Q C+L
Sbjct: 86 ---FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ-----------CIL---------- 121
Query: 516 WDLRTNSVVQKLRGHSDTVTGLSLSPDGSYIL-SNAMDNTVRIWDIRPYVPGERCVKVMS 574
+GH ++ + +P YI+ S+ D+ V IWDI E+
Sbjct: 122 ------------KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE----NEK-----R 160
Query: 575 GHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVN 627
Q N K L W++ G ++ K ++I D + IA H+G N
Sbjct: 161 AFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN 213
|
Length = 568 |
| >gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt) | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 4e-05
Identities = 54/279 (19%), Positives = 80/279 (28%), Gaps = 18/279 (6%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE 1951
E+ + P S PE ++ S SS E + + E S E
Sbjct: 234 HESEVGDKPAETSKEEETPEVKAEDLQPAVDGSVEHSSSEIEEHQGETEKEEGIPESHAE 293
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPV 2011
+V +S P S E E L + + ES + + V
Sbjct: 294 DLQPAVDDIVEHP--SSEPFVAEEEVSETEKEENNPEVLAEDLQDAADGESGVSDQPAQV 351
Query: 2012 SESTTT------SSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTT---NNPA- 2061
E + E S + S P+ E + K S T +NP
Sbjct: 352 VEERESEIEEHQGETEKEEGIPESHAEDDEIASDPSIEHFSAEVGKEVSETEKEESNPEV 411
Query: 2062 -----SESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTT 2116
++ ES PA S SP E+ PA + S + E
Sbjct: 412 KAEDLQPAVDGDVAHHESEVGDKPAETSKEEESPEIEA-EDGEPAKDGGIEESHQEEDEI 470
Query: 2117 TSSPASESTTIEEQGVSPHSEKLSANEDPEEFPNEDVFE 2155
S P+ E T E + + E E+V E
Sbjct: 471 VSEPSKEEFTAEVKAEDLQPAVDGSVEHSSSEVGEEVSE 509
|
This entry represents 77 residues of an 80 amino acid (240 nucleotide) tandem repeat, found in a variable number of copies in an immunodominant outer membrane protein of Ehrlichia chaffeensis, a tick-borne obligate intracellular pathogen. Length = 707 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-05
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 1114 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152
G+ K+L H VT V F P Y + S DG +K WD
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-05
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 1204 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1242
G+ K+L H VT V F P Y + S DG +K WD
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-05
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 1388 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G+ K+L H VT V F P Y + S DG +K WD
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 6e-05
Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 11/189 (5%)
Query: 1981 ESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSP 2040
+ +L+ T T++ + + TT S + + P TT+ P
Sbjct: 395 ANPVADAKTLIITRTATNATTTTHKVVFHKAPD-TTKSVIFVYTLVHVEP---HKTTAVP 450
Query: 2041 ASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSP 2100
+ S + +T +P S + T ++ S +SP S +T+ + A+ T +
Sbjct: 451 TTPSLPPA-STGPTVSTADPTSGTPTGTTS-STLPEDTSPTSRTTSATPNATSPTPAVTT 508
Query: 2101 ASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDP-----EEFPNEDVFE 2155
+ ++ T+ S++ +SP + SP + S EE P +
Sbjct: 509 PNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNT 568
Query: 2156 HTFAEIPNI 2164
P++
Sbjct: 569 PVVTSAPSV 577
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 6e-05
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
Query: 2045 TTTNNPKSESTTTNNPASE-SITSSSPASESTTTSSP----ASESTTTSSPASESTTTSS 2099
T K ++T PA++ + TS A T + A ++ S TTT
Sbjct: 3 ETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK 62
Query: 2100 PASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEFPNEDVFE 2155
+ T S + ES + E+ + E S K ++ + F +E ++
Sbjct: 63 VTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKKLFASEKIYS 118
|
Length = 295 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 44.9 bits (105), Expect = 6e-05
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 2011 VSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSP 2070
V E+ S + +TTT +P + +TTT++ + TTT +TTT + + T+ +P
Sbjct: 35 VVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTT--TTKTTTTTTTTTTTTTTTEAP 92
Query: 2071 ASESTTTSSPASESTTTSSPASESTTTSSPAS 2102
+ +TT+ +P +T T +P+S S S
Sbjct: 93 SKNTTTSEAPT--TTDTRAPSSIREIDGSLGS 122
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 44.9 bits (105), Expect = 6e-05
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 2031 ESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSP 2090
+ + +TTT +TTT + + +++ +TTT++ + +TTT +P
Sbjct: 33 AAVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAP 92
Query: 2091 ASESTTTSSPASESTTTSSPESESTTTSSPAS 2122
+ +TT+ +P +T T +P S S S
Sbjct: 93 SKNTTTSEAPT--TTDTRAPSSIREIDGSLGS 122
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-05
Identities = 45/225 (20%), Positives = 73/225 (32%), Gaps = 21/225 (9%)
Query: 1930 LVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSS 1989
LVS+S ++ + + E T T + +T + S S
Sbjct: 43 LVSDSAELAAVTVVAGAAACDRFEPPTGPP--PGPGTEAPANESRSTPTWSLSTLAPASP 100
Query: 1990 LVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNN 2049
S T P S +P S SP + + + P + + + +
Sbjct: 101 AREGSPTPPGPSSPDPPPPTPPPASPP-PSPAPDLSEMLRPVGSPGPPPAASPPAAGASP 159
Query: 2050 PKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTT--- 2106
S +S A SSP + SSP +E ++ PA+ S
Sbjct: 160 AAVASDAA--------SSRQAALPL---SSPEETARAPSSPPAEPPPSTPPAAASPRPPR 208
Query: 2107 TSSPESESTTTSSPASESTTIEEQGVSP----HSEKLSANEDPEE 2147
SSP S S ++ +PA + ++ G S SE PE
Sbjct: 209 RSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPEN 253
|
Length = 1352 |
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 7e-05
Identities = 34/166 (20%), Positives = 67/166 (40%), Gaps = 11/166 (6%)
Query: 1980 PESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSS 2039
P+ E+ T S E + SS ++T +++ + +S+S+ + +PE E +
Sbjct: 202 PKEENHTLSVTDKEKSEASSK-GLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGK 260
Query: 2040 PASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSS 2099
S + NN S+ S E S S +++S+ S+ TT++S
Sbjct: 261 DHHHSHNHQHHSIGI---NNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNS 317
Query: 2100 PASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDP 2145
++ + + S S+S S+ ++ SP S + P
Sbjct: 318 SSAAAGSIGSKSSKSAKHSNRNKSNS-------SPKSHSSANGSVP 356
|
This entry is a highly conserved protein present in eukaryotes. Length = 680 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 7e-05
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 1984 STTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASE 2043
+ + L ++ + ST ++T S +E +TT + S
Sbjct: 19 TASNPKLAQAEEIVTTTPATSTEA----EQTTPVESDATEEADNTETPVAATTAAEAPSS 74
Query: 2044 STTTNNPKSESTTTNNPASESITSSSPASESTT 2076
S T S T+ SE+ T + A+E++
Sbjct: 75 SETAETSDPTSEATDTTTSEARTVTPAATETSK 107
|
Length = 814 |
| >gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612 | Back alignment and domain information |
|---|
Score = 47.7 bits (112), Expect = 7e-05
Identities = 52/283 (18%), Positives = 101/283 (35%), Gaps = 17/283 (6%)
Query: 1911 ESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSP 1970
+++ +T +P E + ++ + +PE + T T++P + + + +
Sbjct: 163 KTKKASTPAPVEEEIVVKKVANDRSAAPAPEPK-TPTNTPAEPAEQVQEITGKKNKKNKK 221
Query: 1971 ESESTTTSSPESESTTTSS---LVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTT 2027
+SES T++P S + E ++P+ + SES + S T
Sbjct: 222 KSESEATAAPASVEQVVEQPKVVTEEPHQQAAPQEKKNKKNKRKSESENVPAA---SETP 278
Query: 2028 ISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPA---SES 2084
+ P E T+ PASE+ N + + + E + + +P S+ T
Sbjct: 279 VEPVVE---TTPPASENQKKNKKDKKKSESEKVVEEPVQAEAPKSKKPTADDNMDFLDFV 335
Query: 2085 TTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANED 2144
T P E T + E + E+ +++P + + + SE E
Sbjct: 336 TAKEEPKDEPAETPAAPVEEVVENVVENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQ 395
Query: 2145 PEEF----PNEDVFEHTFAEIPNIDHSNQTDEAIPETFDAREE 2183
P E P + N+ D+ E+ A EE
Sbjct: 396 PVESAPAPPQVEQVVEKTPPASENKKKNKKDKKKSESEKAVEE 438
|
This family includes several uncharacterized proteins from Caenorhabditis elegans. Length = 517 |
| >gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612 | Back alignment and domain information |
|---|
Score = 47.4 bits (111), Expect = 8e-05
Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 25/233 (10%)
Query: 1908 NNPESESTTTSSPESESTTTSS---LVSESTTTSSPESESTTTSSPESES----TTTSSL 1960
N +SES T++P S + E ++P+ + + +SES + +
Sbjct: 219 NKKKSESEATAAPASVEQVVEQPKVVTEEPHQQAAPQEKKNKKNKRKSESENVPAASETP 278
Query: 1961 VSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESES-------------TTT 2007
V T+ P SE+ + + + + + +V E +P+S+ T
Sbjct: 279 VEPVVETTPPASENQKKNKKDKKKSESEKVVEEPVQAEAPKSKKPTADDNMDFLDFVTAK 338
Query: 2008 ISPVSE-STTTSSPVSESTTTISPESESTTTSSPASESTTTNNP---KSESTTTNNPASE 2063
P E + T ++PV E + +T+ PA+E+ N KSES E
Sbjct: 339 EEPKDEPAETPAAPVEEVVENVVENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVE 398
Query: 2064 SITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTT 2116
S + + + PASE+ + + + S A E ++P S+ T
Sbjct: 399 SAPAPPQVEQVVEKTPPASENKKKNKK-DKKKSESEKAVEEPVQAAPSSKKPT 450
|
This family includes several uncharacterized proteins from Caenorhabditis elegans. Length = 517 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-05
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 613 RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
++ L GH G V V F P ++ S S D T+ +
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37
|
Length = 39 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 47.5 bits (112), Expect = 1e-04
Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 13/223 (5%)
Query: 1840 SVSPYITNNLLISMLAATAVAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNS 1899
SP NN ++ + ++ + ++ S+ + S+ +S N+T+ +
Sbjct: 559 EESP--VNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTT 616
Query: 1900 PESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTS--SPESESTTT 1957
P T+ + E+ T +P STT +T SP TTS S S+T+
Sbjct: 617 P--LLTSAHPTGGENITEETPSVPSTT-------HVSTLSPGPGPGTTSQVSGPGNSSTS 667
Query: 1958 SSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTT 2017
T P +T+ S+P + T ++ S +S E++ + S S T
Sbjct: 668 RYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHT 727
Query: 2018 SSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNP 2060
+ +T + +TSS T +P + P
Sbjct: 728 NEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVP 770
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 1e-04
Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 14/242 (5%)
Query: 1895 TTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESES 1954
+T E ++ T PE + S + S S SE E ES+ + S E
Sbjct: 79 STKRQREKPASDTEEPERVTAKKSKTQELSRPNSP--SEGEGEGEGEGESSDSRSVNEEG 136
Query: 1955 TTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSES 2014
++ + + +SSP + S ++ES + SS + P S + P +
Sbjct: 137 SSDPKDIDQDNRSSSP----SIPSPQDNESDSDSSAQQQLLQPQGPPSIQ---VPPGAAL 189
Query: 2015 TTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASES 2074
++ P + S + P+ S + PA + + S + +P + + S P +
Sbjct: 190 APSAPPPTPSAQAVPPQG-SPIAAQPAPQPQQPSPLSLISAPSLHP--QRLPSPHPPLQP 246
Query: 2075 TTTS--SPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGV 2132
T S SP + ++ P S P + + +++ P +
Sbjct: 247 QTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPP 306
Query: 2133 SP 2134
P
Sbjct: 307 LP 308
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-04
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 18/151 (11%)
Query: 1966 TTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTT-------ISPVSESTTTS 2018
TT S E+++ T T SL + T I + T TS
Sbjct: 709 TTLSSEAKNPDTVKIGQALTVYGSL---EVFPAGENWGFIPTTKRVKVRIMDPASGTGTS 765
Query: 2019 SPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTS 2078
S + T P+S T T + S S +N TT+ + + T++
Sbjct: 766 ITTSGTFTAEVPQSP-TKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTT----TSSP 820
Query: 2079 SPASESTTTSSPASESTTTSSPASESTTTSS 2109
SP +++T+ + ++ +TTT+SP+ TTT
Sbjct: 821 SP-TQTTSPTQTSTSTTTTTSPS--QTTTGG 848
|
Length = 872 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 612 TRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
+ + L GH G V V F P + S S D TI L
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKL 38
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|115650 pfam07010, Endomucin, Endomucin | Back alignment and domain information |
|---|
Score = 45.9 bits (108), Expect = 1e-04
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 22/182 (12%)
Query: 1958 SSLVSESTTTSSPESESTTTSSPESESTTTSSLVS-----ESTTTSSPESESTTTISPVS 2012
S+ + S + S T+S S TT + VS + TT + P+ +T+ + S
Sbjct: 14 SNSLCNSEGVKEAANNSLVTTSTTKASITTPNTVSLKNVNKPTTGTPPKGTTTSELLKTS 73
Query: 2013 ESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPAS 2072
+T +S TT E ++TTT +ES+T+ + T +N A ++ SS +
Sbjct: 74 LMSTATSL-----TTPKHELKTTTTGVRKNESSTSKVTVTNVTLSN--AVSTLQSSQNKT 126
Query: 2073 ES-----TTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESE-----STTTSSPAS 2122
E+ TT SP S +SP TT++S + TT+ S ++E ST++++P+
Sbjct: 127 ENQSSIRTTEISPTSVLQPDASPKKTGTTSASLTTAETTSQSQDTEDGKIASTSSTTPSY 186
Query: 2123 ES 2124
S
Sbjct: 187 SS 188
|
This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells. Length = 259 |
| >gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 1e-04
Identities = 60/260 (23%), Positives = 98/260 (37%), Gaps = 21/260 (8%)
Query: 1893 ENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE- 1951
E ++ PES + N S S ES+ +++T S ES+S S +
Sbjct: 213 EGMQSDDPESTRSERGNSRMSSAGLKSKESKGEDEE----QASTQDSGESQSVEYPSRKF 268
Query: 1952 ------SESTTTSSLVSESTT-TSSPESESTTTSSPESESTTTSSLVSESTTTSSPESES 2004
SE L +T S +E+ S S + S +S S E +S
Sbjct: 269 FRKSRISEEDGRGELDDSNTMEVKSDSTENAGLSQSREHSRSESQ--EDSEENQSQE-DS 325
Query: 2005 TTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASES 2064
P SES S + S ES+ S ++ SE + + E
Sbjct: 326 QEVQDPSSES---SQEADLPSQENSSESQEEVVSESRGDNPDNTTSHSEDQEDSESSEED 382
Query: 2065 ITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASES 2124
+ +SES +T A + S +SE + S+ S++ +S S +T S + ES
Sbjct: 383 SLDTPSSSESQSTEEQADSESNESLSSSEESPESTEDENSSSQEGLQSHSASTESRSQES 442
Query: 2125 TTIEEQGVSPHSEKLSANED 2144
+ ++ S E S ++D
Sbjct: 443 QSEQD---SRSEEDDSDSQD 459
|
This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown. Length = 514 |
| >gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295) | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-04
Identities = 46/232 (19%), Positives = 85/232 (36%), Gaps = 16/232 (6%)
Query: 1929 SLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSP---ESEST 1985
+L + +P S T + P SEST T + + +EST+T+S +SE +
Sbjct: 80 ALPMPNLAPITPPSSEPTPAPPSSESTATR--TPDPNQQALESTESTSTTSADCNDSEQS 137
Query: 1986 TTSSLVSESTTTSSPESESTTTI----SPVSESTTTSSPVSESTTTI-SPESESTTTSSP 2040
+T +L S T+TSS + +T++ SP S++ S + + +E T
Sbjct: 138 STPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAAPQA 197
Query: 2041 ASESTTTNNPK-----SESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASEST 2095
E S + + ++S P S P S +S
Sbjct: 198 KPELPKKKQAMFTLGGSSGDDDEDSFEDRMSSQDPKRSSLPKPKPKMFQLGGSDELGKSL 257
Query: 2096 TTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEE 2147
+ + T + + + T S+ + ++ SA ED ++
Sbjct: 258 PSLMSPRKKTASFKEQVVTRTFPERTSDDDEDAIETEEDDVDE-SAIEDDDD 308
|
This family is conserved in fungi but the function is not known. Length = 509 |
| >gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-04
Identities = 42/247 (17%), Positives = 86/247 (34%), Gaps = 9/247 (3%)
Query: 1915 TTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESES 1974
T P S S T S+ + +T + S S +S + ++ S + ++
Sbjct: 1 TEERPPISRSGTGISMTHDKSTRPNDRSMSNDSSLCGLNQASDANGNEYSPNNKVSKKDT 60
Query: 1975 TTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESES 2034
+ ++ S + + + + ++ + S
Sbjct: 61 FSDQLHDALSKEFTLERERDRLQLNKRKYQAIRLQTSTPIVEIFKNNKDAVDPPNHTRSS 120
Query: 2035 TTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTS---SPASESTTTSSPA 2091
S A+ T + S + N P + + P S + S T +S P+
Sbjct: 121 GNNLSNANVKTLSAPVGEHSRSNNPPNLDQNLDTEPESSISQWGELQLNPSGKTLSSQPS 180
Query: 2092 SESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEFPNE 2151
+ T+ + P SES + P T+ +SP + + ++ + +E+ S N P +P+
Sbjct: 181 RKPTSEN-PKSESDNSKLP----TSVNSPLPDKSLLKRTLSNFWAERNSYNWKPLVYPSC 235
Query: 2152 DVFEHTF 2158
EH F
Sbjct: 236 PS-EHIF 241
|
Length = 612 |
| >gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-04
Identities = 52/246 (21%), Positives = 92/246 (37%), Gaps = 17/246 (6%)
Query: 1911 ESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSP 1970
E +S+ + E + S + + E++S+++ SPE ES SS +T +S
Sbjct: 593 EPKSSVPPAAEKRKYKSPSKIV-PKSREFIETDSSSSDSPEDESLPPSSQSPGNTESSKE 651
Query: 1971 ESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTI-- 2028
S T S + + L + + E+E +SP+ +S S + +
Sbjct: 652 SCASLRTPVCRSSVGSQNDLSKDRLLSPMRETE---LLSPLRDSEERYSLWVKIDLDLLS 708
Query: 2029 -SPESESTTTSSPA-SESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTT 2086
P P +E + + PK +++ T S +S+ E+
Sbjct: 709 RIPGHPYKKGVPPKPAEKDSLSAPKKQTSKT--------ASEKSSSKGKRKHKNDEEADK 760
Query: 2087 TSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPE 2146
S SS S S+++S S S S +S + EE SP S S++ PE
Sbjct: 761 IESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSRNKE-EEMLPSPSSPLSSSSPKPE 819
Query: 2147 EFPNED 2152
+
Sbjct: 820 HPSRKR 825
|
This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154 |
| >gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (105), Expect = 2e-04
Identities = 30/148 (20%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 1873 TTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVS 1932
T + + + T S + +TN + +TT+ + TTT+ +T ++ V+
Sbjct: 31 TASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTS----APITTTAI----LSTNTTTVT 82
Query: 1933 ESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVS 1992
+ TT +P ++ S+ + T+ ++ + + + T+ + S STT+++
Sbjct: 83 STGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRI 142
Query: 1993 ESTTTSSPESESTTTISPVSESTTTSSP 2020
+ TT +P S T + + TT P
Sbjct: 143 TNATTLAPTLSSKGTSN--ATKTTAELP 168
|
Length = 234 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-04
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 354 PIMLLEGHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGE------CENIGVMSGHTG 406
PI+L G G I ++P D Q + ++ D I W + E + I + GHT
Sbjct: 69 PILL--GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK 126
Query: 407 AVMDLKFSTDGCHIF-TCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIAS 465
V + F ++ + D + VWD+E+G+ ++ +K HS + S + G LL +
Sbjct: 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLL-CT 185
Query: 466 GSDDCTVKVWDPRKKN--QAVSMNNTYQVTSVAFNDTAECVLTGGIDN----DIKMWDLR 519
S D + + DPR +V + + + + + ++T G I +WD R
Sbjct: 186 TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245
|
Length = 493 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWD 476
G+ +K +KGH+ V S G+ L ASGSDD T+K+WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYL-ASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|115650 pfam07010, Endomucin, Endomucin | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 2e-04
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 1873 TTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVS 1932
TT + T +MST SL T TTT ++TS + T S+ VS
Sbjct: 64 TTTSELLKTSLMSTATSL------TTPKHELKTTTTGVRKNESSTSKVTVTNVTLSNAVS 117
Query: 1933 ESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVS 1992
T S ++++ SS + + +S++ + + S + ++ E+ S + +
Sbjct: 118 ---TLQSSQNKTENQSSIRTTEISPTSVLQPDASPKKTGTTSASLTTAETTSQSQDTEDG 174
Query: 1993 ESTTTSSPESESTTTISPV 2011
+ +TSS ++ I PV
Sbjct: 175 KIASTSSTTPSYSSIILPV 193
|
This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells. Length = 259 |
| >gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160 | Back alignment and domain information |
|---|
Score = 46.7 bits (110), Expect = 2e-04
Identities = 61/250 (24%), Positives = 95/250 (38%), Gaps = 46/250 (18%)
Query: 1850 LISMLAATAVAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNN 1909
LI+M++A AI S + N+S S S NS S N+TT+S + +TTT+N
Sbjct: 87 LIAMISANIQAIQ-----SGSGSASGNSSSSANSTSNSNSTTSNNSTTSS--NSTTTTSN 139
Query: 1910 PESESTTTSSPESESTTTSSLVSESTTTSSPES--------------ESTTTSSPESEST 1955
S S +TSS + + SL+ S + S+P
Sbjct: 140 STSSSNSTSSGLTSGASVVSLIDTCAWVYQDSSVGIAYLMVSILALFYGQSVSAPPYADL 199
Query: 1956 TTSSLVSESTTTSSPES-----------------ESTTTSSPESESTTTSSLVSESTTTS 1998
+L + + P+S T + + + +TT+
Sbjct: 200 GIPALPANCSGAGVPQSVQIKAAIAYINITINFINLTGQQFEDLQGPVATDCGCPNTTSV 259
Query: 1999 SPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTN 2058
+P I E+ S + ST+ S ST+ S+ S STTT N STT+
Sbjct: 260 APLVAEWEAILAALEAFANGSASANSTSN----SNSTSNSTTNSNSTTTTN----STTST 311
Query: 2059 NPASESITSS 2068
N S S +S+
Sbjct: 312 NSTSSSNSST 321
|
This family consists of several special lobe-specific silk protein SSP160 sequences which appear to be specific to Chironomus (Midge) species. Length = 758 |
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-04
Identities = 50/225 (22%), Positives = 78/225 (34%), Gaps = 18/225 (8%)
Query: 1928 SSLVSESTTTSSPESESTTTSSPES---ESTTTSSLVSESTTTSSPESESTTTSSPESES 1984
+ +E ES +S +S + + + + E + E T
Sbjct: 532 PAGAAEGNNVDMGRVESIHSSDQQSIIKQGSEDTDVDMEEAISEQEEKHEITIVDCAEPV 591
Query: 1985 TTTSSLVSESTTTS----SPESESTTTISPVSESTTTSSP-----VSESTTTISPESEST 2035
T + + T P E S VS+ T SP + S ES +
Sbjct: 592 RNTQNSLQIDTLDHESSEQPLEEKNALHSSVSKLNTEESPSKMVEIRPSCQDSVSESGVS 651
Query: 2036 TTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASEST 2095
T S A ES N+ ++E N AS S S P S SP + + +S
Sbjct: 652 TGVSVADES---NDSENELV---NCASPSSLSIVPVEVSPVLKSPTLSVSPRIRNSRKSL 705
Query: 2096 TTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLS 2140
TSS + S S ES+ T + S + +++ S S + S
Sbjct: 706 RTSSMLTASQKDSEDESKLTPEDAEPSFAKSMKNNSSSALSTQKS 750
|
Length = 1320 |
| >gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE 1951
S T ++ +SE TT+ + TTTSS S TTT+S ++++ T S +TT+ S E
Sbjct: 58 SGATPSDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPS-E 116
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESEST 1985
+++ ++ VS T T S +T S E
Sbjct: 117 TDTEEATTTVSTETPTEGGSSAATDPSKNLLERK 150
|
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors. Length = 207 |
| >gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 1992 SESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPK 2051
S +T + +SE TT + + TTTSS S TTT S ++++ T S +TT+ P
Sbjct: 58 SGATPSDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTS--P- 114
Query: 2052 SESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASEST 2095
SE+ T + S T T +S +T S E
Sbjct: 115 SETDTEEATTT--------VSTETPTEGGSSAATDPSKNLLERK 150
|
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors. Length = 207 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-04
Identities = 35/114 (30%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 1937 TSSPESESTTTSSPESESTTTSSLVSESTTTS---SPESESTTTSSPESESTTTSSLVSE 1993
+P S ++T + + S TT S S ST + SP + S P + S S S
Sbjct: 563 AGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPA-GHLGSPPATPSKIVSP--ST 619
Query: 1994 STTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTT 2047
S S S STT SP S S+ T SPES S+ +S S +
Sbjct: 620 SPPASHLGSPSTTPSSPESSIKVASTE------TASPESSIKVASTESSVSMVS 667
|
Length = 670 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-04
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESE-STTTSSLVSESTTTSSPESESTTTSSP 1950
+E T +P + + +T S +E + T + V+ +T +P S S T +
Sbjct: 28 AEEIVTTTPATSTEAEQ-----TTPVESDATEEADNTETPVAATTAAEAP-SSSETAETS 81
Query: 1951 ESESTTTSSLVSESTTTSSPESESTT 1976
+ S T + SE+ T + +E++
Sbjct: 82 DPTSEATDTTTSEARTVTPAATETSK 107
|
Length = 814 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-04
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 1915 TTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESES 1974
T+S + + + T++ E + S E+ T + V+ +T +P S
Sbjct: 17 LLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSE 76
Query: 1975 TTTSSPESESTTTSSLVSESTTTSSPESESTTTI 2008
T +S + S T + SE+ T + +E++ +
Sbjct: 77 TAETSDPT-SEATDTTTSEARTVTPAATETSKPV 109
|
Length = 814 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 1991 VSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNP 2050
V E+ S + +TTT +P + +TTT++ + TTT +TTT++ + +TTT P
Sbjct: 35 VVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTT--TTKTTTTTTTTTTTTTTTEAP 92
Query: 2051 KSESTTTNNPASESITSSSPASESTTTSSPAS 2082
+TT+ P + + +P+S S S
Sbjct: 93 SKNTTTSEAPTTT--DTRAPSSIREIDGSLGS 122
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 2003 ESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPAS 2062
E+ S + +TTT++P + +TTT + + +T T++ +TTT + +TTT P+
Sbjct: 37 EAAEGQSQTTTTTTTTTPPTTTTTTTT--TTTTITTTTTKTTTTTTTTTTTTTTTEAPSK 94
Query: 2063 ESITSSSPASESTTTSSPASESTTTSSPAS 2092
+ TS +P +T T +P+S S S
Sbjct: 95 NTTTSEAPT--TTDTRAPSSIREIDGSLGS 122
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|225828 COG3291, COG3291, FOG: PKD repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-04
Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 15/242 (6%)
Query: 1896 TTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE-SES 1954
+T +P S + E+ + + + V+ + ++ T T+ E SE+
Sbjct: 21 STGTPTSWIWDFGDGENSTEQNPIHTYKKVGNYT-VNLTVENAAGSDTETKTNYIEVSEA 79
Query: 1955 TTTSSLVSESTTTSSPESES-TTTSSPESES---------TTTSSLVSESTTTSSPESES 2004
+ + T+ +P + + T TS+ E+ S TTS+ + T + + +
Sbjct: 80 PPVADFTANPTSGYAPLTVNFTDTSTNEATSWSWDFGDGGVTTSTEQNPVHTYTDAGTYT 139
Query: 2005 TTTISPVSEST-TTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASE 2063
T VS ST + S ++ T E + ++ T +++ N +S
Sbjct: 140 VTLT--VSNSTGSDSKTKTDYVTVSEEGIEEAVPEAASTVVTKPLTVSGTESSSGNLSSW 197
Query: 2064 SITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASE 2123
++T +P + S T ++ + + +
Sbjct: 198 VYVFEDDKGTNSTVKTPLLGGVIKVTLGSPLPDTVVYPTDKEGKGYYITLTGNGEFSFVD 257
Query: 2124 ST 2125
Sbjct: 258 VV 259
|
Length = 297 |
| >gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566) | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-04
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 1987 TSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTT 2046
+ S S S SSP S S +S ST+ SS SP S S ++ +S S+
Sbjct: 4 SVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNT-SSSSSF 62
Query: 2047 TNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTT 2106
+ + S+ + S S S S S S S +T ++S +S SP+ T
Sbjct: 63 GLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSS------SPSRSRRT 116
Query: 2107 TSSPESESTTTS 2118
TSS S S
Sbjct: 117 TSSDLSSGNGPS 128
|
Family of related proteins that is plant specific. Length = 313 |
| >gnl|CDD|114205 pfam05467, Herpes_U47, Herpesvirus glycoprotein U47 | Back alignment and domain information |
|---|
Score = 46.4 bits (109), Expect = 2e-04
Identities = 51/249 (20%), Positives = 100/249 (40%), Gaps = 11/249 (4%)
Query: 1895 TTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESES 1954
T +++P S S + +P ST +PE V+++ T ++ T ++P +
Sbjct: 240 TPSSTPSSTSASITSPHIPSTNIPTPE------PPPVTKNFTELHTDTIKVTPNTPTITA 293
Query: 1955 TTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSES 2014
TT S+ + P T T P +++ +E T + E+ + E+
Sbjct: 294 QTTESIKKIVKRSDFPRPMYTPTDIPTLTIRLNATIKTEQNTENPTENPKSPPKPTNFEN 353
Query: 2015 TTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASES 2074
TT P + + T+ + + T ++ TT + + + SI S + +S
Sbjct: 354 TTIRIPETFESATV---ATNATQKIESTTFATTIGIEEINDNIYSSPKNSIYLKSKSQQS 410
Query: 2075 TTTSSPASESTTTSSPASESTTTSSPASESTTTSS-PESESTTTSSPASESTTIEEQGVS 2133
TT + A +T + + S +T + + TT ++E TI+ V+
Sbjct: 411 TTKFTDAEHTTPILKFTTWQDAARTYMSHNTEVQNMTDRFQRTTLKSSNELPTIQTLSVT 470
Query: 2134 PHSEKLSAN 2142
P +KL +N
Sbjct: 471 P-KKKLPSN 478
|
Length = 627 |
| >gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family) | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-04
Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 13/163 (7%)
Query: 1962 SESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPV 2021
ST +S P + ST + S T S + + T SS S+ + IS + +T S
Sbjct: 461 YGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKSS-LSQEASLISKSTGNTHKHSTP 519
Query: 2022 SESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPA 2081
TT ++ S N + S SS + S +
Sbjct: 520 RRLTTL------PKLPAASRSSKGNLIRSG------ANGNASSDLSSPGSINSKSPEHSV 567
Query: 2082 SESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASES 2124
STT ++ ST + SP ES
Sbjct: 568 PLVRVFDIHLRASTTKGRHSTPSTNEKKKRLLKRSPLSPPKES 610
|
Length = 619 |
| >gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-04
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 7/115 (6%)
Query: 1988 SSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTT 2047
+++ +S S+ S+++ P+ STTT +TT TT ++ + + T
Sbjct: 144 TTMADQS---SAELSQNSGQSVPLDTSTTT----DPATTPAPAAPVDTTPTNSQTPAVAT 196
Query: 2048 NNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPAS 2102
+ N + S + A+ + + +T +
Sbjct: 197 APAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
|
Length = 331 |
| >gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor (transactivator) | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 46/252 (18%), Positives = 78/252 (30%), Gaps = 24/252 (9%)
Query: 1909 NPESESTTTSSPESE--STTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTT 1966
NPE T +SP S+ T + + + P + SS + + + S V ++T
Sbjct: 198 NPEEILETRASPLSQFHGFTPHPSLPQPQSPLKP-----SPSSARPQQSESFSDVWPAST 252
Query: 1967 TSSPESESTTTSSPESESTTTSSLVSE--STTTSSPESESTTTISPVSESTTTSSPVSES 2024
S E S +P S S+ S E +S S V +S+ + +
Sbjct: 253 QSPREETSAEPLAPASPSSRRPSTAQEEQIACSSPQAEPEQGVQSYVPQSSDSRPSCFPA 312
Query: 2025 TTTISP--------ESESTTTSSPASESTTTNNPKSESTTTNNP--ASESITSSSPASES 2074
+T P + A S S S
Sbjct: 313 PSTTQPTFLPPNTNKKAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPP 372
Query: 2075 TTTSSPASESTTTSSPASESTTTSSPA--SESTTTSSPESESTTTSSPASESTTIEEQGV 2132
+ + +S + T S A + + PA + +S + T SS + EQ +
Sbjct: 373 SNSPLLSSLADTPSGAAHQPASLLPPAVVQQQLEDASDKQPPTPGSSLVPQPD---EQEL 429
Query: 2133 SPHSEKLSANED 2144
P L +
Sbjct: 430 GPSVMALLDRDQ 441
|
This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses. Length = 500 |
| >gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9 | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-04
Identities = 43/282 (15%), Positives = 82/282 (29%), Gaps = 25/282 (8%)
Query: 1863 VIDNYSEIIFTTNNNS--ESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTT---- 1916
V+D+ ++ +S V + S + T S S+ P
Sbjct: 360 VVDHVLRDSQSSKIQQIRDSISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVS 419
Query: 1917 ----TSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPES 1972
+ + L+ + S S S + + + ST P
Sbjct: 420 SRRVGTPGSKSDRVGAVLLRRMNIKPTLASIPDEKPSNISVFEDSETSPNSSTLLRDPPP 479
Query: 1973 ESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPES 2032
+ S + + + + ++ P S S ++ T + S+ ++ S
Sbjct: 480 KKCGEESGHLPNNPFFNKLKLTLSSIPPLSPRQ---SIITLPTPSRPASRISSLSLRLGS 536
Query: 2033 ESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPAS 2092
S + SP T + + + N S++ P + + P
Sbjct: 537 YSGSIVSPPPYPTLVSRKGAAGLSFN----RSVSDIEGERIGRYNLLP---TRIPALPFK 589
Query: 2093 ESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSP 2134
+TTSS S SS S + P S E + P
Sbjct: 590 AESTTSSRRS-----SSLPSPTGVIGFPGSVPRFDHENLLPP 626
|
The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626 |
| >gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-04
Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 16/220 (7%)
Query: 1875 NNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSES 1934
++ S+VV + LN L ++N S + S S E ES+++S + + +
Sbjct: 145 KSDKASSVVSNELNLLKADN----SKPLAALQEKRSSSISPAGYQLEVESSSSSKINNSN 200
Query: 1935 TTTSSPESESTTTSSPES--ESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVS 1992
S + T T + + + TTS ES+TTS S+ + + +++ +S
Sbjct: 201 NNNHSNSNLMTPTPNKDFFLDRFTTSH---ESSTTSCRPSDLVGHFPFQQLNYASNARLS 257
Query: 1993 ESTTTS---SPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNN 2049
+ + S S+S S S S T S T++ P T S S S ++N
Sbjct: 258 TNPNPTLWFSQNSKSFEMNSEFSSSMTPSILPPSVTSSFLP----TPMSYKPSISLPSDN 313
Query: 2050 PKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSS 2089
P S T N + + S S S+ SS + E + SS
Sbjct: 314 PSIPSFTVNGVRNWEAGAFSNNSNSSNGSSSSIELQSNSS 353
|
Length = 459 |
| >gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-04
Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 15/151 (9%)
Query: 1869 EIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTS 1928
E ++ + V + N +NT T N + S T S + ++
Sbjct: 623 ESVYNPVEAGGTLEVAGSTNRKPDDNTIT-------VELLNEDDTSVTLESTDEWNSDGQ 675
Query: 1929 SLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTS 1988
V + + + ++ +V E+ ++TT+ P + +T T+
Sbjct: 676 WSVEVDLSDVETGNYTVEADDGDNTDRVNVEVVEET-----ERPDTTTSEDPTTTTTPTT 730
Query: 1989 SLVSESTTTSSPESESTTTISPVSESTTTSS 2019
+ E+T T+ P TTT P E+TT SS
Sbjct: 731 TGPEETTETAEPT---TTTEEPTEETTTGSS 758
|
Members of this family are the S-layer-forming halobacterial major cell surface glycoprotein. The highest scores below model cutoffs are fragmentary paralogs to actual members of the family. Modifications include at N-linked and O-linked glycosylation, a C-terminal diphytanylglyceryl modification, and probable cleavage of the PGF-CTERM tail. Length = 782 |
| >gnl|CDD|115650 pfam07010, Endomucin, Endomucin | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 3e-04
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 18/193 (9%)
Query: 1922 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE 1981
S S S V E+ S T+T+ + T SL + + T+ + TTTS
Sbjct: 14 SNSLCNSEGVKEAANNSLVT---TSTTKASITTPNTVSLKNVNKPTTGTPPKGTTTSE-- 68
Query: 1982 SESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPA 2041
+SL+S +T+ ++P+ E TT + V ++ +++S V+ + T+S + +S
Sbjct: 69 ---LLKTSLMSTATSLTTPKHELKTTTTGVRKNESSTSKVTVTNVTLSNAVSTLQSSQNK 125
Query: 2042 SESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPA 2101
+E N S TT +P S +SP TT S S TT+ S+S T
Sbjct: 126 TE-----NQSSIRTTEISPTSVLQPDASPKKTGTT-----SASLTTAETTSQSQDTEDGK 175
Query: 2102 SESTTTSSPESES 2114
ST++++P S
Sbjct: 176 IASTSSTTPSYSS 188
|
This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells. Length = 259 |
| >gnl|CDD|216860 pfam02063, MARCKS, MARCKS family | Back alignment and domain information |
|---|
Score = 45.2 bits (106), Expect = 3e-04
Identities = 49/253 (19%), Positives = 84/253 (33%), Gaps = 13/253 (5%)
Query: 1903 ESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESE-STTTSSLV 1961
E+ T P E+ SSP + + V + S +E+ ++ S
Sbjct: 12 EAATAERP-GEAAVASSPSKANGQENGHVKVNGDASPAAAEAGAKEELQANGSAPAEETG 70
Query: 1962 SESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPV 2021
E +++ E +S E + + +E + + E E+ T+ + +E T SP
Sbjct: 71 KEEAASAAAAEEKEAAASTEPDKEPAEAEPAEPASPAEAEGEAATS-TEKAEDGATPSPS 129
Query: 2022 SESTTTISPESESTTTSSPASESTTTNNPK--SESTTTNNPASESITSSSPASESTTTSS 2079
SE T + S S S + N K E A+E + A+ + +
Sbjct: 130 SE-TPKKKKKRFSFKKSFKLSGFSFKKNKKEAGEGAEAEGAAAEKEGAKEEAAAAAPEAG 188
Query: 2080 PASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKL 2139
E+ A + E + PE A E EE K
Sbjct: 189 SGEEAAAPGEEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEA-------KA 241
Query: 2140 SANEDPEEFPNED 2152
+ + EE P E+
Sbjct: 242 AEEQKAEEKPAEE 254
|
Length = 296 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 45.9 bits (108), Expect = 3e-04
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 2047 TNNPKSESTTTNNPASESITSSSPASESTTTSSPAS-ESTTTSSPASESTTTSSPASEST 2105
NP S ++T A+ S T+ S S ST + S + SP + + SP S S
Sbjct: 563 AGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSP-STSP 621
Query: 2106 TTSSPESESTTTSSPASESTTIEEQGVSPHSE-KLSANE 2143
S S STT SSP S + SP S K+++ E
Sbjct: 622 PASHLGSPSTTPSSPESSIKVASTETASPESSIKVASTE 660
|
Length = 670 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 3e-04
Identities = 39/125 (31%), Positives = 52/125 (41%), Gaps = 14/125 (11%)
Query: 1867 YSEIIFTTNNNSESTVVMSTLNSLLSENTT--TNSPESESTTTNNPESESTTTSSPESES 1924
Y +F N S ++ S S NTT ++SP + + +P + S P + S
Sbjct: 557 YIPGLFAGNPGSTNSTPTG---SAASSNTTFSSDSPSTVVAPSTSPPA-GHLGSPPATPS 612
Query: 1925 TTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESES 1984
S S S S S STT SSPES ST T+SPES S+ S S
Sbjct: 613 KIVSP--STSPPASHLGSPSTTPSSPESSIK------VASTETASPESSIKVASTESSVS 664
Query: 1985 TTTSS 1989
+ S
Sbjct: 665 MVSMS 669
|
Length = 670 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-04
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 1981 ESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTT-TSS 2039
E TT+ S ++P T E+ T +PV+ +T +P S T TS
Sbjct: 28 AEEIVTTTPATSTEAEQTTPVESDAT-----EEADNTETPVAATTAAEAPSSSETAETSD 82
Query: 2040 PASESTTTNNPKSESTTTNNPASESITSSSPASESTT 2076
P SE+T T SE+ T A T +S E T
Sbjct: 83 PTSEATDTTT--SEARTVTPAA----TETSKPVEGQT 113
|
Length = 814 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 22/78 (28%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 1915 TTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESES 1974
+ +S++TTT++ + TTT++ + +TT ++ +++TTT++ + +TTT++ E+ S
Sbjct: 36 VEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT--TTTTTTTTTEAPS 93
Query: 1975 TTTSSPESESTTTSSLVS 1992
T++ E+ +TT + S
Sbjct: 94 KNTTTSEAPTTTDTRAPS 111
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|225828 COG3291, COG3291, FOG: PKD repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-04
Identities = 44/267 (16%), Positives = 88/267 (32%), Gaps = 27/267 (10%)
Query: 1872 FTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTS-SL 1930
FT + T + + + + + ++ T T+
Sbjct: 17 FTDGSTGTPTSWIWDFGDGENSTEQNPIHTYKKVGNYT-VNLTVENAAGSDTETKTNYIE 75
Query: 1931 VSESTTTSSPESESTTTSSPESES-TTTSSLVSES---------TTTSSPESESTTTSSP 1980
VSE+ + + T+ +P + + T TS+ + S TTS+ ++ T +
Sbjct: 76 VSEAPPVADFTANPTSGYAPLTVNFTDTSTNEATSWSWDFGDGGVTTSTEQNPVHTYTDA 135
Query: 1981 ESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSP 2040
+ + T + VS ST + S T ++ E + P + ST P + S T SS
Sbjct: 136 GTYTVTLT--VSNSTGSDS--KTKTDYVTVSEEGIEEAVPEAASTVVTKPLTVSGTESSS 191
Query: 2041 ASESTTT--------NNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPAS 2092
+ S+ N ++ ++ S P + T E +
Sbjct: 192 GNLSSWVYVFEDDKGTNSTVKTPLLGGVIKVTLGSPLPDTVVYPTD---KEGKGYYITLT 248
Query: 2093 ESTTTSSPASESTTTSSPESESTTTSS 2119
+ S + + SE+ + S
Sbjct: 249 GNGEFSFVDVVAYVKNGDWSENNSPSE 275
|
Length = 297 |
| >gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 2008 ISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITS 2067
+ +S+++ S P+ STTT + +T + ++T TN+ T PA +
Sbjct: 151 SAELSQNSGQSVPLDTSTTT---DPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDP-QQ 206
Query: 2068 SSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTS 2108
++ + S A+ + + +T
Sbjct: 207 NAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTP 247
|
Length = 331 |
| >gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (106), Expect = 4e-04
Identities = 44/206 (21%), Positives = 85/206 (41%), Gaps = 20/206 (9%)
Query: 1967 TSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTT 2026
TS+P T + E+TT + + T T ++ TT +P T + V ++ T
Sbjct: 144 TSTP---VAPTQEVKKETTTQQAAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNAT 200
Query: 2027 TISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPAS--ESTTTSSPASES 2084
T + +S T + + + S NN +S SI + ++ T++P +E
Sbjct: 201 THAVKSGDTIWALSVKYGVSVQDIMS----WNNLSSSSIYVGQKLAIKQTANTATPKAE- 255
Query: 2085 TTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANED 2144
T +PA+E P + T ++ T ++ E+TT +Q +P + +A
Sbjct: 256 VKTEAPAAEKQAA--PVVKENTNTN------TATTEKKETTT--QQQTAPKAPTEAAKPA 305
Query: 2145 PEEFPNEDVFEHTFAEIPNIDHSNQT 2170
P N + + N +++N +
Sbjct: 306 PAPSTNTNANKTNTNTNTNTNNTNTS 331
|
Length = 481 |
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 4e-04
Identities = 36/187 (19%), Positives = 71/187 (37%), Gaps = 7/187 (3%)
Query: 1880 STVVMSTLNSLL-SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTS 1938
S+ +++ L+ +N+ N S+S+ + PE E + S S +
Sbjct: 220 SSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQH---HSIGIN 276
Query: 1939 SPESESTTTSSPESE---STTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSEST 1995
+ S+ + E + + S S S+T S E+ S ++S+ + SS ++ +
Sbjct: 277 NHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHS 336
Query: 1996 TTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSEST 2055
+ S + S ++S +ES + +S S S S + N E+
Sbjct: 337 NRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKDASGMSANGTVENC 396
Query: 2056 TTNNPAS 2062
N S
Sbjct: 397 IPENKIS 403
|
This entry is a highly conserved protein present in eukaryotes. Length = 680 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 4e-04
Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Query: 2029 SPESESTTTSSPASESTTTNNPKSESTTTNNPAS--ESITSSSPASEST----TTSSPA- 2081
+P S ++T + A+ S TT + S ST S S PA+ S +TS PA
Sbjct: 565 NPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPAS 624
Query: 2082 ---SESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASES 2124
S STT SSP S S+ T+SPES S+ +S S
Sbjct: 625 HLGSPSTTPSSPESSIKVASTE------TASPESSIKVASTESSVS 664
|
Length = 670 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 2041 ASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSP 2100
A + E+ + + + T+++P + +TTT++ + TTT +TTT++
Sbjct: 25 AQGEGQYDAAVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTT--TTKTTTTTTTT 82
Query: 2101 ASESTTTSSPESESTTTSSPASEST 2125
+ +TTT +P +TT+ +P + T
Sbjct: 83 TTTTTTTEAPSKNTTTSEAPTTTDT 107
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 1911 ESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSP 1970
+ +TTT++ +TTT++ + +T T++ +TTT++ + +TTT +P
Sbjct: 33 AAVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAP 92
Query: 1971 ESESTTTSSPESESTTTSSLVSE 1993
+TT+ +P + T S + E
Sbjct: 93 SKNTTTSEAPTTTDTRAPSSIRE 115
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 21/89 (23%), Positives = 45/89 (50%)
Query: 1941 ESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSP 2000
+ +TTT++ +TTT++ + +T T++ +TTT++ + +TTT +P
Sbjct: 33 AAVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAP 92
Query: 2001 ESESTTTISPVSESTTTSSPVSESTTTIS 2029
+TT+ +P + T S + E ++
Sbjct: 93 SKNTTTSEAPTTTDTRAPSSIREIDGSLG 121
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 4e-04
Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 31/249 (12%)
Query: 1897 TNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTT 1956
T SP + P ST + P S T + V +S T++ + T S + TT
Sbjct: 191 TPSPLGRMVNSYAP---STFMTMPRSHGITPRTTVKDSEITATYKMLETNPSKRTAGKTT 247
Query: 1957 TSSL--VSESTTTS-SPESESTTTSSPES---ESTTTSSLVSESTTTSSP-----ESEST 2005
+ L ++++T T + E E+ +SP S ++T T+ ES ++++ ++ T
Sbjct: 248 PTPLKGMTDNTPTFLTREVETDLLTSPRSVVEKNTLTTPRRVESNSSTNHWGLVGKNNLT 307
Query: 2006 TTISPVSESTTTSSPVSESTTTISPESESTTTSSPASEST-TTNNPKSESTTTN---NPA 2061
T V E T SE TIS + S+ + AS + NP S ++ A
Sbjct: 308 TPQGTVLEHT---PATSEGQVTISIMTGSSPAETKASTAAWKIRNPLSRTSAPAVRIASA 364
Query: 2062 SESITSSSPASESTTTSSPASESTTTSS--------PASESTTTSSPASESTTTSSPESE 2113
+ +P++ +T ++P + T+ PA TT SP+ TT PE+
Sbjct: 365 TFRGLEKNPSTAPSTPATPRVRAVLTTQVHHCVVVKPAPAVPTTPSPS--LTTALFPEAP 422
Query: 2114 STTTSSPAS 2122
S + S+
Sbjct: 423 SPSPSALPP 431
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 4e-04
Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 26/197 (13%)
Query: 1971 ESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISP 2030
E + +++++ + + S S+ SS + E SP ++ +S+ TT P
Sbjct: 199 EIQPSSSNNEAPKEGNNQT--SLSSIRSSKKQER----SPKKKAPQRDVSISDRATT--P 250
Query: 2031 ESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSP 2090
+ ++S + ST T T S +S+ + +T S S
Sbjct: 251 IAPGVESASQSISSTPTPVSTDTPLHTVKDDSIKFDNSTLGTPTT----HVSMKKKESEN 306
Query: 2091 ASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEE--------------QGVSPHS 2136
SE S + + + T ++ + E Q +SP
Sbjct: 307 DSEQQLNFPKDSTDEIRKTIQHDVETNAAFQNPLFNDELKWWLASKRYLTQPLQEMSPSM 366
Query: 2137 EKLSANEDPEEFPNEDV 2153
N + DV
Sbjct: 367 VSTLENSLLNCPDSLDV 383
|
Length = 548 |
| >gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp) | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-04
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 1984 STTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASE 2043
S T + + T+ + ++ + V+ ST T +P + + +S + T +
Sbjct: 2 SVTELTFSYNLSDTTLFPNATSKGVKTVTSSTDTKAPTNTTYRCVSSTTVPMTNVTVTLH 61
Query: 2044 STTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPA 2091
T S T + + SP + +T + SP SSPA
Sbjct: 62 DVTLQAYLSNGTFSKTETRCEADTPSPTTVATPSPSPTP---VPSSPA 106
|
Length = 305 |
| >gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein) | Back alignment and domain information |
|---|
Score = 43.7 bits (102), Expect = 5e-04
Identities = 34/186 (18%), Positives = 74/186 (39%), Gaps = 14/186 (7%)
Query: 1968 SSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTT 2027
++ E E T + E+++ ++ V E+ P+ ++ T + E +
Sbjct: 28 AATEEEGTPKENEEAQAAAETTEVKEAKE-EKPDKDAQDTANKTEEKEGEKEAAAAKEEA 86
Query: 2028 ISPESESTTTSSPA-SESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTT 2086
E E T ++ A +E ++P+ E PA+ + ASE+++ + ++
Sbjct: 87 PKAEPEKTEGAAEAKAEPPKASDPEQEPAAAPGPAAGG--EAPKASEASSQPAESAAPAK 144
Query: 2087 TSSPASE---STTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANE 2143
+ E + T +PA+ + E+ + ++PAS+S + E +A E
Sbjct: 145 EEEKSKEEGEAKKTEAPAAAA-------QETKSDAAPASDSKPSSSEAAPSSKETPAATE 197
Query: 2144 DPEEFP 2149
P
Sbjct: 198 APSSTA 203
|
This family consists of several brain acid soluble protein 1 (BASP1) or neuronal axonal membrane protein NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent calmodulin-binding protein of unknown function. Length = 233 |
| >gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 5e-04
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 2005 TTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASES 2064
T PV+ T +S+ S T S + + P+S +T + S S +
Sbjct: 295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVA---LSSA 351
Query: 2065 ITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASES 2124
S + T + PA+E +T T ++ + T+++ TTS PA+ +
Sbjct: 352 GVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTA---NGPTTSLPAAPA 408
Query: 2125 TTIEEQGVSPHS 2136
+ I VSP S
Sbjct: 409 SNIP---VSPTS 417
|
Length = 421 |
| >gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 5e-04
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
Query: 1932 SESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLV 1991
+ +P S T +S+ S S +S +TTT + ++ L
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPS--PAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 1992 SESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPAS-ESTTTNNP 2050
S+ T + + ++ + +T+ ST I+ + TTS PA+ S +P
Sbjct: 356 SDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSP 415
Query: 2051 KS 2052
S
Sbjct: 416 TS 417
|
Length = 421 |
| >gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 5e-04
Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 19/242 (7%)
Query: 1928 SSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTT 1987
+S E S E + + + + S T + P SEST T +P +
Sbjct: 59 TSDDLEKMVLSIKEKKDLEPLALPMPNLAPITPPSSEPTPAPPSSESTATRTP--DPNQQ 116
Query: 1988 SSLVSESTTTSSPESESTTTISPV---SESTTTSSPVSESTTTI----SPESESTTTSSP 2040
+ +EST+T+S + + S S T+TSS + +T++ SP S++ S
Sbjct: 117 ALESTESTSTTSADCNDSEQSSTPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRST 176
Query: 2041 ASESTTTNNPKSESTTTNNPASESITSSSP-------ASESTTTSSPASESTTTSSPASE 2093
A + +P + T P ++ S + ++ P
Sbjct: 177 AQLNKAP-SPTKSAEPTAAPQAKPELPKKKQAMFTLGGSSGDDDEDSFEDRMSSQDPKRS 235
Query: 2094 STTTSSPASESTTTSSPESESTTTS-SPASESTTIEEQGVS-PHSEKLSANEDPEEFPNE 2151
S P S +S + SP ++ + +EQ V+ E+ S +++ E
Sbjct: 236 SLPKPKPKMFQLGGSDELGKSLPSLMSPRKKTASFKEQVVTRTFPERTSDDDEDAIETEE 295
Query: 2152 DV 2153
D
Sbjct: 296 DD 297
|
This family is conserved in fungi but the function is not known. Length = 509 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-04
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 2016 TTSSPV---SESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPAS 2072
T S+P +E T +P + + + ES T ++++T T A+ + + S S
Sbjct: 19 TASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATE--EADNTETPVAATTAAEAPSS-S 75
Query: 2073 ESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESES 2114
E+ TS P SE+T T++ S + + + T+ E ++
Sbjct: 76 ETAETSDPTSEATDTTT----SEARTVTPAATETSKPVEGQT 113
|
Length = 814 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-04
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 2001 ESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNP 2060
E TT S ++PV T E+ T +P + +T P S T
Sbjct: 28 AEEIVTTTPATSTEAEQTTPVESDAT-----EEADNTETPVAATTAAEAPSSSETAET-- 80
Query: 2061 ASESITSSSPASESTTTSSPASESTTT 2087
S+ + ++ + S + + + T+
Sbjct: 81 -SDPTSEATDTTTSEARTVTPAATETS 106
|
Length = 814 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1895 TTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESES 1954
+S++TTT + TTT++ + +TT ++ +++TTT++ + +TTT+ S++
Sbjct: 36 VEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKN 95
Query: 1955 TTTSSLVSESTTTSSPESESTTTSSPES 1982
TTTS +T T +P S S S
Sbjct: 96 TTTSE-APTTTDTRAPSSIREIDGSLGS 122
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 42.2 bits (98), Expect = 5e-04
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 1971 ESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISP 2030
+ +TTT++ +TTT++ + +T T + +TTT++ + +TTT +P
Sbjct: 33 AAVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAP 92
Query: 2031 ESESTTTSSPASESTTTNNPKSESTTTNNPAS 2062
+TT+ +P +T T P S + S
Sbjct: 93 SKNTTTSEAPT--TTDTRAPSSIREIDGSLGS 122
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 1921 ESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSP 1980
S S +T SL+S SP S S T EST + S + E S S S P
Sbjct: 1 LSCSDSTRSLLSPLGNELSP-SSSDETEDCSEESTDSWSDMYEGLKDSESSSNSV----P 55
Query: 1981 ESESTTTSSLVSESTTTS 1998
++T+S +S+S+T S
Sbjct: 56 SLSLSSTASSLSDSSTYS 73
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 6e-04
Identities = 43/211 (20%), Positives = 69/211 (32%), Gaps = 23/211 (10%)
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPV 2011
ES S + ES S T + L S S + + +
Sbjct: 236 DESPELKSSIEESYGQQS--FGKTMDELKSPAKAKLTKLKIPSQPVEQSYSGDVSCVEEI 293
Query: 2012 SESTTTSSPVSESTTTISPESESTTTSSPASES----TTTNNPKSESTTTNNPA------ 2061
+ T S P + ++E + P +S T N K ++
Sbjct: 294 LKEMTHSWPPPLTAIHTPGKTEPSKFPFPTKDSQHVSPGTQNQKQYDPSSKTSTNSQSGT 353
Query: 2062 ---------SESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPES 2112
S S S + S S +S+P ++++ S +S S + SS S
Sbjct: 354 SMLEDDLKLSSSEDSDEEQATEKPPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESSSGS 413
Query: 2113 ESTTTSSPASESTTIEEQGV-SPHSEKLSAN 2142
+S + SS +S+S E SP E S N
Sbjct: 414 DSESESS-SSDSEENEPPRTASPEPEPPSTN 443
|
This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154 |
| >gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 2067 SSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTT 2126
S S +T + SE TTS+ + TTTSS S TTT+S ++++ T S +TT
Sbjct: 53 YSGSGSGATPSDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTT 112
Query: 2127 IEEQGVSPHSEKLSANEDPEEFPNED 2152
+ + + + E P E +
Sbjct: 113 SPSETDTEEATTTVSTETPTEGGSSA 138
|
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors. Length = 207 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-04
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 1922 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE 1981
S+S +L + + ++ + ST S E+ T +P
Sbjct: 7 SKSAVALTLALLTASNPKLAQAEEIVTTTPATSTEAEQTT---PVESDATEEADNTETPV 63
Query: 1982 SEST-TTSSLVSESTTTSSPESESTTTI-----SPVSESTTTSSPVSEST 2025
+ +T + SE+ TS P SE+T T + +T TS PV T
Sbjct: 64 AATTAAEAPSSSETAETSDPTSEATDTTTSEARTVTPAATETSKPVEGQT 113
|
Length = 814 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 42.2 bits (98), Expect = 6e-04
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 1961 VSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSP 2020
V E+ S + +TTT++P + +TTT++ + +T T++ +TTT + + +TTT +P
Sbjct: 35 VVEAAEGQSQTTTTTTTTTPPTTTTTTTT--TTTTITTTTTKTTTTTTTTTTTTTTTEAP 92
Query: 2021 VSESTTTISPESESTTTSSPASESTTTNNPKS 2052
+TT+ +P +T T +P+S + S
Sbjct: 93 SKNTTTSEAP--TTTDTRAPSSIREIDGSLGS 122
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9 | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 6e-04
Identities = 43/254 (16%), Positives = 73/254 (28%), Gaps = 9/254 (3%)
Query: 1864 IDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESE 1923
I++ S+ I T + S L+ ++ T + + S
Sbjct: 315 IESKSKTISKTFTLIYKALEESILDKGVASRTNREL-APKWLSLKTVVDHVLRDSQSSKI 373
Query: 1924 STTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESE 1983
S+ + S+P S T SS S S + S + S T
Sbjct: 374 QQIRDSISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGT---PGSKS 430
Query: 1984 STTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASE 2043
+ L+ + S S +S + + + ST P + S
Sbjct: 431 DRVGAVLLRRMNIKPTLASIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCGEESGHLP 490
Query: 2044 STTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPA-SESTTTSSPAS 2102
NNP + ++ T S PAS ++ S S S + SP
Sbjct: 491 ----NNPFFNKLKLTLSSIPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPP 546
Query: 2103 ESTTTSSPESESTT 2116
T S + +
Sbjct: 547 YPTLVSRKGAAGLS 560
|
The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626 |
| >gnl|CDD|177546 PHA03151, PHA03151, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (103), Expect = 6e-04
Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 16/198 (8%)
Query: 1901 ESESTTTNNPESESTTTSSPESESTTTSSLVSESTT---------TSSPESESTTTSSPE 1951
E +ST + N ++ES++ +++ S V ST T + + S+ +
Sbjct: 42 EDDSTPSENTKAESSSIDEDGLLTSSGSDSVFNSTDYESTPEPSKTPGFSDSNVSDSNND 101
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPV 2011
+ S+ SS T+ S + E+ SS + S + TI
Sbjct: 102 KDFDFKPQDEDTSSDDSSAPDFITSLVSSDCEARGLSSSEEDGEPYSKQKMSQPLTIDAK 161
Query: 2012 SESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPA 2071
+E T+ + E + K + + + + P
Sbjct: 162 TEEITSEEDCCVQEDSSDSEEDVVEAFIRQRAQMAGKKKKGKRSIST-------SDDEPP 214
Query: 2072 SESTTTSSPASESTTTSS 2089
+S S++T S
Sbjct: 215 RKSRRKRHSHRISSSTDS 232
|
Length = 259 |
| >gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 6e-04
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 1921 ESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSP 1980
++ STT SS++ S+T S TT + E+ + S++S T E ++ + SP
Sbjct: 2 DNSSTTLSSIILSSSTLSP-----TTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSP 56
Query: 1981 ESESTTTSSLVSESTT 1996
S S+++SS S S T
Sbjct: 57 NSNSSSSSSSSSSSIT 72
|
Length = 417 |
| >gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 1981 ESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSP 2040
++ STT SS++ S+T S + T + + ES + S +E T P SE + SP
Sbjct: 2 DNSSTTLSSIILSSSTLSP--TTFFTIETSMDESKSIISTFTEIIPTEIPTSE---SPSP 56
Query: 2041 ASESTTTNNPKSESTTTNNPASESIT 2066
S S+++++ S S T + +IT
Sbjct: 57 NSNSSSSSSSSSSSITYDYEYENNIT 82
|
Length = 417 |
| >gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 1971 ESESTTTSSPESESTTTSSLVSESTTTSSPES---ESTTTISPVSESTTTSSPVSESTTT 2027
++ STT SS SS TT + E+ ES + IS +E T P SES +
Sbjct: 2 DNSSTTLSS-----IILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPS- 55
Query: 2028 ISPESESTTTSSPASESTT 2046
P S S+++SS +S S T
Sbjct: 56 --PNSNSSSSSSSSSSSIT 72
|
Length = 417 |
| >gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 6e-04
Identities = 45/200 (22%), Positives = 68/200 (34%), Gaps = 27/200 (13%)
Query: 1993 ESTTTSSPESESTTTI-SPVSESTTTSSPVS-ESTTTISPESESTTTSSPASESTTTNNP 2050
+S + + E E+ P E+ T +PV S + E + T+ P S + P
Sbjct: 378 QSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGK---TAGPVSNQENNDVP 434
Query: 2051 -----KSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASEST 2105
E+ T A S S ASE+ T S ++ S SE+
Sbjct: 435 PWEDAPDEAQTAAGTAQTSAKSIQTASEA-ETPPENQVSKNKAADNETDAPLSEVPSENP 493
Query: 2106 TTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEFPNEDVFEHTFAEIPNID 2165
++P E+ T + A E+ G FP+ D AEIP D
Sbjct: 494 IQATPNDEAVETETFAHEAPAEPFYGYG--------------FPDNDCPPEDGAEIPPPD 539
Query: 2166 --HSNQTDEAIPETFDAREE 2183
H+ D A + E
Sbjct: 540 WEHAAPADTAGGGADEEAEA 559
|
Length = 709 |
| >gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (104), Expect = 7e-04
Identities = 29/159 (18%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 1871 IFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSL 1930
I + NN S S++ + + + T +P++E T + E+ +T T++
Sbjct: 224 IMSWNNLSSSSIYVGQ-KLAIKQTANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATT 282
Query: 1931 VSESTTTSSPESESTTTSSPE-----SESTTTSSLVSESTTTSSPESESTTTSSPESEST 1985
+ TTT + T +P + + +T++ +++ T ++ + +T TS+P +
Sbjct: 283 EKKETTTQ----QQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTN 338
Query: 1986 TTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSES 2024
T ++ S T ++ + + S + +++ S+ ++E+
Sbjct: 339 TNTN----SNTNTNSNTNANQGSSNNNSNSSASAIIAEA 373
|
Length = 481 |
| >gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 7e-04
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 6/186 (3%)
Query: 1876 NNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSEST 1935
+ S S+ +SL S + SP S+S + N ++T S + S V +
Sbjct: 91 PITHSPSATSSTSSLNSNDGDQFSPASDSLSFNP-----SSTQSRKDSGPGDGSPVQKRK 145
Query: 1936 TTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSEST 1995
P S + T P + S S E S + S + S S S
Sbjct: 146 NPLLPSSSTHGTHPPIVFTDNNGSHAGAPNARSRKEIPSLGSQSMQLPSPHFRQKFSSSD 205
Query: 1996 TTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTN-NPKSES 2054
T++ S S S ++ S P S + + S S+ S +S T ++ N ++ S
Sbjct: 206 TSNGFSYPSIRKNSRHSSNSMPSFPHSSTAVLLKRHSGSSGASLISSNITPSSSNSEAMS 265
Query: 2055 TTTNNP 2060
T++ P
Sbjct: 266 TSSKRP 271
|
Length = 1175 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 7e-04
Identities = 42/253 (16%), Positives = 77/253 (30%), Gaps = 19/253 (7%)
Query: 1893 ENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSP-- 1950
E T +++ + N SE E ES+ + S+ E ++ + +SSP
Sbjct: 95 ERVTAKKSKTQELSRPNSPSEGEGEGEGEGESSDSRSVNEEGSSDPKDIDQDNRSSSPSI 154
Query: 1951 ----ESESTTTSSLVSESTTTSSPESE---STTTSSPESESTTTSSLVSESTTTSSPESE 2003
++ES + SS + P S +P + T S+ + P
Sbjct: 155 PSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSA-------QAVPPQG 207
Query: 2004 STTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASE 2063
S P + S S ++ P+ + P T + ++
Sbjct: 208 SPIAAQPAPQPQQPSPLSLISAPSLHPQ-RLPSPHPPLQPQTASQQSPQPPAPSSRHPQS 266
Query: 2064 SITSSSPASESTTTSSPASESTTTSSPAS--ESTTTSSPASESTTTSSPESESTTTSSPA 2121
S P P +S+P + P + + P S + + S
Sbjct: 267 SHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSAL 326
Query: 2122 SESTTIEEQGVSP 2134
EQ + P
Sbjct: 327 QPQQPPREQPLPP 339
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|217503 pfam03344, Daxx, Daxx Family | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 7e-04
Identities = 38/211 (18%), Positives = 65/211 (30%), Gaps = 1/211 (0%)
Query: 1859 VAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTS 1918
S + S + S S L + E + ES +S
Sbjct: 505 RRNSEMAGISRMSEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESDEELLAEESPLSS 564
Query: 1919 SPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTS 1978
E E T S++ P +TS +T TS+ + + + +P+ E +
Sbjct: 565 HTELEGVATPVETKISSSRKLPPP-PVSTSLENDSATVTSTTRNGNVSPHTPQDEQPPSG 623
Query: 1979 SPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTS 2038
S + + + T+ SPV++S+T + S TS
Sbjct: 624 RKRKRKEEVESEPLGNQYLRHHNGSEKDGLPAPMDPVTSCSPVADSSTRVDTPSHELVTS 683
Query: 2039 SPASESTTTNNPKSESTTTNNPASESITSSS 2069
SP + K T +P + S S
Sbjct: 684 SPQTPGDPPKKNKVNVATQCDPEEVIVLSDS 714
|
The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715 |
| >gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9 | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 7e-04
Identities = 57/308 (18%), Positives = 99/308 (32%), Gaps = 38/308 (12%)
Query: 1870 IIFTTNN---NSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTS-------S 1919
++FT N V +L L + TT ++ +T T+ ES+S T S
Sbjct: 272 LLFTNLNHELQKMLDSVERSLQKLQNNKTTGMHLDNRTTMTDQIESKSKTISKTFTLIYK 331
Query: 1920 PESESTTTSSLVSESTTTSSP--------ESESTTTSSPESESTTTSSLVSESTTTSSPE 1971
ES + S + +P S S+ + S+P
Sbjct: 332 ALEESILDKGVASRTNRELAPKWLSLKTVVDHVLRDSQSSKIQQIRDSISVSGSDYSNPG 391
Query: 1972 SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPE 2031
S T SS S S +++ + S +P S+S + + I P
Sbjct: 392 SSIDTPSSSPSSSV----IMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLL-RRMNIKPT 446
Query: 2032 SESTTTSSP---ASESTTTNNPKSESTTTNNPASESITSSSPASES---------TTTSS 2079
S P + + +P + ST +P + S + T +S
Sbjct: 447 LASIPDEKPSNISVFEDSETSP-NSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTLSSI 505
Query: 2080 PASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKL 2139
P S + T + + S+ + S S + SP T + +G + S
Sbjct: 506 PPLSPR--QSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLSFNR 563
Query: 2140 SANEDPEE 2147
S ++ E
Sbjct: 564 SVSDIEGE 571
|
The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 8e-04
Identities = 32/287 (11%), Positives = 67/287 (23%), Gaps = 33/287 (11%)
Query: 1895 TTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESES 1954
+P + P + P + + + + P + + SES
Sbjct: 2736 PAAPAPPAVPAGPATPGGP-ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794
Query: 1955 TTTSSLVSE----STTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTI-- 2008
+ + +P + +SP +S + + +
Sbjct: 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854
Query: 2009 -----SPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASE 2063
V + SP ++ P + + + + P + P +
Sbjct: 2855 SVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAP 2914
Query: 2064 SITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTT----------------- 2106
P P P TT + A E +
Sbjct: 2915 PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV 2974
Query: 2107 ----TSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEFP 2149
P +S T VS + L+ +E+ + P
Sbjct: 2975 PRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPP 3021
|
Length = 3151 |
| >gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt) | Back alignment and domain information |
|---|
Score = 44.6 bits (104), Expect = 8e-04
Identities = 58/302 (19%), Positives = 90/302 (29%), Gaps = 27/302 (8%)
Query: 1906 TTNNPESE-STTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESEST--------- 1955
NP SE ++PE ++ V+ES SS E + + + ES
Sbjct: 57 NVGNPSSEVGKEENAPEVKAEDLEPAVAESVEHSSSEVGKEVSETEKEESNPEVKAEDLQ 116
Query: 1956 ---TTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVS 2012
ES P S +PE E+ + S E +S S
Sbjct: 117 PAVDGDIAHHESEVGDKPAKTSKEEENPEIEAEDGEPAKDDGIEESH--QEEDEIVSESS 174
Query: 2013 ESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPAS 2072
+ T+ +E S ++S E + T +S ++
Sbjct: 175 KEEFTAEVKAEDLQPAVDGSIEHSSSEVGEEVSKTEKEESNPEVKAEDLQPAVDDDVAHH 234
Query: 2073 ESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPE---------SESTTTSSPASE 2123
ES PA S +P ++ S SS E E S A +
Sbjct: 235 ESEVGDKPAETSKEEETPEVKAEDLQPAVDGSVEHSSSEIEEHQGETEKEEGIPESHAED 294
Query: 2124 STTIEEQGVS-PHSEKLSANEDPEEFPNEDVFEHTFAE--IPNIDHSNQTDEAIPETFDA 2180
+ V P SE A E+ E E+ AE D + + + +
Sbjct: 295 LQPAVDDIVEHPSSEPFVAEEEVSETEKEENNPEVLAEDLQDAADGESGVSDQPAQVVEE 354
Query: 2181 RE 2182
RE
Sbjct: 355 RE 356
|
This entry represents 77 residues of an 80 amino acid (240 nucleotide) tandem repeat, found in a variable number of copies in an immunodominant outer membrane protein of Ehrlichia chaffeensis, a tick-borne obligate intracellular pathogen. Length = 707 |
| >gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt) | Back alignment and domain information |
|---|
Score = 44.3 bits (103), Expect = 8e-04
Identities = 60/343 (17%), Positives = 98/343 (28%), Gaps = 38/343 (11%)
Query: 1858 AVAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTT 1917
AVA SV + SE+ + + L + ES + P S
Sbjct: 82 AVAESVEHSSSEVGKEVSETEKEESNPEVKAEDLQPAVDGDIAHHESEVGDKPAKTSKEE 141
Query: 1918 SSPESESTTTSSLVSESTTTSSPESESTTTSS------PESESTTTSSLVSESTTTSSPE 1971
+PE E+ + S E + + S E ++ V S SS E
Sbjct: 142 ENPEIEAEDGEPAKDDGIEESHQEEDEIVSESSKEEFTAEVKAEDLQPAVDGSIEHSSSE 201
Query: 1972 SESTTTSSPESEST-----------------TTSSLVSESTTTSSPESESTTTISPVSES 2014
+ + + ES S V + +S E E T +
Sbjct: 202 VGEEVSKTEKEESNPEVKAEDLQPAVDDDVAHHESEVGDKPAETSKE-EETPEVKAEDLQ 260
Query: 2015 TTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASE- 2073
V S++ I T ES + + +P+SE + SE
Sbjct: 261 PAVDGSVEHSSSEIEEHQGETEKEEGIPESHAEDLQPAVDDIVEHPSSEPFVAEEEVSET 320
Query: 2074 STTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVS 2133
++P + A + S ++ E E + E
Sbjct: 321 EKEENNPEVLAEDLQDAADGESGVSDQPAQVVEERESEIEEHQGETEKEEGIP------E 374
Query: 2134 PHSEKLSANEDPEEFPNEDVFEHTFAEIPNIDHSNQTDEAIPE 2176
H+E DP EH AE+ + +E+ PE
Sbjct: 375 SHAEDDEIASDPS-------IEHFSAEVGKEVSETEKEESNPE 410
|
This entry represents 77 residues of an 80 amino acid (240 nucleotide) tandem repeat, found in a variable number of copies in an immunodominant outer membrane protein of Ehrlichia chaffeensis, a tick-borne obligate intracellular pathogen. Length = 707 |
| >gnl|CDD|240323 PTZ00233, PTZ00233, variable surface protein Vir18; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 8e-04
Identities = 58/329 (17%), Positives = 111/329 (33%), Gaps = 54/329 (16%)
Query: 1894 NTTTNSPESESTTTNN-PESESTTTSSPES-ESTTTSSLVSESTTTSS---PESESTTTS 1948
P + TT + T +P+ ++ + S L + S + + + +
Sbjct: 104 FPAKKPPLIKPTTQEPCKGGKGCKTETPQRVDTKSQSKLRPVPSKAKSLEIKDPQEQSQN 163
Query: 1949 SPESESTTTSSLV--SESTTTSSPESESTTTSSPES---ESTTTSSLVSESTT--TSSPE 2001
+++ + S+V +S + SP S T P+S +TTS + T +S +
Sbjct: 164 QADAQESNKESVVLQPQSDSMPSPSSIGTEDKEPQSIVNHHSTTSGMGETQTQQLNASGD 223
Query: 2002 SESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPAS-----ESTTTNNPKSESTT 2056
S S + + ES T + E+ TS + ++ N+P+++ +
Sbjct: 224 SPIRELDSSAGDPPSECVSGKESDLTCTSTGENLDTSLFQTNLSSGKTLDANHPETQDSA 283
Query: 2057 TNNPASE---------------SITSSSPASE--------STTTSSPAS-------ESTT 2086
N + S +P S T T ++ E+T
Sbjct: 284 GNVIEVQTHGDKDIITEAADNLSSLEGTPGSVQLADEDSVDTDTDRGSTGAVASDPENTG 343
Query: 2087 TSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPH-SEKL------ 2139
T +SES ++ S + S + ES +E H SE +
Sbjct: 344 TEETSSESLVSAPSGDVSNGGITEVDISNDDKAVDGESNGVEISHDQEHDSETICNESTC 403
Query: 2140 SANEDPEEFPNEDVFEHTFAEIPNIDHSN 2168
++ E + A+I N+ SN
Sbjct: 404 REEQNGELTDDGGDKLDILAQIFNVIQSN 432
|
Length = 509 |
| >gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 8e-04
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSY--NQGWGEQGLFKIRRGVNMCSIEDSV 2405
H+V IIGWG YWL + + + W + G KI RGVN +IE V
Sbjct: 404 HTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEV 454
|
Length = 548 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 9e-04
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 1945 TTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESES 2004
T+S + + + T++ E + S E+ T + V+ +T +P S
Sbjct: 17 LLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSE 76
Query: 2005 TTTISPVSESTTTSSPVSESTTTISPESESTT 2036
T S + S T + SE+ T +E++
Sbjct: 77 TAETSDPT-SEATDTTTSEARTVTPAATETSK 107
|
Length = 814 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 41.8 bits (97), Expect = 9e-04
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 1965 TTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSES 2024
T + ++ + E +S TT++ +TTT+ P + +TTT + +T T++ +
Sbjct: 24 TAQGEGQYDAAVVEAAEGQSQTTTT----TTTTTPPTTTTTTT---TTTTTITTTTTKTT 76
Query: 2025 TTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPAS 2072
TTT + + +TTT +P+ +TT+ P +T T P+S S S
Sbjct: 77 TTTTTTTTTTTTTEAPSKNTTTSEAPT--TTDTRAPSSIREIDGSLGS 122
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|224343 COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 9e-04
Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 21/168 (12%)
Query: 1980 PESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSS 2039
P + + + VS+++ S + STT SE TT++SP S +T S T +
Sbjct: 134 PPTLPDQSVASVSQNSQDVSLATSSTTP----SEGTTSASPSSATT--------SFTPTV 181
Query: 2040 PASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSS 2099
A K + A + +S++PA++ T A T+ + S
Sbjct: 182 TAIAPVVAPTAKPVTVPKQPAADLAASSTAPAAKEMATGQEAVP---TAGSGVTTVAGKS 238
Query: 2100 PASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEE 2147
A T+ + + G++ + L+
Sbjct: 239 AALVINFTAD------CWIEVTDANGKVLFSGLTKKGDSLTLTGKAPY 280
|
Length = 284 |
| >gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 0.001
Identities = 55/274 (20%), Positives = 98/274 (35%), Gaps = 47/274 (17%)
Query: 1900 PESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTS----------- 1948
E++S+++++PE ES SS +T +S S T S + +
Sbjct: 621 IETDSSSSDSPEDESLPPSSQSPGNTESSKESCASLRTPVCRSSVGSQNDLSKDRLLSPM 680
Query: 1949 ------SPESESTTTSSLV---------------SESTTTSSPESESTTTSSPESESTTT 1987
SP +S SL + P + + ++ + S T
Sbjct: 681 RETELLSPLRDSEERYSLWVKIDLDLLSRIPGHPYKKGVPPKPAEKDSLSAPKKQTSKTA 740
Query: 1988 SSLVS-ESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASE--- 2043
S S + + E+ S SS S S+++ S S S +S
Sbjct: 741 SEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSRNKE 800
Query: 2044 ---------STTTNNPKSESTTTNNPASESITSSS--PASESTTTSSPASESTTTSSPAS 2092
++++PK E + P + TSSS P S S+T SS S ST+
Sbjct: 801 EEMLPSPSSPLSSSSPKPEHPSRKRPRRQEDTSSSSGPFSASSTKSSSKSSSTSKHRKTE 860
Query: 2093 ESTTTSSPASESTTTSSPESESTTTSSPASESTT 2126
+++S + ++ +P S+ P S ++
Sbjct: 861 GKGSSTSKEHKGSSGDTPNKASSFPVPPLSNGSS 894
|
This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 0.001
Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 2/131 (1%)
Query: 2018 SSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTT 2077
S P+ + + T S + +T+ ++ + S+ T
Sbjct: 137 SGPICQRDYNPRDRPKCRCTLRGKDVSCCKEPKTAVTTSKTTSWPTEVSHPTYPSQVTPQ 196
Query: 2078 SSPASESTTTSSPASESTTTSSPASESTTTSS-PESESTTTSSPASESTTIEEQGVSPHS 2136
S PA++ T++ ++T ++ TTTSS PE ++ S S + + + S
Sbjct: 197 SQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSPQHPPSTT-S 255
Query: 2137 EKLSANEDPEE 2147
+ S D +E
Sbjct: 256 QDQSTTGDGQE 266
|
Length = 408 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 0.001
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 2052 SESTTTNNPASESITSSSPASESTTTSSPASE---STTTSSPASESTTTSSPASESTTTS 2108
+E T PA+ + + T S A+E +T T A+ + S SE+ TS
Sbjct: 28 AEEIVTTTPATSTEAEQT-----TPVESDATEEADNTETPVAATTAAEAPSS-SETAETS 81
Query: 2109 SPESESTTTSSPASESTTIEEQGVSPHSE 2137
P SE+T T++ + + T S E
Sbjct: 82 DPTSEATDTTTSEARTVTPAATETSKPVE 110
|
Length = 814 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 0.001
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 401 MSGHTGAVMDLKFSTDGCHIF-TCSTDQTLAVWDL----EKGQRIKK----MKGHSTFVN 451
+ GHT +++DL+F+ I + S D T+ VW++ E + IK +KGH ++
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 452 SCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDN 511
D ++ S D V +WD + +A +N +++S+ +N + +
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGK 189
Query: 512 DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDG-----SYILSNAMD-NTVR---IWDIR 561
+ + D R + H ++ DG +YILS N +R +WD++
Sbjct: 190 HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248
|
Length = 568 |
| >gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 0.001
Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 9/178 (5%)
Query: 1936 TTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSEST 1995
+S E S+ S +T S+ ++ TS+ T S + + T SSL S+
Sbjct: 451 NKTSTVMEPPYGSTESSVPSTPSTRRNDRNITSN------TPSLKRTPNLTKSSL-SQEA 503
Query: 1996 TTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSEST 2055
+ S + +T S TT + S ++ + ++ + S ++ S
Sbjct: 504 SLISKSTGNTHKHSTPRRLTTLPKLPAASRSS-KGNLIRSG-ANGNASSDLSSPGSINSK 561
Query: 2056 TTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESE 2113
+ + STT ++ ST + SP ES T+ +
Sbjct: 562 SPEHSVPLVRVFDIHLRASTTKGRHSTPSTNEKKKRLLKRSPLSPPKESVATTPRLNS 619
|
Length = 619 |
| >gnl|CDD|219927 pfam08601, PAP1, Transcription factor PAP1 | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 0.001
Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 8/164 (4%)
Query: 1999 SPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASEST-TTNNPKSESTTT 2057
+ T + +S VS + +ES +S + + T+ + + + +
Sbjct: 31 GKLPGACGTKNCPIPKLAKNSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKS 90
Query: 2058 NNPASESITSSSPASESTTTSSP------ASESTTTSSPASESTTTSSPASESTTTSSPE 2111
NN A + ++S AS ++ S ++S S + + S+ +SPE
Sbjct: 91 NNRAVDPSANASAASTNSPNGLQSSATQYNSNDNSSSDSPSSGSDGFTNQLLSSLGTSPE 150
Query: 2112 SESTTTSSPASEST-TIEEQGVSPHSEKLSANEDPEEFPNEDVF 2154
+ + AS + +S SA P D
Sbjct: 151 PSTESPPQLASVNNFAAIRNNAESNSNVPSAASSTPNIPGIDFL 194
|
The transcription factor Pap1 regulates antioxidant-gene transcription in response to H2O2. This region is cysteine rich. Alkylation of cysteine residues following treatment with a cysteine alkylating agent can mask the accessibility of the nuclear exporter Crm1, triggering nuclear accumulation and Pap1 dependent transcriptional expression. Length = 344 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 0.001
Identities = 20/185 (10%), Positives = 46/185 (24%), Gaps = 7/185 (3%)
Query: 1940 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSS 1999
+ E+E +V+E ++ E + +V
Sbjct: 849 RPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEE 908
Query: 2000 PESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPA-SESTTTNNPKSESTTTN 2058
TT ++ PV+E I+ + +E ++
Sbjct: 909 VVVVETTHPEVIAA------PVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEA 962
Query: 2059 NPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTS 2118
+E + + A + + + + T + + T
Sbjct: 963 AETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTR 1022
Query: 2119 SPASE 2123
+PA E
Sbjct: 1023 APAPE 1027
|
Length = 1068 |
| >gnl|CDD|144411 pfam00802, Glycoprotein_G, Pneumovirus attachment glycoprotein G | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 9/210 (4%)
Query: 1910 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSS 1969
P + T + + ++ T++ L + ++SP ++STTT + T+ + ++
Sbjct: 62 PTTTPTQQITNQIQNHTSTYLTQHNQLSTSPSNQSTTTPLIHTILDDTTPGTKSTYQHTT 121
Query: 1970 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISP-VSESTTTSSPVSESTTTI 2028
++ TT+ ++ T +S P+ + + V S ++P S
Sbjct: 122 VGTKGRTTTPAQTNKPPTKP--RQSNPPEKPQDDFHFEVFNFVPCSICENNPACLSICKR 179
Query: 2029 SPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTS 2088
PE P TT K + TT T S A+ TS P +T T+
Sbjct: 180 IPE------KKPGKAPTTKPTKKPKPKTTKKDTKTQTTKSKEATTHHPTSEPTKLTTKTN 233
Query: 2089 SPASESTTTSSPASESTTTSSPESESTTTS 2118
+ + T S+ + + +S +T+
Sbjct: 234 TTTPQFTPLSTTTTRNPELTSQMETFHSTN 263
|
This family includes attachment proteins from respiratory synctial virus. Glycoprotein G has not been shown to have any neuraminidase or hemagglutinin activity. The amino terminus is thought to be cytoplasmic, and the carboxyl terminus extracellular. The extracellular region contains four completely conserved cysteine residues. Length = 263 |
| >gnl|CDD|219426 pfam07489, Tir_receptor_C, Translocated intimin receptor (Tir) C-terminus | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 2070 PASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPE-------SESTTTSSPAS 2122
P ++TTT++ +TTT + ++PA +T TS E S +T+S
Sbjct: 56 PVEQTTTTTT---TTTTTHTTVENKPANNTPAQGNTDTSGAEETASSRRSSQASTASTTW 112
Query: 2123 ESTTIEEQGVSPHSE-KLSANEDPEEFPNEDVFEHTFAEIPN 2163
T+ + +P+++ +S N+ E +++ A+ P
Sbjct: 113 SDTSSIDTVDNPYADVGMSRNDSQARNSEEPIYDEVAADSPI 154
|
Intimin and its translocated intimin receptor (Tir) are bacterial proteins that mediate adhesion between mammalian cells and attaching and effacing (A/E) pathogens. A unique and essential feature of A/E bacterial pathogens is the formation of actin-rich pedestals beneath the intimately adherent bacteria and localised destruction of the intestinal brush border. The bacterial outer membrane adhesin, intimin, is necessary for the production of the A/E lesion and diarrhoea. The A/E bacteria translocate their own receptor for intimin, Tir, into the membrane of mammalian cells using the type III secretion system. The translocated Tir triggers additional host signalling events and actin nucleation, which are essential for lesion formation. This family represents the Tir C-terminal domain which has been reported to bind uninfected host cells and beta-1 integrins although the role of intimin binding to integrins is unclear. This intimin C-terminal domain has also been shown to be sufficient for Tir recognition. Length = 222 |
| >gnl|CDD|217330 pfam03035, RNA_capsid, Calicivirus putative RNA polymerase/capsid protein | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 1915 TTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESES 1974
T +P S +TT+ S S+ P S S++ SS S+ST ++ L S S ++SS
Sbjct: 103 TRYWAPNSMATTSYSGGFTSSPVPVPPSSSSSASSVSSQSTQSTGLSSSSYSSSSA---- 158
Query: 1975 TTTSSPESESTTTSSLVSESTTTSSPESES---TTTISPVSESTTTSSPVS 2022
S+ TSS V + P T ++P S + ++S VS
Sbjct: 159 ---------SSRTSSWVRSQNSNLEPFMPGALQTAWVTPPSSTASSSGTVS 200
|
Length = 226 |
| >gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (97), Expect = 0.002
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 1866 NYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESEST 1925
N S + TT+ +T ++ST + ++ TT +P TT+N + + TT T
Sbjct: 56 NQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVP---TTSNASTINVTTKVTAQNIT 112
Query: 1926 TTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESEST 1985
T + T TS+ + + TT S STT+++ + TT +P S TS+ +
Sbjct: 113 ATEA----GTGTSTGVTSNVTT---RSSSTTSATTRITNATTLAPTLSSKGTSNATKTTA 165
Query: 1986 TTSSLVSESTTTSS 1999
++ E + S
Sbjct: 166 ELPTVPDERQPSLS 179
|
Length = 234 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 2009 SPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASE-SITS 2067
+ V+ S TTS P S T S+ T S PA++ T ++T ++ + TS
Sbjct: 170 TAVTTSKTTSWPTEVSHPTY--PSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTS 227
Query: 2068 SSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTI 2127
S+P ++ S S + P S T+S STT E + PA+ +
Sbjct: 228 SNPEPQTEPPPSQRGPSGSPQHPPS----TTSQDQ-STTGDGQEHTQRRKTPPATSNRRS 282
Query: 2128 EEQGVSP 2134
+P
Sbjct: 283 PHSTATP 289
|
Length = 408 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.002
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 1120 LLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWD--ADNFERIVTLHFFISLYGH--KLP 1174
LL E + V F P FT S+DG + W + + ++ + L GH K+
Sbjct: 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPI-VHLQGHTKKVG 129
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
++S S + L + G+ D V VW ++ G + + H D +T + + TTSK
Sbjct: 130 IVSFHPSAMNVLASAGA-DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK 188
Query: 1235 DGRVKQWD 1242
D ++ D
Sbjct: 189 DKKLNIID 196
|
Length = 493 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 192 TGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+G+ KT+ H V V + YL SGS+D +K+W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.002
Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 18/172 (10%)
Query: 1994 STTTSSPESESTTTISPV-SESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKS 2052
S ES++ PV ++ T +P P P S T + K
Sbjct: 325 SQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEE--PPQPKAVVPRPLSPYTAYEDLKP 382
Query: 2053 ESTTTNNPASESITSSSP----ASESTTTSSPASESTTT---SSPASESTTTSSPASEST 2105
++ P S S SS A + P+ S + PA + P S
Sbjct: 383 PTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYA 442
Query: 2106 --------TTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEFP 2149
T+ SP + + + S +S S+ +P + A P
Sbjct: 443 RYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANM 494
|
Length = 576 |
| >gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.002
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 2062 SESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPA 2121
++ T +T TS+P T S PAS ++ S+ + + SP ES T ++P
Sbjct: 77 PKTGTGKVAPPAATPTSAPTP---TPSPPASPASGMSAAPASAVEEKSPSEESATATAPE 133
Query: 2122 SESTTIEEQGVSPHS 2136
S ST++ G S
Sbjct: 134 SPSTSVPSSGSDAAS 148
|
All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378 |
| >gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.002
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 1882 VVMSTLNSLLSENTTTN--SPESESTTTNNPESESTTTSSPESESTTT-SSLVSESTTTS 1938
VVM + + +P S T T +P + + S S S ES T +
Sbjct: 71 VVMVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATAT 130
Query: 1939 SPESESTTTSSPESESTTT 1957
+PES ST+ S S++ +T
Sbjct: 131 APESPSTSVPSSGSDAAST 149
|
All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378 |
| >gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.002
Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 32/232 (13%)
Query: 1892 SENTTTNSPESESTTTNNPE--------SESTTTSSP---ESESTTTSSLVSESTTTSSP 1940
S T P SEST T P+ +EST+T+S +SE ++T +L S T+TSS
Sbjct: 93 SSEPTPAPPSSESTATRTPDPNQQALESTESTSTTSADCNDSEQSSTPNLNSSDTSTSSS 152
Query: 1941 ESESTTTS----SPESESTTTSSLVSESTT---TSSPESESTTTSSPE------------ 1981
+ +T+ SP S++ S + T S E + + PE
Sbjct: 153 GALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAAPQAKPELPKKKQAMFTLG 212
Query: 1982 -SESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSP 2040
S + ++ P+ S P S + +S ++ + T +
Sbjct: 213 GSSGDDDEDSFEDRMSSQDPKRSSLPKPKPKMFQLGGSDELGKSLPSLMSPRKKTASFKE 272
Query: 2041 ASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPAS 2092
+ T S+ E S A E S +S S +S
Sbjct: 273 QVVTRTFPERTSDDDEDAIETEEDDVDES-AIEDDDDDSDWEDSVEESGRSS 323
|
This family is conserved in fungi but the function is not known. Length = 509 |
| >gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 31/218 (14%), Positives = 70/218 (32%), Gaps = 17/218 (7%)
Query: 1939 SPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTS 1998
+P + S+ ++ +S + ++ P +T+ + SL S+T +
Sbjct: 22 APSTSSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAEQTAGNTQQDVSLPPISSTPT 81
Query: 1999 SPESESTT--------------TISPVSESTTTSSPVSESTTTISPESESTTTSSPASES 2044
++ T ++ ++ ST P + + + AS
Sbjct: 82 QGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQ 141
Query: 2045 TTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASES 2104
T TT PA + ++T + P + + +E +
Sbjct: 142 TAKTQTAERPATTR-PARKQAVIEPKKPQATAKTEP--KPVAQTPKRTEPAAPVASTKAP 198
Query: 2105 TTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSAN 2142
TS+P + T T++P ++ + K + N
Sbjct: 199 AATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGN 236
|
Length = 328 |
| >gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.002
Identities = 39/241 (16%), Positives = 72/241 (29%), Gaps = 21/241 (8%)
Query: 1913 ESTTTSSPESESTTTSSLVSESTTTSSPES-----ESTTTSSPESESTTTSSLVSESTTT 1967
+S T +P SE T S + S + + T S +SE S ++ +T
Sbjct: 72 DSKTVPTPVSEPNITRSFQEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKST 131
Query: 1968 SSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTT 2027
SS + + + + P +++ S+ T +S T + VS+S
Sbjct: 132 SSKDGKGSKKTQPGVSTSSGSTTSGTDLNTK----QSQTGLGASGSHAQQDPAVSQSGVV 187
Query: 2028 ISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTT 2087
P P +P S+ + E T
Sbjct: 188 GVPGLGVPGVGVPGGGGAGALPGVGVGRAGVSPGVGVGGLGGVPGVGILASNTSREGQTQ 247
Query: 2088 SSPASESTTTSS------------PASESTTTSSPESESTTTSSPASESTTIEEQGVSPH 2135
+ ++ S +T+ P +TTT+ +S + G S
Sbjct: 248 DDQERDGDGRVIEPGVGLPGVRVGDSTSSPSTTRPSGSTTTTTPASSGPSAPGGPGSSSR 307
Query: 2136 S 2136
+
Sbjct: 308 N 308
|
This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in cattle. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies. Length = 727 |
| >gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.002
Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 28/193 (14%)
Query: 1940 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSS 1999
P ES TS P S LV+ + + P + T S++T V +S +SS
Sbjct: 22 PAGESPRTSKP-------SPLVTLESAITQPSKDPFKTVGALSKATK----VWKSAVSSS 70
Query: 2000 PESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNN 2059
+S T +PVSE T S +S ESE N +++ T +
Sbjct: 71 --DDSKTVPTPVSEPNITRS----FQEPVSQESE-----------VQDNTEQNQDTKGSK 113
Query: 2060 PASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSS 2119
SE S ++ +TSS + + + P +++ S+ + T ++ + S
Sbjct: 114 TDSEEDDDDSEEEDNKSTSSKDGKGSKKTQPGVSTSSGSTTSGTDLNTKQSQTGLGASGS 173
Query: 2120 PASESTTIEEQGV 2132
A + + + GV
Sbjct: 174 HAQQDPAVSQSGV 186
|
This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in cattle. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies. Length = 727 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 0.002
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 2009 SPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSS 2068
+P S ++T + + S TT S +S ST + S + + S S +S
Sbjct: 565 NPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPAS 624
Query: 2069 SPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSS 2119
S STT SSP S S+ T+SP S S+ S S + S
Sbjct: 625 HLGSPSTTPSSPESSIKVASTE------TASPESSIKVASTESSVSMVSMS 669
|
Length = 670 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 0.002
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
Query: 1977 TSSPESESTTTSSLVSESTTTSSPESESTTTISPVS--ESTTTSSPVSESTTTISPESES 2034
+P S ++T + + S TT S +S ST ++P + + SP + + +SP
Sbjct: 563 AGNPGSTNSTPTGSAASSNTTFSSDSPSTV-VAPSTSPPAGHLGSPPATPSKIVSPS--- 618
Query: 2035 TTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASES 2094
TS PAS + S STT ++P S +S+ T+SP S S+ +S S
Sbjct: 619 --TSPPAS------HLGSPSTTPSSPESSIKVASTE------TASPESSIKVASTESSVS 664
Query: 2095 TTTSS 2099
+ S
Sbjct: 665 MVSMS 669
|
Length = 670 |
| >gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 0.002
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 1849 LLISMLAATAVAISVIDNYSEIIFTTNNNS-ESTVVMSTLNSLLSENTTTNSPESESTTT 1907
+ +++ TA + EI+ TT S E+ + E T +P + +T
Sbjct: 11 VALTLALLTASN-PKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAA 69
Query: 1908 NNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTT 1946
P S T +S + S T + SE+ T + +E++
Sbjct: 70 EAPSSSETAETSDPT-SEATDTTTSEARTVTPAATETSK 107
|
Length = 814 |
| >gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612 | Back alignment and domain information |
|---|
Score = 43.5 bits (101), Expect = 0.002
Identities = 37/203 (18%), Positives = 76/203 (37%), Gaps = 20/203 (9%)
Query: 1961 VSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSP 2020
V + +++ +T +P E + ++ + +PE + T T +P +
Sbjct: 153 VKAEKAEKAEKTKKASTPAPVEEEIVVKKVANDRSAAPAPEPK-TPTNTPAEPAEQVQEI 211
Query: 2021 VSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSP 2080
+ +SES T++PAS PK T P ++ ++ S
Sbjct: 212 TGKKNKKNKKKSESEATAAPASVEQVVEQPK---VVTEEPHQQAAPQEKKNKKNKRKSES 268
Query: 2081 ASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEK-- 2138
+ + +P T+ PASE+ + + + + + E Q +P S+K
Sbjct: 269 ENVPAASETPVEPVVETTPPASENQKKNKKDKKKSESEKVVEEPV----QAEAPKSKKPT 324
Query: 2139 ----------LSANEDPEEFPNE 2151
++A E+P++ P E
Sbjct: 325 ADDNMDFLDFVTAKEEPKDEPAE 347
|
This family includes several uncharacterized proteins from Caenorhabditis elegans. Length = 517 |
| >gnl|CDD|114205 pfam05467, Herpes_U47, Herpesvirus glycoprotein U47 | Back alignment and domain information |
|---|
Score = 43.3 bits (101), Expect = 0.002
Identities = 64/279 (22%), Positives = 107/279 (38%), Gaps = 24/279 (8%)
Query: 1839 LSVSPYITNNLLISMLAATAVAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTN 1898
+++S + +NL S+ T + NY+ ++ N+ S + S N
Sbjct: 166 MAISKFSNSNLTRSLTPFTP---EIFFNYTSFVYFLLYNTTS-CIPSNDQYFEHSPKPIN 221
Query: 1899 SPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTS 1958
S N +S TTT S ST S + +SP ST +PE
Sbjct: 222 VTTSFGRAIVNFDSILTTTPSSTPSST--------SASITSPHIPSTNIPTPE------P 267
Query: 1959 SLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTS 2018
V+++ T ++ T ++P + TT S+ + P T T P +
Sbjct: 268 PPVTKNFTELHTDTIKVTPNTPTITAQTTESIKKIVKRSDFPRPMYTPTDIPTLTIRLNA 327
Query: 2019 SPVSESTTTISPESESTTTSSPASESTTTNNPKS-ESTTTNNPASESITSSSPASESTTT 2077
+ +E T E+ + E+TT P++ ES T A++ I S++ A TT
Sbjct: 328 TIKTEQNTENPTENPKSPPKPTNFENTTIRIPETFESATVATNATQKIESTTFA---TTI 384
Query: 2078 SSPASESTTTSSPASESTTTSSPASESTTTSSPESESTT 2116
SSP + S S+ +TT ++E TT
Sbjct: 385 GIEEINDNIYSSPKNSIYLKSK--SQQSTTKFTDAEHTT 421
|
Length = 627 |
| >gnl|CDD|114205 pfam05467, Herpes_U47, Herpesvirus glycoprotein U47 | Back alignment and domain information |
|---|
Score = 42.9 bits (100), Expect = 0.002
Identities = 60/292 (20%), Positives = 121/292 (41%), Gaps = 25/292 (8%)
Query: 1877 NSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTT------TSSL 1930
N +S + + ++ S + + SP ST PE T + E + T T ++
Sbjct: 232 NFDSILTTTPSSTPSSTSASITSPHIPSTNIPTPEPPPVTKNFTELHTDTIKVTPNTPTI 291
Query: 1931 VSESTTTSSPESESTTTSSPESESTTTSSL-VSESTTTSSPESESTTTSSPESESTTTSS 1989
+++T + + + P T +L + + T + ++ T +P+S T+
Sbjct: 292 TAQTTESIKKIVKRSDFPRPMYTPTDIPTLTIRLNATIKTEQNTENPTENPKSPPKPTN- 350
Query: 1990 LVSESTTTSSPESESTTTISPVS----ESTT--TSSPVSESTTTISPESESTTTSSPASE 2043
E+TT PE+ + T++ + ESTT T+ + E I +++ S+
Sbjct: 351 --FENTTIRIPETFESATVATNATQKIESTTFATTIGIEEINDNIYSSPKNSIYLKSKSQ 408
Query: 2044 STTTNNPKSEST------TTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTT 2097
+TT +E T TT A+ + S + ++ T + +++ + T +
Sbjct: 409 QSTTKFTDAEHTTPILKFTTWQDAARTYMSHNTEVQNMTDRFQRTTLKSSNELPTIQTLS 468
Query: 2098 SSPASE--STTTSSPESESTTTSSPASEST-TIEEQGVSPHSEKLSANEDPE 2146
+P + S T+ E T + P+S S+ +I E P ++SA+ E
Sbjct: 469 VTPKKKLPSNVTAKTEVHITNNALPSSNSSHSITEVTEEPKHNRMSASTHEE 520
|
Length = 627 |
| >gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 2018 SSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTT 2077
S+ +S+++ P STTT + + +T TN+ T+ +PA +
Sbjct: 151 SAELSQNSGQSVPLDTSTTTDPATTPAPAAPVD---TTPTNSQTPAVATAPAPAVDPQQN 207
Query: 2078 SSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPAS 2122
+ A S A+ + + + +T +
Sbjct: 208 AVVAP-SQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
|
Length = 331 |
| >gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.002
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 1911 ESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSP 1970
++ STT SS SS TT + E+ ES + S +E T P
Sbjct: 2 DNSSTTLSS-----IILSSSTLSPTTFFTIETSM-------DESKSIISTFTEIIPTEIP 49
Query: 1971 ESESTTTSSPESESTTTSS 1989
SES + +S S S+++SS
Sbjct: 50 TSESPSPNSNSSSSSSSSS 68
|
Length = 417 |
| >gnl|CDD|224343 COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 17/132 (12%)
Query: 1970 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTIS 2029
P + + + S+++ SL + STT S E TT+ SP S +T+ + V+ ++
Sbjct: 134 PPTLPDQSVASVSQNSQDVSLATSSTTPS----EGTTSASPSSATTSFTPTVTAIAPVVA 189
Query: 2030 P-ESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTS 2088
P T PA++ + ST + + P + S +
Sbjct: 190 PTAKPVTVPKQPAADLAAS------STAPAAKEMATGQEAVPTAGS------GVTTVAGK 237
Query: 2089 SPASESTTTSSP 2100
S A T+
Sbjct: 238 SAALVINFTADC 249
|
Length = 284 |
| >gnl|CDD|144411 pfam00802, Glycoprotein_G, Pneumovirus attachment glycoprotein G | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.002
Identities = 39/206 (18%), Positives = 75/206 (36%), Gaps = 24/206 (11%)
Query: 1961 VSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSP 2020
+S + +P + T + + ++ T++ L + ++SP ++STTT + T+
Sbjct: 53 ISSANHKVTPTTTPTQQITNQIQNHTSTYLTQHNQLSTSPSNQSTTTPLIHTILDDTTPG 112
Query: 2021 VSESTTTISPESESTTTSSPASESTTTNNPKSE-------------------STTTNNPA 2061
+ + ++ TT+ + T +S S NNPA
Sbjct: 113 TKSTYQHTTVGTKGRTTTPAQTNKPPTKPRQSNPPEKPQDDFHFEVFNFVPCSICENNPA 172
Query: 2062 SESI----TSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTT 2117
SI P TT + + TT TT S A+ + +S ++ TT
Sbjct: 173 CLSICKRIPEKKPGKAPTTKPTKKPKPKTTKKDTKTQTTKSKEAT-THHPTSEPTKLTTK 231
Query: 2118 SSPASESTTIEEQGVSPHSEKLSANE 2143
++ + T + + E S E
Sbjct: 232 TNTTTPQFTPLSTTTTRNPELTSQME 257
|
This family includes attachment proteins from respiratory synctial virus. Glycoprotein G has not been shown to have any neuraminidase or hemagglutinin activity. The amino terminus is thought to be cytoplasmic, and the carboxyl terminus extracellular. The extracellular region contains four completely conserved cysteine residues. Length = 263 |
| >gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 5/129 (3%)
Query: 2016 TTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASEST 2075
T PV+E ++ ++ S++ + +P ++ PA+E+ + A
Sbjct: 63 TCQQPVTEDGAA-GDDAGDGAEATAPSDAGSQASPDDDAQ----PAAEAEAADQSAPPEA 117
Query: 2076 TTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPH 2135
+++S E+ T + + +P + + E S P S +
Sbjct: 118 SSTSATDEAATDPPATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHV 177
Query: 2136 SEKLSANED 2144
+ L A +
Sbjct: 178 AGTLQAARE 186
|
Length = 226 |
| >gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 22/147 (14%), Positives = 55/147 (37%), Gaps = 16/147 (10%)
Query: 2001 ESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNP 2060
++ + S++ + +SP ++ + E+E+ S+P S+T+ ++ +
Sbjct: 77 DAGDGAEATAPSDAGSQASPDDDAQP--AAEAEAADQSAPPEASSTSATDEAATDPPATA 134
Query: 2061 ASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSP 2120
A+ + P ++ T S T ++ A + T +
Sbjct: 135 AARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTLQA----------- 183
Query: 2121 ASESTTIEEQGVSPHSEKLSANEDPEE 2147
A ES + ++ + + +A +DP
Sbjct: 184 ARESL---VETLARFARRAAATDDPRR 207
|
Length = 226 |
| >gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 27/174 (15%), Positives = 67/174 (38%), Gaps = 6/174 (3%)
Query: 1923 ESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTS-SPESESTTTSSPE 1981
+S++ S S S +++ ES+S ++S+ + S ES ++ +
Sbjct: 125 DSSSPSDFSSFSASSTRTVDSVDDRLDSESQSRSSSASLGNSNRPDDELNVESFQSTGSK 184
Query: 1982 SESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPA 2041
S T++ ++ S + ++ S + T S S++ S ++ + P
Sbjct: 185 PRSLTSTKSNKDNLLNSELLTLNSLLSSNSEVGSGTKSR-SDAQEKSSTKATESVKPGPV 243
Query: 2042 SESTTTNNPKSESTTTNNPASESITSSSPA----SESTTTSSPASESTTTSSPA 2091
+ S+T++ P + + T+ + + + S+ T++ A
Sbjct: 244 NTSSTSSLPPAIKRSPVQQLESFTTTPVYFPVNTPATFDATLKSYYSSLTANIA 297
|
Length = 319 |
| >gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 6/173 (3%)
Query: 1943 ESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTS-SLVSESTTTSSPE 2001
+S++ S S S +++ V ES+S ++S+ S L ES ++ +
Sbjct: 125 DSSSPSDFSSFSASSTRTVDSVDDRLDSESQSRSSSASLGNSNRPDDELNVESFQSTGSK 184
Query: 2002 SESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPA 2061
S T+ ++ S ++ ++ S + T S + ++ K+ + P
Sbjct: 185 PRSLTSTKSNKDNLLNSELLTLNSLLSSNSEVGSGTKSRSDAQEKSST-KATESVKPGPV 243
Query: 2062 SESITSSSPASESTTTSSPASESTTTSSPA----SESTTTSSPASESTTTSSP 2110
+ S TSS P + + TTT + + + S+ T++
Sbjct: 244 NTSSTSSLPPAIKRSPVQQLESFTTTPVYFPVNTPATFDATLKSYYSSLTANI 296
|
Length = 319 |
| >gnl|CDD|236652 PRK10118, PRK10118, flagellar hook-length control protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.002
Identities = 36/216 (16%), Positives = 64/216 (29%), Gaps = 22/216 (10%)
Query: 1901 ESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSL 1960
TT S + ++ V E+ + E ++ +P + TS+L
Sbjct: 63 SKGLLTTKGEPLVSDKLADLLAQQANLLIPVDETLPVITDEQSLSSPLTP---ALKTSAL 119
Query: 1961 VSESTTTSSPESESTTTSSPESESTTTSSLV------SESTTTSSPESESTTTISPVSES 2014
+ S E + + + + S+L +T + S P +
Sbjct: 120 AALSKNAQKDEKADDLS---DEDLASLSALFAMLPGQDNTTPVADAPSTVLPAEKPTLLT 176
Query: 2015 TTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASES 2074
S + T T S S TT P T P + + +E
Sbjct: 177 KDMPSAPQDETHT---LSSDEHEKGLTSAQLTTAQPDDAPGTPAQPLTPLAAEAQAKAEV 233
Query: 2075 TTTSSPASESTTTSSPASESTTTSSPASESTTTSSP 2110
+T SP + A+ T T T ++P
Sbjct: 234 ISTPSP-------VTAAASPTITPHQTQPLPTAAAP 262
|
Length = 408 |
| >gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.002
Identities = 44/259 (16%), Positives = 84/259 (32%), Gaps = 17/259 (6%)
Query: 1878 SESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTT--TSSLVSEST 1935
+ S + L +NT+T+ + T+ P + +S ++ + SSL +T
Sbjct: 284 NSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSGTKDSLWSPSSLCGMAT 343
Query: 1936 TTSS-PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSES 1994
SS S + SP S + ES +T+ P + + +
Sbjct: 344 PPSSIGMSPLILSLSPSHLSGRAPGTTGSGKGEPASESTPSTSPPPPGLADDIVRAIFAT 403
Query: 1995 TTTSSPESESTTTIS--PVSESTTTSSPVSESTT------TISPESESTTTSSPASESTT 2046
++ S+P E S P + +S ++ E T S
Sbjct: 404 SSRSAPRKEELQNESSFPKLVRQENLQNIEKSAEGGILDAAVTEELLKLTNEKDDLGSRG 463
Query: 2047 TNNPKSESTTT----NNPASESITSSSPASESTTTSSPASEST--TTSSPASESTTTSSP 2100
++P S T N E + S+ + + S+ + T ++
Sbjct: 464 LDSPFSRDTLLGSQRNKAQPELLVSTPDKGPAESQSAANLRVSWFTPIENPMREEKSAPA 523
Query: 2101 ASESTTTSSPESESTTTSS 2119
+ E TS ES + +
Sbjct: 524 SEEDEQTSLEESLISPSPC 542
|
This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667 |
| >gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II) | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.002
Identities = 49/224 (21%), Positives = 74/224 (33%), Gaps = 31/224 (13%)
Query: 1937 TSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTT 1996
+ S E SS E TS+ ++ +S+ E+E+TT S T
Sbjct: 48 SDSSEENGDGDSSEEEGEEETSN-----EEENNEDSDGNEDEEAEAENTTLS------TV 96
Query: 1997 TSSPESESTTTIS---------PVSESTTTSSPVSESTTTISPESESTTTSSPAS---ES 2044
T ++T P E + E E A
Sbjct: 97 TLGYGGDATPGTGNIGLAALQLPKKAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEENE 156
Query: 2045 TTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASES 2104
TN + ST ++ S + E + + +E TT + P TT+SP
Sbjct: 157 QGTNGTSTNSTEVDHGNGSSGGDNGEEGEEESVTEAEAEGTTVAGP-----TTTSPNGGF 211
Query: 2105 TTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEF 2148
T+ P+ TT P + TT E QG E+ ANE +
Sbjct: 212 QPTTPPQEVYGTTDPPFGKVTTPEYQG---EYEQTGANEYDGGY 252
|
Bone sialoprotein (BSP) is a major structural protein of the bone matrix that is specifically expressed by fully-differentiated osteoblasts. The expression of bone sialoprotein (BSP) is normally restricted to mineralised connective tissues of bones and teeth where it has been associated with mineral crystal formation. However, it has been found that ectopic expression of BSP occurs in various lesions, including oral and extraoral carcinomas, in which it has been associated with the formation of microcrystalline deposits and the metastasis of cancer cells to bone. Length = 291 |
| >gnl|CDD|213932 TIGR04319, SerAla_Lrha_rpt, surface protein repeat Ser-Ala-175 | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 16/187 (8%)
Query: 1934 STTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSE 1993
ST +S S + SS S SL S + T SS + S T+S S S S+ S
Sbjct: 2 STASSVASSANAVASSAASRFPDNQSLASLAKTASS--ANSVTSSYAASASADASAASSL 59
Query: 1994 STTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSE 2053
+T SS SS S++ + ++ + +S S +N S
Sbjct: 60 ATKVSSANK-------------AASSAASQANSALAAGNLDAASSYANQASKAASNASSL 106
Query: 2054 STTTNNPASESITSSSPASESTT-TSSPASESTTTSSPASESTTTSSPASESTTTSSPES 2112
+ N+ AS++++ + AS + SS AS + T + + + S AS ++ +S S
Sbjct: 107 ADKANSAASKALSEALQASSAAAIASSAASSAATLAGSLASANDAKSDASAASDAASSAS 166
Query: 2113 ESTTTSS 2119
+++S
Sbjct: 167 VVASSAS 173
|
This serine and alanine-rich surface protein repeat, about 175 amino acids long, occurs up to nine times in surface proteins of some Lactobacillus strains, particularly in Lactobacillus rhamnosus. Members proteins have the N-terminal variant signal sequence described by TIGR03715 and C-terminal LPXTG signals for surface attachment by sortase. Length = 175 |
| >gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 1912 SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPE 1971
S ++T+SS E+ +T+ + S T + S T+ ++++T ++ +T S P
Sbjct: 26 SGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQPH 85
Query: 1972 SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISP 2010
S TT T T SL+S S + TT++
Sbjct: 86 SHETTI-------TCTKSLIS-VPYYKSVDMNCTTSVGV 116
|
Length = 486 |
| >gnl|CDD|113196 pfam04415, DUF515, Protein of unknown function (DUF515) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 2051 KSESTTTNN--PASESITSSSPASESTTTSSPASESTTTSSPASESTTTS-SPASESTTT 2107
K T + I SS SES + S+ S S++TSS S ST+ S AS +
Sbjct: 257 KQNGTIFYEIVDSGYVILSSISVSESQSQSTSTSSSSSTSSSESSSTSYSPGDASIQNSQ 316
Query: 2108 SSPESESTTTSSPASESTTI 2127
S ST+ S S S++
Sbjct: 317 RSQLQSSTSQSESESASSSY 336
|
Family of hypothetical Archaeal proteins. Length = 416 |
| >gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 32/231 (13%), Positives = 67/231 (29%), Gaps = 17/231 (7%)
Query: 1950 PESESTTTSSLVSESTTTSSPESESTT-TSSPESESTTTSSLVSESTTTSSPESESTTTI 2008
+ T S +S S + T S+ + S ++ + ST
Sbjct: 105 AKDSQFTVVSQAKKSPPASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTIQQ 164
Query: 2009 SPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSS 2068
SP + + S S + S S +S + S ++P + ++ + T
Sbjct: 165 SPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSGNRSNLRSSPWALRSSG--DKKDITTDE 222
Query: 2069 SP-----ASESTTTSSPASEST--TTSSPASESTTTSSPASESTTTSSPESESTTTSSPA 2121
A S + T S +SSP+ + + ++ ++ +
Sbjct: 223 KYLETFLAEVDEEQHMITSSAGKNATPPETINSFGSSSPSFWNYSRNASDAARSLKKRSY 282
Query: 2122 SESTTIEEQGVSPHSEKLSANEDPEEFPNEDVFEHTFAEIPNIDHSNQTDE 2172
S P +K A+ P++ E + +
Sbjct: 283 QLS-----PSPVPSKQK--ASTSPKKGEGEPPNMSLESASEVFKRVGVLPQ 326
|
Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins. Length = 559 |
| >gnl|CDD|221548 pfam12361, DBP, Duffy-antigen binding protein | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 7/196 (3%)
Query: 1894 NTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESE 1953
T+NS SEST N + T S+ ++ + LV++ P +++ S S
Sbjct: 95 LGTSNSRPSESTVEANSPGDGTVNSASIPVVSSENPLVTKHKGLE-PSKDNSDNSGSASH 153
Query: 1954 STTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTIS---- 2009
+ + S + S+ + E T E T + S TSS +STT++
Sbjct: 154 ALAGENGESMAGPDSNSKGE-TADPQDNIEVKATKDSSNRSDGTSSATGDSTTSVDRAIN 212
Query: 2010 -PVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSS 2068
V E S + S + T + S + N ++ N P S + +
Sbjct: 213 KGVPEDGDKSVGSKRAENEDSSAEKDGATVAGGSTNDPEQNVSVDTDNGNVPGSGNKQNE 272
Query: 2069 SPASESTTTSSPASES 2084
+ S S ++ES
Sbjct: 273 GATALSGAESLESNES 288
|
This family of proteins is found in eukaryotes. Proteins in this family are typically between 449 and 1061 amino acids in length. The family is found in association with pfam05424. There are two conserved sequence motifs: NKNGG and QKHDF. This family is part of the Duffy-antigen binding protein of Plasmodium spp. This protein is an antigen on these parasites which enable them to invade erythrocytes. Length = 318 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 40.2 bits (93), Expect = 0.003
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 1905 TTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSES 1964
T + ++ + E +S TT++ +TTT+ P + +TTT++ + +TTT+
Sbjct: 24 TAQGEGQYDAAVVEAAEGQSQTTTT----TTTTTPPTTTTTTTTTTTTITTTTT------ 73
Query: 1965 TTTSSPESESTTTSSPESES-TTTSSLVSESTTTSSPESESTTTISPVS 2012
TT++ + +TTT++ E+ S TT+S +T T +P S S S
Sbjct: 74 KTTTTTTTTTTTTTTTEAPSKNTTTSEAPTTTDTRAPSSIREIDGSLGS 122
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 40.2 bits (93), Expect = 0.003
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 1935 TTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSES 1994
T + ++ + E +S TT++ TTT++P + +TTT++ + TTT++ +
Sbjct: 24 TAQGEGQYDAAVVEAAEGQSQTTTT-----TTTTTPPTTTTTTTTTTTTITTTTT--KTT 76
Query: 1995 TTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPAS 2042
TTT++ + +TTT +P +TT+ +P +T T +P S S S
Sbjct: 77 TTTTTTTTTTTTTEAPSKNTTTSEAPT--TTDTRAPSSIREIDGSLGS 122
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 1951 ESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISP 2010
S S +T SL+S SP S S T EST + S + E S S S P
Sbjct: 1 LSCSDSTRSLLSPLGNELSP-SSSDETEDCSEESTDSWSDMYEGLKDSESSSNSV----P 55
Query: 2011 VSESTTTSSPVSESTTT 2027
++T+S +S+S+T
Sbjct: 56 SLSLSSTASSLSDSSTY 72
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|177546 PHA03151, PHA03151, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 0.003
Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 6/199 (3%)
Query: 1920 PESESTTTSSLVSESTTTSSPESESTTTSSPES--ESTTTSSLVSESTTTSSPESESTTT 1977
P E +T S +++ ++S E T+S +S ST S E + T + +
Sbjct: 39 PTDEDDSTPSENTKAESSSIDEDGLLTSSGSDSVFNSTDYEST-PEPSKTPGFSDSNVSD 97
Query: 1978 SSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTT 2037
S+ + + S+ SS T+ +S E+ SS + + T
Sbjct: 98 SNNDKDFDFKPQDEDTSSDDSSAPDFITSLVSSDCEARGLSSSEEDGEPYSKQKMSQPLT 157
Query: 2038 SSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSS---PASES 2094
+E T+ +++ + + + + + ++S P +S
Sbjct: 158 IDAKTEEITSEEDCCVQEDSSDSEEDVVEAFIRQRAQMAGKKKKGKRSISTSDDEPPRKS 217
Query: 2095 TTTSSPASESTTTSSPESE 2113
S++T S + E
Sbjct: 218 RRKRHSHRISSSTDSDDEE 236
|
Length = 259 |
| >gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.003
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 2004 STTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASE 2063
S+TT+S + S++T SP + T S ES + S +E T P SES + N+ +S
Sbjct: 4 SSTTLSSIILSSSTLSPTTFFTIETS-MDESKSIISTFTEIIPTEIPTSESPSPNSNSSS 62
Query: 2064 SITSSSPA 2071
S +SSS +
Sbjct: 63 SSSSSSSS 70
|
Length = 417 |
| >gnl|CDD|217330 pfam03035, RNA_capsid, Calicivirus putative RNA polymerase/capsid protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE 1951
S TT+ S S+ P S S++ SS S+ST ++ L S S ++SS
Sbjct: 110 SMATTSYSGGFTSSPVPVPPSSSSSASSVSSQSTQSTGLSSSSYSSSSA----------- 158
Query: 1952 SESTTTSSLVSESTTTSSPESES---TTTSSPESESTTTSSLVS 1992
S+ TSS V + P T +P S + ++S VS
Sbjct: 159 --SSRTSSWVRSQNSNLEPFMPGALQTAWVTPPSSTASSSGTVS 200
|
Length = 226 |
| >gnl|CDD|213932 TIGR04319, SerAla_Lrha_rpt, surface protein repeat Ser-Ala-175 | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 1944 STTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESE 2003
ST +S S + SS S S S + T SS S TSS + ++ +S S
Sbjct: 2 STASSVASSANAVASSAASRFPDNQSLASLAKTASSANS---VTSSYAASASADASAASS 58
Query: 2004 STTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPA-- 2061
T +S S + SS S++ + ++ + +S S +N S + N+ A
Sbjct: 59 LATKVS--SANKAASSAASQANSALAAGNLDAASSYANQASKAASNASSLADKANSAASK 116
Query: 2062 --SESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTT 2117
SE++ +SS A+ +++ +S A+ + + A+++ + +S AS++ +++S + S +T
Sbjct: 117 ALSEALQASSAAAIASSAASSAATLAGSLASANDAKSDASAASDAASSASVVASSAST 174
|
This serine and alanine-rich surface protein repeat, about 175 amino acids long, occurs up to nine times in surface proteins of some Lactobacillus strains, particularly in Lactobacillus rhamnosus. Members proteins have the N-terminal variant signal sequence described by TIGR03715 and C-terminal LPXTG signals for surface attachment by sortase. Length = 175 |
| >gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.003
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 1932 SESTTTSSPESESTT----TSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTT 1987
S ++T+SS E+ + S+P + + TTS+L S T + + + T S S
Sbjct: 26 SGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQPH 85
Query: 1988 SSLVSESTTTSSPESESTTTISPVSESTTTSSPVSES 2024
S E+T T + S V + TTS V+ S
Sbjct: 86 S---HETTITCTKSLISVPYYKSVDMNCTTSVGVNYS 119
|
Length = 486 |
| >gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.003
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 2061 ASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSP 2120
AS + TSSS + +T+ S T + S T+ ++++T ++ +T S P
Sbjct: 25 ASGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQP 84
Query: 2121 ASESTTI 2127
S TTI
Sbjct: 85 HSHETTI 91
|
Length = 486 |
| >gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.003
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 1942 SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPE 2001
S ++T+SS E+ +T+ + S T + S T+ ++++T ++ +T S P
Sbjct: 26 SGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQPH 85
Query: 2002 SESTTTISPVSESTTTSSPVSES-----TTTISP 2030
S TT + S P +S TT++
Sbjct: 86 SHETTI---TCTKSLISVPYYKSVDMNCTTSVGV 116
|
Length = 486 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.003
Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 2/123 (1%)
Query: 2014 STTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASE 2073
+T +P + + + A N S + + ++ S AS
Sbjct: 420 ATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASA 479
Query: 2074 STTTSSPAS--ESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQG 2131
+ + P + E ++ S +T + P + + +S E + PA E+
Sbjct: 480 PASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAA 539
Query: 2132 VSP 2134
+P
Sbjct: 540 AAP 542
|
Length = 830 |
| >gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.004
Identities = 50/260 (19%), Positives = 96/260 (36%), Gaps = 27/260 (10%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTS--- 1948
+++++++SPE ES ++ +T +S S T S + + + +
Sbjct: 623 TDSSSSDSPEDESLPPSSQSPGNTESSKESCASLRTPVCRSSVGSQNDLSKDRLLSPMRE 682
Query: 1949 ----SPESESTTTSSLV---------------SESTTTSSPESESTTTSSPESESTTTSS 1989
SP +S SL + P + + ++ + S T S
Sbjct: 683 TELLSPLRDSEERYSLWVKIDLDLLSRIPGHPYKKGVPPKPAEKDSLSAPKKQTSKTASE 742
Query: 1990 LVS-ESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTN 2048
S + + E+ S SS S S+++ S S S +S +
Sbjct: 743 KSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSRNKEEE 802
Query: 2049 --NPKSESTTTNNPASESITSSSPASESTTTSS--PASESTTTSSPASESTTTSSPASES 2104
S ++++P E + P + T+SS P S S+T SS S ST+
Sbjct: 803 MLPSPSSPLSSSSPKPEHPSRKRPRRQEDTSSSSGPFSASSTKSSSKSSSTSKHRKTEGK 862
Query: 2105 TTTSSPESESTTTSSPASES 2124
+++S E + ++ +P S
Sbjct: 863 GSSTSKEHKGSSGDTPNKAS 882
|
This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154 |
| >gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (95), Expect = 0.004
Identities = 21/104 (20%), Positives = 37/104 (35%)
Query: 1846 TNNLLISMLAATAVAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESEST 1905
TN ++ T + N S I TT +++ + T+ + S ST
Sbjct: 76 TNTTTVTSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSST 135
Query: 1906 TTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSS 1949
T+ + TT +P S TS+ + + E + S
Sbjct: 136 TSATTRITNATTLAPTLSSKGTSNATKTTAELPTVPDERQPSLS 179
|
Length = 234 |
| >gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.004
Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 21/258 (8%)
Query: 1901 ESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSL 1960
+ E +++PES T S S +S+ + + E +++T S ES+S S
Sbjct: 211 DDEGMQSDDPES----TRSERGNSRMSSAGLKSKESKGEDEEQASTQDSGESQSVEYPSR 266
Query: 1961 VSESTTTSSPE---SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTT 2017
+ S E E +++ E +S +T E+ S S S E +
Sbjct: 267 KFFRKSRISEEDGRGELDDSNTMEVKSDST-----ENAGLSQSREHSR---SESQEDSEE 318
Query: 2018 SSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTT 2077
+ +S P SES S A + N+ +S+ + ++ +++ SE
Sbjct: 319 NQSQEDSQEVQDPSSES---SQEADLPSQENSSESQEEVVSESRGDNPDNTTSHSEDQED 375
Query: 2078 SSPASESTTTSSPASESTTTSSPA---SESTTTSSPESESTTTSSPASESTTIEEQGVSP 2134
S + E + + +SES +T A S + +SS ES +T +S ++ S
Sbjct: 376 SESSEEDSLDTPSSSESQSTEEQADSESNESLSSSEESPESTEDENSSSQEGLQSHSAST 435
Query: 2135 HSEKLSANEDPEEFPNED 2152
S + + + ED
Sbjct: 436 ESRSQESQSEQDSRSEED 453
|
This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown. Length = 514 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.004
Identities = 26/254 (10%), Positives = 63/254 (24%), Gaps = 13/254 (5%)
Query: 1910 PESESTTTSSPESESTTTSSLVSES---TTTSSPESESTTTSSPESESTTTSSLVSESTT 1966
PE S ++ S +P + ++P + +
Sbjct: 2708 PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPP 2767
Query: 1967 TSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTI---SPVSESTTTSSPVSE 2023
+P + +SL + SP + +P + +SP
Sbjct: 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP 2827
Query: 2024 STTTISPESESTTTSSPASESTTT-------NNPKSESTTTNNPASESITSSSPASESTT 2076
S + + + + +PA++ + P
Sbjct: 2828 LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLA 2887
Query: 2077 TSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHS 2136
+ + + + + P + P + P+ P + ++P +
Sbjct: 2888 RPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTT 2947
Query: 2137 EKLSANEDPEEFPN 2150
+ A E P
Sbjct: 2948 DPAGAGEPSGAVPQ 2961
|
Length = 3151 |
| >gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.7 bits (97), Expect = 0.004
Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 26/175 (14%)
Query: 1851 ISMLAATAVAISVIDNYSEIIFTTNNNSES-----TVVMSTLN---------SLLSENTT 1896
+ +A T++A+ ++ + + T + +E + TL + + + T
Sbjct: 3 MRTIAKTSLALGLLTTGAITVTTQSVKAEKIQSTKVDKVPTLKAERLAMINITAGANSAT 62
Query: 1897 TNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTT 1956
T + + T E +P + TS+ S+ S P+ E + + +
Sbjct: 63 TQAANTRQERTPKLE------KAPNTNEEKTSA--SKIEKISQPKQEEQKSLNISATPAP 114
Query: 1957 TSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPES-ESTTTISP 2010
+T +++P+++ TT P S +T ++S T SP ++ T ++P
Sbjct: 115 KQEQSQTTTESTTPKTKVTT---PPSTNTPQPMQSTKSDTPQSPTIKQAQTDMTP 166
|
Length = 356 |
| >gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein | Back alignment and domain information |
|---|
Score = 39.8 bits (92), Expect = 0.004
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 2052 SESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPE 2111
+ E+ S + +TTT++P + +TTT++ + TTT +TTT++
Sbjct: 26 QGEGQYDAAVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTT--TTKTTTTTTTTT 83
Query: 2112 SESTTTSSPASESTTIE 2128
+ +TTT +P+ +TT E
Sbjct: 84 TTTTTTEAPSKNTTTSE 100
|
This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143 |
| >gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.004
Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 16/182 (8%)
Query: 1909 NPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTS 1968
E + +++++ + + S S+ SS + E + + S +TT
Sbjct: 197 GCEIQPSSSNNEAPKEGNNQT--SLSSIRSSKKQERSPKKKAPQRDVSISD---RATTPI 251
Query: 1969 SPESESTT---TSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSEST 2025
+P ES + +S+P ST T + + S T + VS S SE
Sbjct: 252 APGVESASQSISSTPTPVSTDTPLHTVKDDSIKFDNSTLGTPTTHVSMKKKESENDSEQQ 311
Query: 2026 TTISPESESTTTSSPASESTTTNNPKSESTT------TNNP--ASESITSSSPASESTTT 2077
+S + + T ++ + ++ + SP+ ST
Sbjct: 312 LNFPKDSTDEIRKTIQHDVETNAAFQNPLFNDELKWWLASKRYLTQPLQEMSPSMVSTLE 371
Query: 2078 SS 2079
+S
Sbjct: 372 NS 373
|
Length = 548 |
| >gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.004
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 2014 STTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASE 2073
S+TT S + S++T+SP + T +S ES + + +E T P SES + +S +S
Sbjct: 4 SSTTLSSIILSSSTLSPTTFFTIETS-MDESKSIISTFTEIIPTEIPTSESPSPNSNSSS 62
Query: 2074 STTTSSPA 2081
S+++SS +
Sbjct: 63 SSSSSSSS 70
|
Length = 417 |
| >gnl|CDD|144411 pfam00802, Glycoprotein_G, Pneumovirus attachment glycoprotein G | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.004
Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 11/232 (4%)
Query: 1854 LAATAVAISVIDNYSEIIFTTNNNSESTVVMSTLNSLLS--ENTTTNSPESESTTTNNPE 1911
L+ A+ IS + IIF ++ N + T + + + +N T+ + + +P
Sbjct: 34 LSILAMIISTSLIIAAIIFISSANHKVTPTTTPTQQITNQIQNHTSTYLTQHNQLSTSPS 93
Query: 1912 SESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPE 1971
++STTT + T+ + ++ ++ TT+ ++ T +S P+
Sbjct: 94 NQSTTTPLIHTILDDTTPGTKSTYQHTTVGTKGRTTTPAQTNKPPTKP--RQSNPPEKPQ 151
Query: 1972 SESTTTSSP-----ESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTT 2026
+ E+ + + P TT + + TT TT
Sbjct: 152 DDFHFEVFNFVPCSICENNPACLSICKRIPEKKPGKAPTTKPTKKPKPKTTKKDTKTQTT 211
Query: 2027 TISPESESTTTSSPASESTTTN--NPKSESTTTNNPASESITSSSPASESTT 2076
+ TS P +T TN P+ +T + +TS ST
Sbjct: 212 KSKEATTHHPTSEPTKLTTKTNTTTPQFTPLSTTTTRNPELTSQMETFHSTN 263
|
This family includes attachment proteins from respiratory synctial virus. Glycoprotein G has not been shown to have any neuraminidase or hemagglutinin activity. The amino terminus is thought to be cytoplasmic, and the carboxyl terminus extracellular. The extracellular region contains four completely conserved cysteine residues. Length = 263 |
| >gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.004
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 1992 SESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPK 2051
S++ + +SP+ ++ + +E+ S+P S+T+ + E+ + ++ A+ T +P
Sbjct: 88 SDAGSQASPDDDAQP--AAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPT 145
Query: 2052 SESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASES--TTTSSPASESTTTSS 2109
++ T + S + E T S+P + T A ES T + A + T
Sbjct: 146 AQPATPDERRSPR-QRPPVSGEPPTPSTPDAHVAGTLQAARESLVETLARFARRAAATDD 204
Query: 2110 P 2110
P
Sbjct: 205 P 205
|
Length = 226 |
| >gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.004
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 1962 SESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPV 2021
S ++T+SS E+ +T+ +S T + S T+ ++++T + +ESTT +S
Sbjct: 26 SGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNAN-GTESTTQASQP 84
Query: 2022 SESTTTISPESESTTTSSPASESTTTN 2048
TTI+ + S P +S N
Sbjct: 85 HSHETTIT--CTKSLISVPYYKSVDMN 109
|
Length = 486 |
| >gnl|CDD|113196 pfam04415, DUF515, Protein of unknown function (DUF515) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.004
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 1910 PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE-SESTTTSSLVSESTTTS 1968
+S SES + S+ S S++TSS ES ST+ S + S + S + ST+ S
Sbjct: 268 DSGYVILSSISVSESQSQSTSTSSSSSTSSSESSSTSYSPGDASIQNSQRSQLQSSTSQS 327
Query: 1969 SPESESTTTS 1978
ES S++ S
Sbjct: 328 ESESASSSYS 337
|
Family of hypothetical Archaeal proteins. Length = 416 |
| >gnl|CDD|113196 pfam04415, DUF515, Protein of unknown function (DUF515) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.004
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 1932 SESTTTSS--PESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSS 1989
T +S SES + S+ S S++TSS ES ST+ S ++ +
Sbjct: 258 QNGTIFYEIVDSGYVILSSISVSESQSQSTSTSSSSSTSSSESSSTSYSPGDASIQNSQR 317
Query: 1990 LVSESTTTSSPESESTTTIS 2009
+S+T+ S ++++ S
Sbjct: 318 SQLQSSTSQSESESASSSYS 337
|
Family of hypothetical Archaeal proteins. Length = 416 |
| >gnl|CDD|221548 pfam12361, DBP, Duffy-antigen binding protein | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.004
Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 32/276 (11%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE 1951
S + NS +STT E+ T T S V S S +++ P
Sbjct: 20 SAHGNVNSGAGKSTT-----GEAVTGDGQNGNQTPAESNVQRSDIVESLSAKNVDPQKPV 74
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSP------ESEST 2005
SE + +S V++ + + T++S SEST ++ + T S+ E+
Sbjct: 75 SERSADTSSVTD--IAEAGKENLGTSNSRPSESTVEANSPGDGTVNSASIPVVSSENPLV 132
Query: 2006 TT---ISPVSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPAS 2062
T + P +++ S S + + ES + S+ E T E T + ++
Sbjct: 133 TKHKGLEPSKDNSDNSGSASHALAGENGESMAGPDSNSKGE-TADPQDNIEVKATKDSSN 191
Query: 2063 ESITSSSPASESTTT---------------SSPASESTTTSSPASESTTTSSPASESTTT 2107
S +SS +STT+ S + + S A + T + S +
Sbjct: 192 RSDGTSSATGDSTTSVDRAINKGVPEDGDKSVGSKRAENEDSSAEKDGATVAGGSTNDPE 251
Query: 2108 SSPESESTTTSSPASESTTIEEQGVSPHSEKLSANE 2143
+ ++ + P S + E +E L +NE
Sbjct: 252 QNVSVDTDNGNVPGSGNKQNEGATALSGAESLESNE 287
|
This family of proteins is found in eukaryotes. Proteins in this family are typically between 449 and 1061 amino acids in length. The family is found in association with pfam05424. There are two conserved sequence motifs: NKNGG and QKHDF. This family is part of the Duffy-antigen binding protein of Plasmodium spp. This protein is an antigen on these parasites which enable them to invade erythrocytes. Length = 318 |
| >gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.004
Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 4/146 (2%)
Query: 2031 ESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSP 2090
E E ++ A S + N P + + +E T + S
Sbjct: 297 EREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRD 356
Query: 2091 ASESTTTSSPASESTTTSSPESESTTTSSPASESTTIEEQGVSPHSEKLSANEDPEEFPN 2150
EST SE+ + +PA+ E +P A+E +E
Sbjct: 357 G-ESTPAVEETSEADIER-EQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDE--T 412
Query: 2151 EDVFEHTFAEIPNIDHSNQTDEAIPE 2176
E A IP+ ++ A P
Sbjct: 413 EPEVPEKAAPIPDPAKPDELAVAGPG 438
|
Length = 460 |
| >gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.004
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 4/151 (2%)
Query: 1981 ESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSP 2040
E E ++ S ++ P + + V+E T ++ ES
Sbjct: 297 EREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRD 356
Query: 2041 ASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSPASESTTTSSP 2100
EST SE+ + +PA+ + ++ ++ ASE+ + P
Sbjct: 357 G-ESTPAVEETSEADIER-EQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEP 414
Query: 2101 ASESTTTSSPESESTTTSSPASESTTIEEQG 2131
E ++P + A +
Sbjct: 415 --EVPEKAAPIPDPAKPDELAVAGPGDDPAE 443
|
Length = 460 |
| >gnl|CDD|221866 pfam12935, Sec16_N, Vesicle coat trafficking protein Sec16 N-terminus | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.004
Identities = 46/230 (20%), Positives = 65/230 (28%), Gaps = 31/230 (13%)
Query: 1921 ESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSP 1980
ST T + S E + + E S S + S
Sbjct: 20 NQLSTQTKPIYLPPENESRFEEGAPLLDNGEQNEPVEESAPQTVAIDSVFVEDEDDEGSD 79
Query: 1981 ESESTTTSSLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSSP 2040
S V E +ST S V +S + S S E T +
Sbjct: 80 FFNSLHEGEAVEEQQPPPHLTRKST---SQVLDSLGLNPDSLSS--PASAEPLDPTAQNE 134
Query: 2041 ASES---TTTNNPKSESTTTNNPASE-----SITSSSPASESTTTSSPASE--------- 2083
S +T NP ES + + P+SE S SEST T +E
Sbjct: 135 FSNVLAASTDGNP--ESESQSEPSSEEELAARAELSDDESESTPTEDDLAERWQAFLDND 192
Query: 2084 -----STTTSSPASESTTTSSPASESTTTSSP--ESESTTTSSPASESTT 2126
T+ + T + + SP E + P +E TT
Sbjct: 193 DDLLLDDETALAEGPNGDTPENSQNTLNDDSPFGTPEFPSPVRPKAEPTT 242
|
Sec16 is a multi-domain vesicle coat protein. The overall function of Sec16 is in mediating the movement of protein-cargo between the organelles of the secretory pathway. Over-expression of truncated mutants of only the N-terminus are lethal, and this portion does not appear to be essential for function so may act as a stabilising region. Length = 246 |
| >gnl|CDD|221242 pfam11816, DUF3337, Domain of unknown function (DUF3337) | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.004
Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 11/171 (6%)
Query: 1876 NNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSEST 1935
NN S + + S+ + + E+ + E E S S + T
Sbjct: 5 NNKRSILSKDSSGSV-TLWDIPSGKVVETPGEVSEEEEIKELESVYSPNWFTVDSKEGKL 63
Query: 1936 TTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPESES-------TTTS 1988
++S + +SS + S+ E S ++ +S E + +
Sbjct: 64 SSSLFGKKFRMSSSLLKKCGAAST---EGKPQKSEKAIDLKSSKAEKDPEINLGGLLLRA 120
Query: 1989 SLVSESTTTSSPESESTTTISPVSESTTTSSPVSESTTTISPESESTTTSS 2039
L +P +T P ++ T + TT I E
Sbjct: 121 LLEYWKELKCNPRVLVFSTFLPSLDNETPYLKLPPDTTIIISEESPDLGGG 171
|
This family of proteins are functionally uncharacterized. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length. Length = 320 |
| >gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.004
Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 12/174 (6%)
Query: 1958 SSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTISPVSESTTT 2017
S+L + ST++S S S + +T ++ TS+ + ++ P+S + T
Sbjct: 29 SALKAPSTSSSEA-PASAEKSIDLNGATQANAQQPAPGPTSAENTSQDLSLPPISSTPTQ 87
Query: 2018 --SSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESIT--SSSPASE 2073
+ + + + + + NN ST PA+ + +S P +E
Sbjct: 88 GQEPLAQDGQQRVEVQGDLNNAAVQPQNLSQLNNVAVTSTLPTEPATVAPVRNASVPTAE 147
Query: 2074 STTTSSPASESTTTS---SPASESTTTSSPASESTTTSSPESESTTTSSPASES 2124
+ P + P + T T++ A T+SP T PA +
Sbjct: 148 RPAITRPVRAQAVSEPAVEPKAAKTATATEAK--VQTASPAQTPAT--PPAGKG 197
|
Length = 292 |
| >gnl|CDD|222274 pfam13634, Nucleoporin_FG, Nucleoporin FG repeat region | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 13/100 (13%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 1907 TNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTT--TSSPESESTTTSSLVSES 1964
+++ + +++ S T L ++ ++P S +SS ++ + L +
Sbjct: 1 SSSTTAGASSGGLFGSAPATGGGLFGQNAANTTPTSGGGLFGSSSSQATQPSGGGLFGSA 60
Query: 1965 TTTSSPESESTT--TSSPESESTTTSSLVSESTTTSSPES 2002
TS+ + +++ + + T L +T +
Sbjct: 61 AQTSATTTGGGLFGSTTATTTTATGGGLFGNATAAQPATT 100
|
This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145. Length = 106 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2435 | |||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG1542|consensus | 372 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG1408|consensus | 1080 | 100.0 | ||
| PTZ00203 | 348 | cathepsin L protease; Provisional | 100.0 | |
| KOG1543|consensus | 325 | 100.0 | ||
| KOG1408|consensus | 1080 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG1539|consensus | 910 | 100.0 | ||
| PTZ00200 | 448 | cysteine proteinase; Provisional | 100.0 | |
| PTZ00021 | 489 | falcipain-2; Provisional | 100.0 | |
| PTZ00049 | 693 | cathepsin C-like protein; Provisional | 100.0 | |
| KOG0272|consensus | 459 | 100.0 | ||
| KOG1063|consensus | 764 | 100.0 | ||
| cd02621 | 243 | Peptidase_C1A_CathepsinC Cathepsin C; also known a | 100.0 | |
| KOG0286|consensus | 343 | 100.0 | ||
| cd02698 | 239 | Peptidase_C1A_CathepsinX Cathepsin X; the only pap | 100.0 | |
| PTZ00364 | 548 | dipeptidyl-peptidase I precursor; Provisional | 100.0 | |
| cd02620 | 236 | Peptidase_C1A_CathepsinB Cathepsin B group; compos | 100.0 | |
| smart00645 | 174 | Pept_C1 Papain family cysteine protease. | 100.0 | |
| KOG1539|consensus | 910 | 100.0 | ||
| KOG1063|consensus | 764 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG2106|consensus | 626 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0647|consensus | 347 | 100.0 | ||
| cd02248 | 210 | Peptidase_C1A Peptidase C1A subfamily (MEROPS data | 100.0 | |
| KOG2106|consensus | 626 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0284|consensus | 464 | 99.98 | ||
| KOG0282|consensus | 503 | 99.98 | ||
| KOG1036|consensus | 323 | 99.98 | ||
| KOG0265|consensus | 338 | 99.98 | ||
| KOG0296|consensus | 399 | 99.98 | ||
| KOG0295|consensus | 406 | 99.97 | ||
| KOG0284|consensus | 464 | 99.97 | ||
| KOG0292|consensus | 1202 | 99.97 | ||
| KOG0282|consensus | 503 | 99.97 | ||
| KOG0293|consensus | 519 | 99.97 | ||
| PF00112 | 219 | Peptidase_C1: Papain family cysteine protease This | 99.97 | |
| KOG0645|consensus | 312 | 99.97 | ||
| KOG0263|consensus | 707 | 99.97 | ||
| KOG0278|consensus | 334 | 99.97 | ||
| KOG0263|consensus | 707 | 99.97 | ||
| KOG0266|consensus | 456 | 99.97 | ||
| KOG0285|consensus | 460 | 99.97 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0645|consensus | 312 | 99.97 | ||
| KOG2048|consensus | 691 | 99.97 | ||
| KOG0281|consensus | 499 | 99.96 | ||
| KOG0772|consensus | 641 | 99.96 | ||
| KOG0316|consensus | 307 | 99.96 | ||
| KOG0293|consensus | 519 | 99.96 | ||
| KOG0281|consensus | 499 | 99.96 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| PTZ00462 | 1004 | Serine-repeat antigen protein; Provisional | 99.96 | |
| KOG2394|consensus | 636 | 99.96 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0313|consensus | 423 | 99.96 | ||
| KOG0277|consensus | 311 | 99.96 | ||
| KOG0316|consensus | 307 | 99.96 | ||
| KOG2048|consensus | 691 | 99.96 | ||
| KOG1544|consensus | 470 | 99.96 | ||
| KOG0266|consensus | 456 | 99.95 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG0643|consensus | 327 | 99.95 | ||
| KOG0288|consensus | 459 | 99.95 | ||
| KOG1407|consensus | 313 | 99.95 | ||
| KOG0278|consensus | 334 | 99.94 | ||
| KOG0643|consensus | 327 | 99.94 | ||
| KOG0275|consensus | 508 | 99.94 | ||
| KOG0313|consensus | 423 | 99.94 | ||
| KOG1446|consensus | 311 | 99.94 | ||
| KOG1407|consensus | 313 | 99.94 | ||
| KOG0275|consensus | 508 | 99.94 | ||
| cd02619 | 223 | Peptidase_C1 C1 Peptidase family (MEROPS database | 99.94 | |
| KOG0283|consensus | 712 | 99.94 | ||
| KOG1446|consensus | 311 | 99.94 | ||
| KOG0274|consensus | 537 | 99.93 | ||
| KOG0277|consensus | 311 | 99.93 | ||
| KOG1445|consensus | 1012 | 99.93 | ||
| KOG0274|consensus | 537 | 99.93 | ||
| KOG0268|consensus | 433 | 99.93 | ||
| KOG1445|consensus | 1012 | 99.92 | ||
| KOG0640|consensus | 430 | 99.92 | ||
| KOG0640|consensus | 430 | 99.92 | ||
| KOG0300|consensus | 481 | 99.92 | ||
| KOG0973|consensus | 942 | 99.92 | ||
| KOG0308|consensus | 735 | 99.92 | ||
| KOG0973|consensus | 942 | 99.92 | ||
| KOG0268|consensus | 433 | 99.92 | ||
| KOG0641|consensus | 350 | 99.92 | ||
| KOG0647|consensus | 347 | 99.92 | ||
| KOG4283|consensus | 397 | 99.92 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0308|consensus | 735 | 99.92 | ||
| KOG0301|consensus | 745 | 99.92 | ||
| KOG0305|consensus | 484 | 99.91 | ||
| KOG0288|consensus | 459 | 99.91 | ||
| KOG0283|consensus | 712 | 99.91 | ||
| KOG0305|consensus | 484 | 99.91 | ||
| KOG0310|consensus | 487 | 99.91 | ||
| KOG0300|consensus | 481 | 99.91 | ||
| KOG0289|consensus | 506 | 99.91 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0310|consensus | 487 | 99.91 | ||
| KOG0289|consensus | 506 | 99.91 | ||
| KOG0294|consensus | 362 | 99.9 | ||
| KOG0772|consensus | 641 | 99.9 | ||
| KOG0299|consensus | 479 | 99.9 | ||
| KOG2096|consensus | 420 | 99.9 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.9 | |
| KOG0301|consensus | 745 | 99.89 | ||
| KOG1272|consensus | 545 | 99.89 | ||
| KOG0264|consensus | 422 | 99.89 | ||
| KOG1274|consensus | 933 | 99.89 | ||
| KOG0641|consensus | 350 | 99.89 | ||
| KOG0294|consensus | 362 | 99.89 | ||
| KOG0299|consensus | 479 | 99.89 | ||
| KOG0264|consensus | 422 | 99.89 | ||
| KOG1332|consensus | 299 | 99.88 | ||
| KOG1332|consensus | 299 | 99.88 | ||
| KOG1036|consensus | 323 | 99.88 | ||
| KOG1273|consensus | 405 | 99.88 | ||
| KOG4283|consensus | 397 | 99.87 | ||
| KOG0269|consensus | 839 | 99.86 | ||
| KOG0269|consensus | 839 | 99.86 | ||
| KOG0321|consensus | 720 | 99.86 | ||
| KOG2055|consensus | 514 | 99.86 | ||
| KOG0639|consensus | 705 | 99.85 | ||
| KOG2055|consensus | 514 | 99.85 | ||
| KOG0321|consensus | 720 | 99.85 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.85 | |
| KOG1963|consensus | 792 | 99.85 | ||
| KOG2445|consensus | 361 | 99.85 | ||
| KOG4378|consensus | 673 | 99.85 | ||
| KOG1274|consensus | 933 | 99.85 | ||
| KOG0650|consensus | 733 | 99.85 | ||
| KOG4497|consensus | 447 | 99.84 | ||
| KOG1273|consensus | 405 | 99.84 | ||
| KOG0639|consensus | 705 | 99.84 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG2096|consensus | 420 | 99.84 | ||
| KOG4328|consensus | 498 | 99.84 | ||
| KOG0646|consensus | 476 | 99.83 | ||
| KOG1963|consensus | 792 | 99.83 | ||
| KOG1538|consensus | 1081 | 99.83 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG0646|consensus | 476 | 99.83 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG2919|consensus | 406 | 99.82 | ||
| KOG0267|consensus | 825 | 99.82 | ||
| KOG2445|consensus | 361 | 99.82 | ||
| KOG0267|consensus | 825 | 99.8 | ||
| KOG0650|consensus | 733 | 99.79 | ||
| KOG0302|consensus | 440 | 99.79 | ||
| KOG0302|consensus | 440 | 99.79 | ||
| KOG4328|consensus | 498 | 99.79 | ||
| KOG0270|consensus | 463 | 99.78 | ||
| KOG1034|consensus | 385 | 99.78 | ||
| KOG1009|consensus | 434 | 99.77 | ||
| KOG0270|consensus | 463 | 99.77 | ||
| KOG1538|consensus | 1081 | 99.77 | ||
| KOG1310|consensus | 758 | 99.77 | ||
| KOG0307|consensus | 1049 | 99.76 | ||
| KOG4378|consensus | 673 | 99.76 | ||
| KOG0322|consensus | 323 | 99.76 | ||
| KOG0307|consensus | 1049 | 99.76 | ||
| KOG2919|consensus | 406 | 99.75 | ||
| KOG0644|consensus | 1113 | 99.75 | ||
| COG4870 | 372 | Cysteine protease [Posttranslational modification, | 99.75 | |
| KOG1334|consensus | 559 | 99.74 | ||
| KOG4227|consensus | 609 | 99.74 | ||
| KOG1034|consensus | 385 | 99.74 | ||
| KOG1009|consensus | 434 | 99.73 | ||
| KOG0649|consensus | 325 | 99.71 | ||
| KOG1524|consensus | 737 | 99.71 | ||
| KOG1007|consensus | 370 | 99.7 | ||
| KOG1188|consensus | 376 | 99.69 | ||
| KOG4227|consensus | 609 | 99.68 | ||
| KOG0642|consensus | 577 | 99.67 | ||
| KOG0322|consensus | 323 | 99.66 | ||
| KOG1188|consensus | 376 | 99.65 | ||
| KOG1334|consensus | 559 | 99.64 | ||
| KOG0303|consensus | 472 | 99.64 | ||
| KOG1007|consensus | 370 | 99.64 | ||
| KOG0303|consensus | 472 | 99.63 | ||
| KOG4497|consensus | 447 | 99.63 | ||
| KOG0642|consensus | 577 | 99.63 | ||
| KOG0644|consensus | 1113 | 99.62 | ||
| KOG1524|consensus | 737 | 99.62 | ||
| KOG1587|consensus | 555 | 99.62 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.62 | |
| KOG1912|consensus | 1062 | 99.62 | ||
| KOG1517|consensus | 1387 | 99.62 | ||
| KOG0649|consensus | 325 | 99.61 | ||
| KOG1310|consensus | 758 | 99.59 | ||
| KOG1587|consensus | 555 | 99.59 | ||
| KOG2110|consensus | 391 | 99.58 | ||
| KOG1517|consensus | 1387 | 99.57 | ||
| KOG0290|consensus | 364 | 99.56 | ||
| KOG0974|consensus | 967 | 99.56 | ||
| KOG0290|consensus | 364 | 99.55 | ||
| KOG1912|consensus | 1062 | 99.55 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.55 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.55 | |
| KOG0974|consensus | 967 | 99.53 | ||
| KOG1240|consensus | 1431 | 99.52 | ||
| KOG2110|consensus | 391 | 99.52 | ||
| KOG1523|consensus | 361 | 99.51 | ||
| KOG0771|consensus | 398 | 99.51 | ||
| KOG1523|consensus | 361 | 99.5 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG1240|consensus | 1431 | 99.49 | ||
| KOG0771|consensus | 398 | 99.49 | ||
| KOG2394|consensus | 636 | 99.45 | ||
| KOG1272|consensus | 545 | 99.42 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.42 | |
| KOG2315|consensus | 566 | 99.41 | ||
| KOG3881|consensus | 412 | 99.4 | ||
| KOG2315|consensus | 566 | 99.38 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG2321|consensus | 703 | 99.37 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG2111|consensus | 346 | 99.36 | ||
| KOG2139|consensus | 445 | 99.34 | ||
| KOG1354|consensus | 433 | 99.34 | ||
| KOG2321|consensus | 703 | 99.34 | ||
| KOG2111|consensus | 346 | 99.33 | ||
| KOG3881|consensus | 412 | 99.31 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG2139|consensus | 445 | 99.3 | ||
| KOG1354|consensus | 433 | 99.29 | ||
| KOG2041|consensus | 1189 | 99.29 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.27 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.27 | |
| cd00585 | 437 | Peptidase_C1B Peptidase C1B subfamily (MEROPS data | 99.26 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.25 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.25 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.24 | |
| KOG1409|consensus | 404 | 99.24 | ||
| KOG1409|consensus | 404 | 99.23 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.2 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.2 | |
| KOG2041|consensus | 1189 | 99.19 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.17 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.16 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG2314|consensus | 698 | 99.15 | ||
| KOG2314|consensus | 698 | 99.14 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.14 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.12 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.12 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.11 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.08 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.08 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.07 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.07 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.05 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.05 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.02 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.0 | |
| KOG0280|consensus | 339 | 98.99 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.98 | |
| KOG0309|consensus | 1081 | 98.94 | ||
| KOG0309|consensus | 1081 | 98.94 | ||
| KOG4547|consensus | 541 | 98.92 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.91 | |
| KOG1064|consensus | 2439 | 98.91 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.88 | |
| KOG4547|consensus | 541 | 98.87 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.87 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.83 | |
| KOG4532|consensus | 344 | 98.83 | ||
| KOG0280|consensus | 339 | 98.82 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.81 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.81 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.79 | |
| KOG1064|consensus | 2439 | 98.76 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.71 | |
| KOG4190|consensus | 1034 | 98.7 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.67 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.67 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.66 | |
| KOG3914|consensus | 390 | 98.64 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.6 | |
| KOG4190|consensus | 1034 | 98.57 | ||
| KOG2695|consensus | 425 | 98.53 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.51 | |
| KOG0882|consensus | 558 | 98.49 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.45 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.39 | |
| PF03051 | 438 | Peptidase_C1_2: Peptidase C1-like family This fami | 98.38 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.36 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.33 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.31 | |
| KOG3914|consensus | 390 | 98.31 | ||
| KOG3617|consensus | 1416 | 98.3 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.29 | |
| KOG4532|consensus | 344 | 98.27 | ||
| KOG1832|consensus | 1516 | 98.25 | ||
| KOG4714|consensus | 319 | 98.24 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.23 | |
| PF04003 | 110 | Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A la | 98.22 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.21 | |
| KOG1832|consensus | 1516 | 98.2 | ||
| KOG2695|consensus | 425 | 98.2 | ||
| KOG4649|consensus | 354 | 98.12 | ||
| KOG4649|consensus | 354 | 98.11 | ||
| KOG4714|consensus | 319 | 98.11 | ||
| KOG1897|consensus | 1096 | 98.1 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.09 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.09 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.08 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.05 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.05 | |
| KOG0260|consensus | 1605 | 98.04 | ||
| KOG1275|consensus | 1118 | 98.04 | ||
| KOG0882|consensus | 558 | 97.96 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.96 | |
| KOG1920|consensus | 1265 | 97.96 | ||
| KOG2114|consensus | 933 | 97.96 | ||
| KOG1645|consensus | 463 | 97.92 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.9 | |
| KOG1920|consensus | 1265 | 97.88 | ||
| KOG0260|consensus | 1605 | 97.88 | ||
| KOG1275|consensus | 1118 | 97.87 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.79 | |
| KOG2066|consensus | 846 | 97.73 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.72 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.71 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.7 | |
| KOG1645|consensus | 463 | 97.69 | ||
| KOG1897|consensus | 1096 | 97.65 | ||
| KOG3617|consensus | 1416 | 97.65 | ||
| KOG2114|consensus | 933 | 97.58 | ||
| PF04192 | 237 | Utp21: Utp21 specific WD40 associated putative dom | 97.58 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.57 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.57 | |
| KOG2066|consensus | 846 | 97.56 | ||
| KOG3621|consensus | 726 | 97.49 | ||
| KOG3621|consensus | 726 | 97.45 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.38 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.32 | |
| KOG1008|consensus | 783 | 97.31 | ||
| PF08149 | 80 | BING4CT: BING4CT (NUC141) domain; InterPro: IPR012 | 97.25 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.23 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.18 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.18 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.14 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.12 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.12 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.11 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.09 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.06 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.03 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.03 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.02 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.0 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.99 | |
| KOG1008|consensus | 783 | 96.93 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.88 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.85 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.71 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.69 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.68 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.5 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.46 | |
| KOG4701|consensus | 568 | 96.41 | ||
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.38 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.33 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.3 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.28 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.21 | |
| KOG2395|consensus | 644 | 96.08 | ||
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.05 | |
| KOG4499|consensus | 310 | 96.03 | ||
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.01 | |
| KOG4640|consensus | 665 | 95.97 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.95 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.93 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.91 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.9 | |
| KOG2395|consensus | 644 | 95.83 | ||
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.72 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.62 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.54 | |
| KOG1898|consensus | 1205 | 95.37 | ||
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.29 | |
| KOG4640|consensus | 665 | 95.25 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.9 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.73 | |
| KOG2444|consensus | 238 | 94.72 | ||
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.67 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.58 | |
| KOG1916|consensus | 1283 | 94.5 | ||
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.49 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.44 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.4 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.39 | |
| COG3579 | 444 | PepC Aminopeptidase C [Amino acid transport and me | 94.35 | |
| KOG2079|consensus | 1206 | 94.07 | ||
| KOG2079|consensus | 1206 | 94.04 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.01 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.99 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.77 | |
| PRK10115 | 686 | protease 2; Provisional | 93.64 | |
| KOG2444|consensus | 238 | 93.59 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.48 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 93.05 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.81 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.71 | |
| KOG1898|consensus | 1205 | 92.52 | ||
| KOG4499|consensus | 310 | 92.46 | ||
| KOG3630|consensus | 1405 | 92.0 | ||
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 91.91 | |
| KOG4441|consensus | 571 | 91.69 | ||
| KOG4441|consensus | 571 | 91.61 | ||
| PRK10115 | 686 | protease 2; Provisional | 91.27 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.79 | |
| KOG1916|consensus | 1283 | 90.67 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 90.35 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 90.26 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 90.09 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.07 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 90.05 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.82 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 89.59 | |
| KOG3630|consensus | 1405 | 89.59 | ||
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 88.78 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 88.76 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 88.68 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 88.47 | |
| PF05109 | 830 | Herpes_BLLF1: Herpes virus major outer envelope gl | 87.25 | |
| KOG2247|consensus | 615 | 86.85 | ||
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 86.58 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 85.84 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 85.04 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 84.69 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 84.46 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 84.32 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 83.96 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 83.75 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 83.47 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 83.33 | |
| PF05109 | 830 | Herpes_BLLF1: Herpes virus major outer envelope gl | 83.31 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 83.18 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 82.93 | |
| COG3889 | 872 | Predicted solute binding protein [General function | 82.26 | |
| PLN02153 | 341 | epithiospecifier protein | 82.09 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 82.07 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 81.48 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 80.76 |
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-79 Score=735.69 Aligned_cols=582 Identities=40% Similarity=0.689 Sum_probs=495.7
Q ss_pred EEeCCCeEEEEeCCCCcceEee---cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcC
Q psy4869 465 SGSDDCTVKVWDPRKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP 541 (2435)
Q Consensus 465 sgs~Dg~I~vwD~~~~~~~~~~---~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~sp 541 (2435)
+++....|.+||+++++....+ ..+..++|++-+++.-+||+|..||.|+||+..+.....++.+|+..|+++.|+.
T Consensus 38 a~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~ 117 (888)
T KOG0306|consen 38 AVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDK 117 (888)
T ss_pred EEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcc
Confidence 3444567999999999544333 4556899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC
Q psy4869 542 DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG 621 (2435)
Q Consensus 542 dg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~ 621 (2435)
.|.+|++||.|+.|.+||+- ...-...+.||.. .|+..-|..+.++|++.+.|+.|++||+++..+..+...
T Consensus 118 ~G~rlaSGskDt~IIvwDlV----~E~Gl~rL~GHkd----~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd 189 (888)
T KOG0306|consen 118 IGTRLASGSKDTDIIVWDLV----GEEGLFRLRGHKD----SITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVD 189 (888)
T ss_pred cCceEeecCCCccEEEEEec----cceeeEEeecchH----HHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEec
Confidence 99999999999999999997 4566778888863 667777887789999999999999999999999999999
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeeccCCC
Q psy4869 622 HNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDE 701 (2435)
Q Consensus 622 h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~ 701 (2435)
|.+.|+++++++ +.+++++.|+-+++|++....+....
T Consensus 190 ~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~---------------------------------------- 227 (888)
T KOG0306|consen 190 HRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKET---------------------------------------- 227 (888)
T ss_pred ccceEEEEEEec--ceEEEEecCCceEEEEeecccccccc----------------------------------------
Confidence 999999999998 78999999999999998521111000
Q ss_pred CchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeeecCCceEEEEEEeecCCchHHHHHHHHH
Q psy4869 702 SSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRK 781 (2435)
Q Consensus 702 ~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (2435)
.++..+..-+.+.+.+++|....+.+...+.++++..|++.++|+++.++|+.++..||+|+
T Consensus 228 ------------------~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~ 289 (888)
T KOG0306|consen 228 ------------------NRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKR 289 (888)
T ss_pred ------------------cccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHH
Confidence 11222333355667788888888888888899999999999999999999999999999999
Q ss_pred HHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccceeEEeEEEecCceEEEEEEecCCcccc
Q psy4869 782 LKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLEL 861 (2435)
Q Consensus 782 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~ 861 (2435)
.||+.. .+| ++ ...+..+.+.+.|+-+++.. .||++++++.|.++. +.-+.+..|..+.
T Consensus 290 ~Kkka~---------t~e----~~----~~v~~sl~~~i~r~~~ir~~---~kiks~dv~~~~~~~-~~lv~l~nNtv~~ 348 (888)
T KOG0306|consen 290 AKKKAE---------TEE----NE----DDVEKSLSDEIKRLETIRTS---AKIKSFDVTPSGGTE-NTLVLLANNTVEW 348 (888)
T ss_pred hhhhcc---------ccc----cc----cchhhhHHHHHHHHHheech---hheeEEEEEecCCcc-eeEEEeecCceEE
Confidence 988555 001 11 12345577888998888763 699999999997776 4445566666666
Q ss_pred cccccCCCc-ccccceeeeeecCCCCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEE
Q psy4869 862 HSLSLGGST-DSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940 (2435)
Q Consensus 862 ~~~~~~g~~-~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~L 940 (2435)
+.+.+.+.+ +....++....+||...|.+++||.|...+++|.++.++||+.+++++++++..+ ++.+..|.|.++++
T Consensus 349 ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 349 YSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYI 427 (888)
T ss_pred EEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceE
Confidence 656553333 4444556678899999999999999999999999999999999999999999987 88899999999999
Q ss_pred EEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEccccccccccccccc
Q psy4869 941 LVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETK 1020 (2435)
Q Consensus 941 avg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~ 1020 (2435)
++|+++|.+.|||+.+..++.++++|.+.||+++..||+ ..+++|+.|.+|++|++.....
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~----------~g~vT~saDktVkfWdf~l~~~--------- 488 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN----------KGFVTGSADKTVKFWDFKLVVS--------- 488 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC----------CceEEecCCcEEEEEeEEEEec---------
Confidence 999999999999999999999999999999999999997 5799999999999999864321
Q ss_pred ccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEE
Q psy4869 1021 DVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100 (2435)
Q Consensus 1021 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sg 1100 (2435)
......+++++.+.++++..+.|.|+++||||++||++.-|..|+||-+++.+....+.||.-||.|++++||++++++|
T Consensus 489 ~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTg 568 (888)
T KOG0306|consen 489 VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTG 568 (888)
T ss_pred cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEec
Confidence 11233456888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155 (2435)
Q Consensus 1101 s~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~ 1155 (2435)
+.|.+|++|-++-|.|.+.+.+|.+.|.+|.|.|+...+++++.|+.|+.||-..
T Consensus 569 SADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 569 SADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred cCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence 9999999999999999999999999999999999887777887777777777443
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=525.62 Aligned_cols=610 Identities=29% Similarity=0.455 Sum_probs=466.1
Q ss_pred cceeeEEEeecceeeeeeCCCCceEEEEEeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEe
Q psy4869 3 LTKQYLRYVHEGSFNIIASPNCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLS 82 (2435)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~ 82 (2435)
|+|+|+||+|-++||+|++-.+|++++...+.+||++++.+.-.|.+||++++|....+. ..+....++++.
T Consensus 1 mtK~Ylrye~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~--------~~~~k~evt~l~ 72 (888)
T KOG0306|consen 1 MTKSYLRYEPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLI--------LLKKKAEVTCLR 72 (888)
T ss_pred CchhhhcccccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhh--------hhcccceEEEee
Confidence 899999999999999999999999999999999999999878899999999985333221 122234678899
Q ss_pred ecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcE
Q psy4869 83 PNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVI 162 (2435)
Q Consensus 83 ~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V 162 (2435)
.++|.-.||+||+||.|+||++.+.+..-+|.||+..|+++.|+..|.+|||||.|+.|.+||+.....+.+++||+..|
T Consensus 73 ~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~i 152 (888)
T KOG0306|consen 73 SSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSI 152 (888)
T ss_pred ccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccc
Q psy4869 163 TDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTED 242 (2435)
Q Consensus 163 ~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~ 242 (2435)
+..-|. .+..+|+|.|.|+.||+||+++..|+.+.-+|.+.+|++++.+ +.+++++.|+.+++|++.-......
T Consensus 153 T~~~F~--~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~-- 226 (888)
T KOG0306|consen 153 TQALFL--NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKE-- 226 (888)
T ss_pred hHHhcc--CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccccc--
Confidence 999997 3567999999999999999999999999999999999999987 7899999999999999943211100
Q ss_pred hhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeee-----------------ecccccccCcc
Q psy4869 243 KDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALC-----------------ISSITLNIDDF 305 (2435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 305 (2435)
-......-....+-.++.+..+...... -+.. ....|.+.....++.... ...-. +..+
T Consensus 227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~-s~r~-~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e-~~~~- 302 (888)
T KOG0306|consen 227 TNRYISTKLRGTFIRQSKGREINLVTDF-SDRF-LVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE-NEDD- 302 (888)
T ss_pred ccccceeeccceeeeccCCceeEEeecC-cccE-EEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc-cccc-
Confidence 0000000000011111111111110000 0000 000011111111111000 00000 0000
Q ss_pred ccccchhhhhhhhh-c---------------c-------cCCCeEEEEeCccceeeeeecccccC-ccccccceeEeccc
Q psy4869 306 AFGIDTTQELRTRS-M---------------K-------RKNDEVTVYDREKNYKVQKVQKDVGR-TSNLFAPIMLLEGH 361 (2435)
Q Consensus 306 ~~~~~~~~~l~~~~-~---------------~-------~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~~~p~~~l~gH 361 (2435)
+...-..++.... + . -.++.+..|..+. ..+. +.........+.||
T Consensus 303 -v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~---------s~~~~p~~~~~~~i~~~GH 372 (888)
T KOG0306|consen 303 -VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLEN---------SGKTSPEADRTSNIEIGGH 372 (888)
T ss_pred -hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEecc---------CCCCCccccccceeeeccc
Confidence 0000000000000 0 0 1112222222211 0000 11111123567899
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEE
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIK 441 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~ 441 (2435)
+..|.+++++.+...+++|+ .+.|++|+..... .+..+. .+.+.+..|.|.+++++.|...|.+.+||+.+...+.
T Consensus 373 R~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~k-ciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLASGA-GESIKIWNRDTLK-CIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred hhheeEEEeecCceeeeecC-CCcEEEEEccCcc-eeEEec--cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence 99999999999888888875 5689999987542 233332 3489999999999999999999999999999999999
Q ss_pred EEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC-------Ccce------EeecCcccEEEEEECCCCCEEEEEe
Q psy4869 442 KMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK-------KNQA------VSMNNTYQVTSVAFNDTAECVLTGG 508 (2435)
Q Consensus 442 ~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~-------~~~~------~~~~~~~~v~sv~~sp~g~~l~sgs 508 (2435)
+++.|.+.+++++..|++ ..+++||.|.+|++||..- .+.. ..+.....|.|++++|||++|+++-
T Consensus 449 ti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 999999999999999987 4577999999999999641 1111 2234567899999999999999999
Q ss_pred cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEE
Q psy4869 509 IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588 (2435)
Q Consensus 509 ~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~ 588 (2435)
-|.+|+||=+++.+..-.+-||.-+|.|++.+||++.++|||.|+.|++|-+. =+.|-+.+-+|. +.|.++.
T Consensus 528 LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd----FGDCHKS~fAHd----DSvm~V~ 599 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD----FGDCHKSFFAHD----DSVMSVQ 599 (888)
T ss_pred ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc----cchhhhhhhccc----CceeEEE
Confidence 99999999999999999999999999999999999999999999999999987 356777777775 4789999
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 589 WSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 589 ~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
|-|...++.+++.|+.|+-||-+..+.+..+.+|...|+|++..|+|.+++++|.|..|++|+-.
T Consensus 600 F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 600 FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999874
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=492.41 Aligned_cols=538 Identities=22% Similarity=0.341 Sum_probs=452.1
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC-ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC----CeE
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD----QTL 429 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D----g~I 429 (2435)
..+|.+|...++..+|+|.|.|+|+|...|+|||||... +......++...++|.+|+|+.|+++|++.++. |.+
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 457899999999999999999999999999999999876 333445567778999999999999999998864 345
Q ss_pred EEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEe
Q psy4869 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGG 508 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs 508 (2435)
.+|| +|..+.++.||...|++|+|.|.+++++++|++|++|.+|+-...+....+ .|...|+|++|+|||+++++++
T Consensus 132 F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 132 FLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred EEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence 6666 899999999999999999999999999999999999999997666655555 5777899999999999999999
Q ss_pred cCCeEEEEECCCCcEEEEEe---cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeE
Q psy4869 509 IDNDIKMWDLRTNSVVQKLR---GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLL 585 (2435)
Q Consensus 509 ~dg~V~lwD~~s~~~v~~l~---~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~ 585 (2435)
.||+|.+||..+++.+..+. +|++.|.+|+|+||+.+++++|.|.++||||+.. .++++++.-.. ..+++..
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~----~slv~t~~~~~-~v~dqqv 284 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST----NSLVSTWPMGS-TVEDQQV 284 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec----cceEEEeecCC-chhceEE
Confidence 99999999999999999997 8999999999999999999999999999999984 57777776433 2567889
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeec
Q psy4869 586 RCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRS 665 (2435)
Q Consensus 586 ~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~ 665 (2435)
.|.|. +..|++.+.+|.|.+++...+.++..+.||+..|++|..+|++++|++|+.||.|.-|+...
T Consensus 285 G~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~----------- 351 (603)
T KOG0318|consen 285 GCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS----------- 351 (603)
T ss_pred EEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC-----------
Confidence 99998 67899999999999999999999999999999999999999999999999999999998740
Q ss_pred CceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeecc
Q psy4869 666 GKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVND 745 (2435)
Q Consensus 666 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~ 745 (2435)
|..
T Consensus 352 ---------------------------------------------------------------------g~~-------- 354 (603)
T KOG0318|consen 352 ---------------------------------------------------------------------GTS-------- 354 (603)
T ss_pred ---------------------------------------------------------------------ccc--------
Confidence 000
Q ss_pred ccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhccccc
Q psy4869 746 KHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPT 825 (2435)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (2435)
+++
T Consensus 355 -----------~~~------------------------------------------------------------------ 357 (603)
T KOG0318|consen 355 -----------DRL------------------------------------------------------------------ 357 (603)
T ss_pred -----------ccc------------------------------------------------------------------
Confidence 000
Q ss_pred ccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEecC
Q psy4869 826 IKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACA 905 (2435)
Q Consensus 826 ~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~ 905 (2435)
.-++|..+|++++.+..+.++.+|-+
T Consensus 358 ------------------------------------------------------~g~~h~nqI~~~~~~~~~~~~t~g~D 383 (603)
T KOG0318|consen 358 ------------------------------------------------------AGKGHTNQIKGMAASESGELFTIGWD 383 (603)
T ss_pred ------------------------------------------------------ccccccceEEEEeecCCCcEEEEecC
Confidence 01357778888888877888888888
Q ss_pred CcEEEEeCCCCcee--EEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCC
Q psy4869 906 SQVKIWNRPSLSCL--RTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPN 983 (2435)
Q Consensus 906 ~~V~Iwd~~~~~~~--~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~ 983 (2435)
..+++.++.....- ..++.+..+.+++..+++.++++...++.+.+-| ...+..++ -.-...+++++|++
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~---~~~~~~~~-~~y~~s~vAv~~~~---- 455 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQD---QTKVSSIP-IGYESSAVAVSPDG---- 455 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEec---CCcceeec-cccccceEEEcCCC----
Confidence 88998887655443 2356777888999999988888888777666533 33333333 23356788999886
Q ss_pred CcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCc
Q psy4869 984 VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTT 1063 (2435)
Q Consensus 984 ~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~ 1063 (2435)
..++.|+.||.|++|.+....+.. +....++.+.|++++||||+.+||++...+.
T Consensus 456 ------~~vaVGG~Dgkvhvysl~g~~l~e-------------------e~~~~~h~a~iT~vaySpd~~yla~~Da~rk 510 (603)
T KOG0318|consen 456 ------SEVAVGGQDGKVHVYSLSGDELKE-------------------EAKLLEHRAAITDVAYSPDGAYLAAGDASRK 510 (603)
T ss_pred ------CEEEEecccceEEEEEecCCcccc-------------------eeeeecccCCceEEEECCCCcEEEEeccCCc
Confidence 689999999999999987544211 1234567899999999999999999999999
Q ss_pred EEEEEcCCCeEEEEEec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCce-eEEEeccCCCEEEEEEccCCCEEEE
Q psy4869 1064 VKIFFLDTFKFFISLYG-HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC-HKSLLAHEDSVTGVTFVPKTHYFFT 1141 (2435)
Q Consensus 1064 V~i~d~~~~~~~~~l~~-h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~-~~~l~~h~~~V~~v~fsp~~~~l~s 1141 (2435)
|.+||+.+.+.....+. |.++|.+++|+|++.++|+|+.|..|.||+++.... +.....|...|+.+.|- ++..+++
T Consensus 511 vv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvS 589 (603)
T KOG0318|consen 511 VVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVS 589 (603)
T ss_pred EEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEe
Confidence 99999998877555554 999999999999999999999999999999976543 44445699999999998 6778999
Q ss_pred EeCCCcEEEEeCC
Q psy4869 1142 TSKDGRVKQWDAD 1154 (2435)
Q Consensus 1142 ~s~Dg~V~iwD~~ 1154 (2435)
.+.|..|++|++.
T Consensus 590 sG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 590 SGQDANIKVWNVT 602 (603)
T ss_pred ccCcceeEEeccc
Confidence 9999999999863
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=490.85 Aligned_cols=542 Identities=23% Similarity=0.320 Sum_probs=426.2
Q ss_pred cceeeeeeCCCCceEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEE
Q psy4869 13 EGSFNIIASPNCNVVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLA 91 (2435)
Q Consensus 13 ~~~~~~~~~~~~~v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~la 91 (2435)
+...-+-..| +-.+.||.++|+|.|+|+| .+|+|||||..+.+++. |+++..+.|+.. +|+|++|++++|
T Consensus 49 ~~~~~iYtEH-~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiL-----Knef~v~aG~I~---Di~Wd~ds~RI~ 119 (603)
T KOG0318|consen 49 PASVDIYTEH-AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHIL-----KNEFQVLAGPIK---DISWDFDSKRIA 119 (603)
T ss_pred ccceeeeccc-cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceee-----eeeeeecccccc---cceeCCCCcEEE
Confidence 4445555666 5667788999999999999 89999999999988886 899999999866 999999999998
Q ss_pred EEEcCC--eEEEEECCCCCeEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEe
Q psy4869 92 VAYTNG--SLKTFSLDTTDVISTFTGHKSAITVIQYDPLG-HRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFM 168 (2435)
Q Consensus 92 v~~~~G--~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g-~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~ 168 (2435)
+.+++. ..++|-++++..+.++.||...|++++|-|.. -+++|||+|++|.+|+-+..+....++.|...|.|++|+
T Consensus 120 avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys 199 (603)
T KOG0318|consen 120 AVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS 199 (603)
T ss_pred EEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC
Confidence 885432 26789999999999999999999999999987 569999999999999999999999999999999999998
Q ss_pred ecCCCcEEEEEeCCCcEEEEeccCCccccccc---cccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhh
Q psy4869 169 SQPGHHFVVSSAKDTFVKIWDADTGDCFKTMA---AHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDK 245 (2435)
Q Consensus 169 ~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~---~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~ 245 (2435)
|+ +.++++++.||+|.+||..+|+.+..+. +|.+.|++++|+||+..|+++|.|.++++||+.+.+.+.++....
T Consensus 200 PD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~ 277 (603)
T KOG0318|consen 200 PD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS 277 (603)
T ss_pred CC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC
Confidence 64 6789999999999999999999999997 999999999999999999999999999999999876554432221
Q ss_pred hhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCC
Q psy4869 246 LSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKND 325 (2435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 325 (2435)
- ++.|.+..+.. .-. .+....+|
T Consensus 278 ~--------------------v~dqqvG~lWq--------------kd~-----------------------lItVSl~G 300 (603)
T KOG0318|consen 278 T--------------------VEDQQVGCLWQ--------------KDH-----------------------LITVSLSG 300 (603)
T ss_pred c--------------------hhceEEEEEEe--------------CCe-----------------------EEEEEcCc
Confidence 0 11111111100 000 01122356
Q ss_pred eEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCC
Q psy4869 326 EVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHT 405 (2435)
Q Consensus 326 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~ 405 (2435)
.+.+++.... .+..++.||++.|+++..+|++.+|++|+.||.|.-|+...+......-.+|.
T Consensus 301 ~in~ln~~d~-----------------~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~ 363 (603)
T KOG0318|consen 301 TINYLNPSDP-----------------SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHT 363 (603)
T ss_pred EEEEecccCC-----------------ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccccc
Confidence 6666665432 25568999999999999999999999999999999999876544333337799
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE--EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcce
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK--MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQA 483 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~--l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~ 483 (2435)
..|.+++-+.. ..+++++.|.++++.++..+..... ++-...+ .+++..+++...++ ...++.+.+-|. ..+
T Consensus 364 nqI~~~~~~~~-~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP-~~lav~~d~~~avv-~~~~~iv~l~~~---~~~ 437 (603)
T KOG0318|consen 364 NQIKGMAASES-GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP-KGLAVLSDGGTAVV-ACISDIVLLQDQ---TKV 437 (603)
T ss_pred ceEEEEeecCC-CcEEEEecCCeEEEEecccCcccccceeecCCCc-eeEEEcCCCCEEEE-EecCcEEEEecC---Ccc
Confidence 99999998764 3688999999999999854322111 1211121 24555555534433 333333333332 334
Q ss_pred EeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE--EEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 484 VSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVV--QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 484 ~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v--~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
..........+++++|++..+++|+.||.|+||.+...+.. ..+..|.+.|++|+|+||+.+||++...+.+.+||+.
T Consensus 438 ~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 438 SSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred eeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence 44556778899999999999999999999999999876543 3557899999999999999999999999999999998
Q ss_pred CCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC-cEEEEecCCCCCeeEEEEcCCCCEEEE
Q psy4869 562 PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR-RIAYKLPGHNGSVNDVQFHPKEPIIMS 640 (2435)
Q Consensus 562 ~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~-~~~~~l~~h~~~V~~l~fspd~~~Las 640 (2435)
.... ....+.-|. ..|.+++|+|+..++|+||.|-.|.||+++.. +.+....+|...|+.|.|- +...|++
T Consensus 518 s~~~---~~~~w~FHt----akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvS 589 (603)
T KOG0318|consen 518 SREV---KTNRWAFHT----AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVS 589 (603)
T ss_pred cCce---ecceeeeee----eeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEe
Confidence 5322 222232343 47999999999999999999999999999876 4445555799999999997 4458999
Q ss_pred EECCCcEEEecCC
Q psy4869 641 ASSDKTIYLGESP 653 (2435)
Q Consensus 641 gs~Dg~I~vWd~~ 653 (2435)
.|.|..|++|.+.
T Consensus 590 sG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 590 SGQDANIKVWNVT 602 (603)
T ss_pred ccCcceeEEeccc
Confidence 9999999999875
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-52 Score=504.91 Aligned_cols=572 Identities=23% Similarity=0.399 Sum_probs=461.3
Q ss_pred EEeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCe
Q psy4869 30 TLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDV 109 (2435)
Q Consensus 30 ~~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~ 109 (2435)
..|+++|+.|++...+.|.+-|..+++-.. + .........+++++..||+.+|.+++..+.+++|++++++.
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l--~------s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~ 96 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIAL--P------SGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKL 96 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceec--c------cCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchH
Confidence 467999999999999999999998876431 1 11222344577899999999999999999999999999999
Q ss_pred EEEecC-CCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEE
Q psy4869 110 ISTFTG-HKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIW 188 (2435)
Q Consensus 110 ~~~l~g-H~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iW 188 (2435)
+..+.. |+++|.-++|+|.|.+||+|+.|+.|+|||+..+...+.|+||.+.|..+.|+|.....+|++|+.|++|++|
T Consensus 97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw 176 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW 176 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEE
Confidence 999999 9999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred eccCCc-cccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeE
Q psy4869 189 DADTGD-CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267 (2435)
Q Consensus 189 d~~tg~-~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 267 (2435)
|+++.. |+.++..|...|.++++.+++..+++++.|..+.+||+...+.... -++.+.++......++-...
T Consensus 177 nl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~---lp~ye~~E~vv~l~~~~~~~---- 249 (775)
T KOG0319|consen 177 NLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKT---LPLYESLESVVRLREELGGK---- 249 (775)
T ss_pred EcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhe---echhhheeeEEEechhcCCc----
Confidence 999655 5999999999999999999999999999999999999965544322 23444555554444421111
Q ss_pred EEEeecccccccCCccceEEEEEEeeeecccccc------cCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeee
Q psy4869 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLN------IDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKV 341 (2435)
Q Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~ 341 (2435)
.+ .....|...-.+.+............ +++++.... .........+.++.+||.+..
T Consensus 250 -----~~-~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~----~~~~l~vtaeQnl~l~d~~~l------ 313 (775)
T KOG0319|consen 250 -----GE-YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIES----MSQLLLVTAEQNLFLYDEDEL------ 313 (775)
T ss_pred -----ce-EEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccc----cCceEEEEccceEEEEEcccc------
Confidence 00 00011111122222111111000000 011100000 001112223444555544332
Q ss_pred cccccCccccccceeEecccCCcEEEEEE-CCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEE
Q psy4869 342 QKDVGRTSNLFAPIMLLEGHGGEIFCSKY-HPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHI 420 (2435)
Q Consensus 342 ~~~~~~~~~~~~p~~~l~gH~~~V~~l~f-spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L 420 (2435)
.+...+-|..+.|..++| .|+.++||.+++.+.+|++++.+.... .+.+|...|.++....+|.+|
T Consensus 314 -----------~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 314 -----------TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGHTEAVLSLDVWSSGDLL 380 (775)
T ss_pred -----------EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--EEeCchhheeeeeecccCcEE
Confidence 234457788999999987 467799999999999999998765433 789999999999966678899
Q ss_pred EEEeCCCeEEEEECCCCc----eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc----e-E-----ee
Q psy4869 421 FTCSTDQTLAVWDLEKGQ----RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ----A-V-----SM 486 (2435)
Q Consensus 421 ~s~s~Dg~I~vwd~~tg~----~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~----~-~-----~~ 486 (2435)
++|+.|.++++|.++++. ++....+|...|.+++++..+..+|+++|.|+++++|++...+. + . ..
T Consensus 381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 999999999999885442 44566799999999999888999999999999999999986221 1 1 11
Q ss_pred cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 487 NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 487 ~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
.|...|+|++++|+.+++++|+.|.+.+||+++..+....+.||+..|.||.|+|..+.++++|.|++|+||.+. .
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is----~ 536 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS----T 536 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec----c
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred CceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCc
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKT 646 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~ 646 (2435)
..|++++.||.. .|.++.|-.+|+.|++++.||-+++|+++++++++.+.+|++.|++++-+|...++++|+.||.
T Consensus 537 fSClkT~eGH~~----aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 537 FSCLKTFEGHTS----AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred ceeeeeecCccc----eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE
Confidence 689999999974 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC
Q psy4869 647 IYLGESP 653 (2435)
Q Consensus 647 I~vWd~~ 653 (2435)
|.+|.-.
T Consensus 613 i~~wkD~ 619 (775)
T KOG0319|consen 613 IIFWKDV 619 (775)
T ss_pred EEEeecC
Confidence 9999753
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=450.64 Aligned_cols=783 Identities=20% Similarity=0.289 Sum_probs=558.4
Q ss_pred cCcccCCCeEEEEEeCCCeEEEEeCCCCc-ceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCC
Q psy4869 453 CDPVRRGQLLIASGSDDCTVKVWDPRKKN-QAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS 531 (2435)
Q Consensus 453 v~~~~~~~~llasgs~Dg~I~vwD~~~~~-~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~ 531 (2435)
+.|.++|..++- .-.+.|.++|++..+ ....+.....|.+++.+|+|.+|++....|...+..+.....++.+. -+
T Consensus 20 l~ft~dG~sviS--PvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk 96 (893)
T KOG0291|consen 20 LVFTKDGNSVIS--PVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFN-FK 96 (893)
T ss_pred EEECCCCCEEEe--ccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEe-ec
Confidence 445666655443 234678999998654 34456788899999999999999999999999999998887777765 46
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCC----CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEE
Q psy4869 532 DTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP----GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYI 607 (2435)
Q Consensus 532 ~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~----~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~i 607 (2435)
.+|.+|+|||||+++|.+. .+.+.||..-.... .....+++.+|. ..+.++.|+.|.++|++|+.|-.+++
T Consensus 97 ~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~f----ddi~si~Ws~DSr~l~~gsrD~s~rl 171 (893)
T KOG0291|consen 97 RGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHF----DDITSIDWSDDSRLLVTGSRDLSARL 171 (893)
T ss_pred CccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCc----cceeEEEeccCCceEEeccccceEEE
Confidence 7899999999999999865 46889998643211 112334455554 47899999999999999999999999
Q ss_pred EECCCCcE--EEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEEe
Q psy4869 608 WDTTTRRI--AYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCH 685 (2435)
Q Consensus 608 wd~~s~~~--~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 685 (2435)
|+++..+- ...+.+|.+.|-++-|..+...|++.+.||.+.+|..+.... ..
T Consensus 172 ~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~---~~----------------------- 225 (893)
T KOG0291|consen 172 FGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPP---EL----------------------- 225 (893)
T ss_pred EEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCc---cc-----------------------
Confidence 99987665 567789999999999999999999999999999998862100 00
Q ss_pred cCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeeecCCceEEEEEE
Q psy4869 686 GNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYF 765 (2435)
Q Consensus 686 ~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (2435)
.. . ++.+| |
T Consensus 226 ----------------~~-----~------~kd~e--------------g------------------------------ 234 (893)
T KOG0291|consen 226 ----------------DK-----A------EKDEE--------------G------------------------------ 234 (893)
T ss_pred ----------------cc-----c------ccccc--------------c------------------------------
Confidence 00 0 00000 0
Q ss_pred eecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccceeEEeEEEecC
Q psy4869 766 CTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGG 845 (2435)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~ 845 (2435)
.+|++..+...| . . .+++=. ++
T Consensus 235 --------------------------------------~~d~~~~~~~Ee-k--~------------~~~~~~---k~-- 256 (893)
T KOG0291|consen 235 --------------------------------------SDDEEMDEDGEE-K--T------------HKIFWY---KT-- 256 (893)
T ss_pred --------------------------------------cccccccccchh-h--h------------cceEEE---EE--
Confidence 000000000000 0 0 010000 00
Q ss_pred ceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEecC-CcEEEEeCCCCceeEEEeC
Q psy4869 846 GEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDT 924 (2435)
Q Consensus 846 g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~-~~V~Iwd~~~~~~~~~l~~ 924 (2435)
..|| +...+..|+|.+|.+.-..||+|-. |...++.+....++..+..
T Consensus 257 --------------~k~~-----------------ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi 305 (893)
T KOG0291|consen 257 --------------KKHY-----------------LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI 305 (893)
T ss_pred --------------Eeee-----------------ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec
Confidence 0111 2222368999999999999999975 6777999999999988885
Q ss_pred C-CeEEEEEEecCCCEEEEEeC-CCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEE
Q psy4869 925 G-SYALSVCFVPGDRHVLVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVK 1002 (2435)
Q Consensus 925 ~-~~v~~vafspdg~~Lavg~~-dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~ 1002 (2435)
. ..+..++|+..|.+||.|+. -|.+.||+|++...+...++|.
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~----------------------------------- 350 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS----------------------------------- 350 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc-----------------------------------
Confidence 4 78899999999999999874 5899999998776665555554
Q ss_pred EEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCC
Q psy4869 1003 LWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK 1082 (2435)
Q Consensus 1003 lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~ 1082 (2435)
..+.|++++|||+++|+|+.||.|+|||...+-++.++..|+
T Consensus 351 --------------------------------------~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt 392 (893)
T KOG0291|consen 351 --------------------------------------DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT 392 (893)
T ss_pred --------------------------------------cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC
Confidence 345677777888888888888888888888888999999999
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec-cCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCcceeE
Q psy4869 1083 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA-HEDSVTGVTFVPKTHYFFTTSKDG-RVKQWDADNFERIV 1160 (2435)
Q Consensus 1083 ~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~-h~~~V~~v~fsp~~~~l~s~s~Dg-~V~iwD~~~~~~~~ 1160 (2435)
..|+.+.|+..|+.+++.+.||+|+.||+...+..+++.. ......+++..|.|..+++|+.|. .|.+|++++++.+.
T Consensus 393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD 472 (893)
T ss_pred CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee
Confidence 9999999999999999999999999999999998888875 345678899999999999999886 59999999998877
Q ss_pred EEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEE
Q psy4869 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1240 (2435)
Q Consensus 1161 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~v 1240 (2435)
.+. +|.++|.+++|+|++..|++|+.|.+||+||+-.......--.+...|..++|.|+|+.|+++..||.|.+
T Consensus 473 iLs------GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf 546 (893)
T KOG0291|consen 473 ILS------GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITF 546 (893)
T ss_pred hhc------CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEE
Confidence 764 99999999999999999999999999999998765433333367888999999999999999999999999
Q ss_pred EECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEE
Q psy4869 1241 WDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA 1320 (2435)
Q Consensus 1241 wD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 1320 (2435)
||......+..+....... ++. ......-.........+..+
T Consensus 547 ~d~~~~~q~~~IdgrkD~~---------~gR-----------------------------~~~D~~ta~~sa~~K~Ftti 588 (893)
T KOG0291|consen 547 FDIKEAVQVGSIDGRKDLS---------GGR-----------------------------KETDRITAENSAKGKTFTTI 588 (893)
T ss_pred EEhhhceeeccccchhhcc---------ccc-----------------------------cccceeehhhcccCCceEEE
Confidence 9998876665554322210 000 00000001112234578899
Q ss_pred EecCCcceeEEeecCCeEEEEEcccceEEEEecCCCC-C-------eEEEEEecCCCEEEEEeCCCcEEEEeCCC----C
Q psy4869 1321 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL-P-------VLSLDMSYDSTLIATGSGDRTVKVWGLDY----G 1388 (2435)
Q Consensus 1321 a~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~-~-------V~~la~spdg~~L~sGg~Dg~V~iwdl~~----g 1388 (2435)
++++||..++.|+....|.||++.++-++..++-..+ . +..=.+.+- |.+.+.|-++ +
T Consensus 589 ~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEf----------G~~~LiD~e~~~~e~ 658 (893)
T KOG0291|consen 589 CYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEF----------GNMDLIDTEESDLEG 658 (893)
T ss_pred EEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhcccccccc----------CCccccccccccccc
Confidence 9999999999999999999999999877776662111 0 111111111 2222222211 1
Q ss_pred ceEEEecc------------cccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEEEeecccccCCCCCccccccCc
Q psy4869 1389 DCHKSLLA------------HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNSVHLNSCP 1456 (2435)
Q Consensus 1389 k~~~~~~~------------h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 1456 (2435)
++-..+++ ..=.|..|.|+|.++.||.++.+| |.|+.+++.-..-.+. |.+
T Consensus 659 ~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~~FDPf~------------LD~---- 721 (893)
T KOG0291|consen 659 RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTILFDPFD------------LDV---- 721 (893)
T ss_pred cccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEEEecCCceEEcccc------------ccc----
Confidence 11111111 112589999999999999999987 7888887754333321 101
Q ss_pred cccccchhhhhHHHHHhhhhhhhhhccccccCCCCCCCchhHHHHhcccCCchhhhhhhceeeccccccceeeeeeechh
Q psy4869 1457 ALEASNDIAELLMECLATMKEYEVECKEMTAMGKPPPSLPPIMKALNVTSPRDYLMTVLSRIRSTDLLRHCQRFLVTGVL 1536 (2435)
Q Consensus 1457 ~~~~~~~~~~~~~~~~~~~~~~~~~pr~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~i~~~~~~g~~~~w~~~~~~ 1536 (2435)
+..|...+..-..++ ...++++
T Consensus 722 ------~vTPe~v~~al~~qe--------------------y~~Alvm-------------------------------- 743 (893)
T KOG0291|consen 722 ------DVTPESVREALREQE--------------------YLKALVM-------------------------------- 743 (893)
T ss_pred ------ccCHHHHHHHHhcch--------------------HHHHHHH--------------------------------
Confidence 101111111110011 1111111
Q ss_pred hhhhccccchhhccccceecccCCCCceeeeecCCchhhHHHhhhcCCccceeeeecCceeeeecCCCCccccccccccc
Q psy4869 1537 RKAYSTRLSKFERGQKKLIASDCPNGSKVYYVNNSTTDIQKEIMQHGPVQAKFYFQDGKFRIYSTDSPRRSTASTMWINK 1616 (2435)
Q Consensus 1537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1616 (2435)
|-||.+++= |+
T Consensus 744 ----slRLNe~~l------------------------------I~----------------------------------- 754 (893)
T KOG0291|consen 744 ----SLRLNEYKL------------------------------IK----------------------------------- 754 (893)
T ss_pred ----HHhcCHHHH------------------------------HH-----------------------------------
Confidence 122222211 11
Q ss_pred ccceeeeeeecccchhhhheeeeeechhhhHHHHHhHhhhhcCCCceEEEeeeeeeeeeeccCcc-cccchhhHHHHHHH
Q psy4869 1617 NACMKIIIKKFLFSSELEEVLLVLSLSQVTDLLTHLSSLLDSSHHRCELVIRVAVFLVRIHHGPL-TASKELLPVLQRLE 1695 (2435)
Q Consensus 1617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1695 (2435)
+++-.+.+.|+|-.--.||..|+..||++|-.++++.|| +|..-|-+=++|+-|-.+| .....+.+.|.-|+
T Consensus 755 ------evlesvp~~~Ie~V~~~Lp~~y~erll~~l~~~l~~s~H-ieF~l~W~~~il~~hG~~~~~~~~~~~~~~~~lq 827 (893)
T KOG0291|consen 755 ------EVLESVPIKDIELVASSLPTAYLERLLKALSRFLENSPH-IEFYLRWLRAILTYHGSSLKRRAETLLPALTSLQ 827 (893)
T ss_pred ------HHHHhCChhhhhhhhhcCcHHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhhccceehhhHHHHHH
Confidence 122234455777777789999999999999999999999 9999999999999999999 56677888888898
Q ss_pred HHHhcccccccC
Q psy4869 1696 QLASRRVEEIRT 1707 (2435)
Q Consensus 1696 ~~~~~~~~~~~~ 1707 (2435)
+.+.+..+.+-.
T Consensus 828 k~i~r~~~~l~k 839 (893)
T KOG0291|consen 828 KSIVRHIDDLSK 839 (893)
T ss_pred HHHHHHHHHHHH
Confidence 888888877643
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-47 Score=459.70 Aligned_cols=578 Identities=22% Similarity=0.355 Sum_probs=461.1
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCceeeE-EEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEec-
Q psy4869 368 SKYHPDGQYIASSGYDRQIFIWSVYGECENI-GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKG- 445 (2435)
Q Consensus 368 l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~-~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~- 445 (2435)
++|+++|+.|++...| .|.+-|+.++...+ .........+.+++..||+++|++++..+.+++|++.+|+.++.++.
T Consensus 25 ~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~ 103 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI 103 (775)
T ss_pred eeECCCCCEEEEecCc-eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc
Confidence 7999999999998766 46667776654422 12234567899999999999999999999999999999999999998
Q ss_pred cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCC--EEEEEecCCeEEEEECCCCc
Q psy4869 446 HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAE--CVLTGGIDNDIKMWDLRTNS 522 (2435)
Q Consensus 446 h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~--~l~sgs~dg~V~lwD~~s~~ 522 (2435)
|..++..++|.|.+ .++++|+.|+.+++||+..+.+...+. +++.|.++.|+|+-. .|++|..|+.|++||+++..
T Consensus 104 He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~ 182 (775)
T KOG0319|consen 104 HEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR 182 (775)
T ss_pred cCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc
Confidence 99999999999998 899999999999999999999999985 688999999999755 58899999999999999665
Q ss_pred E-EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCC-----CCEE
Q psy4869 523 V-VQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS-----GLYV 596 (2435)
Q Consensus 523 ~-v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spd-----g~~L 596 (2435)
. +..+..|...|++++|++|+..+++++.|..+.|||+.. .++.++..-.. .+-++.+-++ |.++
T Consensus 183 tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~----~~~l~~lp~ye-----~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 183 TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ----YKKLKTLPLYE-----SLESVVRLREELGGKGEYI 253 (775)
T ss_pred hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh----hhhhheechhh-----heeeEEEechhcCCcceEE
Confidence 5 788899999999999999999999999999999999963 34444443332 3455566555 6799
Q ss_pred EEecCCCeEEEEECCCCcEEEEecCC-CCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEec
Q psy4869 597 TAGSADKCVYIWDTTTRRIAYKLPGH-NGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVN 675 (2435)
Q Consensus 597 asgs~Dg~V~iwd~~s~~~~~~l~~h-~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 675 (2435)
++.+.+|.+++||.++++++...... ...+..+...+....++....|..+.++|.+
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~---------------------- 311 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDED---------------------- 311 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcc----------------------
Confidence 99999999999999999887654322 1112222222222222222333333322211
Q ss_pred CCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeeec
Q psy4869 676 DKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHG 755 (2435)
Q Consensus 676 ~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (2435)
T Consensus 312 -------------------------------------------------------------------------------- 311 (775)
T KOG0319|consen 312 -------------------------------------------------------------------------------- 311 (775)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccce
Q psy4869 756 NDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKI 835 (2435)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (2435)
|+ . +
T Consensus 312 --------------~l-------------------------------------------------~---i---------- 315 (775)
T KOG0319|consen 312 --------------EL-------------------------------------------------T---I---------- 315 (775)
T ss_pred --------------cc-------------------------------------------------E---E----------
Confidence 00 0 0
Q ss_pred eEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEe-cCCCcEEEEecC-CcEEEEeC
Q psy4869 836 KSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAF-SSDNLALVSACA-SQVKIWNR 913 (2435)
Q Consensus 836 ~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~-s~dg~~la~g~~-~~V~Iwd~ 913 (2435)
..+++|| ++.|..+.| .|+..+||++.+ ..+++|++
T Consensus 316 --~k~ivG~----------------------------------------ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~ 353 (775)
T KOG0319|consen 316 --VKQIVGY----------------------------------------NDEILDMKFLGPEESHLAVATNSPELRLYTL 353 (775)
T ss_pred --ehhhcCC----------------------------------------chhheeeeecCCccceEEEEeCCCceEEEec
Confidence 0011232 223333444 355667777775 79999999
Q ss_pred CCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCc----eeecccccccceeEEEEecCCCCCCCcCCcc
Q psy4869 914 PSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGE----ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQ 989 (2435)
Q Consensus 914 ~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~----~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~ 989 (2435)
.+..+-...-+...+.++..+.+|-+|+.|++|..+++|.+.++. .++...+|...|.+|+++..+ .
T Consensus 354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~---------a 424 (775)
T KOG0319|consen 354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG---------A 424 (775)
T ss_pred CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC---------c
Confidence 988877555577888888877788899999999999999885544 566678999999999997654 2
Q ss_pred eEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q psy4869 990 IQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFL 1069 (2435)
Q Consensus 990 ~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~ 1069 (2435)
..|++++.|+.+++|++...+. ... . ..........-|+..|+|++++|+.+++|+|+.|...+||++
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~----~~~-------~-~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKE----TAF-------P-IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred cEEEEecCCceEEEecCCCccc----ccc-------c-ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 5899999999999999864110 000 0 011111223456889999999999999999999999999999
Q ss_pred CCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEE
Q psy4869 1070 DTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1149 (2435)
Q Consensus 1070 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~ 1149 (2435)
+..+....+.||...|.++.|++..+.+++++.|++|+||.+.+..|++++.+|...|..+.|..++.+|++++.||.++
T Consensus 493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC
Q psy4869 1150 QWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1203 (2435)
Q Consensus 1150 iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t 1203 (2435)
+|++.+..+...+ ..|...|+++..++.+.++++|+.||.|.+|.=.+
T Consensus 573 lWnikt~eC~~tl------D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 573 LWNIKTNECEMTL------DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEeccchhhhhhh------hhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999887766 48999999999999999999999999999996433
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=429.87 Aligned_cols=562 Identities=21% Similarity=0.341 Sum_probs=429.7
Q ss_pred CCCceEEEEEeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEE
Q psy4869 22 PNCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKT 101 (2435)
Q Consensus 22 ~~~~v~~~~~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i 101 (2435)
..||+++ ++||+-|++..+++|.++|+++.... ...-.....|++++.+|+|..+++..+.|...+
T Consensus 16 r~Gnl~f----t~dG~sviSPvGNrvsv~dLknN~S~----------Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~l 81 (893)
T KOG0291|consen 16 RAGNLVF----TKDGNSVISPVGNRVSVFDLKNNKSY----------TLPLETRYNITRIALSPDGTLLLAVDERGRALL 81 (893)
T ss_pred ecCcEEE----CCCCCEEEeccCCEEEEEEccCCcce----------eEEeecCCceEEEEeCCCceEEEEEcCCCcEEE
Confidence 4567665 49999999999999999999865422 122234556899999999999999999999999
Q ss_pred EECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCe--------eEEEEecCCCcEEEEEEeecCCC
Q psy4869 102 FSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAEC--------GLHRLSGHKGVITDIRFMSQPGH 173 (2435)
Q Consensus 102 ~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~--------~~~~l~gH~~~V~~v~~~~~~~~ 173 (2435)
.++.....++.|. .+..|.|+.|+|+|.++|.|. ...+.||..+... ..+++.||...|.+|.|+ .+.
T Consensus 82 vs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws--~DS 157 (893)
T KOG0291|consen 82 VSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWS--DDS 157 (893)
T ss_pred EecccceeeEEEe-ecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEec--cCC
Confidence 9999888887766 678999999999999998875 4568899876533 346678999999999997 567
Q ss_pred cEEEEEeCCCcEEEEeccCCcc--ccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCc-cccchhhhhhhc
Q psy4869 174 HFVVSSAKDTFVKIWDADTGDC--FKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDI-DTEDKDKLSEQL 250 (2435)
Q Consensus 174 ~~l~S~s~Dg~I~iWd~~tg~~--~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~-~~~~~~~~~~~~ 250 (2435)
++|++||+|.++|||+++..+- ...+.+|.+.|.+.-|..+...+++.+.||.+.+|.....=.. ...+++.-....
T Consensus 158 r~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d 237 (893)
T KOG0291|consen 158 RLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDD 237 (893)
T ss_pred ceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccc
Confidence 8999999999999999987766 4556899999999999999999999999999999987732100 000000000000
Q ss_pred ceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEE
Q psy4869 251 NQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVY 330 (2435)
Q Consensus 251 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~ 330 (2435)
....-..+++.... ... ..+...+.... ..+.... ..+.......+..+|...+|
T Consensus 238 ~~~~~~~Eek~~~~-~~~---k~~k~~ln~~~--------~kvtaa~-------------fH~~t~~lvvgFssG~f~Ly 292 (893)
T KOG0291|consen 238 EEMDEDGEEKTHKI-FWY---KTKKHYLNQNS--------SKVTAAA-------------FHKGTNLLVVGFSSGEFGLY 292 (893)
T ss_pred ccccccchhhhcce-EEE---EEEeeeecccc--------cceeeee-------------ccCCceEEEEEecCCeeEEE
Confidence 00000000000000 000 00000000000 0000000 01111122334456666677
Q ss_pred eCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCC-CeEEEEecCCceeeEEEeeCCCCCee
Q psy4869 331 DREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYD-RQIFIWSVYGECENIGVMSGHTGAVM 409 (2435)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~D-g~I~iwd~~~~~~~~~~l~~h~~~V~ 409 (2435)
+... +.-++.+.--..+|..+.|+..|.+||.|+.. |.+-||++..+. .+...++|...+.
T Consensus 293 elP~-----------------f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-YVlKQQgH~~~i~ 354 (893)
T KOG0291|consen 293 ELPD-----------------FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-YVLKQQGHSDRIT 354 (893)
T ss_pred ecCC-----------------ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-eeeecccccccee
Confidence 6443 23344555566789999999999999999865 899999997653 4556789999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec--
Q psy4869 410 DLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-- 487 (2435)
Q Consensus 410 ~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-- 487 (2435)
+++++|||++|++|+.||.|+|||..+|-++.++..|+..|..+.|...+ +.+++.+-||+|+.||+.....-.++.
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P 433 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSP 433 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCC
Confidence 99999999999999999999999999999999999999999999998887 567799999999999999988877774
Q ss_pred CcccEEEEEECCCCCEEEEEecCC-eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 488 NTYQVTSVAFNDTAECVLTGGIDN-DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 488 ~~~~v~sv~~sp~g~~l~sgs~dg-~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
.+.+..|++.+|.|..+.+|+.|. .|++|++.+|+++..+.||.++|.+++|+|+|..|+++|+|++||+||+-..
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s--- 510 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS--- 510 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc---
Confidence 455678999999999999998885 5999999999999999999999999999999999999999999999998642
Q ss_pred CceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC--------------------CCCCe
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG--------------------HNGSV 626 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~--------------------h~~~V 626 (2435)
...+.++... ..++.+.|+|||+-|++...||.|.+||.+.+..+..+.| .....
T Consensus 511 ~~~vEtl~i~-----sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F 585 (893)
T KOG0291|consen 511 SGTVETLEIR-----SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF 585 (893)
T ss_pred CceeeeEeec-----cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce
Confidence 2233333322 2578999999999999999999999999987665543322 23678
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 627 NDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 627 ~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+.+++++||..|++||....|++|+++
T Consensus 586 tti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 586 TTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred EEEEEcCCCCEEEecCCcccEEEEECc
Confidence 999999999999999999999999997
|
|
| >KOG1542|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-50 Score=452.60 Aligned_cols=229 Identities=28% Similarity=0.449 Sum_probs=172.7
Q ss_pred ccCCCCCcccccccCCCCCCCCCcccccccc--cccCccCCC-CCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcc
Q psy4869 2128 EEQGVSPHSEKLSANEDPEEFPNEDVFEHTF--AEIPNIDHS-NQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCW 2204 (2435)
Q Consensus 2128 ~~~~vs~~~e~~~~~~~~~ef~~~~~~~~~~--~~~~~~~~~-~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw 2204 (2435)
-++|+++++ |||+|||+++++..+.. ......... ......||++||||+ +|+||||||||.|||||
T Consensus 113 A~yGvtqFS-----DlT~eEFkk~~l~~~~~~~~~~~~~~~~~~~~~~~lP~~fDWR~-----kgaVTpVKnQG~CGSCW 182 (372)
T KOG1542|consen 113 AEYGVTQFS-----DLTEEEFKKIYLGVKRRGSKLPGDAAEAPIEPGESLPESFDWRD-----KGAVTPVKNQGMCGSCW 182 (372)
T ss_pred cccCccchh-----hcCHHHHHHHhhccccccccCccccccCcCCCCCCCCcccchhc-----cCCccccccCCcCcchh
Confidence 356776666 99999999988754431 110011111 234567999999999 99999999999999999
Q ss_pred cCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCC
Q psy4869 2205 VSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMC 2284 (2435)
Q Consensus 2205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC 2284 (2435)
|||+++++|++++|+++.++. ||||+|+ ||+. .++||
T Consensus 183 --------------------------------AFS~tG~vEga~~i~~g~Lvs--LSEQeLv----DCD~-----~d~gC 219 (372)
T KOG1542|consen 183 --------------------------------AFSTTGAVEGAWAIATGKLVS--LSEQELV----DCDS-----CDNGC 219 (372)
T ss_pred --------------------------------hhhhhhhhhhHHHhhcCcccc--cchhhhh----cccC-----cCCcC
Confidence 999999999999999999988 9999999 7774 34689
Q ss_pred CCCChhhHHHHHHH-cCccCCCcccCCCCCc-ccccc-------------------CcccceeecccCCc-----ccccc
Q psy4869 2285 MGGDSAAAWMYWIN-AGLVDGGDYGTHDVSM-GRYIE-------------------GIGHAASVMGSSNP-----EVNNF 2338 (2435)
Q Consensus 2285 ~gg~~~~a~~~~~~-~Gi~~~~~y~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~-----~~~~~ 2338 (2435)
+||++.+||+|+++ .||..|.+|||++... .|... .+...++..||+.+ .++.|
T Consensus 220 ~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa~~mQ~Y 299 (372)
T KOG1542|consen 220 NGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDKSKIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINAKPMQFY 299 (372)
T ss_pred CCCChhHHHHHHHHhCCccccccCCccccCCCccccchhhceEEEeccEecCCCHHHHHHHHHhcCCeEEEEchHHHHHh
Confidence 99999999999665 5999999999987654 22211 11122334455544 44555
Q ss_pred eeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEE
Q psy4869 2339 EKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGE 2409 (2435)
Q Consensus 2339 ~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~ 2409 (2435)
..++.-..-..+....++|||||||||...-.+||||||||||+.|||+||+|+.||.|.|||++++.++.
T Consensus 300 rgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 300 RGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA 370 (372)
T ss_pred cccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence 55443221011222237899999999986337999999999999999999999999999999999987643
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=421.62 Aligned_cols=371 Identities=27% Similarity=0.506 Sum_probs=309.2
Q ss_pred eEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEE
Q psy4869 109 VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIW 188 (2435)
Q Consensus 109 ~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iW 188 (2435)
+-..+.||.+.|.|++|+|+|.+||||+.|.++|+||..++.+.++.+||...|.||+|+| ++..|+||+.||+|++|
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP--Dgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP--DGKKIASGSKDGSIRLW 184 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC--CcchhhccccCCeEEEe
Confidence 4457899999999999999999999999999999999999999999999999999999985 46779999999999999
Q ss_pred eccCCccc-cccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeE
Q psy4869 189 DADTGDCF-KTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267 (2435)
Q Consensus 189 d~~tg~~~-~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 267 (2435)
|.++|+++ +.+.+|...|.+++|.|-.
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------------------- 212 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------------------- 212 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc----------------------------------------------------
Confidence 99999875 5678888888888876520
Q ss_pred EEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccC
Q psy4869 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGR 347 (2435)
Q Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 347 (2435)
T Consensus 213 -------------------------------------------------------------------------------- 212 (480)
T KOG0271|consen 213 -------------------------------------------------------------------------------- 212 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC
Q psy4869 348 TSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ 427 (2435)
Q Consensus 348 ~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 427 (2435)
..|..++||+++.||.|+|||+..+ ..+..+.+|..+|+++.|-.+| +|++++.|+
T Consensus 213 ----------------------l~p~~r~las~skDg~vrIWd~~~~-~~~~~lsgHT~~VTCvrwGG~g-liySgS~Dr 268 (480)
T KOG0271|consen 213 ----------------------LVPPCRRLASSSKDGSVRIWDTKLG-TCVRTLSGHTASVTCVRWGGEG-LIYSGSQDR 268 (480)
T ss_pred ----------------------cCCCccceecccCCCCEEEEEccCc-eEEEEeccCccceEEEEEcCCc-eEEecCCCc
Confidence 0123457888888888888888654 3456788999999999998665 899999999
Q ss_pred eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEE
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sg 507 (2435)
+|++|+...|+..+.+++|...|+.++.+.+ +.+=+|..|.+=+-....+ +......... ....-..++.|++|
T Consensus 269 tIkvw~a~dG~~~r~lkGHahwvN~lalsTd--y~LRtgaf~~t~~~~~~~s-e~~~~Al~rY---~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 269 TIKVWRALDGKLCRELKGHAHWVNHLALSTD--YVLRTGAFDHTGRKPKSFS-EEQKKALERY---EAVLKDSGERLVSG 342 (480)
T ss_pred eEEEEEccchhHHHhhcccchheeeeeccch--hhhhccccccccccCCChH-HHHHHHHHHH---HHhhccCcceeEEe
Confidence 9999999999999999999999999886554 3344444433211111000 0000000000 01112345889999
Q ss_pred ecCCeEEEEECCC-CcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEE
Q psy4869 508 GIDNDIKMWDLRT-NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586 (2435)
Q Consensus 508 s~dg~V~lwD~~s-~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~ 586 (2435)
++|+++.+|+... .+++..+.+|..-|+.+.|+||++++|++|.|+.|++||-+ .++.+..++||.. .|+.
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~----tGk~lasfRGHv~----~VYq 414 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR----TGKFLASFRGHVA----AVYQ 414 (480)
T ss_pred cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC----Ccchhhhhhhccc----eeEE
Confidence 9999999999764 56899999999999999999999999999999999999998 5788999999964 7899
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 587 v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
++|+.|.++|++||.|.+++|||+++.++...++||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 415 vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 415 VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=415.80 Aligned_cols=372 Identities=28% Similarity=0.501 Sum_probs=296.2
Q ss_pred ccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEE
Q psy4869 64 EKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVL 143 (2435)
Q Consensus 64 ~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~i 143 (2435)
..+-...++||...|.+..|+|+|++||+|++|..+++||+++..+..+..||+..|.|++|+|||..||||+.||+|++
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 33444567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCeeE-EEEecCCCcEEEEEEeec---CCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEE
Q psy4869 144 WDVVAECGL-HRLSGHKGVITDIRFMSQ---PGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLI 219 (2435)
Q Consensus 144 Wd~~~~~~~-~~l~gH~~~V~~v~~~~~---~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~ 219 (2435)
||-.+++.+ ..|.||+..|++++|.|- +...+|+|+|.||.|+|||+..|.++..+.+|..+|.|++|-- ..+++
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliy 262 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIY 262 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEE
Confidence 998887754 678999999999999773 4556899999999999999999999999999999999999964 34899
Q ss_pred EeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccc
Q psy4869 220 SGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSIT 299 (2435)
Q Consensus 220 s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 299 (2435)
+||.|++|++|+...+..+..+. |+..|.....
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lk--------------------------------------GHahwvN~la--------- 295 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELK--------------------------------------GHAHWVNHLA--------- 295 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhc--------------------------------------ccchheeeee---------
Confidence 99999999999988765443221 1111111100
Q ss_pred cccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEE
Q psy4869 300 LNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIAS 379 (2435)
Q Consensus 300 ~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Las 379 (2435)
+.+...++............... + .+.... .-|. ...-..|..|++
T Consensus 296 ---------lsTdy~LRtgaf~~t~~~~~~~s---e-~~~~Al-------------~rY~--------~~~~~~~erlVS 341 (480)
T KOG0271|consen 296 ---------LSTDYVLRTGAFDHTGRKPKSFS---E-EQKKAL-------------ERYE--------AVLKDSGERLVS 341 (480)
T ss_pred ---------ccchhhhhccccccccccCCChH---H-HHHHHH-------------HHHH--------HhhccCcceeEE
Confidence 00111111111100000000000 0 000000 0000 011124689999
Q ss_pred EeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCC
Q psy4869 380 SGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRG 459 (2435)
Q Consensus 380 gs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~ 459 (2435)
|+.|+++.+|+-....+++..+.+|..-|+.+.|+||+++|++++.|+.|++||.++|+.+..++||-..
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~---------- 411 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA---------- 411 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce----------
Confidence 9999999999987776778888999999999999999999999999999999999999999999988654
Q ss_pred CeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEE
Q psy4869 460 QLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSL 539 (2435)
Q Consensus 460 ~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~ 539 (2435)
|+.++|+.|.++|++|+.|.++++||+++.++...+.||.+.|++++|
T Consensus 412 --------------------------------VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw 459 (480)
T KOG0271|consen 412 --------------------------------VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDW 459 (480)
T ss_pred --------------------------------eEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEe
Confidence 445667777788888888999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEE
Q psy4869 540 SPDGSYILSNAMDNTVRIWD 559 (2435)
Q Consensus 540 spdg~~las~s~Dg~I~lWd 559 (2435)
+|||.++++|+.|+.+++|.
T Consensus 460 spDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 460 SPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCceeecCCCceEEEeec
Confidence 99999999999999999995
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=380.27 Aligned_cols=309 Identities=62% Similarity=1.096 Sum_probs=299.7
Q ss_pred cccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE
Q psy4869 344 DVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC 423 (2435)
Q Consensus 344 ~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~ 423 (2435)
...+..+...|.+.+.||.+.|+.++|+|+|.+||+|+.|..|.+|++.+.++....+++|+++|..+.|..|++.|+++
T Consensus 29 ~~~rts~l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 29 GKQRTSSLQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSC 108 (338)
T ss_pred cccccccccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEe
Confidence 34455667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCE
Q psy4869 424 STDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAEC 503 (2435)
Q Consensus 424 s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~ 503 (2435)
+.|++++.||+++|+.++++++|...++.+.....++.++.++++|+++++||+|++..+..+..+.+++++.|...+..
T Consensus 109 gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~q 188 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQ 188 (338)
T ss_pred cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccc
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccC
Q psy4869 504 VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKN 583 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~ 583 (2435)
+.+|+-|+.|++||++.+.....+.||.+.|+.|..+|+|.++.+-+.|.++++||+|.+.+..+|+..+.+|.++++..
T Consensus 189 v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 189 VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 584 LLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 584 i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
.+.|+|+|+++++.+|+.|..+++||......++.++||.+.|+++.|||..++|.+++.|++|++.++
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999776
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=392.08 Aligned_cols=560 Identities=19% Similarity=0.253 Sum_probs=407.3
Q ss_pred EeEEEecCceEEEEEEecCCcccccccccCCCcccccceeee----eecCCCCceEEEEecCCCcEEEEecC---CcEEE
Q psy4869 838 VDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSI----HAQGHHSEVRALAFSSDNLALVSACA---SQVKI 910 (2435)
Q Consensus 838 l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~----~l~GH~~~V~~la~s~dg~~la~g~~---~~V~I 910 (2435)
|..|||..-.-..++-+.|- ...+.||.|+.+++-+.+.. -+..|..+++|+|||++|+|+|+|.- -.++|
T Consensus 29 L~kVlGlTv~~~~gLa~~p~--Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kV 106 (1080)
T KOG1408|consen 29 LQKVLGLTVKNANGLASVPC--SGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKV 106 (1080)
T ss_pred hHhhhceEeecCCccccccc--ccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCcccee
Confidence 33445544444455556665 34678899999887544333 23567789999999999999999974 58999
Q ss_pred EeCCCCceeEEEe-CCCeEEEEEEecCCCEEEE-EeC-CCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCC
Q psy4869 911 WNRPSLSCLRTID-TGSYALSVCFVPGDRHVLV-GTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLP 987 (2435)
Q Consensus 911 wd~~~~~~~~~l~-~~~~v~~vafspdg~~Lav-g~~-dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p 987 (2435)
|++....+++++. ++..+.|++|+|.++||+. |.. |-.|.+|||+..-..+.-+ -...|.+++|+.++
T Consensus 107 w~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~fsEdg-------- 177 (1080)
T KOG1408|consen 107 WSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAFSEDG-------- 177 (1080)
T ss_pred eeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEEccCC--------
Confidence 9999988887776 8899999999999999995 443 7778899987554433322 23478999999997
Q ss_pred cceEEEEEeCCCeEEEEEcccccc-------cccc-------cc--------------cccccccccceeeeeecccccc
Q psy4869 988 LQIQVVTGGGDKSVKLWQLELVSV-------NREA-------DE--------------ETKDVSRSHKVLSLLHTRTLKL 1039 (2435)
Q Consensus 988 ~~~~l~sgs~Dg~V~lW~l~~~~~-------~~~~-------~~--------------~~~~~~~~~~~l~~~~~~~~~~ 1039 (2435)
.+|++.+. .+|++|.++.... .... .+ ..-.+.....+..+...+.+..
T Consensus 178 --SYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDK 254 (1080)
T KOG1408|consen 178 --SYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDK 254 (1080)
T ss_pred --ceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhh
Confidence 57888766 9999999975541 1100 00 0000111111111111111110
Q ss_pred -----CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec---------------C---------CcCEEEEEE
Q psy4869 1040 -----EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG---------------H---------KLPVLSLDM 1090 (2435)
Q Consensus 1040 -----~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~---------------h---------~~~V~sl~~ 1090 (2435)
.--..|++. ..++|++|+.+|.|++|+..+.....++.- | --...++.|
T Consensus 255 WVqcRTTnAnCIcV--s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~F 332 (1080)
T KOG1408|consen 255 WVQCRTTNANCICV--SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQF 332 (1080)
T ss_pred hhhhhccccceeee--ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEe
Confidence 112334444 457999999999999998765544433320 0 112456788
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcee---EEEeccCCCEEEEEEccC-----------CCEEEEEeCCCcEEEEeCCCc
Q psy4869 1091 SYDSTLIATGSGDRTVKVWGLDYGDCH---KSLLAHEDSVTGVTFVPK-----------THYFFTTSKDGRVKQWDADNF 1156 (2435)
Q Consensus 1091 spdg~~L~Sgs~Dg~I~vWd~~t~~~~---~~l~~h~~~V~~v~fsp~-----------~~~l~s~s~Dg~V~iwD~~~~ 1156 (2435)
++....|...-.|..|+|||++.-+.+ ..+.-|...|+.|.--|- ...+++|+.|++||+||+...
T Consensus 333 det~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 333 DETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred cCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccc
Confidence 888889999999999999999765432 334458888888877661 235899999999999998752
Q ss_pred ceeEEEEE-------------------------------EEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc
Q psy4869 1157 ERIVTLHF-------------------------------FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1205 (2435)
Q Consensus 1157 ~~~~~~~~-------------------------------~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~ 1205 (2435)
..-..++. .........++.+++++|+|.+|++|..-|.+|+||+...+
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~ 492 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE 492 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh
Confidence 21111110 01112345579999999999999999999999999999999
Q ss_pred eeeEeeccCCCEEEEEEee---CCCEEEEEECCCcEEEEECCC-CceEEEEeeCCcc-----c--ccCceEEEEEECCCe
Q psy4869 1206 CHKSLLAHEDSVTGVTFVP---KTHYFFTTSKDGRVKQWDADN-FERIVTLHFNPNV-----Y--LPLQIQVVTGGGDKS 1274 (2435)
Q Consensus 1206 ~~~~~~~h~~~V~~i~~sp---d~~~lvsgs~Dg~I~vwD~~~-~~~v~~~~~~~~~-----~--~~~~~~lv~g~~d~~ 1274 (2435)
....+..|...|.|+.|+. ..++|++++.|+-|++||... ...+.++..+... | ...+.+++++|.|+.
T Consensus 493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 8889999999999999986 457899999999999999854 3444444333222 2 233467899999987
Q ss_pred EEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEec-
Q psy4869 1275 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY- 1353 (2435)
Q Consensus 1275 v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~- 1353 (2435)
+.+--.+.... ...........-+.-+..++..|..+++++++.|..|+||+++.+|....|+
T Consensus 573 imFr~~qk~~~----------------g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 573 IMFRVNQKASS----------------GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG 636 (1080)
T ss_pred hheehhccccC----------------ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc
Confidence 76543331110 0000111112235678899999999999999999999999999999999998
Q ss_pred --CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1354 --GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1354 --~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
+|.+....+...|.|.||++...|.++.++|+.+|+|++.+.+|...|+.+.|.+|.++|+|++.||.|.||.+..
T Consensus 637 s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 637 SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 5668899999999999999999999999999999999999999999999999999999999999999999999875
|
|
| >PTZ00203 cathepsin L protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=418.81 Aligned_cols=229 Identities=24% Similarity=0.421 Sum_probs=166.2
Q ss_pred cccccccCCCCCCCCCccccccc-cc--cc---CccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCc
Q psy4869 2135 HSEKLSANEDPEEFPNEDVFEHT-FA--EI---PNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQ 2208 (2435)
Q Consensus 2135 ~~e~~~~~~~~~ef~~~~~~~~~-~~--~~---~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~ 2208 (2435)
...|.++|||+|||++.++.... .. .. ...........+||++||||+ +|+|+||||||.|||||
T Consensus 81 lg~N~FaDlT~eEf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DWR~-----~g~VtpVkdQg~CGSCW---- 151 (348)
T PTZ00203 81 FGITKFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRKARADLSAVPDAVDWRE-----KGAVTPVKNQGACGSCW---- 151 (348)
T ss_pred EeccccccCCHHHHHHHhcCCCcccccccccccccccccccccccCCCCCcCCc-----CCCCCCccccCCCccHH----
Confidence 35578889999999866542110 10 00 001111112236899999999 89999999999999999
Q ss_pred CCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCC
Q psy4869 2209 PRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGD 2288 (2435)
Q Consensus 2209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~ 2288 (2435)
|||+++++|++++|++++.+. ||+|+|+ ||+. .+.||+||+
T Consensus 152 ----------------------------Afa~~~aiEs~~~i~~~~~~~--LSeQqLv----dC~~-----~~~GC~GG~ 192 (348)
T PTZ00203 152 ----------------------------AFSAVGNIESQWAVAGHKLVR--LSEQQLV----SCDH-----VDNGCGGGL 192 (348)
T ss_pred ----------------------------HHhhHHHHHHHHHHhcCCCcc--CCHHHHH----hccC-----CCCCCCCCC
Confidence 999999999999999988766 9999999 8874 256999999
Q ss_pred hhhHHHHHHHc---CccCCCcccCCCCCc---ccc----------ccC----------cccceeecccCCcc-----ccc
Q psy4869 2289 SAAAWMYWINA---GLVDGGDYGTHDVSM---GRY----------IEG----------IGHAASVMGSSNPE-----VNN 2337 (2435)
Q Consensus 2289 ~~~a~~~~~~~---Gi~~~~~y~~~~~~~---~~~----------~~~----------~~~~~~~~~~~~~~-----~~~ 2337 (2435)
+..||+|++++ |+++|.+|||..... .+. +.. +...+...||+.+. |..
T Consensus 193 ~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a~~f~~ 272 (348)
T PTZ00203 193 MLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFMS 272 (348)
T ss_pred HHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCcCHHHHHHHHHhCCCEEEEEEhhhhcC
Confidence 99999999864 578999999975432 111 000 01111223555443 445
Q ss_pred ceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEeecCcccc
Q psy4869 2338 FEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAKLEGIQL 2417 (2435)
Q Consensus 2338 ~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~~~~~~~ 2417 (2435)
|+++++. .|.. ..++|||+|||||.+ +|++|||||||||++|||+|||||+||.|+|||+.+++.. .+...++
T Consensus 273 Y~~GIy~-~c~~---~~~nHaVliVGYG~~-~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~--~~~~~~~ 345 (348)
T PTZ00203 273 YHSGVLT-SCIG---EQLNHGVLLVGYNMT-GEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSV--HVSQSPT 345 (348)
T ss_pred ccCceee-ccCC---CCCCeEEEEEEEecC-CCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEE--ecCCCCC
Confidence 5555432 2432 236899999999974 7899999999999999999999999999999999887753 5555444
Q ss_pred C
Q psy4869 2418 T 2418 (2435)
Q Consensus 2418 ~ 2418 (2435)
|
T Consensus 346 ~ 346 (348)
T PTZ00203 346 P 346 (348)
T ss_pred C
Confidence 3
|
|
| >KOG1543|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=413.75 Aligned_cols=229 Identities=28% Similarity=0.460 Sum_probs=172.3
Q ss_pred cccccccCCCCCCCCCcccccccccccCccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcccc
Q psy4869 2135 HSEKLSANEDPEEFPNEDVFEHTFAEIPNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGL 2214 (2435)
Q Consensus 2135 ~~e~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~ 2214 (2435)
...+.++|++.|||+..+....................+||++||||++| .+++||||||.|||||
T Consensus 70 ~g~n~~~d~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~DwR~~~----~~~~~vkdQg~CgsCW---------- 135 (325)
T KOG1543|consen 70 MGVNQFADLTTEEFKRKKTGKKPPEIKRDKFTEKLDGDDLPDSFDWRDKG----AVTPPVKDQGSCGSCW---------- 135 (325)
T ss_pred eccccccccchHHHHHhhccccCccccccccccccchhhCCCCccccccC----CcCCCcCCCCcCcchH----------
Confidence 34467789999999776654332211111111223355799999999965 4677799999999999
Q ss_pred ccceeeeccCCcccccccccccceehhHhhhhhhhhhcC-CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHH
Q psy4869 2215 KGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK-GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293 (2435)
Q Consensus 2215 ~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~-~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~ 2293 (2435)
|||++++||++++|+++ .++. ||+|||+ ||... ++.||+||++..||
T Consensus 136 ----------------------AFaa~~aie~~~~i~~g~~l~s--LSeq~lv----dC~~~----~~~GC~GG~~~~A~ 183 (325)
T KOG1543|consen 136 ----------------------AFAATGALEDRYNIKTGGKLLS--LSEQDLV----DCCGE----CGDGCNGGEPKNAF 183 (325)
T ss_pred ----------------------HHHHHHHHHHHHHHHhCCccCc--cChhhhh----hccCC----CCCCcCCCCHHHHH
Confidence 99999999999999999 4544 9999999 77753 45699999999999
Q ss_pred HHHHHcCccC-CCcccCCCCCcccccc-------------------CcccceeecccCCcccccceeeEEEEecCCCcC-
Q psy4869 2294 MYWINAGLVD-GGDYGTHDVSMGRYIE-------------------GIGHAASVMGSSNPEVNNFEKVIRLYSCEGSIN- 2352 (2435)
Q Consensus 2294 ~~~~~~Gi~~-~~~y~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 2352 (2435)
+|++++|+++ +.+|||.+.+..+... .+..++...||+.+.++.+. .|+.|+.+.+..
T Consensus 184 ~yi~~~G~~t~~~~Ypy~~~~~~C~~~~~~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~~GVy~~~ 262 (325)
T KOG1543|consen 184 KYIKKNGGVTECENYPYIGKDGTCKSNKKDKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYE-DFSLYKGGVYAEE 262 (325)
T ss_pred HHHHHhCCCCCCcCCCCcCCCCCccCCCccceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehh-hhhhccCceEeCC
Confidence 9999999998 9999997665432211 11222333567666666665 455555443221
Q ss_pred ---c-ccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEee
Q psy4869 2353 ---P-RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAK 2411 (2435)
Q Consensus 2353 ---~-~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~ 2411 (2435)
. .++|||+|||||+ +++.+|||||||||+.|||+|||||+||.|.|+|+..+.++.++
T Consensus 263 ~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 263 KGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPIK 324 (325)
T ss_pred CCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCCC
Confidence 1 4789999999998 78899999999999999999999999999999999888765543
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=368.13 Aligned_cols=600 Identities=18% Similarity=0.244 Sum_probs=417.8
Q ss_pred CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEE
Q psy4869 511 NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNA--MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588 (2435)
Q Consensus 511 g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s--~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~ 588 (2435)
..|.+||.+..+.-+.+..|..++++++|+++|+++++|- ....+++|++.. ...+..+..|.. .+.+++
T Consensus 58 CvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~----h~vVAEfvdHKY----~vtcva 129 (1080)
T KOG1408|consen 58 CVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAF----HGVVAEFVDHKY----NVTCVA 129 (1080)
T ss_pred cEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecc----ccchhhhhhccc----cceeee
Confidence 5688999998888888888999999999999999999976 678899999984 335666666653 789999
Q ss_pred EcCCCCEEEEecC--CCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecC
Q psy4869 589 WSVSGLYVTAGSA--DKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSG 666 (2435)
Q Consensus 589 ~spdg~~Lasgs~--Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 666 (2435)
|+|.++||++.+. |--|.+||.+-......- .-...|.+++|+.|+.++++++. ..|++|.++...+....
T Consensus 130 Fsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~Kykdp----- 202 (1080)
T KOG1408|consen 130 FSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDP----- 202 (1080)
T ss_pred ecCCCcEEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCC-----
Confidence 9999999998776 556888987644322211 23467999999999999999874 57899988622211111
Q ss_pred ceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccc
Q psy4869 667 KGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDK 746 (2435)
Q Consensus 667 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~ 746 (2435)
|.+.|++.+.+..
T Consensus 203 ----------------------------------------------------------------iPl~gRs~~lg~l--- 215 (1080)
T KOG1408|consen 203 ----------------------------------------------------------------IPLPGRSYFLGNL--- 215 (1080)
T ss_pred ----------------------------------------------------------------ccccchhhhcccc---
Confidence 1122222000000
Q ss_pred cceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccc
Q psy4869 747 HRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTI 826 (2435)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (2435)
..|+ ||. +......-.+
T Consensus 216 -------r~n~-------f~a-----------------------------vaCg~gicAe-------------------- 232 (1080)
T KOG1408|consen 216 -------RFNE-------FLA-----------------------------VACGVGICAE-------------------- 232 (1080)
T ss_pred -------ccch-------hhh-----------------------------hhhcCccccc--------------------
Confidence 0000 000 0000000000
Q ss_pred cccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEecC-
Q psy4869 827 KTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACA- 905 (2435)
Q Consensus 827 ~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~- 905 (2435)
.-+ .|.-+|-+ + ....++|.++.++-.....+|+.++.+ +|++||.
T Consensus 233 -------stf----ait~qGhL-------------v-------EFSsRRLLDKWVqcRTTnAnCIcVs~r--~I~cgCa~ 279 (1080)
T KOG1408|consen 233 -------STF----AITAQGHL-------------V-------EFSSRRLLDKWVQCRTTNANCICVSSR--LIACGCAK 279 (1080)
T ss_pred -------ceE----EEecccce-------------e-------eechhhhhhhhhhhhccccceeeeecc--eEEEeecc
Confidence 000 00001111 0 011123333334444556788888865 9999995
Q ss_pred CcEEEEeCCCCceeEEEeC-----------------------C--CeEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee
Q psy4869 906 SQVKIWNRPSLSCLRTIDT-----------------------G--SYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEIL 960 (2435)
Q Consensus 906 ~~V~Iwd~~~~~~~~~l~~-----------------------~--~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v 960 (2435)
+.|+||+..++..+.+++- . ..+.++.|.+....|.+..+|..|+|||+.+-+.+
T Consensus 280 g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv 359 (1080)
T KOG1408|consen 280 GMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV 359 (1080)
T ss_pred ceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccc
Confidence 8999999998877655541 0 12457889999999999999999999999875533
Q ss_pred ---ecccccccceeEEEEecCCCCCCC--cCCcceEEEEEeCCCeEEEEEcccccccccc------cccccccccc----
Q psy4869 961 ---EDIPAHSQELWSVAMLPDQFNPNV--YLPLQIQVVTGGGDKSVKLWQLELVSVNREA------DEETKDVSRS---- 1025 (2435)
Q Consensus 961 ---~~~~~h~~~V~sv~~s~d~~~~~~--~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~------~~~~~~~~~~---- 1025 (2435)
..+--|...||.|.-.|-..+... -+|. ..|++|+.|++||+|+++...-.... .+..+.++..
T Consensus 360 gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~-~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 360 GKCSSMLYHSACIWDVENLPCNVHSPTAACLPR-GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred cceeeeeeccceeeeeccccccccCcccccCCc-cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 234458889999987763211111 1243 35999999999999999763211110 0011111111
Q ss_pred ------cceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcC---CCCE
Q psy4869 1026 ------HKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY---DSTL 1096 (2435)
Q Consensus 1026 ------~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~sp---dg~~ 1096 (2435)
..........++....++.|++++|+|++||.|+.-|.++||++...+....+..|+..|.|+.|+. ..++
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHh
Confidence 1111111223344456899999999999999999999999999999999999999999999999986 3589
Q ss_pred EEEEECCCcEEEEEccCC-ceeEEEeccCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCcceeEEEEEEEeeccccc
Q psy4869 1097 IATGSGDRTVKVWGLDYG-DCHKSLLAHEDSVTGVTFVPKT--HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKL 1173 (2435)
Q Consensus 1097 L~Sgs~Dg~I~vWd~~t~-~~~~~l~~h~~~V~~v~fsp~~--~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~ 1173 (2435)
|++++.|.-|.|||+... .++.++.+|...|++|.|.-++ ..+++++.|+.|.+--.+.......+ ..........
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f-~r~t~t~~kt 597 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF-PRHTQTLSKT 597 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec-cccccccccc
Confidence 999999999999999543 5778889999999999999877 68899999987664333211111111 1111122356
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEe
Q psy4869 1174 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1253 (2435)
Q Consensus 1174 ~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~ 1253 (2435)
.++.++..|...++++++.|..|+|||++++++.+.|++..+ .
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~------------------~------------------- 640 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD------------------H------------------- 640 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc------------------C-------------------
Confidence 788999999999999999999999999999998888765221 0
Q ss_pred eCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee
Q psy4869 1254 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL 1333 (2435)
Q Consensus 1254 ~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs 1333 (2435)
++....+...|.|-|+|+..
T Consensus 641 ------------------------------------------------------------eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 641 ------------------------------------------------------------EGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred ------------------------------------------------------------CCceEEEEECCCccEEEEee
Confidence 11122334558888999999
Q ss_pred cCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1334 LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1387 (2435)
Q Consensus 1334 ~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~ 1387 (2435)
.|..+.+||+-+++++..+.+|...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 661 sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 661 SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999999999999999999999999999999999865
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=370.19 Aligned_cols=287 Identities=27% Similarity=0.495 Sum_probs=260.1
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCC
Q psy4869 114 TGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTG 193 (2435)
Q Consensus 114 ~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg 193 (2435)
.|-+++|..+.|++++.+|||||.+|.++||+......+++|.||...|.++.|+|..++..++||+.||+|++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 46679999999999999999999999999999999999999999999999999999765667999999999999999999
Q ss_pred ccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeec
Q psy4869 194 DCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIIN 273 (2435)
Q Consensus 194 ~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 273 (2435)
..+..+.+|...|-.++|+|+|.+|++++.|.+.++||++++..+
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El----------------------------------- 296 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL----------------------------------- 296 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh-----------------------------------
Confidence 999999999999999999999999999999999999999864210
Q ss_pred ccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCcccccc
Q psy4869 274 ELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFA 353 (2435)
Q Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 353 (2435)
T Consensus 297 -------------------------------------------------------------------------------- 296 (459)
T KOG0272|consen 297 -------------------------------------------------------------------------------- 296 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd 433 (2435)
....||...|++++|+|||.++++||.|..-||||++++. .+..+.+|..+|.+++|+|+|..|++|+.|++++|||
T Consensus 297 --L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 297 --LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred --HhhcccccccceeEecCCCceeeccCccchhheeecccCc-EEEEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence 1235999999999999999999999999999999999874 5678899999999999999999999999999999999
Q ss_pred CCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeE
Q psy4869 434 LEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDI 513 (2435)
Q Consensus 434 ~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V 513 (2435)
++..+.+..+.+|...|..|.|.|. .|.+|++++.|+++
T Consensus 374 LR~r~~ly~ipAH~nlVS~Vk~~p~-----------------------------------------~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 374 LRMRSELYTIPAHSNLVSQVKYSPQ-----------------------------------------EGYFLVTASYDNTV 412 (459)
T ss_pred ecccccceecccccchhhheEeccc-----------------------------------------CCeEEEEcccCcce
Confidence 9998888888888876665555543 45566777777777
Q ss_pred EEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy4869 514 KMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559 (2435)
Q Consensus 514 ~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWd 559 (2435)
+||..+++.+++.+.||.+.|.++++++|+..|++++.|+++++|.
T Consensus 413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 8888888999999999999999999999999999999999999995
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=371.10 Aligned_cols=664 Identities=17% Similarity=0.230 Sum_probs=479.7
Q ss_pred EEEEecCCcEEEEeCCCCceeEEEe-CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEec
Q psy4869 899 ALVSACASQVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLP 977 (2435)
Q Consensus 899 ~la~g~~~~V~Iwd~~~~~~~~~l~-~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~ 977 (2435)
.++..+.|.+.||++++++.+++++ ....+.++.=+|--..+|+|..+|+|.+++++.++.+..|+..-++|++++|..
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt 254 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT 254 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc
Confidence 3334456899999999999999998 668899999899888999999999999999999999999987678999999998
Q ss_pred CCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEE
Q psy4869 978 DQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV 1057 (2435)
Q Consensus 978 d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lav 1057 (2435)
|| ...+++|...|.+.+||++...+.. ...--+.+.|..+.|-|....|++
T Consensus 255 DG---------~p~las~~~~G~m~~wDLe~kkl~~--------------------v~~nah~~sv~~~~fl~~epVl~t 305 (910)
T KOG1539|consen 255 DG---------NPLLASGRSNGDMAFWDLEKKKLIN--------------------VTRNAHYGSVTGATFLPGEPVLVT 305 (910)
T ss_pred CC---------CeeEEeccCCceEEEEEcCCCeeee--------------------eeeccccCCcccceecCCCceEee
Confidence 87 2478888888999999997432111 111124678889999999999999
Q ss_pred EECCCcEEEEEcCCC----eEEEEEecCCcCEEEEEEc-CCCCEEEEEECCCcEEEEEccCC-------c--------ee
Q psy4869 1058 SLLDTTVKIFFLDTF----KFFISLYGHKLPVLSLDMS-YDSTLIATGSGDRTVKVWGLDYG-------D--------CH 1117 (2435)
Q Consensus 1058 g~~dg~V~i~d~~~~----~~~~~l~~h~~~V~sl~~s-pdg~~L~Sgs~Dg~I~vWd~~t~-------~--------~~ 1117 (2435)
++.|..+++|-.+++ +.++.-.||..|-.+|.|- .+|..+.+++.|++++.+++... + .+
T Consensus 306 a~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~ 385 (910)
T KOG1539|consen 306 AGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKV 385 (910)
T ss_pred ccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccc
Confidence 999999998876633 4566678999999999997 67899999999999999887321 1 00
Q ss_pred EEE---eccCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCccee-EEEEEEEeecccccCeEEEEEeCCCCEEE
Q psy4869 1118 KSL---LAHEDSVTGVTFVP-----KTHYFFTTSKDGRVKQWDADNFERI-VTLHFFISLYGHKLPVLSLDMSYDSTLIA 1188 (2435)
Q Consensus 1118 ~~l---~~h~~~V~~v~fsp-----~~~~l~s~s~Dg~V~iwD~~~~~~~-~~~~~~~~~~~h~~~V~~l~~s~dg~~l~ 1188 (2435)
... .-.-.+|..++|.. ..+.+.+.-.+...+.|+.++...- ..+. ...+......+++++.++.|++.+
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~CGNF~~ 464 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSFCGNFVF 464 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec-CccccccCcceEEEEEeccCceEE
Confidence 000 00112566666654 2345555566778999999876542 2221 112223457899999999999999
Q ss_pred EEeCCCcEEEEEccCCceeeEe---eccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceE
Q psy4869 1189 TGSGDRTVKVWGLDYGDCHKSL---LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQ 1265 (2435)
Q Consensus 1189 sgs~Dg~V~iwd~~t~~~~~~~---~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~ 1265 (2435)
.|...|.|-+|++.+|.....+ ..|.++|++++...-++.+++++.+|.+++||......+..+
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l------------- 531 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL------------- 531 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee-------------
Confidence 9999999999999999988888 489999999999988899999999999999999775433222
Q ss_pred EEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEccc
Q psy4869 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT 1345 (2435)
Q Consensus 1266 lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~ 1345 (2435)
.++..+.++..+.....||++..|-.|+++|..+
T Consensus 532 ----------------------------------------------~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 532 ----------------------------------------------RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred ----------------------------------------------ccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 2234556666667778899999999999999999
Q ss_pred ceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCC-CcEEE
Q psy4869 1346 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD-GRVKQ 1424 (2435)
Q Consensus 1346 ~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~D-g~V~l 1424 (2435)
.+.++.|.+|.+.|++++|||||++|++++.|+.|++||+.++.++-.+ .-..+.++|.|+|.|.+||++..| ..|++
T Consensus 566 ~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGIYL 644 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEECCCCCEEEEEEecCceEEE
Confidence 9999999999999999999999999999999999999999999998755 335689999999999999999999 67999
Q ss_pred EECCC-ceeEEEEeecccccCCCCCccccccCccccccchhhhhHHHHHhhhhhhhhhccccccCCCCCCCchhHHHHhc
Q psy4869 1425 WDADN-FERIVTLHICSCSLNSPMNSVHLNSCPALEASNDIAELLMECLATMKEYEVECKEMTAMGKPPPSLPPIMKALN 1503 (2435)
Q Consensus 1425 Wd~~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~~~~~~~~~~~~~p~~~~~~ 1503 (2435)
|--.. ++.+ .+. --+....-+.-..|.... ....+.....+..+ ++.++-.. +--+.+-+..+.
T Consensus 645 WsNkslF~~v-s~r-----~~~~~~~~~~v~lPst~~-~~d~e~~~~tLE~~-~e~i~y~~-------~eQldeeLvTlS 709 (910)
T KOG1539|consen 645 WSNKSLFKSV-STR-----AIPADYVPSWVMLPSTCD-EDDDEDDEVTLESN-DEDIKYSS-------PEQLDEELVTLS 709 (910)
T ss_pred EEchhHheec-ccc-----ccCcccccceeecCcccc-cccchhhhhhhhcc-ccccccCC-------hhHhChhhhhhc
Confidence 98764 3222 111 001111101111111111 11112222222222 11111000 001222222222
Q ss_pred ccCCchhh-hhhhceeeccccccceeeeeeechhhhhhccccchhhccccceecccCCCCceeeeecCCch------hhH
Q psy4869 1504 VTSPRDYL-MTVLSRIRSTDLLRHCQRFLVTGVLRKAYSTRLSKFERGQKKLIASDCPNGSKVYYVNNSTT------DIQ 1576 (2435)
Q Consensus 1504 ~~~p~~~~-~~~~~~i~~~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 1576 (2435)
.--...|- +-.++.|. +++||.+|..+|+-.++++|.-+++ +.+
T Consensus 710 ~lp~Srwq~Ll~LelIk-----------------------------~RnkPke~PK~pkkaPFFLp~~~s~g~v~e~~~~ 760 (910)
T KOG1539|consen 710 KLPRSRWQNLLNLELIK-----------------------------KRNKPKEPPKKPKKAPFFLPKVPSEGLVLETPAA 760 (910)
T ss_pred cCcHHHhhhcccHHHHH-----------------------------hcCCCCCCCCccccCCcccccCCcccccccCcch
Confidence 22122222 33344443 8899999999999999999854421 122
Q ss_pred HHhhhcCCccceeeeecCceeeeec---CCCCcccccccccccccceeeeeeecccchhhhheeeee-----echhhhHH
Q psy4869 1577 KEIMQHGPVQAKFYFQDGKFRIYST---DSPRRSTASTMWINKNACMKIIIKKFLFSSELEEVLLVL-----SLSQVTDL 1648 (2435)
Q Consensus 1577 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 1648 (2435)
.+++.+ -|..+++-.++ .++--.-+-..|+++++-..+.-||.+.+|.++..|-.| |+...+.|
T Consensus 761 ~~~~~~--------~~~~~ik~~~~L~~es~F~~~Lre~~~s~~~~~~~~~L~~~~psaiD~eiRsL~d~~~~~~~~~~F 832 (910)
T KOG1539|consen 761 EELNKE--------EDENKIKKLGLLELESSFTTLLREGKDSKDFLDAFALLKNLSPSAIDFEIRSLNDAGETIEEMVIF 832 (910)
T ss_pred hhhcch--------hhhhhhhccccccccchHHHHHhhccccccHHHHHHHHHhcCcchheeehhhhhccCcchHHHHHH
Confidence 222221 01112222111 122233344589999999999999999999999999999 67788899
Q ss_pred HHHhHhhhhcCCCceEEEeeeeeeeeeeccCcccccc---hhhHHHHHHHHHHhcccccc
Q psy4869 1649 LTHLSSLLDSSHHRCELVIRVAVFLVRIHHGPLTASK---ELLPVLQRLEQLASRRVEEI 1705 (2435)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 1705 (2435)
+++|...|....| +||++.|+..+||+|.--|..++ +|...|+.+.+--+.+|.++
T Consensus 833 i~~l~~~l~~k~n-FEL~qa~~slf~K~H~~~l~~~~~~~dl~e~l~~~~~v~~e~wq~l 891 (910)
T KOG1539|consen 833 IKMLTQMLKTKRN-FELVQAYMSLFLKSHGLVLWNHEGPEDLTEELQNWEEVQSEEWQRL 891 (910)
T ss_pred HHHHHHHhccccC-HHHHHHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998777 99999999999999999886555 66777777777666766554
|
|
| >PTZ00200 cysteine proteinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=408.86 Aligned_cols=182 Identities=27% Similarity=0.470 Sum_probs=143.6
Q ss_pred CCCccccCccCCCCCCCcccccCCC-CCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQG-ACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg-~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
+|++||||+ +|+|+|||||| .||||| |||+++++|++++|++
T Consensus 234 ~P~~~DWR~-----~g~vtpVkdQG~~CGSCW--------------------------------AFat~~aiEs~~~i~~ 276 (448)
T PTZ00200 234 TGEGLDWRR-----ADAVTKVKDQGLNCGSCW--------------------------------AFSSVGSVESLYKIYR 276 (448)
T ss_pred CCCCccCCC-----CCCCCCcccCCCccchHH--------------------------------HHhHHHHHHHHHHHhc
Confidence 699999999 89999999999 999999 9999999999999988
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcccc--------cc-----
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRY--------IE----- 2319 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~--------~~----- 2319 (2435)
+..+. ||+|+|+ ||.. .+.||+||++..||+|++++||++|.+|||.+....|. +.
T Consensus 277 ~~~~~--LSeQqLv----DC~~-----~~~GC~GG~~~~A~~yi~~~Gi~~e~~YPY~~~~~~C~~~~~~~~~i~~y~~~ 345 (448)
T PTZ00200 277 DKSVD--LSEQELV----NCDT-----KSQGCSGGYPDTALEYVKNKGLSSSSDVPYLAKDGKCVVSSTKKVYIDSYLVA 345 (448)
T ss_pred CCCee--cCHHHHh----hccC-----ccCCCCCCcHHHHHHHHhhcCccccccCCCCCCCCCCcCCCCCeeEecceEec
Confidence 77665 9999999 8874 35789999999999999999999999999976432221 00
Q ss_pred ---CcccceeecccCCccc------ccceeeEEEEecCCCcCcccceEEEEEEeccC-CCCcceEEEEccCCCCcCCCce
Q psy4869 2320 ---GIGHAASVMGSSNPEV------NNFEKVIRLYSCEGSINPRYIHSVKIIGWGKS-SQNEPYWLCTNSYNQGWGEQGL 2389 (2435)
Q Consensus 2320 ---~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~-~~g~~yWiikNSWG~~WG~~Gy 2389 (2435)
.+...+...+|+.+.+ ..|+++++...|+. .++|||+|||||.+ ++|.+|||||||||++|||+||
T Consensus 346 ~~~~~l~~~l~~GPV~v~i~~~~~f~~Yk~GIy~~~C~~----~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY 421 (448)
T PTZ00200 346 KGKDVLNKSLVISPTVVYIAVSRELLKYKSGVYNGECGK----SLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGY 421 (448)
T ss_pred CHHHHHHHHHhcCCEEEEeecccccccCCCCccccccCC----CCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCee
Confidence 0001112235554444 44444433223332 36899999999974 4688999999999999999999
Q ss_pred EEEEee---CcccccccceeE
Q psy4869 2390 FKIRRG---VNMCSIEDSVMA 2407 (2435)
Q Consensus 2390 ~~i~r~---~n~cgi~~~~~~ 2407 (2435)
|||+|+ .|.|||++.+++
T Consensus 422 ~ri~r~~~g~n~CGI~~~~~~ 442 (448)
T PTZ00200 422 MRLERTNEGTDKCGILTVGLT 442 (448)
T ss_pred EEEEeCCCCCCcCCcccccee
Confidence 999996 489999988764
|
|
| >PTZ00021 falcipain-2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=406.19 Aligned_cols=226 Identities=23% Similarity=0.376 Sum_probs=161.6
Q ss_pred ccccccCCCCCCCCCcccccccc--cc--c--C---ccC-----CCCCCCCCCCCccccCccCCCCCCCcccccCCCCCC
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTF--AE--I--P---NID-----HSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQ 2201 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~--~~--~--~---~~~-----~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~Cg 2201 (2435)
..|.++|||+|||+..++..... .. . + ... ........+|++||||+ .|+|+||||||.||
T Consensus 214 giNqFsDlT~EEF~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~-----~g~VtpVKdQG~CG 288 (489)
T PTZ00021 214 GMNRFGDLSFEEFKKKYLTLKSFDFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRL-----HNGVTPVKDQKNCG 288 (489)
T ss_pred eccccccCCHHHHHHHhccccccccccccccccccccccccccccccccccCCcccccccc-----CCCCCCcccccccc
Confidence 45677899999998766532211 00 0 0 000 00011112499999999 89999999999999
Q ss_pred CcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCC
Q psy4869 2202 SCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPM 2281 (2435)
Q Consensus 2202 sCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~ 2281 (2435)
||| |||+++++|++++|+++..+. ||+|+|+ ||+. .+
T Consensus 289 SCW--------------------------------AFAa~~alEs~~~I~~g~~v~--LSeQqLV----DCs~-----~n 325 (489)
T PTZ00021 289 SCW--------------------------------AFSTVGVVESQYAIRKNELVS--LSEQELV----DCSF-----KN 325 (489)
T ss_pred cHH--------------------------------HHHHHHHHHHHHHHHcCCCcc--cCHHHHh----hhcc-----CC
Confidence 999 999999999999999988766 9999999 8874 35
Q ss_pred CCCCCCChhhHHHHHHHc-CccCCCcccCCCCC-ccccc-----------------cCcccceeecccCCcccccceeeE
Q psy4869 2282 SMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVS-MGRYI-----------------EGIGHAASVMGSSNPEVNNFEKVI 2342 (2435)
Q Consensus 2282 ~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 2342 (2435)
.||+||++..||+|++++ ||++|.+|||.+.. ..|.. ..+..++...||+.+.++.+. .|
T Consensus 326 ~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~~~~~~~i~~y~~i~~~~lk~al~~~GPVsv~i~a~~-~f 404 (489)
T PTZ00021 326 NGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDRCKEKYKIKSYVSIPEDKFKEAIRFLGPISVSIAVSD-DF 404 (489)
T ss_pred CCCCCcchHhhhhhhhhccccCcccccCccCCCCCccccccccccceeeeEEEecHHHHHHHHHhcCCeEEEEEeec-cc
Confidence 789999999999999876 89999999997642 11110 011112223466665554432 34
Q ss_pred EEEecCCC---cCcccceEEEEEEeccCCC---------CcceEEEEccCCCCcCCCceEEEEeeC----ccccccccee
Q psy4869 2343 RLYSCEGS---INPRYIHSVKIIGWGKSSQ---------NEPYWLCTNSYNQGWGEQGLFKIRRGV----NMCSIEDSVM 2406 (2435)
Q Consensus 2343 ~~~~~~~~---~~~~~~Hav~iVGyg~~~~---------g~~yWiikNSWG~~WG~~Gy~~i~r~~----n~cgi~~~~~ 2406 (2435)
+.|..+.+ +...++|||+|||||.++. +.+|||||||||+.|||+|||||+|+. |+|||...+.
T Consensus 405 ~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~ 484 (489)
T PTZ00021 405 AFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAY 484 (489)
T ss_pred ccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccce
Confidence 44443321 1224689999999997521 357999999999999999999999986 5899998876
Q ss_pred EEEeec
Q psy4869 2407 AGEAKL 2412 (2435)
Q Consensus 2407 ~~~~~~ 2412 (2435)
+|.+
T Consensus 485 --yP~~ 488 (489)
T PTZ00021 485 --VPLI 488 (489)
T ss_pred --eEec
Confidence 4544
|
|
| >PTZ00049 cathepsin C-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=407.17 Aligned_cols=204 Identities=20% Similarity=0.329 Sum_probs=155.5
Q ss_pred CCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhh
Q psy4869 2170 TDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRIC 2249 (2435)
Q Consensus 2170 ~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~ 2249 (2435)
...+||++||||+.|++| ++|+||+|||.||||| |||++++||+|++
T Consensus 377 ~~~~LP~sfDWRd~~~~~-~~vtpVkdQG~CGSCW--------------------------------AFAat~alEsR~~ 423 (693)
T PTZ00049 377 EIDELPKNFTWGDPFNNN-TREYDVTNQLLCGSCY--------------------------------IASQMYAFKRRIE 423 (693)
T ss_pred ccccCCCCEecCcCCCCC-CcccCCCCCccCcHHH--------------------------------HHHHHHHHHHHHH
Confidence 346799999999999986 6799999999999999 9999999999999
Q ss_pred hhcCCCc--------CccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcccc----
Q psy4869 2250 IQSKGQV--------KPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRY---- 2317 (2435)
Q Consensus 2250 ~~~~~~~--------~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~---- 2317 (2435)
|++++.+ ...||+|+|+ ||+. .+.||+||++..|++|++++||++|.+|||......|.
T Consensus 424 Ia~~~~l~~~~~~~~~~~LS~QqLL----DCs~-----~nqGC~GG~~~~A~kya~~~GI~tEscYPY~a~~g~C~~~~~ 494 (693)
T PTZ00049 424 IALTKNLDKKYLNNFDDLLSIQTVL----SCSF-----YDQGCNGGFPYLVSKMAKLQGIPLDKVFPYTATEQTCPYQVD 494 (693)
T ss_pred HHhccccccccccccccCcCHHHhc----ccCC-----CCCCcCCCcHHHHHHHHHHCCCCcCCccCCcCCCCCCCCCCC
Confidence 9875321 2259999999 8874 35799999999999999999999999999964321110
Q ss_pred --------------------------------------------------------------ccCcccceeecccCCccc
Q psy4869 2318 --------------------------------------------------------------IEGIGHAASVMGSSNPEV 2335 (2435)
Q Consensus 2318 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 2335 (2435)
...++..+...||+.+.+
T Consensus 495 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsI 574 (693)
T PTZ00049 495 QSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASF 574 (693)
T ss_pred CccccccccccccccccccccccccccccccccccccccccceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEE
Confidence 001111122234554444
Q ss_pred ------ccceeeEEEE-------ecCCCc-C----------cccceEEEEEEeccCC-CCc--ceEEEEccCCCCcCCCc
Q psy4869 2336 ------NNFEKVIRLY-------SCEGSI-N----------PRYIHSVKIIGWGKSS-QNE--PYWLCTNSYNQGWGEQG 2388 (2435)
Q Consensus 2336 ------~~~~~~~~~~-------~~~~~~-~----------~~~~Hav~iVGyg~~~-~g~--~yWiikNSWG~~WG~~G 2388 (2435)
..|+++++.. .|.... + ..++|||+|||||+++ +|+ +|||||||||+.|||+|
T Consensus 575 da~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenG 654 (693)
T PTZ00049 575 EASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEG 654 (693)
T ss_pred EechhhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCc
Confidence 4445444331 132210 0 1368999999999753 464 89999999999999999
Q ss_pred eEEEEeeCcccccccceeEEEeecCcc
Q psy4869 2389 LFKIRRGVNMCSIEDSVMAGEAKLEGI 2415 (2435)
Q Consensus 2389 y~~i~r~~n~cgi~~~~~~~~~~~~~~ 2415 (2435)
||||+||.|.||||+.+.+++|++..-
T Consensus 655 YfKI~RG~N~CGIEs~a~~~~pd~~rg 681 (693)
T PTZ00049 655 YFKIIRGKNFSGIESQSLFIEPDFSRG 681 (693)
T ss_pred eEEEEcCCCccCCccceeEEeeecccc
Confidence 999999999999999999999999654
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=357.74 Aligned_cols=283 Identities=27% Similarity=0.454 Sum_probs=265.5
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccC--CCEEEEEeCCCeEEEEECCC
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD--GCHIFTCSTDQTLAVWDLEK 436 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~d--g~~L~s~s~Dg~I~vwd~~t 436 (2435)
-|-..+|..+.|++|+..||+|+.+|.+++|+.... ..+..+.+|...|.++.|+|. +..|++|+.||++++|++++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 366789999999999999999999999999998765 677889999999999999996 56899999999999999999
Q ss_pred CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeEEE
Q psy4869 437 GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKM 515 (2435)
Q Consensus 437 g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~l 515 (2435)
..++..+.+|...|..++|+|.| .+|++++.|.+-++||++++..+... .|...|.+++|++||.++++|+.|..-+|
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred CcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 89999999999999999999998 56789999999999999988765544 68889999999999999999999999999
Q ss_pred EECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC-CCC
Q psy4869 516 WDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV-SGL 594 (2435)
Q Consensus 516 wD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp-dg~ 594 (2435)
||+++++++..+.+|..+|.+|+|+|+|..|||||.|++++|||+|. .+++.++.+|.+ -|..+.|+| .|.
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~----r~~ly~ipAH~n----lVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM----RSELYTIPAHSN----LVSQVKYSPQEGY 401 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc----cccceecccccc----hhhheEecccCCe
Confidence 99999999999999999999999999999999999999999999994 566888989874 678899998 889
Q ss_pred EEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 595 YVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 595 ~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
+|++++.|++++||..+++.+++.+.||.+.|.++..++|+..|++++.|.++++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999999999999999999999999999999995
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=349.06 Aligned_cols=622 Identities=19% Similarity=0.266 Sum_probs=421.9
Q ss_pred eEecccCCcEEEEEECCCCC---EEEEEeCCCeEEEEecC-CceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQ---YIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~---~Lasgs~Dg~I~iwd~~-~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~v 431 (2435)
..+.||.++|+|+.|-|+.. +|++|+.|++|++|.++ .....+..+.+|...+.++.= ....+.+...|+.+.+
T Consensus 48 t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a--~~~~~~~~~ad~~v~v 125 (764)
T KOG1063|consen 48 TTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVA--RSSVMTCKAADGTVSV 125 (764)
T ss_pred EeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEe--eeeEEEeeccCceEEE
Confidence 46789999999999999877 89999999999999998 444556667777766666542 2223333378999999
Q ss_pred EECCCCc--eEEEEecc--CccccccCccc-CCCeEEEEEeCCCeEEEEeCCCCcceE--ee-cCcccEEEEEECCCCC-
Q psy4869 432 WDLEKGQ--RIKKMKGH--STFVNSCDPVR-RGQLLIASGSDDCTVKVWDPRKKNQAV--SM-NNTYQVTSVAFNDTAE- 502 (2435)
Q Consensus 432 wd~~tg~--~v~~l~~h--~~~v~sv~~~~-~~~~llasgs~Dg~I~vwD~~~~~~~~--~~-~~~~~v~sv~~sp~g~- 502 (2435)
||.+..+ +...+.-. .....++++.+ ++..+++.|+.+..|.++.-...+... .+ .|...|.+++|...+.
T Consensus 126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~ 205 (764)
T KOG1063|consen 126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGD 205 (764)
T ss_pred eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCC
Confidence 9985554 22222222 22234556666 556678888888899998766443322 22 6888999999986544
Q ss_pred --EEEEEecCCeEEEEECCCCc---------------------EEEE----------EecCCCCEEEEEEcCCCCEEEEE
Q psy4869 503 --CVLTGGIDNDIKMWDLRTNS---------------------VVQK----------LRGHSDTVTGLSLSPDGSYILSN 549 (2435)
Q Consensus 503 --~l~sgs~dg~V~lwD~~s~~---------------------~v~~----------l~~h~~~V~~i~~spdg~~las~ 549 (2435)
+|++++.|..|+||.+.-+. .... +.||.+.|+++.|+|.+..|+++
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA 285 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA 285 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence 78899999999999864222 1111 23899999999999999999999
Q ss_pred ECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC---CcEEEEecCCCCCe
Q psy4869 550 AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT---RRIAYKLPGHNGSV 626 (2435)
Q Consensus 550 s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s---~~~~~~l~~h~~~V 626 (2435)
|.|.++.+|.......--.....+ |.......+...+.|+|+++.+++-+.-|-.++|..+. ......+.||.+.|
T Consensus 286 SaDksmiiW~pd~~tGiWv~~vRl-Ge~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V 364 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTGIWVDVVRL-GEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV 364 (764)
T ss_pred ccCcceEEEecCCccceEEEEEEe-ecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence 999999999876421111111222 22112224678999999999999999999999998433 24556678999999
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCce-e---eEEEecCCCCeEEEEecCCceEEeeeeccCCCC
Q psy4869 627 NDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKG-R---VHTMVNDKHRQILCCHGNDNVVDLFYFCTKDES 702 (2435)
Q Consensus 627 ~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~ 702 (2435)
.+|+|+|.|.+|.+.|.|.+-|++-.-.++..+.++-|...+ . ...+++. +...+.++++..+++|+...
T Consensus 365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~--~~~FVSgAdEKVlRvF~aPk---- 438 (764)
T KOG1063|consen 365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE--DLQFVSGADEKVLRVFEAPK---- 438 (764)
T ss_pred eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC--CceeeecccceeeeeecCcH----
Confidence 999999999999999999999998766555666676665432 2 2233333 66778889999999988642
Q ss_pred chhHHHHHHhhcc---ccccCCcccccccccccccCCCeeeeeeccccceEEeeecCCceEEEEEEeecCCchHHHHHHH
Q psy4869 703 STRCRKRLRKLKK---KEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRL 779 (2435)
Q Consensus 703 ~~~~~k~~~k~~~---k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (2435)
...+.+..... +...|+|.....+ .-| .+|+.. | -+
T Consensus 439 --~fv~~l~~i~g~~~~~~~~~p~gA~Vp----aLG------------------LSnKa~---~--~~------------ 477 (764)
T KOG1063|consen 439 --SFVKSLMAICGKCFKGSDELPDGANVP----ALG------------------LSNKAF---F--PG------------ 477 (764)
T ss_pred --HHHHHHHHHhCccccCchhcccccccc----ccc------------------ccCCCC---c--cc------------
Confidence 33333333322 2223333111000 111 111111 0 00
Q ss_pred HHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccceeEEeEEEecCceEEEEEEecCCcc
Q psy4869 780 RKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSL 859 (2435)
Q Consensus 780 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~ 859 (2435)
+.+..++ ...+.+.+++--| +.+.+|.-
T Consensus 478 ----------e~~~G~~---------------~~~~~et~~~~~p--------------------------~~L~ePP~- 505 (764)
T KOG1063|consen 478 ----------ETNTGGE---------------AAVCAETPLAAAP--------------------------CELTEPPT- 505 (764)
T ss_pred ----------ccccccc---------------cceeeecccccCc--------------------------hhccCCCh-
Confidence 0000000 0001111111101 00111211
Q ss_pred cccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEecC------CcEEEEeCCCCceeEEEe-CCCeEEEEE
Q psy4869 860 ELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACA------SQVKIWNRPSLSCLRTID-TGSYALSVC 932 (2435)
Q Consensus 860 ~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~------~~V~Iwd~~~~~~~~~l~-~~~~v~~va 932 (2435)
+.+.....-++ ...+|+||--.|.||+.+|+|.++|++|. +.|+||+..+..+...++ +...+..++
T Consensus 506 EdqLq~~tLwP------Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 506 EDQLQQNTLWP------EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred HHHHHHhccch------hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence 11111000011 12257999999999999999999999985 689999999998888776 888999999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCce----eecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEccc
Q psy4869 933 FVPGDRHVLVGTKDGRLLIVDIGAGEI----LEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLEL 1008 (2435)
Q Consensus 933 fspdg~~Lavg~~dg~V~vwd~~sg~~----v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~ 1008 (2435)
|||||++|+..+.|..+.+|..+.+.. ....++|..-||+..|+|+. ..|+|+++|..|++|....
T Consensus 580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde----------~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE----------KYFATASRDKKVKVWEEPD 649 (764)
T ss_pred ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc----------ceeEEecCCceEEEEeccC
Confidence 999999999999999999999876542 23368999999999999996 4699999999999999753
Q ss_pred ccccccccccccccccccceeeeeeccccccCCCEEEEEEcCC-----CCEEEEEECCCcEEEEEcCC-------C--eE
Q psy4869 1009 VSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD-----SKLLAVSLLDTTVKIFFLDT-------F--KF 1074 (2435)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd-----g~~Lavg~~dg~V~i~d~~~-------~--~~ 1074 (2435)
.. .+.+ .+...+++...|+++++.|- +..+++|.+.|.|.+|.... + ..
T Consensus 650 ~~--------d~~i---------~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~ 712 (764)
T KOG1063|consen 650 LR--------DKYI---------SRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNL 712 (764)
T ss_pred ch--------hhhh---------hhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeee
Confidence 21 0000 01134567889999998872 34889999999999998651 1 11
Q ss_pred EE---EEecCCcCEEEEEEcCC----------CCEEEEEECCCcEEEEEcc
Q psy4869 1075 FI---SLYGHKLPVLSLDMSYD----------STLIATGSGDRTVKVWGLD 1112 (2435)
Q Consensus 1075 ~~---~l~~h~~~V~sl~~spd----------g~~L~Sgs~Dg~I~vWd~~ 1112 (2435)
.. ...+|...|+-+.|.|. ...|++|+.|..++++++.
T Consensus 713 ~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 713 DTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 11 12357788999999974 1357999999999999864
|
|
| >cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=380.36 Aligned_cols=196 Identities=27% Similarity=0.495 Sum_probs=150.0
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||++|+. .++|+||||||.||+|| |||++++||++++|+++
T Consensus 1 lP~~fDwr~~~~~-~~~v~~v~dQg~CGsCw--------------------------------Afa~~~~ies~~~i~~~ 47 (243)
T cd02621 1 LPKSFDWGDVNNG-FNYVSPVRNQGGCGSCY--------------------------------AFASVYALEARIMIASN 47 (243)
T ss_pred CCCcccccccCCC-CcccccCCCCCcCccHH--------------------------------HHHHHHHHHHHHHHHhC
Confidence 7999999997764 34799999999999999 99999999999999877
Q ss_pred C----CcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCC-CCccccc----------
Q psy4869 2254 G----QVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHD-VSMGRYI---------- 2318 (2435)
Q Consensus 2254 ~----~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~-~~~~~~~---------- 2318 (2435)
+ .....||+|+|+ ||.. .+.||+||++..|++|++++|+++|.+|||.. ....+..
T Consensus 48 ~~~~~~~~~~lS~q~l~----dC~~-----~~~GC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~ 118 (243)
T cd02621 48 KTDPLGQQPILSPQHVL----SCSQ-----YSQGCDGGFPFLVGKFAEDFGIVTEDYFPYTADDDRPCKASPSECRRYYF 118 (243)
T ss_pred CCCccccCcccCHHHhh----hhcC-----CCCCCCCCCHHHHHHHHHhcCcCCCceeCCCCCCCCCCCCCccccccccc
Confidence 6 112349999999 8864 24689999999999999999999999999976 2211100
Q ss_pred ---------------cCcccceeecccCCcc------cccceeeEEEEe-----cCCCc-----CcccceEEEEEEeccC
Q psy4869 2319 ---------------EGIGHAASVMGSSNPE------VNNFEKVIRLYS-----CEGSI-----NPRYIHSVKIIGWGKS 2367 (2435)
Q Consensus 2319 ---------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~-----~~~~~Hav~iVGyg~~ 2367 (2435)
..++..+...+|+.+. |..|+.+++... |.... ...++|||+|||||++
T Consensus 119 ~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~ 198 (243)
T cd02621 119 SDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGED 198 (243)
T ss_pred cceeEcccccccCCHHHHHHHHHHcCCEEEEEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeecc
Confidence 0111122234555444 444555443322 32210 1146899999999986
Q ss_pred C-CCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEee
Q psy4869 2368 S-QNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAK 2411 (2435)
Q Consensus 2368 ~-~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~ 2411 (2435)
. +|++|||||||||++|||+|||||+||.|.|||++++++++|.
T Consensus 199 ~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~~~~~ 243 (243)
T cd02621 199 EIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFAYPI 243 (243)
T ss_pred CCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccceEeeccC
Confidence 4 4889999999999999999999999999999999999998873
|
Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc |
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=325.65 Aligned_cols=290 Identities=23% Similarity=0.424 Sum_probs=265.4
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
....+|+||.+.|+++.|++|.++|++++.||++.|||..+..+ .+.+......|..++|+|.|+.+++|+.|+.+.||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc-eeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 34578999999999999999999999999999999999876543 34566678999999999999999999999999999
Q ss_pred ECCCC------ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECC-CCCEE
Q psy4869 433 DLEKG------QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFND-TAECV 504 (2435)
Q Consensus 433 d~~tg------~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp-~g~~l 504 (2435)
++.+. +..+.+.+|...+.+|.|.++ ..|++++.|.+..+||+++++.+..+ .|...|.++.+.| +++.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 99754 455678999999999999885 46789999999999999999998888 5888999999999 99999
Q ss_pred EEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCe
Q psy4869 505 LTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL 584 (2435)
Q Consensus 505 ~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i 584 (2435)
++|+.|+..+|||+|.+..++.|.+|...|++|+|.|+|.-+++|+.|+++|+||+| ..+.+..+.... ...++
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR----aD~~~a~ys~~~--~~~gi 276 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR----ADQELAVYSHDS--IICGI 276 (343)
T ss_pred EecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec----CCcEEeeeccCc--ccCCc
Confidence 999999999999999999999999999999999999999999999999999999999 456677776433 34589
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 585 LRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 585 ~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
.+++||..|++|++|..|.++.+||.-.++.+..+.||.+.|.+|..+|||..|++|+.|.+++||.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999994
|
|
| >cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=371.43 Aligned_cols=193 Identities=25% Similarity=0.443 Sum_probs=147.1
Q ss_pred CCCccccCccCCCCCCCcccccCCC---CCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhh
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQG---ACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICI 2250 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg---~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~ 2250 (2435)
||++||||++++ .++|+|||||| .||||| |||++++||++++|
T Consensus 1 lP~~~Dwr~~~~--~~~v~~vk~Qg~~~~CGsCw--------------------------------Afa~~~aies~~~i 46 (239)
T cd02698 1 LPKSWDWRNVNG--VNYVSPTRNQHIPQYCGSCW--------------------------------AHGSTSALADRINI 46 (239)
T ss_pred CCCCcccccCCC--CcccCccccCCCCCCCCcch--------------------------------HHHhHHHHHHHHHH
Confidence 799999999332 23899999998 899999 99999999999999
Q ss_pred hcCCCc-CccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcccc------------
Q psy4869 2251 QSKGQV-KPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRY------------ 2317 (2435)
Q Consensus 2251 ~~~~~~-~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~------------ 2317 (2435)
++++.. ...||+|+|+ ||+. +.||+||++..||+|++++|+++|.+|||......+.
T Consensus 47 ~~~~~~~~~~lS~Q~ll----dC~~------~~gC~GG~~~~a~~~~~~~Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~ 116 (239)
T cd02698 47 ARKGAWPSVYLSVQVVI----DCAG------GGSCHGGDPGGVYEYAHKHGIPDETCNPYQAKDGECNPFNRCGTCNPFG 116 (239)
T ss_pred HHCCCCCCcccCHHHHH----hCCC------CCCccCcCHHHHHHHHHHcCcCCCCeeCCcCCCCCCcCCCCCCCcccCc
Confidence 876432 2349999999 8874 4689999999999999999999999999965321100
Q ss_pred ------------c---------cCcccceeecccCCcccccceeeEEEEecCCC----cCcccceEEEEEEeccCCCCcc
Q psy4869 2318 ------------I---------EGIGHAASVMGSSNPEVNNFEKVIRLYSCEGS----INPRYIHSVKIIGWGKSSQNEP 2372 (2435)
Q Consensus 2318 ------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Hav~iVGyg~~~~g~~ 2372 (2435)
+ ..++..+...+|+.+.+..+. .|+.|..+.+ ....++|||+|||||++++|++
T Consensus 117 ~c~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~GPV~v~i~~~~-~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~ 195 (239)
T cd02698 117 ECFAIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCGIMATE-ALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVE 195 (239)
T ss_pred ccccccccceEEeeeceecCCHHHHHHHHHHcCCEEEEEEecc-cccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCE
Confidence 0 001112233455554444433 2333332211 1234689999999998655899
Q ss_pred eEEEEccCCCCcCCCceEEEEeeC-----cccccccceeEEEee
Q psy4869 2373 YWLCTNSYNQGWGEQGLFKIRRGV-----NMCSIEDSVMAGEAK 2411 (2435)
Q Consensus 2373 yWiikNSWG~~WG~~Gy~~i~r~~-----n~cgi~~~~~~~~~~ 2411 (2435)
|||||||||++|||+|||||.||. |+||||+.+.+++|.
T Consensus 196 YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~~~~~ 239 (239)
T cd02698 196 YWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWADPI 239 (239)
T ss_pred EEEEEcCCCcccCcCceEEEEccCCcccccccccccceEEEeeC
Confidence 999999999999999999999999 999999999998873
|
It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. |
| >PTZ00364 dipeptidyl-peptidase I precursor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=394.14 Aligned_cols=197 Identities=21% Similarity=0.321 Sum_probs=149.8
Q ss_pred CCCCCCccccCccCCCCCCCcccccCCCC---CCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhh
Q psy4869 2171 DEAIPETFDAREEWPQCKDVIGKVWDQGA---CQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDR 2247 (2435)
Q Consensus 2171 ~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~---CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~ 2247 (2435)
..+||++||||+++ +.++|+||||||. ||||| |||++++||++
T Consensus 202 ~~~LP~sfDWR~~g--g~~~VtpVrdQg~~~~CGSCW--------------------------------AFAav~alEsr 247 (548)
T PTZ00364 202 GDPPPAAWSWGDVG--GASFLPAAPPASPGRGCNSSY--------------------------------VEAALAAMMAR 247 (548)
T ss_pred ccCCCCccccCcCC--CCccCCCCcCCCCCCCCcCHH--------------------------------HHHHHHHHHHH
Confidence 35699999999932 2348999999999 99999 99999999999
Q ss_pred hhhhcCCC----cCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcc--cCCCCCcc---ccc
Q psy4869 2248 ICIQSKGQ----VKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDY--GTHDVSMG---RYI 2318 (2435)
Q Consensus 2248 ~~~~~~~~----~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y--~~~~~~~~---~~~ 2318 (2435)
++|++++. ....||+|+|+ ||+.. +.||+||++..|++|++++||++|++| ||...... +..
T Consensus 248 ~~I~tn~~~~~g~~~~LS~QqLV----DCs~~-----n~GCdGG~p~~A~~yi~~~GI~tE~dY~~PY~~~dg~~~~Ck~ 318 (548)
T PTZ00364 248 VMVASNRTDPLGQQTFLSARHVL----DCSQY-----GQGCAGGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKT 318 (548)
T ss_pred HHHHhCCCcccCcccCcCHHHHh----cccCC-----CCCCCCCcHHHHHHHHHhCCcccccccCCCCCCCCCCCCCCCC
Confidence 99988542 12349999999 88742 468999999999999999999999999 99643220 100
Q ss_pred -------------------------cCcccceeecccCCcccccce------eeEEE-----E----ecCCC-------c
Q psy4869 2319 -------------------------EGIGHAASVMGSSNPEVNNFE------KVIRL-----Y----SCEGS-------I 2351 (2435)
Q Consensus 2319 -------------------------~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~----~~~~~-------~ 2351 (2435)
.+++..+...||+.+.++.+. ++++. + .|... .
T Consensus 319 ~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~ 398 (548)
T PTZ00364 319 RRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYF 398 (548)
T ss_pred CcccceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccc
Confidence 011122233466665554442 22211 1 11100 0
Q ss_pred CcccceEEEEEEeccCCCCcceEEEEccCCC--CcCCCceEEEEeeCcccccccceeEEEe
Q psy4869 2352 NPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQ--GWGEQGLFKIRRGVNMCSIEDSVMAGEA 2410 (2435)
Q Consensus 2352 ~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~--~WG~~Gy~~i~r~~n~cgi~~~~~~~~~ 2410 (2435)
....+|||+|||||++++|++|||||||||+ +|||+|||||+||.|+||||+.++++.|
T Consensus 399 ~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~ 459 (548)
T PTZ00364 399 ASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVVVMYW 459 (548)
T ss_pred cccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCCCcccccceeeeeee
Confidence 1346899999999986688999999999999 9999999999999999999999999988
|
|
| >cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=369.93 Aligned_cols=188 Identities=41% Similarity=0.748 Sum_probs=143.9
Q ss_pred CCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCC
Q psy4869 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKG 2254 (2435)
Q Consensus 2175 P~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~ 2254 (2435)
|++||||++|++|. .|+||||||.||+|| |||++++||++++|++++
T Consensus 1 p~~~DwR~~~~~~~-~v~~v~dQg~CGsCw--------------------------------Afa~~~~le~~~~i~~~~ 47 (236)
T cd02620 1 PESFDAREKWPNCI-SIGEIRDQGNCGSCW--------------------------------AFSAVEAFSDRLCIQSNG 47 (236)
T ss_pred CCcccchhhCCCCC-CccccCCcccchhHH--------------------------------HHHHHHHHhhHHHHhcCC
Confidence 88999999886652 357999999999999 999999999999998873
Q ss_pred CcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcc------------------c
Q psy4869 2255 QVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMG------------------R 2316 (2435)
Q Consensus 2255 ~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~------------------~ 2316 (2435)
.....||+|+|+ ||... ++.||+||++..||+|++++|+++|.+|||...... +
T Consensus 48 ~~~~~LS~Q~li----dC~~~----~~~gC~GG~~~~a~~~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C 119 (236)
T cd02620 48 KENVLLSAQDLL----SCCSG----CGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKC 119 (236)
T ss_pred CCccccCHHHHH----hhcCC----CCCCCCCCCHHHHHHHHHhcCCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCC
Confidence 223349999999 88752 357899999999999999999999999999654211 0
Q ss_pred c-----------------------ccCcccceeecccCCcc------cccceeeEEEEecCCCcCcccceEEEEEEeccC
Q psy4869 2317 Y-----------------------IEGIGHAASVMGSSNPE------VNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKS 2367 (2435)
Q Consensus 2317 ~-----------------------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~ 2367 (2435)
. ...++.++...+|+.+. |..|+++++...|+ ...++|||+|||||++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPv~v~i~~~~~f~~Y~~Giy~~~~~---~~~~~HaV~iVGyg~~ 196 (236)
T cd02620 120 QDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQHTSG---KQLGGHAVKIIGWGVE 196 (236)
T ss_pred CcCCccccceeeeeecceeeeCCHHHHHHHHHHHCCCeEEEEEechhhhhcCCcEEeecCC---CCcCCeEEEEEEEecc
Confidence 0 00111122234555443 44444444322222 2235799999999976
Q ss_pred CCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeE
Q psy4869 2368 SQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMA 2407 (2435)
Q Consensus 2368 ~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~ 2407 (2435)
+|++|||||||||+.|||+|||||+||.|+|||++.+..
T Consensus 197 -~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~ 235 (236)
T cd02620 197 -NGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA 235 (236)
T ss_pred -CCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence 789999999999999999999999999999999998764
|
Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane |
| >smart00645 Pept_C1 Papain family cysteine protease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=336.83 Aligned_cols=168 Identities=35% Similarity=0.673 Sum_probs=140.3
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ .++++||||||.||+|| |||+++++|++++++++
T Consensus 1 lP~~~D~R~-----~~~~~~v~dQg~CGsCw--------------------------------Afa~~~~ie~~~~i~~~ 43 (174)
T smart00645 1 LPESFDWRK-----KGAVTPVKDQGQCGSCW--------------------------------AFSATGALEGRYCIKTG 43 (174)
T ss_pred CCCcCcccc-----cCCCCccccCcccchHH--------------------------------HHHHHHHHHHHHHHhcC
Confidence 699999999 66899999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCccccccCcccceeecccCC
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSN 2332 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 2332 (2435)
+... ||+|+|+ +|... .+.||.||++..|++|++++ |+++|.+|||.. ++....
T Consensus 44 ~~~~--lS~q~l~----~C~~~----~~~gC~GG~~~~a~~~~~~~~Gi~~e~~~PY~~-------------~~~~~~-- 98 (174)
T smart00645 44 KLVS--LSEQQLV----DCSTG----GNNGCNGGLPDNAFEYIKKNGGLETESCYPYTG-------------SVAIDA-- 98 (174)
T ss_pred Cccc--cCHHHHh----hhcCC----CCCCCCCcCHHHHHHHHHHcCCcccccccCccc-------------EEEEEc--
Confidence 7555 9999999 88753 34589999999999999998 999999999975 111111
Q ss_pred cccccceeeEEEE-ecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC-ccccccccee
Q psy4869 2333 PEVNNFEKVIRLY-SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVM 2406 (2435)
Q Consensus 2333 ~~~~~~~~~~~~~-~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~ 2406 (2435)
..|..|+++++.. .|.. ...+|+|+|||||.+++|++|||||||||+.|||+|||||.|+. |.|||+....
T Consensus 99 ~~f~~Y~~Gi~~~~~~~~---~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~~ 171 (174)
T smart00645 99 SDFQFYKSGIYDHPGCGS---GTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVA 171 (174)
T ss_pred ccccCCcCeEECCCCCCC---CcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeeee
Confidence 1377888865433 2432 22579999999997547889999999999999999999999998 9999986553
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=326.32 Aligned_cols=552 Identities=20% Similarity=0.302 Sum_probs=406.8
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC-
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG- 437 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg- 437 (2435)
+.+.+.|.|++-+.+--|.|. ...|.+|.- +......+..|...|.-+.- =|.+++++..++.+.+|+...+
T Consensus 73 ~~lp~~I~alas~~~~vy~A~---g~~i~~~~r--gk~i~~~~~~~~a~v~~l~~--fGe~lia~d~~~~l~vw~~s~~~ 145 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYVYVAS---GNKIYAYAR--GKHIRHTTLLHGAKVHLLLP--FGEHLIAVDISNILFVWKTSSIQ 145 (910)
T ss_pred CCCCCceEEEEecCceEEEec---CcEEEEEEc--cceEEEEeccccceEEEEee--ecceEEEEEccCcEEEEEecccc
Confidence 467889999987654433333 346777753 22345567778877777653 3779999999999999998774
Q ss_pred ce----EEEEeccCccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEecCC
Q psy4869 438 QR----IKKMKGHSTFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGIDN 511 (2435)
Q Consensus 438 ~~----v~~l~~h~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~dg 511 (2435)
++ +..++...+.|.++. +|.. -+.++.|+.+|.+.+|++++++.+..+. +...|+++.-+|-=..++.|..+|
T Consensus 146 ~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G 224 (910)
T KOG1539|consen 146 EELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENG 224 (910)
T ss_pred ccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCc
Confidence 22 122233333355543 3332 2457889999999999999999999984 668899999999999999999999
Q ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEE-EEECCCcEEEEEcCCCCCCCceEEEEe-CcccccccCeEEEEE
Q psy4869 512 DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYIL-SNAMDNTVRIWDIRPYVPGERCVKVMS-GHQHNFEKNLLRCAW 589 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~la-s~s~Dg~I~lWdl~~~~~~~~~v~~~~-~h~~~~~~~i~~v~~ 589 (2435)
+|.|++++.++.+..++...+.|+.++|..||+.++ +|+..|.+.+||++. .+.+.... .|. +.+....|
T Consensus 225 ~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~----kkl~~v~~nah~----~sv~~~~f 296 (910)
T KOG1539|consen 225 TVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK----KKLINVTRNAHY----GSVTGATF 296 (910)
T ss_pred eEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC----Ceeeeeeecccc----CCccccee
Confidence 999999999999999996679999999999998655 566679999999984 33333333 452 46778889
Q ss_pred cCCCCEEEEecCCCeEEEE--ECCCC--cEEEEecCCCCCeeEEEEc-CCCCEEEEEECCCcEEEecCCCccccCcceee
Q psy4869 590 SVSGLYVTAGSADKCVYIW--DTTTR--RIAYKLPGHNGSVNDVQFH-PKEPIIMSASSDKTIYLGESPLHCDKAGSILR 664 (2435)
Q Consensus 590 spdg~~Lasgs~Dg~V~iw--d~~s~--~~~~~l~~h~~~V~~l~fs-pd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 664 (2435)
-|....|++.+.|+.+++| |...| +.++.-.||..+..++.|. .++..+.+++.|++++.+++-...
T Consensus 297 l~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~-------- 368 (910)
T KOG1539|consen 297 LPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISES-------- 368 (910)
T ss_pred cCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHH--------
Confidence 9999999999999998888 44444 5677778999999999998 678899999999998877653100
Q ss_pred cCceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeec
Q psy4869 665 SGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVN 744 (2435)
Q Consensus 665 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~ 744 (2435)
+.+++-++-++
T Consensus 369 -----------------------------------------~~~~l~~~~~~---------------------------- 379 (910)
T KOG1539|consen 369 -----------------------------------------QSQELGQLHNK---------------------------- 379 (910)
T ss_pred -----------------------------------------HhHhhcccccc----------------------------
Confidence 00000000000
Q ss_pred cccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccc
Q psy4869 745 DKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLP 824 (2435)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (2435)
++.+|++.. +.+ + .++|
T Consensus 380 ----------------------------------~~~kk~~~~--------~~~--------------~-------~k~p 396 (910)
T KOG1539|consen 380 ----------------------------------KRAKKVNVF--------STE--------------K-------LKLP 396 (910)
T ss_pred ----------------------------------ccccccccc--------chh--------------h-------hcCC
Confidence 000000000 000 0 0011
Q ss_pred cccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEec
Q psy4869 825 TIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSAC 904 (2435)
Q Consensus 825 ~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~ 904 (2435)
.+ ..+. +.+.. . -.| ++...+.-.
T Consensus 397 ~i---------~~fa----~~~~R-----------------------------E------------~~W--~Nv~~~h~~ 420 (910)
T KOG1539|consen 397 PI---------VEFA----FENAR-----------------------------E------------KEW--DNVITAHKG 420 (910)
T ss_pred cc---------eeee----cccch-----------------------------h------------hhh--cceeEEecC
Confidence 00 0000 00000 0 000 011111112
Q ss_pred CCcEEEEeCCCCce-eEEEeCC------CeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc---cccccceeEEE
Q psy4869 905 ASQVKIWNRPSLSC-LRTIDTG------SYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI---PAHSQELWSVA 974 (2435)
Q Consensus 905 ~~~V~Iwd~~~~~~-~~~l~~~------~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~---~~h~~~V~sv~ 974 (2435)
....+.|+++.... ...+++. ..+.+|+.++-|++.++|...|.|.+|++++|-....+ ++|..+|.+|+
T Consensus 421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla 500 (910)
T KOG1539|consen 421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLA 500 (910)
T ss_pred cceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEE
Confidence 34667788776544 3445444 78899999999999999999999999999999998888 79999999999
Q ss_pred EecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCE
Q psy4869 975 MLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1054 (2435)
Q Consensus 975 ~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 1054 (2435)
....+ ..+++++.+|.+++|++....+ ...+....++.++.++.....
T Consensus 501 ~D~~n----------~~~vsa~~~Gilkfw~f~~k~l----------------------~~~l~l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 501 VDGTN----------RLLVSAGADGILKFWDFKKKVL----------------------KKSLRLGSSITGIVYHRVSDL 548 (910)
T ss_pred ecCCC----------ceEEEccCcceEEEEecCCcce----------------------eeeeccCCCcceeeeeehhhh
Confidence 87664 5899999999999999863221 113456788999999999999
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEcc
Q psy4869 1055 LAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP 1134 (2435)
Q Consensus 1055 Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp 1134 (2435)
++++..|-.|+++|..+.+..+.++||.+.|++++|||||++|++++.|++|++||+.++.++-.+. -..++..+.|+|
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP 627 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP 627 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999887764 456789999999
Q ss_pred CCCEEEEEeCC-CcEEEEeCCC
Q psy4869 1135 KTHYFFTTSKD-GRVKQWDADN 1155 (2435)
Q Consensus 1135 ~~~~l~s~s~D-g~V~iwD~~~ 1155 (2435)
+|.+|++...| .-|++|--..
T Consensus 628 ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCEEEEEEecCceEEEEEchh
Confidence 99999999988 6799997544
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-32 Score=326.82 Aligned_cols=500 Identities=23% Similarity=0.367 Sum_probs=377.7
Q ss_pred ceEEEEEeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCC---eEEEEEcCCeEEE
Q psy4869 25 NVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSS---QLAVAYTNGSLKT 101 (2435)
Q Consensus 25 ~v~~~~~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~---~lav~~~~G~i~i 101 (2435)
.+..+.-|.| +..+|.|....|.+||.... .-...++||...|+|+.|-|++. .+++|+.||.|.+
T Consensus 15 R~~~v~sw~~-~~~vafGa~~~Iav~dp~k~----------~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~l 83 (764)
T KOG1063|consen 15 RVPKVSSWGP-GGLVAFGAGPAIAVADPEKI----------LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVIL 83 (764)
T ss_pred cccccccccc-cceEEecCCceEEEeCcccc----------eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEE
Confidence 4445555555 45688898999999996532 23457889999999999999987 7999999999999
Q ss_pred EECCCC--CeEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCCEEEEEccCCe----------------------------
Q psy4869 102 FSLDTT--DVISTFTGHKSAITVIQYDPLGHRLATG-SKDTDIVLWDVVAEC---------------------------- 150 (2435)
Q Consensus 102 ~d~~~~--~~~~~l~gH~~~V~~l~f~p~g~~laSg-s~Dg~I~iWd~~~~~---------------------------- 150 (2435)
|.++.. ..+.++.||...+.|+.=. ..+.++ ..|+.+.+||.+...
T Consensus 84 W~l~~~~~~~i~~~~g~~~~~~cv~a~---~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~ 160 (764)
T KOG1063|consen 84 WKLRDEYLIKIYTIQGHCKECVCVVAR---SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTF 160 (764)
T ss_pred EEEeehheEEEEeecCcceeEEEEEee---eeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcE
Confidence 999844 3566888888766665432 223333 678888888872221
Q ss_pred ----------------------eEEEEecCCCcEEEEEEeecCC-CcEEEEEeCCCcEEEEeccCCc-------------
Q psy4869 151 ----------------------GLHRLSGHKGVITDIRFMSQPG-HHFVVSSAKDTFVKIWDADTGD------------- 194 (2435)
Q Consensus 151 ----------------------~~~~l~gH~~~V~~v~~~~~~~-~~~l~S~s~Dg~I~iWd~~tg~------------- 194 (2435)
.+..+.||.+.|.+|+|..... ..+|+|+|.|..||||.+.-+.
T Consensus 161 lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~ 240 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT 240 (764)
T ss_pred EEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc
Confidence 2334689999999999975544 6799999999999999864333
Q ss_pred --------cc----------cccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecc
Q psy4869 195 --------CF----------KTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLS 256 (2435)
Q Consensus 195 --------~~----------~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 256 (2435)
.+ .-+.||.+.|+++.|+|.+..|+++|.|+++.+|......
T Consensus 241 ~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~t-------------------- 300 (764)
T KOG1063|consen 241 LSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENT-------------------- 300 (764)
T ss_pred ccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCcc--------------------
Confidence 11 1125999999999999999999999999999999766321
Q ss_pred cCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccce
Q psy4869 257 EDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNY 336 (2435)
Q Consensus 257 ~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~ 336 (2435)
..|....|+..
T Consensus 301 --------------------------GiWv~~vRlGe------------------------------------------- 311 (764)
T KOG1063|consen 301 --------------------------GIWVDVVRLGE------------------------------------------- 311 (764)
T ss_pred --------------------------ceEEEEEEeec-------------------------------------------
Confidence 01221111100
Q ss_pred eeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC--ceeeEEEeeCCCCCeeEEEEc
Q psy4869 337 KVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG--ECENIGVMSGHTGAVMDLKFS 414 (2435)
Q Consensus 337 ~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~--~~~~~~~l~~h~~~V~~l~~s 414 (2435)
..|..+.-..+-|+|+++.+++-+..|-.++|...+ .........||.+.|++++|+
T Consensus 312 ---------------------~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ 370 (764)
T KOG1063|consen 312 ---------------------VGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD 370 (764)
T ss_pred ---------------------ccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec
Confidence 012334456778999999999999999999998322 233445668999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCC----ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC-----------
Q psy4869 415 TDGCHIFTCSTDQTLAVWDLEKG----QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK----------- 479 (2435)
Q Consensus 415 ~dg~~L~s~s~Dg~I~vwd~~tg----~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~----------- 479 (2435)
|.|++|++++.|.+-|+|-.-.. ..+..-+-|...+.++++.+. +..|++|.+...+|+|+...
T Consensus 371 psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g 449 (764)
T KOG1063|consen 371 PSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICG 449 (764)
T ss_pred CCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhC
Confidence 99999999999999999975411 123333567778889988875 57899999999999997421
Q ss_pred --------------------------------Ccc----------------------------------eEeecCcccEE
Q psy4869 480 --------------------------------KNQ----------------------------------AVSMNNTYQVT 493 (2435)
Q Consensus 480 --------------------------------~~~----------------------------------~~~~~~~~~v~ 493 (2435)
+.. .+.+.|...|.
T Consensus 450 ~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~ 529 (764)
T KOG1063|consen 450 KCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVY 529 (764)
T ss_pred ccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEE
Confidence 000 00012456799
Q ss_pred EEEECCCCCEEEEEecC-----CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCc
Q psy4869 494 SVAFNDTAECVLTGGID-----NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGER 568 (2435)
Q Consensus 494 sv~~sp~g~~l~sgs~d-----g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~ 568 (2435)
+++.+|+|+++|+++.. ..|+||+..++..+..+.+|.-.|+.|+|+|||++|++.|.|+++.+|..........
T Consensus 530 ~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~ 609 (764)
T KOG1063|consen 530 ALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF 609 (764)
T ss_pred EEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh
Confidence 99999999999998754 4589999999999999999999999999999999999999999999999864322222
Q ss_pred eEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC--cEEE--EecCCCCCeeEEEEcCC-----CCEEE
Q psy4869 569 CVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR--RIAY--KLPGHNGSVNDVQFHPK-----EPIIM 639 (2435)
Q Consensus 569 ~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~--~~~~--~l~~h~~~V~~l~fspd-----~~~La 639 (2435)
.....+.|. .-|..|.|+|++.+++++|.|.+|+||..... +.+. ....+...|++++|.|- +..++
T Consensus 610 ~fa~~k~Ht----RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~va 685 (764)
T KOG1063|consen 610 RFACLKAHT----RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVA 685 (764)
T ss_pred hhccccccc----eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEE
Confidence 222234443 46789999999999999999999999998876 3332 23458899999999872 23788
Q ss_pred EEECCCcEEEecCC
Q psy4869 640 SASSDKTIYLGESP 653 (2435)
Q Consensus 640 sgs~Dg~I~vWd~~ 653 (2435)
.|-..|.|.+|..+
T Consensus 686 vGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 686 VGLEKGEIVLWRRK 699 (764)
T ss_pred EEecccEEEEEecc
Confidence 88899999999966
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=306.14 Aligned_cols=294 Identities=21% Similarity=0.265 Sum_probs=268.6
Q ss_pred EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q psy4869 1074 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1153 (2435)
Q Consensus 1074 ~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~ 1153 (2435)
..+.++||.+.|.++.|++|.++|++++.||.+.|||.-+...++-+......|..++|+|.++++++|+-|+...+|++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 34789999999999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred CCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEee-CCCEEEEE
Q psy4869 1154 DNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTT 1232 (2435)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp-d~~~lvsg 1232 (2435)
.+.+.....+..+.+.+|.+.+.|+.|-+ ..+|++++.|.+..+||+++++.+..|.+|.+.|.++.+.| +++.+++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 86644333444456789999999999987 56899999999999999999999999999999999999999 99999999
Q ss_pred ECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccc
Q psy4869 1233 SKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK 1312 (2435)
Q Consensus 1233 s~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1312 (2435)
+.|+..++||+|.+..+.++..
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~g---------------------------------------------------------- 227 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEG---------------------------------------------------------- 227 (343)
T ss_pred ccccceeeeeccCcceeEeecc----------------------------------------------------------
Confidence 9999999999999877766543
Q ss_pred ccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q psy4869 1313 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG--HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1313 ~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~--h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~ 1390 (2435)
++..|+.++|.|+|.-||+|+.|+..++||+...+.+..|.. -..+|++++||..|++|.+|..|..+.+||.-.++.
T Consensus 228 hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 228 HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER 307 (343)
T ss_pred cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccce
Confidence 245688999999999999999999999999999887777773 346899999999999999999999999999999999
Q ss_pred EEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1391 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1391 ~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
+..+.+|...|.+|..+|||..++||++|..|+||.
T Consensus 308 vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 308 VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999994
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=320.95 Aligned_cols=461 Identities=17% Similarity=0.208 Sum_probs=338.6
Q ss_pred CCCceEEEEEeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEE
Q psy4869 22 PNCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKT 101 (2435)
Q Consensus 22 ~~~~v~~~~~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i 101 (2435)
|...|-++.+++.+.-.|++-++|.|-|||.++..++..... . ...|-+..+-+.-+++++|+.|+.|++
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-----~-----~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-----S-----EVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-----c-----ccchhhheeeeccceEEEecCCceEEE
Confidence 778999999988877777777999999999998765542211 1 111224445567789999999999999
Q ss_pred EECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC-eeEEEEecCCCcEEEEEEeecCCCcEEEEEe
Q psy4869 102 FSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE-CGLHRLSGHKGVITDIRFMSQPGHHFVVSSA 180 (2435)
Q Consensus 102 ~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~-~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s 180 (2435)
|++++++.++.|..|.+.|.|++.+|+..+++|+|+|.+|++||.... .+.+++.||..-|.+|+|+|.+. +.++|++
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-ntFaS~s 160 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-NTFASAS 160 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc-cceeeee
Confidence 999999999999999999999999999999999999999999999874 47789999999999999998654 5689999
Q ss_pred CCCcEEEEeccCCccccccccccceEEEEEEEeCC--CeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccC
Q psy4869 181 KDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRED--SYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSED 258 (2435)
Q Consensus 181 ~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~--~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (2435)
-|++||||.+.+..+..++.+|...|+++++-+.| .+|++|++|.+++|||..++.++
T Consensus 161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV-------------------- 220 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV-------------------- 220 (794)
T ss_pred ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH--------------------
Confidence 99999999999999999999999999999998754 58999999999999998754321
Q ss_pred CCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceee
Q psy4869 259 EPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKV 338 (2435)
Q Consensus 259 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~ 338 (2435)
T Consensus 221 -------------------------------------------------------------------------------- 220 (794)
T KOG0276|consen 221 -------------------------------------------------------------------------------- 220 (794)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCC
Q psy4869 339 QKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGC 418 (2435)
Q Consensus 339 ~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~ 418 (2435)
.++.||...|.++.|+|.-.+|++|+.||++|||+..+- +....+.-.-+.|++|+-.+.+.
T Consensus 221 -----------------~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~gleRvW~I~~~k~~~ 282 (794)
T KOG0276|consen 221 -----------------QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNYGLERVWCIAAHKGDG 282 (794)
T ss_pred -----------------HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhcCCceEEEEeecCCCC
Confidence 246799999999999999999999999999999986542 23344555568999999998888
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCe---EEEEEeCCCeEEEEeCCCCcceEee-----cCcc
Q psy4869 419 HIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQL---LIASGSDDCTVKVWDPRKKNQAVSM-----NNTY 490 (2435)
Q Consensus 419 ~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~---llasgs~Dg~I~vwD~~~~~~~~~~-----~~~~ 490 (2435)
.++.|.+.|.|. ..+-.+++...+......+ |...+.- .+-+.+.++ ++..++.+... ...-
T Consensus 283 ~i~vG~Deg~i~-v~lgreeP~vsMd~~gKIi----wa~~~ei~~~~~ks~~~~~-----ev~DgErL~LsvKeLgs~ei 352 (794)
T KOG0276|consen 283 KIAVGFDEGSVT-VKLGREEPAVSMDSNGKII----WAVHSEIQAVNLKSVGAQK-----EVTDGERLPLSVKELGSVEI 352 (794)
T ss_pred eEEEeccCCcEE-EEccCCCCceeecCCccEE----EEcCceeeeeeceeccCcc-----cccCCccccchhhhcccccc
Confidence 888887776654 3444455554444322222 2111100 011111111 22333322211 1222
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceE
Q psy4869 491 QVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCV 570 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v 570 (2435)
....++.+|+|+++++++ ||.-.||-.--.+ ..+-+.-....|++|.+.++.-..++.|+++ +++ +..
T Consensus 353 yPq~L~hsPNGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knf----ke~ 420 (794)
T KOG0276|consen 353 YPQTLAHSPNGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNF----KEH 420 (794)
T ss_pred chHHhccCCCCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecc----eec
Confidence 345678899999887765 6777777532111 1234555678899999999998889999998 432 222
Q ss_pred EEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 571 KVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 571 ~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
+.++... . +.. --|..|+....++.+++||-.+++++..+.-. .-.+.|+.+|.+++.++.|.
T Consensus 421 ksi~~~~------~--~e~-i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 421 KSIRPDM------S--AEG-IFGGPLLGVRSSDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred ccccccc------c--eee-ecCCceEEEEeCCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc
Confidence 2222111 0 111 12445555566778999999999999988533 34678999999998888776
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=323.33 Aligned_cols=335 Identities=24% Similarity=0.395 Sum_probs=287.4
Q ss_pred eecCCCccceEEEeecCCCC-eEEEEEcCCeEEEEECCCC----CeEEEe------cCC----CCCEEEEEEcCCCCEEE
Q psy4869 69 LLLPGEKHEVCQLSPNHDSS-QLAVAYTNGSLKTFSLDTT----DVISTF------TGH----KSAITVIQYDPLGHRLA 133 (2435)
Q Consensus 69 ~~~~g~~~~v~~~~~~~d~~-~lav~~~~G~i~i~d~~~~----~~~~~l------~gH----~~~V~~l~f~p~g~~la 133 (2435)
..+. |.++|...+|+|-.. .+|++..+-..++|++... ..+..| .|+ ...|++|+|+.+|..||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3444 899999999999876 8999999999999999751 111111 122 26899999999999999
Q ss_pred EEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEe
Q psy4869 134 TGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMR 213 (2435)
Q Consensus 134 Sgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p 213 (2435)
+|+.||.+|||+. .+..+.+|..|+++|.+|+|+ ..+.+|++++.|+++.+||..+|...+.+..|..+--.|.|.
T Consensus 252 tG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWn--k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~- 327 (524)
T KOG0273|consen 252 TGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWN--KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ- 327 (524)
T ss_pred EeecCcEEEEEec-CchhhhhhhccCCceEEEEEc--CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-
Confidence 9999999999995 566688899999999999996 567899999999999999999999999999998886677776
Q ss_pred CCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEee
Q psy4869 214 EDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLAL 293 (2435)
Q Consensus 214 ~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 293 (2435)
+...|++.+.|+.|+|+.+...
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~---------------------------------------------------------- 349 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGED---------------------------------------------------------- 349 (524)
T ss_pred cCceEeecCCCceEEEEEecCC----------------------------------------------------------
Confidence 4567899999999999866421
Q ss_pred eecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCC
Q psy4869 294 CISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPD 373 (2435)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspd 373 (2435)
.|+..+.||.++|.+++|+|.
T Consensus 350 -----------------------------------------------------------~P~~t~~GH~g~V~alk~n~t 370 (524)
T KOG0273|consen 350 -----------------------------------------------------------RPVKTFIGHHGEVNALKWNPT 370 (524)
T ss_pred -----------------------------------------------------------CcceeeecccCceEEEEECCC
Confidence 245567899999999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCcccccc
Q psy4869 374 GQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSC 453 (2435)
Q Consensus 374 g~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv 453 (2435)
|.+|++++.|++++||..... .....+.+|+..|+.+.|+|+|. +
T Consensus 371 g~LLaS~SdD~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~----------------------------------v 415 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGP----------------------------------V 415 (524)
T ss_pred CceEEEecCCCeeEeeecCCC-cchhhhhhhccceeeEeecCCCC----------------------------------c
Confidence 999999999999999997543 24567889999999999999752 2
Q ss_pred CcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCC
Q psy4869 454 DPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532 (2435)
Q Consensus 454 ~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~ 532 (2435)
.+.|..+..+++++.|++|++||+..+.++..+ .|..+|++++|+|+|+++|+|+.||.|.+|+.++++.++.+.+ .+
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~ 494 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TG 494 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CC
Confidence 234555567889999999999999999999988 7999999999999999999999999999999999999999886 45
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 533 ~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
.|..++|+-+|.+|..+-.|+.+++.|+|
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 69999999999999999999999999987
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=295.75 Aligned_cols=295 Identities=20% Similarity=0.412 Sum_probs=254.6
Q ss_pred CCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcc
Q psy4869 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLN 251 (2435)
Q Consensus 172 ~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~ 251 (2435)
..-+|+|+|.|.+||+|...+|.|.+++....+.|+.+.+.|+++.|++++. .+||+||+++++
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n--------------- 72 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN--------------- 72 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC---------------
Confidence 4468999999999999999999999999888899999999999999988775 689999988531
Q ss_pred eeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEe
Q psy4869 252 QLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYD 331 (2435)
Q Consensus 252 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d 331 (2435)
T Consensus 73 -------------------------------------------------------------------------------- 72 (311)
T KOG0315|consen 73 -------------------------------------------------------------------------------- 72 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEE
Q psy4869 332 REKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDL 411 (2435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l 411 (2435)
..|++.+.+|.+.|+++.|..+|+++++|+.||+++|||++.. .......|..+|+++
T Consensus 73 --------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--~~qR~~~~~spVn~v 130 (311)
T KOG0315|consen 73 --------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQRNYQHNSPVNTV 130 (311)
T ss_pred --------------------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc--ccchhccCCCCcceE
Confidence 1366788999999999999999999999999999999999873 333455688999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCccc
Q psy4869 412 KFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQ 491 (2435)
Q Consensus 412 ~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~ 491 (2435)
..+|+...|++|..+|.|++||+....+.+.+ .|.. ...
T Consensus 131 vlhpnQteLis~dqsg~irvWDl~~~~c~~~l------------iPe~-----------------------------~~~ 169 (311)
T KOG0315|consen 131 VLHPNQTELISGDQSGNIRVWDLGENSCTHEL------------IPED-----------------------------DTS 169 (311)
T ss_pred EecCCcceEEeecCCCcEEEEEccCCcccccc------------CCCC-----------------------------Ccc
Confidence 99999889999999999999998765433222 1221 135
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEECCCC------cEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCC
Q psy4869 492 VTSVAFNDTAECVLTGGIDNDIKMWDLRTN------SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP 565 (2435)
Q Consensus 492 v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~------~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~ 565 (2435)
|.++...|||.+++.+...|..++|++-++ +++.+++.|.+.+..+.+|||+++||++|.|.+++||+.+.+
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-- 247 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-- 247 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--
Confidence 788999999999999999999999998764 456778999999999999999999999999999999999853
Q ss_pred CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEc
Q psy4869 566 GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632 (2435)
Q Consensus 566 ~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fs 632 (2435)
.+....+.+|+ ..+..|+||.||+||++|+.|+.+++||+..++.+..+.||.....|++.+
T Consensus 248 -~kle~~l~gh~----rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 -FKLELVLTGHQ----RWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred -eeeEEEeecCC----ceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 35556677775 589999999999999999999999999999999999999999988887764
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=305.17 Aligned_cols=531 Identities=18% Similarity=0.202 Sum_probs=401.4
Q ss_pred eeEEeEEEecCceEEEEEEecCCcccccccccC-CCcccccceeeeeecCCCCceEEEEecCCCcEEEEecC--------
Q psy4869 835 IKSVDVILGGGGEIRLALLLNNNSLELHSLSLG-GSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACA-------- 905 (2435)
Q Consensus 835 ~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~-g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~-------- 905 (2435)
-..|++++||+|.-.+.-++-....+.+|+.+. +......+-...+..||++.|.|+++.||.-.+|+|+.
T Consensus 53 kl~LewvygYRG~dcR~Nly~lptgE~vyfvA~V~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~ 132 (626)
T KOG2106|consen 53 KLKLEWVYGYRGVDCRNNLYLLPTGELVYFVAAVGVLYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPL 132 (626)
T ss_pred CceeEEEEeecceeeeceeEEccCccEEEEeccEEEEEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcC
Confidence 356899999999887776655555666665433 22233344444577899999999999999999998875
Q ss_pred -CcEEEEeCCCCceeEEEe-CCCeEEEEEEec--CCCEEEEEe--CCCeEEEEEccCCceeecccccccceeEEEEecCC
Q psy4869 906 -SQVKIWNRPSLSCLRTID-TGSYALSVCFVP--GDRHVLVGT--KDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQ 979 (2435)
Q Consensus 906 -~~V~Iwd~~~~~~~~~l~-~~~~v~~vafsp--dg~~Lavg~--~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~ 979 (2435)
..|+|||..+++-+..+- ....+.||+|++ .|.+|++-. .+..+.|||++.+......+..++.|....|+|.+
T Consensus 133 ~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd 212 (626)
T KOG2106|consen 133 QPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTD 212 (626)
T ss_pred CCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCC
Confidence 369999988888887776 556778999998 456666543 46789999999999998888889999999999976
Q ss_pred CCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEE
Q psy4869 980 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL 1059 (2435)
Q Consensus 980 ~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~ 1059 (2435)
.+.+++++. |++.+|+++.+.+.+..+-.. ...+.-|.|++|.++|. +++|+
T Consensus 213 ---------~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fe-----------------k~ekk~Vl~v~F~engd-viTgD 264 (626)
T KOG2106|consen 213 ---------PNLIITCGK-GHLYFWTLRGGSLVKRQGIFE-----------------KREKKFVLCVTFLENGD-VITGD 264 (626)
T ss_pred ---------CcEEEEeCC-ceEEEEEccCCceEEEeeccc-----------------cccceEEEEEEEcCCCC-EEeec
Confidence 357777666 999999987666543311110 11125689999999998 56898
Q ss_pred CCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEE--EeccCCCEEEEEEccCCC
Q psy4869 1060 LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS--LLAHEDSVTGVTFVPKTH 1137 (2435)
Q Consensus 1060 ~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~--l~~h~~~V~~v~fsp~~~ 1137 (2435)
.+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|+.|..|..||-+.. .++. +....+.|..|+-...+
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~-k~r~~elPe~~G~iRtv~e~~~d- 341 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYR-KLRETELPEQFGPIRTVAEGKGD- 341 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEecccccc-ccccccCchhcCCeeEEecCCCc-
Confidence 89999999999988888888999999999999998755 5999999999994332 3332 33455677777654322
Q ss_pred EEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCE
Q psy4869 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1217 (2435)
Q Consensus 1138 ~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V 1217 (2435)
|+.|...+.|..=.+++.-.+.. .+|....+.++.+|+..++++++.|+.+++|+ ..+++... .-..++
T Consensus 342 -i~vGTtrN~iL~Gt~~~~f~~~v-------~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~ 410 (626)
T KOG2106|consen 342 -ILVGTTRNFILQGTLENGFTLTV-------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPA 410 (626)
T ss_pred -EEEeeccceEEEeeecCCceEEE-------EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCce
Confidence 77787777777777766544333 47888999999999999999999999999999 33433333 456789
Q ss_pred EEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEe----eCCcccccCceEEEEEECCCeEEEEEcccccccccccccc
Q psy4869 1218 TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH----FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEET 1293 (2435)
Q Consensus 1218 ~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~----~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~ 1293 (2435)
.|+.|+|.+ .++.|...|...+.|..+...+..-. +....|.|++..+++|+.|+.|++|.+.....
T Consensus 411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-------- 481 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-------- 481 (626)
T ss_pred eEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc--------
Confidence 999999999 89999999999999998844433222 22235678999999999999999998763221
Q ss_pred cccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEE--------------ec----CC
Q psy4869 1294 KDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS--------------LY----GH 1355 (2435)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~--------------~~----~h 1355 (2435)
.+... .. -....|..+.||+|+++|..-+.|-.|-.|.....+.+.. |. .+
T Consensus 482 --------~y~r~--~k-~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 482 --------KYSRV--GK-CSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred --------EEEEe--ee-ecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 11111 11 1227899999999999999999999999995433221111 11 22
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce---EEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEEC
Q psy4869 1356 KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC---HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1427 (2435)
Q Consensus 1356 ~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~---~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~ 1427 (2435)
...+..++-+.+.+++++|.+.|.|++|....-+. .....+|.+-|++|+|.-+..+|.+.|.|..|..|++
T Consensus 551 ~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 551 GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 23355566667789999999999999999876443 3356789999999999999999999999999999986
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=306.74 Aligned_cols=335 Identities=19% Similarity=0.316 Sum_probs=297.3
Q ss_pred CCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEE
Q psy4869 107 TDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186 (2435)
Q Consensus 107 ~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~ 186 (2435)
...+.+|..|++.|.+++.+|+.+++|||+.|-...||++.++.....+.||+..|+++.|+ .++.+|++|..+|.|+
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HDGTLLATGDMSGKVL 131 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc--cCceEEEecCCCccEE
Confidence 45788999999999999999999999999999999999999999999999999999999997 6678999999999999
Q ss_pred EEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeee
Q psy4869 187 IWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSK 266 (2435)
Q Consensus 187 iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 266 (2435)
||+..+|.....+......+-=++|+|.+..|+.|+.||.+-+|.+..+.
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~------------------------------ 181 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA------------------------------ 181 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc------------------------------
Confidence 99999999988887667777789999999999999999999999876320
Q ss_pred EEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeeccccc
Q psy4869 267 IEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVG 346 (2435)
Q Consensus 267 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 346 (2435)
T Consensus 182 -------------------------------------------------------------------------------- 181 (399)
T KOG0296|consen 182 -------------------------------------------------------------------------------- 181 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC
Q psy4869 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD 426 (2435)
Q Consensus 347 ~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 426 (2435)
...++.||+.+++|-.|.|+|+++++|..||+|++||..........-........++.++.++..++.|..+
T Consensus 182 -------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 182 -------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred -------eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 0124679999999999999999999999999999999987643332222334567788888899999999999
Q ss_pred CeEEEEECCCCceEEEEe--------ccCccccccCcccCCC--eEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEE
Q psy4869 427 QTLAVWDLEKGQRIKKMK--------GHSTFVNSCDPVRRGQ--LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVA 496 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~--------~h~~~v~sv~~~~~~~--~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~ 496 (2435)
+.+++-+..+|+.+.... .+...+.++.+.|... .++|+|+-||+|.|||+..........|...|..+.
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~ 334 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK 334 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEE
Confidence 999999999999887776 4566677777766543 367899999999999999999999999999999999
Q ss_pred ECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 497 FNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 497 ~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
|-+ ..+|++++.+|.|++||.|+|+++..+.||...|.+++++|++++++++|.|++.+||++.
T Consensus 335 w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999 7899999999999999999999999999999999999999999999999999999999863
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=294.54 Aligned_cols=294 Identities=22% Similarity=0.430 Sum_probs=252.4
Q ss_pred CcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCC--eEEE
Q psy4869 36 GRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTD--VIST 112 (2435)
Q Consensus 36 g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~--~~~~ 112 (2435)
.-+||++ +|..||+|...++..... ++-....|+++...||++.||+| ++..|++||+++++ |+.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT----------iqh~dsqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t 78 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT----------IQHPDSQVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNPNPVAT 78 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE----------EecCccceeeEEEcCCcchhhhc-cCCeeEEEEccCCCCCceeE
Confidence 3578875 999999999988765542 23345568899999999999988 68899999999764 7999
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccC
Q psy4869 113 FTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADT 192 (2435)
Q Consensus 113 l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~t 192 (2435)
|.||+..|+++.|..+|+.++|||+||++||||++.... .+...|..+|++|..+|+. .-|++|..+|.|++||+.+
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~-qR~~~~~spVn~vvlhpnQ--teLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC-QRNYQHNSPVNTVVLHPNQ--TELISGDQSGNIRVWDLGE 155 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-chhccCCCCcceEEecCCc--ceEEeecCCCcEEEEEccC
Confidence 999999999999999999999999999999999998554 4445778999999998653 3589999999999999999
Q ss_pred Cccccccc-cccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEe
Q psy4869 193 GDCFKTMA-AHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQI 271 (2435)
Q Consensus 193 g~~~~~~~-~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 271 (2435)
..+.+.+. .....|..+...|+|++++.+...|.+++|++-....
T Consensus 156 ~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~---------------------------------- 201 (311)
T KOG0315|consen 156 NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT---------------------------------- 201 (311)
T ss_pred CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc----------------------------------
Confidence 98877763 3446899999999999999999999999999763110
Q ss_pred ecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCcccc
Q psy4869 272 INELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNL 351 (2435)
Q Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~ 351 (2435)
...
T Consensus 202 -----------------------------------------------------------------------------~s~ 204 (311)
T KOG0315|consen 202 -----------------------------------------------------------------------------ASE 204 (311)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 011
Q ss_pred ccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q psy4869 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431 (2435)
Q Consensus 352 ~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~v 431 (2435)
+.|+..++.|++.|..+.++||++|||+++.|.+++||+..+..+....+.+|...+++.+||.||++|++++.|+.+++
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceee
Confidence 24556688999999999999999999999999999999998876667788999999999999999999999999999999
Q ss_pred EECCCCceEEEEeccCccccccC
Q psy4869 432 WDLEKGQRIKKMKGHSTFVNSCD 454 (2435)
Q Consensus 432 wd~~tg~~v~~l~~h~~~v~sv~ 454 (2435)
||+..++.++.+.+|.....+++
T Consensus 285 W~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 285 WDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred cccccCceeeecCCcccccEEEE
Confidence 99999999999999987665554
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=315.72 Aligned_cols=346 Identities=23% Similarity=0.335 Sum_probs=292.2
Q ss_pred eeeeeCCCCceEEEEEeCCCCc-EEEEe-cCCcEEEEEcCccc----cccccCCccccceecCCCccceEEEeecCCCCe
Q psy4869 16 FNIIASPNCNVVFVTLKNQEGR-FLATG-ASEDVIIWDLRLAE----KALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQ 89 (2435)
Q Consensus 16 ~~~~~~~~~~v~~~~~~~~~g~-~lasg-~~g~V~IwD~~~~~----~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~ 89 (2435)
+-.+.+|.+.|+.. -|+|... +||+| .+-.-|||++.... .+..+.....+.....-....|++++|+++|..
T Consensus 171 ~~kvl~~~~~V~~~-~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 171 KAKVLRHESEVFIC-AWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ceeeccCCCceEEE-ecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 33556788888877 5788666 78888 56678999987521 111111111111222224467999999999999
Q ss_pred EEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEee
Q psy4869 90 LAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS 169 (2435)
Q Consensus 90 lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~ 169 (2435)
||+|..||.++||+.+.. .+.+|..|+++|.+|+|+..|++|++|+.|+++.|||.-++...+.+..|..+-.+|.|-
T Consensus 250 LatG~~~G~~riw~~~G~-l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~- 327 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDGN-LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ- 327 (524)
T ss_pred EEEeecCcEEEEEecCch-hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-
Confidence 999999999999998744 677888999999999999999999999999999999999999999999999998999995
Q ss_pred cCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhh
Q psy4869 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQ 249 (2435)
Q Consensus 170 ~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~ 249 (2435)
+..-|++++.|+.|+|+.+....++.++.+|.++|.++.|.|.+.+|+++|+|+++++|+.......
T Consensus 328 --~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~----------- 394 (524)
T KOG0273|consen 328 --SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV----------- 394 (524)
T ss_pred --cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch-----------
Confidence 2345899999999999999999999999999999999999999999999999999999986532100
Q ss_pred cceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEE
Q psy4869 250 LNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTV 329 (2435)
Q Consensus 250 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i 329 (2435)
T Consensus 395 -------------------------------------------------------------------------------- 394 (524)
T KOG0273|consen 395 -------------------------------------------------------------------------------- 394 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCee
Q psy4869 330 YDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVM 409 (2435)
Q Consensus 330 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~ 409 (2435)
.-+++|...|+.+.|+|.|..
T Consensus 395 --------------------------~~l~~Hskei~t~~wsp~g~v--------------------------------- 415 (524)
T KOG0273|consen 395 --------------------------HDLQAHSKEIYTIKWSPTGPV--------------------------------- 415 (524)
T ss_pred --------------------------hhhhhhccceeeEeecCCCCc---------------------------------
Confidence 125689999999999997631
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecC
Q psy4869 410 DLKFST-DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN 488 (2435)
Q Consensus 410 ~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~ 488 (2435)
.++| ++..|++++.|++|++||+..|.+++.+..|..+|.+++|+|++ .++++|+.||.|.+|+.+.++....+..
T Consensus 416 --~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 416 --TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred --cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchheeEeecC
Confidence 0112 46679999999999999999999999999999999999999998 6789999999999999999999999999
Q ss_pred cccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 489 TYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 489 ~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
...|..++|+-+|++|..+-.||.+++.|++
T Consensus 493 ~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 493 TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999999999999986
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=296.49 Aligned_cols=292 Identities=25% Similarity=0.440 Sum_probs=256.4
Q ss_pred eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEec-----cCCccccccccccceEEEEEEEeCCCeEEEeeCC
Q psy4869 150 CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDA-----DTGDCFKTMAAHLTEVWGVCVMREDSYLISGSND 224 (2435)
Q Consensus 150 ~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~-----~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~D 224 (2435)
....++.+|.+.|+.++-.+. +...++++++|.++.+|++ +.|..++.+.||...|..+..+++|++.++++.|
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred eeeeeecCCCceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 345678999999999999765 6778999999999999986 4566788999999999999999999999999999
Q ss_pred CcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCc
Q psy4869 225 AELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDD 304 (2435)
Q Consensus 225 g~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (2435)
+++|+||+.+++
T Consensus 85 ~~lrlWDl~~g~-------------------------------------------------------------------- 96 (315)
T KOG0279|consen 85 GTLRLWDLATGE-------------------------------------------------------------------- 96 (315)
T ss_pred ceEEEEEecCCc--------------------------------------------------------------------
Confidence 999999988542
Q ss_pred cccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCC
Q psy4869 305 FAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDR 384 (2435)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg 384 (2435)
+...|.||...|.+++|++|...|++|+.|.
T Consensus 97 -------------------------------------------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 97 -------------------------------------------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred -------------------------------------------------EEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence 1124679999999999999999999999999
Q ss_pred eEEEEecCCceeeEEEeeCCCCCeeEEEEccC--CCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeE
Q psy4869 385 QIFIWSVYGECENIGVMSGHTGAVMDLKFSTD--GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLL 462 (2435)
Q Consensus 385 ~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~d--g~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~l 462 (2435)
+|++|++.+.++....-..|.+.|.++.|+|+ ...|++++.|++|++||+++-+....+.+|...++.+.++|+| .+
T Consensus 128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG-sl 206 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG-SL 206 (315)
T ss_pred eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC-CE
Confidence 99999998877655444556899999999997 6789999999999999999999999999999999999999998 67
Q ss_pred EEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEec----C-----CCC
Q psy4869 463 IASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG----H-----SDT 533 (2435)
Q Consensus 463 lasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~----h-----~~~ 533 (2435)
+++|+.||.+.+||++.++.+..+.+...|.+++|+|+.-.|+.+ .+..|+|||++++..+..++. . ...
T Consensus 207 casGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred EecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcE
Confidence 889999999999999999999999999999999999986555544 455699999999988876632 2 223
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 534 VTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 534 V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
..+++|++||..|.+|-.|+.|++|.+.
T Consensus 286 clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 5678999999999999999999999986
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-30 Score=304.69 Aligned_cols=282 Identities=22% Similarity=0.393 Sum_probs=255.1
Q ss_pred ecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC
Q psy4869 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG 437 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg 437 (2435)
+..|...|.++.|||...+++++-..|.|.|||..+. ..+..+.-..-+|+...|-...+++++|++|..|+||+..++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 4458899999999999999999999999999998764 345566677889999999998899999999999999999999
Q ss_pred ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc-ceEee-cCcccEEEEEECC-CCCEEEEEecCCeEE
Q psy4869 438 QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN-QAVSM-NNTYQVTSVAFND-TAECVLTGGIDNDIK 514 (2435)
Q Consensus 438 ~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~-~~~~~-~~~~~v~sv~~sp-~g~~l~sgs~dg~V~ 514 (2435)
+.++.+..|.+.|.+++.+|..+. ++++|+|.+|++||....- +...+ .|.+.|.+++|+| |.+.+|+++-|++|+
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 999999999999999999999865 5689999999999998654 34444 6888999999999 567899999999999
Q ss_pred EEECCCCcEEEEEecCCCCEEEEEEcCCC--CEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCC
Q psy4869 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDG--SYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592 (2435)
Q Consensus 515 lwD~~s~~~v~~l~~h~~~V~~i~~spdg--~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spd 592 (2435)
+|.+.+..+..++++|...|+||+|-+.| .+|++|+.|.+|+|||.. ...|++++.||.+ .|..+.|+|.
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ----tk~CV~TLeGHt~----Nvs~v~fhp~ 238 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ----TKSCVQTLEGHTN----NVSFVFFHPE 238 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc----hHHHHHHhhcccc----cceEEEecCC
Confidence 99999999999999999999999999854 699999999999999998 5789999999986 5788999999
Q ss_pred CCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEE
Q psy4869 593 GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649 (2435)
Q Consensus 593 g~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~v 649 (2435)
-.++++||.||+++||+..+.++...+.-....|+|++-++....++.|.+.|.|.+
T Consensus 239 lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 239 LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999999999988888778889999999999999999999888765
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=319.57 Aligned_cols=461 Identities=18% Similarity=0.316 Sum_probs=325.3
Q ss_pred CccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEE
Q psy4869 74 EKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLH 153 (2435)
Q Consensus 74 ~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~ 153 (2435)
....+..++|.|...++.++...|.|++||.+.+..+..|.+|.++|..++|+|++.+++||++|..|+||+....+++.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcC
Q psy4869 154 RLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVR 233 (2435)
Q Consensus 154 ~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~ 233 (2435)
+|.||-+-|..+.||+ .--.++|+|.|.+|+||++.+++|+..+.||..-|+|..|+|....++++|-|.+|||||+.
T Consensus 88 tL~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 88 TLLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred hhccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence 9999999999999984 34589999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhh
Q psy4869 234 DRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQ 313 (2435)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (2435)
.-+..+.. .. .++.+. .....+
T Consensus 166 GLRkk~~~-pg---------------------~~e~~~------------------------~~~~~~------------ 187 (1202)
T KOG0292|consen 166 GLRKKNKA-PG---------------------SLEDQM------------------------RGQQGN------------ 187 (1202)
T ss_pred chhccCCC-CC---------------------Cchhhh------------------------hccccc------------
Confidence 53211000 00 000000 000000
Q ss_pred hhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC
Q psy4869 314 ELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG 393 (2435)
Q Consensus 314 ~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~ 393 (2435)
..++. .. -..-..++.||...|+.++|+|.-.+|++|+.|..|++|.++.
T Consensus 188 -------------~dLfg---------------~~--DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 188 -------------SDLFG---------------QT--DAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred -------------hhhcC---------------Cc--CeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence 00000 00 0011358999999999999999999999999999999999864
Q ss_pred ce-eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeE
Q psy4869 394 EC-ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTV 472 (2435)
Q Consensus 394 ~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I 472 (2435)
.. =.+....+|.+.|.++-|+|..++|++.+.|++|+|||+...+.+..++...+..+.++.+|.. +++++|.+ +-+
T Consensus 238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l-NLfAAgHD-sGm 315 (1202)
T KOG0292|consen 238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL-NLFAAGHD-SGM 315 (1202)
T ss_pred ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc-ceeeeecC-Cce
Confidence 22 2345678999999999999998999999999999999999999999998777777778777765 45554443 333
Q ss_pred EEE---------------------------eCCCCcce--EeecC----cccEEEEEECCCCCEEEEE-ecC-CeEEEEE
Q psy4869 473 KVW---------------------------DPRKKNQA--VSMNN----TYQVTSVAFNDTAECVLTG-GID-NDIKMWD 517 (2435)
Q Consensus 473 ~vw---------------------------D~~~~~~~--~~~~~----~~~v~sv~~sp~g~~l~sg-s~d-g~V~lwD 517 (2435)
.+| |+++.+.. ..+.+ ..++.++.|+|..+.+..+ +.+ |.--++.
T Consensus 316 ~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ 395 (1202)
T KOG0292|consen 316 IVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQ 395 (1202)
T ss_pred EEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEE
Confidence 444 33332211 11111 2467789999866544443 223 3333333
Q ss_pred CCCC-------------------------cEEE-------EEecCCC----------CEEEEEEcCCCCEEEEEECCCcE
Q psy4869 518 LRTN-------------------------SVVQ-------KLRGHSD----------TVTGLSLSPDGSYILSNAMDNTV 555 (2435)
Q Consensus 518 ~~s~-------------------------~~v~-------~l~~h~~----------~V~~i~~spdg~~las~s~Dg~I 555 (2435)
+... -.+. .++.-.+ .+..|-+.-.|..|+. ....|
T Consensus 396 ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~--~~~~v 473 (1202)
T KOG0292|consen 396 IPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR--SPDSV 473 (1202)
T ss_pred ecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE--cCCeE
Confidence 2211 0000 0011111 1222333334444443 45678
Q ss_pred EEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCC
Q psy4869 556 RIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKE 635 (2435)
Q Consensus 556 ~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~ 635 (2435)
.+||+. +.+.+..+.. ..+.-+.||.|..+++--+ ..+|.|.|.+ -+++..+ ...-.|-+-+|+.+|
T Consensus 474 ~lfdvQ----q~~~~~si~~------s~vkyvvws~dm~~vAll~-Kh~i~i~~kk-L~l~~si-hEtiriksgawde~g 540 (1202)
T KOG0292|consen 474 TLFDVQ----QKKKVGSIKV------SKVKYVVWSNDMSRVALLS-KHTITIADKK-LELLCSI-HETIRIKSGAWDEDG 540 (1202)
T ss_pred EEEEee----cceEEEEEec------CceeEEEEcCccchhhhcc-cceEEEEecc-hhheecc-hheeEeeeceeccCc
Confidence 888887 3344444432 2577889999887776554 4567777753 2233332 112356677888877
Q ss_pred CEEEEE
Q psy4869 636 PIIMSA 641 (2435)
Q Consensus 636 ~~Lasg 641 (2435)
=+|++.
T Consensus 541 VfiYtT 546 (1202)
T KOG0292|consen 541 VFIYTT 546 (1202)
T ss_pred eEEEEe
Confidence 666554
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=294.87 Aligned_cols=287 Identities=22% Similarity=0.390 Sum_probs=249.3
Q ss_pred eEecccCCcEEEEEECCC-CCEEEEEeCCCeEEEEecCCce----eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 356 MLLEGHGGEIFCSKYHPD-GQYIASSGYDRQIFIWSVYGEC----ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~~----~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
-.+++|++.|+.++..+. .+.|++++.|..+.+|++.... .....+.+|+..|.+++.++||++.++++.|+.++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 468899999999999987 5689999999999999987432 24577899999999999999999999999999999
Q ss_pred EEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecC--cccEEEEEECCC--CCEEEE
Q psy4869 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN--TYQVTSVAFNDT--AECVLT 506 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~--~~~v~sv~~sp~--g~~l~s 506 (2435)
+||+.+|+..+.+.+|...|.+++|++++ ..+++|+.|.+|++|+............ ...|+|++|+|+ ..+|++
T Consensus 89 lWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 89 LWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 99999999999999999999999999987 5678999999999999876554444433 678999999998 789999
Q ss_pred EecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEE
Q psy4869 507 GGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586 (2435)
Q Consensus 507 gs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~ 586 (2435)
++.|++|++||+++.+....+.+|.+.++.++++|||..+++|+.||.+.+||++ ..+++..+... ..|.+
T Consensus 168 ~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~----~~k~lysl~a~-----~~v~s 238 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN----EGKNLYSLEAF-----DIVNS 238 (315)
T ss_pred ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc----CCceeEeccCC-----CeEee
Confidence 9999999999999999999999999999999999999999999999999999998 45666666544 37899
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC----C-----CCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG----H-----NGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 587 v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~----h-----~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
++|+|+...|+.+ .+..|+|||+++++++..+.- . .-...+++|++||..|++|-.|+.|++|++.
T Consensus 239 l~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 239 LCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999986665555 455699999999988766642 1 1224578999999999999999999999874
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=306.79 Aligned_cols=307 Identities=22% Similarity=0.321 Sum_probs=257.8
Q ss_pred ccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy4869 1122 AHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1200 (2435)
Q Consensus 1122 ~h~~~V~~v~fsp-~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd 1200 (2435)
...+.|.+++|+| ....++++++|++||+|+++....... +....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc----hhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 3678899999999 455667999999999999987422221 23467999999999999999999999999999999
Q ss_pred ccCCceeeEeeccCCCEEEEEEeeCCC--EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCc--eEEEEEECCCeEE
Q psy4869 1201 LDYGDCHKSLLAHEDSVTGVTFVPKTH--YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQ--IQVVTGGGDKSVK 1276 (2435)
Q Consensus 1201 ~~t~~~~~~~~~h~~~V~~i~~spd~~--~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~--~~lv~g~~d~~v~ 1276 (2435)
+.+++ +..+..|.++|..+.|.+... .|++|++|++|++||.|+..++.++.+++.+|..+. ..++++..++.|.
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIA 179 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEE
Confidence 99995 678889999999999998655 899999999999999999999999999999987654 4688999999999
Q ss_pred EEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccc--eEEEEecC
Q psy4869 1277 LWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF--KFFISLYG 1354 (2435)
Q Consensus 1277 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~--k~i~~~~~ 1354 (2435)
+|+|+... .......++++.+++|+++.+|.+.+|+|+.+|++.|.+++.. +.-.+|+.
T Consensus 180 vynL~n~~-------------------te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 180 VYNLENPP-------------------TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred EEEcCCCc-------------------chhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 99997332 2344556788999999999999999999999999999998876 33344444
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEE
Q psy4869 1355 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434 (2435)
Q Consensus 1355 h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~ 1434 (2435)
|+..-. ..+..+.|+.|+|||..+.|+|+|.||.+.+||-+.+.+|+
T Consensus 241 HR~~~~---------------------------------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 241 HRSTNS---------------------------------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred eccCCC---------------------------------CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh
Confidence 431100 11124589999999999999999999999999999999999
Q ss_pred EEe-----ecccccCCCCCccccccCccccccchh---hhhHHHHHhhhhhhhhhcccc
Q psy4869 1435 TLH-----ICSCSLNSPMNSVHLNSCPALEASNDI---AELLMECLATMKEYEVECKEM 1485 (2435)
Q Consensus 1435 ~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~pr~~ 1485 (2435)
.++ +..+.|+.++..++++.+|+|++|.+. ..+..++++...+.|+|||.+
T Consensus 288 ~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~~~~~I~l~~~~~~evK~r~~ 346 (347)
T KOG0647|consen 288 TSETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQYKPQIFLHPVSTEEVKPRPK 346 (347)
T ss_pred ccCcCCCccceeEecCCCCEEEEEeecccccccccCCCCCCCeEEEeeccccccccCCC
Confidence 866 667899999999999999999999876 445688888888888998853
|
|
| >cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=335.56 Aligned_cols=183 Identities=31% Similarity=0.574 Sum_probs=141.7
Q ss_pred CCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCC
Q psy4869 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKG 2254 (2435)
Q Consensus 2175 P~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~ 2254 (2435)
|++||||+ .+.++||+|||.||+|| |||++++||++++++++.
T Consensus 1 P~~~d~r~-----~~~~~~v~dQg~cgsCw--------------------------------Afa~~~~le~~~~i~~~~ 43 (210)
T cd02248 1 PESVDWRE-----KGAVTPVKDQGSCGSCW--------------------------------AFSTVGALEGAYAIKTGK 43 (210)
T ss_pred CCcccCCc-----CCCCCCCccCCCCcchH--------------------------------HhHHHHHHHHHHHHHcCC
Confidence 78999999 67799999999999999 999999999999999886
Q ss_pred CcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcccc-----------------
Q psy4869 2255 QVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRY----------------- 2317 (2435)
Q Consensus 2255 ~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~----------------- 2317 (2435)
... ||+|+|+ +|... .+.||.||.+..|++|++++|+++|++|||......+.
T Consensus 44 ~~~--lS~q~l~----~c~~~----~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~i~ 113 (210)
T cd02248 44 LVS--LSEQQLV----DCSTS----GNNGCNGGNPDNAFEYVKNGGLASESDYPYTGKDGTCKYNSSKVGAKITGYSNVP 113 (210)
T ss_pred Ccc--cCHHHHh----ccCCC----CCCCCCCCCHHHhHHHHHHCCcCccccCCccCCCCCccCCCCcccEEEeeEEEcC
Confidence 554 9999999 88753 35689999999999999999999999999975321110
Q ss_pred ---ccCcccceeecccCCcccccceeeEEEEecCC-----CcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCce
Q psy4869 2318 ---IEGIGHAASVMGSSNPEVNNFEKVIRLYSCEG-----SINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGL 2389 (2435)
Q Consensus 2318 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy 2389 (2435)
...++..+...+|+.+.+..+. .|..|..+. .....++|||+|||||++ .+.+|||||||||+.||++||
T Consensus 114 ~~~~~~ik~~l~~~gPV~~~~~~~~-~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~~~-~~~~ywiv~NSWG~~WG~~Gy 191 (210)
T cd02248 114 PGDEEALKAALANYGPVSVAIDASS-SFQFYKGGIYSGPCCSNTNLNHAVLLVGYGTE-NGVDYWIVKNSWGTSWGEKGY 191 (210)
T ss_pred CCcHHHHHHHHhhcCCEEEEEecCc-ccccCCCCceeCCCCCCCcCCEEEEEEEEeec-CCceEEEEEcCCCCccccCcE
Confidence 1122333334455554443332 122222221 112346799999999975 588999999999999999999
Q ss_pred EEEEeeCccccccccee
Q psy4869 2390 FKIRRGVNMCSIEDSVM 2406 (2435)
Q Consensus 2390 ~~i~r~~n~cgi~~~~~ 2406 (2435)
|||.|+.|.|||+..+.
T Consensus 192 ~~i~~~~~~cgi~~~~~ 208 (210)
T cd02248 192 IRIARGSNLCGIASYAS 208 (210)
T ss_pred EEEEcCCCccCceeeee
Confidence 99999999999997654
|
Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h |
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-29 Score=291.76 Aligned_cols=527 Identities=16% Similarity=0.226 Sum_probs=387.6
Q ss_pred EEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCC--------CEEEEEccCCee
Q psy4869 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT--------DIVLWDVVAECG 151 (2435)
Q Consensus 80 ~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg--------~I~iWd~~~~~~ 151 (2435)
.+-+-|-|..+.- ..+.+.+|+++.. ..+.+.||...|.|++.+|+.-++|+|-.-| .|||||..+...
T Consensus 70 Nly~lptgE~vyf--vA~V~Vl~n~ee~-~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T 146 (626)
T KOG2106|consen 70 NLYLLPTGELVYF--VAAVGVLYNWEER-SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST 146 (626)
T ss_pred eeEEccCccEEEE--eccEEEEEeehhh-hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee
Confidence 3555566544322 1234456666432 4567889999999999999999999986655 499999999999
Q ss_pred EEEEecCCCcEEEEEEeecCCCcEEEEE--eCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEE
Q psy4869 152 LHRLSGHKGVITDIRFMSQPGHHFVVSS--AKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKV 229 (2435)
Q Consensus 152 ~~~l~gH~~~V~~v~~~~~~~~~~l~S~--s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~v 229 (2435)
++++......|+||+|++.+.+.+|..- +.+..+.+||+..+......+.-...|....|+|.+..++.....+++.+
T Consensus 147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~F 226 (626)
T KOG2106|consen 147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYF 226 (626)
T ss_pred eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEE
Confidence 9999888889999999988877766554 67888999999999999888888899999999998888777777899999
Q ss_pred EEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCcccccc
Q psy4869 230 WNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGI 309 (2435)
Q Consensus 230 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2435)
|+++.+...... -..+......+ -.+....+|+
T Consensus 227 w~~~~~~l~k~~------------~~fek~ekk~V--------l~v~F~engd--------------------------- 259 (626)
T KOG2106|consen 227 WTLRGGSLVKRQ------------GIFEKREKKFV--------LCVTFLENGD--------------------------- 259 (626)
T ss_pred EEccCCceEEEe------------eccccccceEE--------EEEEEcCCCC---------------------------
Confidence 999876432110 00000000000 0000111111
Q ss_pred chhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy4869 310 DTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIW 389 (2435)
Q Consensus 310 ~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iw 389 (2435)
...+.++|.+.||+.+..... .....|.+.|.++....+|.+|- |+.|.+|..|
T Consensus 260 --------viTgDS~G~i~Iw~~~~~~~~-----------------k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~W 313 (626)
T KOG2106|consen 260 --------VITGDSGGNILIWSKGTNRIS-----------------KQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILW 313 (626)
T ss_pred --------EEeecCCceEEEEeCCCceEE-----------------eEeeecCCceEEEEEecCccEee-cCccceEEec
Confidence 123567889999997654322 12338999999999999998766 9999999999
Q ss_pred ecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC
Q psy4869 390 SVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD 469 (2435)
Q Consensus 390 d~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D 469 (2435)
|-.-.......+....++|+.++=... -|+.|...+.|.-=.++++-. ....+|.+....++.+|.. ..+++++.|
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~--di~vGTtrN~iL~Gt~~~~f~-~~v~gh~delwgla~hps~-~q~~T~gqd 389 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKG--DILVGTTRNFILQGTLENGFT-LTVQGHGDELWGLATHPSK-NQLLTCGQD 389 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCC--cEEEeeccceEEEeeecCCce-EEEEecccceeeEEcCCCh-hheeeccCc
Confidence 943222233345566788888875432 388888777777767765543 3456888889999888876 567799999
Q ss_pred CeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy4869 470 CTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSN 549 (2435)
Q Consensus 470 g~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~ 549 (2435)
+.+++|+ ..+.........++.|+.|+|.| .++.|...|...+.|.++...+..-.. ..++++++|+|+|.+||.|
T Consensus 390 k~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 390 KHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred ceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEe
Confidence 9999999 66777777888899999999999 999999999999999999766655554 8899999999999999999
Q ss_pred ECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcE---EE---------
Q psy4869 550 AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI---AY--------- 617 (2435)
Q Consensus 550 s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~---~~--------- 617 (2435)
+.|+.|.||-+.. .++......-+.. ..|+.+.||+|++||.+-+.|-.|.+|....-+. ++
T Consensus 466 s~d~~iyiy~Vs~---~g~~y~r~~k~~g---s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c 539 (626)
T KOG2106|consen 466 SHDNHIYIYRVSA---NGRKYSRVGKCSG---SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTC 539 (626)
T ss_pred cCCCeEEEEEECC---CCcEEEEeeeecC---ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEE
Confidence 9999999999985 3343333333322 5899999999999999999999999995432111 10
Q ss_pred -----Ee-cCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceee-cCceeeEEEecCCCCeEEEEecCCce
Q psy4869 618 -----KL-PGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILR-SGKGRVHTMVNDKHRQILCCHGNDNV 690 (2435)
Q Consensus 618 -----~l-~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~ 690 (2435)
++ ..|...|+.++-+.+++++|+|.+.|+|+++.++-....+....- .+...+..+..-...+.+.+-+.|..
T Consensus 540 ~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~S 619 (626)
T KOG2106|consen 540 TLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTS 619 (626)
T ss_pred EEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCce
Confidence 11 236777899999999999999999999999999965555554433 33344444444444444444449998
Q ss_pred EEeeee
Q psy4869 691 VDLFYF 696 (2435)
Q Consensus 691 ~~~~~~ 696 (2435)
+..|.+
T Consensus 620 i~qW~l 625 (626)
T KOG2106|consen 620 IMQWRL 625 (626)
T ss_pred EEEEEe
Confidence 888864
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=300.83 Aligned_cols=290 Identities=22% Similarity=0.451 Sum_probs=260.1
Q ss_pred CeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEE
Q psy4869 108 DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKI 187 (2435)
Q Consensus 108 ~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~i 187 (2435)
+....+.||.+.|.|+++.|....++||+.|++|+|||+.++++..++.||...|..|++++ -+.+|++++.|++|+.
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~--rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK--RHPYLFSAGEDKQVKC 219 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc--cCceEEEecCCCeeEE
Confidence 34457889999999999999999999999999999999999999999999999999999984 4679999999999999
Q ss_pred EeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeE
Q psy4869 188 WDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267 (2435)
Q Consensus 188 Wd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 267 (2435)
||++.++.++.+.+|-..|++++.+|.-..|++|+.|.++|+||+|+..
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~------------------------------- 268 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA------------------------------- 268 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-------------------------------
Confidence 9999999999999999999999999999999999999999999998531
Q ss_pred EEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccC
Q psy4869 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGR 347 (2435)
Q Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 347 (2435)
T Consensus 269 -------------------------------------------------------------------------------- 268 (460)
T KOG0285|consen 269 -------------------------------------------------------------------------------- 268 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC
Q psy4869 348 TSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ 427 (2435)
Q Consensus 348 ~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 427 (2435)
++.++.||..+|..+.+.|-...+++|+.|++|++||+..+. ....+..|+..|++++.+|....+++++.|
T Consensus 269 ------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk-t~~tlt~hkksvral~lhP~e~~fASas~d- 340 (460)
T KOG0285|consen 269 ------SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK-TMITLTHHKKSVRALCLHPKENLFASASPD- 340 (460)
T ss_pred ------eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc-eeEeeecccceeeEEecCCchhhhhccCCc-
Confidence 234678999999999999988999999999999999998764 445678899999999999988888888876
Q ss_pred eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe---------ecCcccEEEEEEC
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS---------MNNTYQVTSVAFN 498 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~---------~~~~~~v~sv~~s 498 (2435)
.|+-|++..|..+..+.+|...++++....++ .+++|+++|.+.+||.+++-.... +.....|.+.+|+
T Consensus 341 nik~w~~p~g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 341 NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred cceeccCCccchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 68999999999999999999999999887765 788999999999999987654332 2345678999999
Q ss_pred CCCCEEEEEecCCeEEEEECCC
Q psy4869 499 DTAECVLTGGIDNDIKMWDLRT 520 (2435)
Q Consensus 499 p~g~~l~sgs~dg~V~lwD~~s 520 (2435)
..|..|++|..|..|.+|.-..
T Consensus 419 ktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 419 KTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccCceEEeccCCcceEEEeccc
Confidence 9999999999999999997553
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=304.66 Aligned_cols=291 Identities=30% Similarity=0.498 Sum_probs=257.5
Q ss_pred ccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEE
Q psy4869 66 HEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 66 ~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd 145 (2435)
++...+.|+...|+.+-+.|+-..++++++|+.|++||..+++....++||++.|..++|+..|.+||++|.|-.+++||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 45566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-CeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCC
Q psy4869 146 VVA-ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSND 224 (2435)
Q Consensus 146 ~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~D 224 (2435)
... .+++..+.||...|.++.|.|. +.+++|+++|.+|+.||..+|.|+.++.+|...|.-+..+.||.++++++.|
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 987 5677888999999999999976 4689999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCc
Q psy4869 225 AELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDD 304 (2435)
Q Consensus 225 g~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (2435)
.+|++|-+.++++...
T Consensus 257 qtl~vW~~~t~~~k~~---------------------------------------------------------------- 272 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAE---------------------------------------------------------------- 272 (406)
T ss_pred ceEEEEEeccchhhhh----------------------------------------------------------------
Confidence 9999998886543211
Q ss_pred cccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECC------------
Q psy4869 305 FAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHP------------ 372 (2435)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fsp------------ 372 (2435)
+++|..+|-|++|-|
T Consensus 273 -----------------------------------------------------lR~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 273 -----------------------------------------------------LREHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred -----------------------------------------------------hhccccceEEEEecccccCcchhhccC
Confidence 112222222222221
Q ss_pred ---CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCcc
Q psy4869 373 ---DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTF 449 (2435)
Q Consensus 373 ---dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~ 449 (2435)
.|+++++++.|++|++||+..+ ..+..+.+|.+.|.+++|+|.|++|+++.+|+++++||+.+++++..+..|...
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf 378 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF 378 (406)
T ss_pred CCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce
Confidence 3579999999999999999876 456789999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccCCCeEEEEEeCCCeEEEEeC
Q psy4869 450 VNSCDPVRRGQLLIASGSDDCTVKVWDP 477 (2435)
Q Consensus 450 v~sv~~~~~~~~llasgs~Dg~I~vwD~ 477 (2435)
+++++|....+ ++++|+-|.++++|.-
T Consensus 379 vt~lDfh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCc-eEEeccccceeeeeec
Confidence 99999988775 7889999999999974
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=313.50 Aligned_cols=279 Identities=24% Similarity=0.403 Sum_probs=244.5
Q ss_pred EEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECC
Q psy4869 27 VFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLD 105 (2435)
Q Consensus 27 ~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~ 105 (2435)
|.+..|.|+||.|++| .+|.+.+|+... -....++..|...|..+.|++++..+++|..+|.|++|+..
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~----------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTS----------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCce----------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc
Confidence 4455899999999999 899999999742 22345677899999999999999999999999999999998
Q ss_pred CCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcE
Q psy4869 106 TTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFV 185 (2435)
Q Consensus 106 ~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I 185 (2435)
-.........|+..|++++|+|....++|+|+||+|+|||....+...+|.||...|.+++|+|.. -+|+++|.|..|
T Consensus 169 mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k--gLiasgskDnlV 246 (464)
T KOG0284|consen 169 MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK--GLIASGSKDNLV 246 (464)
T ss_pred hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--ceeEEccCCcee
Confidence 765444444455999999999999999999999999999999999889999999999999999753 479999999999
Q ss_pred EEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceee
Q psy4869 186 KIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVS 265 (2435)
Q Consensus 186 ~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 265 (2435)
++||.++|+|+.++.+|...|.++.|++++++|+++|.|..++++|++..+.
T Consensus 247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE---------------------------- 298 (464)
T KOG0284|consen 247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE---------------------------- 298 (464)
T ss_pred EeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH----------------------------
Confidence 9999999999999999999999999999999999999999999999884210
Q ss_pred eEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccc
Q psy4869 266 KIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDV 345 (2435)
Q Consensus 266 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 345 (2435)
T Consensus 299 -------------------------------------------------------------------------------- 298 (464)
T KOG0284|consen 299 -------------------------------------------------------------------------------- 298 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccceeEecccCCcEEEEEECCC-CCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe
Q psy4869 346 GRTSNLFAPIMLLEGHGGEIFCSKYHPD-GQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS 424 (2435)
Q Consensus 346 ~~~~~~~~p~~~l~gH~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 424 (2435)
+..+++|.+.|+++.|+|- ..+|.+|+.||.|..|.+.........-.+|...|++++|+|=|..|++|+
T Consensus 299 ---------l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgs 369 (464)
T KOG0284|consen 299 ---------LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGS 369 (464)
T ss_pred ---------HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecC
Confidence 1246799999999999994 678999999999999998744333444568999999999999999999999
Q ss_pred CCCeEEEEEC
Q psy4869 425 TDQTLAVWDL 434 (2435)
Q Consensus 425 ~Dg~I~vwd~ 434 (2435)
.|.+++.|..
T Consensus 370 nd~t~rfw~r 379 (464)
T KOG0284|consen 370 NDRTVRFWTR 379 (464)
T ss_pred CCcceeeecc
Confidence 9999999984
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-32 Score=316.63 Aligned_cols=294 Identities=23% Similarity=0.417 Sum_probs=263.6
Q ss_pred ceeEecccCCcEEEEEECC-CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
-++.+.||...|+++.|.| .+.+|++++.|+.|+||++.+....+..+.+|..+|.+++|+++|..|++++.|+.|++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 3578999999999999999 899999999999999999998778889999999999999999999999999999999999
Q ss_pred ECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCC
Q psy4869 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDN 511 (2435)
Q Consensus 433 d~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg 511 (2435)
|.++|+++..+.. ...+.++.|.|+++++|++|+.|+.|+.||++.++.+..+ .|-..|..+.|-++|+++++.++|+
T Consensus 286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence 9999999888863 3457899999999999999999999999999999988887 5778899999999999999999999
Q ss_pred eEEEEECCCCcEEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEc
Q psy4869 512 DIKMWDLRTNSVVQKLR-GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWS 590 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~-~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~s 590 (2435)
.|+||+.+..-++..+. .+.....+|..+|++++++.-+.|..|.+|.+..... ....+.+.||.. .+.-..|.||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r-~nkkK~feGh~v--aGys~~v~fS 441 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR-LNKKKRFEGHSV--AGYSCQVDFS 441 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc-cCHhhhhcceec--cCceeeEEEc
Confidence 99999999887766553 3334577899999999999999999999999764321 233456677753 3567889999
Q ss_pred CCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEec
Q psy4869 591 VSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGE 651 (2435)
Q Consensus 591 pdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~I~vWd 651 (2435)
|||++|++|+.||.+.+||.++-+++..+++|.+++..+.|||... .+|+++.||.|++|+
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999999999999876 899999999999996
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=299.73 Aligned_cols=297 Identities=22% Similarity=0.322 Sum_probs=254.7
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q psy4869 1123 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202 (2435)
Q Consensus 1123 h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~ 1202 (2435)
..+.|+.+.|+|.+..|++++|||.+++||+........+ .|..++++++|.+ ...+++|+.||.|+.+|++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-------~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-------KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-------ecCCceeeeeccC-CceEEEeccCceEEEEEec
Confidence 4678999999999999999999999999999887555444 5899999999985 6789999999999999999
Q ss_pred CCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccc--cCceEEEEEECCCeEEEEEc
Q psy4869 1203 YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYL--PLQIQVVTGGGDKSVKLWQL 1280 (2435)
Q Consensus 1203 t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~--~~~~~lv~g~~d~~v~iwdl 1280 (2435)
++.. ..+..|..+|.||.+.+....+++||||++|++||.|....+..+.....++. ..+.+|++|+.++++.+|||
T Consensus 84 ~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 84 TGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred CCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEc
Confidence 8874 46778999999999999899999999999999999998766666666666664 34668999999999999999
Q ss_pred ccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccc----eEEEEecCCC
Q psy4869 1281 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF----KFFISLYGHK 1356 (2435)
Q Consensus 1281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~----k~i~~~~~h~ 1356 (2435)
++.. .+.+.+.+.++++++|+++.|++..+|++|.||+|.+-+++.. +....|+.|
T Consensus 163 Rn~~-------------------~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH- 222 (323)
T KOG1036|consen 163 RNLD-------------------EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH- 222 (323)
T ss_pred cccc-------------------chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee-
Confidence 8444 3456778899999999999999999999999999999998775 222333333
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEec---ccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeE
Q psy4869 1357 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL---AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1433 (2435)
Q Consensus 1357 ~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~---~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l 1433 (2435)
+... .-.+||++|+|||.++.|||||.||.|.+||+.++|++
T Consensus 223 -----------------------------------r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 223 -----------------------------------RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred -----------------------------------ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 2221 12359999999999999999999999999999999999
Q ss_pred EEEe-----ecccccCCCCCccccccCccccccch-hhhhHHHHHhhhhhhhhhcc
Q psy4869 1434 VTLH-----ICSCSLNSPMNSVHLNSCPALEASND-IAELLMECLATMKEYEVECK 1483 (2435)
Q Consensus 1434 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pr 1483 (2435)
++++ +.+++|+.++..+|++.+|.++.+.. ..+...+.++.+.+.|.+||
T Consensus 268 ~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~e~~pk 323 (323)
T KOG1036|consen 268 KQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLTDYETKPK 323 (323)
T ss_pred hhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEeccccccCCC
Confidence 9987 77889999999999999999999887 77889999999999988886
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=288.31 Aligned_cols=292 Identities=27% Similarity=0.498 Sum_probs=246.2
Q ss_pred CeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCe-eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEE
Q psy4869 108 DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAEC-GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186 (2435)
Q Consensus 108 ~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~ 186 (2435)
.++..+.||++.|+.++|+|+|.+||||+.|..|.+|++...+ ...+++||++.|..|.|.+ ++..|+|+|.|.+|+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~--d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR--DGSHILSCGTDKTVR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc--CCCEEEEecCCceEE
Confidence 3566789999999999999999999999999999999976544 5678899999999999985 456799999999999
Q ss_pred EEeccCCccccccccccceEEEEEEEeCCCe-EEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceee
Q psy4869 187 IWDADTGDCFKTMAAHLTEVWGVCVMREDSY-LISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVS 265 (2435)
Q Consensus 187 iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~-l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 265 (2435)
.||.++|++.+.+++|..-|+.++-...|.. +.+++.|+++++||+|.+.++.+.
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~------------------------ 171 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF------------------------ 171 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc------------------------
Confidence 9999999999999999999999986555655 558999999999999965332110
Q ss_pred eEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccc
Q psy4869 266 KIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDV 345 (2435)
Q Consensus 266 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 345 (2435)
T Consensus 172 -------------------------------------------------------------------------------- 171 (338)
T KOG0265|consen 172 -------------------------------------------------------------------------------- 171 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC
Q psy4869 346 GRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST 425 (2435)
Q Consensus 346 ~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 425 (2435)
...-.++++.|..++..+.+|+-|+.|++||++.+ .....+.||..+|+.|..+++|.++++-+.
T Consensus 172 --------------~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 172 --------------ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred --------------ccceeEEEEEecccccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccc
Confidence 01224678899999999999999999999999754 346788999999999999999999999999
Q ss_pred CCeEEEEECCCC----ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCC
Q psy4869 426 DQTLAVWDLEKG----QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTA 501 (2435)
Q Consensus 426 Dg~I~vwd~~tg----~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g 501 (2435)
|.++++||++-- +++..+.+|... .....-.++|+|++
T Consensus 237 d~tvrvwd~rp~~p~~R~v~if~g~~hn--------------------------------------feknlL~cswsp~~ 278 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQRCVKIFQGHIHN--------------------------------------FEKNLLKCSWSPNG 278 (338)
T ss_pred cceEEEEEecccCCCCceEEEeecchhh--------------------------------------hhhhcceeeccCCC
Confidence 999999998631 123333332211 11123357899999
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy4869 502 ECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIW 558 (2435)
Q Consensus 502 ~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lW 558 (2435)
+++-+|+.|..+++||......+..+.||.+.|++++|+|....|.+++.|++|.+=
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 999999999999999999999999999999999999999999999999999999873
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.1e-30 Score=290.61 Aligned_cols=335 Identities=17% Similarity=0.220 Sum_probs=286.6
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD 1152 (2435)
..+..|..|...|.+++.+|+.+++++|+.|..-.+|++.+|.....+.+|++.|.++.|+.++.+|++|+.+|.|++|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEE
Q psy4869 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT 1232 (2435)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsg 1232 (2435)
..++.....+. ..-..+-=+.|+|.+..|+.|+.||.|.+|.+.++...+.+.+|..++++=.|.|+|+.++++
T Consensus 135 ~stg~~~~~~~------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tg 208 (399)
T KOG0296|consen 135 VSTGGEQWKLD------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTG 208 (399)
T ss_pred cccCceEEEee------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEE
Confidence 99988777663 445678889999999999999999999999999988888999999999999999999999999
Q ss_pred ECCCcEEEEECCCCceEEEEe------eCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeee
Q psy4869 1233 SKDGRVKQWDADNFERIVTLH------FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLL 1306 (2435)
Q Consensus 1233 s~Dg~I~vwD~~~~~~v~~~~------~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 1306 (2435)
..||+|++||+.+.+++..+. .+...+......++.|..++.+.+-.....++..-.+.....
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~----------- 277 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE----------- 277 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc-----------
Confidence 999999999999999988887 333334444556788888888888877666654443321000
Q ss_pred ecccccccccEEEEEec---CCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy4869 1307 HTRTLKLEEQVLCARVS---PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1383 (2435)
Q Consensus 1307 ~~~~~~~~~~i~~ia~s---pdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iw 1383 (2435)
.....+..+.|+.+. ..=.++|+|+.||+|.|||+...++...+. |..+|+.+.|-+ ..+|++++.||.|+.|
T Consensus 278 --l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 278 --LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQW 353 (399)
T ss_pred --ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEee
Confidence 111223444455444 455678999999999999999988765555 777899999998 8999999999999999
Q ss_pred eCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1384 GLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1384 dl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
|.++|++...+.+|...|.+++..|+.++++|+|.|+..+|++..
T Consensus 354 DaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 354 DARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999999999999999999864
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=299.84 Aligned_cols=286 Identities=26% Similarity=0.437 Sum_probs=267.4
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
..+.||..+|+.+.|+|+-..+++++.|++|++||..++.. ...+++|...|.+|+|+..|++|++++.|-.+++||.+
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-hhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 45778999999999999999999999999999999987644 67889999999999999999999999999999999987
Q ss_pred C-CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeE
Q psy4869 436 K-GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDI 513 (2435)
Q Consensus 436 t-g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V 513 (2435)
+ -++++.+.+|...|.++.|.|.+ ..+++++.|.+|+.|++.++.++..+ .|...+..++.+.||.++++++.|.+|
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence 6 46777888999999999999998 67889999999999999999999998 467789999999999999999999999
Q ss_pred EEEECCCCcEEEEEecCCCCEEEEEEcCC---------------CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccc
Q psy4869 514 KMWDLRTNSVVQKLRGHSDTVTGLSLSPD---------------GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH 578 (2435)
Q Consensus 514 ~lwD~~s~~~v~~l~~h~~~V~~i~~spd---------------g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~ 578 (2435)
++|-+.++++...++.|..+|-|++|.|. +.++.+++.|++|++||+. .+.|+.++.+|.
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~----tg~cL~tL~ghd- 334 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS----TGMCLFTLVGHD- 334 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc----CCeEEEEEeccc-
Confidence 99999999999999999999999999983 3589999999999999998 579999999996
Q ss_pred ccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 579 NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 579 ~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
+.|..++|+|.|+||+++.+|+++++||++++++...+..|..-|+++.|+.+.+++++|+-|.++++|+
T Consensus 335 ---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 335 ---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 4899999999999999999999999999999999999999999999999999999999999999999996
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=306.71 Aligned_cols=281 Identities=22% Similarity=0.455 Sum_probs=248.1
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEE
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIK 441 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~ 441 (2435)
+.+|..+.|.|+|+.|++|+..|.+.+|+... +.....++.|..+|+.+.|++++.++++|..+|.|++|+..- +.+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhH
Confidence 45789999999999999999999999999632 222345688999999999999999999999999999999854 4455
Q ss_pred EEeccC-ccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 442 KMKGHS-TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 442 ~l~~h~-~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
.++.|. ..|.+++|+|. +..|+++++||+|+|||....+....+ .|...|.++.|+|...+|++|+.|..|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 556555 89999999995 478899999999999999877765555 577889999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCC-CCEEEE
Q psy4869 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS-GLYVTA 598 (2435)
Q Consensus 520 s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spd-g~~Las 598 (2435)
++.++.++.+|+..|..+.|+|++++|+++|.|..++++|+|. .+.+..+++|. +.+.++.|+|- -.+|.+
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~----mkEl~~~r~Hk----kdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT----MKELFTYRGHK----KDVTSLTWHPLNESLFTS 324 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH----hHHHHHhhcch----hhheeeccccccccceee
Confidence 9999999999999999999999999999999999999999993 45677788886 47899999995 467888
Q ss_pred ecCCCeEEEEECCCCcEEEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 599 GSADKCVYIWDTTTRRIAYKLP-GHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 599 gs~Dg~V~iwd~~s~~~~~~l~-~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
|+.||.|..|.+...+++..+. +|.+.|++++|||-|.+|++|+.|.++++|.-.
T Consensus 325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999999999998666666654 699999999999999999999999999999876
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-28 Score=299.03 Aligned_cols=380 Identities=23% Similarity=0.393 Sum_probs=297.4
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccC
Q psy4869 113 FTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADT 192 (2435)
Q Consensus 113 l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~t 192 (2435)
|+.-+..|..++|+|....++++=..|.|.+||-+-+.++.+|..|.|+|..|+||| .+.+++|||.|.+|++|+..+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~--~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP--TQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC--CCCeEEecCCccEEEEEeccc
Confidence 455678899999999999999999999999999999999999999999999999995 456899999999999999999
Q ss_pred CccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEee
Q psy4869 193 GDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQII 272 (2435)
Q Consensus 193 g~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 272 (2435)
.+|+.++.+|-+-|..+.|++.-.+++++|+|.+||||+..++++
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~----------------------------------- 127 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC----------------------------------- 127 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce-----------------------------------
Confidence 999999999999999999999999999999999999999765321
Q ss_pred cccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccc
Q psy4869 273 NELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLF 352 (2435)
Q Consensus 273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 352 (2435)
T Consensus 128 -------------------------------------------------------------------------------- 127 (1202)
T KOG0292|consen 128 -------------------------------------------------------------------------------- 127 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEE---EEEeCCCeE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHI---FTCSTDQTL 429 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L---~s~s~Dg~I 429 (2435)
+.++.||+.-|.|..|+|....+++++-|-+|||||+.+-.+. +..+. ++.=...+..+ +-|+.|-
T Consensus 128 --iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk------~~~pg-~~e~~~~~~~~~~dLfg~~Da-- 196 (1202)
T KOG0292|consen 128 --IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKK------NKAPG-SLEDQMRGQQGNSDLFGQTDA-- 196 (1202)
T ss_pred --EEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhcc------CCCCC-CchhhhhccccchhhcCCcCe--
Confidence 2357899999999999999999999999999999999763221 11111 11000011111 1111121
Q ss_pred EEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc---eEeecCcccEEEEEECCCCCEEEE
Q psy4869 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ---AVSMNNTYQVTSVAFNDTAECVLT 506 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~---~~~~~~~~~v~sv~~sp~g~~l~s 506 (2435)
-..+.+.||...|+-++|+|.- -+|++|++|..|++|.+...+. -....|.+.|.++-|+|..+++++
T Consensus 197 --------VVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlS 267 (1202)
T KOG0292|consen 197 --------VVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILS 267 (1202)
T ss_pred --------eeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEe
Confidence 2235678999999999999876 4788999999999999875432 112368889999999999999999
Q ss_pred EecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEE
Q psy4869 507 GGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586 (2435)
Q Consensus 507 gs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~ 586 (2435)
.+.|+.|++||+...+.+.+++-..+.-..++-+|..+++++| .|+-+.+|-++. .++ .
T Consensus 268 nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleR----Erp--------------a-- 326 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLER----ERP--------------A-- 326 (1202)
T ss_pred cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcc----cCc--------------e--
Confidence 9999999999999999999998888999999999999988765 677777777762 111 1
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCcE--EEEecCC---CCCeeEEEEcCCCCE-EEEEECC-CcEEEecCC
Q psy4869 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRI--AYKLPGH---NGSVNDVQFHPKEPI-IMSASSD-KTIYLGESP 653 (2435)
Q Consensus 587 v~~spdg~~Lasgs~Dg~V~iwd~~s~~~--~~~l~~h---~~~V~~l~fspd~~~-Lasgs~D-g~I~vWd~~ 653 (2435)
.+.+ ++.|.-.- |..|+.+|+.+.+. +..++.. ..++.++.++|.... |++...| |.--++.++
T Consensus 327 ~~v~--~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 327 YAVN--GNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred EEEc--CCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 1222 34444444 89999999988643 3444433 367899999998774 4444444 444556655
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=312.98 Aligned_cols=290 Identities=22% Similarity=0.371 Sum_probs=258.5
Q ss_pred eEEEEEecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEEccC-CceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q psy4869 1073 KFFISLYGHKLPVLSLDMSY-DSTLIATGSGDRTVKVWGLDY-GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~sp-dg~~L~Sgs~Dg~I~vWd~~t-~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~i 1150 (2435)
+.+..+.||...|.++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|.+++|+.+|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 56677889999999999999 789999999999999999965 8999999999999999999999999999999999999
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF 1229 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~l 1229 (2435)
||+++++.+..+. ....+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..|.|.+++..+
T Consensus 285 wDtETG~~~~~f~-------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eccccceEEEEEe-------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 9999999888774 46678999999988 889999999999999999999999999999999999999999999
Q ss_pred EEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecc
Q psy4869 1230 FTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1309 (2435)
Q Consensus 1230 vsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1309 (2435)
++.+.|+.+++|+.+.+..+..+..
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~------------------------------------------------------- 382 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIAD------------------------------------------------------- 382 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcc-------------------------------------------------------
Confidence 9999999999999887654332110
Q ss_pred cccccccEEEEEecCCcceeEEeecCCeEEEEEccc---ceEEEEecCCC--CCeEEEEEecCCCEEEEEeCCCcEEEEe
Q psy4869 1310 TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT---FKFFISLYGHK--LPVLSLDMSYDSTLIATGSGDRTVKVWG 1384 (2435)
Q Consensus 1310 ~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~---~k~i~~~~~h~--~~V~~la~spdg~~L~sGg~Dg~V~iwd 1384 (2435)
.......|+...|++.+|+.-+.++.+.+|.... ......|++|. |--..+.|||||++|++|+.||.+.+||
T Consensus 383 --~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 383 --PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred --hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 1123466889999999999999999999998754 22334666776 4467889999999999999999999999
Q ss_pred CCCCceEEEecccccceEEEEEeeCC-CEEEEEeCCCcEEEEE
Q psy4869 1385 LDYGDCHKSLLAHEDSVTGVTFVPKT-HYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1385 l~~gk~~~~~~~h~~~V~~laf~P~~-~~laSgg~Dg~V~lWd 1426 (2435)
.++-+++..+++|..++..+.|||.. ..+|++|+||.|++||
T Consensus 461 wkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 461 WKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred chhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999999976 7999999999999997
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=298.05 Aligned_cols=292 Identities=25% Similarity=0.470 Sum_probs=251.7
Q ss_pred ceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC--ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG--ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~--~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~v 431 (2435)
...++..|.++|.-+.|+++|+|||+++.|.+..+|++.. ..+....+.+|..+|..+.|+||.++|++|+.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 3467899999999999999999999999999999998753 34456788999999999999999999999999999999
Q ss_pred EECCCCceEEEEe-ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceE-eecCcccEEEEEECCCCCEEEEEec
Q psy4869 432 WDLEKGQRIKKMK-GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV-SMNNTYQVTSVAFNDTAECVLTGGI 509 (2435)
Q Consensus 432 wd~~tg~~v~~l~-~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~-~~~~~~~v~sv~~sp~g~~l~sgs~ 509 (2435)
||+.+|...+.+. +|...+.+++|.|++ ..+++|+.|+.+..||+.....-. .-.....|.+++..+||+++++.+.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 9999999887775 456788999999998 457899999999999987543211 1123356999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEE
Q psy4869 510 DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589 (2435)
Q Consensus 510 dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~ 589 (2435)
|..|++|+.+.......+. ...+|++++.+.||+++++.-.+..+++||+. ..+.++.+.||... .-+.+.+|
T Consensus 375 d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~----e~~lv~kY~Ghkq~--~fiIrSCF 447 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLE----ENKLVRKYFGHKQG--HFIIRSCF 447 (519)
T ss_pred ccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecc----hhhHHHHhhccccc--ceEEEecc
Confidence 9999999998776654444 45689999999999999999999999999998 35677788888642 35667777
Q ss_pred cC-CCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEecCC
Q psy4869 590 SV-SGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESP 653 (2435)
Q Consensus 590 sp-dg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~I~vWd~~ 653 (2435)
.- +..++++||.|+.|+||+..+|+++.++.||...|++|+|+|..+ +||+||+||+|+||...
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 65 448999999999999999999999999999999999999999766 99999999999999875
|
|
| >PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-32 Score=323.53 Aligned_cols=186 Identities=33% Similarity=0.584 Sum_probs=136.9
Q ss_pred CCCccccCccCCCCC-CCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2174 IPETFDAREEWPQCK-DVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~-~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
||++||||+ . +.++||+|||.||+|| |||+++++|.+++++.
T Consensus 1 lP~~~D~r~-----~~~~~~~v~dQg~~gsCw--------------------------------afa~~~~~e~~~~~~~ 43 (219)
T PF00112_consen 1 LPKSFDWRD-----KGGRITPVRDQGSCGSCW--------------------------------AFAAAAALESRLAIQN 43 (219)
T ss_dssp STSSEEGGG-----TTTCSG---BTTSSBTHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCEeccc-----CCCCcCccccCCcccccc--------------------------------cchhccceeccccccc
Confidence 799999999 5 4799999999999999 9999999999999998
Q ss_pred C-CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHH-cCccCCCcccCCCCCc-ccc------------
Q psy4869 2253 K-GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWIN-AGLVDGGDYGTHDVSM-GRY------------ 2317 (2435)
Q Consensus 2253 ~-~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~-~Gi~~~~~y~~~~~~~-~~~------------ 2317 (2435)
+ .... ||+|+|+ +|.. ..+.+|+||++..|++|+++ +|+++|.+|||..... .+.
T Consensus 44 ~~~~~~--lS~q~l~----~~~~----~~~~~c~gg~~~~a~~~~~~~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~ 113 (219)
T PF00112_consen 44 NGKNVD--LSEQYLI----DCSN----KYNKGCDGGSPFDALKYIKNNNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIK 113 (219)
T ss_dssp TSSCEE--B-HHHHH----HHST----GTSSTTBBBEHHHHHHHHHHHTSBEBTTTS--SSSSSCSSCHSGGGEEEBEES
T ss_pred cccccc--ccccccc----cccc----ccccccccCcccccceeecccCccccccccccccccccccccccccccccccc
Confidence 4 4443 9999999 7774 12348999999999999999 9999999999986541 111
Q ss_pred ---------ccCcccceeecccCCcc-------cccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCC
Q psy4869 2318 ---------IEGIGHAASVMGSSNPE-------VNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYN 2381 (2435)
Q Consensus 2318 ---------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG 2381 (2435)
+..++..+...+|+... +..|+.+ +|.........++|||+|||||++ .+++|||||||||
T Consensus 114 ~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~g--i~~~~~~~~~~~~Hav~iVGy~~~-~~~~~wiv~NSWG 190 (219)
T PF00112_consen 114 GYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSG--IYDPPDCSNESGGHAVLIVGYDDE-NGKGYWIVKNSWG 190 (219)
T ss_dssp EEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESS--EECSTSSSSSSEEEEEEEEEEEEE-TTEEEEEEE-SBT
T ss_pred ccccccccchhHHHHHHhhCceeeeeeeccccccccccce--eeeccccccccccccccccccccc-cceeeEeeehhhC
Confidence 01111122223444333 3344443 333322223467899999999976 5899999999999
Q ss_pred CCcCCCceEEEEeeCc-ccccccceeEEE
Q psy4869 2382 QGWGEQGLFKIRRGVN-MCSIEDSVMAGE 2409 (2435)
Q Consensus 2382 ~~WG~~Gy~~i~r~~n-~cgi~~~~~~~~ 2409 (2435)
+.||++|||||.|+.| +||||..+.+++
T Consensus 191 ~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 191 TDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp TTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred CccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 9999999999999997 999999988653
|
; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A .... |
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=270.21 Aligned_cols=289 Identities=24% Similarity=0.447 Sum_probs=241.3
Q ss_pred CeEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEEccC---CeeEEEE-ecCCCcEEEEEEeecCCCcEEEEEeCC
Q psy4869 108 DVISTFTGHKSAITVIQYDPL-GHRLATGSKDTDIVLWDVVA---ECGLHRL-SGHKGVITDIRFMSQPGHHFVVSSAKD 182 (2435)
Q Consensus 108 ~~~~~l~gH~~~V~~l~f~p~-g~~laSgs~Dg~I~iWd~~~---~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~S~s~D 182 (2435)
..++.+.||++.|..++|+|- |..|||||.|+.||||+... ..+..++ .+|+..|++++|+| .+++|+++|.|
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp--~g~~La~aSFD 82 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP--HGRYLASASFD 82 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC--CCcEEEEeecc
Confidence 356788999999999999998 88999999999999999884 3344445 48999999999985 46799999999
Q ss_pred CcEEEEeccCC--ccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCC
Q psy4869 183 TFVKIWDADTG--DCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEP 260 (2435)
Q Consensus 183 g~I~iWd~~tg--~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (2435)
.++.||.-..+ +++.++.||..+|.+++|+++|++|++++.|+.|-+|.+.....
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE----------------------- 139 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE----------------------- 139 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-----------------------
Confidence 99999987655 57899999999999999999999999999999999998763210
Q ss_pred CceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeee
Q psy4869 261 DLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQK 340 (2435)
Q Consensus 261 ~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~ 340 (2435)
T Consensus 140 -------------------------------------------------------------------------------- 139 (312)
T KOG0645|consen 140 -------------------------------------------------------------------------------- 139 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecC--CceeeEEEeeCCCCCeeEEEEccCCC
Q psy4869 341 VQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY--GECENIGVMSGHTGAVMDLKFSTDGC 418 (2435)
Q Consensus 341 ~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~--~~~~~~~~l~~h~~~V~~l~~s~dg~ 418 (2435)
+.-..+|++|...|.-+.|+|...+|+++++|++|++|+-. +.-.....+.+|.+.|.+++|++.|.
T Consensus 140 -----------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 140 -----------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS 208 (312)
T ss_pred -----------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc
Confidence 01123678999999999999999999999999999999765 34556788999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc--ce----E--eecCcc
Q psy4869 419 HIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN--QA----V--SMNNTY 490 (2435)
Q Consensus 419 ~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~--~~----~--~~~~~~ 490 (2435)
+|++++.|++++||...+.- -..|+..+..+.|. ...|++++.|+.|++|.-...- +. . ...|..
T Consensus 209 rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 209 RLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred eEEEecCCcceEeeeeccCc----chhcccceEeeeec---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 99999999999999865321 12466778888887 3589999999999999765321 11 1 114677
Q ss_pred cEEEEEECCC-CCEEEEEecCCeEEEEECC
Q psy4869 491 QVTSVAFNDT-AECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 491 ~v~sv~~sp~-g~~l~sgs~dg~V~lwD~~ 519 (2435)
.|++++|+|. .++|++|+.||.|++|.+.
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 8999999995 7889999999999999864
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=315.33 Aligned_cols=274 Identities=23% Similarity=0.450 Sum_probs=233.0
Q ss_pred CCceEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEE
Q psy4869 23 NCNVVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKT 101 (2435)
Q Consensus 23 ~~~v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i 101 (2435)
-...+.++-+++|+..||.| .|-.|++|-+.+..... ++ ... . ...+=....|-.+.+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~-lk---~~~-------~----------l~~~d~~sad~~~~~ 435 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK-LK---DAS-------D----------LSNIDTESADVDVDM 435 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhcc-cc---chh-------h----------hccccccccchhhhh
Confidence 34445666779999999999 78899999998653221 11 000 0 011111223334667
Q ss_pred EECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeC
Q psy4869 102 FSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAK 181 (2435)
Q Consensus 102 ~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~ 181 (2435)
.|-+......++.||.++|..+.|+|+.++|+++|.|++||+|.+.+...+..++||..+|++|.|+| .+.+|+|+|.
T Consensus 436 ~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~ 513 (707)
T KOG0263|consen 436 LDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASH 513 (707)
T ss_pred ccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCC
Confidence 77777778888999999999999999999999999999999999999999999999999999999985 5789999999
Q ss_pred CCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCC
Q psy4869 182 DTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPD 261 (2435)
Q Consensus 182 Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (2435)
|++-++|.......++.+.+|...|.|+.|+|+..|+++||.|.+||+||+.++..
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~------------------------ 569 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS------------------------ 569 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE------------------------
Confidence 99999999999999999999999999999999999999999999999999875421
Q ss_pred ceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeee
Q psy4869 262 LTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKV 341 (2435)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~ 341 (2435)
T Consensus 570 -------------------------------------------------------------------------------- 569 (707)
T KOG0263|consen 570 -------------------------------------------------------------------------------- 569 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEE
Q psy4869 342 QKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIF 421 (2435)
Q Consensus 342 ~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~ 421 (2435)
+.++.||.++|.+++|+|+|.+|++|+.||.|.+||+.++ ..+..+.+|.+.|.+|.|+.||..|+
T Consensus 570 -------------VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLa 635 (707)
T KOG0263|consen 570 -------------VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLA 635 (707)
T ss_pred -------------EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEE
Confidence 1246799999999999999999999999999999999775 35567889999999999999999999
Q ss_pred EEeCCCeEEEEECCCC
Q psy4869 422 TCSTDQTLAVWDLEKG 437 (2435)
Q Consensus 422 s~s~Dg~I~vwd~~tg 437 (2435)
+++.|.+|++||+..-
T Consensus 636 sgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 636 SGGADNSVRLWDLTKV 651 (707)
T ss_pred ecCCCCeEEEEEchhh
Confidence 9999999999998653
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=278.01 Aligned_cols=290 Identities=23% Similarity=0.426 Sum_probs=262.4
Q ss_pred EEEEecCCCcEEEEEEeec-CCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEE
Q psy4869 152 LHRLSGHKGVITDIRFMSQ-PGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVW 230 (2435)
Q Consensus 152 ~~~l~gH~~~V~~v~~~~~-~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vw 230 (2435)
..+..||+.+|..++|+|- +++.+|+|++.|+.=.+-+.++|.-+.++.+|.+.||..++..+...-++++.|-+-++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 4567899999999999873 578899999999999999999999999999999999999999998899999999999999
Q ss_pred EcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccc
Q psy4869 231 NVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGID 310 (2435)
Q Consensus 231 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (2435)
|.-++..++.
T Consensus 87 ~a~tgdelhs---------------------------------------------------------------------- 96 (334)
T KOG0278|consen 87 DAVTGDELHS---------------------------------------------------------------------- 96 (334)
T ss_pred hhhhhhhhhh----------------------------------------------------------------------
Confidence 8654421110
Q ss_pred hhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4869 311 TTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWS 390 (2435)
Q Consensus 311 ~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd 390 (2435)
-.|..-|.+++|+.|.++|++|+.+..+||||
T Consensus 97 ------------------------------------------------f~hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 97 ------------------------------------------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred ------------------------------------------------hhhhheeeeEEecccchhhhccchHHHhhhhh
Confidence 14666788999999999999999999999999
Q ss_pred cCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC
Q psy4869 391 VYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470 (2435)
Q Consensus 391 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg 470 (2435)
++....+...+.+|.+.|+.+.|....+.|++.++|++||+||.++|..++.+.- ...|+++.+++++. +++..+.+
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~--ilTia~gs 205 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGR--ILTIAYGS 205 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCC--EEEEecCc
Confidence 9988778888999999999999999889999999999999999999999999874 45688999999884 44667778
Q ss_pred eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEcCCCCEEEEE
Q psy4869 471 TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL-RGHSDTVTGLSLSPDGSYILSN 549 (2435)
Q Consensus 471 ~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l-~~h~~~V~~i~~spdg~~las~ 549 (2435)
.|++||..+...+..+..+..|.+..++|+...+++|+.|+.++.||..+++.+..+ ++|.++|.||.|+|||...++|
T Consensus 206 sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred eeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeecc
Confidence 999999999999999999999999999999999999999999999999999999886 8999999999999999999999
Q ss_pred ECCCcEEEEEcCC
Q psy4869 550 AMDNTVRIWDIRP 562 (2435)
Q Consensus 550 s~Dg~I~lWdl~~ 562 (2435)
|.||+||||....
T Consensus 286 SEDGTirlWQt~~ 298 (334)
T KOG0278|consen 286 SEDGTIRLWQTTP 298 (334)
T ss_pred CCCceEEEEEecC
Confidence 9999999999874
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=312.09 Aligned_cols=247 Identities=27% Similarity=0.525 Sum_probs=225.4
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCc------------------------------eeeEEEeeCCCC
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE------------------------------CENIGVMSGHTG 406 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~------------------------------~~~~~~l~~h~~ 406 (2435)
.+..-...++|+.|++|+..||.|-.|..|++|.+... ......+.+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 44455677999999999999999999999999987521 012245789999
Q ss_pred CeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee
Q psy4869 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM 486 (2435)
Q Consensus 407 ~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~ 486 (2435)
+|....|+|+.++|++|+.|+++|+|.+.+...+..++||..+|+++.|.|.| .+||+++.|++.++|......+...+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999886 89999999999999999887777766
Q ss_pred -cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCC
Q psy4869 487 -NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP 565 (2435)
Q Consensus 487 -~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~ 565 (2435)
.|...|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.||+++|.+++|+|+|++|++|+.|+.|++||+.
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~---- 607 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA---- 607 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC----
Confidence 688899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 566 GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 566 ~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
.++.+..+.+|. +.+.++.|+.||..|++|+.|++|++||+..
T Consensus 608 ~~~~v~~l~~Ht----~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 608 NGSLVKQLKGHT----GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCcchhhhhccc----CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 567888888884 4789999999999999999999999999763
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-29 Score=322.60 Aligned_cols=291 Identities=35% Similarity=0.654 Sum_probs=261.8
Q ss_pred Eecc-cCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 357 LLEG-HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 357 ~l~g-H~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
.+.+ |...|.|++|+++|++|++++.|+.+++|+..... .....+.+|...|.+++|++|++++++++.|++|++||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 3444 48899999999999999999999999999985433 244556889999999999999999999999999999999
Q ss_pred -CCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCe
Q psy4869 435 -EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDND 512 (2435)
Q Consensus 435 -~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~ 512 (2435)
..+..++.+++|...|++++|+|.+ .++++|+.|++|+|||++++++...+ .|...|++++|++++++|++++.||.
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 5568999999999999999999999 89999999999999999999988888 57889999999999999999999999
Q ss_pred EEEEECCCCc--EEEEEecCCCC--EEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEE
Q psy4869 513 IKMWDLRTNS--VVQKLRGHSDT--VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588 (2435)
Q Consensus 513 V~lwD~~s~~--~v~~l~~h~~~--V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~ 588 (2435)
|++||+.++. ++..+.++... ++++.|+|++.+|+++..|+.+++||++ ...++..+.+|.... ..+.+..
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~----~~~~~~~~~~~~~~~-~~~~~~~ 386 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR----SGKSVGTYTGHSNLV-RCIFSPT 386 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc----CCcceeeecccCCcc-eeEeccc
Confidence 9999999999 56777776665 9999999999999999999999999998 467788888886541 3455566
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCCcEEEEecCC-CCCeeEEEEcCCCCEEEEEE--CCCcEEEecCC
Q psy4869 589 WSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGH-NGSVNDVQFHPKEPIIMSAS--SDKTIYLGESP 653 (2435)
Q Consensus 589 ~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h-~~~V~~l~fspd~~~Lasgs--~Dg~I~vWd~~ 653 (2435)
.+++|+++++|+.|+.|++||..++..+..+.+| ...|..+.|+|..+++++++ .|+.+++|..+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 6889999999999999999999999999999999 89999999999999999999 78999999875
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=279.68 Aligned_cols=293 Identities=26% Similarity=0.424 Sum_probs=264.0
Q ss_pred CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q psy4869 1071 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150 (2435)
Q Consensus 1071 ~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~i 1150 (2435)
.+++.+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.+|+...++.+|-..|..+++++...++++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF 1230 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lv 1230 (2435)
||+...+.+... .+|-..|+|++.+|.-+.|++|+.|..+|+||+++...+..+.+|..+|..+.+.|-+.+++
T Consensus 220 wDLe~nkvIR~Y------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 220 WDLEYNKVIRHY------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EechhhhhHHHh------ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 999988766655 59999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1231 sgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+|+.|++|++||++.++....+.
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt--------------------------------------------------------- 316 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLT--------------------------------------------------------- 316 (460)
T ss_pred EecCCceEEEeeeccCceeEeee---------------------------------------------------------
Confidence 99999999999999877655432
Q ss_pred ccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~ 1390 (2435)
.++..+++++..|....||.++.|. ++-|++..+.++..+.+|..-+.+++...|| ++++|+++|.|.+||.++|-.
T Consensus 317 -~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 317 -HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred -cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 2345789999999999999887664 7889999999999999999999999998776 778999999999999999876
Q ss_pred EEEec--------ccccceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1391 HKSLL--------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1391 ~~~~~--------~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
...++ .....|.+.+|+..+.+|+||..|..|++|+-++
T Consensus 394 yQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 394 YQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 55442 1234699999999999999999999999999885
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=296.57 Aligned_cols=286 Identities=33% Similarity=0.627 Sum_probs=257.7
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
..+++|.++|++++|+|++++|++++.||.|++|++.... ....+..|...+..+.|++++++|++++.|+.|++||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 3567999999999999999999999999999999987643 445677899999999999999999999999999999999
Q ss_pred CCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 436 tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
+++.+..+..|...+.++.|.+++ .++++++.|+.+++||+++++....+. +...+.+++|+|++.++++++.+|.|+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 988889999999899999999884 577777889999999999877777665 677899999999999999988899999
Q ss_pred EEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC
Q psy4869 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594 (2435)
Q Consensus 515 lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~ 594 (2435)
+||+++++.+..+..|...|.++.|+|+++.+++++.|+.|++||++. .+.+..+..|. ..+..+.|++++.
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~----~~i~~~~~~~~~~ 232 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST----GKCLGTLRGHE----NGVNSVAFSPDGY 232 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC----CceecchhhcC----CceEEEEEcCCCc
Confidence 999999999999999999999999999999999999999999999984 44555554443 3788999999999
Q ss_pred EEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 595 YVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 595 ~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
++++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|+
T Consensus 233 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999899999999999999999999999999999999999999999999999996
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=265.28 Aligned_cols=284 Identities=26% Similarity=0.439 Sum_probs=239.1
Q ss_pred eeEecccCCcEEEEEECCC-CCEEEEEeCCCeEEEEecCCc--eeeEEE-eeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 355 IMLLEGHGGEIFCSKYHPD-GQYIASSGYDRQIFIWSVYGE--CENIGV-MSGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~--~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
...+.||.+.|..++|+|- |..||+++.|..||||+.... ...... -.+|+..|+.++|+|.|++|++++.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 3568899999999999998 899999999999999998742 111222 257999999999999999999999999999
Q ss_pred EEECCCC--ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc---ceEee-cCcccEEEEEECCCCCEE
Q psy4869 431 VWDLEKG--QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN---QAVSM-NNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 431 vwd~~tg--~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~---~~~~~-~~~~~v~sv~~sp~g~~l 504 (2435)
||.-..+ +++..+.||...|.+++|+++| .+||+++.|..|-||.+.... +...+ .|...|..+.|+|...+|
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 9987654 6788999999999999999998 678999999999999987543 33334 578889999999999999
Q ss_pred EEEecCCeEEEEECC---CCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccc
Q psy4869 505 LTGGIDNDIKMWDLR---TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE 581 (2435)
Q Consensus 505 ~sgs~dg~V~lwD~~---s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~ 581 (2435)
+++++|.+|++|+-. ..+++.++.+|.+.|.+++|++.|.+|++++.|++++||-+... +.. ...
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---------~~~---~~s 233 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---------LSG---MHS 233 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---------cch---hcc
Confidence 999999999999766 56789999999999999999999999999999999999996521 111 112
Q ss_pred cCeEEEEEcCCCCEEEEecCCCeEEEEECCCC------cEEE-EecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEecCC
Q psy4869 582 KNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR------RIAY-KLPGHNGSVNDVQFHPK-EPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 582 ~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~------~~~~-~l~~h~~~V~~l~fspd-~~~Lasgs~Dg~I~vWd~~ 653 (2435)
..++.+.|. ...|++++.|+.|++|..... +++. .-..|...|+++.|.|. ..+|++|++||.|++|.+.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 467888998 567999999999999976532 2222 23469999999999995 6699999999999999874
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-26 Score=275.24 Aligned_cols=493 Identities=15% Similarity=0.187 Sum_probs=359.3
Q ss_pred eCCCCceEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCe
Q psy4869 20 ASPNCNVVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGS 98 (2435)
Q Consensus 20 ~~~~~~v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~ 98 (2435)
.=-|++++++|+-..+++ ||.+ .+|.|.||++...=... ...-.+....|..++|. ++.+|.+.+.+|.
T Consensus 22 d~~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~--------~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~ 91 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE--------PVIHGPEDRSIESLAWA-EGGRLFSSGLSGS 91 (691)
T ss_pred eeeccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee--------EEEecCCCCceeeEEEc-cCCeEEeecCCce
Confidence 333667778877555544 8888 99999999987632111 11122455668899999 5669999999999
Q ss_pred EEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeE--EEEecCCCcEEEEEEeecCCCcEE
Q psy4869 99 LKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL--HRLSGHKGVITDIRFMSQPGHHFV 176 (2435)
Q Consensus 99 i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~--~~l~gH~~~V~~v~~~~~~~~~~l 176 (2435)
|.-||+.++++...+....+.|++++.+|.+..++.|++||.+...+...+... ..|-..+++|.+|.|+| .+..|
T Consensus 92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~--~~~~i 169 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP--TGTKI 169 (691)
T ss_pred EEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC--CccEE
Confidence 999999999999999999999999999999999999999997777777776643 33455678999999975 45569
Q ss_pred EEEeCCCcEEEEeccCCcccc-----cc---ccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhh
Q psy4869 177 VSSAKDTFVKIWDADTGDCFK-----TM---AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSE 248 (2435)
Q Consensus 177 ~S~s~Dg~I~iWd~~tg~~~~-----~~---~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~ 248 (2435)
++|+.||.|++||..+|..++ .. ++..--||+|.+. ....|++|..-|+|.+||...+..+
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLi---------- 238 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLI---------- 238 (691)
T ss_pred EecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchh----------
Confidence 999999999999999998766 22 1233457888888 4558899999999999997643110
Q ss_pred hcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEE
Q psy4869 249 QLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVT 328 (2435)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~ 328 (2435)
T Consensus 239 -------------------------------------------------------------------------------- 238 (691)
T KOG2048|consen 239 -------------------------------------------------------------------------------- 238 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCcee---eEEEeeCCC
Q psy4869 329 VYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE---NIGVMSGHT 405 (2435)
Q Consensus 329 i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~---~~~~l~~h~ 405 (2435)
..+..|.+.|.|++..+++++++++|.|++|..+...+... .......|.
T Consensus 239 ---------------------------qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~ 291 (691)
T KOG2048|consen 239 ---------------------------QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHA 291 (691)
T ss_pred ---------------------------hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCc
Confidence 01345788899999999999999999999999998776533 334456799
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccC---ccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHS---TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ 482 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~---~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~ 482 (2435)
..|++++..++ .|++|+.|..+.+--.+.-+ +..|. .........-.....+..--.+..+.+|.+.+...
T Consensus 292 hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~----~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~ 365 (691)
T KOG2048|consen 292 HDVRSMAVIEN--ALISGGRDFTLAICSSREFK----NMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVIL 365 (691)
T ss_pred ccceeeeeecc--eEEecceeeEEEEccccccC----chhhhccccccccceeecCccceEEEEeccccccceeccCccc
Confidence 99999999877 89999999998887654311 11221 11111111111112333334456677777654411
Q ss_pred --------eEe--ecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE--EEE---ecCCCCEEEEEEcCCCCEEE
Q psy4869 483 --------AVS--MNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVV--QKL---RGHSDTVTGLSLSPDGSYIL 547 (2435)
Q Consensus 483 --------~~~--~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v--~~l---~~h~~~V~~i~~spdg~~la 547 (2435)
+.. ......|.|.+.+|+|++|+.+.- ..++||.+.-...+ ... ..-.-....+.|+-|++.++
T Consensus 366 ~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~ 444 (691)
T KOG2048|consen 366 QGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLF 444 (691)
T ss_pred ccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEE
Confidence 111 245667999999999999998763 45677776642222 222 22334677889999999888
Q ss_pred EEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCe
Q psy4869 548 SNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSV 626 (2435)
Q Consensus 548 s~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V 626 (2435)
.++ .+..+.++++... ..+.+..+... .-...|..+..+++|+||++.+.+|.|.+|++++++.......-+..|
T Consensus 445 ~~s~~~~~le~~el~~p--s~kel~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~v 520 (691)
T KOG2048|consen 445 LVSKNIFSLEEFELETP--SFKELKSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDV 520 (691)
T ss_pred EEecccceeEEEEecCc--chhhhhccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcce
Confidence 877 7788888887642 33333332222 223578999999999999999999999999999987655544556889
Q ss_pred eEEEEcC-CCCEEEEEECCCcEEEecCC
Q psy4869 627 NDVQFHP-KEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 627 ~~l~fsp-d~~~Lasgs~Dg~I~vWd~~ 653 (2435)
++++|+| +.+.|+.+..|+.++-+|++
T Consensus 521 Ta~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 521 TAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred eeeeccccccCcEEEEecCCeEEEEecc
Confidence 9999995 66799999999999999985
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-30 Score=285.05 Aligned_cols=277 Identities=26% Similarity=0.527 Sum_probs=239.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc
Q psy4869 116 HKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC 195 (2435)
Q Consensus 116 H~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~ 195 (2435)
....|.|++++ ...+++|..|.+|+|||..+..++..|.||+|.|.|+.|. ..+++|||.|.+|++||+++|++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc----ceEEEecCCCceEEEEeccCCch
Confidence 45789999996 5689999999999999999999999999999999999993 45899999999999999999999
Q ss_pred ccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeeccc
Q psy4869 196 FKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINEL 275 (2435)
Q Consensus 196 ~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 275 (2435)
+.++-+|...|..+.|+ +.+++++|.|.++.+||+.....+
T Consensus 270 l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i------------------------------------- 310 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI------------------------------------- 310 (499)
T ss_pred hhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH-------------------------------------
Confidence 99999999999999986 569999999999999998753210
Q ss_pred ccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccce
Q psy4869 276 KNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPI 355 (2435)
Q Consensus 276 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~ 355 (2435)
...
T Consensus 311 -----------------------------------------------------------------------------t~r 313 (499)
T KOG0281|consen 311 -----------------------------------------------------------------------------TLR 313 (499)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 011
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
.++.||...|+.+.|+ .+||++++.|.+|++|++.+ ...+..+.+|...|-++.+ .++++++|+.|.+|++||++
T Consensus 314 rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred HHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc-eeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecc
Confidence 3577999999999996 46999999999999999865 3567788999999999987 57899999999999999999
Q ss_pred CCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcce---------Ee-ecCcccEEEEEECCCCCEEE
Q psy4869 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQA---------VS-MNNTYQVTSVAFNDTAECVL 505 (2435)
Q Consensus 436 tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~---------~~-~~~~~~v~sv~~sp~g~~l~ 505 (2435)
.|.+++.++||..-|.++.|.. ..+++|+.||+|++||+..+... .. ..|.+.|..+.|. ...++
T Consensus 389 ~G~cLRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIv 463 (499)
T KOG0281|consen 389 CGACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQII 463 (499)
T ss_pred ccHHHHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEE
Confidence 9999999999999999999854 46999999999999998765432 11 2577789999984 46788
Q ss_pred EEecCCeEEEEECCCCcEE
Q psy4869 506 TGGIDNDIKMWDLRTNSVV 524 (2435)
Q Consensus 506 sgs~dg~V~lwD~~s~~~v 524 (2435)
+.+.|.+|.|||..++-+-
T Consensus 464 sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eccCCCeEEEEEcCCCCcc
Confidence 9999999999999877543
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=287.84 Aligned_cols=295 Identities=23% Similarity=0.362 Sum_probs=245.1
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeE---EEe-eCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENI---GVM-SGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~---~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
.+.+++|...|.++++.|.|..|++|+.|..|++||+.+..... ..+ ......|+.++|++.|..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 46789999999999999999999999999999999987533222 222 23467899999999999999999999999
Q ss_pred EEECCCCceEEE------------EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc-eEeec------Cccc
Q psy4869 431 VWDLEKGQRIKK------------MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ-AVSMN------NTYQ 491 (2435)
Q Consensus 431 vwd~~tg~~v~~------------l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~-~~~~~------~~~~ 491 (2435)
|+|....+.+.. -+||...+++.+|+|.....|++++.||++|+||+...+. ...+. ..-.
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 999754333322 2589999999999999999999999999999999875443 22222 3446
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEECCCCcE--E-EEEecCCC--CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 492 VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV--V-QKLRGHSD--TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 492 v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~--v-~~l~~h~~--~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
++.++|+++|+.||+|..||.|.+||.++... . ..-.+|.. .|+||.|++||++|++-+.|+++++||||.+
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~--- 396 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF--- 396 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc---
Confidence 89999999999999999999999999866432 2 22357877 9999999999999999999999999999963
Q ss_pred CceEEEEeCcccccccCeEEEEEcCCCCEEEEecC------CCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEE
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA------DKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~------Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Las 640 (2435)
.+++....+-... .....|+|||+.++|++|.. -|.+.+||..+...++.+.-....|..+.|||.-++|+.
T Consensus 397 kkpL~~~tgL~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 397 KKPLNVRTGLPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA 474 (641)
T ss_pred ccchhhhcCCCcc--CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence 4666666654332 25578999999999999864 578999999999999999888889999999999999999
Q ss_pred EECCCcEEEecCCC
Q psy4869 641 ASSDKTIYLGESPL 654 (2435)
Q Consensus 641 gs~Dg~I~vWd~~~ 654 (2435)
|+.||+++++.-+.
T Consensus 475 gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 475 GSGDGTAHVYYDPN 488 (641)
T ss_pred ecCCCceEEEECcc
Confidence 99999999886653
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=261.74 Aligned_cols=284 Identities=27% Similarity=0.481 Sum_probs=249.3
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
..++.+|.++|.++.|+-+|+|.++++.|.+|++|+...+ ..+..+.+|...|.+++.+.|+..|++|+.|+.|.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-ceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 3578899999999999999999999999999999997654 356789999999999999999999999999999999999
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC--CcceEee-cCcccEEEEEECCCCCEEEEEecCC
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK--KNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDN 511 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~--~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg 511 (2435)
++|+.++++.+|...|+.+.|.... ..+++|+.|.++++||.++ .+++..+ .....|.++..+ +..|++|+.||
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence 9999999999999999999998775 7889999999999999875 4555555 456778888875 56899999999
Q ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC
Q psy4869 512 DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV 591 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp 591 (2435)
+++.||++.|++...+-+| +|++++|++||+..+.++.|+++++.|-. .++.++.+.||.+. ..-..|++..
T Consensus 166 tvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~----tGklL~sYkGhkn~--eykldc~l~q 237 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKE----TGKLLKSYKGHKNM--EYKLDCCLNQ 237 (307)
T ss_pred cEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccc----hhHHHHHhcccccc--eeeeeeeecc
Confidence 9999999999887766654 79999999999999999999999999987 57888999999753 2346788888
Q ss_pred CCCEEEEecCCCeEEEEECCCCcEEEEecCCCCC-eeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 592 SGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGS-VNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 592 dg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~-V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
...++++||.||.|++||+.....+..+..|... |.++.+||....|+++...+ +.+|.
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence 8899999999999999999999999999888887 89999999988887776554 44443
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-29 Score=283.37 Aligned_cols=292 Identities=24% Similarity=0.378 Sum_probs=250.5
Q ss_pred EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCC---ceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q psy4869 1074 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG---DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150 (2435)
Q Consensus 1074 ~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~---~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~i 1150 (2435)
....+..|...|+-+.|+++|++||+++.|.+..+|++... +..+++.+|..+|..+.|+||.++|++|+.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34457789999999999999999999999999999998654 347788899999999999999999999999999999
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccC-CCEEEEEEeeCCCEE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE-DSVTGVTFVPKTHYF 1229 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~-~~V~~i~~spd~~~l 1229 (2435)
||+.++....... .++...+.+++|.|||..+++|+.|+.+..||++ |..+..+.+-. ..|.+++..+||+.+
T Consensus 296 wDv~tgd~~~~y~-----~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 296 WDVDTGDLRHLYP-----SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred ccCCcchhhhhcc-----cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEE
Confidence 9999998766653 2356789999999999999999999999999998 44455554433 469999999999999
Q ss_pred EEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecc
Q psy4869 1230 FTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1309 (2435)
Q Consensus 1230 vsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1309 (2435)
+..+.|..|++++........
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~----------------------------------------------------------- 390 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRG----------------------------------------------------------- 390 (519)
T ss_pred EEEecccceeeechhhhhhhc-----------------------------------------------------------
Confidence 999999888888765432110
Q ss_pred cccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCC--eEEEEEec-CCCEEEEEeCCCcEEEEeCC
Q psy4869 1310 TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP--VLSLDMSY-DSTLIATGSGDRTVKVWGLD 1386 (2435)
Q Consensus 1310 ~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~--V~~la~sp-dg~~L~sGg~Dg~V~iwdl~ 1386 (2435)
....+..|.+++.|.||+++.+.-.+..+++||++..+.+..+.||+.. +..-+|.- +.++|++|++|+.|+||+..
T Consensus 391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 1123567899999999999999999999999999999999999999876 33445543 55899999999999999999
Q ss_pred CCceEEEecccccceEEEEEeeCC-CEEEEEeCCCcEEEEECCCc
Q psy4869 1387 YGDCHKSLLAHEDSVTGVTFVPKT-HYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1387 ~gk~~~~~~~h~~~V~~laf~P~~-~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
+|+++..+.+|...|++|+|+|.. ..|||+|+||+|+||.+...
T Consensus 471 sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 471 SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999999999976 78999999999999998753
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=283.07 Aligned_cols=273 Identities=24% Similarity=0.500 Sum_probs=233.1
Q ss_pred CCceEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEE
Q psy4869 23 NCNVVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKT 101 (2435)
Q Consensus 23 ~~~v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i 101 (2435)
.-+|-++++ |...+++| .|+.|+|||.+..+... .+.||...|.|+.+ |.+.+++|+.|..|++
T Consensus 197 skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~----------~L~GHtGSVLCLqy--d~rviisGSSDsTvrv 261 (499)
T KOG0281|consen 197 SKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLK----------ILTGHTGSVLCLQY--DERVIVSGSSDSTVRV 261 (499)
T ss_pred CCceEEEEe---cchhhhcccccCceEEeccccHHHHH----------hhhcCCCcEEeeec--cceEEEecCCCceEEE
Confidence 447888887 56678888 89999999987665443 46688888877776 4568999999999999
Q ss_pred EECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCe---eEEEEecCCCcEEEEEEeecCCCcEEEE
Q psy4869 102 FSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAEC---GLHRLSGHKGVITDIRFMSQPGHHFVVS 178 (2435)
Q Consensus 102 ~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~---~~~~l~gH~~~V~~v~~~~~~~~~~l~S 178 (2435)
||+.+++++.++.+|...|..+.|+ ..+++|+|.|.+|++||+.... +.++|.||...|..|.|. ..+++|
T Consensus 262 WDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd----~kyIVs 335 (499)
T KOG0281|consen 262 WDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD----DKYIVS 335 (499)
T ss_pred EeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc----cceEEE
Confidence 9999999999999999999999998 5799999999999999998765 346789999999999994 358999
Q ss_pred EeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccC
Q psy4869 179 SAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSED 258 (2435)
Q Consensus 179 ~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (2435)
+|.|.+|++|++.++++++++.+|...|-|+.+ .++.+++||.|.+|++||++.+.++
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL-------------------- 393 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL-------------------- 393 (499)
T ss_pred ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH--------------------
Confidence 999999999999999999999999999988776 5889999999999999998854221
Q ss_pred CCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceee
Q psy4869 259 EPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKV 338 (2435)
Q Consensus 259 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~ 338 (2435)
T Consensus 394 -------------------------------------------------------------------------------- 393 (499)
T KOG0281|consen 394 -------------------------------------------------------------------------------- 393 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceee--------EEEeeCCCCCeeE
Q psy4869 339 QKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECEN--------IGVMSGHTGAVMD 410 (2435)
Q Consensus 339 ~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~--------~~~l~~h~~~V~~ 410 (2435)
.+++||..-|.|+.| |.+.|++|++||+|+|||+.....+ +..+..|++.|..
T Consensus 394 -----------------RvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 394 -----------------RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred -----------------HHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE
Confidence 146789999999999 4688999999999999998754332 2345679999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCce
Q psy4869 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQR 439 (2435)
Q Consensus 411 l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~ 439 (2435)
+.| |...|++++.|.+|.|||...+-+
T Consensus 455 LQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 455 LQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred Eee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 999 456899999999999999877644
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=290.47 Aligned_cols=287 Identities=35% Similarity=0.568 Sum_probs=257.8
Q ss_pred EEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1076 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155 (2435)
Q Consensus 1076 ~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~ 1155 (2435)
..+.+|..+|.+++|+|++++|++++.||.|++|++..++....+..|...+..+.|.++++.+++++.|+.|++||+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 35668999999999999999999999999999999999988888889999999999999999999999999999999998
Q ss_pred cceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECC
Q psy4869 1156 FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD 1235 (2435)
Q Consensus 1156 ~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~D 1235 (2435)
.+....+ ..|...+.++.|++++.++++++.|+.|++||+++++....+..|...|.++.|+|++.++++++.|
T Consensus 83 ~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 83 GECVRTL------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred ccceEEE------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 6554444 3678899999999998888888889999999999888888888899999999999998888888889
Q ss_pred CcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccc
Q psy4869 1236 GRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1315 (2435)
Q Consensus 1236 g~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1315 (2435)
+.|++||++..+.+..+. ....
T Consensus 157 ~~i~i~d~~~~~~~~~~~----------------------------------------------------------~~~~ 178 (289)
T cd00200 157 GTIKLWDLRTGKCVATLT----------------------------------------------------------GHTG 178 (289)
T ss_pred CcEEEEEccccccceeEe----------------------------------------------------------cCcc
Confidence 999999987544322211 1134
Q ss_pred cEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEec
Q psy4869 1316 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1395 (2435)
Q Consensus 1316 ~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~ 1395 (2435)
.+.++.|+|+++.+++++.+|.+++||+..++.+..+..|...+.+++|+|++.++++++.|+.|++|++..++....+.
T Consensus 179 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 68899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred ccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1396 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1396 ~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
.|...|.+++|+|++.+|++++.||.|++||
T Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999999999999996
|
|
| >PTZ00462 Serine-repeat antigen protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-30 Score=334.36 Aligned_cols=187 Identities=19% Similarity=0.305 Sum_probs=133.5
Q ss_pred CCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCcc
Q psy4869 2184 WPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQ 2263 (2435)
Q Consensus 2184 ~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q 2263 (2435)
|++|.. ..||||||.||+|| |||+++++|++++|+.+..+. ||+|
T Consensus 538 ~~sC~s-~i~VKDQG~CGSCW--------------------------------AFASaaaLES~~cIkgg~~v~--LSeQ 582 (1004)
T PTZ00462 538 ENNCIS-KIQIEDQGNCAISW--------------------------------IFASKYHLETIKCMKGYEPHA--ISAL 582 (1004)
T ss_pred CCCCCC-CCCcccCCcchHHH--------------------------------HHHHHHHHHHHHHHhcCCCcc--cCHH
Confidence 677865 68999999999999 999999999999999877665 9999
Q ss_pred ceecccCCCCCCCCCCCCCCCCCCChh-hHHHHHHHcC-ccCCCcccCCC--CCccccc---------------------
Q psy4869 2264 HLICSCTNCTRMHTKTPMSMCMGGDSA-AAWMYWINAG-LVDGGDYGTHD--VSMGRYI--------------------- 2318 (2435)
Q Consensus 2264 ~l~~~~~~c~~~~~~~~~~gC~gg~~~-~a~~~~~~~G-i~~~~~y~~~~--~~~~~~~--------------------- 2318 (2435)
+|+ ||+.. +++.||.||+.. .+++|++++| ++.|.+|||.. ....|..
T Consensus 583 qLV----DCs~~---~gn~GC~GG~~~~efl~yI~e~GgLptESdYPYt~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~ 655 (1004)
T PTZ00462 583 YIA----NCSKG---EHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLYNYTKVGEDCPDEEDHWMNLLDHGKILNHNKKE 655 (1004)
T ss_pred HHH----hcccc---cCCCCCCCCCcHHHHHHHHHHcCCCcccccCCCccCCCCCCCCCCcccccccccccccccccccc
Confidence 999 88742 245799999755 5568998875 78899999953 1111100
Q ss_pred -------------------------cCcccceeecccCCcccccceeeEEEEe-cCC-----CcCcccceEEEEEEeccC
Q psy4869 2319 -------------------------EGIGHAASVMGSSNPEVNNFEKVIRLYS-CEG-----SINPRYIHSVKIIGWGKS 2367 (2435)
Q Consensus 2319 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~Hav~iVGyg~~ 2367 (2435)
..++..+...||+.+.++.. .++.|. .+. +.....+|||+|||||.+
T Consensus 656 ~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~ 733 (1004)
T PTZ00462 656 PNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNY 733 (1004)
T ss_pred cceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--hHHhhhcCCccccCCCCCCcCCceEEEEEeccc
Confidence 00111122335555544331 122332 121 111246799999999974
Q ss_pred ----CCCcceEEEEccCCCCcCCCceEEEEe-eCcccccccceeEEEeecCc
Q psy4869 2368 ----SQNEPYWLCTNSYNQGWGEQGLFKIRR-GVNMCSIEDSVMAGEAKLEG 2414 (2435)
Q Consensus 2368 ----~~g~~yWiikNSWG~~WG~~Gy~~i~r-~~n~cgi~~~~~~~~~~~~~ 2414 (2435)
..|++|||||||||+.|||+|||||+| |.|+|||.....+++=.|+-
T Consensus 734 in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~fn~d~ 785 (1004)
T PTZ00462 734 INDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVIFNIDL 785 (1004)
T ss_pred ccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeeeEeecc
Confidence 236799999999999999999999998 78999998877766555543
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=293.63 Aligned_cols=224 Identities=21% Similarity=0.176 Sum_probs=167.3
Q ss_pred eCCCCEEEEEeCCCcEEEEEccCCceeeEee----ccCCCEEEEEEee-CCCEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1181 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLL----AHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1181 s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~----~h~~~V~~i~~sp-d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
.+.+-.+.+|-.-|.|.+.|....+..+.++ -.+..|++|+|.| +...++++-++|.+.+||....... ..+
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~---t~p 258 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA---TAP 258 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC---CCC
Confidence 3467788888889999999987644333232 2346899999999 5667777889999999987321110 000
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD 1335 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d 1335 (2435)
.........++... .|.-. ...+|+..+... +..|..++|+|||++||+.+.|
T Consensus 259 ~~~~~k~~~~f~i~-------t~ksk-------------------~~rNPv~~w~~~-~g~in~f~FS~DG~~LA~VSqD 311 (636)
T KOG2394|consen 259 SYQALKDGDQFAIL-------TSKSK-------------------KTRNPVARWHIG-EGSINEFAFSPDGKYLATVSQD 311 (636)
T ss_pred cccccCCCCeeEEe-------eeecc-------------------ccCCccceeEec-cccccceeEcCCCceEEEEecC
Confidence 11111111222211 11100 000111111111 3488999999999999999999
Q ss_pred CeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEee-------
Q psy4869 1336 TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP------- 1408 (2435)
Q Consensus 1336 G~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P------- 1408 (2435)
|.++|||+++.+++..++.+.+...|++|||||+||++||+|..|.||.+.+++++++.++|.+||+.|+|+|
T Consensus 312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee 391 (636)
T KOG2394|consen 312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEE 391 (636)
T ss_pred ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred -----------------------------------------CCCEEEEEeCCCcEEEEECCCceeEE
Q psy4869 1409 -----------------------------------------KTHYFFTTSKDGRVKQWDADNFERIV 1434 (2435)
Q Consensus 1409 -----------------------------------------~~~~laSgg~Dg~V~lWd~~~~~~l~ 1434 (2435)
..++|.|+|.|.+|+|||+.+.....
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 392 WNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 13589999999999999999755544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=330.18 Aligned_cols=289 Identities=21% Similarity=0.355 Sum_probs=247.0
Q ss_pred ecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-------eeEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCCeE
Q psy4869 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-------ENIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQTL 429 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-------~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I 429 (2435)
+.+|.+.|.+++|+|+|++||+|+.|+.|+|||..... .....+ .+...|.+++|++ ++.+|++++.||.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 34599999999999999999999999999999975311 011222 3457899999987 57899999999999
Q ss_pred EEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEEC-CCCCEEEEEe
Q psy4869 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFN-DTAECVLTGG 508 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~s-p~g~~l~sgs 508 (2435)
++||+.+++.+..+.+|...|.+++|++.++.+|++|+.|+.|++||++++..+..+.....+.++.|+ ++|.+|++|+
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 999999999999999999999999999877788999999999999999999888888777789999995 5799999999
Q ss_pred cCCeEEEEECCCCc-EEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC--CCCceEEEEeCcccccccCeE
Q psy4869 509 IDNDIKMWDLRTNS-VVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV--PGERCVKVMSGHQHNFEKNLL 585 (2435)
Q Consensus 509 ~dg~V~lwD~~s~~-~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~--~~~~~v~~~~~h~~~~~~~i~ 585 (2435)
.||.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.|++|+|||++... ....++..+.+|. ..+.
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~----~~i~ 712 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT----NVKN 712 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC----CCee
Confidence 99999999999875 577888999999999997 78899999999999999997431 1235677788875 3567
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEe-------------cCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 586 RCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKL-------------PGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 586 ~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l-------------~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
.+.|++++++|++|+.|+.|++|+...+.++..+ ..|...|.+++|+|++..|++|+.||.|++|++
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 8999999999999999999999998766543222 235567999999999999999999999999986
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=270.34 Aligned_cols=318 Identities=23% Similarity=0.394 Sum_probs=253.0
Q ss_pred EECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeec-CCCcEEEEEe
Q psy4869 102 FSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQ-PGHHFVVSSA 180 (2435)
Q Consensus 102 ~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~-~~~~~l~S~s 180 (2435)
--+...++.+.|. |.+.|.++... +..|+||++||.++|||. .++..+.+.||.++|.+++|... +....|+++|
T Consensus 91 ~~~~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 91 EAITAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred EecCCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence 3344455666655 99999999987 789999999999999995 56678889999999999999643 2334799999
Q ss_pred CCCcEEEEeccCCccc----cccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecc
Q psy4869 181 KDTFVKIWDADTGDCF----KTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLS 256 (2435)
Q Consensus 181 ~Dg~I~iWd~~tg~~~----~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 256 (2435)
.|.++++|.++.++.. +...||...|.++...++|.++++||.|.+|++|+.... .....+.
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~------------- 232 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD-EEDELES------------- 232 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCC-ccccccc-------------
Confidence 9999999999988753 344699999999999999999999999999999994321 1000000
Q ss_pred cCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccce
Q psy4869 257 EDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNY 336 (2435)
Q Consensus 257 ~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~ 336 (2435)
. .. .+++..
T Consensus 233 ----------~-----------s~--------------------------------------------------~rrk~~ 241 (423)
T KOG0313|consen 233 ----------S-----------SN--------------------------------------------------RRRKKQ 241 (423)
T ss_pred ----------c-----------ch--------------------------------------------------hhhhhh
Confidence 0 00 000000
Q ss_pred eeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccC
Q psy4869 337 KVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD 416 (2435)
Q Consensus 337 ~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~d 416 (2435)
+. ........|+..+.||..+|.++.|++ ...+++++.|.+|+.||+..+..... ..-...++++..++.
T Consensus 242 ~~-------~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~--~~~~ksl~~i~~~~~ 311 (423)
T KOG0313|consen 242 KR-------EKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKST--LTTNKSLNCISYSPL 311 (423)
T ss_pred hh-------hhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceee--eecCcceeEeecccc
Confidence 00 001112358889999999999999998 77899999999999999986543222 223578899999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCc---eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc-ceEee-cCccc
Q psy4869 417 GCHIFTCSTDQTLAVWDLEKGQ---RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN-QAVSM-NNTYQ 491 (2435)
Q Consensus 417 g~~L~s~s~Dg~I~vwd~~tg~---~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~-~~~~~-~~~~~ 491 (2435)
.++|++|+.|..+++||.+++. ....+.+|...|.++.|+|.+.++|++|+.|+++++||+|..+ ++..+ .|...
T Consensus 312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 312 SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence 9999999999999999998763 4567889999999999999999999999999999999999877 77776 68889
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 492 VTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 492 v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
|-++.|+ ++.+|++|+.|.+|+|+...
T Consensus 392 vl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 392 VLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999997 46689999999999998754
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=264.67 Aligned_cols=287 Identities=24% Similarity=0.405 Sum_probs=240.9
Q ss_pred CCCccceEEEeecCCCCeEEEEEc-------CCeEEEEECCCCCeEEEecC--CCCCEEEEEEcCCC-CEEEEEeCCCCE
Q psy4869 72 PGEKHEVCQLSPNHDSSQLAVAYT-------NGSLKTFSLDTTDVISTFTG--HKSAITVIQYDPLG-HRLATGSKDTDI 141 (2435)
Q Consensus 72 ~g~~~~v~~~~~~~d~~~lav~~~-------~G~i~i~d~~~~~~~~~l~g--H~~~V~~l~f~p~g-~~laSgs~Dg~I 141 (2435)
+|....-.+.+|..++ +||+|.. +|++.|.++...+-++++.. -.+.+..++|++.. +.+++++.||++
T Consensus 7 pgf~GysvqfSPf~~n-rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 7 PGFHGYSVQFSPFVEN-RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred CCcccceeEecccccc-hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceE
Confidence 3333444456666665 5555543 88999999987766666554 46889999999964 789999999999
Q ss_pred EEEEccC-CeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeC-CCeEE
Q psy4869 142 VLWDVVA-ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRE-DSYLI 219 (2435)
Q Consensus 142 ~iWd~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~-~~~l~ 219 (2435)
+|||... ..+++.++.|+..|.++.|++... ..++++|.|++||+||...++.+.++.+|...|+...|+|. .+.++
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r-~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR-RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheEEeccccccc-eeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEE
Confidence 9999654 448899999999999999987554 45666699999999999999999999999999999999995 67899
Q ss_pred EeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccc
Q psy4869 220 SGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSIT 299 (2435)
Q Consensus 220 s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 299 (2435)
++|.|+++++||++....
T Consensus 165 s~Sgd~~l~lwdvr~~gk-------------------------------------------------------------- 182 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGK-------------------------------------------------------------- 182 (311)
T ss_pred EccCCceEEEEEecCCCc--------------------------------------------------------------
Confidence 999999999999874210
Q ss_pred cccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECC-CCCEEE
Q psy4869 300 LNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHP-DGQYIA 378 (2435)
Q Consensus 300 ~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fsp-dg~~La 378 (2435)
.+.+..|...|.|+.|+. +.+.|+
T Consensus 183 -------------------------------------------------------~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 183 -------------------------------------------------------FMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred -------------------------------------------------------eeEEEeccceeEeecccccCCcEEE
Confidence 012456888999999998 567899
Q ss_pred EEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEECCCC-ceEEEEeccCccccccCcc
Q psy4869 379 SSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD-GCHIFTCSTDQTLAVWDLEKG-QRIKKMKGHSTFVNSCDPV 456 (2435)
Q Consensus 379 sgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~vwd~~tg-~~v~~l~~h~~~v~sv~~~ 456 (2435)
+|+.|+.||+||++.-..++..+.+|.-.|+.++|+|. ...|++++.|-+++|||.+.+ ..+.+.+.|+..+..++|+
T Consensus 208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws 287 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWS 287 (311)
T ss_pred ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccc
Confidence 99999999999999888888899999999999999994 468999999999999999854 4566778899999999999
Q ss_pred cCCCeEEEEEeCCCeEEEEeC
Q psy4869 457 RRGQLLIASGSDDCTVKVWDP 477 (2435)
Q Consensus 457 ~~~~~llasgs~Dg~I~vwD~ 477 (2435)
...+..+|+++.|+.++||+.
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccCceeeecccccceeeecc
Confidence 999999999999999999985
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=256.22 Aligned_cols=285 Identities=22% Similarity=0.268 Sum_probs=252.8
Q ss_pred EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q psy4869 1074 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1153 (2435)
Q Consensus 1074 ~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~ 1153 (2435)
....+..|+++|.++.|+-||++.++++.|.+|++|+...|.++++..+|...|..++.+.|+..|++|+.|+.+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCC--ceeeEeeccCCCEEEEEEeeCCCEEEE
Q psy4869 1154 DNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG--DCHKSLLAHEDSVTGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~--~~~~~~~~h~~~V~~i~~spd~~~lvs 1231 (2435)
.+++....+. +|.+.|+.+.|+.+...+++|+.|..+|+||-++. ++++.+....+.|.+|... ++.|++
T Consensus 89 ~TGkv~Rr~r------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 89 NTGKVDRRFR------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred ccCeeeeecc------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 9998877764 99999999999999999999999999999998764 5788888889999999884 667999
Q ss_pred EECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccc
Q psy4869 1232 TSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311 (2435)
Q Consensus 1232 gs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1311 (2435)
|+.||+++.||+|.+... ..
T Consensus 161 GS~DGtvRtydiR~G~l~------------------------------------------------------------sD 180 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKGTLS------------------------------------------------------------SD 180 (307)
T ss_pred eccCCcEEEEEeecceee------------------------------------------------------------hh
Confidence 999999999998865421 11
Q ss_pred cccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeE--EEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q psy4869 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVL--SLDMSYDSTLIATGSGDRTVKVWGLDYGD 1389 (2435)
Q Consensus 1312 ~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~--~la~spdg~~L~sGg~Dg~V~iwdl~~gk 1389 (2435)
.+..+|+|++|++||+...+++.++.+++.|-++++++..+.+|...-. +.+++.....+++|++||.|++||+.+.+
T Consensus 181 y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 181 YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 2367899999999999999999999999999999999999999997654 44566777899999999999999999999
Q ss_pred eEEEecccccc-eEEEEEeeCCCEEEEEeCCCcEEEEEC
Q psy4869 1390 CHKSLLAHEDS-VTGVTFVPKTHYFFTTSKDGRVKQWDA 1427 (2435)
Q Consensus 1390 ~~~~~~~h~~~-V~~laf~P~~~~laSgg~Dg~V~lWd~ 1427 (2435)
++..+..|... |..|+++|.-..|++++.. .+.+|--
T Consensus 261 ~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~~ 298 (307)
T KOG0316|consen 261 QISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWYQ 298 (307)
T ss_pred eeeeeccCCceeEEeeecccCccceeEecCC-ceeceee
Confidence 99999988887 9999999999888887754 4555543
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=273.92 Aligned_cols=459 Identities=20% Similarity=0.252 Sum_probs=332.5
Q ss_pred CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCce-eecccccc-cceeEEEEecCCCCCCCcCCcceEEEEEeCCCeE
Q psy4869 924 TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEI-LEDIPAHS-QELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSV 1001 (2435)
Q Consensus 924 ~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~-v~~~~~h~-~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V 1001 (2435)
.+..+.++||+.+.+.||++..+|.|.||++..+=. ...+.++. ..|.+++|++.+ +|.+.+.+|.|
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-----------RLFS~g~sg~i 92 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-----------RLFSSGLSGSI 92 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-----------eEEeecCCceE
Confidence 678899999999999999999999999999987553 33345554 479999999765 89999999999
Q ss_pred EEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE--EEe
Q psy4869 1002 KLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI--SLY 1079 (2435)
Q Consensus 1002 ~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~--~l~ 1079 (2435)
.-||+..++.. ...-...+.|.+++.+|.+..+++|+.||.+..++...++... .+.
T Consensus 93 ~EwDl~~lk~~---------------------~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 93 TEWDLHTLKQK---------------------YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred EEEecccCcee---------------------EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence 99998643310 0111246889999999999999999999977777777665443 344
Q ss_pred cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe--------ccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q psy4869 1080 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL--------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1151 (2435)
Q Consensus 1080 ~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~--------~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iw 1151 (2435)
-.+++|.+++|+|++..++.|+.||.|++||...+..+.... ....-|++|.|- ....|++|..-|.|.+|
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFW 230 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEE
Confidence 467899999999999999999999999999999998776322 123457888888 45579999999999999
Q ss_pred eCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce----eeEeeccCCCEEEEEEeeCCC
Q psy4869 1152 DADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC----HKSLLAHEDSVTGVTFVPKTH 1227 (2435)
Q Consensus 1152 D~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~----~~~~~~h~~~V~~i~~spd~~ 1227 (2435)
|...+..+... ..|.+.|.+++..++++++++++.|+.|..|...+.+. ......|...|.+++..++
T Consensus 231 d~~~gTLiqS~------~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 231 DSIFGTLIQSH------SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred cccCcchhhhh------hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--
Confidence 99988776654 47899999999999999999999999999998876643 2223468889999999876
Q ss_pred EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeee
Q psy4869 1228 YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLH 1307 (2435)
Q Consensus 1228 ~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1307 (2435)
.+++|+.|..+.+--.+..+..... .....|....+.++..++.+..|.-.....-.. .......+..+..+-
T Consensus 303 ~l~sgG~d~~l~i~~s~~~~~~~h~---~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrl----GS~~~~g~~~~~~Ll 375 (691)
T KOG2048|consen 303 ALISGGRDFTLAICSSREFKNMDHR---QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRL----GSVILQGEYNYIHLL 375 (691)
T ss_pred eEEecceeeEEEEccccccCchhhh---ccccccccceeecCccceEEEEeccccccceec----cCcccccccChhhhe
Confidence 8999999999998776653322111 111123333344444444444452211110000 001111112222333
Q ss_pred cccccccccEEEEEecCCcceeEEeecCCeEEEEEccc------------------------------------------
Q psy4869 1308 TRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT------------------------------------------ 1345 (2435)
Q Consensus 1308 ~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~------------------------------------------ 1345 (2435)
....+.+..|.|.+.+|||+.+|.+.- .+++||.++.
T Consensus 376 kl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le 454 (691)
T KOG2048|consen 376 KLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLE 454 (691)
T ss_pred eeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeE
Confidence 344455678999999999999999861 1122222211
Q ss_pred --------ceEEEEec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEee-CCCEEE
Q psy4869 1346 --------FKFFISLY--GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFF 1414 (2435)
Q Consensus 1346 --------~k~i~~~~--~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P-~~~~la 1414 (2435)
++.+..+. +-...|..|..+|||+|||+.+.+|.|.+|++++++.+.....-+..|++++|+| +.+.++
T Consensus 455 ~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lv 534 (691)
T KOG2048|consen 455 EFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLV 534 (691)
T ss_pred EEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEE
Confidence 01111111 1235688999999999999999999999999999987655545557899999995 668999
Q ss_pred EEeCCCcEEEEECCCce
Q psy4869 1415 TTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1415 Sgg~Dg~V~lWd~~~~~ 1431 (2435)
.+..|++|.=+|++.++
T Consensus 535 vats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 535 VATSNNQVFEFDIEARN 551 (691)
T ss_pred EEecCCeEEEEecchhh
Confidence 99999999999996544
|
|
| >KOG1544|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-30 Score=284.30 Aligned_cols=197 Identities=36% Similarity=0.665 Sum_probs=149.0
Q ss_pred CCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhh
Q psy4869 2172 EAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQ 2251 (2435)
Q Consensus 2172 ~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~ 2251 (2435)
.+||+.||.|+|||+ +++|+-|||+|++.| ||+++++..+|++|+
T Consensus 207 ~~LPE~F~As~KWp~---liH~plDQgnCa~SW--------------------------------afSTaavasDRiAI~ 251 (470)
T KOG1544|consen 207 EVLPEAFEASEKWPN---LIHEPLDQGNCAGSW--------------------------------AFSTAAVASDRVAIH 251 (470)
T ss_pred cccchhhhhhhcCCc---cccCccccCCcccce--------------------------------eeeeehhccceeEEe
Confidence 579999999999974 799999999999999 999999999999999
Q ss_pred cCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcc----ccc---------
Q psy4869 2252 SKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMG----RYI--------- 2318 (2435)
Q Consensus 2252 ~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~----~~~--------- 2318 (2435)
+.+.+...||+|+|+ .|... ...||+||+...||.|+.+.|++...+|||...+.. +.+
T Consensus 252 S~GR~t~~LSpQnLl----SC~~h----~q~GC~gG~lDRAWWYlRKrGvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgk 323 (470)
T KOG1544|consen 252 SLGRMTPVLSPQNLL----SCDTH----QQQGCRGGRLDRAWWYLRKRGVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGK 323 (470)
T ss_pred eccccccccChHHhc----chhhh----hhccCccCcccchheeeecccccccccccccCCCCCCCCCceeeccccCccc
Confidence 999988889999999 55432 236899999999999999999999999999543210 000
Q ss_pred ------------------------------cCcccceeecccCCc------ccccceeeEEEEecCC-----CcCcccce
Q psy4869 2319 ------------------------------EGIGHAASVMGSSNP------EVNNFEKVIRLYSCEG-----SINPRYIH 2357 (2435)
Q Consensus 2319 ------------------------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~~~~~H 2357 (2435)
++|.......||+.. .|..|+.+++-..... .....+.|
T Consensus 324 Rqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtH 403 (470)
T KOG1544|consen 324 RQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTH 403 (470)
T ss_pred ccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcccc
Confidence 001111112233332 3444444433221110 11124569
Q ss_pred EEEEEEeccCC----CCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEee
Q psy4869 2358 SVKIIGWGKSS----QNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAK 2411 (2435)
Q Consensus 2358 av~iVGyg~~~----~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~ 2411 (2435)
+|.|.|||++- ...+|||..||||+.|||+|||||.||.|.|-||+.++++.-.
T Consensus 404 sVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvIgAWGr 461 (470)
T KOG1544|consen 404 SVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVIGAWGR 461 (470)
T ss_pred eEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhhhhhhc
Confidence 99999999852 2457999999999999999999999999999999999876543
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=303.30 Aligned_cols=286 Identities=29% Similarity=0.494 Sum_probs=255.2
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc--eeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCc-c
Q psy4869 1081 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD--CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF-E 1157 (2435)
Q Consensus 1081 h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~--~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~-~ 1157 (2435)
|...|.++.|+++|+.+++++.|+.+++|+...++ ....+.+|...|.+++|+|+++++++++.|++|++||+... .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 46789999999999999999999999999997777 77777889999999999999999999999999999999433 4
Q ss_pred eeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCc
Q psy4869 1158 RIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1237 (2435)
Q Consensus 1158 ~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~ 1237 (2435)
.+.. +.+|...|++++|+|+++++++|+.|+.|++||+++++++..+.+|.+.|++++|.++++.|++++.|+.
T Consensus 238 ~~~~------l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 238 NLKT------LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred EEEE------ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 4444 4599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceE--EEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccc
Q psy4869 1238 VKQWDADNFERI--VTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1315 (2435)
Q Consensus 1238 I~vwD~~~~~~v--~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1315 (2435)
|++||+.++... ..+.. .....
T Consensus 312 i~vwd~~~~~~~~~~~~~~-------------------------------------------------------~~~~~- 335 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSG-------------------------------------------------------AENSA- 335 (456)
T ss_pred EEEEECCCCceeeeecccC-------------------------------------------------------CCCCC-
Confidence 999999887632 11100 00112
Q ss_pred cEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCe---EEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE
Q psy4869 1316 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPV---LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1392 (2435)
Q Consensus 1316 ~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V---~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~ 1392 (2435)
.+.++.|+|++++++++..|+.+++||+..++....+.+|...+ .....+++++++++|+.|+.|++|+..++..+.
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ 415 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh
Confidence 68899999999999999999999999999999999999998753 344557899999999999999999999999999
Q ss_pred Eeccc-ccceEEEEEeeCCCEEEEEe--CCCcEEEEECC
Q psy4869 1393 SLLAH-EDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428 (2435)
Q Consensus 1393 ~~~~h-~~~V~~laf~P~~~~laSgg--~Dg~V~lWd~~ 1428 (2435)
.+.+| ...|..++++|..+++++++ .|+.+++|..+
T Consensus 416 ~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 416 RLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999 89999999999999999998 78999999875
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=323.53 Aligned_cols=301 Identities=21% Similarity=0.373 Sum_probs=248.0
Q ss_pred CCeEEEEECCCCCeEEE-----ecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC----e----eEEEEecCCCcE
Q psy4869 96 NGSLKTFSLDTTDVIST-----FTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE----C----GLHRLSGHKGVI 162 (2435)
Q Consensus 96 ~G~i~i~d~~~~~~~~~-----l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~----~----~~~~l~gH~~~V 162 (2435)
+|..++|+......... +.+|.+.|.+++|+|+|++||+|+.|+.|+|||.... . +...+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 66788888887665443 4459999999999999999999999999999997531 1 223333 34689
Q ss_pred EEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEe-CCCeEEEeeCCCcEEEEEcCCCCCcccc
Q psy4869 163 TDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMR-EDSYLISGSNDAELKVWNVRDRSDIDTE 241 (2435)
Q Consensus 163 ~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~Dg~v~vwdl~~~~~~~~~ 241 (2435)
.+++|++. .+.+|++++.||+|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||++.+..+
T Consensus 536 ~~l~~~~~-~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~--- 611 (793)
T PLN00181 536 SGICWNSY-IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI--- 611 (793)
T ss_pred eeEEeccC-CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE---
Confidence 99999864 356799999999999999999999999999999999999997 6889999999999999998743110
Q ss_pred chhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcc
Q psy4869 242 DKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMK 321 (2435)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (2435)
T Consensus 612 -------------------------------------------------------------------------------- 611 (793)
T PLN00181 612 -------------------------------------------------------------------------------- 611 (793)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEEC-CCCCEEEEEeCCCeEEEEecCCceeeEEE
Q psy4869 322 RKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYH-PDGQYIASSGYDRQIFIWSVYGECENIGV 400 (2435)
Q Consensus 322 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fs-pdg~~Lasgs~Dg~I~iwd~~~~~~~~~~ 400 (2435)
..+..| ..|.++.|+ ++|.+|++|+.||.|++||++........
T Consensus 612 ----------------------------------~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 612 ----------------------------------GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT 656 (793)
T ss_pred ----------------------------------EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE
Confidence 011112 357888885 57999999999999999999865545567
Q ss_pred eeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC------CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEE
Q psy4869 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK------GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKV 474 (2435)
Q Consensus 401 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t------g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~v 474 (2435)
+.+|...|..+.|. ++..|++++.|+.|++||+.. ++.+..+.+|...+..+.|.+++ .+|++|+.|+.|++
T Consensus 657 ~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~i 734 (793)
T PLN00181 657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFV 734 (793)
T ss_pred ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEE
Confidence 78999999999997 788999999999999999974 35788899999999999999887 58899999999999
Q ss_pred EeCCCCcceEee--------------cCcccEEEEEECCCCCEEEEEecCCeEEEEEC
Q psy4869 475 WDPRKKNQAVSM--------------NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDL 518 (2435)
Q Consensus 475 wD~~~~~~~~~~--------------~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~ 518 (2435)
|+......+..+ .+...|.+++|+|++..|++|+.||.|+|||+
T Consensus 735 w~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 735 YHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 998765443222 13346999999999999999999999999996
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=258.02 Aligned_cols=287 Identities=27% Similarity=0.424 Sum_probs=242.3
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
..++||..+++-++|+.+|.+|.+++.|..+.+|-..++ +.+..+.+|.+.|++++.+.+.+++++|+.|.++++||++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCC-ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 357899999999999999999999999999999975333 4678899999999999999999999999999999999999
Q ss_pred CCceEEEEeccCccccccCcccCCCeEEEEE----eCCCeEEEEeCC-------CCcceEee-cCcccEEEEEECCCCCE
Q psy4869 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASG----SDDCTVKVWDPR-------KKNQAVSM-NNTYQVTSVAFNDTAEC 503 (2435)
Q Consensus 436 tg~~v~~l~~h~~~v~sv~~~~~~~~llasg----s~Dg~I~vwD~~-------~~~~~~~~-~~~~~v~sv~~sp~g~~ 503 (2435)
+|+.+..++. ...|..+.|+..+...+++. +..+.|.++|++ ..++...+ .+...++.+-|.|-+++
T Consensus 83 tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 83 TGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 9999999884 45688899999987766653 335789999998 33444444 46688999999999999
Q ss_pred EEEEecCCeEEEEECCCCc-EEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccccccc
Q psy4869 504 VLTGGIDNDIKMWDLRTNS-VVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEK 582 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s~~-~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~ 582 (2435)
|++|..||.|.+||+++++ .+...+.|...|+.|+++||..+++++|.|.+-++||++. -.+++++... .
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t----l~v~Kty~te-----~ 232 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT----LEVLKTYTTE-----R 232 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc----eeeEEEeeec-----c
Confidence 9999999999999999985 4566688999999999999999999999999999999984 4667777644 4
Q ss_pred CeEEEEEcCCCCEEEEecCCCe--E------------EEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEE
Q psy4869 583 NLLRCAWSVSGLYVTAGSADKC--V------------YIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIY 648 (2435)
Q Consensus 583 ~i~~v~~spdg~~Lasgs~Dg~--V------------~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~ 648 (2435)
++.+.+++|-..+++.|+...- | ++|++--.+.+..+++|-++|++|+|||+|+..++|+.||.|+
T Consensus 233 PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 233 PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 7889999998888888765332 2 2333333345677889999999999999999999999999999
Q ss_pred EecCC
Q psy4869 649 LGESP 653 (2435)
Q Consensus 649 vWd~~ 653 (2435)
+--++
T Consensus 313 ~h~Fd 317 (327)
T KOG0643|consen 313 LHHFD 317 (327)
T ss_pred EEEec
Confidence 86554
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=276.03 Aligned_cols=288 Identities=27% Similarity=0.494 Sum_probs=256.2
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
..+..|.+.|..+.|-++...|++|+.|..|++|++..+. ..+..+.+..+.|+++.|.++++++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4688999999999999999999999999999999987543 345667788899999999999999999999999999999
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
...+...++.||.+.|.++.|...+.. +++|+.|.+|++||+....+....-....++.|..+ ...+++|..|+.|+
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceE
Confidence 999999999999999999998877644 999999999999999999888888777777777776 56789999999999
Q ss_pred EEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC
Q psy4869 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594 (2435)
Q Consensus 515 lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~ 594 (2435)
.||+++..+...+..+. .|+++..+++|..|.+++.|.++.+.|++. ......+.............+.|||++.
T Consensus 326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt----~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT----KEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc----ccEEEEeeccccccccccceeEECCCCc
Confidence 99999999999998776 999999999999999999999999999994 4555666654433334578899999999
Q ss_pred EEEEecCCCeEEEEECCCCcEEEEecCCCC--CeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 595 YVTAGSADKCVYIWDTTTRRIAYKLPGHNG--SVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 595 ~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~--~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
|+++||.||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999988876444 599999999999999999999999993
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=249.28 Aligned_cols=278 Identities=22% Similarity=0.390 Sum_probs=247.6
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCcee-eEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEEC
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE-NIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~ 434 (2435)
.+++|.+.|.+++|+-+|..|++|+.|+++++|++..... ......+|.+.|-+++|+| +...|++++.|+.|++||+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 3568999999999999999999999999999999875422 2234578999999999998 5678999999999999999
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
+.++++..+......++ +.|+|++. .++.++.|..|.+.|.++.+.....+....++.++|+.++++++.-...|.|.
T Consensus 95 r~~k~~~~i~~~~eni~-i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 95 RSGKCTARIETKGENIN-ITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred ccCcEEEEeeccCcceE-EEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 99999998876655554 56888885 56678999999999999999999999999999999999999998888889999
Q ss_pred EEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC
Q psy4869 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594 (2435)
Q Consensus 515 lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~ 594 (2435)
|.....-+++..++.|.....||.|+|+|++||+|+.|-.+.|||+.. --|++.+..+. -+|..+.|+.||+
T Consensus 173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E----LiC~R~isRld----wpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE----LICERCISRLD----WPVRTLSFSHDGR 244 (313)
T ss_pred EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH----hhhheeecccc----CceEEEEeccCcc
Confidence 999999999999999999999999999999999999999999999983 45667776554 3789999999999
Q ss_pred EEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 595 YVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 595 ~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
+||+||.|..|-|=++++|..+..+ .+.++-..|+|||...+||-+++|.
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI-~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEI-PCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEe-eccCCceeEEecCCCceeeEEecCC
Confidence 9999999999999999999998888 5889999999999999999998774
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=250.11 Aligned_cols=286 Identities=25% Similarity=0.315 Sum_probs=253.4
Q ss_pred ccCCCEEEEEEcC---CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCC
Q psy4869 1038 KLEEQVLCARVSP---DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1114 (2435)
Q Consensus 1038 ~~~~~v~~l~~sp---dg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~ 1114 (2435)
.+.++|-.++||| +|-+|+.++.||.-.+-+-+++..+.++.+|.+.|++...+.+....++++.|=+-++||.-+|
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg 91 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG 91 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh
Confidence 3567888999987 8899999999999999999999999999999999999999988888999999999999999999
Q ss_pred ceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCC
Q psy4869 1115 DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDR 1194 (2435)
Q Consensus 1115 ~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg 1194 (2435)
..+..+. |...|.+++|+.|.++|++|+.++.+|+||++..+... ..+.+|.+.|..+.|....+.|++...|+
T Consensus 92 delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-----~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 92 DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-----KEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-----hhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 9888885 88899999999999999999999999999998765322 23468999999999999889999999999
Q ss_pred cEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCe
Q psy4869 1195 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKS 1274 (2435)
Q Consensus 1195 ~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~ 1274 (2435)
.||+||.+++..++.+ ..+.+|+++.+++++++ ++....+.|.+||..++..+.....
T Consensus 166 tVRLWD~rTgt~v~sL-~~~s~VtSlEvs~dG~i-lTia~gssV~Fwdaksf~~lKs~k~-------------------- 223 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSL-EFNSPVTSLEVSQDGRI-LTIAYGSSVKFWDAKSFGLLKSYKM-------------------- 223 (334)
T ss_pred ceEEEEeccCcEEEEE-ecCCCCcceeeccCCCE-EEEecCceeEEeccccccceeeccC--------------------
Confidence 9999999999988888 56788999999999984 5556678899999988766554322
Q ss_pred EEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEe-c
Q psy4869 1275 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL-Y 1353 (2435)
Q Consensus 1275 v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~-~ 1353 (2435)
...|.+.+++|+...|++|..|+.++.||+.+++-+..+ .
T Consensus 224 ---------------------------------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 224 ---------------------------------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK 264 (334)
T ss_pred ---------------------------------------ccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc
Confidence 244667788899999999999999999999999999887 8
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q psy4869 1354 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1354 ~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~ 1390 (2435)
+|.++|.|+.|+|||...++|++||.|++|+...++.
T Consensus 265 gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 265 GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999999999999999999999887764
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=250.15 Aligned_cols=287 Identities=21% Similarity=0.347 Sum_probs=243.1
Q ss_pred EEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcC
Q psy4869 154 RLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVR 233 (2435)
Q Consensus 154 ~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~ 233 (2435)
.+.||..+++.|.|+ .++.+|+||+.|.++.||=-.+|+++.++.+|.+.||++....+.+++++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN--~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYN--REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEec--CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 368999999999996 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhh
Q psy4869 234 DRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQ 313 (2435)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (2435)
+++.+..++
T Consensus 83 tGk~la~~k----------------------------------------------------------------------- 91 (327)
T KOG0643|consen 83 TGKQLATWK----------------------------------------------------------------------- 91 (327)
T ss_pred CCcEEEEee-----------------------------------------------------------------------
Confidence 875332110
Q ss_pred hhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEe-----CCCeEEE
Q psy4869 314 ELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG-----YDRQIFI 388 (2435)
Q Consensus 314 ~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs-----~Dg~I~i 388 (2435)
-..+|..+.|+++|++++... ..+.|.+
T Consensus 92 -----------------------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 92 -----------------------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred -----------------------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence 123466788899998877664 4468999
Q ss_pred EecCC------ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCc-eEEEEeccCccccccCcccCCCe
Q psy4869 389 WSVYG------ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ-RIKKMKGHSTFVNSCDPVRRGQL 461 (2435)
Q Consensus 389 wd~~~------~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~-~v~~l~~h~~~v~sv~~~~~~~~ 461 (2435)
+|++. ...+...+..+...++.+.|.|-++.|++|..||.|..||+++|+ .+...+.|...|+.+.++++. .
T Consensus 125 fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T 203 (327)
T KOG0643|consen 125 FDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-T 203 (327)
T ss_pred EEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-c
Confidence 99873 223466677788999999999999999999999999999999984 556668899999999999987 6
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCC--eEEEEECCCC------------cEEEEE
Q psy4869 462 LIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDN--DIKMWDLRTN------------SVVQKL 527 (2435)
Q Consensus 462 llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg--~V~lwD~~s~------------~~v~~l 527 (2435)
++++++.|.+.++||.++-..+..+....++++.+++|..++++.|+... .|.--+.+.+ +.+..+
T Consensus 204 ~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv 283 (327)
T KOG0643|consen 204 YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV 283 (327)
T ss_pred eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence 78899999999999999999999999999999999999888888775432 2222233333 456778
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 528 RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 528 ~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
++|=++|++|+|+|+|+..++|+.||.||+.-..
T Consensus 284 kGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 284 KGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 9999999999999999999999999999998665
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-27 Score=258.83 Aligned_cols=283 Identities=25% Similarity=0.371 Sum_probs=247.8
Q ss_pred CcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE--------eccCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q psy4869 1082 KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL--------LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1153 (2435)
Q Consensus 1082 ~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l--------~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~ 1153 (2435)
..-+-|..|+|||++|++|+.||.|.+||.-+|+..+.+ ..+.+.|.|+.|+.|...+++|+.||.|++|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 345778899999999999999999999999999765543 357889999999999999999999999999999
Q ss_pred CCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE
Q psy4869 1154 DNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs 1233 (2435)
+++.++..+. .+|..+|+|+.|+.|+..+.+++.|..+|+..+.+|++++.+++|...|+...|.++|+.+++++
T Consensus 293 ~tG~ClRrFd-----rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 293 ETGQCLRRFD-----RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred ecchHHHHhh-----hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 9999888764 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccc
Q psy4869 1234 KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1313 (2435)
Q Consensus 1234 ~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1313 (2435)
.||+|++|+.++.+++.++...+.
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~-------------------------------------------------------- 391 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGT-------------------------------------------------------- 391 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCC--------------------------------------------------------
Confidence 999999999999888766543221
Q ss_pred cccEEEEEecC-CcceeEEeecCCeEEEEEcccceEEEEecCCC---CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q psy4869 1314 EEQVLCARVSP-DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK---LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1389 (2435)
Q Consensus 1314 ~~~i~~ia~sp-dg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~---~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk 1389 (2435)
...++.+-..| +-.+|+++...+.|+|.++. ++.+++|...+ +...+.+.+|.|.++++.++|+.++.|.+..|+
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 22344443344 34678888888888888764 56677776433 567888899999999999999999999999999
Q ss_pred eEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1390 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1390 ~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
+-+.+.-|..-|-.++-||..+.+|+-+.||.+++|.
T Consensus 471 LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 471 LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999996
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=256.53 Aligned_cols=281 Identities=27% Similarity=0.511 Sum_probs=238.6
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCC---CEEEEEeCCCeEEEEECCC
Q psy4869 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG---CHIFTCSTDQTLAVWDLEK 436 (2435)
Q Consensus 360 gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg---~~L~s~s~Dg~I~vwd~~t 436 (2435)
-|.+.|.++... +.+|++|++||.+|+||..+. ....+.+|.++|.+++|..-. ..|++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk--~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK--SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc--eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 588999999887 789999999999999998775 455788999999999996533 3599999999999999987
Q ss_pred Cce----EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC-------------------------CcceEee-
Q psy4869 437 GQR----IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK-------------------------KNQAVSM- 486 (2435)
Q Consensus 437 g~~----v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~-------------------------~~~~~~~- 486 (2435)
+.. +...+||...|.++...+++ .++++|+.|..|+||+... +.++..+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 753 33445999999999988877 6788999999999999211 1122222
Q ss_pred cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 487 NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 487 ~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
.|..+|.++.|++ ...+++++.|.+|+.||+.++..+.++.+ ...++||+++|..++|++|+.|..|++||.|.. ..
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~-~g 334 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG-DG 334 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCC-CC
Confidence 5788999999988 77899999999999999999999888875 457899999999999999999999999999975 34
Q ss_pred CceEEEEeCcccccccCeEEEEEcCCC-CEEEEecCCCeEEEEECCCCc-EEEEecCCCCCeeEEEEcCCCCEEEEEECC
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSVSG-LYVTAGSADKCVYIWDTTTRR-IAYKLPGHNGSVNDVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~spdg-~~Lasgs~Dg~V~iwd~~s~~-~~~~l~~h~~~V~~l~fspd~~~Lasgs~D 644 (2435)
.-..+.+.+|.+ .|..+.|+|.. ..|++|+.|+++++||+++.+ +++.+.+|...|.++.|+. +..|++||.|
T Consensus 335 s~v~~s~~gH~n----wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD 409 (423)
T KOG0313|consen 335 SVVSQSLIGHKN----WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGAD 409 (423)
T ss_pred ceeEEeeecchh----hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCc
Confidence 456678889974 78999999966 557889999999999999887 9999999999999999984 4589999999
Q ss_pred CcEEEecCC
Q psy4869 645 KTIYLGESP 653 (2435)
Q Consensus 645 g~I~vWd~~ 653 (2435)
.+|+++...
T Consensus 410 ~~l~i~~~~ 418 (423)
T KOG0313|consen 410 NKLRIFKGS 418 (423)
T ss_pred ceEEEeccc
Confidence 999998753
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=245.77 Aligned_cols=291 Identities=22% Similarity=0.312 Sum_probs=248.5
Q ss_pred ccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC--CCeE
Q psy4869 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST--DQTL 429 (2435)
Q Consensus 352 ~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~--Dg~I 429 (2435)
+.|..++..-.+.|+++.|+++|.+|++++.|..|+|||...+. ....+..++..|..+.|......++.++. |.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-eeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45666777788999999999999999999999999999987653 45567777888999999887777777776 8899
Q ss_pred EEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEec
Q psy4869 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI 509 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~ 509 (2435)
|.-++.+.+.++.+.||...|+++..+|.+ ..+++++.|++|++||++..++...+..... ..++|+|.|-++|+|..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecC
Confidence 999999999999999999999999999988 7788999999999999998888777654433 35799999999999998
Q ss_pred CCeEEEEECCCC--cEEEEEe---cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCe
Q psy4869 510 DNDIKMWDLRTN--SVVQKLR---GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL 584 (2435)
Q Consensus 510 dg~V~lwD~~s~--~~v~~l~---~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i 584 (2435)
.+.|+|||+|+- .+..++. +.....+.|.|+|||+.|+.+...+.+++.|.- .+.....+.++.......
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf----~G~~~~tfs~~~~~~~~~- 235 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF----DGTVKSTFSGYPNAGNLP- 235 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc----CCcEeeeEeeccCCCCcc-
Confidence 889999999963 4555553 346788999999999999999999999999976 456777888776544333
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 585 LRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG-HNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 585 ~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~-h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
..++|+||++++++|+.||+|.+|++++|+.+..+.+ +.+++.++.|+|...++++++ ..+.+|=.
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p 302 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLP 302 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEec
Confidence 6889999999999999999999999999999999999 799999999999998888876 45555544
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=241.44 Aligned_cols=277 Identities=23% Similarity=0.322 Sum_probs=237.3
Q ss_pred EEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEE--EeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEe
Q psy4869 1076 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS--LLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWD 1152 (2435)
Q Consensus 1076 ~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~--l~~h~~~V~~v~fsp-~~~~l~s~s~Dg~V~iwD 1152 (2435)
+.+++|.+.|.+++|+.+|..|++|+.|+++.+|+++.++.... ..+|.+.|-.++|+| ....+++++.|+.|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45678999999999999999999999999999999987765544 357999999999998 556899999999999999
Q ss_pred CCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEE
Q psy4869 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT 1232 (2435)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsg 1232 (2435)
++..++...+. ....=.-+.|+|+|.++++++.|..|...|.++.+.+... .....+..+.|+.++++++..
T Consensus 94 ~r~~k~~~~i~-------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 94 IRSGKCTARIE-------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred eccCcEEEEee-------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeeeecCCCCEEEEe
Confidence 99999887764 3445556889999999999999999999999988765544 456678889998877777777
Q ss_pred ECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccc
Q psy4869 1233 SKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK 1312 (2435)
Q Consensus 1233 s~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1312 (2435)
..-|.|.|......+++..+..
T Consensus 166 ~GlG~v~ILsypsLkpv~si~A---------------------------------------------------------- 187 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKA---------------------------------------------------------- 187 (313)
T ss_pred cCCceEEEEecccccccccccc----------------------------------------------------------
Confidence 7778887776665555444322
Q ss_pred ccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE
Q psy4869 1313 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1392 (2435)
Q Consensus 1313 ~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~ 1392 (2435)
+.....||.|+|+|+|||+|+.|..+.+||++..-+.+.+.-+.-+|+.++||.||++||+|++|..|-|-++++|..+.
T Consensus 188 H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 188 HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE
Confidence 23457899999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred EecccccceEEEEEeeCCCEEEEEeCC
Q psy4869 1393 SLLAHEDSVTGVTFVPKTHYFFTTSKD 1419 (2435)
Q Consensus 1393 ~~~~h~~~V~~laf~P~~~~laSgg~D 1419 (2435)
.+ .+.++.+.|+|||...+||-+++|
T Consensus 268 eI-~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 268 EI-PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred Ee-eccCCceeEEecCCCceeeEEecC
Confidence 65 577899999999999999988766
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=254.66 Aligned_cols=286 Identities=22% Similarity=0.359 Sum_probs=253.4
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceee-------EEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECEN-------IGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~-------~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~v 431 (2435)
-|....+-|..|+|||+||++|+.||.|.+||..++... ...+..|..+|.++.|+.|...|++|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 366778899999999999999999999999997654221 1234568899999999999999999999999999
Q ss_pred EECCCCceEEEEe-ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec
Q psy4869 432 WDLEKGQRIKKMK-GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI 509 (2435)
Q Consensus 432 wd~~tg~~v~~l~-~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~ 509 (2435)
|.+++|++++.+. .|...|.++.|+.++. .+++++.|.++++.-+++++++..+ .|...|+...|.++|.++++++.
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9999999999996 8999999999999885 4668999999999999999999988 57888999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEEec--CCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEE
Q psy4869 510 DNDIKMWDLRTNSVVQKLRG--HSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586 (2435)
Q Consensus 510 dg~V~lwD~~s~~~v~~l~~--h~~~V~~i~~sp-dg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~ 586 (2435)
||+|++|+.++.+++.+++. ..-+|+.+-.-| +...++.+....+|.|-++. ++.++.+..... ..+...+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-----GQvVrsfsSGkR-EgGdFi~ 442 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-----GQVVRSFSSGKR-EGGDFIN 442 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-----ceEEeeeccCCc-cCCceEE
Confidence 99999999999999998863 455788888777 56789999999999999985 677777764322 1245678
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 587 v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
++.+|.|.++++.+.|+.++.|...+|++...+.-|...|..++-||..+.||+-+.||.+++|.
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999996
|
|
| >cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-27 Score=280.37 Aligned_cols=178 Identities=24% Similarity=0.313 Sum_probs=131.2
Q ss_pred ccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC--C
Q psy4869 2177 TFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK--G 2254 (2435)
Q Consensus 2177 ~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~--~ 2254 (2435)
.+|||+ .+ ++||||||.||+|| |||+++++|++++++.+ .
T Consensus 1 ~~d~r~-----~~-~~~v~dQg~~gsCw--------------------------------afa~~~~les~~~~~~~~~~ 42 (223)
T cd02619 1 SVDLRP-----LR-LTPVKNQGSRGSCW--------------------------------AFASAYALESAYRIKGGEDE 42 (223)
T ss_pred CCcchh-----cC-CCCcccCCCCcCcH--------------------------------HHHHHHHHHHHHHHhcCCcc
Confidence 489999 66 89999999999999 99999999999999876 4
Q ss_pred CcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHH-HHHHcCccCCCcccCCCCCcccc----------------
Q psy4869 2255 QVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWM-YWINAGLVDGGDYGTHDVSMGRY---------------- 2317 (2435)
Q Consensus 2255 ~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~-~~~~~Gi~~~~~y~~~~~~~~~~---------------- 2317 (2435)
... ||+|+|+ +|........+.||.||.+..++. +++++|+++|.+|||......+.
T Consensus 43 ~~~--lS~q~l~----~c~~~~~~~~~~~c~gG~~~~~~~~~~~~~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~ 116 (223)
T cd02619 43 YVD--LSPQYLY----ICANDECLGINGSCDGGGPLSALLKLVALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKD 116 (223)
T ss_pred ccc--CCHHHHH----HhccccccccCCCCCCCcHHHHHHHHHHHcCCCccccCCCCCCCCCCCCCCccchhhcceeecc
Confidence 444 9999999 887532211246899999999998 88899999999999976532210
Q ss_pred --------ccCcccceeecccCCcccccceeeEEEEecCC----------CcCcccceEEEEEEeccCC-CCcceEEEEc
Q psy4869 2318 --------IEGIGHAASVMGSSNPEVNNFEKVIRLYSCEG----------SINPRYIHSVKIIGWGKSS-QNEPYWLCTN 2378 (2435)
Q Consensus 2318 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~Hav~iVGyg~~~-~g~~yWiikN 2378 (2435)
+..++.++...+|+.+.+..+. .++.|.++. .....++|||+|||||.+. .+++||||||
T Consensus 117 y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~N 195 (223)
T cd02619 117 YRRVLKNNIEDIKEALAKGGPVVAGFDVYS-GFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKN 195 (223)
T ss_pred eeEeCchhHHHHHHHHHHCCCEEEEEEccc-chhcccCccccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEe
Confidence 0112223334456655554432 222333222 1123468999999999753 2789999999
Q ss_pred cCCCCcCCCceEEEEeeCcccc
Q psy4869 2379 SYNQGWGEQGLFKIRRGVNMCS 2400 (2435)
Q Consensus 2379 SWG~~WG~~Gy~~i~r~~n~cg 2400 (2435)
|||+.||++||+||.++. .|+
T Consensus 196 SwG~~wg~~Gy~~i~~~~-~~~ 216 (223)
T cd02619 196 SWGTDWGDNGYGRISYED-VYE 216 (223)
T ss_pred CCCCccccCCEEEEehhh-hhh
Confidence 999999999999999984 443
|
Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str |
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=281.74 Aligned_cols=247 Identities=25% Similarity=0.454 Sum_probs=214.6
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC--------------------------------c-------------
Q psy4869 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG--------------------------------E------------- 394 (2435)
Q Consensus 360 gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~--------------------------------~------------- 394 (2435)
+|.+.|.+++|++||+|||+||.||.||||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 8999999999999999999999999999997643 0
Q ss_pred --------------eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCC
Q psy4869 395 --------------CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460 (2435)
Q Consensus 395 --------------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~ 460 (2435)
..++..+.||.+.|.+|.|+.+ ++|+++++|++||||++...++++.+. |.+.|+|++|+|.+.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 0123456789999999999975 499999999999999999999998886 999999999999999
Q ss_pred eEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEe--cC------CC
Q psy4869 461 LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR--GH------SD 532 (2435)
Q Consensus 461 ~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~--~h------~~ 532 (2435)
++|++|+-|+.||||++...+.+.-...+.-|++++|.|+|++.++|+.+|..++|+.+..+.+..+. .| ..
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 99999999999999999988888877888899999999999999999999999999999888766542 11 22
Q ss_pred CEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 533 TVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 533 ~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
.|+++.|.|. ...+++.+.|..|||||++ ....+..++|.... .......|+.||++|++++.|..|+||+..
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~----~~~lv~KfKG~~n~--~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGR----DKDLVHKFKGFRNT--SSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEecc----chhhhhhhcccccC--CcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 7999999984 4468888999999999997 35677788877643 346788999999999999999999999986
Q ss_pred CCc
Q psy4869 612 TRR 614 (2435)
Q Consensus 612 s~~ 614 (2435)
...
T Consensus 577 ~~~ 579 (712)
T KOG0283|consen 577 SFN 579 (712)
T ss_pred CCc
Confidence 543
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-24 Score=240.49 Aligned_cols=291 Identities=20% Similarity=0.269 Sum_probs=246.2
Q ss_pred ceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeC--
Q psy4869 1115 DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG-- 1192 (2435)
Q Consensus 1115 ~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~-- 1192 (2435)
+..+.+......|.++.|+++|..+++++.|..+++||..+++....+. .++..+..++|......++-++.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~------skkyG~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN------SKKYGVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee------cccccccEEEEecCCceEEEccCCC
Confidence 3444555567889999999999999999999999999999998887775 66778888888877777766665
Q ss_pred CCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCC---cccccCceEEEEE
Q psy4869 1193 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNP---NVYLPLQIQVVTG 1269 (2435)
Q Consensus 1193 Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~---~~~~~~~~~lv~g 1269 (2435)
|..||..++.+.+.++.+.+|...|.+|+.+|-+..+++++.|++|++||+|..++...+.... ..|.|.+..++++
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALA 158 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEe
Confidence 8899999999999999999999999999999988999999999999999999888777666543 3567888888888
Q ss_pred ECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEE
Q psy4869 1270 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFF 1349 (2435)
Q Consensus 1270 ~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i 1349 (2435)
...+.|++||+|.-.. .+.. ......+...++..+.|||||+++++++..+.+++.|--+|...
T Consensus 159 ~~~~~IkLyD~Rs~dk---------------gPF~-tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~ 222 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDK---------------GPFT-TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVK 222 (311)
T ss_pred cCCCeEEEEEecccCC---------------CCce-eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEe
Confidence 8888999999984321 0000 01111244678999999999999999999999999999999999
Q ss_pred EEecCCCCCe---EEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecc-cccceEEEEEeeCCCEEEEEeCCCcEEEE
Q psy4869 1350 ISLYGHKLPV---LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA-HEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1425 (2435)
Q Consensus 1350 ~~~~~h~~~V---~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~-h~~~V~~laf~P~~~~laSgg~Dg~V~lW 1425 (2435)
.++..+...- ...+|+||+++|++|+.||+|.+|++++|+.+..+++ +.+++.++.|+|....|+|++ ..|.+|
T Consensus 223 ~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 223 STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 9998777553 6778999999999999999999999999999999988 789999999999999998775 469999
Q ss_pred ECCC
Q psy4869 1426 DADN 1429 (2435)
Q Consensus 1426 d~~~ 1429 (2435)
=++.
T Consensus 301 ~p~~ 304 (311)
T KOG1446|consen 301 LPDE 304 (311)
T ss_pred eccc
Confidence 8774
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-25 Score=284.33 Aligned_cols=283 Identities=26% Similarity=0.459 Sum_probs=250.0
Q ss_pred CCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCee
Q psy4869 73 GEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVIST-FTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG 151 (2435)
Q Consensus 73 g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~-l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~ 151 (2435)
.+...+.+..|. ...++.+..+..|.+|+..++..+.. +.||.+.|.+++|..-+.+|++|+.|.+++|||..++.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 356677778887 44888898999999999999999998 999999999999988789999999999999999999999
Q ss_pred EEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEE
Q psy4869 152 LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231 (2435)
Q Consensus 152 ~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwd 231 (2435)
.+++.||.+.|.++... ..++++||.|.+|++||+.+|.+++++.+|.++|+++... +.++++|+.|++|++||
T Consensus 284 ~~~l~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEecCCCceEEEEEcc----CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 99999999999999974 3468899999999999999999999999999999999987 88999999999999999
Q ss_pred cCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccch
Q psy4869 232 VRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDT 311 (2435)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (2435)
+...+
T Consensus 358 ~~~~~--------------------------------------------------------------------------- 362 (537)
T KOG0274|consen 358 PRTGK--------------------------------------------------------------------------- 362 (537)
T ss_pred hhhce---------------------------------------------------------------------------
Confidence 87432
Q ss_pred hhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEec
Q psy4869 312 TQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSV 391 (2435)
Q Consensus 312 ~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~ 391 (2435)
.+..+.||.+.|+++.+.+. .++++|+.|+.|++||+
T Consensus 363 ------------------------------------------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 363 ------------------------------------------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL 399 (537)
T ss_pred ------------------------------------------eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecC
Confidence 12357799999999988765 89999999999999999
Q ss_pred CCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEec-cCccccccCcccCCCeEEEEEeCCC
Q psy4869 392 YGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKG-HSTFVNSCDPVRRGQLLIASGSDDC 470 (2435)
Q Consensus 392 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~-h~~~v~sv~~~~~~~~llasgs~Dg 470 (2435)
.+....+..+.+|.+-|..+.+ .+++|++++.|++|++||.++++.++.+.+ |...+..+.+. ...+++++.|+
T Consensus 400 ~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~ 474 (537)
T KOG0274|consen 400 RTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDG 474 (537)
T ss_pred CchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCC
Confidence 8764567788999999977776 467999999999999999999999999998 66777776654 46788999999
Q ss_pred eEEEEeCCCCcceEee
Q psy4869 471 TVKVWDPRKKNQAVSM 486 (2435)
Q Consensus 471 ~I~vwD~~~~~~~~~~ 486 (2435)
.+++||++++.....+
T Consensus 475 ~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 475 SVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeEEEecccCchhhhh
Confidence 9999999998877655
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-25 Score=239.09 Aligned_cols=280 Identities=20% Similarity=0.326 Sum_probs=231.9
Q ss_pred EEEEECCC-CCEEEEEe-------CCCeEEEEecCCc-eeeEEEeeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEECC
Q psy4869 366 FCSKYHPD-GQYIASSG-------YDRQIFIWSVYGE-CENIGVMSGHTGAVMDLKFSTD-GCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 366 ~~l~fspd-g~~Lasgs-------~Dg~I~iwd~~~~-~~~~~~l~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~vwd~~ 435 (2435)
+++.|+|- .++||.+. ..|++.|.++.+. ......-..-...+.+++|+++ ...+++++.||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889983 34444442 3578999988532 1122222234688999999984 4578899999999999964
Q ss_pred C-CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECC-CCCEEEEEecCCe
Q psy4869 436 K-GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFND-TAECVLTGGIDND 512 (2435)
Q Consensus 436 t-g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp-~g~~l~sgs~dg~ 512 (2435)
. .+++..++.|...|.+++|.+..+..+++++.|++|++||...++.+.++ .|...|...+|+| .++.+++++.||.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3 46889999999999999999999999999999999999999999888887 5788899999999 5789999999999
Q ss_pred EEEEECCCCcEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC
Q psy4869 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV 591 (2435)
Q Consensus 513 V~lwD~~s~~~v~~l~~h~~~V~~i~~sp-dg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp 591 (2435)
+++||++.......+..|...|.|+.|+. +.+.|++|+.|+.||+||+|+. ..++..+.+|.. .|.++.|||
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~---r~pl~eL~gh~~----AVRkvk~Sp 244 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL---RTPLFELNGHGL----AVRKVKFSP 244 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc---cccceeecCCce----EEEEEecCc
Confidence 99999997544445999999999999997 6778999999999999999974 356778888864 689999999
Q ss_pred CC-CEEEEecCCCeEEEEECCCC-cEEEEecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEecC
Q psy4869 592 SG-LYVTAGSADKCVYIWDTTTR-RIAYKLPGHNGSVNDVQFHPK-EPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 592 dg-~~Lasgs~Dg~V~iwd~~s~-~~~~~l~~h~~~V~~l~fspd-~~~Lasgs~Dg~I~vWd~ 652 (2435)
.. ..|++++.|-+++|||...+ ..+.+...|..-|..+.|++. ..++|+.+-|+.++||+.
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 54 68899999999999998854 566667779999999999985 459999999999999984
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=249.25 Aligned_cols=210 Identities=20% Similarity=0.287 Sum_probs=165.2
Q ss_pred eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceE------ee-cCcccEEEEEECCCCCEEEEEecCC
Q psy4869 439 RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV------SM-NNTYQVTSVAFNDTAECVLTGGIDN 511 (2435)
Q Consensus 439 ~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~------~~-~~~~~v~sv~~sp~g~~l~sgs~dg 511 (2435)
.+..+.+|.+.|.++.|+|-.+.++++|+.|..|+||.+..+-... .+ .....+.++.|+|...-|+..+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 4667789999999999999999999999999999999987432211 12 2344689999999888777778899
Q ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC
Q psy4869 512 DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV 591 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp 591 (2435)
.++|||+.+++.+..+.+|.+.|.+..|+.||..|++++.|+.|+|||.|. ..++++...+|..- .=.++.|--
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa---~~~piQ~te~H~~~---rdsRv~w~G 224 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA---SMEPIQTTEGHGGM---RDSRVLWAG 224 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc---CCCccccccccccc---hhheeeecc
Confidence 999999999999999999999999999999999999999999999999985 56788888888753 224677876
Q ss_pred CCCEEEEecCC----CeEEEEECCCC-cEEEEecC-CCCCeeEEEEcCCCCEEE-EEECCCcEEEecCCC
Q psy4869 592 SGLYVTAGSAD----KCVYIWDTTTR-RIAYKLPG-HNGSVNDVQFHPKEPIIM-SASSDKTIYLGESPL 654 (2435)
Q Consensus 592 dg~~Lasgs~D----g~V~iwd~~s~-~~~~~l~~-h~~~V~~l~fspd~~~La-sgs~Dg~I~vWd~~~ 654 (2435)
+-..|++.+.+ ..|++||.+.. .++..+.- ..-.|---.|.||.++|+ +|-.+..|+.+++.-
T Consensus 225 n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 225 NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence 55567776654 56999998864 45554432 223455557889888555 555677888877653
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=277.12 Aligned_cols=277 Identities=26% Similarity=0.512 Sum_probs=248.3
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCce
Q psy4869 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR 439 (2435)
Q Consensus 360 gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~ 439 (2435)
.|...+.+..|+ +.++++++.|++|++||..........+.+|.+.|+.+++..-+.+|++|+.|.++++||..+|++
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 366778898998 778999999999999999887766666999999999999987788999999999999999999999
Q ss_pred EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEecCCeEEEEEC
Q psy4869 440 IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGIDNDIKMWDL 518 (2435)
Q Consensus 440 v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~ 518 (2435)
.+.+.+|...+.++... +..+++|+.|.+|++|++.++..+..+. |...|+++.++ +.++++|+.||.|.+||+
T Consensus 284 ~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 99999999998887654 3578889999999999999999999997 99999999998 889999999999999999
Q ss_pred CCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCC-ceEEEEeCcccccccCeEEEEEcCCCCEEE
Q psy4869 519 RTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE-RCVKVMSGHQHNFEKNLLRCAWSVSGLYVT 597 (2435)
Q Consensus 519 ~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~-~~v~~~~~h~~~~~~~i~~v~~spdg~~La 597 (2435)
.++++++.+.+|.+.|+++.+... .++++|+.|++|++||++. . +|+.++.+|.... -.....+++|+
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~----~~~c~~tl~~h~~~v------~~l~~~~~~Lv 427 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT----KRKCIHTLQGHTSLV------SSLLLRDNFLV 427 (537)
T ss_pred hhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCc----hhhhhhhhcCCcccc------cccccccceeE
Confidence 999999999999999999988765 8999999999999999994 4 8999999987432 22334589999
Q ss_pred EecCCCeEEEEECCCCcEEEEecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCcc
Q psy4869 598 AGSADKCVYIWDTTTRRIAYKLPG-HNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHC 656 (2435)
Q Consensus 598 sgs~Dg~V~iwd~~s~~~~~~l~~-h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~ 656 (2435)
+++.|+.|++||.++++++..+.+ |...|.++++. ...+++++.||.+++||++...
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred eccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 999999999999999999999999 77899999887 5689999999999999998543
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=254.53 Aligned_cols=292 Identities=20% Similarity=0.360 Sum_probs=225.8
Q ss_pred EEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEE
Q psy4869 152 LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231 (2435)
Q Consensus 152 ~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwd 231 (2435)
+..|.||...|.|++=+|. .-..++||+.||.|+|||+.+-+|+.++.+|.+.|.++++.. ..++++++|++|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~-~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPN-KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcc-hhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 5567999999999999864 334689999999999999999999999999999999999976 7899999999999998
Q ss_pred cCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccch
Q psy4869 232 VRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDT 311 (2435)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (2435)
++.. .+++
T Consensus 136 ~~~~-p~~t----------------------------------------------------------------------- 143 (433)
T KOG0268|consen 136 IDGP-PLHT----------------------------------------------------------------------- 143 (433)
T ss_pred ccCC-ccee-----------------------------------------------------------------------
Confidence 7631 0000
Q ss_pred hhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEec
Q psy4869 312 TQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSV 391 (2435)
Q Consensus 312 ~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~ 391 (2435)
+.+ ...+..+.-+..+..+|++|.
T Consensus 144 ----------------------------------------------ilg-~s~~~gIdh~~~~~~FaTcGe--------- 167 (433)
T KOG0268|consen 144 ----------------------------------------------ILG-KSVYLGIDHHRKNSVFATCGE--------- 167 (433)
T ss_pred ----------------------------------------------eec-cccccccccccccccccccCc---------
Confidence 000 000011111112333444432
Q ss_pred CCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCe
Q psy4869 392 YGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT 471 (2435)
Q Consensus 392 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~ 471 (2435)
.|.|||.+...++..+.-..+.+.++.|+|....+|++++.|+.
T Consensus 168 ------------------------------------~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 168 ------------------------------------QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ------------------------------------eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 24445544444555555555557778888888899999999999
Q ss_pred EEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCC-cEEEEEecCCCCEEEEEEcCCCCEEEEEE
Q psy4869 472 VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTN-SVVQKLRGHSDTVTGLSLSPDGSYILSNA 550 (2435)
Q Consensus 472 I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~-~~v~~l~~h~~~V~~i~~spdg~~las~s 550 (2435)
|.+||++...++........-+.++|+|.+-.+++|+.|..++.||++.. +++....+|...|.+|+|+|.|+-+++||
T Consensus 212 IvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred eEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 99999999999999988888899999998888999999999999999974 57788899999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEE
Q psy4869 551 MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAY 617 (2435)
Q Consensus 551 ~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~ 617 (2435)
.|++|+||..+... .+- .+.. ..-..|.++.||.|.+|+++||+|+.|++|..+..+.+.
T Consensus 292 yDksIRIf~~~~~~--SRd--iYht---kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGH--SRD--IYHT---KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred ccceEEEeecCCCc--chh--hhhH---hhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 99999999987421 111 1111 112368999999999999999999999999987555444
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=248.43 Aligned_cols=621 Identities=17% Similarity=0.231 Sum_probs=344.5
Q ss_pred eeeeeeCCCCceEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEE
Q psy4869 15 SFNIIASPNCNVVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVA 93 (2435)
Q Consensus 15 ~~~~~~~~~~~v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~ 93 (2435)
.-+|+..|...|.-+.|.+=...+||++ .|--|+||.+..+-.+.+ ......+.+....+.++.+.|-..-|.+.
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L----Sape~~~g~~~~~vE~l~fHpTaDgil~s 146 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL----SAPEIDVGGGNVIVECLRFHPTADGILAS 146 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc----CCcceeecCCceEEEEeecccCcCceEEe
Confidence 4578999999999998766688899998 778899999984432221 12334555666677788888776556666
Q ss_pred EcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccC-CeeEEEEecCCCc-EEEEEEeecC
Q psy4869 94 YTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVA-ECGLHRLSGHKGV-ITDIRFMSQP 171 (2435)
Q Consensus 94 ~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~-~~~~~~l~gH~~~-V~~v~~~~~~ 171 (2435)
+..|.++|||+.+++.+.++.+|.+.|-++.|+.||.+||+.+.|+.|+|||-+. +++++...+|.+- =..|.|. .
T Consensus 147 ~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~--G 224 (1012)
T KOG1445|consen 147 GAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWA--G 224 (1012)
T ss_pred ccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeec--c
Confidence 6899999999999999999999999999999999999999999999999999764 6678888999873 3447786 3
Q ss_pred CCcEEEEEeCC----CcEEEEeccCC-cccccccc-ccceEEEEEEEeCCCe-EEEeeCCCcEEEEEcCCCCCccccchh
Q psy4869 172 GHHFVVSSAKD----TFVKIWDADTG-DCFKTMAA-HLTEVWGVCVMREDSY-LISGSNDAELKVWNVRDRSDIDTEDKD 244 (2435)
Q Consensus 172 ~~~~l~S~s~D----g~I~iWd~~tg-~~~~~~~~-h~~~V~~l~~~p~~~~-l~s~s~Dg~v~vwdl~~~~~~~~~~~~ 244 (2435)
+.+.|+|.+.+ ..|++||.+.- ..++++.- ....|.---|.||.++ +++|-.+.++..+.+...+..-.....
T Consensus 225 n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~ 304 (1012)
T KOG1445|consen 225 NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFE 304 (1012)
T ss_pred chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhh
Confidence 33456776654 56999998764 34554422 1122333335677666 557777888888887765432110000
Q ss_pred hhh-------------------hhccee------ecccCCCC---ceeeeEEEEeecccccccCC--ccceEEE------
Q psy4869 245 KLS-------------------EQLNQL------LLSEDEPD---LTVSKIEVQIINELKNLSTG--KKKWLQV------ 288 (2435)
Q Consensus 245 ~~~-------------------~~~~~~------~~~~~~~~---~~v~~~~~~~~~~~~~~~~g--~~~~~~~------ 288 (2435)
-.. ..++.. ...+-.+. ....++..+-..+......+ ...|+..
T Consensus 305 ~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vq 384 (1012)
T KOG1445|consen 305 LTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQ 384 (1012)
T ss_pred hcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCcccccc
Confidence 000 000000 00000000 00000000000000000000 0000000
Q ss_pred ---------------------------------EEEeeeecc------cccccCccc--cccchhh---hhhhhhcccCC
Q psy4869 289 ---------------------------------FRLALCISS------ITLNIDDFA--FGIDTTQ---ELRTRSMKRKN 324 (2435)
Q Consensus 289 ---------------------------------~~~~~~~~~------~~~~~~~~~--~~~~~~~---~l~~~~~~~~~ 324 (2435)
+........ ...+.-+.. -.+.... ++-.+.+..++
T Consensus 385 KvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~ 464 (1012)
T KOG1445|consen 385 KVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKEN 464 (1012)
T ss_pred ccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhccccccccc
Confidence 000000000 000000000 0000000 00000111111
Q ss_pred CeEEEEeCccceeeeeecccccCcccc--ccceeEec--------ccCC----------cEE-------EEEECCCCCEE
Q psy4869 325 DEVTVYDREKNYKVQKVQKDVGRTSNL--FAPIMLLE--------GHGG----------EIF-------CSKYHPDGQYI 377 (2435)
Q Consensus 325 ~~v~i~d~~~~~~~~~~~~~~~~~~~~--~~p~~~l~--------gH~~----------~V~-------~l~fspdg~~L 377 (2435)
+...-- .+.. .. ......... ..|....+ .|.. .|- ....+......
T Consensus 465 g~~~~~-~dad----~~-~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~ 538 (1012)
T KOG1445|consen 465 GVHTPN-ADAD----ST-QGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVP 538 (1012)
T ss_pred CccCCC-cccc----cc-cCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcccccccc
Confidence 100000 0000 00 000000000 00000000 0000 000 00000000111
Q ss_pred EEEeCCCeEEEEecCCceeeEEEeeCCCCC----eeE---------EEEccCCCEEEE--EeCCCeEEEEECCC-CceE-
Q psy4869 378 ASSGYDRQIFIWSVYGECENIGVMSGHTGA----VMD---------LKFSTDGCHIFT--CSTDQTLAVWDLEK-GQRI- 440 (2435)
Q Consensus 378 asgs~Dg~I~iwd~~~~~~~~~~l~~h~~~----V~~---------l~~s~dg~~L~s--~s~Dg~I~vwd~~t-g~~v- 440 (2435)
.+.+....-.+.--...+....-..+|... .+. =-|+.+..+++. .+..|.|-||+++. |+.-
T Consensus 539 ~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPD 618 (1012)
T KOG1445|consen 539 LSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPD 618 (1012)
T ss_pred ccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCc
Confidence 111111111111100000111111122211 111 123334445544 45678999999864 2211
Q ss_pred EEEe--ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc-------eEee-cCcccEEEEEECCC-CCEEEEEec
Q psy4869 441 KKMK--GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ-------AVSM-NNTYQVTSVAFNDT-AECVLTGGI 509 (2435)
Q Consensus 441 ~~l~--~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~-------~~~~-~~~~~v~sv~~sp~-g~~l~sgs~ 509 (2435)
..+. .....|.++.|.|-+...++.+++||.|++|.+..+.. ...+ .|...|+++.|+|- .+.|+++++
T Consensus 619 gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 619 GVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred ccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence 1111 13456889999999999999999999999999875432 2222 46778999999994 568899999
Q ss_pred CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEE
Q psy4869 510 DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589 (2435)
Q Consensus 510 dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~ 589 (2435)
|-+|++||+++++....+.+|.+.|.+++|+|||+++|+.+.||+|++|..+.. ..+++.-.+.. +..-.++.|
T Consensus 699 d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~---e~pv~Eg~gpv---gtRgARi~w 772 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR---EQPVYEGKGPV---GTRGARILW 772 (1012)
T ss_pred cceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC---CCccccCCCCc---cCcceeEEE
Confidence 999999999999999999999999999999999999999999999999998852 34444333322 234467889
Q ss_pred cCCCCEEEEecCCC----eEEEEECCCC--cEEEEecCCCCC-eeEEEEcCCCC-EEEEEECCCcEEEecCC
Q psy4869 590 SVSGLYVTAGSADK----CVYIWDTTTR--RIAYKLPGHNGS-VNDVQFHPKEP-IIMSASSDKTIYLGESP 653 (2435)
Q Consensus 590 spdg~~Lasgs~Dg----~V~iwd~~s~--~~~~~l~~h~~~-V~~l~fspd~~-~Lasgs~Dg~I~vWd~~ 653 (2435)
.-||+++++.+.|. .|.+||..+- .++.+..-...+ +---.+.+|.. +|++|-.|..|++|++-
T Consensus 773 acdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 773 ACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred EecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 99999999988765 5888987643 344433111111 11112334444 77888899999999874
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=239.05 Aligned_cols=292 Identities=26% Similarity=0.382 Sum_probs=241.5
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC-----------------ceeeEEEeeCCCCCeeEEEEccCCC
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG-----------------ECENIGVMSGHTGAVMDLKFSTDGC 418 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-----------------~~~~~~~l~~h~~~V~~l~~s~dg~ 418 (2435)
..+..|..++.+.+|+|||.++|+|+.|..|+|.|+.. .-..+..+..|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 46789999999999999999999999999999999851 1124567788999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEE--eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee----cCcccE
Q psy4869 419 HIFTCSTDQTLAVWDLEKGQRIKKM--KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM----NNTYQV 492 (2435)
Q Consensus 419 ~L~s~s~Dg~I~vwd~~tg~~v~~l--~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~----~~~~~v 492 (2435)
.|++++.|++|++||+......+.+ -.....|.++.|+|.|.+ ++.|.+...+++||+++.++.... .|...|
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 9999999999999998653221111 224567889999999865 456888899999999998876655 477889
Q ss_pred EEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEe-cCCC-CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceE
Q psy4869 493 TSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR-GHSD-TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCV 570 (2435)
Q Consensus 493 ~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~-~h~~-~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v 570 (2435)
+++.+++.|++.++|+.||.|+|||.-+++++.++. .|.+ .|.+..|..+|++|++.+.|..+++|.+. .++++
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~----t~R~l 340 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS----TGRML 340 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec----CCceE
Confidence 999999999999999999999999999999999884 5665 78999999999999999999999999998 57889
Q ss_pred EEEeCcccccc-cCeEEEEEcCCCCEEEEec-CCCeEEEEECCCCcEEEEe-cCCCCCeeEEEEcCCCCEEEEEECCCcE
Q psy4869 571 KVMSGHQHNFE-KNLLRCAWSVSGLYVTAGS-ADKCVYIWDTTTRRIAYKL-PGHNGSVNDVQFHPKEPIIMSASSDKTI 647 (2435)
Q Consensus 571 ~~~~~h~~~~~-~~i~~v~~spdg~~Lasgs-~Dg~V~iwd~~s~~~~~~l-~~h~~~V~~l~fspd~~~Lasgs~Dg~I 647 (2435)
..+.|...... .--....|.....|++.-. ..+.+.-||.++...+..+ -||++.+..+.-+|.++.+++|++|-.+
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence 88887532211 1123456776677776643 3577999999988655444 3899999999999999999999999999
Q ss_pred EEecC
Q psy4869 648 YLGES 652 (2435)
Q Consensus 648 ~vWd~ 652 (2435)
++|.-
T Consensus 421 RFWyr 425 (430)
T KOG0640|consen 421 RFWYR 425 (430)
T ss_pred eeeee
Confidence 99975
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-24 Score=236.60 Aligned_cols=292 Identities=20% Similarity=0.343 Sum_probs=234.8
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccC-----------------C-eeEEEEecCCCcEEEEEEeecCCC
Q psy4869 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVA-----------------E-CGLHRLSGHKGVITDIRFMSQPGH 173 (2435)
Q Consensus 112 ~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~-----------------~-~~~~~l~gH~~~V~~v~~~~~~~~ 173 (2435)
.+..|++.+.+.+|+|||.++||||.|..|+|.|++. . ..+++|..|..+|+++.|+|. .
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr--e 184 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR--E 184 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch--h
Confidence 5667999999999999999999999999999999861 0 136788999999999999964 4
Q ss_pred cEEEEEeCCCcEEEEeccCCcccccc--ccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcc
Q psy4869 174 HFVVSSAKDTFVKIWDADTGDCFKTM--AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLN 251 (2435)
Q Consensus 174 ~~l~S~s~Dg~I~iWd~~tg~~~~~~--~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~ 251 (2435)
.+|+|+++|++||++|...-...+.+ -....+|.++.|+|.|++|+.|.+-.++++||+.+.++...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs----------- 253 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS----------- 253 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-----------
Confidence 68999999999999998765433322 23457899999999999999999999999999986432100
Q ss_pred eeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEe
Q psy4869 252 QLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYD 331 (2435)
Q Consensus 252 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d 331 (2435)
.+
T Consensus 254 ------------------------------------------------an------------------------------ 255 (430)
T KOG0640|consen 254 ------------------------------------------------AN------------------------------ 255 (430)
T ss_pred ------------------------------------------------cC------------------------------
Confidence 00
Q ss_pred CccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCC-CCeeE
Q psy4869 332 REKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHT-GAVMD 410 (2435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~-~~V~~ 410 (2435)
--.+|.+.|+++.+++.|++.++|+.||.|+|||--........-..|. ..|.+
T Consensus 256 -------------------------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcS 310 (430)
T KOG0640|consen 256 -------------------------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCS 310 (430)
T ss_pred -------------------------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeee
Confidence 0126899999999999999999999999999999544332222334565 57999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccC-----ccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceE-
Q psy4869 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHS-----TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV- 484 (2435)
Q Consensus 411 l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~-----~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~- 484 (2435)
..|..+|++|++.+.|..+++|.+.+|+.+..+.|.. ..-....|.....+.|.---..+.+.-||.++.....
T Consensus 311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 9999999999999999999999999999999887641 1122344666665666555556789999999876554
Q ss_pred -eecCcccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 485 -SMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 485 -~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
.+.|.+.+..+.-+|.+.-+++++.|-.++.|--+
T Consensus 391 ~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 391 LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 45799999999999999999999999999999643
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=238.00 Aligned_cols=345 Identities=22% Similarity=0.376 Sum_probs=266.6
Q ss_pred CEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEE
Q psy4869 130 HRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209 (2435)
Q Consensus 130 ~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l 209 (2435)
.+|++.-.|++++ .+.++.+.||+..|+.|+.- ....++.++|.|.+-+||.+++|.|+.++.+|.+.|+++
T Consensus 125 srivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~--~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsi 196 (481)
T KOG0300|consen 125 SRIVSSFKDGTVK------FRLVRELEGHKDGIWHVAAD--STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSI 196 (481)
T ss_pred chheeeecCCcee------Eeehhhhcccccceeeehhh--cCCcceeecccccceeEEeeccccceeeecccccceeeE
Confidence 3455555566542 34567789999999999974 445589999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEE
Q psy4869 210 CVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVF 289 (2435)
Q Consensus 210 ~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 289 (2435)
.|++.+.++++++.|++..||...-.-.+.. .. ...-..++++
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~----~~---a~~~hSsEeE------------------------------ 239 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPS----NN---APSDHSSEEE------------------------------ 239 (481)
T ss_pred EeccccceEEEccCCcchHHHHHhhcCcCCC----CC---CCCCCCchhh------------------------------
Confidence 9999999999999999999996331100000 00 0000000000
Q ss_pred EEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEE
Q psy4869 290 RLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSK 369 (2435)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~ 369 (2435)
.+..+ .. .-|.+.. ...+ ...+..|++.|.||.+.|.++.
T Consensus 240 -------------------~e~sD-----------e~--~~d~d~~-----~~sD---~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 240 -------------------EEHSD-----------EH--NRDTDSS-----EKSD---GHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred -------------------hhccc-----------cc--ccccccc-----cccC---CceeeeeeeeeeccccceEehh
Confidence 00000 00 0000000 0000 0123357889999999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC-ceEEEEeccCc
Q psy4869 370 YHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG-QRIKKMKGHST 448 (2435)
Q Consensus 370 fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg-~~v~~l~~h~~ 448 (2435)
|-..|+.+++++.|.+..+||++.+ ..+..+.+|....+.+.-+|..+++++.+.|-+.++||++.. ..+..|+||.+
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtg-e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd 358 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETG-EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD 358 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccC-ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc
Confidence 9999999999999999999999876 466789999999999999999999999999999999998743 56788999999
Q ss_pred cccccCcccCCCeEEEEEeCCCeEEEEeCCCC-cceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE--
Q psy4869 449 FVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK-NQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQ-- 525 (2435)
Q Consensus 449 ~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~-~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~-- 525 (2435)
.|.++.|.-+. .+++|++|.+|++||++.. .++..+....+++.++.+..+..|+.-..+..|++||+...++.+
T Consensus 359 tVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 359 TVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred ceeEEEEecCC--ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 99999987664 6899999999999999864 467777888899999999999999999999999999998665432
Q ss_pred --EEecCCCCEEEEEEcCCC--CEEEEEECCCcEEEEEcCC
Q psy4869 526 --KLRGHSDTVTGLSLSPDG--SYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 526 --~l~~h~~~V~~i~~spdg--~~las~s~Dg~I~lWdl~~ 562 (2435)
.-++|..-|.|++|..+. .-|.+++.|..+.=|.+..
T Consensus 437 rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 437 RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred cccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 236899999999998653 4688999999999999863
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=271.25 Aligned_cols=302 Identities=25% Similarity=0.355 Sum_probs=251.6
Q ss_pred CCcCEEEEEEcCCCCEEEEEE--CCCcEEEEEccC------------CceeEEEeccCCCEEEEEEccCCCEEEEEeCCC
Q psy4869 1081 HKLPVLSLDMSYDSTLIATGS--GDRTVKVWGLDY------------GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG 1146 (2435)
Q Consensus 1081 h~~~V~sl~~spdg~~L~Sgs--~Dg~I~vWd~~t------------~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg 1146 (2435)
+...|.+|+.+||+..+++|+ .||.++||+.+. .+.+.++..|.+.|+|+.|+|||++|++|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345699999999999999999 899999998742 234556678999999999999999999999999
Q ss_pred cEEEEeCCC------------cceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccC
Q psy4869 1147 RVKQWDADN------------FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE 1214 (2435)
Q Consensus 1147 ~V~iwD~~~------------~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~ 1214 (2435)
.|.+|+... ......++....+.+|...|..++|+|++.++++++.|+.|.+|+..+.+.+..+.+|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999999772 12233445566778999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccccccccc
Q psy4869 1215 DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETK 1294 (2435)
Q Consensus 1215 ~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~ 1294 (2435)
..|..+.|.|-|++|++-+.|++|++|+..+......+.-+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~p--------------------------------------- 212 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKP--------------------------------------- 212 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccc---------------------------------------
Confidence 99999999999999999999999999997664443332110
Q ss_pred ccccccceeeeeecccccccccEEEEEecCCcceeEEee--cC--CeEEEEEcccceEEEEecCCCCCeEEEEEecC---
Q psy4869 1295 DVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL--LD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYD--- 1367 (2435)
Q Consensus 1295 ~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs--~d--G~V~v~d~~~~k~i~~~~~h~~~V~~la~spd--- 1367 (2435)
.........++.+.|||||++||+.- .. ..+.|.+.++.+.-..+-||.+++.++.|+|.
T Consensus 213 -------------f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe 279 (942)
T KOG0973|consen 213 -------------FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFE 279 (942)
T ss_pred -------------hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhc
Confidence 01223456788899999999999853 22 25889999999999999999999999999981
Q ss_pred ----------CC----EEEEEeCCCcEEEEeCCCCceEEEec-ccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCcee
Q psy4869 1368 ----------ST----LIATGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1432 (2435)
Q Consensus 1368 ----------g~----~L~sGg~Dg~V~iwdl~~gk~~~~~~-~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~ 1432 (2435)
.. .+|+|+.|+.|.||.....+.+.... -.+..|..++|+|||..|..++.||.|.+.++++.+.
T Consensus 280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred cccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 11 68899999999999998877765543 2355899999999999999999999999999997544
Q ss_pred EE
Q psy4869 1433 IV 1434 (2435)
Q Consensus 1433 l~ 1434 (2435)
=.
T Consensus 360 G~ 361 (942)
T KOG0973|consen 360 GV 361 (942)
T ss_pred Cc
Confidence 33
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=259.38 Aligned_cols=275 Identities=27% Similarity=0.464 Sum_probs=236.5
Q ss_pred CCCCEEEEEeCCCeEEEEecCCcee-----eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC--ceEEEEe
Q psy4869 372 PDGQYIASSGYDRQIFIWSVYGECE-----NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG--QRIKKMK 444 (2435)
Q Consensus 372 pdg~~Lasgs~Dg~I~iwd~~~~~~-----~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg--~~v~~l~ 444 (2435)
|.++||++||.||.|++|++..... ....++.|...|++++...+++.|+++|.|-+|++|+...+ -++..+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 4678899999999999999864322 35677889999999999999999999999999999999877 5677889
Q ss_pred ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc--eEee----------cCcccEEEEEECCCCCEEEEEecCCe
Q psy4869 445 GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ--AVSM----------NNTYQVTSVAFNDTAECVLTGGIDND 512 (2435)
Q Consensus 445 ~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~--~~~~----------~~~~~v~sv~~sp~g~~l~sgs~dg~ 512 (2435)
.|.+.|.++++......++|+|+-|+.|.+||++.+-. +..+ .++.+|++++-++.|..|++|+..+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 99999999999777779999999999999999997622 2211 35678999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCC
Q psy4869 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592 (2435)
Q Consensus 513 V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spd 592 (2435)
|++||.++++.+..++||++.|.++-.++||+.++++|.||+|++||++ ..+|+.++..|. ..+..+.-+|+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~----e~VWaL~~~~s 266 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHK----EGVWALQSSPS 266 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc----ccceeeeEEecc----CceEEEeeCCC
Confidence 9999999999999999999999999999999999999999999999998 689999998886 35888888899
Q ss_pred CCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCC
Q psy4869 593 GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 593 g~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~ 654 (2435)
=.++++|+.||.|..=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|....
T Consensus 267 f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 267 FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 99999999999999999998644333334556677777776555557788899999998763
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=270.33 Aligned_cols=321 Identities=25% Similarity=0.342 Sum_probs=244.1
Q ss_pred ccc-cceeEEEEecCCCCCCCcCCcceEEEEEe--CCCeEEEEEcccccccccccccccccccccceeeeeeccccccCC
Q psy4869 965 AHS-QELWSVAMLPDQFNPNVYLPLQIQVVTGG--GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1041 (2435)
Q Consensus 965 ~h~-~~V~sv~~s~d~~~~~~~~p~~~~l~sgs--~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1041 (2435)
.|. ..|.+|+.+|++ .+|++|| .||.+++|+.+..- ++..+. ...+...-+....|.+
T Consensus 10 ~H~~~~IfSIdv~pdg----------~~~aTgGq~~d~~~~iW~~~~vl--~~~~~~-------~~~l~k~l~~m~~h~~ 70 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDG----------VKFATGGQVLDGGIVIWSQDPVL--DEKEEK-------NENLPKHLCTMDDHDG 70 (942)
T ss_pred ccCCeeEEEEEecCCc----------eeEecCCccccccceeecccccc--chhhhh-------hcccchhheeeccccC
Confidence 444 468999999987 7999999 89999999986432 111111 1112223344556889
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcC------------------CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECC
Q psy4869 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLD------------------TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1103 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~dg~V~i~d~~------------------~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~D 1103 (2435)
.|.|+.|++||++||+|+.|+.|.||... .++....+.+|...|.+++|+|++.+|++++.|
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD 150 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence 99999999999999999999999999765 345777889999999999999999999999999
Q ss_pred CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCC
Q psy4869 1104 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD 1183 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~d 1183 (2435)
++|.+||..+.+.+.++.+|...|..+.|.|-|++|++-+.|++|++|++.+......+........-...+..+.|+||
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 99999999999999999999999999999999999999999999999998876555555422222233456889999999
Q ss_pred CCEEEEEe----CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeC---CCEEEEEECCCcEEEEECCCCceEEEEeeCC
Q psy4869 1184 STLIATGS----GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK---THYFFTTSKDGRVKQWDADNFERIVTLHFNP 1256 (2435)
Q Consensus 1184 g~~l~sgs----~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd---~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~ 1256 (2435)
|.+|++.- .-..+.|.+-.+.+.-..+-+|.+++.+++|+|. .+.- +|+..-
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~-----ng~~~~---------------- 289 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK-----NGTSTQ---------------- 289 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc-----cCCccC----------------
Confidence 99999864 2356888888888877888899999999999982 1100 111000
Q ss_pred cccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCC
Q psy4869 1257 NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDT 1336 (2435)
Q Consensus 1257 ~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG 1336 (2435)
..-....+++|+.|+.|.||.-.... |+..-..-....|.+++|+|||-.|.++|.||
T Consensus 290 --~~~~y~i~AvgSqDrSlSVW~T~~~R--------------------Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DG 347 (942)
T KOG0973|consen 290 --PNCYYCIAAVGSQDRSLSVWNTALPR--------------------PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG 347 (942)
T ss_pred --CCcceEEEEEecCCccEEEEecCCCC--------------------chhhhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence 00001246777778888888643111 11111122356899999999999999999999
Q ss_pred eEEEEEcccce
Q psy4869 1337 TVKIFFLDTFK 1347 (2435)
Q Consensus 1337 ~V~v~d~~~~k 1347 (2435)
.|.++.++..+
T Consensus 348 tV~~i~Fee~E 358 (942)
T KOG0973|consen 348 TVALIHFEEKE 358 (942)
T ss_pred eEEEEEcchHH
Confidence 99999998744
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=246.01 Aligned_cols=291 Identities=23% Similarity=0.366 Sum_probs=246.0
Q ss_pred eEEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1151 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg-~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iw 1151 (2435)
.++..+.||...|.+++=+|.. ..+++|+.||.|++||+....+..++++|.+.|..+++.. ..+++++.|++|+.|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 3455678899999999999977 7899999999999999999999999999999999999985 678999999999999
Q ss_pred eCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeC-CCEEE
Q psy4869 1152 DADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK-THYFF 1230 (2435)
Q Consensus 1152 D~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd-~~~lv 1230 (2435)
.+.-. ....+ .....+..+..+..++.++++|.+ |.|||.+-..++..+.-..+.|.++.|+|- ...|+
T Consensus 135 k~~~~-p~~ti-------lg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 135 KIDGP-PLHTI-------LGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eccCC-cceee-------eccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 98763 22222 346778888888778888888764 999999988899999888999999999994 45566
Q ss_pred EEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1231 sgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+++.|+.|.+||+|+..++..+.
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi--------------------------------------------------------- 227 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVI--------------------------------------------------------- 227 (433)
T ss_pred eeccCCceEEEecccCCccceee---------------------------------------------------------
Confidence 66799999999999887765432
Q ss_pred ccccccEEEEEecCCcceeEEeecCCeEEEEEccc-ceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT-FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1389 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~-~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk 1389 (2435)
+....+.|+|+|.+-.|++|+.|..++.||+.. ..++..+.+|..+|.+++|||.|+-+++|+.|..|+||.+..+.
T Consensus 228 --~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 228 --LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred --eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 123456789999999999999999999999977 45788888999999999999999999999999999999998775
Q ss_pred eEEEecccc---cceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEEE
Q psy4869 1390 CHKSLLAHE---DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436 (2435)
Q Consensus 1390 ~~~~~~~h~---~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~~ 1436 (2435)
--.. -|. .-|.+|.|+.|..+++||++|+.|++|.....+++..+
T Consensus 306 SRdi--YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 306 SRDI--YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred chhh--hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 3211 221 35999999999999999999999999999998877654
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=213.49 Aligned_cols=247 Identities=24% Similarity=0.476 Sum_probs=206.1
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCcee----eEEEeeCCCCCeeEEEEccC----CCEEEEEeC-CCeE
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE----NIGVMSGHTGAVMDLKFSTD----GCHIFTCST-DQTL 429 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~----~~~~l~~h~~~V~~l~~s~d----g~~L~s~s~-Dg~I 429 (2435)
+.|.+.|+|.+|+|+|++||+|+.|..|++...+.... .-..+..|.+.|++++|-.+ +..|++++. |-.|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 47999999999999999999999999999987653221 23467789999999999753 446666554 6678
Q ss_pred EEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecC--------cccEEEEEECCCC
Q psy4869 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN--------TYQVTSVAFNDTA 501 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~--------~~~v~sv~~sp~g 501 (2435)
++-|-.+|+..+.+.+|...|.++ ...+..++++|+.|.+|++||++-..++..+.. ...|.+++..|.|
T Consensus 166 y~tdc~~g~~~~a~sghtghilal--yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILAL--YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEE--EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence 888999999999999999988765 334457899999999999999998888777631 2468999999999
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccc
Q psy4869 502 ECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE 581 (2435)
Q Consensus 502 ~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~ 581 (2435)
++|++|..|....+||++.+++++.+..|...|.|+.|+|...++++++.|..|++-|+...-...-++.....|.
T Consensus 244 rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehk---- 319 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHK---- 319 (350)
T ss_pred ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEecc----
Confidence 9999999999999999999999999999999999999999999999999999999999974322223333444443
Q ss_pred cCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 582 KNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 582 ~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
..+..|.|+|..--+++.+.|.++.+|-+.
T Consensus 320 dk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CceEEEEecCccceeeeccCcceEEEeccC
Confidence 467889999998889999999999999753
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=231.90 Aligned_cols=277 Identities=19% Similarity=0.276 Sum_probs=229.7
Q ss_pred ccCCcEEEEEECC-CCCEEEEEeCCCeEEEEecCCc-eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC
Q psy4869 360 GHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGE-CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG 437 (2435)
Q Consensus 360 gH~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~-~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg 437 (2435)
.-.+.|.+|+|+| ...+++.|+.||+||+|++... ...-.....|.++|.+++|+.||..+++++.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567899999999 5667779999999999999763 2223455679999999999999999999999999999999999
Q ss_pred ceEEEEeccCccccccCcccCCC-eEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEE
Q psy4869 438 QRIKKMKGHSTFVNSCDPVRRGQ-LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMW 516 (2435)
Q Consensus 438 ~~v~~l~~h~~~v~sv~~~~~~~-~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lw 516 (2435)
+ +..+..|...|..|.|.+... .+|++||.|.+|++||+|...++..+..+.+++++..- ...++++..+..|.+|
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIAVY 181 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEEEE
Confidence 5 567788999999999987654 47899999999999999999999999988888887653 3578899999999999
Q ss_pred ECCCCcEEE-EEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccccc-----ccCeEEEEE
Q psy4869 517 DLRTNSVVQ-KLR-GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF-----EKNLLRCAW 589 (2435)
Q Consensus 517 D~~s~~~v~-~l~-~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~-----~~~i~~v~~ 589 (2435)
+++++.... .++ .-+-.+.||+..+|....+.|+-+|++.|..+....+ +.-..++.|+... -..|.+++|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEe
Confidence 998764322 221 2334689999999998889999999999999985433 3334566665311 235778999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEE
Q psy4869 590 SVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSA 641 (2435)
Q Consensus 590 spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasg 641 (2435)
+|.-..|++.+.||++.+||......+...+.|..+|++++|+.+|.++|-+
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999999999888888888999999999999999877654
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=229.33 Aligned_cols=330 Identities=20% Similarity=0.339 Sum_probs=247.1
Q ss_pred ceeeEEEeecceeeeeeCCCCceEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEe
Q psy4869 4 TKQYLRYVHEGSFNIIASPNCNVVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLS 82 (2435)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~ 82 (2435)
+.+-|+..-.+..-++-+|.|.|+++..++.+|||+++| +||.|.+||+++...... +..... + .|.++
T Consensus 24 ~rRil~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~------s~li~k-~---~c~v~ 93 (397)
T KOG4283|consen 24 QRRILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA------SGLIAK-H---KCIVA 93 (397)
T ss_pred hhhhheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh------ccceeh-e---eeecc
Confidence 355677888889999999999999999999999999998 999999999986542220 111110 0 00000
Q ss_pred ecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCc
Q psy4869 83 PNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGV 161 (2435)
Q Consensus 83 ~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~ 161 (2435)
..--.+|+-.|.++.|-| |..++.++|.|.+++|||..+.+....|+ ..+.
T Consensus 94 ---------------------------~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~ 145 (397)
T KOG4283|consen 94 ---------------------------KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGK 145 (397)
T ss_pred ---------------------------ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCce
Confidence 111236999999999999 55789999999999999999988777764 4567
Q ss_pred EEEEEEeecCC-CcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCe-EEEeeCCCcEEEEEcCCCC-Cc
Q psy4869 162 ITDIRFMSQPG-HHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSY-LISGSNDAELKVWNVRDRS-DI 238 (2435)
Q Consensus 162 V~~v~~~~~~~-~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~-l~s~s~Dg~v~vwdl~~~~-~~ 238 (2435)
|.+-+|+|-.- +.+++.|.+|-+|++.|+.+|.+-+++.+|.+.|.+|.|+|..++ |++|+.||.|++||++... ++
T Consensus 146 VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf 225 (397)
T KOG4283|consen 146 VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF 225 (397)
T ss_pred eehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee
Confidence 88888887544 567788889999999999999999999999999999999999886 6799999999999998531 10
Q ss_pred cccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhh
Q psy4869 239 DTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTR 318 (2435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (2435)
.
T Consensus 226 ~------------------------------------------------------------------------------- 226 (397)
T KOG4283|consen 226 R------------------------------------------------------------------------------- 226 (397)
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hcccCCCeEEEEeCccceeeeeecccccCccccccce-eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceee
Q psy4869 319 SMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPI-MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECEN 397 (2435)
Q Consensus 319 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~-~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~ 397 (2435)
+.|..+.. ..|+ ..-..|.+.|+.++|..+|.++++.+.|.++++|+...+...
T Consensus 227 ----------~lD~hn~k---------------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 227 ----------VLDQHNTK---------------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred ----------EeecccCc---------------cCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc
Confidence 00000000 0011 113479999999999999999999999999999998755433
Q ss_pred EEEee--CCCC---CeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeE
Q psy4869 398 IGVMS--GHTG---AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTV 472 (2435)
Q Consensus 398 ~~~l~--~h~~---~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I 472 (2435)
+..+. .|+. .-..+. +-+...++-.-.++.+.++++-.|..++.++.|...++++.+.++-+ ...+|..|+.|
T Consensus 282 l~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq-~~~tg~~d~ni 359 (397)
T KOG4283|consen 282 LREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFE-QCFTGDMNGNI 359 (397)
T ss_pred ccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchh-hhhccccCCcc
Confidence 22221 1211 111122 33455566666679999999999999999999999999888877753 35589999999
Q ss_pred EEEeC
Q psy4869 473 KVWDP 477 (2435)
Q Consensus 473 ~vwD~ 477 (2435)
..|-+
T Consensus 360 ~~w~p 364 (397)
T KOG4283|consen 360 YMWSP 364 (397)
T ss_pred ccccc
Confidence 99976
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-23 Score=264.64 Aligned_cols=269 Identities=18% Similarity=0.263 Sum_probs=219.8
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceee------------EEEeeCCCCCeeEEEEcc-CCCEEEEEeCCC
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECEN------------IGVMSGHTGAVMDLKFST-DGCHIFTCSTDQ 427 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~------------~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg 427 (2435)
|...|....+++++..+++++.+..+..|+..++... ...+.+|.+.|.+++|+| ++++|++++.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4556667777888777788888888888876543211 124678999999999999 889999999999
Q ss_pred eEEEEECCCC-------ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECC
Q psy4869 428 TLAVWDLEKG-------QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFND 499 (2435)
Q Consensus 428 ~I~vwd~~tg-------~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp 499 (2435)
.|++||+.++ +++..+.+|...|.+++|+|.+..+|++++.|+.|++||+++++....+. |...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765 35778899999999999999887899999999999999999988777764 778899999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEEecCCCC-EEEEEEcCCCCEEEEEE----CCCcEEEEEcCCCCCCCceEEEEe
Q psy4869 500 TAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDT-VTGLSLSPDGSYILSNA----MDNTVRIWDIRPYVPGERCVKVMS 574 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~-V~~i~~spdg~~las~s----~Dg~I~lWdl~~~~~~~~~v~~~~ 574 (2435)
+|++|++|+.||.|++||+++++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||++.. ..++....
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~---~~p~~~~~ 255 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM---ASPYSTVD 255 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC---CCceeEec
Confidence 9999999999999999999999999999999875 45788999988888755 4899999999853 23333333
Q ss_pred CcccccccCeEEEEEcCCCCEEEEec-CCCeEEEEECCCCcEEEEecC-CCCCeeEEEEcCCC
Q psy4869 575 GHQHNFEKNLLRCAWSVSGLYVTAGS-ADKCVYIWDTTTRRIAYKLPG-HNGSVNDVQFHPKE 635 (2435)
Q Consensus 575 ~h~~~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iwd~~s~~~~~~l~~-h~~~V~~l~fspd~ 635 (2435)
.+. ...+....|++++++|++|+ .|+.|++||+.+++++..... +..++..++|.|..
T Consensus 256 ~d~---~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 256 LDQ---SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred cCC---CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 222 12456678999999999887 599999999999998776644 55678899999864
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=258.52 Aligned_cols=367 Identities=22% Similarity=0.339 Sum_probs=281.7
Q ss_pred CCCCEE---EEEEcCC-CCEEEEEeCCCCEEEEEccCCe------eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcE
Q psy4869 116 HKSAIT---VIQYDPL-GHRLATGSKDTDIVLWDVVAEC------GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFV 185 (2435)
Q Consensus 116 H~~~V~---~l~f~p~-g~~laSgs~Dg~I~iWd~~~~~------~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I 185 (2435)
|...|+ ++..+.. +++|.|||.||.|++|++.... .+..+..|...|.++... .++..|+|+|.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~--~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC--GNGKTLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh--cCCCceEEecCCceE
Confidence 566666 6666654 5679999999999999986533 266788999999999986 445579999999999
Q ss_pred EEEeccCC--ccccccccccceEEEEEE-EeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCc
Q psy4869 186 KIWDADTG--DCFKTMAAHLTEVWGVCV-MREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDL 262 (2435)
Q Consensus 186 ~iWd~~tg--~~~~~~~~h~~~V~~l~~-~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (2435)
++|+...+ -|+.++..|.+-|.|+++ .++...+++||-|+.|.+||+..+... +..
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~-------l~~-------------- 156 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT-------LVA-------------- 156 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh-------hhh--------------
Confidence 99999888 689999999999999999 778889999999999999999865210 000
Q ss_pred eeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeec
Q psy4869 263 TVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQ 342 (2435)
Q Consensus 263 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~ 342 (2435)
. .+.+
T Consensus 157 --------------s----------------------------------------------~n~~--------------- 161 (735)
T KOG0308|consen 157 --------------S----------------------------------------------FNNV--------------- 161 (735)
T ss_pred --------------h----------------------------------------------cccc---------------
Confidence 0 0000
Q ss_pred ccccCccccccceeEe-cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEE
Q psy4869 343 KDVGRTSNLFAPIMLL-EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIF 421 (2435)
Q Consensus 343 ~~~~~~~~~~~p~~~l-~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~ 421 (2435)
+...+ .||...|++++.++.|..|++|+..+.|++||.+... .+..+.+|...|+.+..+.||.+++
T Consensus 162 -----------t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~-kimkLrGHTdNVr~ll~~dDGt~~l 229 (735)
T KOG0308|consen 162 -----------TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK-KIMKLRGHTDNVRVLLVNDDGTRLL 229 (735)
T ss_pred -----------ccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc-ceeeeeccccceEEEEEcCCCCeEe
Confidence 00011 2888999999999999999999999999999988654 5567889999999999999999999
Q ss_pred EEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC-cceEeecCcccEEEEEECCC
Q psy4869 422 TCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK-NQAVSMNNTYQVTSVAFNDT 500 (2435)
Q Consensus 422 s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~-~~~~~~~~~~~v~sv~~sp~ 500 (2435)
+++.||+|++||+...+++.++..|...|+++...+.= ..+.+|+.|+.|..=|+++. +....+....+|..+..+.+
T Consensus 230 s~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~ 308 (735)
T KOG0308|consen 230 SASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEH 308 (735)
T ss_pred ecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccc
Confidence 99999999999999999999999999999998877543 56889999999999999984 44555577788888888876
Q ss_pred CCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccccc
Q psy4869 501 AECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF 580 (2435)
Q Consensus 501 g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~ 580 (2435)
.+-+-++..|+.|.-|..+-.- .+++.|.... -+.|....+++... .+-....|.
T Consensus 309 ~~~~WvtTtds~I~rW~~~~~~---------------~l~~s~~~~~-~~T~~~~~~~~~~~-----tp~~vi~Gg---- 363 (735)
T KOG0308|consen 309 DNSVWVTTTDSSIKRWKLEPDI---------------ALSVSGDLDF-FSTDSNNHSCDLTN-----TPDSVIPGG---- 363 (735)
T ss_pred cCCceeeeccccceecCCcccc---------------ccccCCCCCc-ccccCCCccccccC-----CCceeccCc----
Confidence 6667888889999888654221 3333333333 22333333333321 122223322
Q ss_pred ccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEe
Q psy4869 581 EKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKL 619 (2435)
Q Consensus 581 ~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l 619 (2435)
..+...+.--|.+++++=...|.+.+||+-..+.+..+
T Consensus 364 -~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~ 401 (735)
T KOG0308|consen 364 -AAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDF 401 (735)
T ss_pred -hhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhc
Confidence 14555566668899999999999999999877666655
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=254.30 Aligned_cols=282 Identities=24% Similarity=0.466 Sum_probs=239.9
Q ss_pred CeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCee--EEEEecCCCcEEE-EEEeecCCCcEEEEEeCCCc
Q psy4869 108 DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG--LHRLSGHKGVITD-IRFMSQPGHHFVVSSAKDTF 184 (2435)
Q Consensus 108 ~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~--~~~l~gH~~~V~~-v~~~~~~~~~~l~S~s~Dg~ 184 (2435)
+.-+++.||+..|..+++.+ +..+++||.||++++|+-...+. .+.+.+|.+.|.. ++|.+ .++-.|+.|+.|++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccce
Confidence 35578999999999998874 55899999999999999755553 3567899999988 99976 34446899999999
Q ss_pred EEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCcee
Q psy4869 185 VKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTV 264 (2435)
Q Consensus 185 I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 264 (2435)
|.+|.+.+++.+.++.+|...|.++....++. +++||.|.++++|.+...
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l----------------------------- 132 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL----------------------------- 132 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh-----------------------------
Confidence 99999999999999999999999998877776 999999999999965410
Q ss_pred eeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeeccc
Q psy4869 265 SKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKD 344 (2435)
Q Consensus 265 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~ 344 (2435)
T Consensus 133 -------------------------------------------------------------------------------- 132 (745)
T KOG0301|consen 133 -------------------------------------------------------------------------------- 132 (745)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe
Q psy4869 345 VGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS 424 (2435)
Q Consensus 345 ~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 424 (2435)
...+.||...|.++++-|++ .+++|+.|..|++|.-. ..+..+.+|...|+.+++-+++ .|++|+
T Consensus 133 ----------~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScs 197 (745)
T KOG0301|consen 133 ----------VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCS 197 (745)
T ss_pred ----------hcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeec
Confidence 01256899999999999988 88999999999999752 4567889999999999998764 689999
Q ss_pred CCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcc-cEEEEEECCCCCE
Q psy4869 425 TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTY-QVTSVAFNDTAEC 503 (2435)
Q Consensus 425 ~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~-~v~sv~~sp~g~~ 503 (2435)
.||.|++|++ +|+.+.++.+|...+.++...+.+ ..+++++.|+++++|+.. ++...+.++. .+.++.+-++|+
T Consensus 198 NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD- 272 (745)
T KOG0301|consen 198 NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD- 272 (745)
T ss_pred CCceEEEEec-cCceeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-
Confidence 9999999999 899999999999999999854443 588999999999999976 6677776665 789999888887
Q ss_pred EEEEecCCeEEEEECCCC
Q psy4869 504 VLTGGIDNDIKMWDLRTN 521 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s~ 521 (2435)
|++|+.||.||||-.+..
T Consensus 273 Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 273 IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEeccCceEEEEEeccc
Confidence 678889999999987744
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=256.28 Aligned_cols=276 Identities=24% Similarity=0.338 Sum_probs=243.9
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec-c
Q psy4869 1045 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA-H 1123 (2435)
Q Consensus 1045 ~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~-h 1123 (2435)
-+.|+ ..+.||+|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 45677 566888887 56799999999887666666688999999999999999999999999999999999999998 9
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC
Q psy4869 1124 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1203 (2435)
Q Consensus 1124 ~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t 1203 (2435)
...|.+++|. +..+.+|+.|+.|..+|++..+.... ...+|...|..+.|++|+.++|+|+.|+.+.|||...
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-----~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-----TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-----hhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence 9999999997 77899999999999999998765544 1458999999999999999999999999999999988
Q ss_pred CceeeEeeccCCCEEEEEEee-CCCEEEEEE--CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEc
Q psy4869 1204 GDCHKSLLAHEDSVTGVTFVP-KTHYFFTTS--KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQL 1280 (2435)
Q Consensus 1204 ~~~~~~~~~h~~~V~~i~~sp-d~~~lvsgs--~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl 1280 (2435)
.+.+..+..|.+.|..++|+| ....|++|+ .|+.|++||..+...+..+
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v---------------------------- 384 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV---------------------------- 384 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----------------------------
Confidence 888899999999999999999 677888876 6888999988766554322
Q ss_pred ccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEE--eecCCeEEEEEcccceEEEEecCCCCC
Q psy4869 1281 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV--SLLDTTVKIFFLDTFKFFISLYGHKLP 1358 (2435)
Q Consensus 1281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lav--gs~dG~V~v~d~~~~k~i~~~~~h~~~ 1358 (2435)
....+|..+.|++..+.|++ |..++.|.||++.+.+.+..+.+|...
T Consensus 385 -------------------------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R 433 (484)
T KOG0305|consen 385 -------------------------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR 433 (484)
T ss_pred -------------------------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcce
Confidence 23578999999999988776 567889999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q psy4869 1359 VLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1388 (2435)
Q Consensus 1359 V~~la~spdg~~L~sGg~Dg~V~iwdl~~g 1388 (2435)
|..++++|||..|++|+.|.++++|++-..
T Consensus 434 Vl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 434 VLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999999998764
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-24 Score=246.93 Aligned_cols=282 Identities=21% Similarity=0.234 Sum_probs=244.0
Q ss_pred cCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCce
Q psy4869 1039 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK--FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1116 (2435)
Q Consensus 1039 ~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~--~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~ 1116 (2435)
+.+.+..+.|-++...|++|+.|..|++|++...+ .+.++.|..+.|++++|.++++++++++.|+.+++|++...+.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~ 253 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL 253 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh
Confidence 56788999999999999999999999999987666 7778888999999999999999999999999999999999999
Q ss_pred eEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcE
Q psy4869 1117 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196 (2435)
Q Consensus 1117 ~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 1196 (2435)
..++.+|.+.|+++.|......+++|+.|.+|++||+....+...+- ....+++|+.+ ...+++|..|++|
T Consensus 254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-------~~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-------PGSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-------ccccccceEec--ceeeeecccccce
Confidence 99999999999999999877779999999999999999866555442 34556666665 5678899999999
Q ss_pred EEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEE
Q psy4869 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVK 1276 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~ 1276 (2435)
|+||.++..+...+..|. .|+++..++++..|++++.|..+.+.|+++.+....+....
T Consensus 325 RfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g-------------------- 383 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG-------------------- 383 (459)
T ss_pred EEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc--------------------
Confidence 999999999888886655 99999999999999999999999999999876554432111
Q ss_pred EEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCC
Q psy4869 1277 LWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK 1356 (2435)
Q Consensus 1277 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~ 1356 (2435)
......+..+.|||++.|+|+||.||.|+||++.++++...+....
T Consensus 384 ----------------------------------~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 384 ----------------------------------FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred ----------------------------------cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence 1122336678999999999999999999999999999888877544
Q ss_pred C--CeEEEEEecCCCEEEEEeCCCcEEEEe
Q psy4869 1357 L--PVLSLDMSYDSTLIATGSGDRTVKVWG 1384 (2435)
Q Consensus 1357 ~--~V~~la~spdg~~L~sGg~Dg~V~iwd 1384 (2435)
. .|++++|+|.|..|++++.++.+.+|.
T Consensus 430 s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 430 SNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 3 599999999999999999999999983
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=264.63 Aligned_cols=248 Identities=24% Similarity=0.377 Sum_probs=209.5
Q ss_pred Eee-CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC------------------------------------------
Q psy4869 400 VMS-GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK------------------------------------------ 436 (2435)
Q Consensus 400 ~l~-~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t------------------------------------------ 436 (2435)
.+. .|.+.|+++.|++||++||+|+.|+.|+||.+..
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 8999999999999999999999999999998643
Q ss_pred ------------------CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEEC
Q psy4869 437 ------------------GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFN 498 (2435)
Q Consensus 437 ------------------g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~s 498 (2435)
.++++.++||.+.|.++.|+.++ +|++++.|.+||+|++....++..+.|...|+||+|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 02345667899999999998874 8889999999999999999999999999999999999
Q ss_pred C-CCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeC--
Q psy4869 499 D-TAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG-- 575 (2435)
Q Consensus 499 p-~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~-- 575 (2435)
| |.+||++|+-||.|+||++...+.+.-...+ +-|++++|.|||+..+.|+.+|.+++|+.+.. +.+..+.-
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l----k~~~~~~I~~ 493 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL----KLVSDFHIRL 493 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCC----eEEEeeeEee
Confidence 9 7899999999999999999988776655544 78999999999999999999999999999843 33332221
Q ss_pred --cccccccCeEEEEEcCCC-CEEEEecCCCeEEEEECCCCcEEEEecCCCC--CeeEEEEcCCCCEEEEEECCCcEEEe
Q psy4869 576 --HQHNFEKNLLRCAWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNG--SVNDVQFHPKEPIIMSASSDKTIYLG 650 (2435)
Q Consensus 576 --h~~~~~~~i~~v~~spdg-~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~--~V~~l~fspd~~~Lasgs~Dg~I~vW 650 (2435)
........|+.+.|.|.. ..|++.+.|..|||||.+..+++..++|+.. .-....|..||++|+++++|..|++|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 111222368999998744 3588889999999999999999999998543 34577899999999999999999999
Q ss_pred cCCC
Q psy4869 651 ESPL 654 (2435)
Q Consensus 651 d~~~ 654 (2435)
+++.
T Consensus 574 ~~~~ 577 (712)
T KOG0283|consen 574 KNDS 577 (712)
T ss_pred eCCC
Confidence 9973
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=254.95 Aligned_cols=271 Identities=18% Similarity=0.360 Sum_probs=233.4
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEec-c
Q psy4869 368 SKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKG-H 446 (2435)
Q Consensus 368 l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~-h 446 (2435)
++|+ ..+.||.| ....|.+|+...+.. ......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |
T Consensus 183 ldWs-s~n~laVa-lg~~vylW~~~s~~v-~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWS-SANVLAVA-LGQSVYLWSASSGSV-TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred hhcc-cCCeEEEE-ecceEEEEecCCCce-EEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 5677 45667766 345799999776542 222233389999999999999999999999999999999999999999 9
Q ss_pred CccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe-e-cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Q psy4869 447 STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS-M-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVV 524 (2435)
Q Consensus 447 ~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~-~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v 524 (2435)
...|.+++|. ...+.+|+.|+.|..+|++..+.... + .|...|..++|++|++++|+|+.|+.+.|||....+++
T Consensus 260 ~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 9999999997 46789999999999999998776655 3 58889999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCC-CCEEEEEE--CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe--
Q psy4869 525 QKLRGHSDTVTGLSLSPD-GSYILSNA--MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG-- 599 (2435)
Q Consensus 525 ~~l~~h~~~V~~i~~spd-g~~las~s--~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg-- 599 (2435)
..+..|.+.|..++|+|- ...||+|+ .|++|++||.. .+..+..... ..+|.++.|++..+-|+++
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~----~g~~i~~vdt-----gsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN----TGARIDSVDT-----GSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC----CCcEeccccc-----CCceeeEEEcCCCCEEEEecC
Confidence 999999999999999994 67888865 69999999998 3455544432 2489999999998766664
Q ss_pred cCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 600 SADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 600 s~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
-.++.|.||+..+.+++..+.+|...|-.++++|||..|++|+.|.++++|++-
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 457899999999999999999999999999999999999999999999999985
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=243.57 Aligned_cols=239 Identities=23% Similarity=0.409 Sum_probs=208.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEECCCCceE
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD-GCHIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
.+.|+++.|-.||.+||.|+..|.|+|||... ...+..+.+|..+|..+.|+|+ +..+++|++|+.+++||+.++...
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE
Confidence 35688899999999999999999999999543 3345667899999999999994 566778889999999999998877
Q ss_pred EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC-cceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 441 KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK-NQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 441 ~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~-~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
..+.+|.+.|.+.+|+|..++++++|++||.|++||++.. ..+..+.|..+|..+.+-|.|..|++++ ...|++||+-
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~ 225 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLT 225 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEec
Confidence 7899999999999999999999999999999999999987 7888899999999999999999999886 4689999999
Q ss_pred CC-cEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEE
Q psy4869 520 TN-SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA 598 (2435)
Q Consensus 520 s~-~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Las 598 (2435)
+| +.+..+..|...|+|+++..++..|++++.|+.+++||+.+ -+.+..+. ..++|.+++.+|+++.++.
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~----~Kvv~s~~-----~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN----YKVVHSWK-----YPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc----eEEEEeee-----cccceeeEEecCCCceEEE
Confidence 54 55666666999999999999999999999999999999763 34444443 3468999999999999999
Q ss_pred ecCCCeEEEEECC
Q psy4869 599 GSADKCVYIWDTT 611 (2435)
Q Consensus 599 gs~Dg~V~iwd~~ 611 (2435)
|..||.+.+-+..
T Consensus 297 GmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 297 GMSNGLVSIRRRE 309 (487)
T ss_pred ecccceeeeehhh
Confidence 9999988777543
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=231.18 Aligned_cols=290 Identities=20% Similarity=0.429 Sum_probs=243.7
Q ss_pred ecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEE----
Q psy4869 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWD---- 145 (2435)
Q Consensus 70 ~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd---- 145 (2435)
.+.||...|-.++-..-...+..++.|...+||.++++.++..+.||.+.|+|++|++.+.++++||.|++..||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~ 222 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVN 222 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhc
Confidence 4557777666666666667889999999999999999999999999999999999999999999999999999997
Q ss_pred --ccC----------------------------------CeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEe
Q psy4869 146 --VVA----------------------------------ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189 (2435)
Q Consensus 146 --~~~----------------------------------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd 189 (2435)
++. ..++..|.||.+.|.+..|. .++...+++|.|.+-.+||
T Consensus 223 ~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL--~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 223 WEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL--AGGQQMVTASWDRTANLWD 300 (481)
T ss_pred CcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh--cCcceeeeeeccccceeee
Confidence 211 01356689999999999997 4566789999999999999
Q ss_pred ccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEE
Q psy4869 190 ADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEV 269 (2435)
Q Consensus 190 ~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 269 (2435)
+++|+.+..+.+|..+.+.++-+|..+++++.+.|.+.++||.+.. +
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I------------------------------- 347 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--I------------------------------- 347 (481)
T ss_pred eccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--c-------------------------------
Confidence 9999999999999999999999999999999999999999998721 0
Q ss_pred EeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCcc
Q psy4869 270 QIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTS 349 (2435)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 349 (2435)
T Consensus 348 -------------------------------------------------------------------------------- 347 (481)
T KOG0300|consen 348 -------------------------------------------------------------------------------- 347 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeE
Q psy4869 350 NLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTL 429 (2435)
Q Consensus 350 ~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I 429 (2435)
..+.+|+||.+.|+++.|..+ ..+++|+.|.+|+|||+++...++..+. -..+++.++.+..+..|+.-.+++.|
T Consensus 348 ---~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqv 422 (481)
T KOG0300|consen 348 ---QSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQV 422 (481)
T ss_pred ---ceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceE
Confidence 012367899999999999864 5689999999999999998777766655 35789999999877788888888999
Q ss_pred EEEECCCCceEEEE-----eccCccccccCcccCCCe-EEEEEeCCCeEEEEeCCCC
Q psy4869 430 AVWDLEKGQRIKKM-----KGHSTFVNSCDPVRRGQL-LIASGSDDCTVKVWDPRKK 480 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l-----~~h~~~v~sv~~~~~~~~-llasgs~Dg~I~vwD~~~~ 480 (2435)
++||+. |..+..+ ++|...|.+++|....+. -+.+++.|..+.-|.+...
T Consensus 423 RlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 423 RLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 999995 4444333 589999999999776543 4678999999999987654
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-23 Score=237.74 Aligned_cols=281 Identities=24% Similarity=0.379 Sum_probs=246.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q psy4869 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK 442 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~ 442 (2435)
..|+++...|....+++|+.|..+.++|...+ +.+..+.||...|..+.|+++...+++++.|..|+||..........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 56888888888789999999999999997654 45678899999999999999999999999999999999988777788
Q ss_pred EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCc---ccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT---YQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 443 l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~---~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
...|...|+.+..+|.+. +|++++.|++..+.|++++..+....++ -.+++.+|||||.+|.+|..||.|++||+.
T Consensus 299 ~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 889999999999999884 5678999999999999999988877654 458999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe
Q psy4869 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG 599 (2435)
Q Consensus 520 s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg 599 (2435)
++..+..|.+|.++|..|+|+-+|-+|+++..|+.|++||+|.. +..+++.-.. ...+.++.|.+.|.||+.+
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl----~n~kt~~l~~---~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL----KNFKTIQLDE---KKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh----cccceeeccc---cccceeEEEcCCCCeEEee
Confidence 99999999999999999999999999999999999999999953 3333443222 2368899999999999999
Q ss_pred cCCCeEEEEECC--CCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 600 SADKCVYIWDTT--TRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 600 s~Dg~V~iwd~~--s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
+.|=.|++++.. +...+..+..|.+..+++.|..+..+++++|.|..++++.+
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 877777777743 56788888889999999999999999999999999998764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=261.31 Aligned_cols=229 Identities=18% Similarity=0.283 Sum_probs=181.3
Q ss_pred EecCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccCC-------eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCC
Q psy4869 112 TFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAE-------CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDT 183 (2435)
Q Consensus 112 ~l~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~~-------~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg 183 (2435)
.+.||++.|++++|+| ++++||+|+.|++|+|||+... .++..+.+|...|.+|+|+|.. ..+|++++.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCC
Confidence 5789999999999999 7899999999999999999764 3567889999999999999753 45899999999
Q ss_pred cEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCce
Q psy4869 184 FVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLT 263 (2435)
Q Consensus 184 ~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (2435)
+|+|||+++++.+..+.+|...|.+++|+|++.+|++++.|++|++||+++++.+
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v------------------------- 203 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV------------------------- 203 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE-------------------------
Confidence 9999999999999999999999999999999999999999999999999854210
Q ss_pred eeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecc
Q psy4869 264 VSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQK 343 (2435)
Q Consensus 264 v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~ 343 (2435)
T Consensus 204 -------------------------------------------------------------------------------- 203 (493)
T PTZ00421 204 -------------------------------------------------------------------------------- 203 (493)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccccceeEecccCCc-EEEEEECCCCCEEEEEe----CCCeEEEEecCCceeeEEEeeCC-CCCeeEEEEccCC
Q psy4869 344 DVGRTSNLFAPIMLLEGHGGE-IFCSKYHPDGQYIASSG----YDRQIFIWSVYGECENIGVMSGH-TGAVMDLKFSTDG 417 (2435)
Q Consensus 344 ~~~~~~~~~~p~~~l~gH~~~-V~~l~fspdg~~Lasgs----~Dg~I~iwd~~~~~~~~~~l~~h-~~~V~~l~~s~dg 417 (2435)
..+.+|.+. +..+.|.+++.+|++++ .|+.|++||++...........+ ...+....|++++
T Consensus 204 ------------~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 204 ------------SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT 271 (493)
T ss_pred ------------EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence 012234332 23566778777777654 47899999998654444443333 3556667889999
Q ss_pred CEEEEEe-CCCeEEEEECCCCceEEEEec-cCccccccCcccC
Q psy4869 418 CHIFTCS-TDQTLAVWDLEKGQRIKKMKG-HSTFVNSCDPVRR 458 (2435)
Q Consensus 418 ~~L~s~s-~Dg~I~vwd~~tg~~v~~l~~-h~~~v~sv~~~~~ 458 (2435)
..|++++ .|+.|++||+.+++.+..... +...+..+++.|.
T Consensus 272 ~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 9999887 499999999999887766543 3334555555554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=258.60 Aligned_cols=249 Identities=20% Similarity=0.310 Sum_probs=203.4
Q ss_pred EeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEECCCCc--------eEEEEeccCccc
Q psy4869 380 SGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD-GCHIFTCSTDQTLAVWDLEKGQ--------RIKKMKGHSTFV 450 (2435)
Q Consensus 380 gs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~vwd~~tg~--------~v~~l~~h~~~v 450 (2435)
|+.++.|++|+.... ..+..+.+|.+.|.+++|+|+ +.+|++|+.|+.|+|||+.++. ++..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 678899999997653 456778999999999999996 7899999999999999997642 345678999999
Q ss_pred cccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecC
Q psy4869 451 NSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGH 530 (2435)
Q Consensus 451 ~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h 530 (2435)
.++.|+|.+..++++++.|+.|++||+++++....+.+...|.+++|+|+|++|++++.|+.|+|||+++++.+..+.+|
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99999999988899999999999999999988777777788999999999999999999999999999999999999999
Q ss_pred CCCEEE-----EEEcCCCCEEEEEECCC----cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 531 SDTVTG-----LSLSPDGSYILSNAMDN----TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 531 ~~~V~~-----i~~spdg~~las~s~Dg----~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
.+.+.. ..|++++.+|++++.|+ +|+|||++.. ..++..+..+.. ...+......++|.++++|+.
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~---~~pl~~~~ld~~--~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT---TSALVTMSIDNA--SAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC---CCceEEEEecCC--ccceEEeeeCCCCCEEEEEEC
Confidence 986543 34568999999988774 7999999852 345554433221 122333334556999999999
Q ss_pred CCeEEEEECCCCcEEEEec--CCCCCeeEEEEcCCC
Q psy4869 602 DKCVYIWDTTTRRIAYKLP--GHNGSVNDVQFHPKE 635 (2435)
Q Consensus 602 Dg~V~iwd~~s~~~~~~l~--~h~~~V~~l~fspd~ 635 (2435)
|+.|++|++..+.+ ..+. .+..++.+++|.|+.
T Consensus 284 D~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 99999999987753 2222 256788999999975
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=246.47 Aligned_cols=280 Identities=26% Similarity=0.351 Sum_probs=233.5
Q ss_pred CCcCEEEEEEcCCCCE-EEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCccee
Q psy4869 1081 HKLPVLSLDMSYDSTL-IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1159 (2435)
Q Consensus 1081 h~~~V~sl~~spdg~~-L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~ 1159 (2435)
....|.+|+|+|...+ +++ ...-.+.+|+..+....+.+....+.+.++.|..||+++++|+..|.|++||..+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aV-t~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAV-TSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEE-ecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3468999999996643 333 33456999999888888888888899999999999999999999999999996664333
Q ss_pred EEEEEEEeecccccCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEee-CCCEEEEEECCCc
Q psy4869 1160 VTLHFFISLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGR 1237 (2435)
Q Consensus 1160 ~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp-d~~~lvsgs~Dg~ 1237 (2435)
.. +.+|+.+|..+.|+|.+ ..+++|+.|+.+++||+.+......+.+|.+.|+|.+|+| +++.+++||.||.
T Consensus 104 R~------~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 104 RQ------LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred HH------HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 33 46899999999999854 5667788889999999998887668889999999999999 5678999999999
Q ss_pred EEEEECCCC-ceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccccccc
Q psy4869 1238 VKQWDADNF-ERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1316 (2435)
Q Consensus 1238 I~vwD~~~~-~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1316 (2435)
|++||.|.. ..+.+ .+++.+
T Consensus 178 vrl~DtR~~~~~v~e-----------------------------------------------------------lnhg~p 198 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVE-----------------------------------------------------------LNHGCP 198 (487)
T ss_pred EEEEEeccCCceeEE-----------------------------------------------------------ecCCCc
Confidence 999999875 22222 234567
Q ss_pred EEEEEecCCcceeEEeecCCeEEEEEccc-ceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEec
Q psy4869 1317 VLCARVSPDSKLLAVSLLDTTVKIFFLDT-FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1395 (2435)
Q Consensus 1317 i~~ia~spdg~~lavgs~dG~V~v~d~~~-~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~ 1395 (2435)
|..+.+-|.|..+|+++ ...|+|||+-+ ++.+..+..|...|+|+++..++..|++|+-|+.|++||+.+-|.+..+.
T Consensus 199 Ve~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 199 VESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred eeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence 88888999999998875 45799999985 45666666799999999999999999999999999999999999888764
Q ss_pred ccccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1396 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1396 ~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
-.+||.+++.+|++..++.|..||.+.+=+..
T Consensus 278 -~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 278 -YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred -cccceeeEEecCCCceEEEecccceeeeehhh
Confidence 45799999999999999999999988776433
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=234.48 Aligned_cols=284 Identities=20% Similarity=0.312 Sum_probs=251.2
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l 1120 (2435)
.++.++...+....+++|+.|..+.+||...++.+..++||...|+++.++++...+++++.|-.|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46788888888789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred eccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy4869 1121 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1200 (2435)
Q Consensus 1121 ~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd 1200 (2435)
..|..+|+.+..+|.|.||++++.|++..+.|++++..+.... .....-.+++.+|+|||..|.+|..||.|+|||
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs----~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS----DETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe----eccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 8999999999999999999999999999999999998877653 112345689999999999999999999999999
Q ss_pred ccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEc
Q psy4869 1201 LDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQL 1280 (2435)
Q Consensus 1201 ~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl 1280 (2435)
+.++..+..|.+|.++|..|+|+.+|-+|+++..|+.|++||+|..+...++..
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l-------------------------- 429 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL-------------------------- 429 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec--------------------------
Confidence 999999999999999999999999999999999999999999998664433321
Q ss_pred ccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcc--cceEEEEecCCCCC
Q psy4869 1281 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLD--TFKFFISLYGHKLP 1358 (2435)
Q Consensus 1281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~--~~k~i~~~~~h~~~ 1358 (2435)
..+..+..+.|.+.|.+|+.++.+=+|++++-. .+..+..+..|.+.
T Consensus 430 -------------------------------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~ 478 (506)
T KOG0289|consen 430 -------------------------------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGL 478 (506)
T ss_pred -------------------------------cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccc
Confidence 113467889999999999999766666666533 46677888899999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeC
Q psy4869 1359 VLSLDMSYDSTLIATGSGDRTVKVWGL 1385 (2435)
Q Consensus 1359 V~~la~spdg~~L~sGg~Dg~V~iwdl 1385 (2435)
.+.+.|..+.+++++++.|..++++.+
T Consensus 479 st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 479 STGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeeecccceEEeeccchhheEEeec
Confidence 999999999999999999999988764
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=225.26 Aligned_cols=284 Identities=20% Similarity=0.337 Sum_probs=223.4
Q ss_pred eEEEEEcCCeEEEEECCCCC------------eEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEe
Q psy4869 89 QLAVAYTNGSLKTFSLDTTD------------VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLS 156 (2435)
Q Consensus 89 ~lav~~~~G~i~i~d~~~~~------------~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~ 156 (2435)
.+++|+....|.-|+++... ++-.|..|.+.|+++|.+ |.++||||.|-+|+|||++....+..+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 46777777778888776432 355678899999999997 8999999999999999999999999999
Q ss_pred cCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCC
Q psy4869 157 GHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRS 236 (2435)
Q Consensus 157 gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~ 236 (2435)
.|.+.|+++.|.+......|+||+.||.|.+|+....+++.++++|.+.|+.++.+|.+++-++.+.|+.+++||+-+++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 99999999999876655579999999999999999999999999999999999999999999999999999999987543
Q ss_pred CccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhh
Q psy4869 237 DIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELR 316 (2435)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 316 (2435)
.-. +
T Consensus 161 ~a~------------------------------------------------------v---------------------- 164 (362)
T KOG0294|consen 161 VAF------------------------------------------------------V---------------------- 164 (362)
T ss_pred cce------------------------------------------------------e----------------------
Confidence 100 0
Q ss_pred hhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCcee
Q psy4869 317 TRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE 396 (2435)
Q Consensus 317 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~ 396 (2435)
-. + .|. -+.+.|+|.|.+++.++.+ .|-||.+.....
T Consensus 165 -------------~~--------------------------L-~~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v 201 (362)
T KOG0294|consen 165 -------------LN--------------------------L-KNK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV 201 (362)
T ss_pred -------------ec--------------------------c-CCc--ceeeEEcCCCCEEEEEecc-EEEEEecccHhH
Confidence 00 0 011 1227899999999888765 688898754211
Q ss_pred eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcc-cCCCeEEEEEeCCCeEEEE
Q psy4869 397 NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPV-RRGQLLIASGSDDCTVKVW 475 (2435)
Q Consensus 397 ~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~-~~~~~llasgs~Dg~I~vw 475 (2435)
...+ .....+.++.|. ++..|++|+.|+.|.+||-+.+.+...+.+|..+|.++.+. .....+|++++.||.|++|
T Consensus 202 -~~~i-~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vW 278 (362)
T KOG0294|consen 202 -FREI-ENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVW 278 (362)
T ss_pred -hhhh-hccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEE
Confidence 1111 112446667765 56789999999999999999999999999999999998843 3344789999999999999
Q ss_pred eCCCC-----cceEeecCcccEEEEE
Q psy4869 476 DPRKK-----NQAVSMNNTYQVTSVA 496 (2435)
Q Consensus 476 D~~~~-----~~~~~~~~~~~v~sv~ 496 (2435)
|++.. ..+.......+++|+.
T Consensus 279 d~~~~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 279 DIDMETKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred EccccccCCcceeEEeecCCccceee
Confidence 99865 3333334444555544
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=238.58 Aligned_cols=293 Identities=23% Similarity=0.255 Sum_probs=232.5
Q ss_pred cCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCe----EEEEEe-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC
Q psy4869 1039 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK----FFISLY-GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1113 (2435)
Q Consensus 1039 ~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~----~~~~l~-~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t 1113 (2435)
+...|.++++.|.|..|++|+.|-.|++||+.... ..+.+. .....|.+++|++.|..|++.+.....+|+|-+.
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 35689999999999999999999999999987432 222222 2233799999999999999999999999999654
Q ss_pred CceeE------------EEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEE
Q psy4869 1114 GDCHK------------SLLAHEDSVTGVTFVPKT-HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM 1180 (2435)
Q Consensus 1114 ~~~~~------------~l~~h~~~V~~v~fsp~~-~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 1180 (2435)
...+. .-++|...+++.+|+|+. ..+++++.||++|+||+.+.+....+-..+...+..-++..++|
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence 33322 235799999999999965 58899999999999999876544333223333455678999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEccCCc---eeeEeeccCC--CEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1181 SYDSTLIATGSGDRTVKVWGLDYGD---CHKSLLAHED--SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1181 s~dg~~l~sgs~Dg~V~iwd~~t~~---~~~~~~~h~~--~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
+++|.+||+|+.||.|.+|+..... ....-.+|.. .|+||.|+++|++|++-+.|+++++||+|+++.....
T Consensus 326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~--- 402 (641)
T KOG0772|consen 326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV--- 402 (641)
T ss_pred CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh---
Confidence 9999999999999999999986533 2333457887 8999999999999999999999999999987643211
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee--
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-- 1333 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs-- 1333 (2435)
|. .....+.-..++|||+.+++++|+
T Consensus 403 ----------------------~t------------------------------gL~t~~~~tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 403 ----------------------RT------------------------------GLPTPFPGTDCCFSPDDKLILTGTSA 430 (641)
T ss_pred ----------------------hc------------------------------CCCccCCCCccccCCCceEEEecccc
Confidence 10 011123445689999999999975
Q ss_pred ----cCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q psy4869 1334 ----LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386 (2435)
Q Consensus 1334 ----~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~ 1386 (2435)
..|.+.+||..+.+.+..+.-....|..+.|+|.-+-|..|+.||.+++|--.
T Consensus 431 ~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 431 PNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred cCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 46789999999999999988888889999999999999999999999987443
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=235.59 Aligned_cols=286 Identities=22% Similarity=0.350 Sum_probs=241.8
Q ss_pred EEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE----E-------------E-eccCCCEEEEEEccCCC
Q psy4869 1076 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK----S-------------L-LAHEDSVTGVTFVPKTH 1137 (2435)
Q Consensus 1076 ~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~----~-------------l-~~h~~~V~~v~fsp~~~ 1137 (2435)
..+..|.-+|.+++++|+++++++++.+++|.-|++.+|+... . - +.|...+.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3455699999999999999999999999999999998876331 1 0 26788899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCE
Q psy4869 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1217 (2435)
Q Consensus 1138 ~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V 1217 (2435)
+|++|+.|..|.+|+.++.+.+..+ .+|.+.|.+++|......+++++.|+.|++|+++....+.++.+|.+.|
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVF------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcc------cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 9999999999999999998877664 4899999999999988999999999999999999999999999999999
Q ss_pred EEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccc
Q psy4869 1218 TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVS 1297 (2435)
Q Consensus 1218 ~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~ 1297 (2435)
.+|....-++.+.+|+.|+++++|++....++. |
T Consensus 290 ~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------------------------f------------------- 323 (479)
T KOG0299|consen 290 LGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------------------------F------------------- 323 (479)
T ss_pred eeechhcccceEEeccccceeEEEeccccceee---------------------------e-------------------
Confidence 999999888888888899999999984433211 0
Q ss_pred cccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEec-CCC-----------CCeEEEEEe
Q psy4869 1298 RSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY-GHK-----------LPVLSLDMS 1365 (2435)
Q Consensus 1298 ~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~-~h~-----------~~V~~la~s 1365 (2435)
...++.+.|++| -+..+|++||.+|.|.+|++.+++++++.+ +|. ..|++++..
T Consensus 324 -------------rg~~~sidcv~~-In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i 389 (479)
T KOG0299|consen 324 -------------RGGEGSIDCVAF-INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVI 389 (479)
T ss_pred -------------eCCCCCeeeEEE-ecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEec
Confidence 012467888888 566899999999999999999999988877 331 168999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC----ceEEEecccccceEEEEEeeCCC-EEEEEeCCCcEEEEECC
Q psy4869 1366 YDSTLIATGSGDRTVKVWGLDYG----DCHKSLLAHEDSVTGVTFVPKTH-YFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1366 pdg~~L~sGg~Dg~V~iwdl~~g----k~~~~~~~h~~~V~~laf~P~~~-~laSgg~Dg~V~lWd~~ 1428 (2435)
|...++++|+.+|.|++|.+.++ .++..+. -.++||+|+|++++. ++|..|...++--|-..
T Consensus 390 ~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 390 PGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred ccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 99999999999999999999988 3444444 568999999999997 66677888887777543
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=223.79 Aligned_cols=291 Identities=18% Similarity=0.255 Sum_probs=214.8
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEE---eeCCCCCeeEEEEccCCCEE-EEEeCCCeEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV---MSGHTGAVMDLKFSTDGCHI-FTCSTDQTLAV 431 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~---l~~h~~~V~~l~~s~dg~~L-~s~s~Dg~I~v 431 (2435)
.+|+||.+.|++++|+.||++||+++.|+.||+|++++-....+. ..-.-+..+.++|.||-+-+ +++-...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 579999999999999999999999999999999998753221111 11122456789999987654 45556678999
Q ss_pred EECCCCc---eEE-E--E------eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEEC
Q psy4869 432 WDLEKGQ---RIK-K--M------KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFN 498 (2435)
Q Consensus 432 wd~~tg~---~v~-~--l------~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~s 498 (2435)
|.+...+ ... . + +-|...+..+- ..++..+|++++.|..|.+||++ ++.+..+. ....-+..+.+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG-iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG-IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEe-ecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 9864321 100 0 0 11222222222 23456789999999999999999 77666663 44456678999
Q ss_pred CCCCEEEEEecCCeEEEEECC---CC-----cEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC---CCCC
Q psy4869 499 DTAECVLTGGIDNDIKMWDLR---TN-----SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPY---VPGE 567 (2435)
Q Consensus 499 p~g~~l~sgs~dg~V~lwD~~---s~-----~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~---~~~~ 567 (2435)
|+|+++++++..-.|++|.+- .| ..+..++||...|...+|+++..++++.|.||++||||+.-. ....
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 999999999999999999863 33 235677999999999999999999999999999999998632 1223
Q ss_pred ceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEec-CCCCCeeEEEEcCCCCEEEEEECCCc
Q psy4869 568 RCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP-GHNGSVNDVQFHPKEPIIMSASSDKT 646 (2435)
Q Consensus 568 ~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~-~h~~~V~~l~fspd~~~Lasgs~Dg~ 646 (2435)
+.++......+.......++..+|+|+.|+... ...+++|..++|+....+. .|...|.+++|+++|++++++|+ ..
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~ 395 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-RY 395 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-ee
Confidence 344444322223334556899999999887654 5679999999998877665 49999999999999999999984 45
Q ss_pred EEEe
Q psy4869 647 IYLG 650 (2435)
Q Consensus 647 I~vW 650 (2435)
+++.
T Consensus 396 vrv~ 399 (420)
T KOG2096|consen 396 VRVI 399 (420)
T ss_pred eeee
Confidence 5554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=253.34 Aligned_cols=247 Identities=19% Similarity=0.279 Sum_probs=188.0
Q ss_pred EEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEEccCCe--------eEEEEecCCCcEE
Q psy4869 93 AYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPL-GHRLATGSKDTDIVLWDVVAEC--------GLHRLSGHKGVIT 163 (2435)
Q Consensus 93 ~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~-g~~laSgs~Dg~I~iWd~~~~~--------~~~~l~gH~~~V~ 163 (2435)
|+..|.+++|+.....++..+.||.+.|.+++|+|+ +++||||+.|++|+|||+.... ++..+.+|.+.|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 345677899999888899999999999999999997 7999999999999999997532 3457889999999
Q ss_pred EEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccch
Q psy4869 164 DIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDK 243 (2435)
Q Consensus 164 ~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~ 243 (2435)
+++|+|. +..+|++++.|++|+|||+++++.+..+. |...|.+++|+++|.+|++++.|+.|++||++++..+
T Consensus 130 sVaf~P~-g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i----- 202 (568)
T PTZ00420 130 IIDWNPM-NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA----- 202 (568)
T ss_pred EEEECCC-CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-----
Confidence 9999975 34567899999999999999998877775 5578999999999999999999999999999864211
Q ss_pred hhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccC
Q psy4869 244 DKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRK 323 (2435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 323 (2435)
T Consensus 203 -------------------------------------------------------------------------------- 202 (568)
T PTZ00420 203 -------------------------------------------------------------------------------- 202 (568)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEeCccceeeeeecccccCccccccceeEecccCCc-----EEEEEECCCCCEEEEEeCCC----eEEEEecCCc
Q psy4869 324 NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGE-----IFCSKYHPDGQYIASSGYDR----QIFIWSVYGE 394 (2435)
Q Consensus 324 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~-----V~~l~fspdg~~Lasgs~Dg----~I~iwd~~~~ 394 (2435)
..+.+|.+. +....|++++.+|++++.|+ .|+|||++..
T Consensus 203 --------------------------------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 203 --------------------------------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred --------------------------------EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 012233332 23345678999999988775 7999999854
Q ss_pred eeeEEEe--eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEec--cCccccccCcccCC
Q psy4869 395 CENIGVM--SGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKG--HSTFVNSCDPVRRG 459 (2435)
Q Consensus 395 ~~~~~~l--~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~--h~~~v~sv~~~~~~ 459 (2435)
...+... ..+.+.+...-..++|.++++|+.|+.|++|++..+. +..+.. +..++..++|.|..
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 3343333 3333444434444568889999999999999997763 333332 33455566666653
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-22 Score=242.42 Aligned_cols=282 Identities=20% Similarity=0.377 Sum_probs=239.1
Q ss_pred CeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccc--ccccccceEEE-EEEEe-CCCeEEEeeCC
Q psy4869 149 ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFK--TMAAHLTEVWG-VCVMR-EDSYLISGSND 224 (2435)
Q Consensus 149 ~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~--~~~~h~~~V~~-l~~~p-~~~~l~s~s~D 224 (2435)
.+..+.+.||+..|..+++. ++..++++|+||++++|+-..++.+. .+.+|.+-+.. +|+.+ ++..+++|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred ceeEEEeccCccchheeEec---CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 45678899999999999984 34579999999999999987777654 45778888877 88886 45569999999
Q ss_pred CcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCc
Q psy4869 225 AELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDD 304 (2435)
Q Consensus 225 g~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (2435)
.++.+|.+...
T Consensus 81 ~~i~v~~~~~~--------------------------------------------------------------------- 91 (745)
T KOG0301|consen 81 TTIIVFKLSQA--------------------------------------------------------------------- 91 (745)
T ss_pred ceEEEEecCCC---------------------------------------------------------------------
Confidence 99999976521
Q ss_pred cccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCC
Q psy4869 305 FAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDR 384 (2435)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg 384 (2435)
.|..+|+||...|.|+....++. |++|+.|.
T Consensus 92 ------------------------------------------------~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~ 122 (745)
T KOG0301|consen 92 ------------------------------------------------EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDS 122 (745)
T ss_pred ------------------------------------------------CchhhhhccccceeeeecCCcCc-eEeccccc
Confidence 23456889999999999988888 99999999
Q ss_pred eEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEE
Q psy4869 385 QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIA 464 (2435)
Q Consensus 385 ~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~lla 464 (2435)
++++|.... ....+.+|...|+.++.-|++ .+++|+.|++|++|. .++.++++.+|.+.|..+++.+++ -|+
T Consensus 123 TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~--~fl 194 (745)
T KOG0301|consen 123 TAKVWRIGE---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDS--HFL 194 (745)
T ss_pred ceEEecchh---hhcccCCcchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCC--CeE
Confidence 999997643 234589999999999999987 899999999999999 588999999999999999998885 478
Q ss_pred EEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCC
Q psy4869 465 SGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGS 544 (2435)
Q Consensus 465 sgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~ 544 (2435)
+++.||.|++|++..........|...++++....++..++++++|++++||+.. ++.+.+.-..-.|.++++-++|.
T Consensus 195 ScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 195 SCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD 272 (745)
T ss_pred eecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC
Confidence 9999999999999555455555899999999988889999999999999999987 77777776667899999988876
Q ss_pred EEEEEECCCcEEEEEcCC
Q psy4869 545 YILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 545 ~las~s~Dg~I~lWdl~~ 562 (2435)
|++|+.||.||||..+.
T Consensus 273 -Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 273 -IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -EEEeccCceEEEEEecc
Confidence 66788999999999873
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-23 Score=243.56 Aligned_cols=313 Identities=18% Similarity=0.245 Sum_probs=254.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEec
Q psy4869 366 FCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKG 445 (2435)
Q Consensus 366 ~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~ 445 (2435)
+.+.|+.+|.+|+.|+..|.|-.+|+.+... .....-...|.++.|-.+.++|+++ ..+.++|||- .|..++.++.
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~ 208 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKR 208 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeeccccee--eeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhh
Confidence 5688999999999999999999999987532 2223345789999999877666554 5779999996 6888888887
Q ss_pred cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Q psy4869 446 HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVV 524 (2435)
Q Consensus 446 h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v 524 (2435)
|.. |..+.|.|.+ ++|++++..|.++.-|+..|+.+..+. ..+.+..|+-+|-+..+-+|...|+|.+|...+.+++
T Consensus 209 ~~~-v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 209 HIR-VARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred cCc-hhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 754 7889999987 889999999999999999999988884 5667888999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCe
Q psy4869 525 QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKC 604 (2435)
Q Consensus 525 ~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 604 (2435)
..+..|.++|.+|++.++|+++||++.|..++|||+|.+. .+.++... -....+++|.-| |++.+....
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~----ql~t~~tp-----~~a~~ls~Sqkg--lLA~~~G~~ 355 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY----QLHTYRTP-----HPASNLSLSQKG--LLALSYGDH 355 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc----ccceeecC-----CCcccccccccc--ceeeecCCe
Confidence 9999999999999999999999999999999999999643 22333221 134557777554 677777888
Q ss_pred EEEEE-CCCCc--EEEEecCC--CCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCC
Q psy4869 605 VYIWD-TTTRR--IAYKLPGH--NGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHR 679 (2435)
Q Consensus 605 V~iwd-~~s~~--~~~~l~~h--~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (2435)
|.||. .-.+. .-.-+..| .+.|..|.|.|-+++|-.|..-|. .
T Consensus 356 v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~--------------------------------t 403 (545)
T KOG1272|consen 356 VQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI--------------------------------T 403 (545)
T ss_pred eeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc--------------------------------e
Confidence 99994 32211 11111123 358999999999998888776553 2
Q ss_pred eEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCccccccc
Q psy4869 680 QILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKA 728 (2435)
Q Consensus 680 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~ 728 (2435)
.+|++|++|.++|.|+.++|+..++|+++|++.|++|.++|++ .+||.
T Consensus 404 silVPGsGePN~Ds~e~nPfetrKQRqE~EVr~LLeKippElI-sLdp~ 451 (545)
T KOG1272|consen 404 SILVPGSGEPNYDSLEDNPFETRKQRQEKEVRSLLEKIPPELI-SLDPR 451 (545)
T ss_pred eEeccCCCCCCcchhccCcchhhhHHhHHHHHHHHhhCChHhE-Eechh
Confidence 4689999999999999999999999999999999999999976 44554
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=237.75 Aligned_cols=214 Identities=21% Similarity=0.343 Sum_probs=184.3
Q ss_pred eCCCCceEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCC-CeEEEEEcCC
Q psy4869 20 ASPNCNVVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDS-SQLAVAYTNG 97 (2435)
Q Consensus 20 ~~~~~~v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~-~~lav~~~~G 97 (2435)
..|+|.|+++.+.+.+..+||++ .++.|.|||...........+...+-+.+.||..+-..++|++.. ..|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 67999999999999999999998 888999999987665443333445566788888877889999885 4789999999
Q ss_pred eEEEEECCCC-------CeEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEEcc--CCeeEEEEecCCCcEEEEEE
Q psy4869 98 SLKTFSLDTT-------DVISTFTGHKSAITVIQYDPL-GHRLATGSKDTDIVLWDVV--AECGLHRLSGHKGVITDIRF 167 (2435)
Q Consensus 98 ~i~i~d~~~~-------~~~~~l~gH~~~V~~l~f~p~-g~~laSgs~Dg~I~iWd~~--~~~~~~~l~gH~~~V~~v~~ 167 (2435)
.|++||+... .+...|.+|++.|..++|++. ..+++++++|+.+.|||.+ +.++.+...+|.++|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 9999999753 356689999999999999995 4789999999999999999 56667778999999999999
Q ss_pred eecCCCcEEEEEeCCCcEEEEeccCC-ccccccccccceEEEEEEEeCC-CeEEEeeCCCcEEEEEcCC
Q psy4869 168 MSQPGHHFVVSSAKDTFVKIWDADTG-DCFKTMAAHLTEVWGVCVMRED-SYLISGSNDAELKVWNVRD 234 (2435)
Q Consensus 168 ~~~~~~~~l~S~s~Dg~I~iWd~~tg-~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~Dg~v~vwdl~~ 234 (2435)
+|- +..+||+||.|++|+|||+++- +++.++.+|.+.|..|.|+|.. ..|++++.|+.+.|||+..
T Consensus 281 np~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 281 NPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred CCC-CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 874 5679999999999999999875 4689999999999999999974 5688999999999999974
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-19 Score=228.77 Aligned_cols=279 Identities=20% Similarity=0.350 Sum_probs=226.2
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ 438 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~ 438 (2435)
.+|...-+.+.|.|+|..|.+++.||.|++|+..........+..+...|.+++. ++.+|++++.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 4789999999999999999999999999999876542222233337778887776 45599999999999999999888
Q ss_pred eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeEEEEE
Q psy4869 439 RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWD 517 (2435)
Q Consensus 439 ~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD 517 (2435)
.-..+..-.-++.+++++.+| .+++.||+|-.|++.++........+ .|..+|.++.|+|.+++||+.+.||.|++||
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred ccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 766666666778888888877 67888999999999999877766665 7899999999999999999999999999999
Q ss_pred CCCCcEEEEEec-------C-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEE
Q psy4869 518 LRTNSVVQKLRG-------H-SDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589 (2435)
Q Consensus 518 ~~s~~~v~~l~~-------h-~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~ 589 (2435)
+.++.+...+.+ . ...+..++|+|+|..++....|+.|++|+...+ .....++.... ...+..+.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w----e~~f~Lr~~~~--ss~~~~~~w 240 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW----ELQFKLRDKLS--SSKFSDLQW 240 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc----eeheeeccccc--ccceEEEEE
Confidence 999988776643 1 345678999999999999999999999998854 33444443322 124788999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEe
Q psy4869 590 SVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLG 650 (2435)
Q Consensus 590 spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vW 650 (2435)
+|+|+|||+++.||.|.|||.++.+. ......|.+++|.|+.+.|-.-...|+..+|
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999999999987322 1234679999999999877666666665554
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=200.75 Aligned_cols=285 Identities=22% Similarity=0.320 Sum_probs=232.0
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC--------------ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC
Q psy4869 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG--------------ECENIGVMSGHTGAVMDLKFSTDGCHIFTCST 425 (2435)
Q Consensus 360 gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~--------------~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 425 (2435)
.....|.+++|+|.|.+.|+|+...++||..... .......-+.|.+.|++.+|+|+|++|++|+.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 3456799999999999999999999999985321 01122334568999999999999999999999
Q ss_pred CCeEEEEECCCC--c---eEEEEeccCccccccCcccC---CCeEEEEEe-CCCeEEEEeCCCCcceEee-cCcccEEEE
Q psy4869 426 DQTLAVWDLEKG--Q---RIKKMKGHSTFVNSCDPVRR---GQLLIASGS-DDCTVKVWDPRKKNQAVSM-NNTYQVTSV 495 (2435)
Q Consensus 426 Dg~I~vwd~~tg--~---~v~~l~~h~~~v~sv~~~~~---~~~llasgs-~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv 495 (2435)
|++|++.-.+.. + .-.++..|...|..++|..+ +..++++++ .|..|.+-|...++....+ .|.+.|-++
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal 189 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL 189 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence 999998766432 2 12456778999999988653 345666644 5788888898888887777 455566554
Q ss_pred EECCCCCEEEEEecCCeEEEEECCCCcEEEEEec--C-----CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCc
Q psy4869 496 AFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG--H-----SDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGER 568 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~--h-----~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~ 568 (2435)
++-+|-.+++|+.|.+|+.||++-..++..+.. | ...|.+++..|.|++|++|-.|....+||+| .++
T Consensus 190 -yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir----g~r 264 (350)
T KOG0641|consen 190 -YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR----GGR 264 (350)
T ss_pred -EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee----CCc
Confidence 445788999999999999999999888887732 2 3579999999999999999999999999999 678
Q ss_pred eEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC----cEEEEecCCCCCeeEEEEcCCCCEEEEEECC
Q psy4869 569 CVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR----RIAYKLPGHNGSVNDVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 569 ~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~----~~~~~l~~h~~~V~~l~fspd~~~Lasgs~D 644 (2435)
.++.+..|. ..|.++.|+|...||++|+.|..|++-|+.-. -++.+...|...+..+.|||..--+++.+.|
T Consensus 265 ~iq~f~phs----adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssad 340 (350)
T KOG0641|consen 265 MIQRFHPHS----ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD 340 (350)
T ss_pred eeeeeCCCc----cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCc
Confidence 899888775 37899999999999999999999999998632 2445566799999999999999999999999
Q ss_pred CcEEEecCC
Q psy4869 645 KTIYLGESP 653 (2435)
Q Consensus 645 g~I~vWd~~ 653 (2435)
.++.+|-++
T Consensus 341 kt~tlwa~~ 349 (350)
T KOG0641|consen 341 KTATLWALN 349 (350)
T ss_pred ceEEEeccC
Confidence 999999875
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=219.21 Aligned_cols=251 Identities=22% Similarity=0.396 Sum_probs=203.5
Q ss_pred cccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCC--EEEEEeCCCe
Q psy4869 351 LFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGC--HIFTCSTDQT 428 (2435)
Q Consensus 351 ~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~--~L~s~s~Dg~ 428 (2435)
.+.|...+..|.+.|++++. +|.|+|+|+.|.+|+|||+... ..+..+..|.+.|+++.|.++-. .|++|+.||.
T Consensus 32 ~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~-~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR-KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch-hhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 34667889999999999999 4899999999999999999764 34567778999999999998765 8999999999
Q ss_pred EEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe
Q psy4869 429 LAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG 508 (2435)
Q Consensus 429 I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs 508 (2435)
|.+|+....+.+..+++|...|+.++.+|.+ .+.++.+.|+.++.|++-.++.............+.|+|.|.+++.+.
T Consensus 109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred EEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe
Confidence 9999999999999999999999999999987 677788999999999999888777776666666688888888777766
Q ss_pred cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEE
Q psy4869 509 IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588 (2435)
Q Consensus 509 ~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~ 588 (2435)
.+ .|-+|.+.+......+... ..+.++.
T Consensus 188 ~~-~i~i~q~d~A~v~~~i~~~---------------------------------------------------~r~l~~~ 215 (362)
T KOG0294|consen 188 RN-KIDIYQLDNASVFREIENP---------------------------------------------------KRILCAT 215 (362)
T ss_pred cc-EEEEEecccHhHhhhhhcc---------------------------------------------------ccceeee
Confidence 43 4556655544333222111 1223333
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEE--cCCCCEEEEEECCCcEEEecCCCcccc
Q psy4869 589 WSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQF--HPKEPIIMSASSDKTIYLGESPLHCDK 658 (2435)
Q Consensus 589 ~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~f--spd~~~Lasgs~Dg~I~vWd~~~~~~~ 658 (2435)
|- ++.+|++|+.|+.|.+||..+..++..+.+|...|-++.+ .|++.+|+++|.||.|++||++....+
T Consensus 216 ~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 216 FL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred ec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 32 5678889999999999999999999999999999999985 567789999999999999999855443
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=229.44 Aligned_cols=288 Identities=20% Similarity=0.335 Sum_probs=236.8
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceee----------------EEEe-eCCCCCeeEEEEccCC
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECEN----------------IGVM-SGHTGAVMDLKFSTDG 417 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~----------------~~~l-~~h~~~V~~l~~s~dg 417 (2435)
..++..|.-+|.|++++|++.+.++++.+|.|.-|++..+... ...- .+|...|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4678899999999999999999999999999999997643321 0011 3788999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEE
Q psy4869 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVA 496 (2435)
Q Consensus 418 ~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~ 496 (2435)
++|++|+.|..|.|||.++.+.++.+++|.+.|.+++|.... ..+.+++.|..|++|++.....+..+ .|...|..+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 999999999999999999999999999999999999986554 56778999999999999887766665 7888999998
Q ss_pred ECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEe-C
Q psy4869 497 FNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMS-G 575 (2435)
Q Consensus 497 ~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~-~ 575 (2435)
-...++.+-+|+.|.++++|++.. +....+.+|.+.+-|++|- +...+++||.||.|.||++-. .+++.+.. .
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~K----Kkplf~~~~A 367 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLK----KKPLFTSRLA 367 (479)
T ss_pred hhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecc----cCceeEeecc
Confidence 888888888899999999999943 3344568899999999998 557899999999999999974 45555544 2
Q ss_pred cccccc-------cCeEEEEEcCCCCEEEEecCCCeEEEEECCCC----cEEEEecCCCCCeeEEEEcCCCCEEEEE-EC
Q psy4869 576 HQHNFE-------KNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR----RIAYKLPGHNGSVNDVQFHPKEPIIMSA-SS 643 (2435)
Q Consensus 576 h~~~~~-------~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~----~~~~~l~~h~~~V~~l~fspd~~~Lasg-s~ 643 (2435)
|..... ..|.+++..|..+++++|+.+|.|++|.+..+ +++..+. -.+.|++|+|+++|+.|++| +.
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccc
Confidence 321111 27899999999999999999999999998876 5666664 67899999999999955554 44
Q ss_pred CCcEEEe
Q psy4869 644 DKTIYLG 650 (2435)
Q Consensus 644 Dg~I~vW 650 (2435)
...+--|
T Consensus 447 EhRlGRW 453 (479)
T KOG0299|consen 447 EHRLGRW 453 (479)
T ss_pred cccccee
Confidence 4444333
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-22 Score=233.44 Aligned_cols=260 Identities=23% Similarity=0.441 Sum_probs=211.5
Q ss_pred ecccCCcEEEEEECCCC-CEEEEEeCCCeEEEEecCC---------ceeeEEEeeCCCCCeeEEEEccC-CCEEEEEeCC
Q psy4869 358 LEGHGGEIFCSKYHPDG-QYIASSGYDRQIFIWSVYG---------ECENIGVMSGHTGAVMDLKFSTD-GCHIFTCSTD 426 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~---------~~~~~~~l~~h~~~V~~l~~s~d-g~~L~s~s~D 426 (2435)
..-|.+.|+.+++.|+. .++|+++..+.|.|||... .+.+-..+.+|...-++|.|++. .-.|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 34699999999999965 5778889999999999753 22333478899998899999984 4479999999
Q ss_pred CeEEEEECCCC-------ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC--CcceEee-cCcccEEEEE
Q psy4869 427 QTLAVWDLEKG-------QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK--KNQAVSM-NNTYQVTSVA 496 (2435)
Q Consensus 427 g~I~vwd~~tg-------~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~--~~~~~~~-~~~~~v~sv~ 496 (2435)
+.|++||+... .+...+.+|...|..++|++.+..+|+++++|+.+.|||+|+ .++.... .|...++|++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 99999998643 245677899999999999999999999999999999999995 3333333 5788999999
Q ss_pred ECCC-CCEEEEEecCCeEEEEECCCC-cEEEEEecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCCCCceEEEE
Q psy4869 497 FNDT-AECVLTGGIDNDIKMWDLRTN-SVVQKLRGHSDTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVPGERCVKVM 573 (2435)
Q Consensus 497 ~sp~-g~~l~sgs~dg~V~lwD~~s~-~~v~~l~~h~~~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~ 573 (2435)
|+|- +..||+|+.|++|+|||+|+. +++..+.+|.+.|.+|.|+|+ ...||+++.|+++.+||+..... .++
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~-eq~---- 354 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE-EQS---- 354 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc-ccC----
Confidence 9995 556888999999999999984 578899999999999999996 56788899999999999973210 000
Q ss_pred eCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEecC
Q psy4869 574 SGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGES 652 (2435)
Q Consensus 574 ~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~I~vWd~ 652 (2435)
++. ..| ...+++....||...|+.+.|+|+.+ .|+|.++|+.+.||+.
T Consensus 355 -----------------~ed------a~d--------gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 355 -----------------PED------AED--------GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred -----------------hhh------hcc--------CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 000 001 13466777889999999999999998 7889999999999997
Q ss_pred C
Q psy4869 653 P 653 (2435)
Q Consensus 653 ~ 653 (2435)
.
T Consensus 404 s 404 (422)
T KOG0264|consen 404 A 404 (422)
T ss_pred c
Confidence 5
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.3e-22 Score=214.12 Aligned_cols=248 Identities=20% Similarity=0.334 Sum_probs=205.4
Q ss_pred CCccceEEEeecCCCCeEEEEEcCCeEEEEECCCC---CeEEEecCCCCCEEEEEEcC--CCCEEEEEeCCCCEEEEEcc
Q psy4869 73 GEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTT---DVISTFTGHKSAITVIQYDP--LGHRLATGSKDTDIVLWDVV 147 (2435)
Q Consensus 73 g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~---~~~~~l~gH~~~V~~l~f~p--~g~~laSgs~Dg~I~iWd~~ 147 (2435)
+|...|.+...+.-|++||+++.|+.|+||..++. ..+.+|.||+++|.-++|-. .|.+||++++||.|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 45556667777888999999999999999999865 46789999999999999976 89999999999999999977
Q ss_pred CCe--eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCC-c-c-ccccccccceEEEEEEEeC---C----
Q psy4869 148 AEC--GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTG-D-C-FKTMAAHLTEVWGVCVMRE---D---- 215 (2435)
Q Consensus 148 ~~~--~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg-~-~-~~~~~~h~~~V~~l~~~p~---~---- 215 (2435)
+++ ..+....|...|++|+|.|..-+.+|+.++.||.|.|.+.+.. . . -+...+|.-.|++++|.|. |
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~ 168 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD 168 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc
Confidence 765 4567789999999999999989999999999999999988765 2 2 2344789999999999985 4
Q ss_pred -------CeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEE
Q psy4869 216 -------SYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQV 288 (2435)
Q Consensus 216 -------~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 288 (2435)
..|++|+.|+.|+||+..... |
T Consensus 169 ~~~~~~~krlvSgGcDn~VkiW~~~~~~------------------------------------------------w--- 197 (299)
T KOG1332|consen 169 QGPAAKVKRLVSGGCDNLVKIWKFDSDS------------------------------------------------W--- 197 (299)
T ss_pred cCcccccceeeccCCccceeeeecCCcc------------------------------------------------h---
Confidence 459999999999999876320 0
Q ss_pred EEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEE
Q psy4869 289 FRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCS 368 (2435)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l 368 (2435)
. ....|.+|.+-|..+
T Consensus 198 ------------------------------------------~----------------------~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 198 ------------------------------------------K----------------------LERTLEGHKDWVRDV 213 (299)
T ss_pred ------------------------------------------h----------------------hhhhhhhcchhhhhh
Confidence 0 001367899999999
Q ss_pred EECCCC----CEEEEEeCCCeEEEEecCCcee--eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 369 KYHPDG----QYIASSGYDRQIFIWSVYGECE--NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 369 ~fspdg----~~Lasgs~Dg~I~iwd~~~~~~--~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
+|.|.- .+||+++.||+|.||-...+.. ....+......++.+.|+..|..|+.++.|+.+.+|.-.
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 999963 5899999999999997663322 233445567889999999999999999999999999754
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-22 Score=213.77 Aligned_cols=250 Identities=25% Similarity=0.404 Sum_probs=205.6
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce--eeEEEeeCCCCCeeEEEEcc--CCCEEEEEeCCCeEEEE
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC--ENIGVMSGHTGAVMDLKFST--DGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~--~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s~Dg~I~vw 432 (2435)
+-.+|++.|..+...--|.+||+++.|+.|+|+.++++. ..+..+.+|.++|..++|.. -|.+|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 446799999888888789999999999999999998654 57788999999999999987 79999999999999999
Q ss_pred ECCCCce--EEEEeccCccccccCcccCCC-eEEEEEeCCCeEEEEeCCCC-cc-eE--eecCcccEEEEEECCC---C-
Q psy4869 433 DLEKGQR--IKKMKGHSTFVNSCDPVRRGQ-LLIASGSDDCTVKVWDPRKK-NQ-AV--SMNNTYQVTSVAFNDT---A- 501 (2435)
Q Consensus 433 d~~tg~~--v~~l~~h~~~v~sv~~~~~~~-~llasgs~Dg~I~vwD~~~~-~~-~~--~~~~~~~v~sv~~sp~---g- 501 (2435)
.-++|+. ......|...|++++|.|... .+|++++.||.|.|++.+.. .- .. ..-|...|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 9988854 345578999999999999764 57889999999999998755 22 11 2257888999999985 5
Q ss_pred ----------CEEEEEecCCeEEEEECCCC--cEEEEEecCCCCEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCCC
Q psy4869 502 ----------ECVLTGGIDNDIKMWDLRTN--SVVQKLRGHSDTVTGLSLSPD----GSYILSNAMDNTVRIWDIRPYVP 565 (2435)
Q Consensus 502 ----------~~l~sgs~dg~V~lwD~~s~--~~v~~l~~h~~~V~~i~~spd----g~~las~s~Dg~I~lWdl~~~~~ 565 (2435)
+.|++|+.|..|+||+..++ +.-++|++|.+.|..++|.|. ...||++|.||++.||..+.. .
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-~ 244 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-Y 244 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-c
Confidence 56999999999999999875 344568999999999999996 357999999999999998731 1
Q ss_pred CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 566 GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 566 ~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
..-....+. .+...+.++.||+.|++|+.++.|+.|.+|.-.
T Consensus 245 e~wk~tll~----~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 245 EPWKKTLLE----EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred Ccccccccc----cCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 111111111 134578999999999999999999999999754
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=211.17 Aligned_cols=277 Identities=21% Similarity=0.263 Sum_probs=225.4
Q ss_pred cCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE
Q psy4869 1039 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1039 ~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~ 1118 (2435)
....|+.+.|+|.+..|+++++||.+++|++....+...+. |..++.+++|.++ ..+++|+.||.|+.+|++++.. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-D 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-e
Confidence 35789999999999999999999999999999876655555 9999999999864 5789999999999999998764 4
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy4869 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1198 (2435)
Q Consensus 1119 ~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~i 1198 (2435)
.+..|..+|.+|.+.+....+++|+||+.|++||.+.......+ .....|.++... ++.|++|+.|..|.+
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-------d~~kkVy~~~v~--g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-------DQGKKVYCMDVS--GNRLVVGTSDRKVLI 159 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-------ccCceEEEEecc--CCEEEEeecCceEEE
Confidence 55679999999999998889999999999999999874333332 234478888775 789999999999999
Q ss_pred EEccCCceeeEe--eccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCC----ceEEEEeeCCcccccCceEEEEEECC
Q psy4869 1199 WGLDYGDCHKSL--LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF----ERIVTLHFNPNVYLPLQIQVVTGGGD 1272 (2435)
Q Consensus 1199 wd~~t~~~~~~~--~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~----~~v~~~~~~~~~~~~~~~~lv~g~~d 1272 (2435)
||+++.....+. ...+-.++||++.|++.-+++++-||+|.+=.+... ++-+.+..+...
T Consensus 160 yDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~-------------- 225 (323)
T KOG1036|consen 160 YDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS-------------- 225 (323)
T ss_pred EEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc--------------
Confidence 999986643322 234558999999998888999999999988666543 222222222110
Q ss_pred CeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEe
Q psy4869 1273 KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL 1352 (2435)
Q Consensus 1273 ~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~ 1352 (2435)
......-++|++|+|+|-...||+|+.||.|.+||..+.|-+..+
T Consensus 226 -----------------------------------~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 226 -----------------------------------EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL 270 (323)
T ss_pred -----------------------------------cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc
Confidence 011123467999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeC
Q psy4869 1353 YGHKLPVLSLDMSYDSTLIATGSG 1376 (2435)
Q Consensus 1353 ~~h~~~V~~la~spdg~~L~sGg~ 1376 (2435)
......|-.++|+.||..||.|+.
T Consensus 271 ~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 271 AKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCCCCceEEEEeccCCCeEEEEec
Confidence 988889999999999999999974
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-21 Score=213.76 Aligned_cols=284 Identities=22% Similarity=0.373 Sum_probs=226.9
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q psy4869 365 IFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK 444 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~ 444 (2435)
..|+.|++.|.+||+|+.+|.|.|||+.+.. ....+.+|..+|.+++|++||+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 6899999999999999999999999987543 345678899999999999999999999999999999999999998887
Q ss_pred ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cC----cccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 445 GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NN----TYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 445 ~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~----~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
-..+|..+.|+|...+.++..-.+..-.+-++..++....- .. .....+..|++.|+++++|...|.+.+||..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 45679999999998888777776666666665543221111 11 1223344689999999999999999999999
Q ss_pred CCcEEEEEecCC-CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCc-----eEEEEeCcccccccCeEEEEEcCCC
Q psy4869 520 TNSVVQKLRGHS-DTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGER-----CVKVMSGHQHNFEKNLLRCAWSVSG 593 (2435)
Q Consensus 520 s~~~v~~l~~h~-~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~-----~v~~~~~h~~~~~~~i~~v~~spdg 593 (2435)
+.+++..++-.. ..|..|.|+..|+.|+.-+.|+.||.|+++.....++ +.+.+..--+ .-.=.+|+|+.+|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN--k~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN--KLQWKKCCFSGDG 261 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh--hhhhhheeecCCc
Confidence 999999887666 7899999999999999999999999999873221111 1111110000 0122568999999
Q ss_pred CEEEEecCC-CeEEEEECCCCcEEEEecCCC-CCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 594 LYVTAGSAD-KCVYIWDTTTRRIAYKLPGHN-GSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 594 ~~Lasgs~D-g~V~iwd~~s~~~~~~l~~h~-~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.|+++|+.- ..++||....|.+++.+.|.. ...-.+.|+|-.+.|++- ..|.+++|...
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 999998854 469999999999999998877 457789999999999888 78999999864
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=206.82 Aligned_cols=259 Identities=19% Similarity=0.313 Sum_probs=197.9
Q ss_pred cccCCcEEEEEECC-CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccC---CCEEEEEeCCCeEEEEEC
Q psy4869 359 EGHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD---GCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 359 ~gH~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~d---g~~L~s~s~Dg~I~vwd~ 434 (2435)
.+|+-.|..+.|-| |...+.+++.|.++++||.+..... ......+.|+.-+|+|- -.+|++|..|-.|++.|+
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a--~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA--VDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceee--EEeecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 37889999999998 5568889999999999998764322 22335678888889883 335677777889999999
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
.+|...+.+.||...|.++.|+|....++++|+.||.|++||++... |.++
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-----------------------------gcf~ 226 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-----------------------------GCFR 226 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc-----------------------------ceeE
Confidence 99999999999999999999999999999999999999999987541 2223
Q ss_pred EEECCCCcE---EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc--cccCeEEEEE
Q psy4869 515 MWDLRTNSV---VQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN--FEKNLLRCAW 589 (2435)
Q Consensus 515 lwD~~s~~~---v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~--~~~~i~~v~~ 589 (2435)
+.|..+++. ++.-..|.+.|++++|..||.++++++.|..+++|+....... +..+-...++ ..-.+. +.
T Consensus 227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt---l~~~g~~~~n~~~~~~~~-~~- 301 (397)
T KOG4283|consen 227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT---LREFGPIIHNQTTSFAVH-IQ- 301 (397)
T ss_pred EeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc---ccccccccccccccceEE-Ee-
Confidence 333333222 2234579999999999999999999999999999998754322 1111111110 000111 22
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 590 SVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 590 spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+.+...++---.|+.+.++.+-.++.+..+.+|-..|.|..+-|+-..+.+|..|+.|+.|...
T Consensus 302 ~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 302 SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 2333334444456899999999999999999999999999999999999999999999999763
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-21 Score=239.34 Aligned_cols=278 Identities=22% Similarity=0.345 Sum_probs=219.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCcee--eE-EEe---eCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCC
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE--NI-GVM---SGHTGAVMDLKFST-DGCHIFTCSTDQTLAVWDLEK 436 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~--~~-~~l---~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~t 436 (2435)
.+.++..+++-..|+.++.. .+.|+.+..... .. ..+ +.-...+.+++|.. +.++|++++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 34556667888888877654 566776543211 11 111 11224577889986 567899999999999999986
Q ss_pred ---CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECC-CCCEEEEEecCC
Q psy4869 437 ---GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFND-TAECVLTGGIDN 511 (2435)
Q Consensus 437 ---g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp-~g~~l~sgs~dg 511 (2435)
.+.+..+..|...+++++|++..+++|++|+.||+|++||++..+....+ .....|..|+|+| .+.+|+++.+.|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 56667889999999999999999999999999999999999987766655 4566799999998 577899999999
Q ss_pred eEEEEECCCC-cEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEc
Q psy4869 512 DIKMWDLRTN-SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWS 590 (2435)
Q Consensus 512 ~V~lwD~~s~-~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~s 590 (2435)
.+++||+|.. ++...+.+|.++|.|+.|+|++.+||+||.|++|+|||+....+ +.+.++. ...++.++.|-
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~--~~~~tIn-----Tiapv~rVkWR 272 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA--KPKHTIN-----TIAPVGRVKWR 272 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc--cceeEEe-----ecceeeeeeec
Confidence 9999999975 56678889999999999999999999999999999999985322 2222332 12378899999
Q ss_pred CCCCE-EEEec--CCCeEEEEECCCC-cEEEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEE
Q psy4869 591 VSGLY-VTAGS--ADKCVYIWDTTTR-RIAYKLPGHNGSVNDVQFHP-KEPIIMSASSDKTIYL 649 (2435)
Q Consensus 591 pdg~~-Lasgs--~Dg~V~iwd~~s~-~~~~~l~~h~~~V~~l~fsp-d~~~Lasgs~Dg~I~v 649 (2435)
|...+ |++++ .|-.|+|||++.. -+...+..|...++.++|.. |...|.+++.||+|..
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred cCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 98765 55555 3789999999865 56778889999999999965 5558999999998864
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=238.73 Aligned_cols=282 Identities=21% Similarity=0.337 Sum_probs=221.9
Q ss_pred EEEeecCCCCeEEEEEcCCeEEEEECCCCC----eEEEecCC---CCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccC--
Q psy4869 79 CQLSPNHDSSQLAVAYTNGSLKTFSLDTTD----VISTFTGH---KSAITVIQYDP-LGHRLATGSKDTDIVLWDVVA-- 148 (2435)
Q Consensus 79 ~~~~~~~d~~~lav~~~~G~i~i~d~~~~~----~~~~l~gH---~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~-- 148 (2435)
++++-+++-..++++ +.-.+++|.+.... ....+.+- --.+..|+|+. +.++|||++..|.|.+||+..
T Consensus 43 nAIs~nr~~~qiv~A-Grs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 43 NAISVNRDINQIVVA-GRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred ceEeecCCcceeEEe-cccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 367777887788887 44556777776442 22222221 12345577774 458999999999999999987
Q ss_pred -CeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeC-CCeEEEeeCCCc
Q psy4869 149 -ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRE-DSYLISGSNDAE 226 (2435)
Q Consensus 149 -~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~Dg~ 226 (2435)
.+.+..|..|...|.++.|++. ...+|+|||.||+||+||++......++.+....|..|.|+|. +.+|+++.+.|.
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHST-EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred cchhhhHhhhhccceeeeeeccC-CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce
Confidence 4556788999999999999864 4579999999999999999999999999999999999999994 778999999999
Q ss_pred EEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccc
Q psy4869 227 LKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFA 306 (2435)
Q Consensus 227 v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (2435)
+.+||+|..+.
T Consensus 201 lqlWDlRqp~r--------------------------------------------------------------------- 211 (839)
T KOG0269|consen 201 LQLWDLRQPDR--------------------------------------------------------------------- 211 (839)
T ss_pred EEEeeccCchh---------------------------------------------------------------------
Confidence 99999984310
Q ss_pred cccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeE
Q psy4869 307 FGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQI 386 (2435)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I 386 (2435)
+...+.+|+++|.|+.|+|++.+||+||.|++|
T Consensus 212 -----------------------------------------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 212 -----------------------------------------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred -----------------------------------------------HHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 112356899999999999999999999999999
Q ss_pred EEEecCCceeeEEEeeCCCCCeeEEEEccCCC-EEEEEeC--CCeEEEEECCCC-ceEEEEeccCccccccCcccCCCeE
Q psy4869 387 FIWSVYGECENIGVMSGHTGAVMDLKFSTDGC-HIFTCST--DQTLAVWDLEKG-QRIKKMKGHSTFVNSCDPVRRGQLL 462 (2435)
Q Consensus 387 ~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s~--Dg~I~vwd~~tg-~~v~~l~~h~~~v~sv~~~~~~~~l 462 (2435)
+|||+.+........-.-..+|..++|-|+.+ +|++++. |-.|+|||++.. -+...+..|...+..++|.......
T Consensus 245 kiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~ 324 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRIN 324 (839)
T ss_pred EEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCcee
Confidence 99999854433333333458999999999755 5666664 778999999754 4567888999999999998877788
Q ss_pred EEEEeCCCeEEEEeCC
Q psy4869 463 IASGSDDCTVKVWDPR 478 (2435)
Q Consensus 463 lasgs~Dg~I~vwD~~ 478 (2435)
+.+++.|+++..-..+
T Consensus 325 l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 325 LWSCSKDGTVLQHLFK 340 (839)
T ss_pred eEeecCccHHHHhhhh
Confidence 8899999887554433
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=227.92 Aligned_cols=379 Identities=19% Similarity=0.303 Sum_probs=252.1
Q ss_pred CCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEE-
Q psy4869 35 EGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVIST- 112 (2435)
Q Consensus 35 ~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~- 112 (2435)
...+||.+ .+|.|.|+|........ ++........|..+|-++.|.|-..+|+.+.+|..++.||++....++.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~----ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~ 138 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRL----EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR 138 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcch----hhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce
Confidence 45588888 89999999988665441 3344455567999999999999778999999999999999999999887
Q ss_pred -ecCCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEEccCCe---------------------------eEEEEecCCCcEE
Q psy4869 113 -FTGHKSAITVIQYDPLG-HRLATGSKDTDIVLWDVVAEC---------------------------GLHRLSGHKGVIT 163 (2435)
Q Consensus 113 -l~gH~~~V~~l~f~p~g-~~laSgs~Dg~I~iWd~~~~~---------------------------~~~~l~gH~~~V~ 163 (2435)
+.||++.|.+++|.|+. ..+++|+.||.|.|||++-.. .++..+.|.+.|.
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 99999999999999976 778999999999999974322 0122345555555
Q ss_pred E---EEEeecCCCcEEEEEeC-CCcEEEEeccCCcccc--------ccccc---cceEEEEEEEeCCCeEEEeeCCCcEE
Q psy4869 164 D---IRFMSQPGHHFVVSSAK-DTFVKIWDADTGDCFK--------TMAAH---LTEVWGVCVMREDSYLISGSNDAELK 228 (2435)
Q Consensus 164 ~---v~~~~~~~~~~l~S~s~-Dg~I~iWd~~tg~~~~--------~~~~h---~~~V~~l~~~p~~~~l~s~s~Dg~v~ 228 (2435)
+ +.++. +...||++|. |+.|||||++...+.. .+.-| ...+.+++....|.+|++...|+.|+
T Consensus 219 ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy 296 (720)
T KOG0321|consen 219 SSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIY 296 (720)
T ss_pred eeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEE
Confidence 5 44443 4456888887 9999999998876532 12223 33456666666789988888899999
Q ss_pred EEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccc
Q psy4869 229 VWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFG 308 (2435)
Q Consensus 229 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (2435)
+|++.+...- +..
T Consensus 297 ~ynm~s~s~s---------------------P~~---------------------------------------------- 309 (720)
T KOG0321|consen 297 FYNMRSLSIS---------------------PVA---------------------------------------------- 309 (720)
T ss_pred EEeccccCcC---------------------chh----------------------------------------------
Confidence 9999853210 000
Q ss_pred cchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcE--EEEEECCCCCEEEEEeCCCeE
Q psy4869 309 IDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEI--FCSKYHPDGQYIASSGYDRQI 386 (2435)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V--~~l~fspdg~~Lasgs~Dg~I 386 (2435)
.+.||...- ..-..+|++.+|++|+.|...
T Consensus 310 ------------------------------------------------~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~a 341 (720)
T KOG0321|consen 310 ------------------------------------------------EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQA 341 (720)
T ss_pred ------------------------------------------------hccCcccceeeeeeecCCCCceEeccCCCcce
Confidence 000000000 001357899999999999999
Q ss_pred EEEecCCceeeEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCCceE--------------EEEeccCcccc
Q psy4869 387 FIWSVYGECENIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQTLAVWDLEKGQRI--------------KKMKGHSTFVN 451 (2435)
Q Consensus 387 ~iwd~~~~~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg~~v--------------~~l~~h~~~v~ 451 (2435)
.+|.+.........+.+|...|+.++|.| +-.-+++|++|..+++|++..+-.. ..+++|...+.
T Consensus 342 yiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~ 421 (720)
T KOG0321|consen 342 YIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVL 421 (720)
T ss_pred eeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccc
Confidence 99999887777888999999999999998 3446888899999999998654221 12233332222
Q ss_pred ccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe----cCCeEEEEECCCCcEEEEE
Q psy4869 452 SCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG----IDNDIKMWDLRTNSVVQKL 527 (2435)
Q Consensus 452 sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs----~dg~V~lwD~~s~~~v~~l 527 (2435)
.+.+.-.+.. .....+..++| .....++-.|++.-...+. ..-.|..++....++....
T Consensus 422 nv~ss~~~t~---~~pR~~~~r~~--------------ssP~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~ 484 (720)
T KOG0321|consen 422 NVNSSLRKTY---KDPREGMNRIS--------------SSPVSLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSR 484 (720)
T ss_pred cccccccccc---cchhhhccccc--------------cCccchhcCcCCcccccCCCcccccccceecchhccCccccc
Confidence 2222111100 00001111111 1223344445554444331 2233555665555554433
Q ss_pred --ecCCCCEEEEEEcCCCCEEEEEEC
Q psy4869 528 --RGHSDTVTGLSLSPDGSYILSNAM 551 (2435)
Q Consensus 528 --~~h~~~V~~i~~spdg~~las~s~ 551 (2435)
.+|-..|....|++.+..+++.+-
T Consensus 485 ~s~~~~~Svs~~d~ss~~s~~~s~SP 510 (720)
T KOG0321|consen 485 GSGGHLSSVSAEDWSSEKSQLASRSP 510 (720)
T ss_pred cccccccccccCCCccccccccccCc
Confidence 347778888888877767777665
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-20 Score=216.56 Aligned_cols=285 Identities=16% Similarity=0.228 Sum_probs=236.9
Q ss_pred CcCEEEEEEcCCCCEEEEEECCCcEEEEEccC--CceeEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCcce
Q psy4869 1082 KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY--GDCHKSLLAHEDSVTGVTFVPKTH-YFFTTSKDGRVKQWDADNFER 1158 (2435)
Q Consensus 1082 ~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t--~~~~~~l~~h~~~V~~v~fsp~~~-~l~s~s~Dg~V~iwD~~~~~~ 1158 (2435)
.++|+++.|+|...+|++|+.|++++||.++. ...++.+.--..+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999999853 345666666778999999999998 888999999999999987654
Q ss_pred eEEEEEEEeeccc-ccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCc
Q psy4869 1159 IVTLHFFISLYGH-KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1237 (2435)
Q Consensus 1159 ~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~ 1237 (2435)
... . ...++ ...+..+.+++++++|+..+..|.|.+....+++.+..++ -.+.|..+.|+.+++.|++++.+|.
T Consensus 293 ~k~-~---~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 293 TKL-K---PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred ccc-c---CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCce
Confidence 332 2 22333 3457778899999999999999999999999999888874 5778999999999999999999999
Q ss_pred EEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccE
Q psy4869 1238 VKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV 1317 (2435)
Q Consensus 1238 I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 1317 (2435)
|.+||+++...+..+.-... -.-
T Consensus 368 V~v~nl~~~~~~~rf~D~G~---------------------------------------------------------v~g 390 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGS---------------------------------------------------------VHG 390 (514)
T ss_pred EEEEecCCcceEEEEeecCc---------------------------------------------------------cce
Confidence 99999998765544321111 123
Q ss_pred EEEEecCCcceeEEeecCCeEEEEEccc------ceEEEEecCCCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCCCCc
Q psy4869 1318 LCARVSPDSKLLAVSLLDTTVKIFFLDT------FKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGLDYGD 1389 (2435)
Q Consensus 1318 ~~ia~spdg~~lavgs~dG~V~v~d~~~------~k~i~~~~~h~~~V~~la~spdg~~L~sGg--~Dg~V~iwdl~~gk 1389 (2435)
..++.+++|+|||+||..|.|-|||.++ .+++..+..-...|..|.|++|+++||.++ .+..+++.++....
T Consensus 391 ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 391 TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 5678889999999999999999999764 567778887888999999999999988877 46889999998877
Q ss_pred eEEEecccc---cceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1390 CHKSLLAHE---DSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1390 ~~~~~~~h~---~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
....++..+ +.|++|+|+|.+.+||.|-.+|+|.||.+.
T Consensus 471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 766666433 469999999999999999999999999975
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=220.07 Aligned_cols=285 Identities=21% Similarity=0.303 Sum_probs=229.2
Q ss_pred ccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEE
Q psy4869 965 AHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1044 (2435)
Q Consensus 965 ~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 1044 (2435)
+|..-|.++..+... .++.+|+. |.|+|||+.... .+. .+. .-.-++...-|.
T Consensus 417 ~HGEvVcAvtIS~~t----------rhVyTgGk-gcVKVWdis~pg------~k~-Pvs---------qLdcl~rdnyiR 469 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPT----------RHVYTGGK-GCVKVWDISQPG------NKS-PVS---------QLDCLNRDNYIR 469 (705)
T ss_pred ccCcEEEEEEecCCc----------ceeEecCC-CeEEEeeccCCC------CCC-ccc---------cccccCccccee
Confidence 567677788887664 57888776 999999985321 000 000 111233467799
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCC--eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec
Q psy4869 1045 CARVSPDSKLLAVSLLDTTVKIFFLDTF--KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1122 (2435)
Q Consensus 1045 ~l~~spdg~~Lavg~~dg~V~i~d~~~~--~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~ 1122 (2435)
.+.+.|||+.|++|++-..+.|||+..- .....+..-.-..++++.+||.++++++..||.|.|||+.+...++.|++
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG 549 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG 549 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC
Confidence 9999999999999999999999998743 33334444445688999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q psy4869 1123 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202 (2435)
Q Consensus 1123 h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~ 1202 (2435)
|.+.+.+|..+++|..|.+|+-|++||.||++.+.++... .....|.++...|++.++++|-..+.|.+....
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-------dF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-------DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-------hhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 9999999999999999999999999999999988766543 356889999999999999999999999998876
Q ss_pred CCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccc
Q psy4869 1203 YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLEL 1282 (2435)
Q Consensus 1203 t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~ 1282 (2435)
. .....+..|..-|-+++|.+.|+++++.+.|+.+..|...-+..++..
T Consensus 623 k-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs------------------------------ 671 (705)
T KOG0639|consen 623 K-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------------------------------ 671 (705)
T ss_pred C-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec------------------------------
Confidence 4 345667789999999999999999999999999999976544332211
Q ss_pred ccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEc
Q psy4869 1283 VSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFL 1343 (2435)
Q Consensus 1283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~ 1343 (2435)
+....|.++.+|-|.+++++||.|....||.+
T Consensus 672 -----------------------------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 -----------------------------KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -----------------------------cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 22456788888889999999998887777753
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-20 Score=215.57 Aligned_cols=287 Identities=18% Similarity=0.310 Sum_probs=236.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEecCCcee-eEEEeeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCce
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE-NIGVMSGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEKGQR 439 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~tg~~ 439 (2435)
.+.|+++.|||.-..|++|+.||.++||.+.+... .+..+.-...+|....|.|+|. .+++++....++.||+++++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 47899999999999999999999999999976433 3444455578999999999998 899999999999999998864
Q ss_pred EE--EEeccC-ccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEE
Q psy4869 440 IK--KMKGHS-TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMW 516 (2435)
Q Consensus 440 v~--~l~~h~-~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lw 516 (2435)
.. .+.++. ..+.....+++++ +|+..+..|.|.+....+++.+..+...+.|..++|+.+++.|++.+.+|.|++|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 33 333443 2344555677775 6778889999999999999999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEEecCCC-CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC--CCCceEEEEeCcccccccCeEEEEEcCCC
Q psy4869 517 DLRTNSVVQKLRGHSD-TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV--PGERCVKVMSGHQHNFEKNLLRCAWSVSG 593 (2435)
Q Consensus 517 D~~s~~~v~~l~~h~~-~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~--~~~~~v~~~~~h~~~~~~~i~~v~~spdg 593 (2435)
|++...+++.+....+ .-+.++.+++|.+||+||..|.|.|||..... ...+++..+. +....|.++.|++|+
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d----NLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD----NLTTAITSLQFNHDA 447 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh----hhheeeeeeeeCcch
Confidence 9999999998864322 23678888999999999999999999976422 1234444443 233478999999999
Q ss_pred CEEEEecC--CCeEEEEECCCCcEEEEecCC---CCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 594 LYVTAGSA--DKCVYIWDTTTRRIAYKLPGH---NGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 594 ~~Lasgs~--Dg~V~iwd~~s~~~~~~l~~h---~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
++||.+|. +..+++-++.+......++.. -+.|+|++|+|.+.+||.|..+|.+.+|.+.
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999875 678999999888777766653 3568999999999999999999999999874
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=225.28 Aligned_cols=283 Identities=21% Similarity=0.366 Sum_probs=221.3
Q ss_pred EEEECCC---CCEEEEEeCCCeEEEEecCCce-----eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q psy4869 367 CSKYHPD---GQYIASSGYDRQIFIWSVYGEC-----ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ 438 (2435)
Q Consensus 367 ~l~fspd---g~~Lasgs~Dg~I~iwd~~~~~-----~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~ 438 (2435)
++.|++. .+.||.+..||.|.++|..... ..+.....|.+.|.+++|.|....|++++.|.++++||+++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 3566653 4689999999999999976422 2245567899999999999966789999999999999999998
Q ss_pred eEEE--EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc--------------------ceEee--------cC
Q psy4869 439 RIKK--MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN--------------------QAVSM--------NN 488 (2435)
Q Consensus 439 ~v~~--l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~--------------------~~~~~--------~~ 488 (2435)
.+.. +.||...+.+++|.+.++..|++|+.||.|.|||++-.. +.... .+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8877 899999999999999999999999999999999986322 00000 11
Q ss_pred cccEEE---EEECCCCCEEEEEec-CCeEEEEECCCCcEEEEE--------ecC---CCCEEEEEEcCCCCEEEEEECCC
Q psy4869 489 TYQVTS---VAFNDTAECVLTGGI-DNDIKMWDLRTNSVVQKL--------RGH---SDTVTGLSLSPDGSYILSNAMDN 553 (2435)
Q Consensus 489 ~~~v~s---v~~sp~g~~l~sgs~-dg~V~lwD~~s~~~v~~l--------~~h---~~~V~~i~~spdg~~las~s~Dg 553 (2435)
...|.+ +.+..|...||+++. |+.|++||++........ ..| .-.+.++.....|.+|.+.+.|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 223444 555678888998877 999999999976543322 223 23577788888899999888899
Q ss_pred cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC-cEEEEecCCCCCeeEEEEc
Q psy4869 554 TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR-RIAYKLPGHNGSVNDVQFH 632 (2435)
Q Consensus 554 ~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~-~~~~~l~~h~~~V~~l~fs 632 (2435)
.|++|+++.. ...++..+.++... ..-..-..+||+.+|++|+.|...++|.+.+. .....+.||.-.|++++|.
T Consensus 294 sIy~ynm~s~--s~sP~~~~sg~~~~--sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 294 SIYFYNMRSL--SISPVAEFSGKLNS--SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred cEEEEecccc--CcCchhhccCcccc--eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 9999999864 34556666665432 12344567899999999999999999999876 4566778999999999998
Q ss_pred CCCC-EEEEEECCCcEEEecCC
Q psy4869 633 PKEP-IIMSASSDKTIYLGESP 653 (2435)
Q Consensus 633 pd~~-~Lasgs~Dg~I~vWd~~ 653 (2435)
|... -++++++|-++++|++.
T Consensus 370 pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 370 PSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred cccCCCceeeccCcceEEEecc
Confidence 8543 56777999999999995
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=217.47 Aligned_cols=293 Identities=16% Similarity=0.140 Sum_probs=221.7
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEEccCCceeEEEeccCCCEEEEE
Q psy4869 1053 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLI-ATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131 (2435)
Q Consensus 1053 ~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L-~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~ 1131 (2435)
..+++++.|+.|++||..+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++.+..+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 5677888899999999999998888886644 6789999999876 5667889999999999988777765443 56789
Q ss_pred EccCCCEEEEE-eCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCC-cEEEEEccCCceeeE
Q psy4869 1132 FVPKTHYFFTT-SKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDR-TVKVWGLDYGDCHKS 1209 (2435)
Q Consensus 1132 fsp~~~~l~s~-s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg-~V~iwd~~t~~~~~~ 1209 (2435)
|+|+++.++++ ..++.|++||+.+...+..+. +...+.+++|+|++.+++++..++ .+.+||.++++....
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 99999877655 568999999998865544432 234467899999999999988765 467889988876655
Q ss_pred eeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccc
Q psy4869 1210 LLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE 1288 (2435)
Q Consensus 1210 ~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~ 1288 (2435)
+.. .....++.|+|+++.|++++ .++.|.+||+++.+.+..+...... .
T Consensus 153 ~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~---------------------~-------- 202 (300)
T TIGR03866 153 VLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG---------------------V-------- 202 (300)
T ss_pred EEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc---------------------c--------
Confidence 432 33567899999999886554 6999999999876554433211000 0
Q ss_pred ccccccccccccceeeeeecccccccccEEEEEecCCcceeEEe-ecCCeEEEEEcccceEEEEecCCCCCeEEEEEecC
Q psy4869 1289 ADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVS-LLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYD 1367 (2435)
Q Consensus 1289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavg-s~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spd 1367 (2435)
.........++|+|+|++++++ ..++++.+||.++++.+..+. +...+.+++|+|+
T Consensus 203 ----------------------~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (300)
T TIGR03866 203 ----------------------HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD 259 (300)
T ss_pred ----------------------ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCC
Confidence 0001123357899999986554 456789999999888776554 3457889999999
Q ss_pred CCEEEEE-eCCCcEEEEeCCCCceEEEecccccceEEEEEee
Q psy4869 1368 STLIATG-SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP 1408 (2435)
Q Consensus 1368 g~~L~sG-g~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P 1408 (2435)
|++|+++ +.++.|++||+++++++..++.. ...++|+|+|
T Consensus 260 g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 260 EKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9999886 56899999999999999988765 4559999875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-18 Score=212.69 Aligned_cols=471 Identities=17% Similarity=0.226 Sum_probs=314.2
Q ss_pred EEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe-CCCeEEEEEEecCC---CEEEEEeCCCeEEEEEccCCceeeccc
Q psy4869 889 RALAFSSDNLALVSACASQVKIWNRPSLSCLRTID-TGSYALSVCFVPGD---RHVLVGTKDGRLLIVDIGAGEILEDIP 964 (2435)
Q Consensus 889 ~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~-~~~~v~~vafspdg---~~Lavg~~dg~V~vwd~~sg~~v~~~~ 964 (2435)
..-.||+|+++++..+++.|.||...++.++..++ +...+..+.+.|.. .++.+...+|.|.+||+..+.++..+.
T Consensus 20 ~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred cccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 34678999999999999999999999999997776 44555666776643 356678899999999999999998886
Q ss_pred ccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEE
Q psy4869 965 AHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1044 (2435)
Q Consensus 965 ~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 1044 (2435)
.+. ++.++-+.+..... ..++..+.+..-.+.... ......... ..+ .+........ ........
T Consensus 100 ~~~-~v~~~~~~~~~a~~-------s~~~~~s~~~~~~~~~~s-~~~~~q~~~--~~~---~t~~~~~~d~-~~~~~~~~ 164 (792)
T KOG1963|consen 100 NNL-PVHALVYKPAQADI-------SANVYVSVEDYSILTTFS-KKLSKQSSR--FVL---ATFDSAKGDF-LKEHQEPK 164 (792)
T ss_pred cCC-ceeEEEechhHhCc-------cceeEeecccceeeeecc-cccccceee--eEe---eeccccchhh-hhhhcCCc
Confidence 554 33344332221000 012211111110011000 000000000 000 0000000000 01111256
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEE----ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC--C--ce
Q psy4869 1045 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL----YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY--G--DC 1116 (2435)
Q Consensus 1045 ~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l----~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t--~--~~ 1116 (2435)
++.+++.|.+.++.. +..+.+|.+......... ..|.-.+++.+++|+++++++|..||.|.+|.--. + .-
T Consensus 165 ~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred cEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 788999998888877 566888988764421111 24777799999999999999999999999996422 2 22
Q ss_pred eEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcE
Q psy4869 1117 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196 (2435)
Q Consensus 1117 ~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 1196 (2435)
...+.-|.+.|.++.|+++|.+|++|++.+.+.+|.+.++++.. + ..-.++|..+.++||+...+....|+.|
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf-L------PRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF-L------PRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc-c------cccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 34556689999999999999999999999999999999887322 2 2456899999999999999999999999
Q ss_pred EEEEccCCceeeEeec-----------cCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceE
Q psy4869 1197 KVWGLDYGDCHKSLLA-----------HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQ 1265 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~~~-----------h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~ 1265 (2435)
.+....+......+.+ ..+-.+.+++.|-.+.++-.+..|.|.+||+-+.+.+..++.....+.+..
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~-- 394 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD-- 394 (792)
T ss_pred EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCc--
Confidence 9998766554333322 244567788888777788888899999999888777665543222111110
Q ss_pred EEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee--------cC--
Q psy4869 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL--------LD-- 1335 (2435)
Q Consensus 1266 lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs--------~d-- 1335 (2435)
+ ...-.++.++.+-.|.++++.- .|
T Consensus 395 -------~--------------------------------------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 395 -------V--------------------------------------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred -------c--------------------------------------eeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence 0 1122355556666677777642 33
Q ss_pred CeEEEEEcccc----eEEEEec-CCCCCeEEEEEec--CCCEEEEEeCCCcEEEEeCCC----------CceEEEecccc
Q psy4869 1336 TTVKIFFLDTF----KFFISLY-GHKLPVLSLDMSY--DSTLIATGSGDRTVKVWGLDY----------GDCHKSLLAHE 1398 (2435)
Q Consensus 1336 G~V~v~d~~~~----k~i~~~~-~h~~~V~~la~sp--dg~~L~sGg~Dg~V~iwdl~~----------gk~~~~~~~h~ 1398 (2435)
-.+++|-+... .+...+. .|...+...++.+ .....++++.||.++||-+.. ..|++...-|.
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k 509 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK 509 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc
Confidence 35777877543 3333333 6776666666644 233899999999999998833 23555444688
Q ss_pred cceEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1399 DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1399 ~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
.++++++|+.|| .++++|.|+.|.+||+.++
T Consensus 510 ~~i~a~~fs~dG-slla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 510 TPITALCFSQDG-SLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred CcccchhhcCCC-cEEEEecCCEEEEecCCCh
Confidence 999999999999 5666888999999999984
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=203.66 Aligned_cols=259 Identities=20% Similarity=0.344 Sum_probs=199.6
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCe----eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEe
Q psy4869 114 TGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAEC----GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189 (2435)
Q Consensus 114 ~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~----~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd 189 (2435)
.+|++-|+++.|++.|+++||||.|++|+|||..... +...++.|.+.|..|.|.+..-++.+++++.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999999999999999999999999975433 556789999999999998878889999999999999997
Q ss_pred cc---------CCccccccccccceEEEEEEEeC--CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccC
Q psy4869 190 AD---------TGDCFKTMAAHLTEVWGVCVMRE--DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSED 258 (2435)
Q Consensus 190 ~~---------tg~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (2435)
-. .-....++..-++.|..++|.|. |-.|++++.||++|||+.-....+.+.. +.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~------------Lq-- 155 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT------------LQ-- 155 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch------------hh--
Confidence 52 11134567778899999999995 6689999999999999876432211100 00
Q ss_pred CCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceee
Q psy4869 259 EPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKV 338 (2435)
Q Consensus 259 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~ 338 (2435)
.++
T Consensus 156 ------------------------------------------------------~Ei----------------------- 158 (361)
T KOG2445|consen 156 ------------------------------------------------------HEI----------------------- 158 (361)
T ss_pred ------------------------------------------------------hhh-----------------------
Confidence 000
Q ss_pred eeecccccCccccccceeEecccCCcEEEEEECCC---CCEEEEEeCC-----CeEEEEecCC---ceeeEEEeeCCCCC
Q psy4869 339 QKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPD---GQYIASSGYD-----RQIFIWSVYG---ECENIGVMSGHTGA 407 (2435)
Q Consensus 339 ~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspd---g~~Lasgs~D-----g~I~iwd~~~---~~~~~~~l~~h~~~ 407 (2435)
+.+.. ....|..+..|+.|+|. ..+||.|+.+ +.++||.... ....+..+.+|..+
T Consensus 159 ~~~~~-------------pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 159 QNVID-------------PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP 225 (361)
T ss_pred hhccC-------------CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence 00000 11235566789999875 4688888766 5888997653 23456678899999
Q ss_pred eeEEEEccC----CCEEEEEeCCCeEEEEECCCC--------------------ceEEEEeccCccccccCcccCCCeEE
Q psy4869 408 VMDLKFSTD----GCHIFTCSTDQTLAVWDLEKG--------------------QRIKKMKGHSTFVNSCDPVRRGQLLI 463 (2435)
Q Consensus 408 V~~l~~s~d----g~~L~s~s~Dg~I~vwd~~tg--------------------~~v~~l~~h~~~v~sv~~~~~~~~ll 463 (2435)
|++|+|.|+ ...|++++.|| |+||++... +.+..+.+|...|..+.|.-.| .+|
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiL 303 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TIL 303 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEE
Confidence 999999995 34688999999 999998631 2345667899999999998877 788
Q ss_pred EEEeCCCeEEEEeCC
Q psy4869 464 ASGSDDCTVKVWDPR 478 (2435)
Q Consensus 464 asgs~Dg~I~vwD~~ 478 (2435)
++.++||.||+|...
T Consensus 304 sStGdDG~VRLWkan 318 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCCCceeeehhhh
Confidence 999999999999754
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=215.98 Aligned_cols=288 Identities=18% Similarity=0.249 Sum_probs=225.9
Q ss_pred CCCEEEEEccCCeeEEEEecCCC--cEEEEEEeecCCCcEEEEEeCCCcEEEEecc--CCccccccccccceEEEEEEEe
Q psy4869 138 DTDIVLWDVVAECGLHRLSGHKG--VITDIRFMSQPGHHFVVSSAKDTFVKIWDAD--TGDCFKTMAAHLTEVWGVCVMR 213 (2435)
Q Consensus 138 Dg~I~iWd~~~~~~~~~l~gH~~--~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~--tg~~~~~~~~h~~~V~~l~~~p 213 (2435)
...++|||+........+-.|+. .|.++.|... +...+++.+.|..|++|.-. +++....-+...+.-.||+...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~-n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRR-NFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeecccc-ceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence 35699999988776555544443 5999999643 22456667889999999643 3332222122222345565556
Q ss_pred CCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEee
Q psy4869 214 EDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLAL 293 (2435)
Q Consensus 214 ~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 293 (2435)
...|+++|+..+.|+|||++.+.+
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~-------------------------------------------------------- 113 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLI-------------------------------------------------------- 113 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHH--------------------------------------------------------
Confidence 678999999999999999873210
Q ss_pred eecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCC
Q psy4869 294 CISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPD 373 (2435)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspd 373 (2435)
...+++|...|+++.|+..
T Consensus 114 -------------------------------------------------------------hr~lkdh~stvt~v~YN~~ 132 (673)
T KOG4378|consen 114 -------------------------------------------------------------HRFLKDHQSTVTYVDYNNT 132 (673)
T ss_pred -------------------------------------------------------------hhhccCCcceeEEEEecCC
Confidence 0135689999999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCE-EEEEeCCCeEEEEECCCCceEEEE-eccCcccc
Q psy4869 374 GQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCH-IFTCSTDQTLAVWDLEKGQRIKKM-KGHSTFVN 451 (2435)
Q Consensus 374 g~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~-L~s~s~Dg~I~vwd~~tg~~v~~l-~~h~~~v~ 451 (2435)
..|||+++..|.|.|..+..+......-.+....|+-+.|++-.+. |.+++++|.|.+||+....++..+ +.|..+..
T Consensus 133 DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~ 212 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCR 212 (673)
T ss_pred cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcC
Confidence 9999999999999999987654332222223456778999996654 567899999999999776665544 67999999
Q ss_pred ccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCC-CcEEEEEecC
Q psy4869 452 SCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRT-NSVVQKLRGH 530 (2435)
Q Consensus 452 sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s-~~~v~~l~~h 530 (2435)
.++|+|.++.+|++.+.|..|.+||++.......+.-..+...++|.++|.+|+.|...|.|+.||+|. ..++..+..|
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred cceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence 999999999999999999999999999888888888888999999999999999999999999999996 5678999999
Q ss_pred CCCEEEEEEcCCC
Q psy4869 531 SDTVTGLSLSPDG 543 (2435)
Q Consensus 531 ~~~V~~i~~spdg 543 (2435)
...|++|+|.|..
T Consensus 293 ~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 293 DASVTRVAFQPSP 305 (673)
T ss_pred ccceeEEEeeecc
Confidence 9999999998865
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=226.27 Aligned_cols=285 Identities=22% Similarity=0.287 Sum_probs=231.0
Q ss_pred ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCC-ceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q psy4869 1079 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG-DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1157 (2435)
Q Consensus 1079 ~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~-~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~ 1157 (2435)
..|....+.|+|.|+|.+|++++.||.|++|+.... ..-..+..+...|.+++.. +..|++|+.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 468888999999999999999999999999998655 3334444477778777765 5589999999999999998877
Q ss_pred eeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCc
Q psy4869 1158 RIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1237 (2435)
Q Consensus 1158 ~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~ 1237 (2435)
.-..+. ....++.+++++.+|.+++.|+.|-.|++.++........+.+|.++|.++.|+|++++|++.+.||.
T Consensus 88 ~~~iL~------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 88 EDTILA------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred ccceee------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 654443 34578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccE
Q psy4869 1238 VKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV 1317 (2435)
Q Consensus 1238 I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 1317 (2435)
|++||+.++.....+..-... ........+
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~--------------------------------------------------n~~~~s~i~ 191 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKD--------------------------------------------------NEFILSRIC 191 (933)
T ss_pred EEEEEcccchhhhhcccCCcc--------------------------------------------------cccccccee
Confidence 999999876554433211000 000112345
Q ss_pred EEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEec
Q psy4869 1318 LCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG--HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1395 (2435)
Q Consensus 1318 ~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~--h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~ 1395 (2435)
..++|+|+|..||+...|+.|.+|+.+.+.....++. +...+.++.|+|.|+|||+++.||.|.|||+++... .
T Consensus 192 ~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~ 267 (933)
T KOG1274|consen 192 TRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----H 267 (933)
T ss_pred eeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----c
Confidence 6689999999999999999999999999988888773 334499999999999999999999999999998222 2
Q ss_pred ccccceEEEEEeeCCCEEEEEeCCCcEEEE
Q psy4869 1396 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1425 (2435)
Q Consensus 1396 ~h~~~V~~laf~P~~~~laSgg~Dg~V~lW 1425 (2435)
.....|++++|.|+.+.+---...|..-+|
T Consensus 268 ~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 268 EFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cccceeEEEecCCCCCeeEEEeeccccccC
Confidence 335689999999998877555555554444
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-20 Score=218.79 Aligned_cols=203 Identities=16% Similarity=0.282 Sum_probs=162.8
Q ss_pred CCCCeeEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC
Q psy4869 404 HTGAVMDLKFSTDGCHIFTCSTD---QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK 480 (2435)
Q Consensus 404 h~~~V~~l~~s~dg~~L~s~s~D---g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~ 480 (2435)
|...|.++.|+..|.+|+++.-+ ..|.|+++...+...-++-....+.++.|+|..+.+|++. ...|++||+...
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kq 597 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQ 597 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHH
Confidence 55566666666666666665543 3577888876655555544455677889999988877643 468999999887
Q ss_pred cceEee-cCcccEEEEEECCCCCEEEEEecCCeEEEEECCC-CcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy4869 481 NQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRT-NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIW 558 (2435)
Q Consensus 481 ~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s-~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lW 558 (2435)
..+..+ .....|..++++|.|..|++|+.|+.+..||+.- .++.++++-|...|+.|+|++.-.++++|+.||++.||
T Consensus 598 elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 598 ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 766665 4566799999999999999999999999999985 46788899999999999999999999999999999998
Q ss_pred EcCCC-----CCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEE
Q psy4869 559 DIRPY-----VPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIW 608 (2435)
Q Consensus 559 dl~~~-----~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iw 608 (2435)
--+-. .+---+++.+.+|....+.+|+.+.|+|...+|++++.||+|++|
T Consensus 678 hg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 678 HGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 53321 223456788889987767789999999999999999999999998
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-20 Score=205.42 Aligned_cols=406 Identities=18% Similarity=0.227 Sum_probs=284.7
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEecc
Q psy4869 368 SKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQRIKKMKGH 446 (2435)
Q Consensus 368 l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~~v~~l~~h 446 (2435)
+.|+|+|+|+|+.+.- ++.|-|..+- .+..+...-..|..|.|.-|..+++++. .|+.|.+|++...+..+++...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tl--q~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETL--QLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchh--hHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 6899999999998765 7888876542 1111122246788899999888777654 5779999999999999999999
Q ss_pred CccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC---CeEEEEECCCCcE
Q psy4869 447 STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID---NDIKMWDLRTNSV 523 (2435)
Q Consensus 447 ~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d---g~V~lwD~~s~~~ 523 (2435)
.+.+..+.|+|+|+.++.+...|-.|.+|.+.+.+....-..+..+..++|+|||++.+..+.- ..+.|.....++.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999998877766677788999999999999987653 2344444455666
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC
Q psy4869 524 VQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK 603 (2435)
Q Consensus 524 v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg 603 (2435)
++.+.-.+-..++|.|+|||+.||. ||--- .-.+..+. . .-++..+.|+|.+++|+.|+.|+
T Consensus 171 l~~f~~dT~DltgieWsPdg~~laV---------wd~~L----eykv~aYe--~---~lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVL----EYKVYAYE--R---GLGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred HHhcCCCcccccCceECCCCcEEEE---------ecchh----hheeeeee--e---ccceeEEEeccccceEEeeccch
Confidence 7777777778899999999999885 44210 01111111 1 12678899999999999999999
Q ss_pred eEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEE
Q psy4869 604 CVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILC 683 (2435)
Q Consensus 604 ~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 683 (2435)
.+||.+.-+.++..++ .|-..++ |-++
T Consensus 233 ~lrvlnh~tWk~f~ef-lhl~s~~----------------dp~~------------------------------------ 259 (447)
T KOG4497|consen 233 MLRVLNHFTWKPFGEF-LHLCSYH----------------DPTL------------------------------------ 259 (447)
T ss_pred hhhhhceeeeeehhhh-ccchhcc----------------Cchh------------------------------------
Confidence 9998886555554443 2222221 1000
Q ss_pred EecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeeecCCceEEEE
Q psy4869 684 CHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLF 763 (2435)
Q Consensus 684 ~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (2435)
...+||. +++.+-+.+.+. -...+
T Consensus 260 --------------------~~~~ke~------------------~~~~ql~~~cLs------------f~p~~------ 283 (447)
T KOG4497|consen 260 --------------------HLLEKET------------------FSIVQLLHHCLS------------FTPTD------ 283 (447)
T ss_pred --------------------hhhhhhh------------------cchhhhcccccc------------cCCCc------
Confidence 0111111 111122211000 00000
Q ss_pred EEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccceeEEeEEEe
Q psy4869 764 YFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILG 843 (2435)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig 843 (2435)
..+.+..+ ...+||++...+.+++.++++
T Consensus 284 ----------------------------~~a~~~~~----------se~~YE~~~~pv~~~~lkp~t------------- 312 (447)
T KOG4497|consen 284 ----------------------------LEAHIWEE----------SETIYEQQMTPVKVHKLKPPT------------- 312 (447)
T ss_pred ----------------------------cccCcccc----------chhhhhhhhcceeeecccCCC-------------
Confidence 00001111 124688888888877776531
Q ss_pred cCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEecC---CcEEEEeCCCCceeE
Q psy4869 844 GGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACA---SQVKIWNRPSLSCLR 920 (2435)
Q Consensus 844 ~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~---~~V~Iwd~~~~~~~~ 920 (2435)
-.|| + ...+.-||||+|..|+|+-.+ +.+.|||++.++...
T Consensus 313 ----------D~pn-------------P-------------k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a 356 (447)
T KOG4497|consen 313 ----------DFPN-------------P-------------KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA 356 (447)
T ss_pred ----------CCCC-------------c-------------ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh
Confidence 0011 0 124667999999999998776 799999999999999
Q ss_pred EEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCe
Q psy4869 921 TIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000 (2435)
Q Consensus 921 ~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~ 1000 (2435)
.+.....+++..+.|.-..|++.+...+++.|-.. |-.+...+...-.|..+.|..++ ..++.++.|.-
T Consensus 357 vLiQk~piraf~WdP~~prL~vctg~srLY~W~ps-g~~~V~vP~~GF~i~~l~W~~~g----------~~i~l~~kDaf 425 (447)
T KOG4497|consen 357 VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS-GPRVVGVPKKGFNIQKLQWLQPG----------EFIVLCGKDAF 425 (447)
T ss_pred hhhhccceeEEEeCCCCceEEEEcCCceEEEEcCC-CceEEecCCCCceeeeEEecCCC----------cEEEEEcCCce
Confidence 88889999999999998899988888889999876 45555566666789999999886 57777777754
Q ss_pred E
Q psy4869 1001 V 1001 (2435)
Q Consensus 1001 V 1001 (2435)
.
T Consensus 426 c 426 (447)
T KOG4497|consen 426 C 426 (447)
T ss_pred E
Confidence 3
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=201.27 Aligned_cols=293 Identities=19% Similarity=0.226 Sum_probs=225.6
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec
Q psy4869 1043 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1122 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~ 1122 (2435)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|.+++|++||+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999888899999999999999999999999999999999999999988886
Q ss_pred cCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q psy4869 1123 HEDSVTGVTFVPKT-HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1123 h~~~V~~v~fsp~~-~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~ 1201 (2435)
...+|+.+.|+|.. +..+++-.+..-.+.++...... .+. ...-......-.+..|.+.|++|++|...|.+.++|.
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp-~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLP-KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-ecc-CCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 66799999999944 44455545555555555542211 110 0000000111222357889999999999999999999
Q ss_pred cCCceeeEeeccC-CCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEc
Q psy4869 1202 DYGDCHKSLLAHE-DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQL 1280 (2435)
Q Consensus 1202 ~t~~~~~~~~~h~-~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl 1280 (2435)
.+.+++..++-.. ..|..|.++..++.|+.-+.|+.|+.|+++.-.. .+.++.+..
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~--------------------~~r~~e~e~--- 239 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD--------------------EGRDGEVEP--- 239 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcc--------------------cCccCCcCh---
Confidence 9999998887666 7899999999999999999999999998763211 011111110
Q ss_pred ccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec-CCeEEEEEcccceEEEEecCCC-CC
Q psy4869 1281 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL-DTTVKIFFLDTFKFFISLYGHK-LP 1358 (2435)
Q Consensus 1281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~-dG~V~v~d~~~~k~i~~~~~h~-~~ 1358 (2435)
.++ ....-.+-+..+++|+.||.|++.|+. ...++||.-..|.++..+.|.+ ..
T Consensus 240 ------------------~~K------~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~ 295 (405)
T KOG1273|consen 240 ------------------EHK------LQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEE 295 (405)
T ss_pred ------------------hHH------HHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhh
Confidence 000 011122457889999999999998874 4579999999999999999999 45
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCC
Q psy4869 1359 VLSLDMSYDSTLIATGSGDRTVKVWGLD 1386 (2435)
Q Consensus 1359 V~~la~spdg~~L~sGg~Dg~V~iwdl~ 1386 (2435)
..++.|.|-...|++- ..|.|+||...
T Consensus 296 l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 296 LLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eeecccccceeeeeec-cCCceEEEEee
Confidence 8899999998888887 78999999754
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-20 Score=216.21 Aligned_cols=290 Identities=24% Similarity=0.351 Sum_probs=241.6
Q ss_pred cccceeeeeecCCCCceEEEEecCCCcEEEEecCCcEEEEeCCC---CceeEEEe---CCCeEEEEEEecCCCEEEEEeC
Q psy4869 872 SVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPS---LSCLRTID---TGSYALSVCFVPGDRHVLVGTK 945 (2435)
Q Consensus 872 ~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~---~~~~~~l~---~~~~v~~vafspdg~~Lavg~~ 945 (2435)
+.++++.+....|-.-|.+++.|...+++++|+.+.|+|||+.. ...+..++ .+.+++++...|||+.|++|++
T Consensus 406 IPrharq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe 485 (705)
T KOG0639|consen 406 IPRHARQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE 485 (705)
T ss_pred CCchHHhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc
Confidence 44566666667899999999999999999999999999999773 23344444 5779999999999999999999
Q ss_pred CCeEEEEEccCCc--eeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccc
Q psy4869 946 DGRLLIVDIGAGE--ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVS 1023 (2435)
Q Consensus 946 dg~V~vwd~~sg~--~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~ 1023 (2435)
-..|.|||+..-. +...+......+++++.+||. ...+++..||.|+|||+.+..+.+
T Consensus 486 astlsiWDLAapTprikaeltssapaCyALa~spDa----------kvcFsccsdGnI~vwDLhnq~~Vr---------- 545 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA----------KVCFSCCSDGNIAVWDLHNQTLVR---------- 545 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc----------ceeeeeccCCcEEEEEcccceeee----------
Confidence 9999999998654 555565556688999999986 567788899999999997433222
Q ss_pred cccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECC
Q psy4869 1024 RSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1103 (2435)
Q Consensus 1024 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~D 1103 (2435)
....+.+++.||.+++||..|-+|+-|..|+.||+..++.+.... ....|.++..+|.+.+|+.|..+
T Consensus 546 -----------qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMen 613 (705)
T KOG0639|consen 546 -----------QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMEN 613 (705)
T ss_pred -----------cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeeccc
Confidence 123467899999999999999999999999999998877655443 45679999999999999999999
Q ss_pred CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCC
Q psy4869 1104 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD 1183 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~d 1183 (2435)
+.+.|.... +.....+..|...|.++.|.+.|+++++.+.|+.+-.|...-+..+... .....|+++.++.|
T Consensus 614 s~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-------kE~SsVlsCDIS~d 685 (705)
T KOG0639|consen 614 SNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-------KESSSVLSCDISFD 685 (705)
T ss_pred CcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec-------cccCcceeeeeccC
Confidence 999887754 4445566679999999999999999999999999999998877766654 35789999999999
Q ss_pred CCEEEEEeCCCcEEEEEc
Q psy4869 1184 STLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1184 g~~l~sgs~Dg~V~iwd~ 1201 (2435)
.++|++|+.|....+|.+
T Consensus 686 dkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 686 DKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceEEEecCCCcceEEEEE
Confidence 999999999998888865
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=216.16 Aligned_cols=271 Identities=15% Similarity=0.143 Sum_probs=209.0
Q ss_pred CCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEEEeccCccccc
Q psy4869 374 GQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHI-FTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNS 452 (2435)
Q Consensus 374 g~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L-~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~s 452 (2435)
+..+++++.|+.|++||..+.. ....+..+. .+..++|+++++.+ ++++.++.|++||..+++.+..+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~-~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE-VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc-eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccE
Confidence 3578899999999999987543 344555553 46789999999877 4567789999999999988877765544 456
Q ss_pred cCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCC-eEEEEECCCCcEEEEEecCC
Q psy4869 453 CDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDN-DIKMWDLRTNSVVQKLRGHS 531 (2435)
Q Consensus 453 v~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg-~V~lwD~~s~~~v~~l~~h~ 531 (2435)
+.+++++..++++++.|+.+++||+++.+.+..+.....+.+++|+|+|++++++..++ .+.+||.++++.+..+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 78899988788888889999999999887777776566678999999999999988765 577889998887765543 3
Q ss_pred CCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCCCCCceEEEEeCcccc---cccCeEEEEEcCCCCEEEE-ecCCCeEE
Q psy4869 532 DTVTGLSLSPDGSYILSN-AMDNTVRIWDIRPYVPGERCVKVMSGHQHN---FEKNLLRCAWSVSGLYVTA-GSADKCVY 606 (2435)
Q Consensus 532 ~~V~~i~~spdg~~las~-s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~---~~~~i~~v~~spdg~~Las-gs~Dg~V~ 606 (2435)
..+.++.|+|+|++|+.+ ..|+.|++||++. .+.+..+..+... .......+.|+|+|++++. .+.++.+.
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVAT----RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCc----ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 345789999999988654 4699999999984 3444444322110 1112356889999998655 45577899
Q ss_pred EEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEE-ECCCcEEEecCC
Q psy4869 607 IWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSA-SSDKTIYLGESP 653 (2435)
Q Consensus 607 iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasg-s~Dg~I~vWd~~ 653 (2435)
+||.++++.+..+ .+...+.+++|+|++++|+++ +.+|.|++||+.
T Consensus 233 v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 233 VVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred EEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 9999999887665 345579999999999999886 468999999987
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-19 Score=197.85 Aligned_cols=297 Identities=21% Similarity=0.275 Sum_probs=213.4
Q ss_pred eecCCCCceEEEEecCCCcEEEEec-CCcEEEEeCCCCce-----e-EEEeCCCeEEEEEEecCCCEEEEEeC-CCeEEE
Q psy4869 880 HAQGHHSEVRALAFSSDNLALVSAC-ASQVKIWNRPSLSC-----L-RTIDTGSYALSVCFVPGDRHVLVGTK-DGRLLI 951 (2435)
Q Consensus 880 ~l~GH~~~V~~la~s~dg~~la~g~-~~~V~Iwd~~~~~~-----~-~~l~~~~~v~~vafspdg~~Lavg~~-dg~V~v 951 (2435)
.|.||.+.|++++|++||++||+.+ ++.|+||+++.... + ..++.+ ....|.|+||-+-+++... ..+|++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEccCCEEEE
Confidence 4789999999999999999999987 58999999886322 1 223333 5667899999887776543 445666
Q ss_pred EEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeee
Q psy4869 952 VDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1031 (2435)
Q Consensus 952 wd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~ 1031 (2435)
|-+...+- ....-| . .-||- .. +
T Consensus 160 yk~~K~~d-G~~~~~-----~-----------------------------v~~D~--~~-----------f--------- 182 (420)
T KOG2096|consen 160 YKLVKKTD-GSGSHH-----F-----------------------------VHIDN--LE-----------F--------- 182 (420)
T ss_pred EEeeeccc-CCCCcc-----c-----------------------------ccccc--cc-----------c---------
Confidence 64321110 000000 0 00110 00 0
Q ss_pred eeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q psy4869 1032 LHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1111 (2435)
Q Consensus 1032 ~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~ 1111 (2435)
.-.+.-.+-.+-...++.+|++++.|..|.+|++. ++.+..+......-+..+.+|+|+++++++---.|++|.+
T Consensus 183 ----~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 183 ----ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred ----chhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEE
Confidence 01122344456667788999999999999999998 8888888877777788899999999999999999999997
Q ss_pred c---CC-----ceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcc----eeEEEEEE-EeecccccCeEEE
Q psy4869 1112 D---YG-----DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE----RIVTLHFF-ISLYGHKLPVLSL 1178 (2435)
Q Consensus 1112 ~---t~-----~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~----~~~~~~~~-~~~~~h~~~V~~l 1178 (2435)
- .| ..+..+++|...|..++|+++...+++.+.||.+++||++-.- -...++.. ..+....+.-..+
T Consensus 258 ~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL 337 (420)
T KOG2096|consen 258 IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRL 337 (420)
T ss_pred EeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEE
Confidence 3 33 2455778999999999999999999999999999999975211 11111111 1222334445589
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEccCCceeeEee-ccCCCEEEEEEeeCCCEEEEEECCCcEEEE
Q psy4869 1179 DMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1241 (2435)
Q Consensus 1179 ~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~-~h~~~V~~i~~spd~~~lvsgs~Dg~I~vw 1241 (2435)
.++|+|..|+... ...+++|..+.|+....+. .|...|.+|+|+++|+++++++ |+.++++
T Consensus 338 ~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 338 ELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred EeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence 9999999888754 4579999999988666554 6999999999999999999876 5666665
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=211.40 Aligned_cols=297 Identities=20% Similarity=0.353 Sum_probs=225.4
Q ss_pred eeEecccCCcEEEEEECCCC--CEEEEEeCCCeEEEEecC---CceeeEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCCe
Q psy4869 355 IMLLEGHGGEIFCSKYHPDG--QYIASSGYDRQIFIWSVY---GECENIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQT 428 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg--~~Lasgs~Dg~I~iwd~~---~~~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~ 428 (2435)
..+++-|.+.|++++|+|.. +++|+|+.-|.|-+||+. .....+..+..|.++|.+|.|+| +-..|++.++||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 35677899999999999975 489999999999999994 23334566788999999999999 5568999999999
Q ss_pred EEEEECCCCce--EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe-e-cCcccEEEEEECCCC-CE
Q psy4869 429 LAVWDLEKGQR--IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS-M-NNTYQVTSVAFNDTA-EC 503 (2435)
Q Consensus 429 I~vwd~~tg~~--v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~-~-~~~~~v~sv~~sp~g-~~ 503 (2435)
|++-|++.+.. +..++.......+++|....+..++ +..=|...+||++.++.... + -|+..|++|+++|.. .+
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~-~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF-GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEE-eecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 99999987643 3344445566778888877766554 44445899999998765332 2 466699999999965 46
Q ss_pred EEEEecCCeEEEEECCCCcE----EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc
Q psy4869 504 VLTGGIDNDIKMWDLRTNSV----VQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s~~~----v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~ 579 (2435)
|++++.|++++|||+|.... +-....|...|.+..|||+|-.|++.+.|..|+|||..-......+..++ .|.+.
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~ 416 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNR 416 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCc
Confidence 88999999999999996432 23345799999999999998889999999999999984111111222222 23222
Q ss_pred ccc--CeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCC-CeeEE-EEcCCCCEEEEE-ECCCcEEEecCC
Q psy4869 580 FEK--NLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNG-SVNDV-QFHPKEPIIMSA-SSDKTIYLGESP 653 (2435)
Q Consensus 580 ~~~--~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~-~V~~l-~fspd~~~Lasg-s~Dg~I~vWd~~ 653 (2435)
... ......|.|+..++++|..-..|-|+|.+.++.+..+..... .|.++ .|||-+..+++| +..|.|+||--+
T Consensus 417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 212 245679999999999999999999999999998888755433 56654 999999855555 466899988654
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=212.01 Aligned_cols=302 Identities=19% Similarity=0.253 Sum_probs=232.2
Q ss_pred CcEEEEEcCCCeEEEEEecC-CcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEE
Q psy4869 1062 TTVKIFFLDTFKFFISLYGH-KLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF 1139 (2435)
Q Consensus 1062 g~V~i~d~~~~~~~~~l~~h-~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l 1139 (2435)
..+.+||+.++.....+++. ...-.++..- .+.+++++. ....|.+|.+...........-.+.|.+++-+|+|.+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 55899999999988888765 2222222211 235566554 35578999986554444333456789999999999999
Q ss_pred EEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC---------CceeeEe
Q psy4869 1140 FTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY---------GDCHKSL 1210 (2435)
Q Consensus 1140 ~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t---------~~~~~~~ 1210 (2435)
+.|+-.|.|++|.+.++..+..+ .+|...|+|+.|+.||.+|++|+.||.|.+|++-. -+.+..+
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVL------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred EeecccCcEEEEEeccccHHHHH------HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 99989999999999999887765 48999999999999999999999999999998632 3467888
Q ss_pred eccCCCEEEEEEeeC--CCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccc
Q psy4869 1211 LAHEDSVTGVTFVPK--THYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE 1288 (2435)
Q Consensus 1211 ~~h~~~V~~i~~spd--~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~ 1288 (2435)
..|.-+|+++...+. ...|+++|.|.++++||+..+..+..+.+
T Consensus 171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---------------------------------- 216 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---------------------------------- 216 (476)
T ss_pred ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----------------------------------
Confidence 899999999998764 45688899999999999887765544422
Q ss_pred ccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEccc----------------ceEEEEe
Q psy4869 1289 ADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT----------------FKFFISL 1352 (2435)
Q Consensus 1289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~----------------~k~i~~~ 1352 (2435)
...+.+++++|-++.+.+|+.+|.|.+.++.. +..+..+
T Consensus 217 -------------------------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~ 271 (476)
T KOG0646|consen 217 -------------------------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL 271 (476)
T ss_pred -------------------------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee
Confidence 24566777777777777777777777776633 2346677
Q ss_pred cCCCC--CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEE-EEEeCCCcEEEEECCC
Q psy4869 1353 YGHKL--PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF-FTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1353 ~~h~~--~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~l-aSgg~Dg~V~lWd~~~ 1429 (2435)
.+|.+ +|+|++++-||.+|++|+.||.|.|||+...+|++.+..-.++|+.+.+.|--... ..-+..-.+-.|++..
T Consensus 272 ~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr 351 (476)
T KOG0646|consen 272 VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR 351 (476)
T ss_pred ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhhc
Confidence 78988 99999999999999999999999999999999999888788999999998754322 2233334555666553
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-18 Score=212.61 Aligned_cols=467 Identities=16% Similarity=0.233 Sum_probs=295.5
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCC-cEEEEEeCCCcEEEEeccCCcccccc
Q psy4869 121 TVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGH-HFVVSSAKDTFVKIWDADTGDCFKTM 199 (2435)
Q Consensus 121 ~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~S~s~Dg~I~iWd~~tg~~~~~~ 199 (2435)
....|++|+++++.. .+..|+||...++.++..+.+|..++..+.+.|.... .+++.++.||.|++||...+.+++++
T Consensus 20 ~~avfSnD~k~l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cccccccCCcEEEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 345688888877665 5667999999999999999999999999999876554 67889999999999999999999988
Q ss_pred ccccceEEEEEEEe---CCCeEE-EeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeeccc
Q psy4869 200 AAHLTEVWGVCVMR---EDSYLI-SGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINEL 275 (2435)
Q Consensus 200 ~~h~~~V~~l~~~p---~~~~l~-s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 275 (2435)
..+ .++..+.+.| +-+.++ ....|..+.. +.. .++..+...+...... ....+...+.
T Consensus 99 ~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~----------~~s-~~~~~q~~~~~~~t~~------~~~~d~~~~~ 160 (792)
T KOG1963|consen 99 DNN-LPVHALVYKPAQADISANVYVSVEDYSILT----------TFS-KKLSKQSSRFVLATFD------SAKGDFLKEH 160 (792)
T ss_pred ecC-CceeEEEechhHhCccceeEeecccceeee----------ecc-cccccceeeeEeeecc------ccchhhhhhh
Confidence 654 3344444422 111122 1121111100 000 0011111000000000 0000000000
Q ss_pred ccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccce
Q psy4869 276 KNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPI 355 (2435)
Q Consensus 276 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~ 355 (2435)
.. ...+ ..+..+... ...-+..+.+|...... .. ..+.
T Consensus 161 ~~-----~~~I------------~~~~~ge~~------------~i~~~~~~~~~~v~~~~-~~------------~~~~ 198 (792)
T KOG1963|consen 161 QE-----PKSI------------VDNNSGEFK------------GIVHMCKIHIYFVPKHT-KH------------TSSR 198 (792)
T ss_pred cC-----CccE------------EEcCCceEE------------EEEEeeeEEEEEecccc-ee------------eccc
Confidence 00 0000 000000000 00012223444433322 00 1111
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC---ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG---ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~---~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
..-..|...++|.++||+++++|+|..||+|.+|.-.+ .......+.=|...|.+++|++||.+|++|+..+.+.+|
T Consensus 199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 22346777899999999999999999999999996432 233445667799999999999999999999999999999
Q ss_pred ECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee------------cCcccEEEEEECCC
Q psy4869 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM------------NNTYQVTSVAFNDT 500 (2435)
Q Consensus 433 d~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~------------~~~~~v~sv~~sp~ 500 (2435)
.+++++ -.-+.--...|..+.++|++....+ ...|+.|.+...........+ ....-.+.++++|.
T Consensus 279 q~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl-~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 279 QLETGK-KQFLPRLGSPILHIVVSPDSDLYSL-VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred eecCCC-cccccccCCeeEEEEEcCCCCeEEE-EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence 999988 4445556778889999998865544 455888888776433222222 12334678899998
Q ss_pred CCEEEEEecCCeEEEEECCCCcEEEEEe-----cC------CCCEEEEEEcCCCCEEEEEE--------CC--CcEEEEE
Q psy4869 501 AECVLTGGIDNDIKMWDLRTNSVVQKLR-----GH------SDTVTGLSLSPDGSYILSNA--------MD--NTVRIWD 559 (2435)
Q Consensus 501 g~~l~sgs~dg~V~lwD~~s~~~v~~l~-----~h------~~~V~~i~~spdg~~las~s--------~D--g~I~lWd 559 (2435)
-+.++..+..|.|.+||+-+.+.+..++ .+ ...++.++.+.+|.+++|.- .| -.+|+|-
T Consensus 357 ~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 357 TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 7888888999999999999888776663 12 23578888888999999864 23 3578898
Q ss_pred cCCCCCCCceEEEE-eCcccccccCeEEEEEcCCCC-EEEEecCCCeEEEEECCC----------CcEEEEecCCCCCee
Q psy4869 560 IRPYVPGERCVKVM-SGHQHNFEKNLLRCAWSVSGL-YVTAGSADKCVYIWDTTT----------RRIAYKLPGHNGSVN 627 (2435)
Q Consensus 560 l~~~~~~~~~v~~~-~~h~~~~~~~i~~v~~spdg~-~Lasgs~Dg~V~iwd~~s----------~~~~~~l~~h~~~V~ 627 (2435)
.............. ..|... .+..+..++... ..++.+.||.++||-... ..+...-.-|..+++
T Consensus 437 ~n~~~kt~~L~T~I~~PH~~~---~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~ 513 (792)
T KOG1963|consen 437 YNPNSKTFILNTKINNPHGNA---FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPIT 513 (792)
T ss_pred EcCCcceeEEEEEEecCCCce---eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCccc
Confidence 76433222222222 234321 233333444333 789999999999998732 123333234899999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEecCCC
Q psy4869 628 DVQFHPKEPIIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 628 ~l~fspd~~~Lasgs~Dg~I~vWd~~~ 654 (2435)
+++|+.||. +++.+.|++|.+||...
T Consensus 514 a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 514 ALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred chhhcCCCc-EEEEecCCEEEEecCCC
Confidence 999999995 55667888999999973
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-18 Score=204.16 Aligned_cols=436 Identities=15% Similarity=0.219 Sum_probs=292.5
Q ss_pred eEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEc
Q psy4869 927 YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQL 1006 (2435)
Q Consensus 927 ~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l 1006 (2435)
.+..++|-|||..|+++. +.+++|||..+|.+...+++|.+.|++|+|+.++ .+|++|+.|..|.+|.-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dG----------krFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG----------KRFASGSADKSVIIWTS 82 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCC----------ceeccCCCceeEEEecc
Confidence 566789999999988876 4588999999999999999999999999999997 69999999999999984
Q ss_pred ccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEE
Q psy4869 1007 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVL 1086 (2435)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~ 1086 (2435)
.... ...+.|.+.|.|+.|+|-...|++++- ...-+|..+...... .....+|.
T Consensus 83 klEG-----------------------~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K--~kss~R~~ 136 (1081)
T KOG1538|consen 83 KLEG-----------------------ILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK--HKSSSRII 136 (1081)
T ss_pred cccc-----------------------eeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHh--hhhheeEE
Confidence 3111 112457789999999999998888763 335667654322111 11345789
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe---ccCCCEEEEEEccC-----CCEEEEEeCCCcEEEEeCCCcce
Q psy4869 1087 SLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL---AHEDSVTGVTFVPK-----THYFFTTSKDGRVKQWDADNFER 1158 (2435)
Q Consensus 1087 sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~---~h~~~V~~v~fsp~-----~~~l~s~s~Dg~V~iwD~~~~~~ 1158 (2435)
+.+|..||.+|+.|-.||+|.+-+- .|+....+. +.+.+|++++|+|. ...+++..|..++.+|.+... .
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~ 214 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-Q 214 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-e
Confidence 9999999999999999999999874 344444443 47789999999994 357889999999999987642 2
Q ss_pred eEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcE
Q psy4869 1159 IVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRV 1238 (2435)
Q Consensus 1159 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I 1238 (2435)
+..- ..-.-...|+.+-++|.++..|+.|+.+.+|.-+ |-.+.++...+..|+.+...|+++.++.|+.||+|
T Consensus 215 Igk~------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 215 IGKD------RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred eccc------ccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence 1111 1223455688889999999999999999999765 66677887788899999999999999999999999
Q ss_pred EEEECCCCce--------------------------EEEEeeCCc--ccccCceEEEEEECCCeEEEEEcccccccc---
Q psy4869 1239 KQWDADNFER--------------------------IVTLHFNPN--VYLPLQIQVVTGGGDKSVKLWQLELVSVNR--- 1287 (2435)
Q Consensus 1239 ~vwD~~~~~~--------------------------v~~~~~~~~--~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~--- 1287 (2435)
..|++-.... -..+..+.. ...-...++++-- ..+|.+|.+.......
T Consensus 288 ACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQL-peki~iYel~se~~~~mhY 366 (1081)
T KOG1538|consen 288 ACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQL-PEKILIYELYSEDLSDMHY 366 (1081)
T ss_pred ehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecc-cceEEEEeccccccccchh
Confidence 9997632100 000000000 0000011122211 2234444433211100
Q ss_pred ccccccc-c-------------cccccceee-----eeecccccccccEEEEEec---CCcceeEEeecCCeEEEEEccc
Q psy4869 1288 EADEETK-D-------------VSRSHKVLS-----LLHTRTLKLEEQVLCARVS---PDSKLLAVSLLDTTVKIFFLDT 1345 (2435)
Q Consensus 1288 ~~~~~~~-~-------------~~~~~~~~~-----~~~~~~~~~~~~i~~ia~s---pdg~~lavgs~dG~V~v~d~~~ 1345 (2435)
...+... . .....+..+ -...++..++..|+-+... +....|++|..+|.|.-.-+++
T Consensus 367 ~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN 446 (1081)
T KOG1538|consen 367 RVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDN 446 (1081)
T ss_pred HHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecC
Confidence 0000000 0 000000000 0112233333333333322 2345789999999876555555
Q ss_pred ceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCC-CEEE
Q psy4869 1346 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT-HYFF 1414 (2435)
Q Consensus 1346 ~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~-~~la 1414 (2435)
.-++. +.....+|.|+.++...+.|++-.+.+...++|+.++.++..-+ .+++|+|+-.. .+|+
T Consensus 447 ~~PiL-l~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEp----g~nSV~wNT~~E~Mlc 511 (1081)
T KOG1538|consen 447 LFPIL-LLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEP----GANSVAWNTQCEDMLC 511 (1081)
T ss_pred Cchhh-eecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeecC----CCceEEeeccccceEE
Confidence 33322 22345689999999999999999999999999999999876433 46889998755 3444
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-16 Score=206.49 Aligned_cols=371 Identities=31% Similarity=0.584 Sum_probs=289.3
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCe-eEEEEecCCC-cEEEEEEeecCCCc-EEEEEeC-CCcEE
Q psy4869 111 STFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAEC-GLHRLSGHKG-VITDIRFMSQPGHH-FVVSSAK-DTFVK 186 (2435)
Q Consensus 111 ~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~-~~~~l~gH~~-~V~~v~~~~~~~~~-~l~S~s~-Dg~I~ 186 (2435)
..+.+|...+.++.|.+.+..++.++.|+.+.+|+..... .+..+.++.. .+..+.+. ..+.. +++..+. |+.++
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 3566799999999999999999999999999999998876 6777777554 88888884 44444 5555444 99999
Q ss_pred EEeccC-CccccccccccceEEEEEEEeCCCeEEEeeC-CCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCcee
Q psy4869 187 IWDADT-GDCFKTMAAHLTEVWGVCVMREDSYLISGSN-DAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTV 264 (2435)
Q Consensus 187 iWd~~t-g~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 264 (2435)
+||... +.....+..|...|..++|+|++..+++++. |+.+++|++....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 189 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------------------------- 189 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc----------------------------
Confidence 999998 7888889999999999999999998888886 9999999976310
Q ss_pred eeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeeccc
Q psy4869 265 SKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKD 344 (2435)
Q Consensus 265 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~ 344 (2435)
T Consensus 190 -------------------------------------------------------------------------------- 189 (466)
T COG2319 190 -------------------------------------------------------------------------------- 189 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccccceeEecccCCcEEEEEECCCCC-EEEEEeCCCeEEEEecCCceeeEE-EeeCCCCCeeEEEEccCCCEEEE
Q psy4869 345 VGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECENIG-VMSGHTGAVMDLKFSTDGCHIFT 422 (2435)
Q Consensus 345 ~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~~~-~l~~h~~~V~~l~~s~dg~~L~s 422 (2435)
+...+.+|...|.+++|+|++. ++++++.|+.|++||.... .... .+.+|...+ -..|++++..+++
T Consensus 190 ---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 258 (466)
T COG2319 190 ---------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLAS 258 (466)
T ss_pred ---------eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEE
Confidence 0112445889999999999998 5666699999999987733 2333 577888775 4489999988999
Q ss_pred EeCCCeEEEEECCCCce-EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee---cCcccEEEEEEC
Q psy4869 423 CSTDQTLAVWDLEKGQR-IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM---NNTYQVTSVAFN 498 (2435)
Q Consensus 423 ~s~Dg~I~vwd~~tg~~-v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~---~~~~~v~sv~~s 498 (2435)
++.|+.+++||...... +..+.+|...+.++.|.|.+..+++ ++.|+.+++||.......... .+...+..+.|.
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEEC
Confidence 99999999999987664 4555788889999999996666665 888899999999877765554 355568999994
Q ss_pred CCCCEEEEE-ecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCCCCCceEEEEeCc
Q psy4869 499 DTAECVLTG-GIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILS-NAMDNTVRIWDIRPYVPGERCVKVMSGH 576 (2435)
Q Consensus 499 p~g~~l~sg-s~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las-~s~Dg~I~lWdl~~~~~~~~~v~~~~~h 576 (2435)
+++..++.+ ..|+.+.+|+............+. .+..+.+.+ ...++. +..++.+.+|+... .........+
T Consensus 338 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 411 (466)
T COG2319 338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLST----GSLLRNLDGH 411 (466)
T ss_pred CCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEeccc----CeeeeeccCC
Confidence 333566665 678999999999887333333222 289999999 544444 68999999999984 2333333322
Q ss_pred ccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 577 QHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 577 ~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
. ..+..+.+++++.+++.++.++.+++|+...
T Consensus 412 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 412 T----SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred C----CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 1 4778899999999999999999999999987
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=210.87 Aligned_cols=264 Identities=23% Similarity=0.327 Sum_probs=219.2
Q ss_pred cEEEEecC--CcEEEEeCCCCceeE-EEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEE
Q psy4869 898 LALVSACA--SQVKIWNRPSLSCLR-TIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVA 974 (2435)
Q Consensus 898 ~~la~g~~--~~V~Iwd~~~~~~~~-~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~ 974 (2435)
.|+++++- ..+.+|......++. .+-.+..+.|++-+|+|.+|+.|+-.|.|++|.+.+|.++..+.+|.+.|+++.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 57777774 589999988766654 334677889999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCE
Q psy4869 975 MLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1054 (2435)
Q Consensus 975 ~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 1054 (2435)
|+.|+ ..|++|+.||.|.+|.+..
T Consensus 131 fs~dg----------s~iiTgskDg~V~vW~l~~---------------------------------------------- 154 (476)
T KOG0646|consen 131 FSDDG----------SHIITGSKDGAVLVWLLTD---------------------------------------------- 154 (476)
T ss_pred EeCCC----------cEEEecCCCccEEEEEEEe----------------------------------------------
Confidence 99997 6999999999999998631
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEE
Q psy4869 1055 LAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYD--STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTF 1132 (2435)
Q Consensus 1055 Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spd--g~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~f 1132 (2435)
|+.+..++ +-+.+..+..|.-+|+++...+. ..+|++++.|.++++||+..|..+..+. ....+.+++.
T Consensus 155 lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~l 225 (476)
T KOG0646|consen 155 LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVAL 225 (476)
T ss_pred ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEE
Confidence 11111121 23556677889999999988765 4789999999999999999998877765 5668999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCcce--e--------EEEEEEEeeccccc--CeEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy4869 1133 VPKTHYFFTTSKDGRVKQWDADNFER--I--------VTLHFFISLYGHKL--PVLSLDMSYDSTLIATGSGDRTVKVWG 1200 (2435)
Q Consensus 1133 sp~~~~l~s~s~Dg~V~iwD~~~~~~--~--------~~~~~~~~~~~h~~--~V~~l~~s~dg~~l~sgs~Dg~V~iwd 1200 (2435)
+|-++.+++|+.+|.|.+.++..... . .....+..+.+|.+ +|+|++++-||..|++|+.||.|+|||
T Consensus 226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 99999999999999999988764331 1 11112445668877 999999999999999999999999999
Q ss_pred ccCCceeeEeeccCCCEEEEEEeeCC
Q psy4869 1201 LDYGDCHKSLLAHEDSVTGVTFVPKT 1226 (2435)
Q Consensus 1201 ~~t~~~~~~~~~h~~~V~~i~~spd~ 1226 (2435)
+.+.++++++..-.++|+.+.+.|-.
T Consensus 306 i~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 306 IYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred cchHHHHHHHhhhccccceeEeeccc
Confidence 99999999987788999999997743
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-17 Score=210.16 Aligned_cols=372 Identities=30% Similarity=0.591 Sum_probs=297.6
Q ss_pred ecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCC-eEEEecCCCC-CEEEEEE-cCCCC-EEEEEeC-CCCEEEE
Q psy4869 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTD-VISTFTGHKS-AITVIQY-DPLGH-RLATGSK-DTDIVLW 144 (2435)
Q Consensus 70 ~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~-~~~~l~gH~~-~V~~l~f-~p~g~-~laSgs~-Dg~I~iW 144 (2435)
...++...+..+.+.+.+..++.+..++.+.+|+..... .+..+.++.. .+..+.+ ++++. +++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 345677778899999999999999899999999999997 7788888554 8888888 88887 5555455 9999999
Q ss_pred EccC-CeeEEEEecCCCcEEEEEEeecCCCcEEEEEeC-CCcEEEEeccCCccccccccccceEEEEEEEeCCC-eEEEe
Q psy4869 145 DVVA-ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAK-DTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDS-YLISG 221 (2435)
Q Consensus 145 d~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~-Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~-~l~s~ 221 (2435)
|... ......+.+|...|..+.|+|+. .++++++. |+.+++|+...+..+..+.+|...|.+++|.|++. .++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 9988 77888899999999999998643 36777775 99999999999999999999999999999999888 55566
Q ss_pred eCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccc
Q psy4869 222 SNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLN 301 (2435)
Q Consensus 222 s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (2435)
+.|+.+++||...+..+.
T Consensus 218 ~~d~~i~~wd~~~~~~~~-------------------------------------------------------------- 235 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLR-------------------------------------------------------------- 235 (466)
T ss_pred cCCCcEEEEECCCCcEEe--------------------------------------------------------------
Confidence 999999999765211000
Q ss_pred cCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEe
Q psy4869 302 IDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG 381 (2435)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs 381 (2435)
..+.+|...+ ...|+|++.++++++
T Consensus 236 ------------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~ 260 (466)
T COG2319 236 ------------------------------------------------------STLSGHSDSV-VSSFSPDGSLLASGS 260 (466)
T ss_pred ------------------------------------------------------eecCCCCcce-eEeECCCCCEEEEec
Confidence 0123444443 337999998999999
Q ss_pred CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe--ccCccccccCcccCC
Q psy4869 382 YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK--GHSTFVNSCDPVRRG 459 (2435)
Q Consensus 382 ~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~--~h~~~v~sv~~~~~~ 459 (2435)
.|+.+++|+..........+.+|...|..+.|.|++..+++++.|+.+++||..+........ .|...+..+.+ ...
T Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 339 (466)
T COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD 339 (466)
T ss_pred CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC
Confidence 999999999986544333337889999999999988898889999889999998887776665 78777888888 433
Q ss_pred -CeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEE-EecCCeEEEEECCCCcEEEEEecCCCCEEEE
Q psy4869 460 -QLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLT-GGIDNDIKMWDLRTNSVVQKLRGHSDTVTGL 537 (2435)
Q Consensus 460 -~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~s-gs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i 537 (2435)
..++..+..|+.+.+|+...............+..+.+.+ ...++. +..++.+.+|+............+...+...
T Consensus 340 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (466)
T COG2319 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418 (466)
T ss_pred CCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEE
Confidence 4555555788999999998877333333333388999988 544444 6889999999999998887776554789999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 538 SLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 538 ~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
.+.+++..+++++.++.+++|++..
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 419 DFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EECCCCcEEEEecCCCcEEEEeccC
Confidence 9999999999999999999999873
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=198.07 Aligned_cols=274 Identities=21% Similarity=0.306 Sum_probs=218.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEecCCce-----------eeEEEe-eCCCCCeeEEEEc-------cCCCEEEEEeCC
Q psy4869 366 FCSKYHPDGQYIASSGYDRQIFIWSVYGEC-----------ENIGVM-SGHTGAVMDLKFS-------TDGCHIFTCSTD 426 (2435)
Q Consensus 366 ~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-----------~~~~~l-~~h~~~V~~l~~s-------~dg~~L~s~s~D 426 (2435)
..++|+|||.-|++-+.|..+++|++.... .....+ ......|.+.+|- |+..++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 357999999999999999999999874210 011111 1234678888885 467788999999
Q ss_pred CeEEEEECCCCceEEEEec--cCcc---ccccCcccCCCeEEEEEeCCCeEEEEeC-CCCcceEe--------ecCcccE
Q psy4869 427 QTLAVWDLEKGQRIKKMKG--HSTF---VNSCDPVRRGQLLIASGSDDCTVKVWDP-RKKNQAVS--------MNNTYQV 492 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~--h~~~---v~sv~~~~~~~~llasgs~Dg~I~vwD~-~~~~~~~~--------~~~~~~v 492 (2435)
.-|++||.-+|+.-..+.+ |.+. ..++.|+|+|..++ ++....|++||+ |.+..-.. +...+-+
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 9999999999988777654 4333 35789999998876 478899999999 44432111 1235668
Q ss_pred EEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCCCCCceE
Q psy4869 493 TSVAFNDTAE-CVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM-DNTVRIWDIRPYVPGERCV 570 (2435)
Q Consensus 493 ~sv~~sp~g~-~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~-Dg~I~lWdl~~~~~~~~~v 570 (2435)
.|++|+|... .+++|+....+-||.-..++++..+.+|.+.|+.++|.+||+.|.+|+. |..|..||+|. ...++
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~---~~~pv 287 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY---SRDPV 287 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh---ccchh
Confidence 9999999654 8999999999999999999999999999999999999999999999885 89999999995 34556
Q ss_pred EEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC-CcEEEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 571 KVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT-RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 571 ~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s-~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
..+..|..... +-.-....|+|++|++|+.||.|++||++. +..+..+..|...|+.++++|--+++|+++...
T Consensus 288 ~~L~rhv~~TN-QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 288 YALERHVGDTN-QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred hhhhhhccCcc-ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 66666654332 233466789999999999999999999998 787888889999999999999999999987543
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-20 Score=230.83 Aligned_cols=256 Identities=25% Similarity=0.475 Sum_probs=225.9
Q ss_pred CCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCcccccc
Q psy4869 374 GQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSC 453 (2435)
Q Consensus 374 g~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv 453 (2435)
+..++....+-.+++||.+. +..|...|.++..-..++.+++|+.|..+-+|.+..-..+..+.+|...|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~-------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE-------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh-------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 44455566677788888643 45688888888876677889999999999999988877888899999999999
Q ss_pred CcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCC
Q psy4869 454 DPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532 (2435)
Q Consensus 454 ~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~ 532 (2435)
.|.... .+|++|+.+|+|++||+...+.+..+ .|...+.++.|+|.+.|++.|+.|+.+.+||++...+.+.+.+|..
T Consensus 77 ~f~~~E-~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcch-hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 998775 78899999999999999988877776 5788899999999999999999999999999998889999999999
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 533 ~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
.|.++.|+|+|+++++++.|.+++|||+. .++....|.+|. ..+..+.|+|..-+|+.||.|++|++||+++
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~----agk~~~ef~~~e----~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLT----AGKLSKEFKSHE----GKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccc----cccccccccccc----ccccccccCchhhhhccCCCCceeeeeccce
Confidence 99999999999999999999999999997 567778888775 4678888999999999999999999999999
Q ss_pred CcEEEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 613 RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 613 ~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
.+.+.........|.+++|+|++..+++|..+.
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 999998888889999999999999988887654
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=195.39 Aligned_cols=266 Identities=20% Similarity=0.319 Sum_probs=201.8
Q ss_pred ecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC---ceeeEEEeeCCCCCeeEEEEcc--CCCEEEEEeCCCeEEEE
Q psy4869 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG---ECENIGVMSGHTGAVMDLKFST--DGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~---~~~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s~Dg~I~vw 432 (2435)
-.+|.+-|.|+.|.+.|+.+|+|+.|++|+|||.+. ........+.|.+.|..+.|.+ =|+.+++|+.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 458999999999999999999999999999999653 3334556788999999999976 58899999999999999
Q ss_pred ECCC------C---ceEEEEeccCccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCcceEe------e--------cC
Q psy4869 433 DLEK------G---QRIKKMKGHSTFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKNQAVS------M--------NN 488 (2435)
Q Consensus 433 d~~t------g---~~v~~l~~h~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~~~~~------~--------~~ 488 (2435)
.-.. + ....++......|.++.|.|.. ...+++++.||.+|||+......+.. + .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 8521 1 2334566777889999999864 46789999999999999754332221 1 24
Q ss_pred cccEEEEEECCC---CCEEEEEecC-----CeEEEEECCC----CcEEEEEecCCCCEEEEEEcCC----CCEEEEEECC
Q psy4869 489 TYQVTSVAFNDT---AECVLTGGID-----NDIKMWDLRT----NSVVQKLRGHSDTVTGLSLSPD----GSYILSNAMD 552 (2435)
Q Consensus 489 ~~~v~sv~~sp~---g~~l~sgs~d-----g~V~lwD~~s----~~~v~~l~~h~~~V~~i~~spd----g~~las~s~D 552 (2435)
..+..|+.|+|. ..+||+|+.+ +.++||.... ...+.++.+|.++|+.|+|.|+ -..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 556789999974 4578888766 5788887554 3456677899999999999996 3579999999
Q ss_pred CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEc
Q psy4869 553 NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632 (2435)
Q Consensus 553 g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fs 632 (2435)
| |+||.++... ..+ ... . +.++..-+.+ .-+.+..+.+|++.|..++|+
T Consensus 249 g-v~I~~v~~~~---s~i--~~e-------e------------~~~~~~~~~l------~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 249 G-VRIFKVKVAR---SAI--EEE-------E------------VLAPDLMTDL------PVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred c-EEEEEEeecc---chh--hhh-------c------------ccCCCCcccc------ceEEeeeccCCCCceEEEEEe
Confidence 9 9999997311 001 000 0 0111111111 124566788999999999999
Q ss_pred CCCCEEEEEECCCcEEEecCCC
Q psy4869 633 PKEPIIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 633 pd~~~Lasgs~Dg~I~vWd~~~ 654 (2435)
-.|..|++.|+||.||+|....
T Consensus 298 mtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 298 MTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eeeeEEeecCCCceeeehhhhh
Confidence 9999999999999999999763
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=222.94 Aligned_cols=236 Identities=25% Similarity=0.477 Sum_probs=208.1
Q ss_pred ecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC
Q psy4869 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG 437 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg 437 (2435)
+..|...|.|+..-..++.+++|+.|-.+-+|.+.... .+..+.+|..+|.+|.|+.+..+|++|+.+|+|++||++.+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 34688889999987788999999999999999986543 34458999999999999999999999999999999999999
Q ss_pred ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEecCCeEEEE
Q psy4869 438 QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGIDNDIKMW 516 (2435)
Q Consensus 438 ~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~dg~V~lw 516 (2435)
+.++.+.+|...+.+++|+|.+. ++++|+.|..+++||++...+...+. |...+.+++|+|+|++++.|++|..++||
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW 181 (825)
T ss_pred hhhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence 99999999999999999999984 55999999999999999999988885 66778999999999999999999999999
Q ss_pred ECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEE
Q psy4869 517 DLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYV 596 (2435)
Q Consensus 517 D~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~L 596 (2435)
|+..|+.+..|+.|.+.|..+.|+|..-++++||.|+++++||++.+ ..+..... ....+.+..|+|+|+.+
T Consensus 182 d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf----e~I~s~~~----~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 182 DLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF----EVISSGKP----ETDGVRSLAFNPDGKIV 253 (825)
T ss_pred cccccccccccccccccccccccCchhhhhccCCCCceeeeecccee----EEeeccCC----ccCCceeeeecCCceee
Confidence 99999999999999999999999999999999999999999999843 22222211 13578999999999999
Q ss_pred EEecCCC
Q psy4869 597 TAGSADK 603 (2435)
Q Consensus 597 asgs~Dg 603 (2435)
++|..+.
T Consensus 254 ~~G~q~s 260 (825)
T KOG0267|consen 254 LSGEQIS 260 (825)
T ss_pred ecCchhh
Confidence 8886554
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=204.95 Aligned_cols=314 Identities=22% Similarity=0.273 Sum_probs=243.6
Q ss_pred ecCCCCceEEEEecCCCcEEEEec-CCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCE--EEEEeCCCeEEEEEccCC
Q psy4869 881 AQGHHSEVRALAFSSDNLALVSAC-ASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRH--VLVGTKDGRLLIVDIGAG 957 (2435)
Q Consensus 881 l~GH~~~V~~la~s~dg~~la~g~-~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~--Lavg~~dg~V~vwd~~sg 957 (2435)
..||.+.|.||.+.+.|.+||+|. +|.|+||.+.+++++..++....|.||+|+|.++. ||++..+. +.|.+..-|
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G 474 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFG 474 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCcccc
Confidence 479999999999999999999998 59999999999999999999999999999997663 55555444 666555444
Q ss_pred ceeecccccccceeEEEEecCCCCCCCcCCcceEEEEE----eCCCeEEEEEcccccccccccccccccccccceeeeee
Q psy4869 958 EILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTG----GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLH 1033 (2435)
Q Consensus 958 ~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sg----s~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1033 (2435)
..+..-. +...|+++ ..|+.+..|.-.... +.. ..-
T Consensus 475 ~~~e~~~-----------------------t~ell~~~~~~~~p~~~~~~W~~~~~~----------e~~-------~~v 514 (733)
T KOG0650|consen 475 DRLEVGP-----------------------TKELLASAPNESEPDAAVVTWSRASLD----------ELE-------KGV 514 (733)
T ss_pred chhhhcc-----------------------hhhhhhcCCCccCCcccceeechhhhh----------hhc-------cce
Confidence 2211100 01122222 235677778643111 000 001
Q ss_pred ccccccCCCEEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy4869 1034 TRTLKLEEQVLCARVSPDSKLLAVSLLD---TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1110 (2435)
Q Consensus 1034 ~~~~~~~~~v~~l~~spdg~~Lavg~~d---g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd 1110 (2435)
+..+.+...|..+.|+..|.||++...+ ..|.|+++...+...-|....+.|.++.|+|...+|++++.. .|+|||
T Consensus 515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYd 593 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYD 593 (733)
T ss_pred EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEe
Confidence 3356778899999999999999988754 678899988776666666667789999999999888887755 799999
Q ss_pred ccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEE
Q psy4869 1111 LDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG 1190 (2435)
Q Consensus 1111 ~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 1190 (2435)
+..+..++.+......|..++.+|.|..|+.++.|+.+.+||+.-.... ...+..|...+.+++|++.-.++++|
T Consensus 594 L~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP-----yk~lr~H~~avr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 594 LSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP-----YKTLRLHEKAVRSVAFHKRYPLFASG 668 (733)
T ss_pred hhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch-----hHHhhhhhhhhhhhhhccccceeeee
Confidence 9988888888777889999999999999999999999999999754322 22345799999999999999999999
Q ss_pred eCCCcEEEEEcc------CCc---eeeEeeccCCC----EEEEEEeeCCCEEEEEECCCcEEEE
Q psy4869 1191 SGDRTVKVWGLD------YGD---CHKSLLAHEDS----VTGVTFVPKTHYFFTTSKDGRVKQW 1241 (2435)
Q Consensus 1191 s~Dg~V~iwd~~------t~~---~~~~~~~h~~~----V~~i~~spd~~~lvsgs~Dg~I~vw 1241 (2435)
+.||.+.|+.-. ..- .++.+.+|... |-.+.|+|...+|++++.||+|++|
T Consensus 669 sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 669 SDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 999999998532 111 35677788765 9999999999999999999999998
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=195.59 Aligned_cols=248 Identities=20% Similarity=0.343 Sum_probs=196.6
Q ss_pred ecccCCcEEEEEECCCCC--EEEEEeCCCeEEEEecCC---------------ceeeEEEeeCCCCCeeEEEEcc-CCCE
Q psy4869 358 LEGHGGEIFCSKYHPDGQ--YIASSGYDRQIFIWSVYG---------------ECENIGVMSGHTGAVMDLKFST-DGCH 419 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~--~Lasgs~Dg~I~iwd~~~---------------~~~~~~~l~~h~~~V~~l~~s~-dg~~ 419 (2435)
.-+|.+.|+.+...+-|+ +.|+=+..|+|.|||+.. ...++..+.+|.+.=+.|+||| ....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 447889999888888654 566667889999999742 2345677889999999999999 2335
Q ss_pred EEEEeCCCeEEEEECCCCceEE---EEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC---cceEeecCcccEE
Q psy4869 420 IFTCSTDQTLAVWDLEKGQRIK---KMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK---NQAVSMNNTYQVT 493 (2435)
Q Consensus 420 L~s~s~Dg~I~vwd~~tg~~v~---~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~---~~~~~~~~~~~v~ 493 (2435)
|++|..-+.|++|...+|.... .+.+|...|-.++|+|....+|++||.|++|+|||+|.+ .++....|...|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 8888888899999998886543 456899999999999999999999999999999999987 3445557888999
Q ss_pred EEEECCCCCEEEEEecCCeEEEEECCC---CcEEEEEecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCC----
Q psy4869 494 SVAFNDTAECVLTGGIDNDIKMWDLRT---NSVVQKLRGHSDTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVP---- 565 (2435)
Q Consensus 494 sv~~sp~g~~l~sgs~dg~V~lwD~~s---~~~v~~l~~h~~~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~---- 565 (2435)
.+.|+.+-.+||+|+.||.++|||+|. ++++..++-|+.+|++|.|+|. ...|++++.|.+|.|||+.....
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999988999999999999999985 6789999999999999999995 56788899999999999863211
Q ss_pred --------CCceEEEEeCcccccccCeEEEEEcCCC-CEEEEecCCCeEEEE
Q psy4869 566 --------GERCVKVMSGHQHNFEKNLLRCAWSVSG-LYVTAGSADKCVYIW 608 (2435)
Q Consensus 566 --------~~~~v~~~~~h~~~~~~~i~~v~~spdg-~~Lasgs~Dg~V~iw 608 (2435)
..-+.+.+..|+. .+.+..+.|++.- .+|++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqG--Qke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQG--QKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecc--hhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 0011123333432 2467788999854 4677777787 3444
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-18 Score=194.66 Aligned_cols=247 Identities=18% Similarity=0.287 Sum_probs=197.0
Q ss_pred EecCCCCCEEEEEEcCCC--CEEEEEeCCCCEEEEEccC----------------CeeEEEEecCCCcEEEEEEeecCCC
Q psy4869 112 TFTGHKSAITVIQYDPLG--HRLATGSKDTDIVLWDVVA----------------ECGLHRLSGHKGVITDIRFMSQPGH 173 (2435)
Q Consensus 112 ~l~gH~~~V~~l~f~p~g--~~laSgs~Dg~I~iWd~~~----------------~~~~~~l~gH~~~V~~v~~~~~~~~ 173 (2435)
...+|.+.|+-+.-.+.| .+.|+=+..|.|.|||+.. .++++++.+|++.=+.|+|+|...+
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 345689999999888876 5566778899999999743 3467889999999999999986555
Q ss_pred cEEEEEeCCCcEEEEeccCCcc---ccccccccceEEEEEEEeC-CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhh
Q psy4869 174 HFVVSSAKDTFVKIWDADTGDC---FKTMAAHLTEVWGVCVMRE-DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQ 249 (2435)
Q Consensus 174 ~~l~S~s~Dg~I~iWd~~tg~~---~~~~~~h~~~V~~l~~~p~-~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~ 249 (2435)
.|+||..-+.|++|...+|.- -..+.+|...|-.|+|+|. ...|++||.||+|+|||+|.+..
T Consensus 226 -~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~------------ 292 (440)
T KOG0302|consen 226 -RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK------------ 292 (440)
T ss_pred -ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc------------
Confidence 478998999999999988764 2456789999999999996 55799999999999999996410
Q ss_pred cceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEE
Q psy4869 250 LNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTV 329 (2435)
Q Consensus 250 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i 329 (2435)
T Consensus 293 -------------------------------------------------------------------------------- 292 (440)
T KOG0302|consen 293 -------------------------------------------------------------------------------- 292 (440)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC--ceeeEEEeeCCCCC
Q psy4869 330 YDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG--ECENIGVMSGHTGA 407 (2435)
Q Consensus 330 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~--~~~~~~~l~~h~~~ 407 (2435)
.+.+..+.|.+.|+.+.|+..-.+||+|+.||.++|||++. ...++..++.|..+
T Consensus 293 -----------------------~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 293 -----------------------KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred -----------------------cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 01122367899999999999988999999999999999984 33577889999999
Q ss_pred eeEEEEcc-CCCEEEEEeCCCeEEEEECCCCce----------------EEEEecc--CccccccCcccCCCeEEEEEeC
Q psy4869 408 VMDLKFST-DGCHIFTCSTDQTLAVWDLEKGQR----------------IKKMKGH--STFVNSCDPVRRGQLLIASGSD 468 (2435)
Q Consensus 408 V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg~~----------------v~~l~~h--~~~v~sv~~~~~~~~llasgs~ 468 (2435)
|++|.|+| +...|++++.|.+|.+||+.-..- -+-+--| ...+..+.|+++-+.++++.+.
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc
Confidence 99999998 456788899999999999852110 0111223 4567889999999999999999
Q ss_pred CCeEEE
Q psy4869 469 DCTVKV 474 (2435)
Q Consensus 469 Dg~I~v 474 (2435)
||.-.+
T Consensus 430 dGfnVf 435 (440)
T KOG0302|consen 430 DGFNVF 435 (440)
T ss_pred cceeEE
Confidence 885433
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=199.13 Aligned_cols=305 Identities=15% Similarity=0.184 Sum_probs=230.8
Q ss_pred EEE-EEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc----ccccccccceEEEEEEEeC-
Q psy4869 141 IVL-WDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC----FKTMAAHLTEVWGVCVMRE- 214 (2435)
Q Consensus 141 I~i-Wd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~----~~~~~~h~~~V~~l~~~p~- 214 (2435)
++. .|+.......+.+-|.++|++++|+|..+..++++|..-|+|-+||+.+.+. +..+..|.++|.++.|+|.
T Consensus 167 ~~~dl~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n 246 (498)
T KOG4328|consen 167 IKFDLDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN 246 (498)
T ss_pred cccccccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC
Confidence 444 4555556666778899999999999988878999999999999999964332 5566899999999999995
Q ss_pred CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeee
Q psy4869 215 DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALC 294 (2435)
Q Consensus 215 ~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 294 (2435)
-..+++.|.||+|++-|++...- +.+ ..
T Consensus 247 ~s~i~ssSyDGtiR~~D~~~~i~----------e~v-------------------------~s----------------- 274 (498)
T KOG4328|consen 247 TSQIYSSSYDGTIRLQDFEGNIS----------EEV-------------------------LS----------------- 274 (498)
T ss_pred hhheeeeccCceeeeeeecchhh----------HHH-------------------------hh-----------------
Confidence 55799999999999999875310 000 00
Q ss_pred ecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCC
Q psy4869 295 ISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDG 374 (2435)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg 374 (2435)
..+ -...+..+.|+.+.
T Consensus 275 ---------------------------~~~------------------------------------d~~~fs~~d~~~e~ 291 (498)
T KOG4328|consen 275 ---------------------------LDT------------------------------------DNIWFSSLDFSAES 291 (498)
T ss_pred ---------------------------cCc------------------------------------cceeeeeccccCCC
Confidence 000 01123345566666
Q ss_pred CEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCCc----eEEEEeccCcc
Q psy4869 375 QYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQTLAVWDLEKGQ----RIKKMKGHSTF 449 (2435)
Q Consensus 375 ~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg~----~v~~l~~h~~~ 449 (2435)
..++.|+.=|...+||.+........+.-|...|..|+++| ...+|++++.|++++|||++.-. ++-..-.|...
T Consensus 292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs 371 (498)
T KOG4328|consen 292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS 371 (498)
T ss_pred ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence 66667777779999999877666677788999999999999 45678999999999999987532 23334579999
Q ss_pred ccccCcccCCCeEEEEEeCCCeEEEEeCC----CCcceEeecCcc------cEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 450 VNSCDPVRRGQLLIASGSDDCTVKVWDPR----KKNQAVSMNNTY------QVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 450 v~sv~~~~~~~~llasgs~Dg~I~vwD~~----~~~~~~~~~~~~------~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
|++..|+|.+.. |++.+.|..|+|||.. ...+...+.|.. ..-..+|.|+..++++|..-..|-|||..
T Consensus 372 V~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 372 VNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred eeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 999999999977 8889999999999983 334444444332 23456899999999999999999999999
Q ss_pred CCcEEEEEecCCC-CEEE-EEEcCCCCEEEE-EECCCcEEEEEcC
Q psy4869 520 TNSVVQKLRGHSD-TVTG-LSLSPDGSYILS-NAMDNTVRIWDIR 561 (2435)
Q Consensus 520 s~~~v~~l~~h~~-~V~~-i~~spdg~~las-~s~Dg~I~lWdl~ 561 (2435)
.++.+..+..... .|.+ +.|+|-+..+++ ++.-|.|.||--.
T Consensus 451 ~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 451 GGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 9998888755443 5555 589998885555 4568888888643
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=200.40 Aligned_cols=238 Identities=24% Similarity=0.344 Sum_probs=189.5
Q ss_pred CCCEEEEEeCCCeEEEEecCC--ceeeEE------------------EeeCCCCCeeEEEEccCC-CEEEEEeCCCeEEE
Q psy4869 373 DGQYIASSGYDRQIFIWSVYG--ECENIG------------------VMSGHTGAVMDLKFSTDG-CHIFTCSTDQTLAV 431 (2435)
Q Consensus 373 dg~~Lasgs~Dg~I~iwd~~~--~~~~~~------------------~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~I~v 431 (2435)
.|+|+|.|+.|..|.|||+.- ...+.. ...+|+..|.+|+|+.+- ..|++||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 378999999999999999751 111111 123699999999998754 47889999999999
Q ss_pred EECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC-cceEeecCcccEEEEEECCCCC-EEEEEec
Q psy4869 432 WDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK-NQAVSMNNTYQVTSVAFNDTAE-CVLTGGI 509 (2435)
Q Consensus 432 wd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~-~~~~~~~~~~~v~sv~~sp~g~-~l~sgs~ 509 (2435)
||+.+|++...+..|...|.++.|+|..+..+++|+.|+++++.|.|.. ..-......+.|..++|+|... .++++..
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 9999999999999999999999999999999999999999999999953 3334457788999999999654 5778889
Q ss_pred CCeEEEEECCCC-cEEEEEecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEE
Q psy4869 510 DNDIKMWDLRTN-SVVQKLRGHSDTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRC 587 (2435)
Q Consensus 510 dg~V~lwD~~s~-~~v~~l~~h~~~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v 587 (2435)
||.|+-+|+|.. +++.+++.|.++|.+|++++. ..++++++.|+.|++|++....+..... |.... +...+.
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-----~~~~~-~rl~c~ 424 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-----HSFKL-GRLHCF 424 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-----ccccc-cceeec
Confidence 999999999975 899999999999999999985 5678899999999999998543322111 21111 123455
Q ss_pred EEcCCCC-EEEEecCCCeEEEEECCCCcEE
Q psy4869 588 AWSVSGL-YVTAGSADKCVYIWDTTTRRIA 616 (2435)
Q Consensus 588 ~~spdg~-~Lasgs~Dg~V~iwd~~s~~~~ 616 (2435)
++.|+-. +|+.|+..+.++|||+.+...+
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhH
Confidence 5666554 5667788888999999877554
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=187.10 Aligned_cols=293 Identities=20% Similarity=0.333 Sum_probs=225.7
Q ss_pred eEecccCCcEEEEEECC-----CCCEEEEEeCCCeEEEEecCCce--eeEEEe--eCCCCCeeEEEEccC----CCEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHP-----DGQYIASSGYDRQIFIWSVYGEC--ENIGVM--SGHTGAVMDLKFSTD----GCHIFT 422 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fsp-----dg~~Lasgs~Dg~I~iwd~~~~~--~~~~~l--~~h~~~V~~l~~s~d----g~~L~s 422 (2435)
.+..+|+.+|+.++|++ ..+.+|+.| ..++.+|...... ..+..+ ..|......++|+-| ..++++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45678999999999985 234556554 4578888765432 222222 247788899999864 347888
Q ss_pred EeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee----cCcccEEEEEEC
Q psy4869 423 CSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM----NNTYQVTSVAFN 498 (2435)
Q Consensus 423 ~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~----~~~~~v~sv~~s 498 (2435)
++.-|.|+|.|+.+++....+.+|...|+.+.+.|..+++++++|.|..||+|++++..++..+ .|...|-++.|+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999999888 488899999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCcEE-------------------------E---EEecCCCCEEEEEEcCCCCEEEEEE
Q psy4869 499 DTAECVLTGGIDNDIKMWDLRTNSVV-------------------------Q---KLRGHSDTVTGLSLSPDGSYILSNA 550 (2435)
Q Consensus 499 p~g~~l~sgs~dg~V~lwD~~s~~~v-------------------------~---~l~~h~~~V~~i~~spdg~~las~s 550 (2435)
++|.+|++++.|..|.+|++...+.. . +-.-|...|.|+.|- |+++++=|
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks 268 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS 268 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc
Confidence 99999999999999999999832210 0 113477777777775 78999999
Q ss_pred CCCcEEEEEcCCCCC-------CCceEEEEeCccc--ccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEE-E-Ee
Q psy4869 551 MDNTVRIWDIRPYVP-------GERCVKVMSGHQH--NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIA-Y-KL 619 (2435)
Q Consensus 551 ~Dg~I~lWdl~~~~~-------~~~~v~~~~~h~~--~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~-~-~l 619 (2435)
.++.|..|....... ...+...+ ++.. ..+......+|.|-++.||.|...|.|.+||+++.++. . ++
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~-~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTIL-GEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeee-eEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 999999998732111 11111111 1111 11123456677788999999999999999999987653 1 11
Q ss_pred --cCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 620 --PGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 620 --~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
......|...+|+.|+.+|+...+|++|.-||.
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 123467999999999999999999999999985
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-17 Score=188.98 Aligned_cols=317 Identities=22% Similarity=0.282 Sum_probs=235.2
Q ss_pred CcCEEEEEEcCCCC-EEEEEECCCcEEEEEccCCc---------eeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q psy4869 1082 KLPVLSLDMSYDST-LIATGSGDRTVKVWGLDYGD---------CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1151 (2435)
Q Consensus 1082 ~~~V~sl~~spdg~-~L~Sgs~Dg~I~vWd~~t~~---------~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iw 1151 (2435)
..+|.++.|.++.. .|++|+.|..|++|.++.+. .+..+..|...|+.+.|+|+|+.|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999988765 99999999999999986432 334566799999999999999999999999999999
Q ss_pred eCCCcce----------eEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEE
Q psy4869 1152 DADNFER----------IVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1221 (2435)
Q Consensus 1152 D~~~~~~----------~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~ 1221 (2435)
....-.. ...+...+...+|...|..++|++++.++++|+.|+.+++||+..|+.+..+.+|...|..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 8651000 111222345567999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccc
Q psy4869 1222 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHK 1301 (2435)
Q Consensus 1222 ~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~ 1301 (2435)
|.|-++++++-+.|...+.+.+...+.+..+... ..++-.+..+.-+.+.|-
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~--------~m~~~~~~~~e~~s~rLf-------------------- 224 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD--------IMPAKAFNEREGKSTRLF-------------------- 224 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeee--------EeeecccCCCCcceeeee--------------------
Confidence 9999999999999998887777665554433210 001111111111111110
Q ss_pred eeeeeecccccccccEEEEEecCCcceeEEee----cC-----CeEEEEEccc-ceEEEEecCCCCCeEEEEEecC----
Q psy4869 1302 VLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL----LD-----TTVKIFFLDT-FKFFISLYGHKLPVLSLDMSYD---- 1367 (2435)
Q Consensus 1302 ~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs----~d-----G~V~v~d~~~-~k~i~~~~~h~~~V~~la~spd---- 1367 (2435)
....++...+.++|+|||..|++.. .. +..++|+... .+++..+.+...++..+.++|=
T Consensus 225 -------hDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el 297 (434)
T KOG1009|consen 225 -------HDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL 297 (434)
T ss_pred -------ecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence 1123456778899999999999854 12 2345666543 5677777777777777777651
Q ss_pred -------------CCEEEEEeCCCcEEEEeCCCCceEEEec-ccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeE
Q psy4869 1368 -------------STLIATGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1433 (2435)
Q Consensus 1368 -------------g~~L~sGg~Dg~V~iwdl~~gk~~~~~~-~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l 1433 (2435)
.+++++-...+.|++||.++-..+.... -|-.+++.++|+++|..|+..+.||..-+--++.++.-
T Consensus 298 rp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 298 RPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 2344444556789999999977766543 58889999999999999999999998777666655443
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=195.28 Aligned_cols=235 Identities=17% Similarity=0.274 Sum_probs=185.1
Q ss_pred CCeEEEEEcCCeEEEEECCCCC---eEEEe------------------cCCCCCEEEEEEcCCC-CEEEEEeCCCCEEEE
Q psy4869 87 SSQLAVAYTNGSLKTFSLDTTD---VISTF------------------TGHKSAITVIQYDPLG-HRLATGSKDTDIVLW 144 (2435)
Q Consensus 87 ~~~lav~~~~G~i~i~d~~~~~---~~~~l------------------~gH~~~V~~l~f~p~g-~~laSgs~Dg~I~iW 144 (2435)
|+++|+|.-+..|.|||++-.. |...| .||++.|.+|+|+..- +.|||||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 5699999999999999998543 22233 3799999999999854 789999999999999
Q ss_pred EccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCC-eEEEeeC
Q psy4869 145 DVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDS-YLISGSN 223 (2435)
Q Consensus 145 d~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~ 223 (2435)
|+.++++...+..|.+.|.++.|+|. ...+|++|+.|++|++.|.+.-.+....-.-.+.|-.++|.+... .++++..
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 99999999999999999999999975 567899999999999999985433333334457899999999755 5788999
Q ss_pred CCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccC
Q psy4869 224 DAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNID 303 (2435)
Q Consensus 224 Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (2435)
||+|+-+|+|...
T Consensus 351 dG~v~~~D~R~~~------------------------------------------------------------------- 363 (463)
T KOG0270|consen 351 DGTVYYFDIRNPG------------------------------------------------------------------- 363 (463)
T ss_pred CceEEeeecCCCC-------------------------------------------------------------------
Confidence 9999999988421
Q ss_pred ccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCC-CCEEEEEeC
Q psy4869 304 DFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPD-GQYIASSGY 382 (2435)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspd-g~~Lasgs~ 382 (2435)
.|+..++.|.++|.+|.+++. ..+|++++.
T Consensus 364 -------------------------------------------------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 364 -------------------------------------------------KPVWTLKAHDDEISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred -------------------------------------------------CceeEEEeccCCcceEEecCCCCcceeeccc
Confidence 133457789999999999986 457899999
Q ss_pred CCeEEEEecCCceeeEEEeeCC---CCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCceE
Q psy4869 383 DRQIFIWSVYGECENIGVMSGH---TGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h---~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
|+.|++|++....... ...| -+...+.++.|+-. .++.|+..+.++|||+.+...+
T Consensus 395 d~~Vklw~~~~~~~~~--v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSPKS--VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cceEEEEeecCCCCcc--cccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9999999986432211 1122 24466777777654 5667777888999998776544
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-15 Score=182.30 Aligned_cols=271 Identities=17% Similarity=0.251 Sum_probs=213.4
Q ss_pred ceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe-CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccC-Cceeeccc
Q psy4869 887 EVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGA-GEILEDIP 964 (2435)
Q Consensus 887 ~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~-~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~s-g~~v~~~~ 964 (2435)
.|..++|-|||..|+.+.++.+.|||...|.++..+. +...+.||+++.||++.|+|+.|..|.||..+- |-+. -
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk---Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK---Y 90 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee---e
Confidence 6888999999999999999999999999999999888 888999999999999999999999999998653 3222 3
Q ss_pred ccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEE
Q psy4869 965 AHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1044 (2435)
Q Consensus 965 ~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 1044 (2435)
.|.+.|.|+.|.|-. .++++++- ...-+|..+... +. ..+....+.
T Consensus 91 SH~D~IQCMsFNP~~----------h~LasCsL-sdFglWS~~qK~-----------V~------------K~kss~R~~ 136 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPIT----------HQLASCSL-SDFGLWSPEQKS-----------VS------------KHKSSSRII 136 (1081)
T ss_pred ccCCeeeEeecCchH----------HHhhhcch-hhccccChhhhh-----------HH------------hhhhheeEE
Confidence 688999999998764 57888776 445677643211 10 122346788
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE--EEecCCcCEEEEEEcCCC-----CEEEEEECCCcEEEEEccCCcee
Q psy4869 1045 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI--SLYGHKLPVLSLDMSYDS-----TLIATGSGDRTVKVWGLDYGDCH 1117 (2435)
Q Consensus 1045 ~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~--~l~~h~~~V~sl~~spdg-----~~L~Sgs~Dg~I~vWd~~t~~~~ 1117 (2435)
+.+|..||.+|+.|..+|.|.|-+....+.+. .--|...+|.+++|+|.. ..+++.....++.++.+. |+.+
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQI 215 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceee
Confidence 99999999999999999999998754332222 223577899999999953 578888999999998875 5444
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEE
Q psy4869 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1197 (2435)
Q Consensus 1118 ~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~ 1197 (2435)
..-+.-.-.-.++.+.++|.+++.|+.|+.+++|.-+ +-.+..+ ......|+.++..|++..++.|+.||+|.
T Consensus 216 gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTv------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 216 GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTV------GEQDSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred cccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeec------cccceeEEEEEEccCCceEEEEEccCeee
Confidence 4333334455788999999999999999999999743 3333332 34677899999999999999999999999
Q ss_pred EEEcc
Q psy4869 1198 VWGLD 1202 (2435)
Q Consensus 1198 iwd~~ 1202 (2435)
.|++.
T Consensus 289 CyNl~ 293 (1081)
T KOG1538|consen 289 CYNLI 293 (1081)
T ss_pred hhhhH
Confidence 99864
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=196.43 Aligned_cols=127 Identities=24% Similarity=0.510 Sum_probs=114.4
Q ss_pred eEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEE-ecCCCcEEEEEEeecCCCcEEEEEeCCCcEEE
Q psy4869 109 VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRL-SGHKGVITDIRFMSQPGHHFVVSSAKDTFVKI 187 (2435)
Q Consensus 109 ~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~i 187 (2435)
..++|.||++.|+|++|+.+|.+|||||+|..+.|||.-..++++.+ .||...|.+++|.|..++.+++||+.|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45689999999999999999999999999999999999888887776 59999999999999999999999999999999
Q ss_pred EeccCC----------ccccccccccceEEEEEEEeCC-CeEEEeeCCCcEEEEEcCCC
Q psy4869 188 WDADTG----------DCFKTMAAHLTEVWGVCVMRED-SYLISGSNDAELKVWNVRDR 235 (2435)
Q Consensus 188 Wd~~tg----------~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~Dg~v~vwdl~~~ 235 (2435)
+|+... +..+.+..|...|..++..|++ ..+.+++.||+++-+|++..
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 999742 2345668899999999999998 56889999999999999964
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-18 Score=224.85 Aligned_cols=284 Identities=19% Similarity=0.318 Sum_probs=221.5
Q ss_pred EEeecCCCC-eEEEEEc----------CCeEEEEECCCCC------eEEEecCCCCCEEEEEEcCCCCE----EEEEeCC
Q psy4869 80 QLSPNHDSS-QLAVAYT----------NGSLKTFSLDTTD------VISTFTGHKSAITVIQYDPLGHR----LATGSKD 138 (2435)
Q Consensus 80 ~~~~~~d~~-~lav~~~----------~G~i~i~d~~~~~------~~~~l~gH~~~V~~l~f~p~g~~----laSgs~D 138 (2435)
-++|+|++. ++|+|.. +..+.||.++-.. ++..+. -...-+.|+|.+.|.. ||.|.+|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 578999986 4554433 4456677665433 333332 2356788999998755 9999999
Q ss_pred CCEEEEEccCC------eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccc--ccccceEEEEE
Q psy4869 139 TDIVLWDVVAE------CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM--AAHLTEVWGVC 210 (2435)
Q Consensus 139 g~I~iWd~~~~------~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~--~~h~~~V~~l~ 210 (2435)
|.|.+||.... ..+.++..|.+.|..|.|++ .++++|+||+.||.|.|||++.-+.-.+. ....+.|.+++
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999997652 13567789999999999986 45679999999999999999886554444 22457899999
Q ss_pred EEeC-CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEE
Q psy4869 211 VMRE-DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVF 289 (2435)
Q Consensus 211 ~~p~-~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 289 (2435)
|+.. ...|++++.+|.+.|||++..+.+-.+
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~l------------------------------------------------ 200 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKL------------------------------------------------ 200 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCccccc------------------------------------------------
Confidence 9986 456889999999999999964321000
Q ss_pred EEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEE
Q psy4869 290 RLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSK 369 (2435)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~ 369 (2435)
...+-+..+..++
T Consensus 201 -------------------------------------------------------------------s~~~~~~~~S~l~ 213 (1049)
T KOG0307|consen 201 -------------------------------------------------------------------SDTPGRMHCSVLA 213 (1049)
T ss_pred -------------------------------------------------------------------ccCCCccceeeee
Confidence 0001113467889
Q ss_pred ECCCC-CEEEEEeCCC---eEEEEecCCceeeEEEeeCCCCCeeEEEEccCC-CEEEEEeCCCeEEEEECCCCceEEEEe
Q psy4869 370 YHPDG-QYIASSGYDR---QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG-CHIFTCSTDQTLAVWDLEKGQRIKKMK 444 (2435)
Q Consensus 370 fspdg-~~Lasgs~Dg---~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~I~vwd~~tg~~v~~l~ 444 (2435)
|||++ ..|++++.|. .|.+||++........+.+|...|.++.|++.+ ++|++++.|+.|.+|+.++|+.+..+.
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 99986 4566666554 689999997777888889999999999999954 889999999999999999999999999
Q ss_pred ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC
Q psy4869 445 GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK 480 (2435)
Q Consensus 445 ~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~ 480 (2435)
....++..+.|.|..+.+++.++.||.|-||.+...
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 989999999999999999999999999999987543
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=194.68 Aligned_cols=260 Identities=19% Similarity=0.301 Sum_probs=205.8
Q ss_pred cEEEEEECCCCCE-EEEEeCCCeEEEEecCCcee---eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCce
Q psy4869 364 EIFCSKYHPDGQY-IASSGYDRQIFIWSVYGECE---NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR 439 (2435)
Q Consensus 364 ~V~~l~fspdg~~-Lasgs~Dg~I~iwd~~~~~~---~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~ 439 (2435)
.++.+.|+....+ +++-+.|..+++|.-.+... ......+ ..-.|++......++++|+..+.|+|||++....
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 3888999876642 33445778899997554311 1122222 2333444444557999999999999999997778
Q ss_pred EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCc--ccEEEEEECCCCCE-EEEEecCCeEEEE
Q psy4869 440 IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT--YQVTSVAFNDTAEC-VLTGGIDNDIKMW 516 (2435)
Q Consensus 440 v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~--~~v~sv~~sp~g~~-l~sgs~dg~V~lw 516 (2435)
.+.+++|...|.++.+...+ .+||+++..|-|.|..+.++.....+.+. ..+.-+.|+|..++ |.+++++|.|.+|
T Consensus 114 hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 88899999999999987765 67899999999999999998888777654 34668999998775 5578999999999
Q ss_pred ECCCCcEEEEE-ecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC
Q psy4869 517 DLRTNSVVQKL-RGHSDTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594 (2435)
Q Consensus 517 D~~s~~~v~~l-~~h~~~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~ 594 (2435)
|+....++..+ +.|..+..+|+|+|. ..+|++.+.|..|.+||++.. +....+.. +.+...++|+++|.
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~----~s~~~l~y-----~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ----ASTDRLTY-----SHPLSTVAFSECGT 263 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc----cccceeee-----cCCcceeeecCCce
Confidence 99998887766 689999999999995 567889999999999999842 22222221 22678899999999
Q ss_pred EEEEecCCCeEEEEECCC-CcEEEEecCCCCCeeEEEEcCCC
Q psy4869 595 YVTAGSADKCVYIWDTTT-RRIAYKLPGHNGSVNDVQFHPKE 635 (2435)
Q Consensus 595 ~Lasgs~Dg~V~iwd~~s-~~~~~~l~~h~~~V~~l~fspd~ 635 (2435)
+|++|+..|.|..||++. ..++.++.+|...|++|+|-|..
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999999999985 47899999999999999998765
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-18 Score=185.42 Aligned_cols=288 Identities=17% Similarity=0.188 Sum_probs=207.6
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee-CCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS-GHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~-~h~~~V~~l~~s~dg~~L~s~s~Dg~I~v 431 (2435)
.|..++++|.+.|+++.|..+++ |.+|...|.|++|++.+..... .+. .|...|..+.--|+ ..+.+-+.|..+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~-~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP-LIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccch-hhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 57789999999999999987765 8999999999999998764433 344 56788999988886 57889999999999
Q ss_pred EECCCCceEEEEeccCccccccCcccCC-----C---eEEEEEeCCCe-EEEEeCCCCcceEee-----cCcccEEEEEE
Q psy4869 432 WDLEKGQRIKKMKGHSTFVNSCDPVRRG-----Q---LLIASGSDDCT-VKVWDPRKKNQAVSM-----NNTYQVTSVAF 497 (2435)
Q Consensus 432 wd~~tg~~v~~l~~h~~~v~sv~~~~~~-----~---~llasgs~Dg~-I~vwD~~~~~~~~~~-----~~~~~v~sv~~ 497 (2435)
|++.-+..+ ..|+-.++++-|.+.. . .+++.-+.... +.+-|......+... ...+.+.|..+
T Consensus 82 w~ia~s~~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 82 WTIAYSAFI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEccCcceE---EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 999765443 2344445555554321 1 11111111000 112222111111111 12345666664
Q ss_pred CC-CCC--EEEEEecCCeEEEEECCCCcE----------EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC
Q psy4869 498 ND-TAE--CVLTGGIDNDIKMWDLRTNSV----------VQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV 564 (2435)
Q Consensus 498 sp-~g~--~l~sgs~dg~V~lwD~~s~~~----------v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~ 564 (2435)
.- ++. ++++|-++|.|.+||+.++.. +.....|.++|.++.|.+.-..=++|+.+..+..|.+....
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 32 333 466788899999999999743 33445799999999999877777889999999999987421
Q ss_pred CCC--ceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEE
Q psy4869 565 PGE--RCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 565 ~~~--~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs 642 (2435)
..- +....++ ..++..+.+-||++.+|++++|++||||+.++++++..++.|.+.|++++|+|+.+++|+++
T Consensus 239 gslq~~~e~~lk------npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 239 GSLQIRKEITLK------NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred CcccccceEEec------CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc
Confidence 111 1111111 12567789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecC
Q psy4869 643 SDKTIYLGES 652 (2435)
Q Consensus 643 ~Dg~I~vWd~ 652 (2435)
.|+.|-+|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 9999999986
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=224.05 Aligned_cols=279 Identities=21% Similarity=0.386 Sum_probs=223.8
Q ss_pred EEEECCCCC-EEEEEe----------CCCeEEEEecC--Cce---eeEEEeeCCCCCeeEEEEccCCCE----EEEEeCC
Q psy4869 367 CSKYHPDGQ-YIASSG----------YDRQIFIWSVY--GEC---ENIGVMSGHTGAVMDLKFSTDGCH----IFTCSTD 426 (2435)
Q Consensus 367 ~l~fspdg~-~Lasgs----------~Dg~I~iwd~~--~~~---~~~~~l~~h~~~V~~l~~s~dg~~----L~s~s~D 426 (2435)
.++|+|.+. ++|+|. .+..+-||.+. ... +.... ..-....+.|+|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s-~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGS-LQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccc-ccccccceeeeecccCCCccceeeccccC
Confidence 357888775 555553 24455566443 221 11111 123567899999987665 7788899
Q ss_pred CeEEEEECCC---C---ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee---cCcccEEEEEE
Q psy4869 427 QTLAVWDLEK---G---QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM---NNTYQVTSVAF 497 (2435)
Q Consensus 427 g~I~vwd~~t---g---~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~---~~~~~v~sv~~ 497 (2435)
|.|.+||... + ..+.....|.+.|..++|++..++++++|+.||.|.|||+.+.+..... .....|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 9999999764 2 2455667899999999999999999999999999999999986655554 35678999999
Q ss_pred CCC-CCEEEEEecCCeEEEEECCCCcEEEEEecCCC--CEEEEEEcCCC-CEEEEEECC---CcEEEEEcCCCCCCCceE
Q psy4869 498 NDT-AECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD--TVTGLSLSPDG-SYILSNAMD---NTVRIWDIRPYVPGERCV 570 (2435)
Q Consensus 498 sp~-g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~--~V~~i~~spdg-~~las~s~D---g~I~lWdl~~~~~~~~~v 570 (2435)
+.. ...|++++.+|++.|||+|..+++-.+..|.+ .+..|.|+|+. ..|++++.| -.|.+||+|. ...++
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~---assP~ 246 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF---ASSPL 246 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc---cCCch
Confidence 975 45688889999999999999999988876665 47789999985 567777765 4699999995 45677
Q ss_pred EEEeCcccccccCeEEEEEcCCC-CEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEE
Q psy4869 571 KVMSGHQHNFEKNLLRCAWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIY 648 (2435)
Q Consensus 571 ~~~~~h~~~~~~~i~~v~~spdg-~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~I~ 648 (2435)
+++.+|. .+|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+....+++..+.|+|..+ +|+.++.||.|-
T Consensus 247 k~~~~H~----~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 247 KILEGHQ----RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred hhhcccc----cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 8888886 489999999966 8999999999999999999999999999899999999999888 899999999999
Q ss_pred EecCC
Q psy4869 649 LGESP 653 (2435)
Q Consensus 649 vWd~~ 653 (2435)
|+.+.
T Consensus 323 I~sl~ 327 (1049)
T KOG0307|consen 323 IYSLQ 327 (1049)
T ss_pred eeeee
Confidence 99885
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-17 Score=181.43 Aligned_cols=280 Identities=21% Similarity=0.271 Sum_probs=210.2
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCC-----C-------eEEEEEe-cCCcCEEEEEEc-------CCCCEEEEEEC
Q psy4869 1043 VLCARVSPDSKLLAVSLLDTTVKIFFLDT-----F-------KFFISLY-GHKLPVLSLDMS-------YDSTLIATGSG 1102 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~~dg~V~i~d~~~-----~-------~~~~~l~-~h~~~V~sl~~s-------pdg~~L~Sgs~ 1102 (2435)
.....|+|||.-|++-+.|..+++|++.. . +....++ .....|...+|= |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 44679999999999999999999998741 1 1111121 123457777773 56789999999
Q ss_pred CCcEEEEEccCCceeEEEec--cCC---CEEEEEEccCCCEEEEEeCCCcEEEEeCC-CcceeEEEEEEE-eecccccCe
Q psy4869 1103 DRTVKVWGLDYGDCHKSLLA--HED---SVTGVTFVPKTHYFFTTSKDGRVKQWDAD-NFERIVTLHFFI-SLYGHKLPV 1175 (2435)
Q Consensus 1103 Dg~I~vWd~~t~~~~~~l~~--h~~---~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~-~~~~~~~~~~~~-~~~~h~~~V 1175 (2435)
+.-|++||.-+|+....+.+ |.+ ...+++|+|||.+|++|. .+.|++||+. .+.......... ...+..+-+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999987776654 444 346899999999998765 5899999994 332222221111 123446778
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEe
Q psy4869 1176 LSLDMSYD-STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLH 1253 (2435)
Q Consensus 1176 ~~l~~s~d-g~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~ 1253 (2435)
.+++|+|. ...+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|. .|..|..||+|....+
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p---- 286 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP---- 286 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch----
Confidence 99999995 45899999999999999988999999999999999999999999999998 5788888888763221
Q ss_pred eCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee
Q psy4869 1254 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL 1333 (2435)
Q Consensus 1254 ~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs 1333 (2435)
+|.|.- .++.
T Consensus 287 -----------------------v~~L~r-----------------------------------------------hv~~ 296 (406)
T KOG2919|consen 287 -----------------------VYALER-----------------------------------------------HVGD 296 (406)
T ss_pred -----------------------hhhhhh-----------------------------------------------hccC
Confidence 111110 0000
Q ss_pred cCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceEEEecccccceEEEEEeeCCCE
Q psy4869 1334 LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY-GDCHKSLLAHEDSVTGVTFVPKTHY 1412 (2435)
Q Consensus 1334 ~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~-gk~~~~~~~h~~~V~~laf~P~~~~ 1412 (2435)
.+-+ .-....|+|++|++|+.||.|++||++. |..+..+..|...|+.|+++|--.+
T Consensus 297 TNQR----------------------I~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 297 TNQR----------------------ILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPI 354 (406)
T ss_pred ccce----------------------EEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccce
Confidence 1111 1133568899999999999999999998 7777788899999999999999999
Q ss_pred EEEEeCC
Q psy4869 1413 FFTTSKD 1419 (2435)
Q Consensus 1413 laSgg~D 1419 (2435)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 9998865
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-18 Score=212.47 Aligned_cols=291 Identities=18% Similarity=0.287 Sum_probs=230.6
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEe
Q psy4869 110 ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189 (2435)
Q Consensus 110 ~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd 189 (2435)
+..+.||...|.|+.|+.+|.++++|++|..|+||.+.+..++..+.||.+.|+.++.+ .++.+++++|.|..|++|-
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs--~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS--SNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccc--hhhhhhhhcccCceEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999996 4557899999999999999
Q ss_pred ccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEE
Q psy4869 190 ADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEV 269 (2435)
Q Consensus 190 ~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 269 (2435)
+..|..+..+.+|.+.|.+++|+|.. +.+.||++++||.+-. . ....+.+...
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~-~---------------~~y~prp~~~------- 313 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE-P---------------RIYVPRPLKF------- 313 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccc-c---------------cccCCCCCCc-------
Confidence 99999999999999999999999965 7899999999998710 0 0000000000
Q ss_pred EeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCcc
Q psy4869 270 QIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTS 349 (2435)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 349 (2435)
T Consensus 314 -------------------------------------------------------------------------------- 313 (1113)
T KOG0644|consen 314 -------------------------------------------------------------------------------- 313 (1113)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCC-CEEEEEeCCCe
Q psy4869 350 NLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG-CHIFTCSTDQT 428 (2435)
Q Consensus 350 ~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~ 428 (2435)
.-.+-+-++.|...+..+++|+.|+.-+.|...- +..|...+.-+.++.|- .+.+++-.+-.
T Consensus 314 ----------~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-------l~~~~~~lif~t~ssd~~~~~~~ar~~~~ 376 (1113)
T KOG0644|consen 314 ----------TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ-------LAWRSNLLIFVTRSSDLSSIVVTARNDHR 376 (1113)
T ss_pred ----------ccccceeeeeccccccccccccCCcccccchhhH-------hhhhccceEEEeccccccccceeeeeeeE
Confidence 0002233445566677888999998888886431 12222233333333222 34556666778
Q ss_pred EEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEE
Q psy4869 429 LAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 429 I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sg 507 (2435)
+++|++.+|+..+.+.+|.+.+..+.++|-++.+..+++.||...|||+-.+.++... ..++.+...+|+++|..++..
T Consensus 377 ~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 377 LCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred eeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence 9999999999999999999999999999999999999999999999999888777665 446678888999999999999
Q ss_pred ecCCeEEEEECCCCcEEEE
Q psy4869 508 GIDNDIKMWDLRTNSVVQK 526 (2435)
Q Consensus 508 s~dg~V~lwD~~s~~~v~~ 526 (2435)
..-|.++|+....++....
T Consensus 457 d~hgql~i~g~gqs~s~k~ 475 (1113)
T KOG0644|consen 457 DDHGQLYILGTGQSKSQKK 475 (1113)
T ss_pred CCCCceEEeccCCCccccc
Confidence 9999999998776655443
|
|
| >COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-18 Score=203.38 Aligned_cols=186 Identities=18% Similarity=0.258 Sum_probs=106.3
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
.+|+.||||. .|-|+||||||.||+|| ||++++++|+.+.-..
T Consensus 98 s~~~~fd~r~-----~g~vs~v~dQg~~Gscw--------------------------------af~t~~sles~l~~~~ 140 (372)
T COG4870 98 SLPSYFDRRD-----EGKVSPVKDQGSGGSCW--------------------------------AFATTRSLESYLNPES 140 (372)
T ss_pred cchhheeeec-----cCCcccccccCcccceE--------------------------------eeeehhhhhheecccc
Confidence 4899999999 88999999999999999 9999999998776544
Q ss_pred CCCcCccCCcccee-----cccCCCCCCCCCCC-------CCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccc-cc-
Q psy4869 2253 KGQVKPILSPQHLI-----CSCTNCTRMHTKTP-------MSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGR-YI- 2318 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~-----~~~~~c~~~~~~~~-------~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~-~~- 2318 (2435)
.. .+|+-.+. |+-..|....+..+ +.-|.+|....+-+....+++..+.++|+....... .+
T Consensus 141 ~w----~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~a~l~e~sgpv~et~d~y~~~s~~~~~~~p~~k~~~~~~~i~ 216 (372)
T COG4870 141 AW----DFSENNMKNLLGVPYEKGFDYTSNDGGNADMSAAYLTEWSGPVYETDDPYSENSYFSPTNLPVTKHVQEAQIIP 216 (372)
T ss_pred cc----cccccchhhhcCCCccccCCCccccCCccccccccccccCCcchhhcCccccccccCCcCCchhhccccceecc
Confidence 21 13333332 22223332111111 122455555555555555566666666664332111 01
Q ss_pred -------cC-cccceeecccCCcccccceeeEEEEecCCCc---C-cccceEEEEEEeccCCC---------CcceEEEE
Q psy4869 2319 -------EG-IGHAASVMGSSNPEVNNFEKVIRLYSCEGSI---N-PRYIHSVKIIGWGKSSQ---------NEPYWLCT 2377 (2435)
Q Consensus 2319 -------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~Hav~iVGyg~~~~---------g~~yWiik 2377 (2435)
+. ++.+..-++.+...+. ++...+.-.|-... . ...+|||+||||+.... |.--||||
T Consensus 217 ~~~~~LdnG~i~~~~~~yg~~s~~~~-id~~~~~~~~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiik 295 (372)
T COG4870 217 SRKKYLDNGNIKAMFGFYGAVSSSMY-IDATNSLGICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIK 295 (372)
T ss_pred cchhhhcccchHHHHhhhccccceeE-EecccccccccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEE
Confidence 01 1111122222221111 11100000121111 1 34679999999996321 23379999
Q ss_pred ccCCCCcCCCceEEEEeeCcccc
Q psy4869 2378 NSYNQGWGEQGLFKIRRGVNMCS 2400 (2435)
Q Consensus 2378 NSWG~~WG~~Gy~~i~r~~n~cg 2400 (2435)
||||+.||++|||+|....-.-|
T Consensus 296 NSWGt~wG~~GYfwisY~ya~~g 318 (372)
T COG4870 296 NSWGTNWGENGYFWISYYYALNG 318 (372)
T ss_pred CccccccccCceEEEEeeecccc
Confidence 99999999999999998753333
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-18 Score=198.51 Aligned_cols=295 Identities=23% Similarity=0.325 Sum_probs=241.5
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEcc--CCCEEEEEeCCCeEEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST--DGCHIFTCSTDQTLAVWD 433 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s~Dg~I~vwd 433 (2435)
..|.+|.+.|..+.|+..|..|++|+.|..|.+||+......+....+|...|..-.|-| +.+-|++++.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 357899999999999999999999999999999999887777777789999999999988 456799999999999887
Q ss_pred CCC-Cce--EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee----cCcc---cEEEEEECCCCC-
Q psy4869 434 LEK-GQR--IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM----NNTY---QVTSVAFNDTAE- 502 (2435)
Q Consensus 434 ~~t-g~~--v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~----~~~~---~v~sv~~sp~g~- 502 (2435)
+.. +.. ...+..|...|..++.-|..++.|.+++.|+.+.-+|++...+...+ .... ..+.++.+|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 653 332 34456788999999999999999999999999999999977654443 2222 578899999766
Q ss_pred EEEEEecCCeEEEEECCCCcE------EEEEecC------CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCC-----
Q psy4869 503 CVLTGGIDNDIKMWDLRTNSV------VQKLRGH------SDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP----- 565 (2435)
Q Consensus 503 ~l~sgs~dg~V~lwD~~s~~~------v~~l~~h------~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~----- 565 (2435)
.+++|+.|..+++||.+.-.. +..+-.| .-.|+|+.|+.++.-|+++-.|-.|+++.-.....
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 799999999999999885322 3333222 23689999999988888888899999995432211
Q ss_pred ---CCceEEE-EeCcccccccCeEEEEE-cCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEE
Q psy4869 566 ---GERCVKV-MSGHQHNFEKNLLRCAW-SVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640 (2435)
Q Consensus 566 ---~~~~v~~-~~~h~~~~~~~i~~v~~-spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Las 640 (2435)
....+.. ++||.+.. .|..+.| -|...|+++||+.|.|.||+.++++++..+.|....|+||.-||.-++||+
T Consensus 376 ~s~~~~~~k~vYKGHrN~~--TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSR--TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred Ccchhhccchhhccccccc--ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 1123333 88998653 4777765 578899999999999999999999999999997779999999999999999
Q ss_pred EECCCcEEEecC
Q psy4869 641 ASSDKTIYLGES 652 (2435)
Q Consensus 641 gs~Dg~I~vWd~ 652 (2435)
+|-|.-|+||-.
T Consensus 454 SGid~DVKIWTP 465 (559)
T KOG1334|consen 454 SGIDHDVKIWTP 465 (559)
T ss_pred cCCccceeeecC
Confidence 999999999986
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=181.82 Aligned_cols=290 Identities=20% Similarity=0.277 Sum_probs=222.0
Q ss_pred ecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC-----ceeeEEEee-CCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q psy4869 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG-----ECENIGVMS-GHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-----~~~~~~~l~-~h~~~V~~l~~s~dg~~L~s~s~Dg~I~v 431 (2435)
+.+|.+.|.++.|+.++++||+|+.|..+++|++.. ..+++.... .|...|.+++|.....++++|..+++|.+
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 569999999999999999999999999999999752 123333332 35689999999999999999999999999
Q ss_pred EECCCCceEEEEecc--CccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc-c---eEeecCcccEEEEEECCCC-CEE
Q psy4869 432 WDLEKGQRIKKMKGH--STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN-Q---AVSMNNTYQVTSVAFNDTA-ECV 504 (2435)
Q Consensus 432 wd~~tg~~v~~l~~h--~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~-~---~~~~~~~~~v~sv~~sp~g-~~l 504 (2435)
.|+++.+.+..+... ...|..+..+|. .+++++.+.++.|.+||.+... . ............+.|+|-. .+|
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999999888776532 347888888888 5788899999999999998654 2 2222455667889999964 577
Q ss_pred EEEecCCeEEEEECCCCc-EEEEE---ec---CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcc
Q psy4869 505 LTGGIDNDIKMWDLRTNS-VVQKL---RG---HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQ 577 (2435)
Q Consensus 505 ~sgs~dg~V~lwD~~s~~-~v~~l---~~---h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~ 577 (2435)
++.+..+.+.+||.+... .+... .+ ....-.++.|+|+|+.|++--....-.+||+-. .+|......|.
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S----~R~~V~k~D~N 286 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS----QRCFVLKSDHN 286 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec----ccceeEeccCC
Confidence 888999999999998643 22221 11 122336789999999999877777777888863 23322222221
Q ss_pred c---ccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC-----------------------CcEEEEecCCCCCeeEEEE
Q psy4869 578 H---NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT-----------------------RRIAYKLPGHNGSVNDVQF 631 (2435)
Q Consensus 578 ~---~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s-----------------------~~~~~~l~~h~~~V~~l~f 631 (2435)
. .....+.+|+|..|. -+++|+.+-.|++|.+.. .+.+.+++||...++.|.|
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF 365 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF 365 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence 1 122356778887654 499999999999998641 1235678999999999999
Q ss_pred cCCCCEEEEEECCCcEEEecCC
Q psy4869 632 HPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 632 spd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+|...+|++.|....+++|.--
T Consensus 366 ~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 366 SQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cCCcceEeccchhhheeccccc
Confidence 9999999999999999999753
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=179.46 Aligned_cols=300 Identities=20% Similarity=0.293 Sum_probs=220.2
Q ss_pred ccCCCEEEEEEcC----C-CCEEEEEECCCcEEEEEcCCC---eEEEEEe--cCCcCEEEEEEcCC----CCEEEEEECC
Q psy4869 1038 KLEEQVLCARVSP----D-SKLLAVSLLDTTVKIFFLDTF---KFFISLY--GHKLPVLSLDMSYD----STLIATGSGD 1103 (2435)
Q Consensus 1038 ~~~~~v~~l~~sp----d-g~~Lavg~~dg~V~i~d~~~~---~~~~~l~--~h~~~V~sl~~spd----g~~L~Sgs~D 1103 (2435)
.+..+|..++|.+ + -..+|+.+ ...+.+|..... ..+..+. .|......++|+-| +.+||.|+.-
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 3456788888885 2 23455544 567899987643 2333332 47788899999764 3588999999
Q ss_pred CcEEEEEccCCceeEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeC
Q psy4869 1104 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT-HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY 1182 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~-~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 1182 (2435)
|.|+|.|+.++++...+.+|...|+.+.|.|+. +++++++.|..||+|++++..++..+. ...+|...|.++.|+.
T Consensus 115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG---G~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG---GVEGHRDEVLSVDFSL 191 (385)
T ss_pred eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec---ccccccCcEEEEEEcC
Confidence 999999999999999999999999999999954 688999999999999999998888764 6679999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCcee----------------------e------EeeccCCCEEEEEEeeCCCEEEEEEC
Q psy4869 1183 DSTLIATGSGDRTVKVWGLDYGDCH----------------------K------SLLAHEDSVTGVTFVPKTHYFFTTSK 1234 (2435)
Q Consensus 1183 dg~~l~sgs~Dg~V~iwd~~t~~~~----------------------~------~~~~h~~~V~~i~~spd~~~lvsgs~ 1234 (2435)
+|.+|++++.|..+++|++...+.. . +-.-|...|.|+.|. ++++++-+-
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 9999999999999999999832210 0 112466777777775 577888888
Q ss_pred CCcEEEEECCC-CceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccc
Q psy4869 1235 DGRVKQWDADN-FERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1313 (2435)
Q Consensus 1235 Dg~I~vwD~~~-~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1313 (2435)
++.|..|...+ .+.+..+..+.. ..-.+.-++++ ..
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es-------------~~Ti~~~~~~~------------------------------~c 306 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPES-------------ATTILGEFDYP------------------------------MC 306 (385)
T ss_pred CceEEEEecchhhhhhhccCCCcc-------------ceeeeeEeccC------------------------------cc
Confidence 88888887632 221111100000 00001111111 11
Q ss_pred cccEEEEEecCCcceeEEeecCCeEEEEEcccceEE--EEecC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q psy4869 1314 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFF--ISLYG--HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386 (2435)
Q Consensus 1314 ~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i--~~~~~--h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~ 1386 (2435)
..+....+|.|-++.||.|...|.|++||++..++. .++.. ....|++.+|+.||.+|+...+|+.|.-||..
T Consensus 307 ~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 307 DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 223445678889999999999999999999886652 22222 23569999999999999999999999999853
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-16 Score=182.55 Aligned_cols=155 Identities=24% Similarity=0.428 Sum_probs=133.4
Q ss_pred eEEEeecCCCC-eEEEEEcCCeEEEEECCCCC---------eEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEcc
Q psy4869 78 VCQLSPNHDSS-QLAVAYTNGSLKTFSLDTTD---------VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147 (2435)
Q Consensus 78 v~~~~~~~d~~-~lav~~~~G~i~i~d~~~~~---------~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~ 147 (2435)
+..+.+.+++. ++|+|++|..|+||-+...+ .+..|..|...|+++.|+|+|++||||+++|.|.||...
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 33455555554 99999999999999997543 344788999999999999999999999999999999865
Q ss_pred --------C--------CeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEE
Q psy4869 148 --------A--------ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCV 211 (2435)
Q Consensus 148 --------~--------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~ 211 (2435)
+ .....++.+|...|..++|+| ++.++++++-|..+++||+..|+.+..+.+|...|+.++|
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAW 173 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchhhhhccC--CCceeeeeeccceEEEEEeccceeEeeccccccccceeec
Confidence 2 113466789999999999985 5678999999999999999999999999999999999999
Q ss_pred EeCCCeEEEeeCCCcEEEEEcCC
Q psy4869 212 MREDSYLISGSNDAELKVWNVRD 234 (2435)
Q Consensus 212 ~p~~~~l~s~s~Dg~v~vwdl~~ 234 (2435)
.|-+.++++-+.|...+.+.+..
T Consensus 174 Dpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 174 DPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred chhhhhhhhhccCcccceeeeee
Confidence 99999999999999777776653
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=165.82 Aligned_cols=294 Identities=17% Similarity=0.237 Sum_probs=211.6
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCC---------ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYG---------ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~---------~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
.|++-+++|.+++|+.|..+|.|.++.++. +...+...++|.++|+.++|.. .+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 466678999999999999999999998752 2334556689999999999983 3677766 599999987
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
+....- .| .-++|....+.... ...-..|++|...|..+-++.++.|+.++
T Consensus 89 ~E~~es----~~------------------------~K~lwe~~~P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 89 NEEEES----LA------------------------TKRLWEVKIPMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIY 139 (325)
T ss_pred hhhhhh----cc------------------------chhhhhhcCccccC-cccCCccceeEeccCCCcEEEecCCeEEE
Confidence 542210 11 11234332222211 12234689999999888888888999999
Q ss_pred EEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc------cccCeEEEE
Q psy4869 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN------FEKNLLRCA 588 (2435)
Q Consensus 515 lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~------~~~~i~~v~ 588 (2435)
-||+++|+..+.++||++.|.++.--.....+++|+.||++||||.+ ..++++.+....+. ....|-++
T Consensus 140 ~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k----t~k~v~~ie~yk~~~~lRp~~g~wigal- 214 (325)
T KOG0649|consen 140 QVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK----TQKHVSMIEPYKNPNLLRPDWGKWIGAL- 214 (325)
T ss_pred EEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecc----ccceeEEeccccChhhcCcccCceeEEE-
Confidence 99999999999999999999999986566789999999999999998 46777777654322 11223333
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCce
Q psy4869 589 WSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKG 668 (2435)
Q Consensus 589 ~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 668 (2435)
.-+..+|++|+ ...+.+|++++.++...++ -..+|..+.|..| .+++++....+.-|.+..- ....+...+.+
T Consensus 215 -a~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv--l~a~ip~~s~~ 287 (325)
T KOG0649|consen 215 -AVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV--LQANIPVESTA 287 (325)
T ss_pred -eccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeeccE--EEEeccCCccc
Confidence 34566777775 4569999999998877763 3556777788644 6888888889999988621 11122222334
Q ss_pred eeEEEecCCCCeEEEEecCCceEEeeeeccCCC
Q psy4869 669 RVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDE 701 (2435)
Q Consensus 669 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~ 701 (2435)
.+....+...-+++..+|+.+.++++.-.++.+
T Consensus 288 c~s~s~~~~p~k~~s~ag~s~~~~i~~~~~~~~ 320 (325)
T KOG0649|consen 288 CYSASWQTSPIKFISIAGFSNKLHILKDFRFLD 320 (325)
T ss_pred eeeecccCCceEEEEecccceeeeeeecccchh
Confidence 444455666788999999999999998666544
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-15 Score=175.42 Aligned_cols=470 Identities=19% Similarity=0.209 Sum_probs=292.4
Q ss_pred CCCCceEEEEecCCCcEEEEecCCcEEEEeCCCCcee--EEEeCCCeEEEEEE-------ecCCCEEEEEeCCCeEEEEE
Q psy4869 883 GHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCL--RTIDTGSYALSVCF-------VPGDRHVLVGTKDGRLLIVD 953 (2435)
Q Consensus 883 GH~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~--~~l~~~~~v~~vaf-------spdg~~Lavg~~dg~V~vwd 953 (2435)
-|...|.|+.|+.+...+++..+..+.+|...+.... ..++.......+.. -.....+++.+.||++.|.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 4666788999998888888888888888864433222 22221111111111 11234677788999999876
Q ss_pred ccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeee
Q psy4869 954 IGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLH 1033 (2435)
Q Consensus 954 ~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1033 (2435)
+.|++...+.+|.+.+.+-.|++|+ .-|+++|.||.|++|.-.++- .
T Consensus 92 -k~~rVE~sv~AH~~A~~~gRW~~dG----------tgLlt~GEDG~iKiWSrsGML----------------------R 138 (737)
T KOG1524|consen 92 -KSARVERSISAHAAAISSGRWSPDG----------AGLLTAGEDGVIKIWSRSGML----------------------R 138 (737)
T ss_pred -ccchhhhhhhhhhhhhhhcccCCCC----------ceeeeecCCceEEEEeccchH----------------------H
Confidence 6788888999999999999999886 689999999999999864321 1
Q ss_pred ccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC
Q psy4869 1034 TRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1113 (2435)
Q Consensus 1034 ~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t 1113 (2435)
....+....|.|++|.|+.+-++.+. .+.+.|-.+.....+-.++.|.+-|.+++|++.++++++|++|-..+|||- .
T Consensus 139 Stl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~ 216 (737)
T KOG1524|consen 139 STVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-Q 216 (737)
T ss_pred HHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-c
Confidence 22345678899999999987666553 567888777777777788999999999999999999999999999999995 5
Q ss_pred CceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC
Q psy4869 1114 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1193 (2435)
Q Consensus 1114 ~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 1193 (2435)
|..+..-..|..+|++++|.|+ ..++.++. +.+|+ .....+.|..++|++||.+++.|...
T Consensus 217 G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-----------------~~p~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 217 GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-----------------SSPRVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred CcccccCChhccceeeeeeccc-cceeeeee-eeeee-----------------cCCCccceEEEEEcCCCceeeccccC
Confidence 7778888889999999999998 66666665 34441 12456789999999999999999999
Q ss_pred CcEEEEEccCCce-----------eeEee------------ccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEE
Q psy4869 1194 RTVKVWGLDYGDC-----------HKSLL------------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1250 (2435)
Q Consensus 1194 g~V~iwd~~t~~~-----------~~~~~------------~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~ 1250 (2435)
|.+.+-..-..+. .+.+. .....|....+ .-.+|+++. ...+++|.-.......
T Consensus 278 G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~sL--~Y~hLvvaT-s~qvyiys~knwntpi 354 (737)
T KOG1524|consen 278 GQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFSL--GYGHLVVAT-SLQVYIYSEKNWNTPI 354 (737)
T ss_pred ceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhCccceeeeee--ceeEEEEEe-ccEEEEEecCCccCcE
Confidence 8876543221110 00010 12234444443 222333332 3466777655544434
Q ss_pred EEeeCCcccc--cCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcce
Q psy4869 1251 TLHFNPNVYL--PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1328 (2435)
Q Consensus 1251 ~~~~~~~~~~--~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~ 1328 (2435)
.+........ ....+.+-....-.+.+|...-... .. ...+. ....++..+...+... .
T Consensus 355 iidgre~tr~lieq~ek~fli~dgsSi~lytyegR~~-~n-----p~~Pg--~~~dlL~~rtlsLand-----------t 415 (737)
T KOG1524|consen 355 IIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRLH-LN-----PRYPG--SQIDLLTWRTLSLAND-----------T 415 (737)
T ss_pred EEeccccchhHhhhhhhheEEecCcEEEEEEecCcee-cC-----CCCCC--cccccccceeeecccc-----------e
Confidence 4433322110 0011112222233344443321110 00 00000 0111222222222222 3
Q ss_pred eEE--eecCCeEEEEEc-ccceEEEE--ecCCCCCeEEEEEe----cCCCEEEEEeCCCcEEEEeCCCCceEEEeccccc
Q psy4869 1329 LAV--SLLDTTVKIFFL-DTFKFFIS--LYGHKLPVLSLDMS----YDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED 1399 (2435)
Q Consensus 1329 lav--gs~dG~V~v~d~-~~~k~i~~--~~~h~~~V~~la~s----pdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~ 1399 (2435)
|++ +.....+.+||. .+++.... +-.|+..+..++.. ++.+.++.-..++.++|=.++.--.-..+-.-..
T Consensus 416 Laird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGT 495 (737)
T KOG1524|consen 416 LAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGT 495 (737)
T ss_pred EEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhh
Confidence 333 233445778887 55554322 22456667767664 4557888888888888876654211111111223
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1400 SVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1400 ~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
-|..++|+...+.| .|=.|+++.+|=+.+
T Consensus 496 mVhtLawndttNiL-cglqDt~fsVWy~pn 524 (737)
T KOG1524|consen 496 MVHTLAWNDTTNIL-CGLQDTCFSVWYYPN 524 (737)
T ss_pred hhhhhhhcccccee-eeeccceEEEEEcCC
Confidence 58899998776655 466799999998876
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=169.79 Aligned_cols=223 Identities=21% Similarity=0.343 Sum_probs=170.6
Q ss_pred eEEEeecce---eeeeeCCCCceEEEEEeCCCCcEEEEecC--------CcEEEEEcCccccccccCCccccce-ecC-C
Q psy4869 7 YLRYVHEGS---FNIIASPNCNVVFVTLKNQEGRFLATGAS--------EDVIIWDLRLAEKALLLPGEKHEAL-LLP-G 73 (2435)
Q Consensus 7 ~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~g~~lasg~~--------g~V~IwD~~~~~~~~~~~~~~~~~~-~~~-g 73 (2435)
-|||..+++ +-+..+|.|+|.-++-.+.+.++|++.++ ....||.+...-... .....|.. .++ .
T Consensus 44 ll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE~v~~Ldte 121 (370)
T KOG1007|consen 44 LLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLECVASLDTE 121 (370)
T ss_pred EEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhhHhhcCCHH
Confidence 356666654 33456889999999998889999998622 236799986432221 11112221 112 2
Q ss_pred CccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCe-EEEe-----cCCCCCEEEEEEcC--CCCEEEEEeCCCCEEEEE
Q psy4869 74 EKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDV-ISTF-----TGHKSAITVIQYDP--LGHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 74 ~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~-~~~l-----~gH~~~V~~l~f~p--~g~~laSgs~Dg~I~iWd 145 (2435)
+...++++-|-|++..+|+- .+..|.+|+++.+.. +..+ .+|+...++-+|+| +|+.+++. .|+++..||
T Consensus 122 avg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D 199 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWD 199 (370)
T ss_pred HhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEE
Confidence 33367899999999888887 488999999998765 4433 24777889999999 77888876 589999999
Q ss_pred ccCCeeEEEE-ecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCc-cccccccccceEEEEEEEeC-CCeEEEee
Q psy4869 146 VVAECGLHRL-SGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD-CFKTMAAHLTEVWGVCVMRE-DSYLISGS 222 (2435)
Q Consensus 146 ~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~-~~~~~~~h~~~V~~l~~~p~-~~~l~s~s 222 (2435)
+++......+ .+|...|..+.|+|+. ..+|++|+.||.|+|||.+.-+ .+.++.+|...||+|.|+|. ..++++||
T Consensus 200 ~RT~~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred ccchhhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence 9988765554 6899999999998865 4589999999999999998654 58899999999999999996 55788999
Q ss_pred CCCcEEEEEcCC
Q psy4869 223 NDAELKVWNVRD 234 (2435)
Q Consensus 223 ~Dg~v~vwdl~~ 234 (2435)
.|..|.+|-...
T Consensus 279 SDs~V~Lsca~s 290 (370)
T KOG1007|consen 279 SDSAVNLSCASS 290 (370)
T ss_pred CCceeEEEeccc
Confidence 999999997654
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-16 Score=175.40 Aligned_cols=274 Identities=20% Similarity=0.301 Sum_probs=204.2
Q ss_pred CEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccc
Q psy4869 1095 TLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP--KTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK 1172 (2435)
Q Consensus 1095 ~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp--~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~ 1172 (2435)
..+|++-..|.|++||..+++.+..++++...++.++|.. ..+.+++|+.||.|++||++...+..++. ...+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~----~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS----WTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee----ccCCC
Confidence 5688889999999999999999999999999999999987 46789999999999999999888777664 22333
Q ss_pred -cCeEEEEEeCCCCEEEEEe----CCCcEEEEEccCCce-eeEe-eccCCCEEEEEEee-CCCEEEEEECCCcEEEEECC
Q psy4869 1173 -LPVLSLDMSYDSTLIATGS----GDRTVKVWGLDYGDC-HKSL-LAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDAD 1244 (2435)
Q Consensus 1173 -~~V~~l~~s~dg~~l~sgs----~Dg~V~iwd~~t~~~-~~~~-~~h~~~V~~i~~sp-d~~~lvsgs~Dg~I~vwD~~ 1244 (2435)
.+..+++.+..++.+++|. .+-.|.+||++..+. ++.+ ..|.+.|++++|+| +.+.|++|+.||-|.+||+.
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 5778888877888888886 466799999998776 5554 47999999999999 77899999999999999987
Q ss_pred CCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecC
Q psy4869 1245 NFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP 1324 (2435)
Q Consensus 1245 ~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~sp 1324 (2435)
....- |.. ....+....|.++.|..
T Consensus 197 ~d~Ee----------------------DaL---------------------------------~~viN~~sSI~~igw~~ 221 (376)
T KOG1188|consen 197 KDNEE----------------------DAL---------------------------------LHVINHGSSIHLIGWLS 221 (376)
T ss_pred CCcch----------------------hhH---------------------------------HHhhcccceeeeeeeec
Confidence 54210 000 11234567788899988
Q ss_pred Cc-ceeEEeecCCeEEEEEcccceEEEEecCCC------------CCeEEEEEecCCCEEEEEeC-CCcEEEEeCC---C
Q psy4869 1325 DS-KLLAVSLLDTTVKIFFLDTFKFFISLYGHK------------LPVLSLDMSYDSTLIATGSG-DRTVKVWGLD---Y 1387 (2435)
Q Consensus 1325 dg-~~lavgs~dG~V~v~d~~~~k~i~~~~~h~------------~~V~~la~spdg~~L~sGg~-Dg~V~iwdl~---~ 1387 (2435)
++ +.+.+-+..+..++|+++.+.....+.... .-+......-+....+.++. -+...++-+. .
T Consensus 222 ~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s 301 (376)
T KOG1188|consen 222 KKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS 301 (376)
T ss_pred CCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccc
Confidence 77 347777788889999998876544443221 01122111224445555554 5565555433 3
Q ss_pred C---ceEEEecc-cccceEEEEEeeCCCEEEEEeCCCcEEEEEC
Q psy4869 1388 G---DCHKSLLA-HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1427 (2435)
Q Consensus 1388 g---k~~~~~~~-h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~ 1427 (2435)
+ +.+..+++ |..-|.++.|...+..+.|||.||.|++|..
T Consensus 302 ~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 302 GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 3 33445555 7788999999999999999999999999995
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=170.62 Aligned_cols=296 Identities=15% Similarity=0.182 Sum_probs=217.0
Q ss_pred EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC------CceeEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEE
Q psy4869 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY------GDCHKSLLA-HEDSVTGVTFVPKTHYFFTTSKDGRVK 1149 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t------~~~~~~l~~-h~~~V~~v~fsp~~~~l~s~s~Dg~V~ 1149 (2435)
.+.+|.+.|++|.|+.++++|++|+.|..+++|+++. .+++..... |...|.+++|...+..+++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 4568999999999999999999999999999999853 345554443 668999999999889999999999999
Q ss_pred EEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc-eee--EeeccCCCEEEEEEee-C
Q psy4869 1150 QWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD-CHK--SLLAHEDSVTGVTFVP-K 1225 (2435)
Q Consensus 1150 iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~-~~~--~~~~h~~~V~~i~~sp-d 1225 (2435)
+.|+.+.+.+.... .....+.|+.+..+|..+.+++.+.++.|.+||.+... ... ...........+.|+| .
T Consensus 131 ~HDiEt~qsi~V~~----~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 131 KHDIETKQSIYVAN----ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eeecccceeeeeec----ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999987766553 22345699999999999999999999999999998755 222 2223445677888988 4
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeee
Q psy4869 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305 (2435)
Q Consensus 1226 ~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 1305 (2435)
..+|++.+..+-+-+||.|.......- +... ..
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~-------------------------~~~~----------------------~~ 239 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQ-------------------------RSMF----------------------KG 239 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHh-------------------------hhcc----------------------cc
Confidence 567778888888888888765431100 0000 00
Q ss_pred eecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceE-EEEecCCC------CCeEEEEEecCCCEEEEEeCCC
Q psy4869 1306 LHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF-FISLYGHK------LPVLSLDMSYDSTLIATGSGDR 1378 (2435)
Q Consensus 1306 ~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~-i~~~~~h~------~~V~~la~spdg~~L~sGg~Dg 1378 (2435)
+ .........+.|+|+|..|..--..-.-.+||+...++ +..+.... ..+.+++|--|. -|++|+++-
T Consensus 240 L----~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~ 314 (609)
T KOG4227|consen 240 L----PQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHW 314 (609)
T ss_pred C----cccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCccc
Confidence 0 00012345678899998887655444555677766443 33333111 125566675544 499999999
Q ss_pred cEEEEeCCC----------C-------------ceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1379 TVKVWGLDY----------G-------------DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1379 ~V~iwdl~~----------g-------------k~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
.|++|.+.. | +.+..+++|.+-++.|.|+|..++|+|.|.+..++||...
T Consensus 315 ~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 315 GIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 999998743 1 2234678999999999999999999999999999999755
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=189.57 Aligned_cols=220 Identities=24% Similarity=0.414 Sum_probs=164.8
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC---------ceeeEEEeeCCCCCeeEEEEccCCCEEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG---------ECENIGVMSGHTGAVMDLKFSTDGCHIFTC 423 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~---------~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~ 423 (2435)
.|+..+++|.++|.|+.+.+++.++++|+.||.|+.|++.. .......+.||.+.|+.++++....+|++|
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc 414 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC 414 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee
Confidence 46678899999999999999999999999999999996531 112345678999999999999998899999
Q ss_pred eCCCeEEEEECCCCceEEEEeccC--ccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec--------CcccEE
Q psy4869 424 STDQTLAVWDLEKGQRIKKMKGHS--TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN--------NTYQVT 493 (2435)
Q Consensus 424 s~Dg~I~vwd~~tg~~v~~l~~h~--~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~--------~~~~v~ 493 (2435)
+.||++++|+.....+ +.+.... ..-.++++........++...-+.--++++........+. ....++
T Consensus 415 s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 415 SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred cCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 9999999999866655 3332211 1222344333332222222222222333333333333221 224578
Q ss_pred EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEE
Q psy4869 494 SVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVM 573 (2435)
Q Consensus 494 sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~ 573 (2435)
-+.++|.+.+.+++..|+.|+++|..+++++..+..|...++++++.|+|-+|++++.|+.+++|.+. ...|+...
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld----~k~~~~es 569 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD----VKTCVLES 569 (577)
T ss_pred eEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhcc----chheeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999987 34555555
Q ss_pred eCcc
Q psy4869 574 SGHQ 577 (2435)
Q Consensus 574 ~~h~ 577 (2435)
..|.
T Consensus 570 ~~~r 573 (577)
T KOG0642|consen 570 TAHR 573 (577)
T ss_pred cccc
Confidence 5443
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=167.19 Aligned_cols=294 Identities=21% Similarity=0.260 Sum_probs=204.9
Q ss_pred ecCCCCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe--CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q psy4869 881 AQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID--TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGE 958 (2435)
Q Consensus 881 l~GH~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~--~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~ 958 (2435)
|.+|.+.|+++.|-.+++.+.....|.|++|++.+.+-+..++ ....+..+..-|+ +.|+.-+.|+.+.+|++.-+.
T Consensus 10 LRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred eccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc
Confidence 4589999999999988874433346999999999988776555 5667778887786 557777889999999998766
Q ss_pred eeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccc
Q psy4869 959 ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK 1038 (2435)
Q Consensus 959 ~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1038 (2435)
.+. .|.-.+.++.|++..+... ++.+.|-+.... +..++..+.-................
T Consensus 89 ~i~---i~Si~~nslgFCrfSl~~~---------------~k~~eqll~yp~--rgsde~h~~D~g~~tqv~i~dd~~~~ 148 (323)
T KOG0322|consen 89 FIS---IHSIVVNSLGFCRFSLVKK---------------PKNSEQLLEYPS--RGSDETHKQDGGDTTQVQIADDSERS 148 (323)
T ss_pred eEE---EeeeeccccccccceeccC---------------CCcchhheecCC--cccchhhhhccCccceeEccCchhcc
Confidence 432 2334566777766542111 111111110000 00000000000001111222233334
Q ss_pred cCCCEEEEEEcCC-CC--EEEEEECCCcEEEEEcCCC----------eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCc
Q psy4869 1039 LEEQVLCARVSPD-SK--LLAVSLLDTTVKIFFLDTF----------KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1105 (2435)
Q Consensus 1039 ~~~~v~~l~~spd-g~--~Lavg~~dg~V~i~d~~~~----------~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~ 1105 (2435)
..+.+.|..+..+ +. +|++|.++|.|.+||+..+ +.......|.++|.++.|.+.-..=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 4577888885553 32 5678888999999999876 333344579999999999876566677888889
Q ss_pred EEEEEccCC--cee--EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEe
Q psy4869 1106 VKVWGLDYG--DCH--KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMS 1181 (2435)
Q Consensus 1106 I~vWd~~t~--~~~--~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 1181 (2435)
+..|+++.. .+. ..+.-..-.|..+.+.||++.+++++||+.||+|..++...+..+. -|.+.|++++|+
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk------yHsagvn~vAfs 302 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK------YHSAGVNAVAFS 302 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh------hhhcceeEEEeC
Confidence 999998643 221 2222344578999999999999999999999999999988887764 789999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q psy4869 1182 YDSTLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1182 ~dg~~l~sgs~Dg~V~iwd~ 1201 (2435)
|+...+|.++.|+.|.+|++
T Consensus 303 pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCchhhhccCCceEEeeec
Confidence 99999999999999999986
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-15 Score=169.81 Aligned_cols=274 Identities=17% Similarity=0.262 Sum_probs=198.2
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccC-CCeEEEEEeCCCeEEEEeCCCCcceEeec----CcccE
Q psy4869 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR-GQLLIASGSDDCTVKVWDPRKKNQAVSMN----NTYQV 492 (2435)
Q Consensus 418 ~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~-~~~llasgs~Dg~I~vwD~~~~~~~~~~~----~~~~v 492 (2435)
..++++-..|.|++||..+++.+..+++|...++.+.|... +++.+.+++.||+|++||+|.......+. ...+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 46788888999999999999999999999999999999775 78899999999999999999766554442 23467
Q ss_pred EEEEECCCCCEEEEEe----cCCeEEEEECCCCcE-EEEE-ecCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCCC
Q psy4869 493 TSVAFNDTAECVLTGG----IDNDIKMWDLRTNSV-VQKL-RGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVP 565 (2435)
Q Consensus 493 ~sv~~sp~g~~l~sgs----~dg~V~lwD~~s~~~-v~~l-~~h~~~V~~i~~sp-dg~~las~s~Dg~I~lWdl~~~~~ 565 (2435)
.|++.+-.++.+++|. .+-.|.+||+|..+. ++.+ +.|.+.|++|+|+| |.++|++||.||.|.|||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7888877888999885 367899999998776 6665 67999999999999 578999999999999999985422
Q ss_pred CCceEEEEeCcccccccCeEEEEEcCCC-CEEEEecCCCeEEEEECCCCcEEEEecCCC------------CCeeEEEEc
Q psy4869 566 GERCVKVMSGHQHNFEKNLLRCAWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHN------------GSVNDVQFH 632 (2435)
Q Consensus 566 ~~~~v~~~~~h~~~~~~~i~~v~~spdg-~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~------------~~V~~l~fs 632 (2435)
....+.++ +....|..+.|..++ +.|.+-+..++..+|+++.+.....+.... ..+-..--.
T Consensus 201 eDaL~~vi-----N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~ 275 (376)
T KOG1188|consen 201 EDALLHVI-----NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP 275 (376)
T ss_pred hhhHHHhh-----cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence 22222222 233468899999877 458888999999999999887554443210 111111112
Q ss_pred CCCCEEEEEEC-CCcEEEecCCC----ccccCcceeec-CceeeEEEecCCCCeEEEEecCCceEEeeee
Q psy4869 633 PKEPIIMSASS-DKTIYLGESPL----HCDKAGSILRS-GKGRVHTMVNDKHRQILCCHGNDNVVDLFYF 696 (2435)
Q Consensus 633 pd~~~Lasgs~-Dg~I~vWd~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 696 (2435)
.++..++.++. -+...++-+.. .......++++ +...+.....+..+.++..||.|..+.+|+.
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 34445555555 34444433321 11112223333 3345666666678889999999999999995
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.6e-16 Score=181.42 Aligned_cols=314 Identities=20% Similarity=0.230 Sum_probs=239.1
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe-ccCCCEEEEEEcc--CCCEEEEEeCCCcEE
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVP--KTHYFFTTSKDGRVK 1149 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~-~h~~~V~~v~fsp--~~~~l~s~s~Dg~V~ 1149 (2435)
.+...+..|.+.|..|.|+..|..|++|+.|..|.+||+..++.+..+. +|...|....|-| +.+.+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3445677899999999999999999999999999999999998877775 6999999999998 456899999999999
Q ss_pred EEeCCCcceeEEEEEEEeecccccCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCceeeEe---eccCC---CEEEEEE
Q psy4869 1150 QWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGLDYGDCHKSL---LAHED---SVTGVTF 1222 (2435)
Q Consensus 1150 iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~iwd~~t~~~~~~~---~~h~~---~V~~i~~ 1222 (2435)
+=.+......... ..+..|.++|.-++.-|+. ..|.+++.|+.+.-+|++.+.....+ ..+.. ....|+.
T Consensus 213 ~s~i~~t~~~e~t---~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 213 VSEILETGYVENT---KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred eeeeccccceecc---eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 8887654443322 2456899999999999854 57889999999999999887643332 23333 5677777
Q ss_pred ee-CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccc
Q psy4869 1223 VP-KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHK 1301 (2435)
Q Consensus 1223 sp-d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~ 1301 (2435)
.| +...+++++.|..+++||.|....-..-. .-..++|
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-~~~~f~p---------------------------------------- 328 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-VLDKFCP---------------------------------------- 328 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccc-hhhhcCC----------------------------------------
Confidence 77 45578888888888888877543210000 0000000
Q ss_pred eeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEccc--c----------eEEEE-ecCCCCC--eEEEE-Ee
Q psy4869 1302 VLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT--F----------KFFIS-LYGHKLP--VLSLD-MS 1365 (2435)
Q Consensus 1302 ~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~--~----------k~i~~-~~~h~~~--V~~la-~s 1365 (2435)
-.... ...-.|.|++++.++.-|.+.-.|-.|++|.-.- + ..+.. |++|.+. |-.+- |-
T Consensus 329 ----~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG 403 (559)
T KOG1334|consen 329 ----HHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG 403 (559)
T ss_pred ----ccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc
Confidence 00001 2345799999999998888888899999995432 2 23334 7788755 55555 48
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEE
Q psy4869 1366 YDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1435 (2435)
Q Consensus 1366 pdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~ 1435 (2435)
|...|+++|++-|.|.||+-.++++++.+.+-..-||||.-||.-.+|||+|-|.-|+||-..+.++...
T Consensus 404 PrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~ 473 (559)
T KOG1334|consen 404 PRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATE 473 (559)
T ss_pred CccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccC
Confidence 8999999999999999999999999998888777999999999999999999999999999977555443
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-15 Score=170.24 Aligned_cols=147 Identities=22% Similarity=0.429 Sum_probs=124.2
Q ss_pred CeEEEE---EcCCeEEEEECCC-CC---eEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEEccCCe-------eE
Q psy4869 88 SQLAVA---YTNGSLKTFSLDT-TD---VISTFTGHKSAITVIQYDPL-GHRLATGSKDTDIVLWDVVAEC-------GL 152 (2435)
Q Consensus 88 ~~lav~---~~~G~i~i~d~~~-~~---~~~~l~gH~~~V~~l~f~p~-g~~laSgs~Dg~I~iWd~~~~~-------~~ 152 (2435)
+.+|+. +++|...+..+.. |. ..-.+.||+++|..++|+|. .+.|||||+|.+|+||++.... ++
T Consensus 45 kfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepv 124 (472)
T KOG0303|consen 45 KFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPV 124 (472)
T ss_pred ceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccce
Confidence 445443 3355666766653 22 23367899999999999995 5789999999999999987643 46
Q ss_pred EEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEc
Q psy4869 153 HRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232 (2435)
Q Consensus 153 ~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl 232 (2435)
..|.||...|.-|+|||. ..++|+|+|.|.+|++||+.+|+.+-++. |.+.|+.++|+.+|++|++++.|+.|||||.
T Consensus 125 v~L~gH~rrVg~V~wHPt-A~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 125 VELYGHQRRVGLVQWHPT-APNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP 202 (472)
T ss_pred EEEeecceeEEEEeeccc-chhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence 778999999999999985 45689999999999999999999988887 9999999999999999999999999999999
Q ss_pred CCCC
Q psy4869 233 RDRS 236 (2435)
Q Consensus 233 ~~~~ 236 (2435)
+++.
T Consensus 203 r~~~ 206 (472)
T KOG0303|consen 203 RRGT 206 (472)
T ss_pred CCCc
Confidence 9764
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=161.88 Aligned_cols=276 Identities=20% Similarity=0.306 Sum_probs=194.7
Q ss_pred eEecccCCcEEEEEECCCCC-EEEEEeCC-------CeEEEEecCCceee--------EEEee-CCCCCeeEEEEccCCC
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQ-YIASSGYD-------RQIFIWSVYGECEN--------IGVMS-GHTGAVMDLKFSTDGC 418 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~-~Lasgs~D-------g~I~iwd~~~~~~~--------~~~l~-~h~~~V~~l~~s~dg~ 418 (2435)
.+|..|.+.|..++-+|-.. +|+++-.+ -.+.||.+...... +..+. .+-+.|.++.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 46778999999999999654 55555332 24789987643221 22232 3557999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCce-EEEEe-----ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec--Ccc
Q psy4869 419 HIFTCSTDQTLAVWDLEKGQR-IKKMK-----GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN--NTY 490 (2435)
Q Consensus 419 ~L~s~s~Dg~I~vwd~~tg~~-v~~l~-----~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~--~~~ 490 (2435)
.+++-. |..|.+|+++.+.. +..+. +|.....+-.|+|.++.--+....|+++..||+++.++...+. |..
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq 215 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQ 215 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcc
Confidence 988876 88999999988765 33332 3455677788998544434445668999999999988887773 667
Q ss_pred cEEEEEECCCCC-EEEEEecCCeEEEEECCC-CcEEEEEecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCCCC
Q psy4869 491 QVTSVAFNDTAE-CVLTGGIDNDIKMWDLRT-NSVVQKLRGHSDTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVPGE 567 (2435)
Q Consensus 491 ~v~sv~~sp~g~-~l~sgs~dg~V~lwD~~s-~~~v~~l~~h~~~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~~~ 567 (2435)
.+..+.|+|+.+ +|++++.||.|++||.|. ..++..+.+|...|.+|.|+|. .++|++++.|..|.+|....-..
T Consensus 216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS-- 293 (370)
T KOG1007|consen 216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS-- 293 (370)
T ss_pred eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc--
Confidence 899999999866 577899999999999996 5678999999999999999995 56788999999999998763211
Q ss_pred ceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCC-EEEEEECCCc
Q psy4869 568 RCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKT 646 (2435)
Q Consensus 568 ~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~ 646 (2435)
+. +...++... + .++.+ ....++ .-....+..+..|...|.+++|+.-.+ .||+-+.||.
T Consensus 294 E~-qi~~~~des-e--------~e~~d------seer~k---pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 294 EQ-QIEFEDDES-E--------SEDED------SEERVK---PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred cc-ccccccccc-c--------Ccchh------hHHhcc---cccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 11 000011000 0 00000 000011 001123456678999999999998888 6778899999
Q ss_pred EEEecCC
Q psy4869 647 IYLGESP 653 (2435)
Q Consensus 647 I~vWd~~ 653 (2435)
+.|=.++
T Consensus 355 viIs~V~ 361 (370)
T KOG1007|consen 355 VIISSVP 361 (370)
T ss_pred EEeecCC
Confidence 9986665
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-15 Score=169.23 Aligned_cols=230 Identities=18% Similarity=0.317 Sum_probs=183.1
Q ss_pred EeeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCC-------ceEEEEeccCccccccCcccCCCeEEEEEeCCCe
Q psy4869 400 VMSGHTGAVMDLKFST-DGCHIFTCSTDQTLAVWDLEKG-------QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT 471 (2435)
Q Consensus 400 ~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg-------~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~ 471 (2435)
...+|.++|.+++|+| +...|++||.|.+|.||++..+ +++..+.+|...|..+.|+|.-.+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4678999999999999 6678999999999999998653 5678899999999999999999999999999999
Q ss_pred EEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCC-CEEEEEEcCCCCEEEEEE
Q psy4869 472 VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD-TVTGLSLSPDGSYILSNA 550 (2435)
Q Consensus 472 I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~-~V~~i~~spdg~~las~s 550 (2435)
|.+|++.+++.+..+.|..-|.++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+ .-..+-|-.+|..+-+|-
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999998888876 345566878888444432
Q ss_pred ---CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEE-ecCCCeEEEEECCCCcEE-EEecC--CC
Q psy4869 551 ---MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA-GSADKCVYIWDTTTRRIA-YKLPG--HN 623 (2435)
Q Consensus 551 ---~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Las-gs~Dg~V~iwd~~s~~~~-~~l~~--h~ 623 (2435)
.++++-|||....... -....+.. ..+|.---|.+|...|+. |-.|+.||.|.+.+..+. ..+.. ..
T Consensus 236 sr~seRq~aLwdp~nl~eP-~~~~elDt-----SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEP-IALQELDT-----SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred ccccccceeccCcccccCc-ceeEEecc-----CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 4889999998764321 22223322 236666677888877655 557999999999876642 22221 23
Q ss_pred CCeeEEEEcCCC
Q psy4869 624 GSVNDVQFHPKE 635 (2435)
Q Consensus 624 ~~V~~l~fspd~ 635 (2435)
.+-..+.|-|..
T Consensus 310 epQRG~g~mPKR 321 (472)
T KOG0303|consen 310 EPQRGMGFMPKR 321 (472)
T ss_pred Cccccccccccc
Confidence 344555665543
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=163.88 Aligned_cols=381 Identities=13% Similarity=0.108 Sum_probs=251.2
Q ss_pred EEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEE-EeCCCeEEEEEccCCceeecccccccc
Q psy4869 891 LAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLV-GTKDGRLLIVDIGAGEILEDIPAHSQE 969 (2435)
Q Consensus 891 la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lav-g~~dg~V~vwd~~sg~~v~~~~~h~~~ 969 (2435)
..|||+|+|+|+...-.+.|-|..+.+.+..+-.-..+.-+.+..|.-++++ ...++.|.+|++...+--+.+.....+
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag 93 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG 93 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence 6899999999999888999999999877654443334445677777666554 567999999999999888888888889
Q ss_pred eeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEc
Q psy4869 970 LWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1049 (2435)
Q Consensus 970 V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 1049 (2435)
+.++.|+|++ ...|.+..-|-+|.+|.+...+. .. ....+..+..++|+
T Consensus 94 ls~~~WSPdg---------rhiL~tseF~lriTVWSL~t~~~---------------~~-------~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 94 LSSISWSPDG---------RHILLTSEFDLRITVWSLNTQKG---------------YL-------LPHPKTNVKGYAFH 142 (447)
T ss_pred ceeeeECCCc---------ceEeeeecceeEEEEEEecccee---------------EE-------ecccccCceeEEEC
Confidence 9999999997 24566666799999999853210 00 11124566889999
Q ss_pred CCCCEEEEEECC---CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCC
Q psy4869 1050 PDSKLLAVSLLD---TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1126 (2435)
Q Consensus 1050 pdg~~Lavg~~d---g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~ 1126 (2435)
|||++.+....- ..+.|.....+..++.+...+...+.|.|+|||+.|++ ||.--.-.+... .-.-+
T Consensus 143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY-e~~lG 212 (447)
T KOG4497|consen 143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY-ERGLG 212 (447)
T ss_pred CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee-eeccc
Confidence 999999988753 33445555567777777777788899999999998774 543211111111 12246
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecc-------------cccCeEEEEEeCCCCEEEEEeCC
Q psy4869 1127 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYG-------------HKLPVLSLDMSYDSTLIATGSGD 1193 (2435)
Q Consensus 1127 V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~-------------h~~~V~~l~~s~dg~~l~sgs~D 1193 (2435)
+..++|+|.+++|++|+.|+.+|+.+--+-+....+-....... ......++.|-|..
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~--------- 283 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD--------- 283 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc---------
Confidence 88999999999999999999999887554333322211000000 01112233333321
Q ss_pred CcEEEEEcc--------------CCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCccc
Q psy4869 1194 RTVKVWGLD--------------YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVY 1259 (2435)
Q Consensus 1194 g~V~iwd~~--------------t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~ 1259 (2435)
-...+|... ..+....+......+.-++|++|+.++++-...
T Consensus 284 ~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~------------------------ 339 (447)
T KOG4497|consen 284 LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK------------------------ 339 (447)
T ss_pred cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCC------------------------
Confidence 112222211 011111122234467778898888877764211
Q ss_pred ccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEE
Q psy4869 1260 LPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVK 1339 (2435)
Q Consensus 1260 ~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~ 1339 (2435)
.-+.+-+||+++.+..... -.+..|+...|.|....|++.....+++
T Consensus 340 -----------~PnalW~Wdlq~l~l~avL----------------------iQk~piraf~WdP~~prL~vctg~srLY 386 (447)
T KOG4497|consen 340 -----------YPNALWLWDLQNLKLHAVL----------------------IQKHPIRAFEWDPGRPRLVVCTGKSRLY 386 (447)
T ss_pred -----------CCceEEEEechhhhhhhhh----------------------hhccceeEEEeCCCCceEEEEcCCceEE
Confidence 1233556776644432111 1256799999999999999999888999
Q ss_pred EEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy4869 1340 IFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1379 (2435)
Q Consensus 1340 v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~ 1379 (2435)
+|...-...+..-. ..-.|.++.|.-+|.+|+-.+.|..
T Consensus 387 ~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 387 FWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCce
Confidence 99876544443333 2257999999999999999888853
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-15 Score=180.13 Aligned_cols=261 Identities=20% Similarity=0.315 Sum_probs=190.7
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCc--ceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcE
Q psy4869 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF--ERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196 (2435)
Q Consensus 1119 ~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~--~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 1196 (2435)
++..|.+.|..++|+|-...|++++.|+.+.+|+++.. .....+.++.++.+|.++|.|+++..++.++++|+.||.|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 66779999999999999999999999999999999321 1122334556788999999999999999999999999999
Q ss_pred EEEEccCC----------ceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEE
Q psy4869 1197 KVWGLDYG----------DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQV 1266 (2435)
Q Consensus 1197 ~iwd~~t~----------~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~l 1266 (2435)
+.|++... .....+.+|.+.|+.+.+++....|++++.||+++.|+.....+ ..+......
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~-------- 439 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH-------- 439 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc--------
Confidence 99965421 13456779999999999999888999999999999999876555 111110000
Q ss_pred EEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCc-ceeEEeecCCeEEEEEccc
Q psy4869 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS-KLLAVSLLDTTVKIFFLDT 1345 (2435)
Q Consensus 1267 v~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg-~~lavgs~dG~V~v~d~~~ 1345 (2435)
+.-..+.+-... .+.++...-+.-.+++++.
T Consensus 440 ------------------------------------------------g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 440 ------------------------------------------------GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred ------------------------------------------------CCcceEeeccchhHhhhhhcccccccchhhhh
Confidence 000011110000 0111111112222222222
Q ss_pred ceEEEEecCC-------CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeC
Q psy4869 1346 FKFFISLYGH-------KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1418 (2435)
Q Consensus 1346 ~k~i~~~~~h-------~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~ 1418 (2435)
..-+..+... ...+..+.+.|.+.+.+++.+|+.|+++|..+++++....+|...|+++++.|+|.+|++++.
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~ 551 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH 551 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecC
Confidence 2222222211 123667778899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCceeEEEE
Q psy4869 1419 DGRVKQWDADNFERIVTL 1436 (2435)
Q Consensus 1419 Dg~V~lWd~~~~~~l~~~ 1436 (2435)
||.+++|.++.+.++...
T Consensus 552 d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 552 DGSVRLWKLDVKTCVLES 569 (577)
T ss_pred Cceeehhhccchheeecc
Confidence 999999999987776654
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=8e-16 Score=190.80 Aligned_cols=281 Identities=19% Similarity=0.335 Sum_probs=218.6
Q ss_pred EEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEE
Q psy4869 152 LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231 (2435)
Q Consensus 152 ~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwd 231 (2435)
+..|.||.+.|.|+.| +..+.++++|+.|..||||.++++.|+..+.||.+.+..++.+.++-+++++|.|..|++|.
T Consensus 183 ikrLlgH~naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHhhhhheeeeee--ccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 4557899999999999 46788999999999999999999999999999999999999998888999999999999998
Q ss_pred cCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccch
Q psy4869 232 VRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDT 311 (2435)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (2435)
+..+
T Consensus 261 l~~~---------------------------------------------------------------------------- 264 (1113)
T KOG0644|consen 261 LPDG---------------------------------------------------------------------------- 264 (1113)
T ss_pred cCCC----------------------------------------------------------------------------
Confidence 7642
Q ss_pred hhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEec
Q psy4869 312 TQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSV 391 (2435)
Q Consensus 312 ~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~ 391 (2435)
.|+.++.||.+.|++++|+|-. +.+.||++++||.
T Consensus 265 -----------------------------------------~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~ 299 (1113)
T KOG0644|consen 265 -----------------------------------------APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDA 299 (1113)
T ss_pred -----------------------------------------chHHHHhccccceeeeccCccc----cCCCCCceEeccc
Confidence 1334678999999999999944 7789999999998
Q ss_pred CCceeeE--EEe-eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeC
Q psy4869 392 YGECENI--GVM-SGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSD 468 (2435)
Q Consensus 392 ~~~~~~~--~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~ 468 (2435)
+-..... .-+ ......+-.+.|..++..+++++.|+.-..|.+..-. .+...+.-+....+-..+.+++-.
T Consensus 300 r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 300 RLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred cccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeee
Confidence 7110000 000 1123567778888888999999999998888764211 111111111111122245666677
Q ss_pred CCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCE-EEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEE
Q psy4869 469 DCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAEC-VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYI 546 (2435)
Q Consensus 469 Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~-l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~l 546 (2435)
+..+++|++-.+...+.. .+...+..+.++|-+.. ..+++.||...|||+-.|.+++.+....+.+..-+|++||..+
T Consensus 374 ~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSI 453 (1113)
T ss_pred eeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceE
Confidence 888999999998877666 57788999999996554 5588999999999999998887775445667778999999999
Q ss_pred EEEECCCcEEEEEcC
Q psy4869 547 LSNAMDNTVRIWDIR 561 (2435)
Q Consensus 547 as~s~Dg~I~lWdl~ 561 (2435)
+....-|.+.|....
T Consensus 454 ~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTG 468 (1113)
T ss_pred ecCCCCCceEEeccC
Confidence 998888999998765
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-13 Score=163.58 Aligned_cols=141 Identities=18% Similarity=0.279 Sum_probs=111.9
Q ss_pred CeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEE
Q psy4869 88 SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRF 167 (2435)
Q Consensus 88 ~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~ 167 (2435)
..+++++.||.+.|.+- .+..-.....|.+.|.|-.|+|+|.-|+|++.||.|++|.-. +-...++.....+|.|++|
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEE
Confidence 36888889999888764 344556778899999999999999999999999999999843 3333445556779999999
Q ss_pred eecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcC
Q psy4869 168 MSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVR 233 (2435)
Q Consensus 168 ~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~ 233 (2435)
.|+.+ .+|+..+.. +.|=-+.-...+-.+++|.+-|.++.|++.++.+++|+.|-..++||-.
T Consensus 154 ~p~S~-~vl~c~g~h--~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 154 APNSN-SIVFCQGGH--ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred CCCCC-ceEEecCCe--EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 87544 455555444 4444455555567789999999999999999999999999999999854
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-14 Score=180.18 Aligned_cols=276 Identities=18% Similarity=0.210 Sum_probs=206.0
Q ss_pred cEEEEeCCCC-ceeEEEeCCCeEEEEEEec-CCCEEEEEeCCCeEEEEEccCCce--eec----ccccccceeEEEEecC
Q psy4869 907 QVKIWNRPSL-SCLRTIDTGSYALSVCFVP-GDRHVLVGTKDGRLLIVDIGAGEI--LED----IPAHSQELWSVAMLPD 978 (2435)
Q Consensus 907 ~V~Iwd~~~~-~~~~~l~~~~~v~~vafsp-dg~~Lavg~~dg~V~vwd~~sg~~--v~~----~~~h~~~V~sv~~s~d 978 (2435)
.+.||+++.- .....+.....+.|+.|+| +..+||+|..+|.|.+||+..+.. ... ...|..+|+.+.|..+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 6999999976 5568888999999999999 566777888999999999998775 333 2568889999999886
Q ss_pred CCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCC-CCEEEE
Q psy4869 979 QFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD-SKLLAV 1057 (2435)
Q Consensus 979 ~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd-g~~Lav 1057 (2435)
. ...-|++++.||.|+.|+++....+-+... .... ...........++++++|.+. -..+++
T Consensus 303 ~--------~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~------~~~~---~~~~~~~~~~~~~t~~~F~~~~p~~FiV 365 (555)
T KOG1587|consen 303 E--------HNTEFFSLSSDGSICSWDTDMLSLPVEGLL------LESK---KHKGQQSSKAVGATSLKFEPTDPNHFIV 365 (555)
T ss_pred C--------CCCceEEEecCCcEeeeeccccccchhhcc------cccc---cccccccccccceeeEeeccCCCceEEE
Confidence 4 124689999999999998875443211000 0000 001112334568999999995 467889
Q ss_pred EECCCcEEEEEcCCC--------eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEcc-CCceeEEEeccCCCEE
Q psy4869 1058 SLLDTTVKIFFLDTF--------KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD-YGDCHKSLLAHEDSVT 1128 (2435)
Q Consensus 1058 g~~dg~V~i~d~~~~--------~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~-t~~~~~~l~~h~~~V~ 1128 (2435)
|+..|.|..-...+. +.+..+..|.++|+++.++|-+..++..+.|.+|+||... ...++..+..+.+.|.
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~ 445 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVT 445 (555)
T ss_pred EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceee
Confidence 998898887444322 2233456789999999999977555544559999999987 6677778888888999
Q ss_pred EEEEccC-CCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC
Q psy4869 1129 GVTFVPK-THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1203 (2435)
Q Consensus 1129 ~v~fsp~-~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t 1203 (2435)
+++|+|- ...|+++..||.|.+||+.......... ...+....+.+.|+++|+.|++|+..|.+++|++..
T Consensus 446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s----~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS----QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeEEcCcCceEEEEEcCCCceehhhhhccccCCccc----ccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999994 4578888899999999997654433322 223356677788888899999999999999999963
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=173.88 Aligned_cols=273 Identities=12% Similarity=0.179 Sum_probs=185.7
Q ss_pred EEEeCCCeEEEEecCCc--eeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECC-CCce--EEEEeccCcccc
Q psy4869 378 ASSGYDRQIFIWSVYGE--CENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLE-KGQR--IKKMKGHSTFVN 451 (2435)
Q Consensus 378 asgs~Dg~I~iwd~~~~--~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~-tg~~--v~~l~~h~~~v~ 451 (2435)
++...++.|++||+... ...+..+. +.+....++++|++++|++++ .++.|.+|+++ +++. +.... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 34467899999999632 22333333 446678899999999988765 47889999996 3432 22222 222355
Q ss_pred ccCcccCCCeEEEEEeCCCeEEEEeCCCCc----ceEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEE
Q psy4869 452 SCDPVRRGQLLIASGSDDCTVKVWDPRKKN----QAVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRTNSVVQK 526 (2435)
Q Consensus 452 sv~~~~~~~~llasgs~Dg~I~vwD~~~~~----~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s~~~v~~ 526 (2435)
.+.+.|+++.++++...++.|.+||+.... .+..........+++++|+|+++++++ .++.|.+||+.+...+..
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 788899998888887779999999987432 222223334567889999999987665 469999999986432211
Q ss_pred -----Ee-cCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCCCCCceEEEEeCccc--ccccCeEEEEEcCCCCEEE
Q psy4869 527 -----LR-GHSDTVTGLSLSPDGSYILSNAM-DNTVRIWDIRPYVPGERCVKVMSGHQH--NFEKNLLRCAWSVSGLYVT 597 (2435)
Q Consensus 527 -----l~-~h~~~V~~i~~spdg~~las~s~-Dg~I~lWdl~~~~~~~~~v~~~~~h~~--~~~~~i~~v~~spdg~~La 597 (2435)
.. ........+.|+|||++++++.. +++|.+||+.......+.+..+..... ........+.++|+|++|+
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 11 11234678999999999988876 999999999742111233444332211 1112334688999999999
Q ss_pred Eec-CCCeEEEEECCCCc----EEEEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEecCC
Q psy4869 598 AGS-ADKCVYIWDTTTRR----IAYKLPGHNGSVNDVQFHPKEPIIMSASS-DKTIYLGESP 653 (2435)
Q Consensus 598 sgs-~Dg~V~iwd~~s~~----~~~~l~~h~~~V~~l~fspd~~~Lasgs~-Dg~I~vWd~~ 653 (2435)
++. .++.|.+|++.... .+..+.. ......+.|+|++++|++++. +++|.+|+++
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 985 47899999986432 2232222 135668999999999988775 8999999886
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-13 Score=167.45 Aligned_cols=479 Identities=17% Similarity=0.168 Sum_probs=279.0
Q ss_pred ceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCC------------CEEEEEeCCCCEEEE
Q psy4869 77 EVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG------------HRLATGSKDTDIVLW 144 (2435)
Q Consensus 77 ~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g------------~~laSgs~Dg~I~iW 144 (2435)
.-+++.|++.| .+|.| ....|.+.|..+.+.++.+.-|+..|+.+.|.|-. -+||++.-.|.|.||
T Consensus 17 N~~A~Dw~~~G-LiAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35678999888 66666 34568899999999999999999999999998832 368889999999999
Q ss_pred EccCCeeEEEEecCCCcEEEEEEeecC--CCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEe-CCCeEEEe
Q psy4869 145 DVVAECGLHRLSGHKGVITDIRFMSQP--GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMR-EDSYLISG 221 (2435)
Q Consensus 145 d~~~~~~~~~l~gH~~~V~~v~~~~~~--~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p-~~~~l~s~ 221 (2435)
|+.....+..+..|..+|.++.|.+.. ...+|+.-..-.+|.+|+..+|+.+.....-.....++.+.| +.+.+..-
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 999888888889999999999998753 335777778888999999999998877765556667788888 45566666
Q ss_pred eCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccc
Q psy4869 222 SNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLN 301 (2435)
Q Consensus 222 s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (2435)
+..|.|.+-+.-.-+. ++.....+ +...+...+......-. .....++...+
T Consensus 175 ~s~g~vl~~~~l~~se----------------------p~~pgk~~--qI~sd~Sdl~~lere~a----t~ns~ts~~~s 226 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSE----------------------PDVPGKEF--QITSDHSDLAHLERETA----TGNSTTSTPAS 226 (1062)
T ss_pred ccCceEEEEeccCCCC----------------------CCCCceeE--EEecCccchhhhhhhhh----ccccccCCCcc
Confidence 7777777665432211 11111000 00000000000000000 00000000000
Q ss_pred c--CccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCC--EE
Q psy4869 302 I--DDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ--YI 377 (2435)
Q Consensus 302 ~--~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~--~L 377 (2435)
. -.+...+.-....+.........++-++|.+-+.. ..+..-..+.+.-+.+-|+++ .|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~-----------------l~vvpier~~akfv~vlP~~~rd~L 289 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECC-----------------LAVVPIERGGAKFVDVLPDPRRDAL 289 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhce-----------------eEEEEeccCCcceeEeccCCCcceE
Confidence 0 00000000011111222233344555555543322 222223345566677888764 68
Q ss_pred EEEeCCCeEEEEecCCceeeEEE----ee-CCCCCeeEE-----------EEccC-CCEEEEEeCCCeEEEEECCCCceE
Q psy4869 378 ASSGYDRQIFIWSVYGECENIGV----MS-GHTGAVMDL-----------KFSTD-GCHIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 378 asgs~Dg~I~iwd~~~~~~~~~~----l~-~h~~~V~~l-----------~~s~d-g~~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
+..-.+|.+.+|--+........ +. .-...+..+ ...|. ...++..-.+|.+.+|.+.+|+..
T Consensus 290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 89999999999964421111100 00 001122222 22332 223333445778889998876532
Q ss_pred EEEec-cCccccccCcccC----CCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCC-------CEEEEEe
Q psy4869 441 KKMKG-HSTFVNSCDPVRR----GQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTA-------ECVLTGG 508 (2435)
Q Consensus 441 ~~l~~-h~~~v~sv~~~~~----~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g-------~~l~sgs 508 (2435)
..... -..-+..+.|... +...+..-++|| ....|.............-+.-.|.| .++|+|.
T Consensus 370 ~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg-----~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT 444 (1062)
T KOG1912|consen 370 LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDG-----SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGT 444 (1062)
T ss_pred cccccccccccccccccCceeehhhccccchhhcC-----CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeec
Confidence 22111 1111222222211 122234444554 11111111111111111112222222 3688999
Q ss_pred cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEE---------EECCCcEEEEEcCCCCCCCceEEEEeCcccc
Q psy4869 509 IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILS---------NAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579 (2435)
Q Consensus 509 ~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las---------~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~ 579 (2435)
..|+|.++|+.++.....+..|...|.++.|--+..++-. ++.-+.+.+-|++++ .-+.+++.+.+
T Consensus 445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG-----lsk~fR~l~~~ 519 (1062)
T KOG1912|consen 445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG-----LSKRFRGLQKP 519 (1062)
T ss_pred CCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccc-----cccccccCCCC
Confidence 9999999999999999999999999999999865544322 222345677788853 22345555556
Q ss_pred cccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 580 FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 580 ~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
.+.+|..+..|..|+||+..-.|.-+.+||+++
T Consensus 520 despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 520 DESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred CcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 667899999999999999999999999999864
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=181.37 Aligned_cols=289 Identities=20% Similarity=0.312 Sum_probs=209.2
Q ss_pred ecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeC---CCCCeeEEEEcc--CCCEEEEEeCCCeEEEE
Q psy4869 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSG---HTGAVMDLKFST--DGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~---h~~~V~~l~~s~--dg~~L~s~s~Dg~I~vw 432 (2435)
..+..++-..+.|+|-...+++++..-+|+|||.+.+.. +..+.. ....|.++.+-. |...+++|+.||.||||
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCce-eccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 344555667789999999999998888999999876532 223322 346788998875 55689999999999999
Q ss_pred ECCC-----CceEEEEe---cc----CccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecC--cccEEEEEEC
Q psy4869 433 DLEK-----GQRIKKMK---GH----STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN--TYQVTSVAFN 498 (2435)
Q Consensus 433 d~~t-----g~~v~~l~---~h----~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~--~~~v~sv~~s 498 (2435)
+--. .+.+..+. ++ .+.-.-++|....+.++++| +-..|+|||.........+.. ...++++.-+
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD 1217 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeeccc
Confidence 7422 22333222 11 11112356777766666555 478999999998888777743 3446665443
Q ss_pred -CCCCEEEEEecCCeEEEEECCCCc---EEEEEecCCCC--EEEEEEcCCCCE-EEEEECCCcEEEEEcCCCCCCCceEE
Q psy4869 499 -DTAECVLTGGIDNDIKMWDLRTNS---VVQKLRGHSDT--VTGLSLSPDGSY-ILSNAMDNTVRIWDIRPYVPGERCVK 571 (2435)
Q Consensus 499 -p~g~~l~sgs~dg~V~lwD~~s~~---~v~~l~~h~~~--V~~i~~spdg~~-las~s~Dg~I~lWdl~~~~~~~~~v~ 571 (2435)
..|+.+++|..||.|++||.|... .+...+.|.+. |..+.+.+.|-. |++|+.||.|++||+|.. .......
T Consensus 1218 ~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~ 1296 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLT 1296 (1387)
T ss_pred ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccce
Confidence 357999999999999999998643 57778899987 999999997765 999999999999999963 1122111
Q ss_pred EEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC-------CCCCeeEEEEcCCCCEEEEEECC
Q psy4869 572 VMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG-------HNGSVNDVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 572 ~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~-------h~~~V~~l~fspd~~~Lasgs~D 644 (2435)
...|. ......+++..++....+|+|+. +.|+||++.- +.+..++. ..+.+.|++|||...+||+|+.|
T Consensus 1297 -iv~~~-~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1297 -IVAHW-EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred -eeecc-ccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence 11221 11124788999999999999999 9999999853 33333222 33668999999999999999999
Q ss_pred CcEEEecCC
Q psy4869 645 KTIYLGESP 653 (2435)
Q Consensus 645 g~I~vWd~~ 653 (2435)
.+|.+|..+
T Consensus 1373 s~V~iYs~~ 1381 (1387)
T KOG1517|consen 1373 STVSIYSCE 1381 (1387)
T ss_pred ceEEEeecC
Confidence 999999865
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-13 Score=148.01 Aligned_cols=276 Identities=13% Similarity=0.195 Sum_probs=193.4
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccC---------Cc-eeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCC
Q psy4869 930 SVCFVPGDRHVLVGTKDGRLLIVDIGA---------GE-ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDK 999 (2435)
Q Consensus 930 ~vafspdg~~Lavg~~dg~V~vwd~~s---------g~-~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg 999 (2435)
+-+++|.+++|++|..+|.|.++.+++ |+ .+...++|..+|+.++|..+ +|++| .||
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~------------~Lls~-gdG 81 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD------------FLLSG-GDG 81 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh------------heeec-cCc
Confidence 457789999999999999999998763 22 45556899999999999954 56665 559
Q ss_pred eEEEEEcccccccccccccccccccccceeeeeeccc--cccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE
Q psy4869 1000 SVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT--LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS 1077 (2435)
Q Consensus 1000 ~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~ 1077 (2435)
.|+-|......... .. .+.+....+.. .-.-..|+++.+.|..+-++.++.|+.++.||+++++..+.
T Consensus 82 ~V~gw~W~E~~es~----~~------K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 82 LVYGWEWNEEEESL----AT------KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred eEEEeeehhhhhhc----cc------hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 99999875322110 00 11111111111 11134689999998766666666799999999999999999
Q ss_pred EecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEecc----------CCCEEEEEEccCCCEEEEEeCCCc
Q psy4869 1078 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH----------EDSVTGVTFVPKTHYFFTTSKDGR 1147 (2435)
Q Consensus 1078 l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h----------~~~V~~v~fsp~~~~l~s~s~Dg~ 1147 (2435)
++||+.-|.++.--..+..+++|++||++++||.++++++..+... ...|.+++- +..++++|+ ...
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~ 228 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPK 228 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCc
Confidence 9999999999998556677999999999999999999999887532 123455554 456666655 478
Q ss_pred EEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCC-
Q psy4869 1148 VKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT- 1226 (2435)
Q Consensus 1148 V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~- 1226 (2435)
+.+|.++..+....+. -.+++..+.|. .+.+++++..+.|.-|.+. |.....+........+..|.-..
T Consensus 229 lslwhLrsse~t~vfp-------ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFP-------IPARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPI 298 (325)
T ss_pred eeEEeccCCCceEEEe-------cccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCce
Confidence 9999999988777664 45678888886 4578888888889999886 55444444334445555554333
Q ss_pred CEEEEEECCCcEEEE
Q psy4869 1227 HYFFTTSKDGRVKQW 1241 (2435)
Q Consensus 1227 ~~lvsgs~Dg~I~vw 1241 (2435)
++|-.++...++.++
T Consensus 299 k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 299 KFISIAGFSNKLHIL 313 (325)
T ss_pred EEEEecccceeeeee
Confidence 233344455555554
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-14 Score=167.24 Aligned_cols=236 Identities=17% Similarity=0.307 Sum_probs=168.7
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEcc--CCCEEEEEeCCCeEEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST--DGCHIFTCSTDQTLAVWD 433 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s~Dg~I~vwd 433 (2435)
..|.||.+.|+|+.|+.+|.+|++|+.|-++.|||..........-.+|...|.++.|-| +.+.+++|+.|..|++||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 458899999999999999999999999999999998754444455578999999999998 567889999999999999
Q ss_pred CCC----------CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe-------e----cCcccE
Q psy4869 434 LEK----------GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS-------M----NNTYQV 492 (2435)
Q Consensus 434 ~~t----------g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~-------~----~~~~~v 492 (2435)
+.. ......+..|...|..++..|.+++.+.+++.||+|+-+|++....... + ...-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 974 2344555678889999999999999999999999999999986321111 1 122357
Q ss_pred EEEEECCCC-CEEEEEecCCeEEEEECCCCcE-EEEEecC----CCCEEEEE-EcCCCCEEEEEECCCcEEEEEcCCCCC
Q psy4869 493 TSVAFNDTA-ECVLTGGIDNDIKMWDLRTNSV-VQKLRGH----SDTVTGLS-LSPDGSYILSNAMDNTVRIWDIRPYVP 565 (2435)
Q Consensus 493 ~sv~~sp~g-~~l~sgs~dg~V~lwD~~s~~~-v~~l~~h----~~~V~~i~-~spdg~~las~s~Dg~I~lWdl~~~~~ 565 (2435)
.|+.++|.. .+|++|+.|-..++||.+...+ ...-..| .....|+. |+|++- ...+|.+
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~---------- 269 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNL---------- 269 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cCccccc----------
Confidence 789999864 5789999999999999653211 1100001 11111221 222211 0000000
Q ss_pred CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEE
Q psy4869 566 GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAY 617 (2435)
Q Consensus 566 ~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~ 617 (2435)
......++.+.|+|+|.-|+..-....|+++|+..++...
T Consensus 270 ------------~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 270 ------------DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred ------------ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 0000135678999999888877777789999998876544
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=177.19 Aligned_cols=277 Identities=14% Similarity=0.222 Sum_probs=200.9
Q ss_pred CCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc--ccc----cccccceEEEEEE
Q psy4869 138 DTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC--FKT----MAAHLTEVWGVCV 211 (2435)
Q Consensus 138 Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~--~~~----~~~h~~~V~~l~~ 211 (2435)
++.+.|||+...........-...|+|+.|+|. +..+|+.|..+|+|.+||++.+.. ... ...|..+|..+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 357999999877322222334568999999985 456899999999999999998876 322 2578999999999
Q ss_pred EeCC--CeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEE
Q psy4869 212 MRED--SYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVF 289 (2435)
Q Consensus 212 ~p~~--~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 289 (2435)
..+. ..|++++.||.|+.|+++.-.. +.+...+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~-----------P~e~~~~~~~------------------------------- 337 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSL-----------PVEGLLLESK------------------------------- 337 (555)
T ss_pred eccCCCCceEEEecCCcEeeeecccccc-----------chhhcccccc-------------------------------
Confidence 7754 4499999999999998763210 0000000000
Q ss_pred EEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEE
Q psy4869 290 RLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSK 369 (2435)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~ 369 (2435)
. ... + .. .-...+++++
T Consensus 338 -----------------------~-----------------~~~-----~-----------------~~-~~~~~~t~~~ 354 (555)
T KOG1587|consen 338 -----------------------K-----------------HKG-----Q-----------------QS-SKAVGATSLK 354 (555)
T ss_pred -----------------------c-----------------ccc-----c-----------------cc-ccccceeeEe
Confidence 0 000 0 00 1123578889
Q ss_pred ECCC-CCEEEEEeCCCeEEEEecCC---ce----eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC-CCceE
Q psy4869 370 YHPD-GQYIASSGYDRQIFIWSVYG---EC----ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE-KGQRI 440 (2435)
Q Consensus 370 fspd-g~~Lasgs~Dg~I~iwd~~~---~~----~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~-tg~~v 440 (2435)
|.+. ...++.|+.+|.|..-+-.+ .. +....+..|.++|+.+.++|=+..++..+.|..++||.-. ...++
T Consensus 355 F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl 434 (555)
T KOG1587|consen 355 FEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL 434 (555)
T ss_pred eccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc
Confidence 9884 56799999999987743322 22 1233456789999999999966655555559999999987 67788
Q ss_pred EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc--ceEeec-CcccEEEEEECCCCCEEEEEecCCeEEEEE
Q psy4869 441 KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN--QAVSMN-NTYQVTSVAFNDTAECVLTGGIDNDIKMWD 517 (2435)
Q Consensus 441 ~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~--~~~~~~-~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD 517 (2435)
..+..+.+.+.+++|+|.++.+|+++..||.|.+||+.... ++.... .....+.+.|++.|+.|++|+..|.+++|+
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 88888889999999999999999999999999999987543 333332 244567788889999999999999999999
Q ss_pred CCC
Q psy4869 518 LRT 520 (2435)
Q Consensus 518 ~~s 520 (2435)
+..
T Consensus 515 l~~ 517 (555)
T KOG1587|consen 515 LSE 517 (555)
T ss_pred cCc
Confidence 863
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-12 Score=149.69 Aligned_cols=278 Identities=15% Similarity=0.181 Sum_probs=199.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC--CeEEEEECCCCce
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD--QTLAVWDLEKGQR 439 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D--g~I~vwd~~tg~~ 439 (2435)
...+..+.|+.+...|..|+.|| .++|......+ ..........|-.+-|+ ..+++.++.+ +.+++.+...+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 34566667999999999999988 46776654322 11112223345555565 4467766655 3599999998888
Q ss_pred EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec----CcccEEEEEECCCCCEEEEEe--cCCeE
Q psy4869 440 IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN----NTYQVTSVAFNDTAECVLTGG--IDNDI 513 (2435)
Q Consensus 440 v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~----~~~~v~sv~~sp~g~~l~sgs--~dg~V 513 (2435)
++.+.-. ..|.++.+..+ +++ .+-. ..|.|||++..+.+..+. +...+..+++++.+.+++.-+ ..|.|
T Consensus 81 ICe~~fp-t~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIFFP-TSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEecC-CceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 8887643 34666665443 344 3433 349999999999888773 444566777777777888643 46999
Q ss_pred EEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCc-EEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCC
Q psy4869 514 KMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNT-VRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592 (2435)
Q Consensus 514 ~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~-I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spd 592 (2435)
.|||..+-+.+..+..|++.+.+++|+++|.+||++|..|+ ||||.+. .++.+..|+.... ...|.+++|+||
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~----~G~kl~eFRRG~~--~~~IySL~Fs~d 229 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP----EGQKLYEFRRGTY--PVSIYSLSFSPD 229 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC----CccEeeeeeCCce--eeEEEEEEECCC
Confidence 99999999999999999999999999999999999999887 5899986 4566776663322 347899999999
Q ss_pred CCEEEEecCCCeEEEEECCCCcE-------------------------------------EEEecCCC---CCeeEEEEc
Q psy4869 593 GLYVTAGSADKCVYIWDTTTRRI-------------------------------------AYKLPGHN---GSVNDVQFH 632 (2435)
Q Consensus 593 g~~Lasgs~Dg~V~iwd~~s~~~-------------------------------------~~~l~~h~---~~V~~l~fs 632 (2435)
+++|++.|..++|+||.++.-.. ........ ..+..+.-.
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~ 309 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSI 309 (391)
T ss_pred CCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeecc
Confidence 99999999999999998652100 00000011 123333334
Q ss_pred CCCCEEEEEECCCcEEEecCCC
Q psy4869 633 PKEPIIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 633 pd~~~Lasgs~Dg~I~vWd~~~ 654 (2435)
++.+++..++.||.++.+.++.
T Consensus 310 ~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 310 QKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred CCCCEEEEEEcCCeEEEEEcCC
Confidence 5778999999999999999984
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-13 Score=172.99 Aligned_cols=299 Identities=16% Similarity=0.231 Sum_probs=212.8
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccc---cceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEE
Q psy4869 928 ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHS---QELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLW 1004 (2435)
Q Consensus 928 v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~---~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW 1004 (2435)
...+.|+|-...++++.+.-.|.|||++.++....|..+. ..|..+.+-.+. ....+++|+.||.||+|
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~--------D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQ--------DDALLLTASSDGVIRIW 1138 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeeccc--------chhheeeeccCceEEEe
Confidence 4567888888888898888999999999999998887654 468888887653 23589999999999999
Q ss_pred EcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEe-cCCc
Q psy4869 1005 QLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY-GHKL 1083 (2435)
Q Consensus 1005 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~-~h~~ 1083 (2435)
+--...+ ...++... ...+........+.-.-+.|-....+|++++.-..|+|||.+..+....+. +-..
T Consensus 1139 k~y~~~~------~~~eLVTa---w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1139 KDYADKW------KKPELVTA---WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred ccccccc------CCceeEEe---eccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence 7321110 00111000 001111111111222446777776777777767899999999888777765 3445
Q ss_pred CEEEEEEcC-CCCEEEEEECCCcEEEEEccCC---ceeEEEeccCCC--EEEEEEccCCC-EEEEEeCCCcEEEEeCCCc
Q psy4869 1084 PVLSLDMSY-DSTLIATGSGDRTVKVWGLDYG---DCHKSLLAHEDS--VTGVTFVPKTH-YFFTTSKDGRVKQWDADNF 1156 (2435)
Q Consensus 1084 ~V~sl~~sp-dg~~L~Sgs~Dg~I~vWd~~t~---~~~~~l~~h~~~--V~~v~fsp~~~-~l~s~s~Dg~V~iwD~~~~ 1156 (2435)
.|+++.-+. .|+.+++|..||.|++||.+.. ..+...+.|.+. |..+.+.++|- .|++|+.||.|++||++..
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 577776543 4699999999999999998643 356667788887 99999998765 5999999999999999985
Q ss_pred ceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeec-------cCCCEEEEEEeeCCCEE
Q psy4869 1157 ERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA-------HEDSVTGVTFVPKTHYF 1229 (2435)
Q Consensus 1157 ~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~-------h~~~V~~i~~spd~~~l 1229 (2435)
.....+. +.......+.++++..+++...+|+|+. +.|+||++. |+.+..++. ..+.+.|++|+|..-++
T Consensus 1290 ~~e~~~~-iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1290 SKETFLT-IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred cccccce-eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhh
Confidence 2222221 1111111235999999999999999998 999999997 444444432 23478999999998889
Q ss_pred EEEECCCcEEEEECCCC
Q psy4869 1230 FTTSKDGRVKQWDADNF 1246 (2435)
Q Consensus 1230 vsgs~Dg~I~vwD~~~~ 1246 (2435)
++|+.|..|.+|.....
T Consensus 1367 AaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhccCCceEEEeecCCc
Confidence 99999999999976543
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-13 Score=149.68 Aligned_cols=250 Identities=18% Similarity=0.249 Sum_probs=168.1
Q ss_pred CcEEEEEECC---CCCEEEEEeC----CCeEEEEecCCceeeEEEe--eCCCCCeeEEEEccCCC-----EEEEEeCCCe
Q psy4869 363 GEIFCSKYHP---DGQYIASSGY----DRQIFIWSVYGECENIGVM--SGHTGAVMDLKFSTDGC-----HIFTCSTDQT 428 (2435)
Q Consensus 363 ~~V~~l~fsp---dg~~Lasgs~----Dg~I~iwd~~~~~~~~~~l--~~h~~~V~~l~~s~dg~-----~L~s~s~Dg~ 428 (2435)
-.++++.|+. ...+||.|+. .++|.|-.+.......... ..|..+++.+.|.|+.. +|+++ +..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence 3567788873 3568999873 4567776554322222222 36889999999999753 34443 448
Q ss_pred EEEEECCCCceEE----EE-----eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECC
Q psy4869 429 LAVWDLEKGQRIK----KM-----KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFND 499 (2435)
Q Consensus 429 I~vwd~~tg~~v~----~l-----~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp 499 (2435)
+|+|.+...+... .+ ..+..++++.+|..-.++++.+.+-|-+..|||+.++.
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~------------------ 184 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV------------------ 184 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc------------------
Confidence 9999986321111 11 12334455555555555555555555555555543320
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccc
Q psy4869 500 TAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDG-SYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH 578 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg-~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~ 578 (2435)
.+.....+-.|...|..|+|..++ ..+|+.+.||.+|+||+|..+. ....+....
T Consensus 185 --------------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~p~- 240 (364)
T KOG0290|consen 185 --------------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---STIIYEDPS- 240 (364)
T ss_pred --------------------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---ceEEecCCC-
Confidence 112345667899999999999865 4788999999999999996432 112222221
Q ss_pred ccccCeEEEEEcCCC-CEEEEecCC-CeEEEEECCCC-cEEEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEecCCC
Q psy4869 579 NFEKNLLRCAWSVSG-LYVTAGSAD-KCVYIWDTTTR-RIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 579 ~~~~~i~~v~~spdg-~~Lasgs~D-g~V~iwd~~s~-~~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~I~vWd~~~ 654 (2435)
...+..+++|++.. +|+|+-..| ..|.|.|++.. .++..+.+|.+.|++++|.|... .|+++|+|..+.+||+..
T Consensus 241 -~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 241 -PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred -CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 13478899999854 678876655 57999999965 78999999999999999999755 999999999999999985
Q ss_pred ccc
Q psy4869 655 HCD 657 (2435)
Q Consensus 655 ~~~ 657 (2435)
...
T Consensus 320 ~~~ 322 (364)
T KOG0290|consen 320 MPR 322 (364)
T ss_pred ccc
Confidence 444
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-10 Score=145.47 Aligned_cols=279 Identities=15% Similarity=0.250 Sum_probs=189.4
Q ss_pred CCceEEEEEeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEE
Q psy4869 23 NCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTF 102 (2435)
Q Consensus 23 ~~~v~~~~~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~ 102 (2435)
-+.+.++++.+ .||++|+...|++||+..+++....... ..+..|.. .....- .+.+++.+..-+.+..-
T Consensus 7 ~~~l~~~~~~~---~~llag~gp~i~~yd~~s~~li~~~~~~----~~~~~H~~--e~~~~l-~~~~~v~~~~~~~v~~~ 76 (967)
T KOG0974|consen 7 LGPLNLPQLVS---DYLLAGSGPEILVYDLSSGCLIRHLIQS----KILEVHRG--EGKVKL-LSGKIVTCAKSDEVYVK 76 (967)
T ss_pred cccccchhhcc---ceeeecCCCceEEeeCCchhHhhhhhhh----cccccccc--ccccee-ccceEEEEEeecceeec
Confidence 34455566655 7899998999999999988766533221 11111200 000000 12233333332222221
Q ss_pred ECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCc---EEEEEEeecCCCcEEEEE
Q psy4869 103 SLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGV---ITDIRFMSQPGHHFVVSS 179 (2435)
Q Consensus 103 d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~---V~~v~~~~~~~~~~l~S~ 179 (2435)
+.. .+....+. +.|....+.-...+++.+..+..+.|||.........+ .|... ..++-+--....-++++|
T Consensus 77 ~~~-~~~~~~~s---~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i-~~~er~~l~~~~~~g~s~~~~~i~~g 151 (967)
T KOG0974|consen 77 EAS-NQIIERFS---DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKI-QSDERCTLYSSLIIGDSAEELYIASG 151 (967)
T ss_pred chh-hhhhhhcc---ccccccchhhhcceEEEEEcCceEEEEecccCceehhc-CCCceEEEEeEEEEeccCcEEEEEec
Confidence 111 11122222 33333555556788999999999999998877755554 33332 222223222455689999
Q ss_pred eCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCC
Q psy4869 180 AKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDE 259 (2435)
Q Consensus 180 s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (2435)
+--+.|.+|+....+.-..+.+|.+.+..+.++-+|.++++.|+|.++|+|++++.....
T Consensus 152 sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------- 211 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------- 211 (967)
T ss_pred cccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------------------
Confidence 999999999998444444578999999999999999999999999999999998642100
Q ss_pred CCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeee
Q psy4869 260 PDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQ 339 (2435)
Q Consensus 260 ~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~ 339 (2435)
T Consensus 212 -------------------------------------------------------------------------------- 211 (967)
T KOG0974|consen 212 -------------------------------------------------------------------------------- 211 (967)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCC-CCeeEEEEccCCC
Q psy4869 340 KVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHT-GAVMDLKFSTDGC 418 (2435)
Q Consensus 340 ~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~-~~V~~l~~s~dg~ 418 (2435)
.+.-||...|..+.|+|+ ++++++.|-+.++|+.+.. .+..+.+|. ..|+.++..++..
T Consensus 212 ----------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~--~l~~y~~h~g~~iw~~~~~~~~~ 271 (967)
T KOG0974|consen 212 ----------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT--QLEVYDEHSGKGIWKIAVPIGVI 271 (967)
T ss_pred ----------------cccccccceeEEEEeccc--eeEEeccceEEEEEecccc--eehhhhhhhhcceeEEEEcCCce
Confidence 012389999999999998 9999999999999987653 333667775 6799999999988
Q ss_pred EEEEEeCCCeEEEEECCC
Q psy4869 419 HIFTCSTDQTLAVWDLEK 436 (2435)
Q Consensus 419 ~L~s~s~Dg~I~vwd~~t 436 (2435)
.+++++.|+.+++||+..
T Consensus 272 ~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEeeccCcchhhhhhhc
Confidence 999999999999999854
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=154.14 Aligned_cols=235 Identities=21% Similarity=0.318 Sum_probs=180.3
Q ss_pred ccCCcEEEEEECCCC-----CEEEEEeCCCeEEEEecCCceee---EEE-----eeCCCCCeeEEEEcc-CCCEEEEEeC
Q psy4869 360 GHGGEIFCSKYHPDG-----QYIASSGYDRQIFIWSVYGECEN---IGV-----MSGHTGAVMDLKFST-DGCHIFTCST 425 (2435)
Q Consensus 360 gH~~~V~~l~fspdg-----~~Lasgs~Dg~I~iwd~~~~~~~---~~~-----l~~h~~~V~~l~~s~-dg~~L~s~s~ 425 (2435)
.|.-+++.+.|.|+. .+||+. +..+|+|.+..+... ... -..+..++++..|+. |-++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 688999999999975 356654 457999988632111 111 134668999999997 7788999999
Q ss_pred CCeEEEEECCCCce---EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee---c-CcccEEEEEEC
Q psy4869 426 DQTLAVWDLEKGQR---IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM---N-NTYQVTSVAFN 498 (2435)
Q Consensus 426 Dg~I~vwd~~tg~~---v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~---~-~~~~v~sv~~s 498 (2435)
|-++.|||+++|.. ...+-.|.+.|.+++|...+..+|++.+.||.+|+||+|..+....+ . ...+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 99999999998743 55678999999999999999999999999999999999987655444 2 25567888888
Q ss_pred CC-CCEEEEE-ecCCeEEEEECCC-CcEEEEEecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCC--CCceEEE
Q psy4869 499 DT-AECVLTG-GIDNDIKMWDLRT-NSVVQKLRGHSDTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVP--GERCVKV 572 (2435)
Q Consensus 499 p~-g~~l~sg-s~dg~V~lwD~~s-~~~v~~l~~h~~~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~--~~~~v~~ 572 (2435)
++ -+++|+- -....|.|.|+|. ..++.++++|.+.|++|+|.|. ...|++++.|..+.+||+..... ...++..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 74 4567654 4457899999997 5678999999999999999996 67899999999999999974211 1122222
Q ss_pred EeCcccccccCeEEEEEcC-CCCEEEEecC
Q psy4869 573 MSGHQHNFEKNLLRCAWSV-SGLYVTAGSA 601 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~sp-dg~~Lasgs~ 601 (2435)
+. .+..|..+.|++ .+.+|+.+..
T Consensus 332 y~-----a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 332 YT-----AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred hh-----ccceeeeeeecccCCCEEEEEec
Confidence 32 234788899996 5567777653
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.8e-13 Score=163.54 Aligned_cols=492 Identities=16% Similarity=0.184 Sum_probs=308.6
Q ss_pred eEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe-CCCeEEEEEEecCC------------CEEEEEeCCCeEEEEEc
Q psy4869 888 VRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID-TGSYALSVCFVPGD------------RHVLVGTKDGRLLIVDI 954 (2435)
Q Consensus 888 V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~-~~~~v~~vafspdg------------~~Lavg~~dg~V~vwd~ 954 (2435)
-.++.|++.| .||.|+...|.|.|..+.+.+..++ +...+..|.|.|-. =+||++.-.|+|.+||.
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 4567888777 7899999999999999999998887 66778888886621 14566778999999999
Q ss_pred cCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeec
Q psy4869 955 GAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHT 1034 (2435)
Q Consensus 955 ~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1034 (2435)
..+..+..+..|.+++..++|.+.. +.. ...|+.-.....|.+|+.+.++.-++.+.
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~r-d~S-----rd~LlaIh~ss~lvLwntdtG~k~Wk~~y----------------- 153 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPAR-DDS-----RDVLLAIHGSSTLVLWNTDTGEKFWKYDY----------------- 153 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeecc-Ccc-----hheeEEecCCcEEEEEEccCCceeecccc-----------------
Confidence 9999999999999999999998875 222 14666777789999998876664333111
Q ss_pred cccccCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcC-------CCeEEEEEecCCc----------------C------
Q psy4869 1035 RTLKLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFLD-------TFKFFISLYGHKL----------------P------ 1084 (2435)
Q Consensus 1035 ~~~~~~~~v~~l~~sp-dg~~Lavg~~dg~V~i~d~~-------~~~~~~~l~~h~~----------------~------ 1084 (2435)
......|+.++| |.+.+.+-+..|.+.+.+.- .++....-..|.. .
T Consensus 154 ----s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~f 229 (1062)
T KOG1912|consen 154 ----SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYF 229 (1062)
T ss_pred ----CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhH
Confidence 123456788888 55666666667777776642 2333332222222 0
Q ss_pred ---EEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCccee
Q psy4869 1085 ---VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT--HYFFTTSKDGRVKQWDADNFERI 1159 (2435)
Q Consensus 1085 ---V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~--~~l~s~s~Dg~V~iwD~~~~~~~ 1159 (2435)
...++|+|.-+.++-......+.++|++...++.++.-..+.+.-+.+-|++ ..|++.-.||.+.+|-.+.....
T Consensus 230 ity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~ 309 (1062)
T KOG1912|consen 230 ITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTE 309 (1062)
T ss_pred HHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcc
Confidence 1234567755444445667779999999999999888777777778888765 47889999999999976542111
Q ss_pred EEE-------------EEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcee-------------------
Q psy4869 1160 VTL-------------HFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH------------------- 1207 (2435)
Q Consensus 1160 ~~~-------------~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~------------------- 1207 (2435)
... +.+... ....++..++.-.+.+.++.--.+|.+.+|.+.+|+..
T Consensus 310 f~~~~~~l~~dl~~Q~~~vr~m-~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~ 388 (1062)
T KOG1912|consen 310 FKKPNASLSMDLGEQVHVVRPM-EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLS 388 (1062)
T ss_pred ccccchhhccccccceEEEeec-hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCc
Confidence 111 001110 11112222221112334444445777888887755411
Q ss_pred ------------eEeeccCCCEEEEEEeeC-----------C-------CEEEEEECCCcEEEEECCCCceEEEEeeCCc
Q psy4869 1208 ------------KSLLAHEDSVTGVTFVPK-----------T-------HYFFTTSKDGRVKQWDADNFERIVTLHFNPN 1257 (2435)
Q Consensus 1208 ------------~~~~~h~~~V~~i~~spd-----------~-------~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~ 1257 (2435)
..-.+|.....+....|- + .+++.|...|+|.++|+.+...-..+..+..
T Consensus 389 ~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~ 468 (1062)
T KOG1912|consen 389 TKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTS 468 (1062)
T ss_pred eeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhccccc
Confidence 011245555666555441 1 3467788999999999876543333222221
Q ss_pred ccc----cCceEEEE----------EECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEec
Q psy4869 1258 VYL----PLQIQVVT----------GGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1323 (2435)
Q Consensus 1258 ~~~----~~~~~lv~----------g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~s 1323 (2435)
... .....+++ ++.-+.+.+-|++.+.. ..+.....+.+..|+.+..|
T Consensus 469 ~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGls------------------k~fR~l~~~despI~~irvS 530 (1062)
T KOG1912|consen 469 LVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS------------------KRFRGLQKPDESPIRAIRVS 530 (1062)
T ss_pred ceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccc------------------cccccCCCCCcCcceeeeec
Confidence 110 01112222 23334455666653321 11122233457889999999
Q ss_pred CCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEe-cCC----------------CEEEEEeCCCcEEEEeCC
Q psy4869 1324 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS-YDS----------------TLIATGSGDRTVKVWGLD 1386 (2435)
Q Consensus 1324 pdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~s-pdg----------------~~L~sGg~Dg~V~iwdl~ 1386 (2435)
..|+|+++...+..+.+||+++..+++.+.-...-++.+.|+ |.- +.++..+ +..+++++.
T Consensus 531 ~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~~~ 608 (1062)
T KOG1912|consen 531 SSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS--VESRIYHIT 608 (1062)
T ss_pred ccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc--ccchheehh
Confidence 999999999999999999998766554444444448888887 432 2334333 233333332
Q ss_pred CCceEEE--------ecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1387 YGDCHKS--------LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1387 ~gk~~~~--------~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
....+.. .+.....+.+++| ++.+++-|..||.|.+||+..+
T Consensus 609 ~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R 658 (1062)
T KOG1912|consen 609 LSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRR 658 (1062)
T ss_pred hhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccc
Confidence 2222111 1111234566888 7789999999999999997764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-12 Score=161.74 Aligned_cols=243 Identities=12% Similarity=0.191 Sum_probs=169.3
Q ss_pred CCcEEEEEECCCCCEEEEEe-CCCeEEEEecCCc-e-eeEEEeeCCCCCeeEEEEccCCCEEEEEeC-CCeEEEEECCC-
Q psy4869 362 GGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGE-C-ENIGVMSGHTGAVMDLKFSTDGCHIFTCST-DQTLAVWDLEK- 436 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs-~Dg~I~iwd~~~~-~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~vwd~~t- 436 (2435)
.+....++++|++++|++++ .++.|.+|++... . ...... ...+....++|+|++++|++++. ++.|.+||+++
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 34566789999999987765 5789999998632 1 112211 23345678999999999988875 78999999964
Q ss_pred C---ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceE-------eecCcccEEEEEECCCCCEEEE
Q psy4869 437 G---QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV-------SMNNTYQVTSVAFNDTAECVLT 506 (2435)
Q Consensus 437 g---~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~-------~~~~~~~v~sv~~sp~g~~l~s 506 (2435)
+ +.+..+.+ ......+.+.|++..++++...++.|.+||+.+...+. ..........++|+|+|+++++
T Consensus 113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC 191 (330)
T ss_pred CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE
Confidence 3 22333322 23356677899998888888899999999997633221 1223445678999999999998
Q ss_pred Eec-CCeEEEEECCC--C--cEEEEEecC------CCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCCCCCceEEEEe
Q psy4869 507 GGI-DNDIKMWDLRT--N--SVVQKLRGH------SDTVTGLSLSPDGSYILSNAM-DNTVRIWDIRPYVPGERCVKVMS 574 (2435)
Q Consensus 507 gs~-dg~V~lwD~~s--~--~~v~~l~~h------~~~V~~i~~spdg~~las~s~-Dg~I~lWdl~~~~~~~~~v~~~~ 574 (2435)
++. ++.|.+||++. + +.+..+..+ ......+.|+|||++|+++.. ++.|.+|++.......+.+....
T Consensus 192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~ 271 (330)
T PRK11028 192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP 271 (330)
T ss_pred EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe
Confidence 876 89999999973 3 334444322 122346899999999998864 79999999964211112222222
Q ss_pred CcccccccCeEEEEEcCCCCEEEEecC-CCeEEEEECC
Q psy4869 575 GHQHNFEKNLLRCAWSVSGLYVTAGSA-DKCVYIWDTT 611 (2435)
Q Consensus 575 ~h~~~~~~~i~~v~~spdg~~Lasgs~-Dg~V~iwd~~ 611 (2435)
. ......+.|+|||++|++++. +++|.+|++.
T Consensus 272 ~-----~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 272 T-----ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred c-----cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 1 123456899999999998775 8999999874
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-11 Score=155.58 Aligned_cols=338 Identities=15% Similarity=0.102 Sum_probs=218.1
Q ss_pred CEEEEEE-CCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEE
Q psy4869 1053 KLLAVSL-LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131 (2435)
Q Consensus 1053 ~~Lavg~-~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~ 1131 (2435)
+++++.. .++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 4555554 46999999999999999998655445567899999999999999999999999999999987544 467899
Q ss_pred EccCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEee-cccccCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCCceee
Q psy4869 1132 FVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISL-YGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHK 1208 (2435)
Q Consensus 1132 fsp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s~dg~~l~sgs~-Dg~V~iwd~~t~~~~~ 1208 (2435)
++++|+++++++ .++.+.++|.++.+.+..+...... ......+..+..++....++..-. .+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999988775 6899999999998888777522111 113456778888888885555544 4889888987765432
Q ss_pred -EeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccc
Q psy4869 1209 -SLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVN 1286 (2435)
Q Consensus 1209 -~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~ 1286 (2435)
.............|.|++++++++. .++.|.++|..+.+.+..+....... +... ..+-++
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~-~~~~----------~~~php------ 227 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH-PGPG----------ANFPHP------ 227 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE-ETTE----------EEEEET------
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccc-cccc----------ccccCC------
Confidence 2223455778899999999988765 57789999998876655444322110 0000 000000
Q ss_pred ccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEec
Q psy4869 1287 READEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY 1366 (2435)
Q Consensus 1287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~sp 1366 (2435)
-.+.+.. ....+...+..-..+.+.+|+...++.+..+....++ .-+..+|
T Consensus 228 --------------------------~~g~vw~--~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP 278 (369)
T PF02239_consen 228 --------------------------GFGPVWA--TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP 278 (369)
T ss_dssp --------------------------TTEEEEE--EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T
T ss_pred --------------------------CcceEEe--eccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC
Confidence 0011111 1122333323333456668899999999999987767 7788899
Q ss_pred CCCEEEEE----eCCCcEEEEeCCCCceEEEecccc-cceEEEEEeeCCCEEE-EEeCCC-cEEEEECCCceeEEEEe
Q psy4869 1367 DSTLIATG----SGDRTVKVWGLDYGDCHKSLLAHE-DSVTGVTFVPKTHYFF-TTSKDG-RVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1367 dg~~L~sG----g~Dg~V~iwdl~~gk~~~~~~~h~-~~V~~laf~P~~~~la-Sgg~Dg-~V~lWd~~~~~~l~~~~ 1437 (2435)
|+++|.+. ...+.|.++|.++.+.+..+.... .++..+.|+++|..+- |.-.++ .|.++|..+.+.++.++
T Consensus 279 ~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 279 DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99999998 455899999999998887765433 3699999999996544 443333 79999999999999987
|
... |
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.6e-10 Score=143.40 Aligned_cols=270 Identities=15% Similarity=0.253 Sum_probs=180.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEecCCcee-----eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC
Q psy4869 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE-----NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG 437 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-----~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg 437 (2435)
+++++.++-. .||..| ..-.|.+||+..+.. .......|...=.... .+.+++++..-+.+..=+...
T Consensus 8 ~~l~~~~~~~--~~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l---~~~~~v~~~~~~~v~~~~~~~- 80 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKL---LSGKIVTCAKSDEVYVKEASN- 80 (967)
T ss_pred ccccchhhcc--ceeeec-CCCceEEeeCCchhHhhhhhhhccccccccccccee---ccceEEEEEeecceeecchhh-
Confidence 3444444433 566554 445688999875432 2222334411000000 233555555433333322211
Q ss_pred ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccE-----EEEEECCCCCEEEEEecCCe
Q psy4869 438 QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQV-----TSVAFNDTAECVLTGGIDND 512 (2435)
Q Consensus 438 ~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v-----~sv~~sp~g~~l~sgs~dg~ 512 (2435)
+.+..+. ..+....+.... ..++.+..++.+.+||...+.......+.... .-+.++++.=++++|+.-+.
T Consensus 81 ~~~~~~s---~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 81 QIIERFS---DWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred hhhhhcc---ccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence 1111222 223333333333 45667777889999999887776666544432 22344666678999999999
Q ss_pred EEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCC
Q psy4869 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592 (2435)
Q Consensus 513 V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spd 592 (2435)
|.+|+....+.-..+.+|.+.|..+.|+-||+++++.|.|+++|+|++++..... ...-+|. ..+..++|.|+
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHs----aRvw~~~~~~n 229 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHS----ARVWACCFLPN 229 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---ccccccc----ceeEEEEeccc
Confidence 9999987443333689999999999999999999999999999999998632211 2333453 58899999998
Q ss_pred CCEEEEecCCCeEEEEECCCCcEEEEecCCC-CCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 593 GLYVTAGSADKCVYIWDTTTRRIAYKLPGHN-GSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 593 g~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~-~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.|++++.|.+.++|+. +++.+.++.+|. +.|..++.+++...+++++.||.+++|++.
T Consensus 230 --~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 230 --RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred --eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 8999999999999965 455556888887 469999999999999999999999999986
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=168.28 Aligned_cols=270 Identities=15% Similarity=0.192 Sum_probs=182.1
Q ss_pred EEccCCceeEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCccee-EEEEEEEeecccccCeEEEEEeCCCCE
Q psy4869 1109 WGLDYGDCHKSLLAHEDSVTGVTFVPKT-HYFFTTSKDGRVKQWDADNFERI-VTLHFFISLYGHKLPVLSLDMSYDSTL 1186 (2435)
Q Consensus 1109 Wd~~t~~~~~~l~~h~~~V~~v~fsp~~-~~l~s~s~Dg~V~iwD~~~~~~~-~~~~~~~~~~~h~~~V~~l~~s~dg~~ 1186 (2435)
|+. .|..+..+..|...+..++.++.. .++++|+.||+|++||.+....- ...+...+.......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 654 477888888899988899888755 89999999999999998754332 222222333335778999999999999
Q ss_pred EEEEeCCCcEEEEEccCCc-------eeeEeeccC-CCEEEE-EEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCc
Q psy4869 1187 IATGSGDRTVKVWGLDYGD-------CHKSLLAHE-DSVTGV-TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN 1257 (2435)
Q Consensus 1187 l~sgs~Dg~V~iwd~~t~~-------~~~~~~~h~-~~V~~i-~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~ 1257 (2435)
+|+++.||.|++.+++-.+ +.+..+.+. +.+.++ +|....
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~------------------------------- 1161 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIV------------------------------- 1161 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccc-------------------------------
Confidence 9999999999999987521 111111111 111111 111100
Q ss_pred ccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCe
Q psy4869 1258 VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTT 1337 (2435)
Q Consensus 1258 ~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~ 1337 (2435)
....++.+...+.+..||.++....+..+. ....+.+.+++.+|.+.+++.|+..|.
T Consensus 1162 ----~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-------------------~~~hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1162 ----QSHVLVYATDLSRIVSWDTRMRHDAWRLKN-------------------QLRHGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred ----cceeEEEEEeccceEEecchhhhhHHhhhc-------------------CccccceeEEEecCCceEEEEecCCce
Confidence 001234444445555555553332222111 112577999999999999999999999
Q ss_pred EEEEEcccceEEEEec-CCCCCeEEEEEecC---CCEEEEEeC--CCcEEEEeCCCCceEEEeccc--------------
Q psy4869 1338 VKIFFLDTFKFFISLY-GHKLPVLSLDMSYD---STLIATGSG--DRTVKVWGLDYGDCHKSLLAH-------------- 1397 (2435)
Q Consensus 1338 V~v~d~~~~k~i~~~~-~h~~~V~~la~spd---g~~L~sGg~--Dg~V~iwdl~~gk~~~~~~~h-------------- 1397 (2435)
+.+||+.=+.++.+.. .+..++..+...|- ...+++++. .+.|.+|++.+|.+...+-..
T Consensus 1219 l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~ 1298 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSND 1298 (1431)
T ss_pred EEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhccccc
Confidence 9999998888888777 55678888877663 345555554 788999999999776654322
Q ss_pred -----ccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeE
Q psy4869 1398 -----EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1433 (2435)
Q Consensus 1398 -----~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l 1433 (2435)
.-......+.-.+..+.+||.|..|+.||....++-
T Consensus 1299 ~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1299 ARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 112233444445678899999999999999976654
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-11 Score=141.59 Aligned_cols=237 Identities=16% Similarity=0.209 Sum_probs=184.8
Q ss_pred CCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEE-EeCCCeEEEEEEecCCCEEEEEe--CCCeEEEEEccCCceee
Q psy4869 885 HSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRT-IDTGSYALSVCFVPGDRHVLVGT--KDGRLLIVDIGAGEILE 961 (2435)
Q Consensus 885 ~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~-l~~~~~v~~vafspdg~~Lavg~--~dg~V~vwd~~sg~~v~ 961 (2435)
...+....|..|...|..|.....++|.......... ...+..+..+-|+. .+||+.+ +-.++.+++.+.+..++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEE
Confidence 3467778899999999999999999999876554322 23556666777765 4555433 33568999999999888
Q ss_pred cccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCC
Q psy4869 962 DIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1041 (2435)
Q Consensus 962 ~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1041 (2435)
.+.- ..+|.+|.+..+ +|+++-. ..|.+||+..++.... ++ .......
T Consensus 83 e~~f-pt~IL~VrmNr~------------RLvV~Le-e~IyIydI~~MklLhT-----------------I~-t~~~n~~ 130 (391)
T KOG2110|consen 83 EIFF-PTSILAVRMNRK------------RLVVCLE-ESIYIYDIKDMKLLHT-----------------IE-TTPPNPK 130 (391)
T ss_pred EEec-CCceEEEEEccc------------eEEEEEc-ccEEEEecccceeehh-----------------hh-ccCCCcc
Confidence 7632 237889988765 5666666 4499999976553221 00 0112355
Q ss_pred CEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCc-EEEEEccCCceeE
Q psy4869 1042 QVLCARVSPDSKLLAVSLL--DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT-VKVWGLDYGDCHK 1118 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~--dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~-I~vWd~~t~~~~~ 1118 (2435)
++.++++++.+.+||.-+. .|.|.+||..+.+....+..|.+++.+++|+++|.+||+++..|+ |||+.+.+|+.+.
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~ 210 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY 210 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence 6788888888889997653 499999999999999999999999999999999999999999997 6899999999999
Q ss_pred EEec--cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1119 SLLA--HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155 (2435)
Q Consensus 1119 ~l~~--h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~ 1155 (2435)
.++. ....|.+++|+|++.+|.+.+..++|++|.+..
T Consensus 211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 9975 345789999999999999999999999998764
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-13 Score=151.20 Aligned_cols=206 Identities=24% Similarity=0.231 Sum_probs=173.6
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC---CeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEc-cCC-
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT---FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL-DYG- 1114 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~---~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~-~t~- 1114 (2435)
.++|+|.+|++|+..+|++-.+..|.||.... ++...++..|...|+.|+|+|..+.|++|+.|..-++|.. ..+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 57899999999999999999999999998753 5678889999999999999999999999999999999998 444
Q ss_pred -ceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC
Q psy4869 1115 -DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1193 (2435)
Q Consensus 1115 -~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 1193 (2435)
++...+..++...++|.|+|.++.|++|+..+.|.+|-++.......-+.+ ...+...|++++|+|++-++++|+.|
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi--kkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI--KKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh--CCccccceeeeeccCCcceecccccC
Confidence 345566779999999999999999999999999999988766554433211 13567889999999999999999999
Q ss_pred CcEEEEEcc------------------CCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCc
Q psy4869 1194 RTVKVWGLD------------------YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1247 (2435)
Q Consensus 1194 g~V~iwd~~------------------t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~ 1247 (2435)
+..|+|..- -|+++.++....+.|..+.|+|+|+.|+-.+.|..+.+-|...+.
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 999999632 123344444556789999999999999999999999999987664
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=154.14 Aligned_cols=194 Identities=23% Similarity=0.371 Sum_probs=155.3
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe-
Q psy4869 366 FCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK- 444 (2435)
Q Consensus 366 ~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~- 444 (2435)
.+++|+.+|..|++|+.||.+|||++... ..+.....|.+.|.+|.|+|||+.|++.+.| ..+||+.++|..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 78999999999999999999999997543 3344567799999999999999999999999 99999999997666554
Q ss_pred -ccCccccccCcccCC---CeEE-EEEeCCCeEEEEeCCCCcc------eEeecCcccEEEEEECCCCCEEEEEecCCeE
Q psy4869 445 -GHSTFVNSCDPVRRG---QLLI-ASGSDDCTVKVWDPRKKNQ------AVSMNNTYQVTSVAFNDTAECVLTGGIDNDI 513 (2435)
Q Consensus 445 -~h~~~v~sv~~~~~~---~~ll-asgs~Dg~I~vwD~~~~~~------~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V 513 (2435)
+-......|.|..++ ..++ +.-..-+.|+.||+..... .........|++++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223345567776654 2333 3344456677777653222 1111334589999999999999999999999
Q ss_pred EEEECCCCcEEEEE-ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 514 KMWDLRTNSVVQKL-RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 514 ~lwD~~s~~~v~~l-~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
.||+..+.+.++-. +.|...|+.+.|+||.+++++.+.|.++.|..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999998887766 5799999999999999999999999999988775
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-12 Score=144.72 Aligned_cols=245 Identities=21% Similarity=0.211 Sum_probs=181.7
Q ss_pred cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc---eeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q psy4869 1080 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD---CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1156 (2435)
Q Consensus 1080 ~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~---~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~ 1156 (2435)
-...+|+|.+|++|+..++.+.....|.||.....+ ..+++..|...|+.|.|.|..+.|++|+.|+.-++|....+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999986554 67788899999999999999999999999999999998544
Q ss_pred ceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcee----eEeeccCCCEEEEEEeeCCCEEEEE
Q psy4869 1157 ERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH----KSLLAHEDSVTGVTFVPKTHYFFTT 1232 (2435)
Q Consensus 1157 ~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~----~~~~~h~~~V~~i~~spd~~~lvsg 1232 (2435)
.... +...+..+....+++.|+|.++.|++|+....|.||-++...-- ..-+.+...|.++.|+|++-+|++|
T Consensus 88 ~~Wk---ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 88 GTWK---PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred Ceec---cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 3322 22234467899999999999999999999999999998854421 2334677889999999999999999
Q ss_pred ECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccc
Q psy4869 1233 SKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK 1312 (2435)
Q Consensus 1233 s~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1312 (2435)
+.|+..+++..- +..++..+. - .-|+-+ .+...+-.....
T Consensus 165 s~D~k~rVfSay----IK~Vdekpa-p----------------~pWgsk-------------------~PFG~lm~E~~~ 204 (361)
T KOG1523|consen 165 STDGKCRVFSAY----IKGVDEKPA-P----------------TPWGSK-------------------MPFGQLMSEASS 204 (361)
T ss_pred ccCcceeEEEEe----eeccccCCC-C----------------CCCccC-------------------CcHHHHHHhhcc
Confidence 999999987431 000000000 0 001100 000111111114
Q ss_pred ccccEEEEEecCCcceeEEeecCCeEEEEEcccce-EEEEecCCCCCeEEEEEecC
Q psy4869 1313 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK-FFISLYGHKLPVLSLDMSYD 1367 (2435)
Q Consensus 1313 ~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k-~i~~~~~h~~~V~~la~spd 1367 (2435)
..+.+..+.|+|+|..||-.+.|+.+.+-|..... .+.......-|.+++.|-.+
T Consensus 205 ~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 205 SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 57899999999999999999999999999986653 34444444477788877554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.5e-13 Score=173.11 Aligned_cols=234 Identities=17% Similarity=0.201 Sum_probs=169.1
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC---CeEEEEECCCCce--EEEEeccCccccccCccc
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD---QTLAVWDLEKGQR--IKKMKGHSTFVNSCDPVR 457 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D---g~I~vwd~~tg~~--v~~l~~h~~~v~sv~~~~ 457 (2435)
+..|.+||..+.. ...+..|...+..++|+|||++|+.++.+ ..|++||+.+++. +..+.+| ...+.|+|
T Consensus 183 ~~~i~i~d~dg~~--~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN--QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC--ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC
Confidence 4789999987654 23456788899999999999999988754 3699999988764 3333443 34678999
Q ss_pred CCCeEEEEEeCCCeEEEE--eCCCCcceEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCCC-cEEEEEecCCCC
Q psy4869 458 RGQLLIASGSDDCTVKVW--DPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRTN-SVVQKLRGHSDT 533 (2435)
Q Consensus 458 ~~~~llasgs~Dg~I~vw--D~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s~-~~v~~l~~h~~~ 533 (2435)
++..++++.+.++.+.|| |+..+.......+...+....|+|||+.|+.++ .+|...||++... .....+ .+..
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~- 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG- 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence 998887777778876655 666655444334555678899999999877655 5677888876432 222333 4443
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEEC--C
Q psy4869 534 VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDT--T 611 (2435)
Q Consensus 534 V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~--~ 611 (2435)
..+.|+|||++|+..+.++ +.+||+.. +......... ....+.|+|||++|+.++.++.+.+|++ .
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~----g~~~~lt~~~------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTS----GSTEVLSSTF------LDESPSISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCC----CCeEEecCCC------CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 4678999999999887765 55589874 2222222221 1235789999999999999998888875 4
Q ss_pred CCcEEEEecCCCCCeeEEEEcCCC
Q psy4869 612 TRRIAYKLPGHNGSVNDVQFHPKE 635 (2435)
Q Consensus 612 s~~~~~~l~~h~~~V~~l~fspd~ 635 (2435)
+|+.+..+.+|.+.+..++|+|-.
T Consensus 404 ~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 404 DGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred CCCceEEccCCCCCCCCcccCCCC
Confidence 688888898999999999999853
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-12 Score=166.23 Aligned_cols=292 Identities=17% Similarity=0.249 Sum_probs=207.9
Q ss_pred eEecccCCcEEEEEECCCC-CEEEEEeCCCeEEEEecCCc------eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCe
Q psy4869 356 MLLEGHGGEIFCSKYHPDG-QYIASSGYDRQIFIWSVYGE------CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQT 428 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~ 428 (2435)
..++.|...|..++.++.. .++++|+.||+|++||.+.- ......+....+.+..+...+.++.++.++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 5678899999998887754 99999999999999998631 1122233345789999999999999999999999
Q ss_pred EEEEECCCC--c-----eEEEEeccC--ccccccCcccCCC-eEEEEEeCCCeEEEEeCCCCcceEeec---CcccEEEE
Q psy4869 429 LAVWDLEKG--Q-----RIKKMKGHS--TFVNSCDPVRRGQ-LLIASGSDDCTVKVWDPRKKNQAVSMN---NTYQVTSV 495 (2435)
Q Consensus 429 I~vwd~~tg--~-----~v~~l~~h~--~~v~sv~~~~~~~-~llasgs~Dg~I~vwD~~~~~~~~~~~---~~~~v~sv 495 (2435)
|++.+++.- + ..+....+. ..+..-++..... ..++.+..-+.|..||++.....+..+ ..+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998752 1 122222222 2222223333322 477788888999999999877766653 45679999
Q ss_pred EECCCCCEEEEEecCCeEEEEECCCCcEEEEEe-cCCCCEEEEEEcCCC---CEEEEEE--CCCcEEEEEcCCCCCCCce
Q psy4869 496 AFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR-GHSDTVTGLSLSPDG---SYILSNA--MDNTVRIWDIRPYVPGERC 569 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~-~h~~~V~~i~~spdg---~~las~s--~Dg~I~lWdl~~~~~~~~~ 569 (2435)
+.+|.+.+++.|...|.+.+||+|=+.++..+. ++..+|+.+..+|-. ...++++ ..+.|.+|++... .+
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g----~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG----LR 1277 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC----cc
Confidence 999999999999999999999999999998885 566788888887743 4555444 5788999999852 33
Q ss_pred EEEEeCc-----------cc----ccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEE------------------
Q psy4869 570 VKVMSGH-----------QH----NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIA------------------ 616 (2435)
Q Consensus 570 v~~~~~h-----------~~----~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~------------------ 616 (2435)
...+... .. ...-....+++..-+.++++|+.|..|+.||....+..
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence 3333221 00 00011233455555678999999999999996432110
Q ss_pred -----------E-------------------Ee--------cCCCCCeeEEEEcCC-CCEEEEEECCCcEEEec
Q psy4869 617 -----------Y-------------------KL--------PGHNGSVNDVQFHPK-EPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 617 -----------~-------------------~l--------~~h~~~V~~l~fspd-~~~Lasgs~Dg~I~vWd 651 (2435)
. .+ ..|...|+++++... ..+|++++.||.|++|.
T Consensus 1358 ~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1358 DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 00 137788999888664 45999999999999994
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-12 Score=153.24 Aligned_cols=200 Identities=20% Similarity=0.252 Sum_probs=161.2
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec-
Q psy4869 1044 LCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA- 1122 (2435)
Q Consensus 1044 ~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~- 1122 (2435)
.+++|+.+|..|++|+.||.+|||+......+.....|...|.+++|+|||++|++-+.| ..+||+.++|.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999999888888888899999999999999999999999 999999999977766642
Q ss_pred -cCCCEEEEEEccCC---C--EEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcE
Q psy4869 1123 -HEDSVTGVTFVPKT---H--YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196 (2435)
Q Consensus 1123 -h~~~V~~v~fsp~~---~--~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 1196 (2435)
.......+.|..++ . .++.....+.|+.||+.....-..++ ..........|.+++.+.+|++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~-~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR-LRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-hhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 33456778888766 2 33333455678877765433321111 11122334579999999999999999999999
Q ss_pred EEEEccCCceeeEee-ccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCC
Q psy4869 1197 KVWGLDYGDCHKSLL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1245 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~~-~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~ 1245 (2435)
-|++..+.+.+..++ .|...|+.+.|+|+.+.+++.+.|....+..+..
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999888766554 7999999999999999999999998888876644
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=155.16 Aligned_cols=238 Identities=20% Similarity=0.202 Sum_probs=169.1
Q ss_pred ceEEEEecCCCcEEEEecCCcEEEEeCCCCcee-----EEEeCCCeEEEEEE-----ecCCCEEEEEeCCCeEEEEEccC
Q psy4869 887 EVRALAFSSDNLALVSACASQVKIWNRPSLSCL-----RTIDTGSYALSVCF-----VPGDRHVLVGTKDGRLLIVDIGA 956 (2435)
Q Consensus 887 ~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~-----~~l~~~~~v~~vaf-----spdg~~Lavg~~dg~V~vwd~~s 956 (2435)
.+....++-.|.+|.---...+.||+.+.+..+ .++..+..+.|-+| .+++--|++|-.-|.|.+.|...
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 344455556677776666678999998854443 22333444445555 34666788999999999998876
Q ss_pred Cceeecc--cc--cccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEccccccccc--------cccccccccc
Q psy4869 957 GEILEDI--PA--HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE--------ADEETKDVSR 1024 (2435)
Q Consensus 957 g~~v~~~--~~--h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~--------~~~~~~~~~~ 1024 (2435)
-++...+ .. ....|+++.|.+.. ..+|+..-.+|.+.+++.....-... .+...+....
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~---------~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGS---------DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCC---------CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeee
Confidence 4322222 11 23589999999875 35788888899999998632210000 0000110000
Q ss_pred ccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCC
Q psy4869 1025 SHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDR 1104 (2435)
Q Consensus 1025 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg 1104 (2435)
....-... .+...-.+.|..++|+|||++||+.+.||.++||+.++.+++..++..-+...|++|+|||+++++|++|.
T Consensus 276 sk~~rNPv-~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 276 SKKTRNPV-ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred ccccCCcc-ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence 00000000 01111256899999999999999999999999999999888888888888999999999999999999999
Q ss_pred cEEEEEccCCceeEEEeccCCCEEEEEEcc
Q psy4869 1105 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVP 1134 (2435)
Q Consensus 1105 ~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp 1134 (2435)
-|.||.+..++.+..-++|+..|+.|+|.|
T Consensus 355 LVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 355 LVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999994
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-13 Score=160.16 Aligned_cols=268 Identities=21% Similarity=0.256 Sum_probs=213.8
Q ss_pred eEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEc
Q psy4869 927 YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQL 1006 (2435)
Q Consensus 927 ~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l 1006 (2435)
....+.++.+|++|+.|+..|.|..+|+.++++.+.+.. ...|..+.|..+. .|+.+.....+.+||-
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHne-----------q~~AVAQK~y~yvYD~ 198 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNE-----------QFFAVAQKKYVYVYDN 198 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcch-----------HHHHhhhhceEEEecC
Confidence 445678999999999999999999999999999988854 3478889998774 4555566688999985
Q ss_pred ccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEE
Q psy4869 1007 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVL 1086 (2435)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~ 1086 (2435)
.+-++ .. ++....|..+.|-|.--+|++++..|.++-.|+..|+.+..+....+.+.
T Consensus 199 ~GtEl------------------HC-----lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~ 255 (545)
T KOG1272|consen 199 NGTEL------------------HC-----LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD 255 (545)
T ss_pred CCcEE------------------ee-----hhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccc
Confidence 43221 11 22346788899999999999999999999999999999999998889999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEE
Q psy4869 1087 SLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFI 1166 (2435)
Q Consensus 1087 sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~ 1166 (2435)
.+.-+|-+..+-.|...|+|.+|.....+++..+..|.++|.+|++.++|+++++.+.|..++|||++....+..+.
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~--- 332 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR--- 332 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987665543
Q ss_pred eecccccCeEEEEEeCCCCEEEEEeCCCcEEEEE-ccCC--ceeeEeecc--CCCEEEEEEeeCCCEEEEEECCCcE
Q psy4869 1167 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG-LDYG--DCHKSLLAH--EDSVTGVTFVPKTHYFFTTSKDGRV 1238 (2435)
Q Consensus 1167 ~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd-~~t~--~~~~~~~~h--~~~V~~i~~spd~~~lvsgs~Dg~I 1238 (2435)
. ..+...++++..| +|| .+....|.||. .-.+ ..-.-+..| .++|..+.|.|-+..|-.|...|.-
T Consensus 333 ---t-p~~a~~ls~Sqkg-lLA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 333 ---T-PHPASNLSLSQKG-LLA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGIT 403 (545)
T ss_pred ---c-CCCcccccccccc-cee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCce
Confidence 1 4566777887554 333 44556799994 2221 222222233 3589999999988877777665543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=144.23 Aligned_cols=318 Identities=15% Similarity=0.160 Sum_probs=204.7
Q ss_pred cCCcEEEEeCCCCceeEEEeCCCeE-EEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCC
Q psy4869 904 CASQVKIWNRPSLSCLRTIDTGSYA-LSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNP 982 (2435)
Q Consensus 904 ~~~~V~Iwd~~~~~~~~~l~~~~~v-~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~ 982 (2435)
.++.|.|.|..+.+.+..++.+..+ ..+.|+|||+++++...||.|.++|+.+++++.+++.... ...+++++|+
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG--- 89 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDG--- 89 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TT---
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCC---
Confidence 4589999999999999999965544 4578999999999999999999999999999999977554 5789999987
Q ss_pred CCcCCcceEEE-EEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECC
Q psy4869 983 NVYLPLQIQVV-TGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD 1061 (2435)
Q Consensus 983 ~~~~p~~~~l~-sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~d 1061 (2435)
.+++ +.-.++.|.++|.+..+.... +.............+..+..++....+++...+
T Consensus 90 -------~~~~v~n~~~~~v~v~D~~tle~v~~--------------I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 90 -------KYVYVANYEPGTVSVIDAETLEPVKT--------------IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp -------TEEEEEEEETTEEEEEETTT--EEEE--------------EE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred -------CEEEEEecCCCceeEeccccccceee--------------cccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 3454 445689999999764332111 000000000134567888889999877776655
Q ss_pred -CcEEEEEcCCCeEEE-EEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEEccCCceeEEEec----cCCCEEEEE---
Q psy4869 1062 -TTVKIFFLDTFKFFI-SLYGHKLPVLSLDMSYDSTLIATG-SGDRTVKVWGLDYGDCHKSLLA----HEDSVTGVT--- 1131 (2435)
Q Consensus 1062 -g~V~i~d~~~~~~~~-~l~~h~~~V~sl~~spdg~~L~Sg-s~Dg~I~vWd~~t~~~~~~l~~----h~~~V~~v~--- 1131 (2435)
+.|-+.|..+.+.+. .............|+|++++++.+ ..++.|-++|.++++.+..+.. |...+..+-
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence 888888876544332 222234457789999999987664 5577899999998887766532 333333221
Q ss_pred ----Ecc--CCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEE----eCCCcEEEEEc
Q psy4869 1132 ----FVP--KTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG----SGDRTVKVWGL 1201 (2435)
Q Consensus 1132 ----fsp--~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg----s~Dg~V~iwd~ 1201 (2435)
|.. .+...++.-....+.+||..+.+.+..+. ....+ .-+..+|+++++++. ...+.|.++|.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~------~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP------TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-------SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEE------CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEEC
Confidence 211 22222222233456678888888777764 34444 778889999999998 44588999999
Q ss_pred cCCceeeEeeccC-CCEEEEEEeeCCCEEEEEECCC--cEEEEECCCCceEEEEe
Q psy4869 1202 DYGDCHKSLLAHE-DSVTGVTFVPKTHYFFTTSKDG--RVKQWDADNFERIVTLH 1253 (2435)
Q Consensus 1202 ~t~~~~~~~~~h~-~~V~~i~~spd~~~lvsgs~Dg--~I~vwD~~~~~~v~~~~ 1253 (2435)
++.+.+..+.... ..+..+.|+++|+.+..+.+++ .|.+||..+.+.+..+.
T Consensus 302 ~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 302 KTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp CGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9998777765333 3599999999999988887655 49999999999888776
|
... |
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-10 Score=141.23 Aligned_cols=328 Identities=18% Similarity=0.200 Sum_probs=215.6
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEE-----EEC-----CCcEEEEE
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIAT-----GSG-----DRTVKVWG 1110 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~S-----gs~-----Dg~I~vWd 1110 (2435)
......+++++|+++|.+. +..+.|++...+..+.+.... .+.++.|+|.+.+|.+ -.. .-.+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3467789999999999887 778999998887644444433 7999999999988875 112 23577999
Q ss_pred ccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCC--CEEE
Q psy4869 1111 LDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS--TLIA 1188 (2435)
Q Consensus 1111 ~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg--~~l~ 1188 (2435)
++++.....+......-+...|+.|+. +++--..+.+++|++.+.+.... .-|...|..+.++|.+ ..++
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEs-l~arlv~nev~f~~~~~f~~~~~-------kl~~~~i~~f~lSpgp~~~~vA 183 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDES-LAARLVSNEVQFYDLGSFKTIQH-------KLSVSGITMLSLSPGPEPPFVA 183 (566)
T ss_pred eccceehhheehhhhcCcccccccchh-hhhhhhcceEEEEecCCccceee-------eeeccceeeEEecCCCCCceEE
Confidence 999766665554333336888988765 33334457899999987543322 2367789999999863 3444
Q ss_pred E-----EeCCCcEEEEEccCCceeeEee---ccCCCEEEEEEeeCCCEEEE-EECCCcEEEEECCCCceEEEEeeCCccc
Q psy4869 1189 T-----GSGDRTVKVWGLDYGDCHKSLL---AHEDSVTGVTFVPKTHYFFT-TSKDGRVKQWDADNFERIVTLHFNPNVY 1259 (2435)
Q Consensus 1189 s-----gs~Dg~V~iwd~~t~~~~~~~~---~h~~~V~~i~~spd~~~lvs-gs~Dg~I~vwD~~~~~~v~~~~~~~~~~ 1259 (2435)
+ +|.-..||||..........+. -....=-.+.|.+-+.-|+. ++. |+.. ....|
T Consensus 184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLast-------dVDk---------tn~SY 247 (566)
T KOG2315|consen 184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLAST-------DVDK---------TNASY 247 (566)
T ss_pred EEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEE-------eecC---------CCccc
Confidence 3 3556779999876322111110 01112223455554433221 111 1100 00000
Q ss_pred ccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEE--eecCCe
Q psy4869 1260 LPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV--SLLDTT 1337 (2435)
Q Consensus 1260 ~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lav--gs~dG~ 1337 (2435)
. ++..+++.+.+-. .. .....-+++|.++.|+|+|+.|++ |-+...
T Consensus 248 Y----------GEq~Lyll~t~g~-----------------s~-----~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAk 295 (566)
T KOG2315|consen 248 Y----------GEQTLYLLATQGE-----------------SV-----SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAK 295 (566)
T ss_pred c----------ccceEEEEEecCc-----------------eE-----EEecCCCCCceEEEECCCCCEEEEEEecccce
Confidence 0 1222333333200 00 001123689999999999999987 678889
Q ss_pred EEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEE
Q psy4869 1338 VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD---RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF 1414 (2435)
Q Consensus 1338 V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~D---g~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~la 1414 (2435)
+.|||++ ++++..+. .++-.++-|+|.|++|+.+|.+ |.|-|||+.+.|++..+..- +-+-++|+|||.+|+
T Consensus 296 vtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 296 VTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFL 370 (566)
T ss_pred EEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEE
Confidence 9999964 34544444 5677888899999999998876 88999999999999887665 457889999999999
Q ss_pred EEe------CCCcEEEEECCCcee
Q psy4869 1415 TTS------KDGRVKQWDADNFER 1432 (2435)
Q Consensus 1415 Sgg------~Dg~V~lWd~~~~~~ 1432 (2435)
|+. .|+.++||++.....
T Consensus 371 TATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 371 TATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred EEeccccEEecCCeEEEEecCcee
Confidence 876 588999999997543
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.8e-12 Score=145.15 Aligned_cols=262 Identities=15% Similarity=0.124 Sum_probs=192.3
Q ss_pred CCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q psy4869 1124 EDSVTGVTFVPKT--HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1124 ~~~V~~v~fsp~~--~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~ 1201 (2435)
...|..++|.-++ ..+..++.|..+..+.+..+.................+|..+... ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 3456666776544 355555577788888877765555443333344556677776654 347788889999999998
Q ss_pred cCCc----eeeEeeccCCCEEEEEEeeCC-CEEEEEECC--CcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCe
Q psy4869 1202 DYGD----CHKSLLAHEDSVTGVTFVPKT-HYFFTTSKD--GRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKS 1274 (2435)
Q Consensus 1202 ~t~~----~~~~~~~h~~~V~~i~~spd~-~~lvsgs~D--g~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~ 1274 (2435)
+.+. .+..+..+ .++..+.-++.. ..+++||.. ..+.+||+.+.+++.+-...++.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD---------------- 195 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND---------------- 195 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc----------------
Confidence 8554 12223222 455666666643 344457777 67788887765444332221111
Q ss_pred EEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCC--cceeEEeecCCeEEEEEccc-ceEEEE
Q psy4869 1275 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD--SKLLAVSLLDTTVKIFFLDT-FKFFIS 1351 (2435)
Q Consensus 1275 v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spd--g~~lavgs~dG~V~v~d~~~-~k~i~~ 1351 (2435)
.......-++..+.|-+. ...||+++.-+.|++||... .+++..
T Consensus 196 ---------------------------------~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 196 ---------------------------------RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred ---------------------------------cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 111223345667888887 88999999999999999986 468889
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE-ecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1352 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1352 ~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~-~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
+..-..++.++...|+|++|++|..-+.+..||++.++++.. +++..+.|++|..||.+.+++++|-|..|+|+|++++
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 988889999999999999999999999999999999999987 7888999999999999999999999999999999998
Q ss_pred eeEEEEe
Q psy4869 1431 ERIVTLH 1437 (2435)
Q Consensus 1431 ~~l~~~~ 1437 (2435)
+.+.+.+
T Consensus 323 kll~kvY 329 (412)
T KOG3881|consen 323 KLLHKVY 329 (412)
T ss_pred hhhhhhh
Confidence 8877665
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-10 Score=138.25 Aligned_cols=279 Identities=16% Similarity=0.210 Sum_probs=176.4
Q ss_pred CceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEE-------e---CCCeEEEEEcc
Q psy4869 886 SEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG-------T---KDGRLLIVDIG 955 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg-------~---~dg~V~vwd~~ 955 (2435)
...+..++|++|+++|...+..|.|++...+..+...... ...++.|+|-|.+|..= . ..-.+.+|+++
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred CcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 3467789999999999999999999999988655555545 77889999999988751 1 12345566666
Q ss_pred CCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeecc
Q psy4869 956 AGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1035 (2435)
Q Consensus 956 sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1035 (2435)
++..+..+....+.-|+..|+.|
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~d--------------------------------------------------------- 136 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSID--------------------------------------------------------- 136 (566)
T ss_pred cceehhheehhhhcCcccccccc---------------------------------------------------------
Confidence 55444444433333344444444
Q ss_pred ccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCC--CEEEE-----EECCCcEEE
Q psy4869 1036 TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDS--TLIAT-----GSGDRTVKV 1108 (2435)
Q Consensus 1036 ~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg--~~L~S-----gs~Dg~I~v 1108 (2435)
..+.|- ...+.+.+|+..+.+.+... -|...|..+.++|.+ ..+++ .+.-..|+|
T Consensus 137 ----------------Esl~ar-lv~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri 198 (566)
T KOG2315|consen 137 ----------------ESLAAR-LVSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRI 198 (566)
T ss_pred ----------------hhhhhh-hhcceEEEEecCCccceeee-eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEE
Confidence 332221 11345666665553322222 256677777887753 33442 466678999
Q ss_pred EEccCCceeEEEe---ccCCCEEEEEEccCCCE-EE--EEeCC---------CcEEEEeCCCcceeEEEEEEEeeccccc
Q psy4869 1109 WGLDYGDCHKSLL---AHEDSVTGVTFVPKTHY-FF--TTSKD---------GRVKQWDADNFERIVTLHFFISLYGHKL 1173 (2435)
Q Consensus 1109 Wd~~t~~~~~~l~---~h~~~V~~v~fsp~~~~-l~--s~s~D---------g~V~iwD~~~~~~~~~~~~~~~~~~h~~ 1173 (2435)
|..........+. -....--.+.|.+.+.- |+ +..-| ..+++++++.......+ ...+
T Consensus 199 ~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-------~k~G 271 (566)
T KOG2315|consen 199 YKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-------LKEG 271 (566)
T ss_pred eccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-------CCCC
Confidence 9876332222111 12223345677775552 22 22223 35888887743333332 3589
Q ss_pred CeEEEEEeCCCCEEEE--EeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEEC---CCcEEEEECCCCce
Q psy4869 1174 PVLSLDMSYDSTLIAT--GSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK---DGRVKQWDADNFER 1248 (2435)
Q Consensus 1174 ~V~~l~~s~dg~~l~s--gs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~---Dg~I~vwD~~~~~~ 1248 (2435)
+|.++.|+++++.+++ |-+--.+.|||++ ++.+..+ ..++=+++-|+|.|++|+.+|. -|.+.+||+.+.+.
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL 348 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence 9999999999987766 4577889999998 6666555 5677889999999999999884 45677777666544
Q ss_pred EE
Q psy4869 1249 IV 1250 (2435)
Q Consensus 1249 v~ 1250 (2435)
+.
T Consensus 349 i~ 350 (566)
T KOG2315|consen 349 IA 350 (566)
T ss_pred cc
Confidence 33
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-10 Score=152.64 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=166.7
Q ss_pred CeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC---CCeEEEEECCCCceEEEEeccCccccccCcccCCC
Q psy4869 384 RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST---DQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460 (2435)
Q Consensus 384 g~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~---Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~ 460 (2435)
..|.+||..+... ..+..+...+...+|+|||+.|+..+. +..|++||+.+|+... +...........|+|++.
T Consensus 179 ~~l~~~d~dg~~~--~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ--FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC--EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCC
Confidence 4788888765432 233456678999999999999887653 3579999998886432 222223345678999998
Q ss_pred eEEEEEeCCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC-C--eEEEEECCCCcEEEEEecCCCCEE
Q psy4869 461 LLIASGSDDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID-N--DIKMWDLRTNSVVQKLRGHSDTVT 535 (2435)
Q Consensus 461 ~llasgs~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d-g--~V~lwD~~s~~~v~~l~~h~~~V~ 535 (2435)
.++++.+.++ .|.+||+.+++..........+....|+|||+.|+..+.+ | .|+++|+.+++. ..+..+.....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCcc
Confidence 8887766665 5888999887665544555567889999999998877654 3 466667777654 34444445567
Q ss_pred EEEEcCCCCEEEEEECC---CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCe---EEEEE
Q psy4869 536 GLSLSPDGSYILSNAMD---NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKC---VYIWD 609 (2435)
Q Consensus 536 ~i~~spdg~~las~s~D---g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~---V~iwd 609 (2435)
...|+|||++|+..+.+ ..|.+||+... . ...+.... ......|+|||++|+..+.++. +.+++
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g----~-~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATG----G-VQVLTDTF-----LDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCC----C-eEEeCCCC-----CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 88999999999876643 35788898642 2 22222211 1235689999999999887764 66777
Q ss_pred CCCCcEEEEecCCCCCeeEEEEcCC
Q psy4869 610 TTTRRIAYKLPGHNGSVNDVQFHPK 634 (2435)
Q Consensus 610 ~~s~~~~~~l~~h~~~V~~l~fspd 634 (2435)
+ +|+....+.+|.+.+...+|+|-
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCCC
Confidence 7 56666778889999999999974
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-11 Score=144.04 Aligned_cols=291 Identities=16% Similarity=0.151 Sum_probs=206.6
Q ss_pred cCCcCEEEEEEcCCCCEE-EEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcce
Q psy4869 1080 GHKLPVLSLDMSYDSTLI-ATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1158 (2435)
Q Consensus 1080 ~h~~~V~sl~~spdg~~L-~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~ 1158 (2435)
.|...-+.|..+|||+++ ++|..--.|++||+........-.-....|.-.-.+.|-..++.-..|..|-+......-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 477788899999999875 5677788999999976543322211223444444444444455555566665543221110
Q ss_pred eEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcE
Q psy4869 1159 IVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRV 1238 (2435)
Q Consensus 1159 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I 1238 (2435)
... -...-.+++++.-..-|+.++....|+-++++.|..+.-+....+.+++|..++...+|++|+.||.|
T Consensus 129 ~~R---------IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 129 RTR---------IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred eee---------cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence 011 11223456666444445556666779999999999999898888999999999999999999999999
Q ss_pred EEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEE
Q psy4869 1239 KQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1318 (2435)
Q Consensus 1239 ~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1318 (2435)
.+||.|....+..+.....+-.. ........+.
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~-----------------------------------------------pg~~~~~svT 232 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSH-----------------------------------------------PGGDAAPSVT 232 (703)
T ss_pred EEecchhhhhheeeecccccCCC-----------------------------------------------ccccccCcce
Confidence 99999998887776543321000 0011134588
Q ss_pred EEEecCCcceeEEeecCCeEEEEEcccceEEEEec-CCCCCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCceEEEec
Q psy4869 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMSYD--STLIATGSGDRTVKVWGLDYGDCHKSLL 1395 (2435)
Q Consensus 1319 ~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~-~h~~~V~~la~spd--g~~L~sGg~Dg~V~iwdl~~gk~~~~~~ 1395 (2435)
++.|+-||=.+++|+.+|.+.|||+...+++..-. +..-+|..+.|.+. .+.|++. +...++|||-.+|+....+.
T Consensus 233 al~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 233 ALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE 311 (703)
T ss_pred EEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc
Confidence 99999999999999999999999999988766554 56678999999764 3455544 55789999999999988876
Q ss_pred ccccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1396 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1396 ~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
... .++.+++-|++.+|+++-.++.+..+=+.
T Consensus 312 pt~-~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 312 PTS-DLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ccC-CcCceeeecCCceEEEecCCCcceeEEcc
Confidence 554 49999999999999999888766555444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=159.03 Aligned_cols=221 Identities=16% Similarity=0.211 Sum_probs=157.7
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCC---CeEEEEecCCcee-eEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEE
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYD---RQIFIWSVYGECE-NIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAV 431 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~D---g~I~iwd~~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~v 431 (2435)
.+..|...+...+|+|||++|+..+.+ ..|++||+.++.. .+..+.+| ...++|+|||++|+.++ .+|.+.|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEE
Confidence 456788889999999999999988754 3699999976532 33333443 34689999999888765 5776554
Q ss_pred --EECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC-cceEeecCcccEEEEEECCCCCEEEEEe
Q psy4869 432 --WDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK-NQAVSMNNTYQVTSVAFNDTAECVLTGG 508 (2435)
Q Consensus 432 --wd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~-~~~~~~~~~~~v~sv~~sp~g~~l~sgs 508 (2435)
||+.+++ ...+..+...+....|+|++..+++++..++...+|++... .....+.+.. .+..|+|+|++|+.++
T Consensus 275 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 275 YVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMIN 351 (429)
T ss_pred EEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEc
Confidence 5666655 45566676677889999999888877777888888886532 2222223322 4578999999999887
Q ss_pred cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEE
Q psy4869 509 IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588 (2435)
Q Consensus 509 ~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~ 588 (2435)
.++ +.+||+.+++.......+ ....+.|+|||++|+.++.++.+.+|++... .++.++.+..|. ..+...+
T Consensus 352 ~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~--~G~~~~~l~~~~----g~~~~p~ 422 (429)
T PRK01742 352 GDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA--DGRFKARLPGSD----GQVKFPA 422 (429)
T ss_pred CCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC--CCCceEEccCCC----CCCCCcc
Confidence 754 666999988764332222 2356789999999999999999998887431 355666676553 2456688
Q ss_pred EcCC
Q psy4869 589 WSVS 592 (2435)
Q Consensus 589 ~spd 592 (2435)
|+|-
T Consensus 423 wsp~ 426 (429)
T PRK01742 423 WSPY 426 (429)
T ss_pred cCCC
Confidence 8874
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-10 Score=128.76 Aligned_cols=236 Identities=16% Similarity=0.248 Sum_probs=170.3
Q ss_pred ceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe---CCCeEEEEEEecCCCEEE-EEeC------CCeEEEEEccC
Q psy4869 887 EVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID---TGSYALSVCFVPGDRHVL-VGTK------DGRLLIVDIGA 956 (2435)
Q Consensus 887 ~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~---~~~~v~~vafspdg~~La-vg~~------dg~V~vwd~~s 956 (2435)
+...++|+-|-.-+++|.+...+||+.+........+ .+..+..+-| --++|+ +|+. -.+|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 3445999999999999999999999988754432222 3333323333 235555 4443 36899999655
Q ss_pred CceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 957 GEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1036 (2435)
Q Consensus 957 g~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (2435)
...+.++. -..+|.+|.+.++ ++++.- .+.|.||.+.... +.+...+ +
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~------------riVvvl-~~~I~VytF~~n~----------------k~l~~~e--t 132 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD------------RIVVVL-ENKIYVYTFPDNP----------------KLLHVIE--T 132 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC------------eEEEEe-cCeEEEEEcCCCh----------------hheeeee--c
Confidence 55555543 2458999999887 455544 4899999975211 0111111 1
Q ss_pred cccCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCeE--EEEEecCCcCEEEEEEcCCCCEEEEEECCCc-EEEEEcc
Q psy4869 1037 LKLEEQVLCARVSPDSKLLAVSLL-DTTVKIFFLDTFKF--FISLYGHKLPVLSLDMSYDSTLIATGSGDRT-VKVWGLD 1112 (2435)
Q Consensus 1037 ~~~~~~v~~l~~spdg~~Lavg~~-dg~V~i~d~~~~~~--~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~-I~vWd~~ 1112 (2435)
...+.+..++.-..+..+||.-+. -|.|.|.|+...+. -..+..|...|.|++.+.+|.++|+++..|+ |||||..
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 122344555555555666766554 49999999876554 4678899999999999999999999999997 6899999
Q ss_pred CCceeEEEec--cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q psy4869 1113 YGDCHKSLLA--HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1156 (2435)
Q Consensus 1113 t~~~~~~l~~--h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~ 1156 (2435)
+|..+..++. ....|.+++|+|+..+|++++..|+|++|.++..
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999874 4568999999999999999999999999988753
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-10 Score=131.83 Aligned_cols=274 Identities=16% Similarity=0.236 Sum_probs=171.5
Q ss_pred cEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccc-cccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCcc
Q psy4869 161 VITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMA-AHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDID 239 (2435)
Q Consensus 161 ~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~-~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~ 239 (2435)
.+..++|++. -..++.+..|-.|++||-.. .+...++ .....|.+++|-|.+..-++.+.-+-|.+|.........
T Consensus 100 dlr~~aWhqH--~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 100 DLRGVAWHQH--IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN 176 (445)
T ss_pred ceeeEeechh--hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc
Confidence 5677899752 23478889999999999877 4444443 334679999999976555555555778999876431100
Q ss_pred ccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhh
Q psy4869 240 TEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRS 319 (2435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (2435)
. . ...++
T Consensus 177 r------------------------------------------~--------~~~~s----------------------- 183 (445)
T KOG2139|consen 177 R------------------------------------------N--------IRMMS----------------------- 183 (445)
T ss_pred c------------------------------------------c--------ccccc-----------------------
Confidence 0 0 00000
Q ss_pred cccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeC-CCeEEEEecCCceeeE
Q psy4869 320 MKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGY-DRQIFIWSVYGECENI 398 (2435)
Q Consensus 320 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~-Dg~I~iwd~~~~~~~~ 398 (2435)
..-..+....|| .+|++++|++||..+++++. |..|+|||...+....
T Consensus 184 ------------------------------~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 184 ------------------------------THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred ------------------------------ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc
Confidence 000011234467 78999999999999999985 5689999998654332
Q ss_pred EEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCC
Q psy4869 399 GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR 478 (2435)
Q Consensus 399 ~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~ 478 (2435)
.. ..--+.+.-+.|+|||.+|+++.-|+..++|+...........-....|....|.|.|.+++.+.+..-.
T Consensus 233 L~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~------- 304 (445)
T KOG2139|consen 233 LI-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR------- 304 (445)
T ss_pred cc-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce-------
Confidence 22 2335788899999999999999999999999654332222222233478888899999888887765432
Q ss_pred CCcceEeecCcccEEEEEECCCCCEEE-EEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECC-----
Q psy4869 479 KKNQAVSMNNTYQVTSVAFNDTAECVL-TGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMD----- 552 (2435)
Q Consensus 479 ~~~~~~~~~~~~~v~sv~~sp~g~~l~-sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~D----- 552 (2435)
+.++.|......+. .++.....-+-|+..-....--+--.+++.+++|.|.|.+||+.=..
T Consensus 305 -------------lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~ 371 (445)
T KOG2139|consen 305 -------------LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVL 371 (445)
T ss_pred -------------EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhh
Confidence 33444432221111 22222233333443211110011124678999999999999985432
Q ss_pred ---CcEEEEEcCC
Q psy4869 553 ---NTVRIWDIRP 562 (2435)
Q Consensus 553 ---g~I~lWdl~~ 562 (2435)
..|.+||.+.
T Consensus 372 ~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 372 LCKLHISRFDTRK 384 (445)
T ss_pred hhhhhhhhhcccc
Confidence 3467788774
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-11 Score=137.91 Aligned_cols=247 Identities=17% Similarity=0.362 Sum_probs=175.4
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce----eeEEEeeCC------------CCCeeEEEEccCC--CEEEEE
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC----ENIGVMSGH------------TGAVMDLKFSTDG--CHIFTC 423 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~----~~~~~l~~h------------~~~V~~l~~s~dg--~~L~s~ 423 (2435)
.+-|.++.|...|.+||+|+.+|+|.++.-.... .....++.| ...|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568899999999999999999999999643222 133344444 3578999999865 467888
Q ss_pred eCCCeEEEEECCCCce-----------------------------------EEEE-eccCccccccCcccCCCeEEEEEe
Q psy4869 424 STDQTLAVWDLEKGQR-----------------------------------IKKM-KGHSTFVNSCDPVRRGQLLIASGS 467 (2435)
Q Consensus 424 s~Dg~I~vwd~~tg~~-----------------------------------v~~l-~~h~~~v~sv~~~~~~~~llasgs 467 (2435)
..|++|++|.+..... .+.+ .+|.-.|+++.+..+...++ ..
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l--SA 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL--SA 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe--ec
Confidence 8999999998753210 0011 25777788888888775554 46
Q ss_pred CCCeEEEEeCCCCcceEee---c-C-----cccEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEE----EEEe-----
Q psy4869 468 DDCTVKVWDPRKKNQAVSM---N-N-----TYQVTSVAFNDT-AECVLTGGIDNDIKMWDLRTNSVV----QKLR----- 528 (2435)
Q Consensus 468 ~Dg~I~vwD~~~~~~~~~~---~-~-----~~~v~sv~~sp~-g~~l~sgs~dg~V~lwD~~s~~~v----~~l~----- 528 (2435)
+|-.|.+|.+.-......+ . + ..-|++..|+|. .+.++-.+..|.|+|.|+|...+. +.++
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 7899999998754433322 1 1 224788999995 567888889999999999953221 1111
Q ss_pred -------cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccc-----------cCeEEEEEc
Q psy4869 529 -------GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE-----------KNLLRCAWS 590 (2435)
Q Consensus 529 -------~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~-----------~~i~~v~~s 590 (2435)
+--..|..+.|+++|++|++-.. -+|++||+.+ ..+++.++.-|..... ..-..|+|+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm---e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM---EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc---cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 12246888999999999998543 6899999964 4566777766642211 112579999
Q ss_pred CCCCEEEEecCCCeEEEEECCCCc
Q psy4869 591 VSGLYVTAGSADKCVYIWDTTTRR 614 (2435)
Q Consensus 591 pdg~~Lasgs~Dg~V~iwd~~s~~ 614 (2435)
-++.++++|+..+.+++|+...|.
T Consensus 339 g~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 339 GNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CCcceEecccccceEEEecCCCCc
Confidence 999999999999999999976653
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-11 Score=143.44 Aligned_cols=285 Identities=17% Similarity=0.218 Sum_probs=206.6
Q ss_pred EEEeCCCeEEEEEEecCCCEEE-EEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCC
Q psy4869 920 RTIDTGSYALSVCFVPGDRHVL-VGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGD 998 (2435)
Q Consensus 920 ~~l~~~~~v~~vafspdg~~La-vg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~D 998 (2435)
..+..+..+..|..+|||+||+ +|.+.-.|.+||+.+..+...-.... .+..+....|.+ ..++.-..|
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDa-e~V~feiLsDD~---------SK~v~L~~D 115 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDA-EVVDFEILSDDY---------SKSVFLQND 115 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccc-cceeEEEeccch---------hhheEeecC
Confidence 3445667778889999999875 68899999999998776654332222 232222222221 234444566
Q ss_pred CeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEE
Q psy4869 999 KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL 1078 (2435)
Q Consensus 999 g~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l 1078 (2435)
..|-+...-+. +. ....+..-..++++.-.--|++++....|+-++++.|..+..+
T Consensus 116 R~IefHak~G~----------------hy--------~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~ 171 (703)
T KOG2321|consen 116 RTIEFHAKYGR----------------HY--------RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF 171 (703)
T ss_pred ceeeehhhcCe----------------ee--------eeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccc
Confidence 66655542110 00 1122333445566654444555555778999999999999999
Q ss_pred ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec------cCC-----CEEEEEEccCCCEEEEEeCCCc
Q psy4869 1079 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA------HED-----SVTGVTFVPKTHYFFTTSKDGR 1147 (2435)
Q Consensus 1079 ~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~------h~~-----~V~~v~fsp~~~~l~s~s~Dg~ 1147 (2435)
....+.++++..++...+|++|+.+|.|-.||.+....+..+.. |.. .|+++.|+.+|-.+++|..+|.
T Consensus 172 ~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 172 ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence 98889999999999999999999999999999987766665542 333 4999999988999999999999
Q ss_pred EEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCC--CCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeC
Q psy4869 1148 VKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD--STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225 (2435)
Q Consensus 1148 V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~d--g~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd 1225 (2435)
|.+||++..+.+..-. .....+|..+.|.+. +..+++. ....++|||-.+|+....+. ....++.+++.|+
T Consensus 252 v~iyDLRa~~pl~~kd-----h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~ 324 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKD-----HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVPG 324 (703)
T ss_pred EEEEEcccCCceeecc-----cCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeecC
Confidence 9999999987765543 345678999999875 3444443 44678999999999887774 4455999999999
Q ss_pred CCEEEEEECCCcEEEEECCC
Q psy4869 1226 THYFFTTSKDGRVKQWDADN 1245 (2435)
Q Consensus 1226 ~~~lvsgs~Dg~I~vwD~~~ 1245 (2435)
+.+++++-.+..+..|-+..
T Consensus 325 sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CceEEEecCCCcceeEEccc
Confidence 99999999888888776554
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-09 Score=125.47 Aligned_cols=238 Identities=20% Similarity=0.235 Sum_probs=167.5
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEE-EEECC------CcEEEEEccCCc
Q psy4869 1043 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIA-TGSGD------RTVKVWGLDYGD 1115 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~-Sgs~D------g~I~vWd~~t~~ 1115 (2435)
...++|..|..-+++|..+| .+||+.+..+.....+.+.+.+.-+...-..++|+ +|+.+ ..|.|||=...+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 34489999999999999666 99999987665444443333322222222334444 44443 479999966666
Q ss_pred eeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CcceeEEEEEEEeecccccCeEEEEEeCCCCEEEE-EeCC
Q psy4869 1116 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD-NFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIAT-GSGD 1193 (2435)
Q Consensus 1116 ~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~-~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s-gs~D 1193 (2435)
++.++. ...+|.+|.+.++ .|++. ..+.|.+|... +.+.+..+. + .....++.+++-..+...||. |-.-
T Consensus 87 ~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~e---t-~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIE---T-RSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeee---c-ccCCCceEeecCCCCceEEEcCCCcc
Confidence 776665 5678999999853 34443 35789999987 444444443 2 122333444444434445554 3456
Q ss_pred CcEEEEEccCCce--eeEeeccCCCEEEEEEeeCCCEEEEEECCCc-EEEEECCCCceEEEEeeCCcccccCceEEEEEE
Q psy4869 1194 RTVKVWGLDYGDC--HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR-VKQWDADNFERIVTLHFNPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1194 g~V~iwd~~t~~~--~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~-I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~ 1270 (2435)
|.|+|-|+...+. ...+.+|...|.|+++..+|..++++|..|+ |++||..++..+..+.-.
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG--------------- 223 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG--------------- 223 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC---------------
Confidence 9999999987665 3678899999999999999999999999997 689999988877655311
Q ss_pred CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEccc
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT 1345 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~ 1345 (2435)
.....|.|++||||+.+||++|..|+|+||.+..
T Consensus 224 -----------------------------------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 224 -----------------------------------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred -----------------------------------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 1135689999999999999999999999999864
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.7e-11 Score=136.99 Aligned_cols=244 Identities=17% Similarity=0.250 Sum_probs=182.7
Q ss_pred CCeeEEEEccCC--CEEEEEeCCCeEEEEECCCCceEEEE------eccCccccccCcccCCCeEEEEEeCCCeEEEEeC
Q psy4869 406 GAVMDLKFSTDG--CHIFTCSTDQTLAVWDLEKGQRIKKM------KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477 (2435)
Q Consensus 406 ~~V~~l~~s~dg--~~L~s~s~Dg~I~vwd~~tg~~v~~l------~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~ 477 (2435)
..|..++|.-|+ +.|..++.|..+..+.+........+ ......|..+.. .+..+++|-.+|.+.+|..
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCCEEEEEecCCcEEEEec
Confidence 456666665544 34555556666777766554433322 223344444432 2346778889999999998
Q ss_pred CCCc----ceEeecCcccEEEEEECCCCCEEE-EEecC--CeEEEEECCCCcEEEEEecCC---------CCEEEEEEcC
Q psy4869 478 RKKN----QAVSMNNTYQVTSVAFNDTAECVL-TGGID--NDIKMWDLRTNSVVQKLRGHS---------DTVTGLSLSP 541 (2435)
Q Consensus 478 ~~~~----~~~~~~~~~~v~sv~~sp~g~~l~-sgs~d--g~V~lwD~~s~~~v~~l~~h~---------~~V~~i~~sp 541 (2435)
+.+. .+..+....++..|.-++...+|+ +|+.. ..+.|||+...+.+..-+.-. -.++++.|-+
T Consensus 133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred cCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 7433 333444556777888877666555 48888 889999999886655443211 2468899998
Q ss_pred C--CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEE-
Q psy4869 542 D--GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYK- 618 (2435)
Q Consensus 542 d--g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~- 618 (2435)
. ...||+++.-+.+|+||.+. +.+++..+... +..+.++...|+|++|++|..-|.+..||.+.++++..
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~---qRRPV~~fd~~----E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRH---QRRPVAQFDFL----ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred CCCCceEEEEecceeEEEecCcc---cCcceeEeccc----cCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 7 88999999999999999984 67888887654 34789999999999999999999999999999999887
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccC
Q psy4869 619 LPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKA 659 (2435)
Q Consensus 619 l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~ 659 (2435)
+++-.+.|++|..||..++|+++|-|..+||+|+..+....
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 88999999999999999999999999999999998544433
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=150.80 Aligned_cols=235 Identities=16% Similarity=0.128 Sum_probs=163.3
Q ss_pred CeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEeccCccccccCcccCCC
Q psy4869 384 RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD---QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460 (2435)
Q Consensus 384 g~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D---g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~ 460 (2435)
..|.+||..+.. ...+..|...+...+|+|||+.|+.++.+ ..|++||+.+++... +..+........|+|++.
T Consensus 184 ~~l~i~D~~g~~--~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYN--PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCC--ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCC
Confidence 468889876532 23455677889999999999999988743 469999998876533 333344455788999998
Q ss_pred eEEEEEeCCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEec-CCe--EEEEECCCCcEEEEEecCCCCEE
Q psy4869 461 LLIASGSDDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI-DND--IKMWDLRTNSVVQKLRGHSDTVT 535 (2435)
Q Consensus 461 ~llasgs~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~-dg~--V~lwD~~s~~~v~~l~~h~~~V~ 535 (2435)
.++++.+.++ .|.+||+.+++......+.......+|+|||++|+.++. +|. |+++|+.+++.. .+..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887777666 599999988765443344444567899999999887764 444 777788777643 3323334455
Q ss_pred EEEEcCCCCEEEEEECCC---cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC---CeEEEEE
Q psy4869 536 GLSLSPDGSYILSNAMDN---TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD---KCVYIWD 609 (2435)
Q Consensus 536 ~i~~spdg~~las~s~Dg---~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D---g~V~iwd 609 (2435)
.++|+|||++|+..+.++ .|.+||+.. ++.. .+.... ......|+|||++|+..+.+ +.|.+++
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~----g~~~-~Lt~~~-----~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLST----GSVR-TLTPGS-----LDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCC----CCeE-ECCCCC-----CCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 789999999998765443 689999864 2222 222111 12346899999998877653 4688888
Q ss_pred CCCCcEEEEecCCCCCeeEEEEcC
Q psy4869 610 TTTRRIAYKLPGHNGSVNDVQFHP 633 (2435)
Q Consensus 610 ~~s~~~~~~l~~h~~~V~~l~fsp 633 (2435)
.. +.....+..+.+.+...+|+|
T Consensus 410 ~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-CCceEEcccCCCCCCCCccCC
Confidence 84 455566666677788888886
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-10 Score=129.86 Aligned_cols=287 Identities=14% Similarity=0.182 Sum_probs=188.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee-CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC----C
Q psy4869 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS-GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK----G 437 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~-~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t----g 437 (2435)
-.+..++|++.-.-+|++..|..||+||-..... ..++ .....|.+++|-|.+..-++.+..+-|.+|.... +
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~p--t~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP--TKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCC--ceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc
Confidence 3456789999777899999999999999765221 2222 2346899999999766555555567789997642 1
Q ss_pred ce----------EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEE
Q psy4869 438 QR----------IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLT 506 (2435)
Q Consensus 438 ~~----------v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~s 506 (2435)
.. +-..++| ..|.++.|.+++..++-+.-.|..|+|||..++..+... ...+.+.-+.|+|||.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 11 1222345 678999999998666655566789999999988876665 56677889999999999999
Q ss_pred EecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCC--CCC-----CC-ceE---EEEe
Q psy4869 507 GGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILS-NAMDNTVRIWDIRP--YVP-----GE-RCV---KVMS 574 (2435)
Q Consensus 507 gs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las-~s~Dg~I~lWdl~~--~~~-----~~-~~v---~~~~ 574 (2435)
+..|+..++|..........+....+.|..-+|+|+|++|+- ++.... ||.+.- ... .. +.+ ..+.
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccch
Confidence 999999999955443333333334559999999999998764 443333 443321 000 00 011 1111
Q ss_pred -----CcccccccCeEEEEEcCCCCEEEEecCCC--------eEEEEECCCCcEEEEe-cC--CCCCeeEEEEcC---CC
Q psy4869 575 -----GHQHNFEKNLLRCAWSVSGLYVTAGSADK--------CVYIWDTTTRRIAYKL-PG--HNGSVNDVQFHP---KE 635 (2435)
Q Consensus 575 -----~h~~~~~~~i~~v~~spdg~~Lasgs~Dg--------~V~iwd~~s~~~~~~l-~~--h~~~V~~l~fsp---d~ 635 (2435)
..+....++..+++|.|.|.+|++.-..+ .|.+||.+.--++... -| .......++|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 01111234567899999999999864433 4667777644332221 11 112255677776 45
Q ss_pred CEEEEEECCCcEEEecCCC
Q psy4869 636 PIIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 636 ~~Lasgs~Dg~I~vWd~~~ 654 (2435)
++|..+=+-|.+.-|.+..
T Consensus 414 ~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred cEEEEEeccCceEeeeeEE
Confidence 6777777778888777653
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.1e-11 Score=134.61 Aligned_cols=334 Identities=19% Similarity=0.329 Sum_probs=199.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCe-----eEEEEecCC------------CcEEEEEEeecCCCcEEEEE
Q psy4869 117 KSAITVIQYDPLGHRLATGSKDTDIVLWDVVAEC-----GLHRLSGHK------------GVITDIRFMSQPGHHFVVSS 179 (2435)
Q Consensus 117 ~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~-----~~~~l~gH~------------~~V~~v~~~~~~~~~~l~S~ 179 (2435)
.+-|.++.|+.+|.+||||..+|.|.++.-.... ....++.|. ..|..++|.++.+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678999999999999999999999999754433 123344554 35889999988777788888
Q ss_pred eCCCcEEEEeccCCcccc-----------------------------------cc-ccccceEEEEEEEeCCCeEEEeeC
Q psy4869 180 AKDTFVKIWDADTGDCFK-----------------------------------TM-AAHLTEVWGVCVMREDSYLISGSN 223 (2435)
Q Consensus 180 s~Dg~I~iWd~~tg~~~~-----------------------------------~~-~~h~~~V~~l~~~p~~~~l~s~s~ 223 (2435)
..|.+|++|.+....... .+ .+|.--|+++.++.|.+.++++ +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999999875332111 01 2344444555555444444432 2
Q ss_pred CCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccC
Q psy4869 224 DAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNID 303 (2435)
Q Consensus 224 Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (2435)
|=.|-+|+++-
T Consensus 184 dLRINLWnlei--------------------------------------------------------------------- 194 (433)
T KOG1354|consen 184 DLRINLWNLEI--------------------------------------------------------------------- 194 (433)
T ss_pred ceeeeeccccc---------------------------------------------------------------------
Confidence 34444454431
Q ss_pred ccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCC-CCEEEEEeC
Q psy4869 304 DFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPD-GQYIASSGY 382 (2435)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspd-g~~Lasgs~ 382 (2435)
.++...|.|.+.. .+..-..-|++..|+|. .+.++-.+.
T Consensus 195 -------------------~d~sFnIVDIKP~---------------------nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 195 -------------------IDQSFNIVDIKPA---------------------NMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred -------------------cCCceeEEEcccc---------------------CHHHHHHHHhhhccCHhHccEEEEecC
Confidence 1222233333221 01122345778889995 567888889
Q ss_pred CCeEEEEecCCcee-----eE----------EEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC-CCCceEEEEecc
Q psy4869 383 DRQIFIWSVYGECE-----NI----------GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL-EKGQRIKKMKGH 446 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~-----~~----------~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~-~tg~~v~~l~~h 446 (2435)
.|.|++.|++.... .+ ..+..--..|.++.|+++|+++++-.. -+|++||+ ...+++..+.-|
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 99999999973211 00 111222357899999999999988643 58999999 456778787776
Q ss_pred CccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE-E
Q psy4869 447 STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVV-Q 525 (2435)
Q Consensus 447 ~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v-~ 525 (2435)
..--..++-.-.+ | .||| -..++|+.++.++++|+....+++|++..|... .
T Consensus 314 ~~lr~kLc~lYEn---------D---~Ifd---------------KFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 314 EYLRSKLCSLYEN---------D---AIFD---------------KFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred HhHHHHHHHHhhc---------c---chhh---------------eeEEEEcCCcceEecccccceEEEecCCCCcceee
Confidence 5322111110010 0 1111 235788899999999999999999997766432 2
Q ss_pred EEecCCCC--EEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC
Q psy4869 526 KLRGHSDT--VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK 603 (2435)
Q Consensus 526 ~l~~h~~~--V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg 603 (2435)
++...... ...+ ..-+.+.+++......+|- ........++..+|+|..+.+|.+..++
T Consensus 367 tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~v----------------d~ldf~kkilh~aWhp~en~ia~aatnn 427 (433)
T KOG1354|consen 367 TLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISV----------------DALDFRKKILHTAWHPKENSIAVAATNN 427 (433)
T ss_pred cccccccCCccccc---ccceeeecCCCcccccccc----------------chhhhhhHHHhhccCCccceeeeeecCc
Confidence 33222211 1111 1122333344333322211 1111223567789999999888876554
Q ss_pred eEEEE
Q psy4869 604 CVYIW 608 (2435)
Q Consensus 604 ~V~iw 608 (2435)
++||
T Consensus 428 -lyif 431 (433)
T KOG1354|consen 428 -LYIF 431 (433)
T ss_pred -eEEe
Confidence 4444
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-09 Score=128.38 Aligned_cols=280 Identities=16% Similarity=0.239 Sum_probs=197.1
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCc--------------eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE--------------CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD 426 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~--------------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 426 (2435)
.+....|+.|+....|||.||.||.+++..+... ......+.||++.|.-+.|+.+.+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456789999999999999999999999976421 11224578999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEEe--ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCE
Q psy4869 427 QTLAVWDLEKGQRIKKMK--GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAEC 503 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~--~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~ 503 (2435)
|.|.+|-+-.|.+...+. .....|.++.|..+|..+ +..-.||.|.+=.+.... +.... .......+.|++|.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeeccce-ecchhcchheccceeecccHHH
Confidence 999999998887654442 235667889998888554 445667766654443221 11111 1123457889999999
Q ss_pred EEEEecCCeEEEEECCCC-------cEEEE----EecCCCCEEEEEEc--------CCCCEEEEEECCCcEEEEEcCCCC
Q psy4869 504 VLTGGIDNDIKMWDLRTN-------SVVQK----LRGHSDTVTGLSLS--------PDGSYILSNAMDNTVRIWDIRPYV 564 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s~-------~~v~~----l~~h~~~V~~i~~s--------pdg~~las~s~Dg~I~lWdl~~~~ 564 (2435)
++.+-..|.+++||.... .+... +......|..+.|. ||...|+.+-..|.+.|-.-.+
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN-- 248 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN-- 248 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC--
Confidence 999999999999997642 11111 11111235566664 4778899999999988854332
Q ss_pred CCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC---------eEEEEECCCCcEEEEecCCCCCeeEEEEcCCC
Q psy4869 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK---------CVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKE 635 (2435)
Q Consensus 565 ~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg---------~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~ 635 (2435)
...++..-.+. .+....|+++|..|+.++.|. .|.+|.. -|+.+..++-....|++++|-..|
T Consensus 249 -D~~Pvv~dtgm------~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 249 -DPEPVVVDTGM------KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTG 320 (1189)
T ss_pred -CCCCeEEeccc------EeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCc
Confidence 23333333332 567889999999999998643 4555543 467778888888999999998887
Q ss_pred CEEEEEECCCcEEEecCC
Q psy4869 636 PIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 636 ~~Lasgs~Dg~I~vWd~~ 653 (2435)
-.+|.+ .|+.|++-++.
T Consensus 321 LriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 321 LRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred eEEEEE-ecceEEEEeec
Confidence 666554 58888886664
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.4e-08 Score=133.29 Aligned_cols=429 Identities=17% Similarity=0.186 Sum_probs=261.7
Q ss_pred CCeEEEEEEecCCCEEEEEeCCCeEEEE----EccCCc--eeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCC
Q psy4869 925 GSYALSVCFVPGDRHVLVGTKDGRLLIV----DIGAGE--ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGD 998 (2435)
Q Consensus 925 ~~~v~~vafspdg~~Lavg~~dg~V~vw----d~~sg~--~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~D 998 (2435)
...+.++.|.++...|+++..+|.|.++ |..+.. ++..+ ...|.+++|+||+ ..++...++
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~----------Ella~vT~~ 141 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDE----------ELLALVTGE 141 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCc----------CEEEEEeCC
Confidence 4678899999999999999999999999 544433 33333 4589999999997 688888888
Q ss_pred CeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCeE
Q psy4869 999 KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD----SKLLAVSLLDTTVKIFFLDTFKF 1074 (2435)
Q Consensus 999 g~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd----g~~Lavg~~dg~V~i~d~~~~~~ 1074 (2435)
|+|.+-+-+...+ .-..+.++ .+.+-+| +..+=.-|.-..+|.
T Consensus 142 ~~l~~mt~~fd~i--------------------------------~E~~l~~~~~~~~~~VsVG-WGkKeTQF~Gs~gK~ 188 (928)
T PF04762_consen 142 GNLLLMTRDFDPI--------------------------------SEVPLDSDDFGESKHVSVG-WGKKETQFHGSAGKA 188 (928)
T ss_pred CEEEEEeccceEE--------------------------------EEeecCccccCCCceeeec-cCcccCccCcchhhh
Confidence 9988876431111 01111111 1122222 111100111111111
Q ss_pred --------------EEEEecCCcCEEEEEEcCCCCEEEEEEC---C---CcEEEEEccCCceeEEEeccCCCEEEEEEcc
Q psy4869 1075 --------------FISLYGHKLPVLSLDMSYDSTLIATGSG---D---RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP 1134 (2435)
Q Consensus 1075 --------------~~~l~~h~~~V~sl~~spdg~~L~Sgs~---D---g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp 1134 (2435)
...+. +...-..|+|-.||.++|+.+. . ..|+||+-+ |....+...-.+--..++|.|
T Consensus 189 aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP 266 (928)
T PF04762_consen 189 AARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP 266 (928)
T ss_pred hhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC
Confidence 01122 3445568899999999998764 3 478999965 665555554444456889999
Q ss_pred CCCEEEEEeC---CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc--eeeE
Q psy4869 1135 KTHYFFTTSK---DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD--CHKS 1209 (2435)
Q Consensus 1135 ~~~~l~s~s~---Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~--~~~~ 1209 (2435)
.|++|++.-. ...|.+|.-+ +-+-..+. .........|..+.|+.|+..|++.-.|. |.+|-..+.. ..+.
T Consensus 267 sG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~--l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 267 SGNLIASSQRLPDRHDVVFFERN-GLRHGEFT--LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE 342 (928)
T ss_pred CCCEEEEEEEcCCCcEEEEEecC-CcEeeeEe--cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence 9999888764 3456677633 33333332 22234567899999999999999977655 9999988765 1222
Q ss_pred ee-ccCCCEEEEEEee-CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccc
Q psy4869 1210 LL-AHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNR 1287 (2435)
Q Consensus 1210 ~~-~h~~~V~~i~~sp-d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~ 1287 (2435)
+. .....+..+.|+| +...|.....+|.+..++..-. ... .....+...-++..-....+.+-.++..
T Consensus 343 i~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-----v~~-s~~~~~~D~g~vaVIDG~~lllTpf~~a---- 412 (928)
T PF04762_consen 343 IRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-----VSR-SPGSSPNDNGTVAVIDGNKLLLTPFRRA---- 412 (928)
T ss_pred EEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-----EEe-cCCCCccCceEEEEEeCCeEEEeccccc----
Confidence 22 2233455699999 5566777777788877665211 111 1111121222233333445666655422
Q ss_pred cccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceE--------EEEe-------
Q psy4869 1288 EADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF--------FISL------- 1352 (2435)
Q Consensus 1288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~--------i~~~------- 1352 (2435)
..+.|.-.+...+...|.+++|++++..+|+-..||.+.+|.+..... ...+
T Consensus 413 -------------~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (928)
T PF04762_consen 413 -------------VVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDI 479 (928)
T ss_pred -------------CCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccc
Confidence 223344455667788999999999999999999999999999644211 1111
Q ss_pred ---cCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCc---eEEEecccccceEEEEEeeCCCEEEEEeCCCcEE
Q psy4869 1353 ---YGHKLPVLSLDMSYDSTLIATGSGD---RTVKVWGLDYGD---CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1423 (2435)
Q Consensus 1353 ---~~h~~~V~~la~spdg~~L~sGg~D---g~V~iwdl~~gk---~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~ 1423 (2435)
......+..++|..+..+++....+ ..+.++++...+ .+.....-.+.+..+...++...++.-..||.|.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~ 559 (928)
T PF04762_consen 480 SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVF 559 (928)
T ss_pred cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEE
Confidence 1224568899998888877766654 677888775432 2222223345666666666655455556677776
Q ss_pred EEECC
Q psy4869 1424 QWDAD 1428 (2435)
Q Consensus 1424 lWd~~ 1428 (2435)
..+..
T Consensus 560 ~~~~~ 564 (928)
T PF04762_consen 560 QLSSD 564 (928)
T ss_pred EeecC
Confidence 44333
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.9e-10 Score=144.46 Aligned_cols=235 Identities=14% Similarity=0.158 Sum_probs=164.3
Q ss_pred CeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC---CCeEEEEECCCCceEEEEeccCccccccCcccCCC
Q psy4869 384 RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST---DQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460 (2435)
Q Consensus 384 g~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~---Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~ 460 (2435)
..|.+||..+.. ...+..|...+...+|+|||+.|+..+. +..|++||+.+++.. .+..+...+....|+|++.
T Consensus 182 ~~l~~~d~dg~~--~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGAN--VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCC--cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 478888876543 3345678889999999999999888764 468999999888653 4445555677889999998
Q ss_pred eEEEEEeCCCe--EEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEec-C--CeEEEEECCCCcEEEEEecCCCCEE
Q psy4869 461 LLIASGSDDCT--VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI-D--NDIKMWDLRTNSVVQKLRGHSDTVT 535 (2435)
Q Consensus 461 ~llasgs~Dg~--I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~-d--g~V~lwD~~s~~~v~~l~~h~~~V~ 535 (2435)
.++++.+.++. |.+||+.++.......+........|+|||+.|+..+. + ..|+++|+..++. ..+..+.+.+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCccc
Confidence 88888777765 77778887765443344455667899999999887764 3 3688899877654 34444455677
Q ss_pred EEEEcCCCCEEEEEECC---CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC------CeEE
Q psy4869 536 GLSLSPDGSYILSNAMD---NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD------KCVY 606 (2435)
Q Consensus 536 ~i~~spdg~~las~s~D---g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D------g~V~ 606 (2435)
...|+|||++|+..+.+ ..|.+||+.. .....+... ..+....|+|||++|+..+.+ ..|.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-----~~~~~lt~~-----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-----SGERILTSG-----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCC-----CceEeccCC-----CCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 78999999999877653 3577788752 112222211 124567899999998775442 3688
Q ss_pred EEECCCCcEEEEecCCCCCeeEEEEcCC
Q psy4869 607 IWDTTTRRIAYKLPGHNGSVNDVQFHPK 634 (2435)
Q Consensus 607 iwd~~s~~~~~~l~~h~~~V~~l~fspd 634 (2435)
++|+..++. ..+. ..+.+...+|+|-
T Consensus 408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 408 TVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred EEECCCCce-EEcc-CCCCccCcccCCC
Confidence 888866554 3443 3445677788764
|
|
| >cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC) | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-12 Score=162.18 Aligned_cols=41 Identities=20% Similarity=0.436 Sum_probs=37.7
Q ss_pred cceEEEEEEeccCCCCc-ceEEEEccCCCCcCCCceEEEEee
Q psy4869 2355 YIHSVKIIGWGKSSQNE-PYWLCTNSYNQGWGEQGLFKIRRG 2395 (2435)
Q Consensus 2355 ~~Hav~iVGyg~~~~g~-~yWiikNSWG~~WG~~Gy~~i~r~ 2395 (2435)
.+|||+|||||.+++|+ .||+||||||+.||++|||+|.++
T Consensus 358 ~tHAM~ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 358 MTHAMVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CCeEEEEEEEEecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 57999999999877687 599999999999999999999986
|
The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-07 Score=108.62 Aligned_cols=233 Identities=11% Similarity=0.035 Sum_probs=154.5
Q ss_pred CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeec---ccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCe
Q psy4869 924 TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILED---IPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000 (2435)
Q Consensus 924 ~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~---~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~ 1000 (2435)
...+++ ..+.||+.++- ...|.|++||..+..+..- ++....+=...-..|..|..+-....|+.++..+. |+
T Consensus 267 tdYY~R--~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-Gk 342 (668)
T COG4946 267 TDYYPR--NANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GK 342 (668)
T ss_pred hhcccc--ccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-Cc
Confidence 445555 44568887764 3467899999887663221 11110000000001111111111134567777776 55
Q ss_pred EEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCC-cEEEEEcCCCeEEEEEe
Q psy4869 1001 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDT-TVKIFFLDTFKFFISLY 1079 (2435)
Q Consensus 1001 V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg-~V~i~d~~~~~~~~~l~ 1079 (2435)
.-+.+--.+ .+ .....+++|.-..+.-+++-+++|..|| .+.||+.++++.. .+.
T Consensus 343 aFi~~~~~~-----------------~~------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e 398 (668)
T COG4946 343 AFIMRPWDG-----------------YS------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIE 398 (668)
T ss_pred EEEECCCCC-----------------ee------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-Eee
Confidence 555442111 11 1234567788889999999999999998 8999999987754 455
Q ss_pred cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeC----CCcEEEEeCCC
Q psy4869 1080 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK----DGRVKQWDADN 1155 (2435)
Q Consensus 1080 ~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~----Dg~V~iwD~~~ 1155 (2435)
..-+.|.++..+++|+.++.+.....|.+.|+++|.....-+...+-|..+.|+|++++++-+-- ...|+++|+..
T Consensus 399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 56688999999999999999999999999999999876666667788999999999999987644 45699999988
Q ss_pred cceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe
Q psy4869 1156 FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191 (2435)
Q Consensus 1156 ~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 1191 (2435)
++..... ...+.=.+-+|.|++++|+--+
T Consensus 479 ~Kiy~vT-------T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVT-------TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEec-------CCcccccCcccCCCCcEEEEEe
Confidence 6654332 1222334557888998887544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-10 Score=145.43 Aligned_cols=235 Identities=14% Similarity=0.158 Sum_probs=157.6
Q ss_pred CeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEeccCccccccCcccCCC
Q psy4869 384 RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD---QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460 (2435)
Q Consensus 384 g~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D---g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~ 460 (2435)
..|.++|..+.. ...+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +...........|+|++.
T Consensus 176 ~~L~~~D~dG~~--~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQN--AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCC--ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 467777765432 23345677889999999999999887753 359999999887543 333334456788999998
Q ss_pred eEEEEEeCCCeEEEEe--CCCCcceEee-cCcccEEEEEECCCCCEEEEEec-CCeEEEE--ECCCCcEEEEEecCCCCE
Q psy4869 461 LLIASGSDDCTVKVWD--PRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI-DNDIKMW--DLRTNSVVQKLRGHSDTV 534 (2435)
Q Consensus 461 ~llasgs~Dg~I~vwD--~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~-dg~V~lw--D~~s~~~v~~l~~h~~~V 534 (2435)
.++++.+.++...+|. +..+.. ..+ .+........|+|||++|+..+. +|...|| |..+++. ..+..+....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~ 330 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYN 330 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCc
Confidence 8888888888766665 444433 333 33344567889999998886654 4555555 5555543 2222233344
Q ss_pred EEEEEcCCCCEEEEEECCC---cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC---eEEEE
Q psy4869 535 TGLSLSPDGSYILSNAMDN---TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK---CVYIW 608 (2435)
Q Consensus 535 ~~i~~spdg~~las~s~Dg---~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg---~V~iw 608 (2435)
....|+|||++|+..+.++ .|.+||+... ... .+.... ......|+|||++|+..+.++ .+.+.
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g----~~~-~lt~~~-----~~~~p~~spdg~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATG----QVT-ALTDTT-----RDESPSFAPNGRYILYATQQGGRSVLAAV 400 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCC----CeE-EccCCC-----CccCceECCCCCEEEEEEecCCCEEEEEE
Confidence 5688999999999777654 6999998742 222 222111 124578999999998877543 36666
Q ss_pred ECCCCcEEEEecCCCCCeeEEEEcCC
Q psy4869 609 DTTTRRIAYKLPGHNGSVNDVQFHPK 634 (2435)
Q Consensus 609 d~~s~~~~~~l~~h~~~V~~l~fspd 634 (2435)
+. +++....+..+.+.+...+|+|-
T Consensus 401 ~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 401 SS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EC-CCCceEEeecCCCCCCCCccCCC
Confidence 66 56666677677788888888874
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-09 Score=127.48 Aligned_cols=306 Identities=15% Similarity=0.136 Sum_probs=211.7
Q ss_pred CCCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEe---------------CCCe
Q psy4869 884 HHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGT---------------KDGR 948 (2435)
Q Consensus 884 H~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~---------------~dg~ 948 (2435)
-+-++..+.+||.|++||+.....|.+|+...+..+..+.+ ..+.-+.|+|.++||..=. ++..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN 109 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeeeec-CCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence 34578899999999999999999999999998887777764 3566789999999998622 2346
Q ss_pred EEEEEccCCceeecccccccc--ee-EEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccc
Q psy4869 949 LLIVDIGAGEILEDIPAHSQE--LW-SVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRS 1025 (2435)
Q Consensus 949 V~vwd~~sg~~v~~~~~h~~~--V~-sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~ 1025 (2435)
+.|||+.+|.++..+....++ .| -+.|+-+.... .++ + ...+.++++. ....
T Consensus 110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~-------ARv-v---~~sl~i~e~t-~n~~------------- 164 (561)
T COG5354 110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYV-------ARV-V---GSSLYIHEIT-DNIE------------- 164 (561)
T ss_pred eeEEeccCceeEeeccccCCcccccceeeeeecchhh-------hhh-c---cCeEEEEecC-Cccc-------------
Confidence 999999999999999877776 77 77888765211 122 1 2457788752 1110
Q ss_pred cceeeeeeccccccCCCEEEEEEcCCCC--EEEE-----EECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEE
Q psy4869 1026 HKVLSLLHTRTLKLEEQVLCARVSPDSK--LLAV-----SLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIA 1098 (2435)
Q Consensus 1026 ~~~l~~~~~~~~~~~~~v~~l~~spdg~--~Lav-----g~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 1098 (2435)
..+...+ ...+|...+|+|.|+ .||. ....+.++||.+..+..+....-....=..+.|.+.|++|+
T Consensus 165 -----~~p~~~l-r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll 238 (561)
T COG5354 165 -----EHPFKNL-RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLL 238 (561)
T ss_pred -----cCchhhc-cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEE
Confidence 0000111 136788889999643 4443 24568899999987766665443333345678888888766
Q ss_pred EEE-----------CCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEE--eCCCcEEEEeCCCcceeEEEEEE
Q psy4869 1099 TGS-----------GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT--SKDGRVKQWDADNFERIVTLHFF 1165 (2435)
Q Consensus 1099 Sgs-----------~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~--s~Dg~V~iwD~~~~~~~~~~~~~ 1165 (2435)
.-- ...++.++++.... +.......++|...+|.|.++.+++. -.+..+.++|++.. ..
T Consensus 239 ~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~------ 310 (561)
T COG5354 239 VLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR------ 310 (561)
T ss_pred EEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-eE------
Confidence 421 23567888886333 33333568899999999988766554 46788999999875 11
Q ss_pred EeecccccCeEEEEEeCCCCEEEEEeCC---CcEEEEEccCCceee-EeeccCCCEEEEEEeeCCCEEEEEE
Q psy4869 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGD---RTVKVWGLDYGDCHK-SLLAHEDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1166 ~~~~~h~~~V~~l~~s~dg~~l~sgs~D---g~V~iwd~~t~~~~~-~~~~h~~~V~~i~~spd~~~lvsgs 1233 (2435)
.......=+.+.|+|.+++++.++-| |.|.+||......+. .+.+ ....-+.|+|+++++.+..
T Consensus 311 --~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 311 --FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred --EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecC
Confidence 12445566778899999999998765 779999988654333 4433 2345567999998777654
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-10 Score=129.97 Aligned_cols=331 Identities=18% Similarity=0.226 Sum_probs=222.7
Q ss_pred eecCCCCceEEEEecCCCcEEEEe-cCCcEEEEe-CCCCceeEEEe--CCCeEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q psy4869 880 HAQGHHSEVRALAFSSDNLALVSA-CASQVKIWN-RPSLSCLRTID--TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG 955 (2435)
Q Consensus 880 ~l~GH~~~V~~la~s~dg~~la~g-~~~~V~Iwd-~~~~~~~~~l~--~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~ 955 (2435)
++.||.+.|++...-|...-++.. .+..|+||- .+.++.-..+. -+..+.++++.++-+.|++|..+|.+.-+.+.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence 357888888888777665555555 468999995 55666654443 67889999999999999999999999988654
Q ss_pred C----CceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeee
Q psy4869 956 A----GEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1031 (2435)
Q Consensus 956 s----g~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~ 1031 (2435)
. ...++...+|...+..+-|+... ..+++.+.|..+.-.-.+.+.-.. +..
T Consensus 99 edfnkm~~~r~~~~h~~~v~~~if~~~~----------e~V~s~~~dk~~~~hc~e~~~~lg------------~Y~--- 153 (404)
T KOG1409|consen 99 EDFNKMTFLKDYLAHQARVSAIVFSLTH----------EWVLSTGKDKQFAWHCTESGNRLG------------GYN--- 153 (404)
T ss_pred hhhhhcchhhhhhhhhcceeeEEecCCc----------eeEEEeccccceEEEeeccCCccc------------ceE---
Confidence 3 44667778899999999998654 478888887765433322211100 000
Q ss_pred eeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEc--CCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy4869 1032 LHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFL--DTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1109 (2435)
Q Consensus 1032 ~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~--~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vW 1109 (2435)
.....+++.+.-. +..+|...|.|....+ ....++.++.+|.+.+.+++|.+...+|.+|..|..+.+|
T Consensus 154 -------~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 154 -------FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred -------eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence 0111111222222 5667766777777654 3567888999999999999999999999999999999999
Q ss_pred EccCCc-eeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEE-----------------------E
Q psy4869 1110 GLDYGD-CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF-----------------------F 1165 (2435)
Q Consensus 1110 d~~t~~-~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~-----------------------~ 1165 (2435)
|+.-.+ ....+.+|.+.|..+...+--+.+++++.||.|.+||.+.......--. .
T Consensus 225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~ 304 (404)
T KOG1409|consen 225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQ 304 (404)
T ss_pred eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhh
Confidence 997554 3456778999999999998889999999999999999864321110000 0
Q ss_pred Eeeccc-----ccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC-------CceeeEeeccCCCEEEEEEeeCCCEEEEEE
Q psy4869 1166 ISLYGH-----KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY-------GDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1166 ~~~~~h-----~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t-------~~~~~~~~~h~~~V~~i~~spd~~~lvsgs 1233 (2435)
..+..| ...|...+-+ +.....+-+..-.+|+.|.-. ...+..+..-...|+.+.+...-..|+++|
T Consensus 305 ~glr~h~crkcg~avc~~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG 383 (404)
T KOG1409|consen 305 LGLRQHHCRKCGKAVCGKCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSG 383 (404)
T ss_pred hhhhhhhhhhhhhhcCccccc-CccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecC
Confidence 000001 1122222222 222222333344566655321 123445544455788988888778899999
Q ss_pred CCCcEEEEECCC
Q psy4869 1234 KDGRVKQWDADN 1245 (2435)
Q Consensus 1234 ~Dg~I~vwD~~~ 1245 (2435)
.|+.|++||++.
T Consensus 384 ~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 384 TDRVIKIWDVRS 395 (404)
T ss_pred CceEEEEEechh
Confidence 999999999875
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-10 Score=131.41 Aligned_cols=364 Identities=15% Similarity=0.246 Sum_probs=230.2
Q ss_pred eeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEc-ccccccccccccccccccccceeeeeecccc
Q psy4869 959 ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQL-ELVSVNREADEETKDVSRSHKVLSLLHTRTL 1037 (2435)
Q Consensus 959 ~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1037 (2435)
+...+.+|.+.++....-| +..-+++.+.|.++|+|-- +.++. ....-.
T Consensus 16 ll~~~eG~~d~vn~~~l~~----------~e~gv~~~s~drtvrv~lkrds~q~--------------------wpsI~~ 65 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIP----------KEEGVISVSEDRTVRVWLKRDSGQY--------------------WPSIYH 65 (404)
T ss_pred hhhhhcCchhhhhhheecc----------CCCCeEEccccceeeeEEecccccc--------------------Cchhhh
Confidence 4445566666665554443 3467899999999999963 21111 111122
Q ss_pred ccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC----CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC
Q psy4869 1038 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLD----TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1113 (2435)
Q Consensus 1038 ~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~----~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t 1113 (2435)
..+.+++++.+.++.+.|++|-.+|.+.-+.+. .....+....|..+|..+-|+-...++++.+.|..+.---.+.
T Consensus 66 ~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 66 YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 346789999999999999999999999988653 4455566678999999999998889999999998877666666
Q ss_pred CceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC
Q psy4869 1114 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1193 (2435)
Q Consensus 1114 ~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 1193 (2435)
+..+....-- ....++.|.-. +.+.|...|.|....+..... ..+..+.+|.+++.+++|.+....+++|..|
T Consensus 146 ~~~lg~Y~~~-~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~----~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d 218 (404)
T KOG1409|consen 146 GNRLGGYNFE-TPASALQFDAL--YAFVGDHSGQITMLKLEQNGC----QLITTFNGHTGEVTCLKWDPGQRLLFSGASD 218 (404)
T ss_pred CCcccceEee-ccCCCCceeeE--EEEecccccceEEEEEeecCC----ceEEEEcCcccceEEEEEcCCCcEEEecccc
Confidence 6544322110 01111111111 455566667776665543322 2344567999999999999999999999999
Q ss_pred CcEEEEEccCCce-eeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEee--CCcccccCceEEEEEE
Q psy4869 1194 RTVKVWGLDYGDC-HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF--NPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1194 g~V~iwd~~t~~~-~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~--~~~~~~~~~~~lv~g~ 1270 (2435)
..|.+||+--++- ...+.+|.+.|..+...+--+.+++++.||.|.+||.+...... .+. ....-.
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~et-pewl~s~~cQ~---------- 287 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVET-PEWLDSDSCQK---------- 287 (404)
T ss_pred CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecC-ccccccchhhh----------
Confidence 9999999975543 45677999999999999989999999999999999987533211 100 000000
Q ss_pred CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEE--------EE
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKI--------FF 1342 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v--------~d 1342 (2435)
=..-..|+++..-..... .+....-+.-+...|..++.......+...+-.+|+ +|
T Consensus 288 -c~qpffwn~~~m~~~k~~---------------glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~ 351 (404)
T KOG1409|consen 288 -CNQPFFWNFRQMWDRKQL---------------GLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKD 351 (404)
T ss_pred -hCchHHHHHHHHHhhhhh---------------hhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhc
Confidence 011223433311100000 000001111122333333333222222222223333 33
Q ss_pred cccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1343 LDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1387 (2435)
Q Consensus 1343 ~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~ 1387 (2435)
... .++..+..-...|+.|.+..+-.+|+++|.|..|+|||++.
T Consensus 352 ~~~-t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 352 EER-TPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred CCC-CccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 222 33455555556799999999999999999999999999864
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.1e-07 Score=124.68 Aligned_cols=438 Identities=14% Similarity=0.168 Sum_probs=250.9
Q ss_pred CccceEEEeecCCCCeEEEEEcCCeEEEE----ECCCC--CeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEcc
Q psy4869 74 EKHEVCQLSPNHDSSQLAVAYTNGSLKTF----SLDTT--DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147 (2435)
Q Consensus 74 ~~~~v~~~~~~~d~~~lav~~~~G~i~i~----d~~~~--~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~ 147 (2435)
....|.++.+-+|...++++..+|.|.++ +.+.. +.++. -...|.|++|+||+.+||....+++|.+-+ .
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMT-R 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-c
Confidence 44567899999999999999999999999 44433 33333 358999999999999999999999998875 4
Q ss_pred CCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccc--------------cccccccceEEEEEEEe
Q psy4869 148 AECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCF--------------KTMAAHLTEVWGVCVMR 213 (2435)
Q Consensus 148 ~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~--------------~~~~~h~~~V~~l~~~p 213 (2435)
...++....-|.... +....++.|+..+=.-+....|+.. ..+. +.+.-..++|-.
T Consensus 150 ~fd~i~E~~l~~~~~---------~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 150 DFDPISEVPLDSDDF---------GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG 219 (928)
T ss_pred cceEEEEeecCcccc---------CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence 444444433222110 1112333333332222222222210 1122 333445677888
Q ss_pred CCCeEEEeeC---C---CcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEE
Q psy4869 214 EDSYLISGSN---D---AELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQ 287 (2435)
Q Consensus 214 ~~~~l~s~s~---D---g~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~ 287 (2435)
||.+|++.+- + ..+|||+-+
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re------------------------------------------------------ 245 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE------------------------------------------------------ 245 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC------------------------------------------------------
Confidence 8888886653 2 234555432
Q ss_pred EEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEE
Q psy4869 288 VFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFC 367 (2435)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~ 367 (2435)
...... ..|. .+--.+
T Consensus 246 ----------------------------------------------G~L~st------------SE~v------~gLe~~ 261 (928)
T PF04762_consen 246 ----------------------------------------------GELQST------------SEPV------DGLEGA 261 (928)
T ss_pred ----------------------------------------------ceEEec------------cccC------CCccCC
Confidence 110000 0000 000125
Q ss_pred EEECCCCCEEEEEeC---CCeEEEEecCCceeeEEEee--CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEE-
Q psy4869 368 SKYHPDGQYIASSGY---DRQIFIWSVYGECENIGVMS--GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIK- 441 (2435)
Q Consensus 368 l~fspdg~~Lasgs~---Dg~I~iwd~~~~~~~~~~l~--~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~- 441 (2435)
++|-|.|++||+... ...|.+|.-++...-...+. .....|..|+|+.|+..|+..-.|. |.+|-..+-.+--
T Consensus 262 l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 262 LSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred ccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence 789999999998864 34566665443222222222 4567899999999999999977665 9999976654322
Q ss_pred -EEec-cCccccccCcccCCCeEEEEEeCCCeEEEEeCC----CC----------------c----------------ce
Q psy4869 442 -KMKG-HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR----KK----------------N----------------QA 483 (2435)
Q Consensus 442 -~l~~-h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~----~~----------------~----------------~~ 483 (2435)
.+.- ....+..+.|+|..+..+.....++.+..++.. .+ . ..
T Consensus 341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~ 420 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS 420 (928)
T ss_pred EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhc
Confidence 2221 123344588999888777766665655544421 11 0 11
Q ss_pred EeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE--------EEEE----------ecCCCCEEEEEEcCCCCE
Q psy4869 484 VSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV--------VQKL----------RGHSDTVTGLSLSPDGSY 545 (2435)
Q Consensus 484 ~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~--------v~~l----------~~h~~~V~~i~~spdg~~ 545 (2435)
..+.....|.+++|++++..+++-..||.|.+|+...... ...+ ......+..+.|..+...
T Consensus 421 ~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (928)
T PF04762_consen 421 YELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTL 500 (928)
T ss_pred eEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEE
Confidence 2223566799999999999899999999999998543211 1111 112346788899888877
Q ss_pred EEEEECC---CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcE-EEEecC
Q psy4869 546 ILSNAMD---NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI-AYKLPG 621 (2435)
Q Consensus 546 las~s~D---g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~-~~~l~~ 621 (2435)
++....+ ..+.++++..... ...+.... ..+..+..+...++...++.-..||.+..++...... +..++.
T Consensus 501 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~ 575 (928)
T PF04762_consen 501 LVLSDSDSNQSKIVLVDIDDSEN-SASVESST----EVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ 575 (928)
T ss_pred EEEEecCcccceEEEEEeccCCC-ceeEEEEe----ccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC
Confidence 7766654 6788888753211 11111111 1123445555555555466666788888766554322 222222
Q ss_pred CCCCeeEEEEcCCC--CEEEEEECCCcEEE
Q psy4869 622 HNGSVNDVQFHPKE--PIIMSASSDKTIYL 649 (2435)
Q Consensus 622 h~~~V~~l~fspd~--~~Lasgs~Dg~I~v 649 (2435)
--..+..+.+.... ..++.=+..|.+++
T Consensus 576 ~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~ 605 (928)
T PF04762_consen 576 PCPWMEVCQINGSEDKRVLFGLSSNGRLYA 605 (928)
T ss_pred CCcEEEEEEECCccceeEEEEECCCCEEEE
Confidence 22222222333222 24444455666665
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-08 Score=126.44 Aligned_cols=277 Identities=13% Similarity=0.216 Sum_probs=182.6
Q ss_pred EEEEeCC----CeEEEEecC--CceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC----CCeEEEEECCCC--c--eEEE
Q psy4869 377 IASSGYD----RQIFIWSVY--GECENIGVMSGHTGAVMDLKFSTDGCHIFTCST----DQTLAVWDLEKG--Q--RIKK 442 (2435)
Q Consensus 377 Lasgs~D----g~I~iwd~~--~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~----Dg~I~vwd~~tg--~--~v~~ 442 (2435)
++.|++. +.|.+|++. .+...............-|++++++++|+++.. ++.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4455555 678888773 222211111223455667899999999999887 468999988764 2 3333
Q ss_pred EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe----e-----------cCcccEEEEEECCCCCEEEEE
Q psy4869 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS----M-----------NNTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 443 l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~----~-----------~~~~~v~sv~~sp~g~~l~sg 507 (2435)
..........+.+.+++..++++.-.+|.|.++++.....+.. . .......++.|+|+|+++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323334456778899988888888899999999986322221 1 123457899999999998887
Q ss_pred ec-CCeEEEEECCCCc--EE--EEEe-cCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcc--c
Q psy4869 508 GI-DNDIKMWDLRTNS--VV--QKLR-GHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQ--H 578 (2435)
Q Consensus 508 s~-dg~V~lwD~~s~~--~v--~~l~-~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~--~ 578 (2435)
.. ...|++|++.... +. ..+. .....-..+.|+|||++++... .+++|.+|++.......+.++...... .
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 54 4679999997654 32 2333 3445678999999999987655 588999999873221223333333221 1
Q ss_pred ccccCeEEEEEcCCCCEEEEec-CCCeEEEEECC--CCc--EEEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEecC
Q psy4869 579 NFEKNLLRCAWSVSGLYVTAGS-ADKCVYIWDTT--TRR--IAYKLPGHNGSVNDVQFHPKEPIIMSAS-SDKTIYLGES 652 (2435)
Q Consensus 579 ~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iwd~~--s~~--~~~~l~~h~~~V~~l~fspd~~~Lasgs-~Dg~I~vWd~ 652 (2435)
........+.++|||++|++.. ..+.|.+|++. +++ .+..+.......+.++++|++++|+++. .++.|.+|++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 1122578899999999988876 46789999983 343 4444544455689999999999999887 5578999987
Q ss_pred C
Q psy4869 653 P 653 (2435)
Q Consensus 653 ~ 653 (2435)
+
T Consensus 322 d 322 (345)
T PF10282_consen 322 D 322 (345)
T ss_dssp E
T ss_pred e
Confidence 5
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-08 Score=123.18 Aligned_cols=463 Identities=14% Similarity=0.177 Sum_probs=294.1
Q ss_pred CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCc---------------eeecccccccceeEEEEecCCCCCCCcCCc
Q psy4869 924 TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGE---------------ILEDIPAHSQELWSVAMLPDQFNPNVYLPL 988 (2435)
Q Consensus 924 ~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~---------------~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~ 988 (2435)
......|++|.....++++|+.||.+.|..+.+.. .-.++.+|+..|.-+.|..+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~--------- 83 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN--------- 83 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc---------
Confidence 34455688999999999999999999988765321 234467899999999998875
Q ss_pred ceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy4869 989 QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFF 1068 (2435)
Q Consensus 989 ~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d 1068 (2435)
..|-+...+|.|.+|-+-.+.+-.+ +..-..+.-|.+++|..||..+++...||.|.|=.
T Consensus 84 -QKLTtSDt~GlIiVWmlykgsW~EE-------------------MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 84 -QKLTTSDTSGLIIVWMLYKGSWCEE-------------------MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred -ccccccCCCceEEEEeeecccHHHH-------------------HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 4788888899999999865554221 11112345688999999999999999999999988
Q ss_pred cCCCeEEE-EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCC-------ceeEE----EeccCCCEEEEEEc---
Q psy4869 1069 LDTFKFFI-SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG-------DCHKS----LLAHEDSVTGVTFV--- 1133 (2435)
Q Consensus 1069 ~~~~~~~~-~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~-------~~~~~----l~~h~~~V~~v~fs--- 1133 (2435)
++..+... .+++. -...+.|++|.+.++.+-.+|.+.++|.+.. .+.-. +......|-.+.|.
T Consensus 144 vdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 144 VDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred eccceecchhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 87654322 23322 2346789999999998999999999997532 11111 11122346666665
Q ss_pred -----cCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC---------CcEEEE
Q psy4869 1134 -----PKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD---------RTVKVW 1199 (2435)
Q Consensus 1134 -----p~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D---------g~V~iw 1199 (2435)
|+...|+++-.+|.+.+-.-.+......+. ..-.+..+.|+++|..|++++.+ +.|..|
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-------tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-------TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-------cccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence 366789999999999887765544433332 33568889999999999998854 245555
Q ss_pred EccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCC--------------------------------cEEEEECCCCc
Q psy4869 1200 GLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG--------------------------------RVKQWDADNFE 1247 (2435)
Q Consensus 1200 d~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg--------------------------------~I~vwD~~~~~ 1247 (2435)
..- |+.+..++.....|++++|-..+-.++.+ .|+ .|.+||..+.+
T Consensus 295 sp~-G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 295 SPY-GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNE 372 (1189)
T ss_pred ccc-hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccCh
Confidence 543 67777787777788888885433222211 111 25667765432
Q ss_pred e------------------EEEEeeCCc-------------cc---------ccC--------------ceEEEEEECCC
Q psy4869 1248 R------------------IVTLHFNPN-------------VY---------LPL--------------QIQVVTGGGDK 1273 (2435)
Q Consensus 1248 ~------------------v~~~~~~~~-------------~~---------~~~--------------~~~lv~g~~d~ 1273 (2435)
. +........ .| .+. ...-++.....
T Consensus 373 k~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e 452 (1189)
T KOG2041|consen 373 KTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE 452 (1189)
T ss_pred hhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc
Confidence 1 000000000 00 000 01123344556
Q ss_pred eEEEEEcccccccccccccccc---------ccc--ccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEE
Q psy4869 1274 SVKLWQLELVSVNREADEETKD---------VSR--SHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFF 1342 (2435)
Q Consensus 1274 ~v~iwdl~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d 1342 (2435)
.+.+|.....+........... .+. .......-.......+.+|..++.+ .++|.++-..|.|.-|.
T Consensus 453 ~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~ryS 530 (1189)
T KOG2041|consen 453 RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYS 530 (1189)
T ss_pred cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEE
Confidence 7889988755443322221000 000 0001111112233445667666654 67899999999999999
Q ss_pred cccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC---CCceEE-EecccccceEEEEEeeCCCEEEEEeC
Q psy4869 1343 LDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD---YGDCHK-SLLAHEDSVTGVTFVPKTHYFFTTSK 1418 (2435)
Q Consensus 1343 ~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~---~gk~~~-~~~~h~~~V~~laf~P~~~~laSgg~ 1418 (2435)
+.+.-+...+. -...+..++++-+...++.-..-|.+.+.|++ +|..+. ...-....|.++.|..|+..|..--.
T Consensus 531 l~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlme 609 (1189)
T KOG2041|consen 531 LNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALME 609 (1189)
T ss_pred ecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhh
Confidence 98876655444 34468889998888888888888899888876 233333 33445567899999887755554444
Q ss_pred CCcEEEEECCC
Q psy4869 1419 DGRVKQWDADN 1429 (2435)
Q Consensus 1419 Dg~V~lWd~~~ 1429 (2435)
-.++.|++-.+
T Consensus 610 Ktrmyifrgnd 620 (1189)
T KOG2041|consen 610 KTRMYIFRGND 620 (1189)
T ss_pred hceEEEecCcC
Confidence 45566666554
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-08 Score=123.28 Aligned_cols=332 Identities=14% Similarity=0.100 Sum_probs=225.2
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCC---------------
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDR--------------- 1104 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg--------------- 1104 (2435)
.-++..+++||.|.+|+.....| |.+|....+..+..+. | ..|..+.|+|.+++|++=+..+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred CcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 45677899999999999887544 9999888776555555 3 4689999999999999855433
Q ss_pred cEEEEEccCCceeEEEeccCCC--EE-EEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEe
Q psy4869 1105 TVKVWGLDYGDCHKSLLAHEDS--VT-GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMS 1181 (2435)
Q Consensus 1105 ~I~vWd~~t~~~~~~l~~h~~~--V~-~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 1181 (2435)
.+.+||+.+|..+..+.....+ .+ -+.|+-+.++++=. ....++++++...-....+. ......|....|+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~-----~lr~~gi~dFsis 182 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFK-----NLRPVGILDFSIS 182 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchh-----hccccceeeEEec
Confidence 4999999999999988765544 44 67888777766543 34579999962221111111 1124678888898
Q ss_pred CCCC--EEEE-----EeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEee
Q psy4869 1182 YDST--LIAT-----GSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF 1254 (2435)
Q Consensus 1182 ~dg~--~l~s-----gs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~ 1254 (2435)
|.++ .|+. .+.++.+++|.+..+..+.+..-....-..+.|.+.+++|+.--. =+.. .
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~------t~~k---------s 247 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM------THTK---------S 247 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE------Eeee---------c
Confidence 8543 3332 456788999999877766554434444456788888887764211 0000 0
Q ss_pred CCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee-
Q psy4869 1255 NPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL- 1333 (2435)
Q Consensus 1255 ~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs- 1333 (2435)
+... -++..+++++++.... .....+++.|..++|.|.++.|++.+
T Consensus 248 nKsy-----------fgesnLyl~~~~e~~i----------------------~V~~~~~~pVhdf~W~p~S~~F~vi~g 294 (561)
T COG5354 248 NKSY-----------FGESNLYLLRITERSI----------------------PVEKDLKDPVHDFTWEPLSSRFAVISG 294 (561)
T ss_pred ccce-----------eccceEEEEeeccccc----------------------ceeccccccceeeeecccCCceeEEec
Confidence 1111 1234456666541110 00113578899999999999999866
Q ss_pred -cCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceEE-EecccccceEEEEEee
Q psy4869 1334 -LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD---RTVKVWGLDYGDCHK-SLLAHEDSVTGVTFVP 1408 (2435)
Q Consensus 1334 -~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~D---g~V~iwdl~~gk~~~-~~~~h~~~V~~laf~P 1408 (2435)
++-.+.+||+... + .+......-..+-|+|.+++++.+|.| |.|-+||......+. .+.+- ...-+.|+|
T Consensus 295 ~~pa~~s~~~lr~N-l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wsp 369 (561)
T COG5354 295 YMPASVSVFDLRGN-L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSP 369 (561)
T ss_pred ccccceeecccccc-e--EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccC
Confidence 6778888888765 3 334445556678899999999999887 779999988775544 44444 245677999
Q ss_pred CCCEEEEEe------CCCcEEEEECCCceeE
Q psy4869 1409 KTHYFFTTS------KDGRVKQWDADNFERI 1433 (2435)
Q Consensus 1409 ~~~~laSgg------~Dg~V~lWd~~~~~~l 1433 (2435)
++.++.+.- .|..++|||+...+..
T Consensus 370 d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 370 DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred CceEEEecCCCcccccCcceEEEEecCchhh
Confidence 998776643 5889999999986554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-07 Score=117.84 Aligned_cols=303 Identities=17% Similarity=0.139 Sum_probs=191.0
Q ss_pred EEEEECC----CcEEEEEc--CCCeEE--EEEecCCcCEEEEEEcCCCCEEEEEEC----CCcEEEEEccCC--c--eeE
Q psy4869 1055 LAVSLLD----TTVKIFFL--DTFKFF--ISLYGHKLPVLSLDMSYDSTLIATGSG----DRTVKVWGLDYG--D--CHK 1118 (2435)
Q Consensus 1055 Lavg~~d----g~V~i~d~--~~~~~~--~~l~~h~~~V~sl~~spdg~~L~Sgs~----Dg~I~vWd~~t~--~--~~~ 1118 (2435)
+++|+.. +.|.+|++ +++++. ..+. -......|+++|++++|++... ++.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4566655 68888887 344432 2222 3345667889999999999877 568999998754 3 333
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCcceeEEEEEEEee--------cccccCeEEEEEeCCCCEEEE
Q psy4869 1119 SLLAHEDSVTGVTFVPKTHYFFTTSK-DGRVKQWDADNFERIVTLHFFISL--------YGHKLPVLSLDMSYDSTLIAT 1189 (2435)
Q Consensus 1119 ~l~~h~~~V~~v~fsp~~~~l~s~s~-Dg~V~iwD~~~~~~~~~~~~~~~~--------~~h~~~V~~l~~s~dg~~l~s 1189 (2435)
...........++++|++++|+++.+ +|.|.++++.....+......... ........++.++|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33334556678999999999988874 889999999875433333211111 122356789999999999988
Q ss_pred EeC-CCcEEEEEccCCc--ee--eEee-ccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcccccC
Q psy4869 1190 GSG-DRTVKVWGLDYGD--CH--KSLL-AHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNVYLPL 1262 (2435)
Q Consensus 1190 gs~-Dg~V~iwd~~t~~--~~--~~~~-~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~ 1262 (2435)
... ...|++|++.... +. ..+. .....-+.+.|+|+++++.+.. .++.|.++++....
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~--------------- 225 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD--------------- 225 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT---------------
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC---------------
Confidence 763 4579999997655 21 2222 3345678999999999887776 57778888765211
Q ss_pred ceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee-cCCeEEEE
Q psy4869 1263 QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-LDTTVKIF 1341 (2435)
Q Consensus 1263 ~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs-~dG~V~v~ 1341 (2435)
+.+.....- ..+.. ...-......|+++|||++|.++. ..+.|.+|
T Consensus 226 ----------g~~~~~~~~----------------------~~~~~-~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 226 ----------GSLTEIQTI----------------------STLPE-GFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp ----------TEEEEEEEE----------------------ESCET-TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred ----------CceeEEEEe----------------------eeccc-cccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 111111100 00000 001113567889999999988866 56689999
Q ss_pred Eccc--c--eEEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeC--CCCceEEEec-ccccceEEEEE
Q psy4869 1342 FLDT--F--KFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGL--DYGDCHKSLL-AHEDSVTGVTF 1406 (2435)
Q Consensus 1342 d~~~--~--k~i~~~~~h~~~V~~la~spdg~~L~sGg-~Dg~V~iwdl--~~gk~~~~~~-~h~~~V~~laf 1406 (2435)
+++. + +.+..+.......+.++++|+|++|+++. .++.|.+|++ ++|++..... .......||.|
T Consensus 273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9942 3 44445554444589999999999999887 4578999876 5677655432 22334556665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-09 Score=137.27 Aligned_cols=220 Identities=15% Similarity=0.154 Sum_probs=147.8
Q ss_pred ecccCCcEEEEEECCCCCEEEEEeC---CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCC--eEEE
Q psy4869 358 LEGHGGEIFCSKYHPDGQYIASSGY---DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQ--TLAV 431 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~~Lasgs~---Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg--~I~v 431 (2435)
+..+...+...+|+|||+.|+..+. +..|.+||+.++... .+....+.+..++|+|||+.|+.. +.+| .|++
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 4456678999999999999887542 457999998764322 222233445578999999988865 3344 5999
Q ss_pred EECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEE--eCCCCcceEeecCcccEEEEEECCCCCEEEEEec
Q psy4869 432 WDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVW--DPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI 509 (2435)
Q Consensus 432 wd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vw--D~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~ 509 (2435)
||+++++... +..+...+....|+|++..++.+...++...+| |+..+................|+|||++|+..+.
T Consensus 272 ~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 272 MDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred EECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 9998887544 433445567889999998777666555554555 6665544332233344567899999999987654
Q ss_pred C---CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCc---EEEEEcCCCCCCCceEEEEeCcccccccC
Q psy4869 510 D---NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNT---VRIWDIRPYVPGERCVKVMSGHQHNFEKN 583 (2435)
Q Consensus 510 d---g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~---I~lWdl~~~~~~~~~v~~~~~h~~~~~~~ 583 (2435)
+ ..|++||+.+++.. .+... .......|+|||++|+.++.|+. +.++++. ++....+.+|. ..
T Consensus 351 ~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-----G~~~~~l~~~~----~~ 419 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-----GRFKARLPATD----GQ 419 (429)
T ss_pred cCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-----CCCeEECccCC----CC
Confidence 3 35889999888653 33321 22346789999999999888765 5666664 33444555443 24
Q ss_pred eEEEEEcC
Q psy4869 584 LLRCAWSV 591 (2435)
Q Consensus 584 i~~v~~sp 591 (2435)
+...+|+|
T Consensus 420 ~~~p~Wsp 427 (429)
T PRK03629 420 VKFPAWSP 427 (429)
T ss_pred cCCcccCC
Confidence 56677876
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=124.03 Aligned_cols=327 Identities=15% Similarity=0.176 Sum_probs=222.7
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC-----------CCcEEEEEc
Q psy4869 1043 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-----------DRTVKVWGL 1111 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~-----------Dg~I~vWd~ 1111 (2435)
-+-+.|||-|.||++-...| |.+|--.+...++.+. |. .|.-++|||+.++|++=+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 34689999999999988555 8999888777777776 54 5888999999999998542 257999999
Q ss_pred cCCceeEEEecc---CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEE
Q psy4869 1112 DYGDCHKSLLAH---EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIA 1188 (2435)
Q Consensus 1112 ~t~~~~~~l~~h---~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~ 1188 (2435)
.+|...+.+... .....-..|+.|+++++.... +.|.+|+......+..- .-.-..|....|+|.+..||
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~K------slki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKK------SLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccc------ccCCccccCcccCCCcceEE
Confidence 999988887652 223356789999998887666 67999997764332211 12346788999999988776
Q ss_pred EEeC-----CCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCc
Q psy4869 1189 TGSG-----DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQ 1263 (2435)
Q Consensus 1189 sgs~-----Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~ 1263 (2435)
-=.. -..+.+..+.+++.++..+-|+-.=..+.|-.+|.+|+.-- |..+...
T Consensus 363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv--------dR~tK~~--------------- 419 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV--------DRHTKSK--------------- 419 (698)
T ss_pred EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE--------Eeecccc---------------
Confidence 4321 23466777777777766665554444566777777766421 1100000
Q ss_pred eEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec---CCeEEE
Q psy4869 1264 IQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL---DTTVKI 1340 (2435)
Q Consensus 1264 ~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~---dG~V~v 1340 (2435)
+.+.-..+.|+.++.... ......++..+...+|-|.|+.|++-+. ...+.+
T Consensus 420 ----~~g~f~n~eIfrireKdI---------------------pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsf 474 (698)
T KOG2314|consen 420 ----VKGQFSNLEIFRIREKDI---------------------PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSF 474 (698)
T ss_pred ----ccceEeeEEEEEeeccCC---------------------CceeeecchheeeeeeccCCCeEEEEEccccccceeE
Confidence 111122355565542211 1123356788999999999999998653 346888
Q ss_pred EEccc----ceEEEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEE
Q psy4869 1341 FFLDT----FKFFISLYGHKLPVLSLDMSYDSTLIATGS---GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF 1413 (2435)
Q Consensus 1341 ~d~~~----~k~i~~~~~h~~~V~~la~spdg~~L~sGg---~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~l 1413 (2435)
|.+++ .+++..+. ....+.+-|+|.|++++.+. ..|.+.++|.....+...........+.+.|+|.|+++
T Consensus 475 Y~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYv 552 (698)
T KOG2314|consen 475 YAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYV 552 (698)
T ss_pred EEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEE
Confidence 88873 22333333 24567889999999998875 56889999998654443333334568999999999999
Q ss_pred EEEeC------CCcEEEEECCC
Q psy4869 1414 FTTSK------DGRVKQWDADN 1429 (2435)
Q Consensus 1414 aSgg~------Dg~V~lWd~~~ 1429 (2435)
++++. |..-+||++..
T Consensus 553 vT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 553 VTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EEeeehhhhccccceEEEEeec
Confidence 99874 55566777665
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.1e-09 Score=125.00 Aligned_cols=312 Identities=15% Similarity=0.190 Sum_probs=212.5
Q ss_pred ceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEe-----------CCCeEEEEEcc
Q psy4869 887 EVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGT-----------KDGRLLIVDIG 955 (2435)
Q Consensus 887 ~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~-----------~dg~V~vwd~~ 955 (2435)
.=+-+.|||.|.||++-....|.+|.-.+..++.++.++ .+.-+.|||..+||+.=+ +...+.|||+.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 446699999999999999999999999998888888765 455689999999999611 23689999999
Q ss_pred CCceeecccc--cccceeE-EEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeee
Q psy4869 956 AGEILEDIPA--HSQELWS-VAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLL 1032 (2435)
Q Consensus 956 sg~~v~~~~~--h~~~V~s-v~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 1032 (2435)
+|.+.+.+.. ....+|- +.|+.|+ ..+|--.. ..|.+++..... +.
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~Dd----------Ky~Arm~~-~sisIyEtpsf~--------------------ll 339 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDD----------KYFARMTG-NSISIYETPSFM--------------------LL 339 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCC----------ceeEEecc-ceEEEEecCcee--------------------ee
Confidence 9999998876 3334444 4788886 23443333 668888754221 11
Q ss_pred eccccccCCCEEEEEEcCCCCEEEEEEC-----CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEE-------
Q psy4869 1033 HTRTLKLEEQVLCARVSPDSKLLAVSLL-----DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG------- 1100 (2435)
Q Consensus 1033 ~~~~~~~~~~v~~l~~spdg~~Lavg~~-----dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sg------- 1100 (2435)
+.+.++ -.+|....|+|.+.+||.=.. -..+.+..+.+++.+++..-|.-.=..+-|-.+|.+|+.-
T Consensus 340 d~Kslk-i~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 340 DKKSLK-ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred cccccC-CccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccc
Confidence 222222 257888999999999986542 2567888888888888776654433455676777777742
Q ss_pred ---ECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCc-ceeEEEEEEEeeccccc
Q psy4869 1101 ---SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK---DGRVKQWDADNF-ERIVTLHFFISLYGHKL 1173 (2435)
Q Consensus 1101 ---s~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~---Dg~V~iwD~~~~-~~~~~~~~~~~~~~h~~ 1173 (2435)
+.-..+-|+.++....--....-...|...+|-|.|+.+++-+. ..++.+|.+++. .....+ .. -...
T Consensus 419 ~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV---k~--~dk~ 493 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV---KE--LDKK 493 (698)
T ss_pred cccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh---hh--hccc
Confidence 12223555655544322222235678899999999987765543 356888888742 211111 11 2235
Q ss_pred CeEEEEEeCCCCEEEEEe---CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCC
Q psy4869 1174 PVLSLDMSYDSTLIATGS---GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG 1236 (2435)
Q Consensus 1174 ~V~~l~~s~dg~~l~sgs---~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg 1236 (2435)
..+.+.|+|.|++++++. ..|.+..+|.....+...-.......+.+.|.|.|+++++++.-.
T Consensus 494 ~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 494 FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehh
Confidence 678899999999998865 568899999885333322222334578899999999999988543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-09 Score=138.67 Aligned_cols=175 Identities=17% Similarity=0.203 Sum_probs=115.7
Q ss_pred EEEEEECCCCCEEE-EEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC-CCeEEEEE--CCCCceE
Q psy4869 365 IFCSKYHPDGQYIA-SSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST-DQTLAVWD--LEKGQRI 440 (2435)
Q Consensus 365 V~~l~fspdg~~La-sgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~vwd--~~tg~~v 440 (2435)
+.+.+|+|||+.|+ +.+.+|...||.+.........+..+.+......|+|||++|+.++. ++...+|. +.+++.
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~- 320 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA- 320 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-
Confidence 34678999999886 56778877777653221223345555666678899999999887665 45555554 445543
Q ss_pred EEEeccCccccccCcccCCCeEEEEEeCCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCC---eEEE
Q psy4869 441 KKMKGHSTFVNSCDPVRRGQLLIASGSDDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDN---DIKM 515 (2435)
Q Consensus 441 ~~l~~h~~~v~sv~~~~~~~~llasgs~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg---~V~l 515 (2435)
..+..+........|+|++..++.+...++ .|.+||+.+++... +..........|+|||+.|+....++ .+++
T Consensus 321 ~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 321 QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 233222333445678999977665554433 69999998776443 32223446789999999988876544 3666
Q ss_pred EECCCCcEEEEEecCCCCEEEEEEcCC
Q psy4869 516 WDLRTNSVVQKLRGHSDTVTGLSLSPD 542 (2435)
Q Consensus 516 wD~~s~~~v~~l~~h~~~V~~i~~spd 542 (2435)
.+. +++....+..+.+.+...+|+|-
T Consensus 400 ~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 400 VSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEC-CCCceEEeecCCCCCCCCccCCC
Confidence 677 46666677777778888888873
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-09 Score=123.16 Aligned_cols=148 Identities=14% Similarity=0.315 Sum_probs=109.7
Q ss_pred EEEEECCCCCEEEEEec----------CCeEEEEECCC-CcEEEEEec-CCCCEEEEEEcCCCCEEEEE--ECCCcEEEE
Q psy4869 493 TSVAFNDTAECVLTGGI----------DNDIKMWDLRT-NSVVQKLRG-HSDTVTGLSLSPDGSYILSN--AMDNTVRIW 558 (2435)
Q Consensus 493 ~sv~~sp~g~~l~sgs~----------dg~V~lwD~~s-~~~v~~l~~-h~~~V~~i~~spdg~~las~--s~Dg~I~lW 558 (2435)
..+.|+++|++|++-.. -|...||.++. ...+..+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35788999988775433 23455555532 334555543 34579999999999997654 467899999
Q ss_pred EcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC---CCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCC
Q psy4869 559 DIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA---DKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKE 635 (2435)
Q Consensus 559 dl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~---Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~ 635 (2435)
|++ .+.+..+.. ..+..+.|+|+|++|+.++. .|.|.+||.++.+.+.... | ..++.++|+|||
T Consensus 89 d~~-----~~~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdG 155 (194)
T PF08662_consen 89 DVK-----GKKIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDG 155 (194)
T ss_pred cCc-----ccEeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCC
Confidence 996 344555532 24567999999999999875 4679999999988887763 3 347899999999
Q ss_pred CEEEEEEC------CCcEEEecCC
Q psy4869 636 PIIMSASS------DKTIYLGESP 653 (2435)
Q Consensus 636 ~~Lasgs~------Dg~I~vWd~~ 653 (2435)
++|+++.. |..++||++.
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CEEEEEEeccceeccccEEEEEec
Confidence 99999874 6788899885
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-09 Score=137.20 Aligned_cols=200 Identities=16% Similarity=0.174 Sum_probs=139.3
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCC---CeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEE-EEeCCC--eEE
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYD---RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIF-TCSTDQ--TLA 430 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~D---g~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~-s~s~Dg--~I~ 430 (2435)
.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.++... .+..+.+....++|+|||+.|+ +.+.++ .|+
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--EeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 345677789999999999999987744 46999999765332 2333445556789999999876 445555 599
Q ss_pred EEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCe--EEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe
Q psy4869 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT--VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG 508 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~--I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs 508 (2435)
+||+.+++. ..+..+........|+|++..++.+...++. |.++|+..++..............+|+|+|++|+..+
T Consensus 276 ~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 276 VMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEE
Confidence 999988764 4455555555678899999877777666665 6666766655433222333445789999999998775
Q ss_pred cCC---eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECC---CcEEEEEcC
Q psy4869 509 IDN---DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMD---NTVRIWDIR 561 (2435)
Q Consensus 509 ~dg---~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~D---g~I~lWdl~ 561 (2435)
.++ .|++||+.+++.. .+. +........|+|||++|+..+.+ +.|.++|+.
T Consensus 355 ~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 443 6999999888765 333 22345567999999998876653 346666664
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-08 Score=134.85 Aligned_cols=234 Identities=18% Similarity=0.178 Sum_probs=158.2
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEeccCccccccCcccCC
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD---QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRG 459 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D---g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~ 459 (2435)
...|.++|..+.. ...+..+...+...+|+|||++|+.+..+ ..|++||+.+++... +..+...+..+.|+|++
T Consensus 169 ~~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC
Confidence 3457777765432 23445567789999999999999887654 479999998886543 33344556678899999
Q ss_pred CeEEEEEeCCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC-C--eEEEEECCCCcEEEEEecCCCCE
Q psy4869 460 QLLIASGSDDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID-N--DIKMWDLRTNSVVQKLRGHSDTV 534 (2435)
Q Consensus 460 ~~llasgs~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d-g--~V~lwD~~s~~~v~~l~~h~~~V 534 (2435)
..++++.+.++ .|.+||+.++.......+........|+|+|+.|+..+.. + .|+++|+.+++. ..+..+...+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~ 324 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYN 324 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCc
Confidence 88877776655 5888898877544433444444567899999988876543 3 688889887764 3454456677
Q ss_pred EEEEEcCCCCEEEEEECCC---cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC---eEEEE
Q psy4869 535 TGLSLSPDGSYILSNAMDN---TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK---CVYIW 608 (2435)
Q Consensus 535 ~~i~~spdg~~las~s~Dg---~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg---~V~iw 608 (2435)
..+.|+|||++|+.++.++ .|.+||+.. .. ...+.... ......|+|||++|+..+.++ .+++.
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~----~~-~~~l~~~~-----~~~~p~~spdg~~l~~~~~~~~~~~l~~~ 394 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDG----GG-ERVLTDTG-----LDESPSFAPNGRMILYATTRGGRGVLGLV 394 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCC----CC-eEEccCCC-----CCCCceECCCCCEEEEEEeCCCcEEEEEE
Confidence 8899999999999888776 788888864 11 22222211 123458999999988877654 35555
Q ss_pred ECCCCcEEEEecCCCCCeeEEEE
Q psy4869 609 DTTTRRIAYKLPGHNGSVNDVQF 631 (2435)
Q Consensus 609 d~~s~~~~~~l~~h~~~V~~l~f 631 (2435)
+. +++....+..+.+.+..++|
T Consensus 395 ~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 395 ST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EC-CCceeeECCCCCCCcCCCCC
Confidence 53 45555555544555555444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.1e-08 Score=123.99 Aligned_cols=294 Identities=13% Similarity=0.040 Sum_probs=190.6
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccc
Q psy4869 936 GDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREA 1015 (2435)
Q Consensus 936 dg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~ 1015 (2435)
.+..|+++..+|.|+.+|..+|+++...........++... +..++.++.+|.|..+|.+.++..+..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~------------~~~v~v~~~~g~l~ald~~tG~~~W~~ 131 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD------------GGLVFVGTEKGEVIALDAEDGKELWRA 131 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc------------CCEEEEEcCCCEEEEEECCCCcEeeee
Confidence 46788899999999999999999887665443222222222 246788888999999998766543321
Q ss_pred cccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEE-----EEEE
Q psy4869 1016 DEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVL-----SLDM 1090 (2435)
Q Consensus 1016 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~-----sl~~ 1090 (2435)
. ..+.+.+.... .+..++++..+|.+..+|..+++.+..+......+. +...
T Consensus 132 ~----------------------~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~ 188 (377)
T TIGR03300 132 K----------------------LSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI 188 (377)
T ss_pred c----------------------cCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE
Confidence 1 11111111111 245677777799999999999888776653322111 1111
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCceeEEEeccC-C---C---EEEEEEcc--CCCEEEEEeCCCcEEEEeCCCcceeEE
Q psy4869 1091 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE-D---S---VTGVTFVP--KTHYFFTTSKDGRVKQWDADNFERIVT 1161 (2435)
Q Consensus 1091 spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~-~---~---V~~v~fsp--~~~~l~s~s~Dg~V~iwD~~~~~~~~~ 1161 (2435)
.+..++.+..+|.+..+|.++|+.+....... . . ...+.-.| .+..+++++.++.++.||..+++.+..
T Consensus 189 --~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 189 --ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred --ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 13467788889999999999998776543110 0 0 00010111 356788888999999999999877665
Q ss_pred EEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCC-CEEEEEEeeCCCEEEEEECCCcEEE
Q psy4869 1162 LHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQ 1240 (2435)
Q Consensus 1162 ~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~-~V~~i~~spd~~~lvsgs~Dg~I~v 1240 (2435)
.. ... ...... .+..+++++.||.|+.+|..+++.+........ ....... .+..|++++.+|.|.+
T Consensus 267 ~~----~~~----~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 267 RD----ASS----YQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHW 334 (377)
T ss_pred ec----cCC----ccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEE
Confidence 43 111 111222 467888888999999999999987755532211 2222222 4668999999999999
Q ss_pred EECCCCceEEEEeeCCccc--c--cCceEEEEEECCCeEEEE
Q psy4869 1241 WDADNFERIVTLHFNPNVY--L--PLQIQVVTGGGDKSVKLW 1278 (2435)
Q Consensus 1241 wD~~~~~~v~~~~~~~~~~--~--~~~~~lv~g~~d~~v~iw 1278 (2435)
+|..+++.+..+......+ . .....|+.++.||.|+.+
T Consensus 335 ~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 9999999988887655321 1 234468889999988776
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-08 Score=133.12 Aligned_cols=214 Identities=17% Similarity=0.143 Sum_probs=147.3
Q ss_pred CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEe--CCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEE
Q psy4869 427 QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGS--DDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs--~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l 504 (2435)
..|.++|.+ |.....+..|...+....|+|++..++.+.. .+..|.+||+.++...........+...+|+|||+.|
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 378899984 4445667778888999999999976655443 3468999999888765444556667789999999987
Q ss_pred EE-EecCC--eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEEcCCCCCCCceEEEEeCccc
Q psy4869 505 LT-GGIDN--DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM-DN--TVRIWDIRPYVPGERCVKVMSGHQH 578 (2435)
Q Consensus 505 ~s-gs~dg--~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~-Dg--~I~lWdl~~~~~~~~~v~~~~~h~~ 578 (2435)
+. .+.+| .|++||+.+++. ..+..+.+......|+|||++|+..+. ++ .|.+||+.. ... ..+..+.
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g----~~~-~~lt~~~- 333 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG----SNP-RRISFGG- 333 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC----CCe-EEeecCC-
Confidence 64 44454 488889988765 445556666778999999999987663 33 577777652 222 2222111
Q ss_pred ccccCeEEEEEcCCCCEEEEecCC---CeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCC------cEEE
Q psy4869 579 NFEKNLLRCAWSVSGLYVTAGSAD---KCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK------TIYL 649 (2435)
Q Consensus 579 ~~~~~i~~v~~spdg~~Lasgs~D---g~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg------~I~v 649 (2435)
.......|+|||++|+..+.+ ..|.+||...+.. ..+. +...+..+.|+||++.|+..+.++ .|++
T Consensus 334 ---~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 334 ---GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred ---CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 234557899999999887643 3688889865543 3332 233577889999999887765532 4555
Q ss_pred ecCC
Q psy4869 650 GESP 653 (2435)
Q Consensus 650 Wd~~ 653 (2435)
++++
T Consensus 409 ~dl~ 412 (435)
T PRK05137 409 VDLT 412 (435)
T ss_pred EECC
Confidence 5553
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-07 Score=115.45 Aligned_cols=278 Identities=13% Similarity=0.124 Sum_probs=179.9
Q ss_pred CcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEe----------CCCeEEEEEccCCceeecccccccceeEEEE
Q psy4869 906 SQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGT----------KDGRLLIVDIGAGEILEDIPAHSQELWSVAM 975 (2435)
Q Consensus 906 ~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~----------~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~ 975 (2435)
+.|.|.|..+++.+..++.+...+.+ ++||++.|+++. .+..|.|||.++++.+..++....+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p------ 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP------ 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc------
Confidence 78999999999999999988888876 999999998754 4788999999988888766422111
Q ss_pred ecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEE
Q psy4869 976 LPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL 1055 (2435)
Q Consensus 976 s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~L 1055 (2435)
.+.++ .....++++|||++|
T Consensus 100 ---------------~~~~~---------------------------------------------~~~~~~~ls~dgk~l 119 (352)
T TIGR02658 100 ---------------RFLVG---------------------------------------------TYPWMTSLTPDNKTL 119 (352)
T ss_pred ---------------hhhcc---------------------------------------------CccceEEECCCCCEE
Confidence 01110 112246889999999
Q ss_pred EEEEC--CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEcc-CCcee-EEEec-cC--CCEE
Q psy4869 1056 AVSLL--DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD-YGDCH-KSLLA-HE--DSVT 1128 (2435)
Q Consensus 1056 avg~~--dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~-t~~~~-~~l~~-h~--~~V~ 1128 (2435)
++... +..|.++|+.+++.+..+..-. ...-...+.+..+ .-+.||......++ +|+.. ....- +. ..+.
T Consensus 120 ~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~ 196 (352)
T TIGR02658 120 LFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI 196 (352)
T ss_pred EEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccc
Confidence 98873 5889999999998888776422 2222222222222 12344444443332 22211 11000 11 1110
Q ss_pred E-EEEcc-CCCEEEEEeCCCcEEEEeCCCcceeE--EEEEEEee----cccccCeEEEEEeCCCCEEEEEe---------
Q psy4869 1129 G-VTFVP-KTHYFFTTSKDGRVKQWDADNFERIV--TLHFFISL----YGHKLPVLSLDMSYDSTLIATGS--------- 1191 (2435)
Q Consensus 1129 ~-v~fsp-~~~~l~s~s~Dg~V~iwD~~~~~~~~--~~~~~~~~----~~h~~~V~~l~~s~dg~~l~sgs--------- 1191 (2435)
. -.|.+ +++++++... |.|.+.|+....... .+...... .-..+.+.-++++++++++++..
T Consensus 197 ~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 197 NHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred cCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccccc
Confidence 0 03455 7777766665 999999965432221 11111000 11344555699999999998853
Q ss_pred -CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCC-EEEEEE-CCCcEEEEECCCCceEEEE-eeC
Q psy4869 1192 -GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH-YFFTTS-KDGRVKQWDADNFERIVTL-HFN 1255 (2435)
Q Consensus 1192 -~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~-~lvsgs-~Dg~I~vwD~~~~~~v~~~-~~~ 1255 (2435)
..+.|.++|..+++.+..+.. ...+..|.++||++ .|++.. .++.|.++|..+.+.+..+ .+.
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg 342 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLG 342 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCC
Confidence 225799999999998888753 45899999999999 777666 5788999999999988887 443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-08 Score=131.88 Aligned_cols=235 Identities=17% Similarity=0.168 Sum_probs=154.3
Q ss_pred eEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC-C--eEEEEECCCCceEEEEeccCccccccCcccCCCe
Q psy4869 385 QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD-Q--TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQL 461 (2435)
Q Consensus 385 ~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-g--~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~ 461 (2435)
.|.++|..+... ..+..+...+....|+|||++|+..+.+ + .|++||+.+++... +...........|+|++..
T Consensus 199 ~l~i~d~dG~~~--~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE--QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc--eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence 566667655322 2344567789999999999998877643 2 58999998876532 2222223346789999988
Q ss_pred EEEEEeCCCe--EEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEec-C--CeEEEEECCCCcEEEEEecCCCCEEE
Q psy4869 462 LIASGSDDCT--VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI-D--NDIKMWDLRTNSVVQKLRGHSDTVTG 536 (2435)
Q Consensus 462 llasgs~Dg~--I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~-d--g~V~lwD~~s~~~v~~l~~h~~~V~~ 536 (2435)
++++.+.++. |.++|+.+++......+.......+|+|||++|+..+. + ..|+++|+.+++... +..+......
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcC
Confidence 8888777775 77778877765443344445677899999998877654 3 357778888876543 2222223445
Q ss_pred EEEcCCCCEEEEEEC-CCcEEE--EEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-C--eEEEEEC
Q psy4869 537 LSLSPDGSYILSNAM-DNTVRI--WDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-K--CVYIWDT 610 (2435)
Q Consensus 537 i~~spdg~~las~s~-Dg~I~l--Wdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-g--~V~iwd~ 610 (2435)
..|+|||++|+..+. ++...| +|+.. +.. ..+..... .....|+|||++|+..+.+ + .+++++.
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~----g~~-~~lt~~~~-----d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLET----GAM-QVLTSTRL-----DESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCC----CCe-EEccCCCC-----CCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 799999999887654 444444 56553 222 22222111 1234799999988776543 3 3777786
Q ss_pred CCCcEEEEecCCCCCeeEEEEcCC
Q psy4869 611 TTRRIAYKLPGHNGSVNDVQFHPK 634 (2435)
Q Consensus 611 ~s~~~~~~l~~h~~~V~~l~fspd 634 (2435)
+|+....+..+.+.+...+|+|-
T Consensus 425 -~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 425 -DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred -CCCceEECcCCCCCcCCCccCCC
Confidence 56666777777777888888873
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-09 Score=119.93 Aligned_cols=149 Identities=18% Similarity=0.405 Sum_probs=110.9
Q ss_pred eEEEEccCCCEEEEEeC---C-------CeEEEEECC-CCceEEEEec-cCccccccCcccCCCeEEEE-EeCCCeEEEE
Q psy4869 409 MDLKFSTDGCHIFTCST---D-------QTLAVWDLE-KGQRIKKMKG-HSTFVNSCDPVRRGQLLIAS-GSDDCTVKVW 475 (2435)
Q Consensus 409 ~~l~~s~dg~~L~s~s~---D-------g~I~vwd~~-tg~~v~~l~~-h~~~v~sv~~~~~~~~llas-gs~Dg~I~vw 475 (2435)
-.+.|+++|++|+.-.. | +...+|.++ .+..+..+.- ....|.+++|.|++..+++. |..+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35788898887765433 1 235555552 2344555543 23469999999999876544 5567899999
Q ss_pred eCCCCcceEeecCcccEEEEEECCCCCEEEEEec---CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC-
Q psy4869 476 DPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI---DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM- 551 (2435)
Q Consensus 476 D~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~---dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~- 551 (2435)
|++ .+.+..+. ...++.+.|+|+|++|++|+. .|.|.+||.++.+.+...+. ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 89 DVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred cCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEec
Confidence 997 55555554 457789999999999999875 46799999999988877652 34789999999999998764
Q ss_pred -----CCcEEEEEcC
Q psy4869 552 -----DNTVRIWDIR 561 (2435)
Q Consensus 552 -----Dg~I~lWdl~ 561 (2435)
|..++||+..
T Consensus 165 ~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ 179 (194)
T ss_pred cceeccccEEEEEec
Confidence 7888999985
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.4e-08 Score=124.31 Aligned_cols=292 Identities=13% Similarity=0.056 Sum_probs=193.1
Q ss_pred CCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeeccccc
Q psy4869 1094 STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKL 1173 (2435)
Q Consensus 1094 g~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~ 1173 (2435)
+..++.++.+|.|..+|..+|+.+............... ++..+++++.++.+..+|..+++.+..... ..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-------~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL-------SS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc-------Cc
Confidence 567888899999999999999988876644332222222 467788889999999999999888776531 12
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEE-----EEEEeeCCCEEEEEECCCcEEEEECCCCce
Q psy4869 1174 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT-----GVTFVPKTHYFFTTSKDGRVKQWDADNFER 1248 (2435)
Q Consensus 1174 ~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~-----~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~ 1248 (2435)
.+.+.-.. .+..++.+..++.|+.||.++|+.+..+......+. .... .+..++.+..++.+..+|.++++.
T Consensus 136 ~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 136 EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE
Confidence 22211111 345778888899999999999998776643322111 1111 234677888899999999998877
Q ss_pred EEEEeeCCc--------------ccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccccc
Q psy4869 1249 IVTLHFNPN--------------VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314 (2435)
Q Consensus 1249 v~~~~~~~~--------------~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1314 (2435)
+........ ........++.++.++.+..||....+.....+. .
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----------------------~ 270 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA----------------------S 270 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc----------------------C
Confidence 655432110 0011234677788899999999875543222110 0
Q ss_pred ccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE
Q psy4869 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK-LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1393 (2435)
Q Consensus 1315 ~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~-~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~ 1393 (2435)
... ....++..+.+++.+|.++.+|..+++.+....... ........ .+..|++++.||.|+++|..+|+++.+
T Consensus 271 -~~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 271 -SYQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred -Ccc--CceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 001 111346677788899999999999998776653221 11222222 467899999999999999999999988
Q ss_pred ecccccceEEEEEeeCCCEEEEEeCCCcEEEE
Q psy4869 1394 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1425 (2435)
Q Consensus 1394 ~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lW 1425 (2435)
++.+...+..--...+ +.|..++.||.|..|
T Consensus 346 ~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 346 LKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 8766544433333334 357788999988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-07 Score=107.50 Aligned_cols=271 Identities=12% Similarity=0.187 Sum_probs=187.3
Q ss_pred CCeEEEEecCCcee--eEEEeeCCCCCeeEEEEccCCCEEEEEeCC---CeEEEEECCC--CceEEE--EeccCcccccc
Q psy4869 383 DRQIFIWSVYGECE--NIGVMSGHTGAVMDLKFSTDGCHIFTCSTD---QTLAVWDLEK--GQRIKK--MKGHSTFVNSC 453 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~--~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D---g~I~vwd~~t--g~~v~~--l~~h~~~v~sv 453 (2435)
+.-|.+|++..... ....+..+.+.++-|+|++++++|+++-.+ |.|-.|.++. |+.... ..........+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46799999874322 222334567889999999999999998665 5676666653 543221 11222333567
Q ss_pred CcccCCCeEEEEEeCCCeEEEEeCCCC-cc---eEeecCccc----------EEEEEECCCCCEEEEEec-CCeEEEEEC
Q psy4869 454 DPVRRGQLLIASGSDDCTVKVWDPRKK-NQ---AVSMNNTYQ----------VTSVAFNDTAECVLTGGI-DNDIKMWDL 518 (2435)
Q Consensus 454 ~~~~~~~~llasgs~Dg~I~vwD~~~~-~~---~~~~~~~~~----------v~sv~~sp~g~~l~sgs~-dg~V~lwD~ 518 (2435)
++.++++.++.+.-.-|.|.++-++.. .. +....|... +....|.|++++|++.+- ..+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 788888888877777899999998652 22 222334333 788999999999998865 367999999
Q ss_pred CCCcEEEEEe---cCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcc--cccccCeEEEEEcCC
Q psy4869 519 RTNSVVQKLR---GHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQ--HNFEKNLLRCAWSVS 592 (2435)
Q Consensus 519 ~s~~~v~~l~---~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~--~~~~~~i~~v~~spd 592 (2435)
..|++...-. .....-..|.|+|++++.+... .+++|.+|........-+.++.+..-. .....+...+..++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9886543221 2345668899999999988765 599999999986422334444443221 122345678899999
Q ss_pred CCEEEEecC-CCeEEEEECC--CCcE--EEEecCCCCCeeEEEEcCCCCEEEEEECCC-cEEEecCC
Q psy4869 593 GLYVTAGSA-DKCVYIWDTT--TRRI--AYKLPGHNGSVNDVQFHPKEPIIMSASSDK-TIYLGESP 653 (2435)
Q Consensus 593 g~~Lasgs~-Dg~V~iwd~~--s~~~--~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg-~I~vWd~~ 653 (2435)
|+||.++.. ...|-+|.+. .+++ +....-+....+...|++.+++|++++.|+ .|.++.++
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 999999865 3477788765 3432 333444666688999999999999998774 78888876
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.2e-08 Score=127.75 Aligned_cols=235 Identities=14% Similarity=0.123 Sum_probs=155.9
Q ss_pred eEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEeccCccccccCcccCCCe
Q psy4869 385 QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD---QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQL 461 (2435)
Q Consensus 385 ~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D---g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~ 461 (2435)
.|.++|..+.. ...+..+...+....|+|||++|+..+.+ ..|.+||+.+++... +...........|+|++..
T Consensus 180 ~l~~~d~~g~~--~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR--AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC--ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 46677766542 23445667889999999999999877654 369999998886533 3323334456789999988
Q ss_pred EEEEEeCCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEec-C--CeEEEEECCCCcEEEEEecCCCCEEE
Q psy4869 462 LIASGSDDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI-D--NDIKMWDLRTNSVVQKLRGHSDTVTG 536 (2435)
Q Consensus 462 llasgs~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~-d--g~V~lwD~~s~~~v~~l~~h~~~V~~ 536 (2435)
++++...++ .|.+||+.++.......+........|+|||+.|+..+. + ..|+++|+.+++... +.........
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccc
Confidence 887776665 588889988765443344445567889999998876654 3 358888988876533 2222233445
Q ss_pred EEEcCCCCEEEEEECC-C--cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC---CeEEEEEC
Q psy4869 537 LSLSPDGSYILSNAMD-N--TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD---KCVYIWDT 610 (2435)
Q Consensus 537 i~~spdg~~las~s~D-g--~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D---g~V~iwd~ 610 (2435)
..|+|||++|+..+.+ + .|.+||+... .. ..+.... ......|+|||++|+..+.+ ..|.+++.
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg----~~-~~lt~~~-----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRG----SV-RILTDTS-----LDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCC----CE-EEccCCC-----CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 7899999999876643 3 4778887642 22 2222111 11235899999999877653 35777777
Q ss_pred CCCcEEEEecCCCCCeeEEEEcCC
Q psy4869 611 TTRRIAYKLPGHNGSVNDVQFHPK 634 (2435)
Q Consensus 611 ~s~~~~~~l~~h~~~V~~l~fspd 634 (2435)
. +.....+..+.+.+...+|+|-
T Consensus 406 ~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 406 N-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred C-CCceEECcCCCCCcCCCccCCC
Confidence 4 4444556556667777888764
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-08 Score=112.52 Aligned_cols=268 Identities=13% Similarity=0.169 Sum_probs=174.2
Q ss_pred CCeEEEEEccCCceee--cc-cccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEccccccccccccccccc
Q psy4869 946 DGRLLIVDIGAGEILE--DI-PAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDV 1022 (2435)
Q Consensus 946 dg~V~vwd~~sg~~v~--~~-~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~ 1022 (2435)
.|++.+|++.+.+.+- .+ ......+..+.|....-.++ -.++-+..+|.|.++..+....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~------~~l~~a~a~G~i~~~r~~~~~s----------- 107 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD------FNLLDAHARGQIQLYRNDEDES----------- 107 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCcc------ceeeeccccceEEEEeecccee-----------
Confidence 4677777777665432 11 11223556666654321111 1456667789999998642110
Q ss_pred ccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE--EEEEecCCcCEEEEEEcCC-CCEEEE
Q psy4869 1023 SRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF--FISLYGHKLPVLSLDMSYD-STLIAT 1099 (2435)
Q Consensus 1023 ~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~--~~~l~~h~~~V~sl~~spd-g~~L~S 1099 (2435)
.-.++.+....+... ...++.|++.+..++++..+|.+.+.+...... .+.++.|+.+++...|+.. .+++.+
T Consensus 108 ---s~~L~~ls~~ki~~~-~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 108 ---SVHLRGLSSKKISVV-EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred ---eeeecccchhhhhhe-eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe
Confidence 001111111111111 356788999999999999999999666554443 3478899999999999764 478999
Q ss_pred EECCCcEEEEEcc-CCceeEE-EeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCcc-eeEEEEEEEeecccccCe
Q psy4869 1100 GSGDRTVKVWGLD-YGDCHKS-LLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFE-RIVTLHFFISLYGHKLPV 1175 (2435)
Q Consensus 1100 gs~Dg~I~vWd~~-t~~~~~~-l~~h~~~V~~v~fsp-~~~~l~s~s~Dg~V~iwD~~~~~-~~~~~~~~~~~~~h~~~V 1175 (2435)
|+.|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.+|++|++|..|++||.++.. .+..- ...++|
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-------~v~GGV 256 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-------KVGGGV 256 (339)
T ss_pred cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-------ccccce
Confidence 9999999999998 4445544 456899999998887 67799999999999999999543 33221 345899
Q ss_pred EEEEEeCCCC-EEEEEeCCCcEEEEEccCCc-----eeeEeeccCCCEEEEEEeeCCCEEEEEE-CCCcEE-EE
Q psy4869 1176 LSLDMSYDST-LIATGSGDRTVKVWGLDYGD-----CHKSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVK-QW 1241 (2435)
Q Consensus 1176 ~~l~~s~dg~-~l~sgs~Dg~V~iwd~~t~~-----~~~~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~-vw 1241 (2435)
+.+.++|.-. .+..+++-+-.+|.+...+. .....+.|.+-+..-.|......|++++ .|+.++ +|
T Consensus 257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred EEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 9999998432 33334444447777765532 3344567887788888855555677766 455543 44
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-06 Score=107.23 Aligned_cols=281 Identities=13% Similarity=0.038 Sum_probs=179.0
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC----------CCcEEEEEccCCc
Q psy4869 1051 DSKLLAVSLLD-----TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG----------DRTVKVWGLDYGD 1115 (2435)
Q Consensus 1051 dg~~Lavg~~d-----g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~----------Dg~I~vWd~~t~~ 1115 (2435)
++..+++.... +.|.++|.++++.+..+..-..+-. + ++||++.|+.+.. +..|.+||..+++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 44555555443 7899999999999998875444433 4 8999998887655 7899999999999
Q ss_pred eeEEEeccC-------CCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCE
Q psy4869 1116 CHKSLLAHE-------DSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTL 1186 (2435)
Q Consensus 1116 ~~~~l~~h~-------~~V~~v~fsp~~~~l~s~s~--Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 1186 (2435)
.+..+.... ..-..++++|+|++|++... +..|.+.|+.+.+.+..+.. .....-...+.+..+
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-------p~~~~vy~t~e~~~~ 161 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-------PDCYHIFPTANDTFF 161 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-------CCCcEEEEecCCccE
Confidence 998886422 23458899999999998763 68999999999888877651 111111222222211
Q ss_pred EEEEeCCCcEEEEEccC-Cce-eeE---eec-----cCCCEEEEEEee-CCCEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1187 IATGSGDRTVKVWGLDY-GDC-HKS---LLA-----HEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1187 l~sgs~Dg~V~iwd~~t-~~~-~~~---~~~-----h~~~V~~i~~sp-d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
+-+.||......+.. |+. ... +.. ...+ .|.+ +++.+++... |.|.+.|+........
T Consensus 162 --~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~---- 230 (352)
T TIGR02658 162 --MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL---- 230 (352)
T ss_pred --EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceec----
Confidence 122344443333322 111 111 100 0122 3455 6766666555 8888888654332111
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee--
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-- 1333 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs-- 1333 (2435)
..|.+-.... ... ... .+.+.-++++|+++.+.+..
T Consensus 231 --------------------~~~~~~~~~~---~~~------------------~wr-P~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 231 --------------------PAIEAFTEAE---KAD------------------GWR-PGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred --------------------ceeeeccccc---ccc------------------ccC-CCcceeEEEcCCCCEEEEEecC
Confidence 1121110000 000 000 11222289999999888853
Q ss_pred --------cCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCceEEEe
Q psy4869 1334 --------LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST-LIATGS-GDRTVKVWGLDYGDCHKSL 1394 (2435)
Q Consensus 1334 --------~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~-~L~sGg-~Dg~V~iwdl~~gk~~~~~ 1394 (2435)
..+.|.++|..+++.+..+... ..+..++++||++ +|++.. .++.|.++|..+++.++..
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 2247999999999999888853 3788999999999 888766 5788999999999998876
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.2e-09 Score=128.90 Aligned_cols=283 Identities=20% Similarity=0.267 Sum_probs=196.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCC-CCCeeEEEEccCC---CEEEEEeCCCeEEEEECCCC
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGH-TGAVMDLKFSTDG---CHIFTCSTDQTLAVWDLEKG 437 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h-~~~V~~l~~s~dg---~~L~s~s~Dg~I~vwd~~tg 437 (2435)
.+.+.++.++|.|+-+|.++..|. .+-|+.....+...+..- .-.|-++.|++.. ..+++.+ ...-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcC
Confidence 356778899999999999988874 455665443333322211 2356778888743 2344444 344568887532
Q ss_pred ---ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe-e-cCcccEEEEEECCCCCEEEEEecCCe
Q psy4869 438 ---QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS-M-NNTYQVTSVAFNDTAECVLTGGIDND 512 (2435)
Q Consensus 438 ---~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~-~-~~~~~v~sv~~sp~g~~l~sgs~dg~ 512 (2435)
.....+.+|...+.++.|.++++.++++++-|..+..||+++...... . .-......|+|+.....+.+.+....
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 233456799999999999999999999999999999999998764333 2 34556778999876666666777888
Q ss_pred EEEEECCCC-cEEEEEecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEc
Q psy4869 513 IKMWDLRTN-SVVQKLRGHSDTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWS 590 (2435)
Q Consensus 513 V~lwD~~s~-~~v~~l~~h~~~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~s 590 (2435)
|.+||.+.| .++..+++|...|+.++|..- ...+++++.|++|+.||........+ +.......+..-++-
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~-------~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK-------RTVTTNFPIWRGRYL 254 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc-------eeccccCcceecccc
Confidence 999999975 678889999999999999863 55788999999999999874321111 111112244444555
Q ss_pred CCCC--EEEEecCCCeEEEE---------ECCC-CcEEEEecCCCCCeeEEEEcCC--------CC--EEEEEECCCcEE
Q psy4869 591 VSGL--YVTAGSADKCVYIW---------DTTT-RRIAYKLPGHNGSVNDVQFHPK--------EP--IIMSASSDKTIY 648 (2435)
Q Consensus 591 pdg~--~Lasgs~Dg~V~iw---------d~~s-~~~~~~l~~h~~~V~~l~fspd--------~~--~Lasgs~Dg~I~ 648 (2435)
|-|+ ++.---.+..+.++ +..+ .++++.+.||.+.|-...|-.. .+ +|++=+.|.+++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 5332 22222223344444 3333 3788999999999987777432 22 899999999999
Q ss_pred EecCC
Q psy4869 649 LGESP 653 (2435)
Q Consensus 649 vWd~~ 653 (2435)
+|-++
T Consensus 335 lWpI~ 339 (1081)
T KOG0309|consen 335 LWPID 339 (1081)
T ss_pred eeecc
Confidence 99986
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=7e-09 Score=128.48 Aligned_cols=206 Identities=24% Similarity=0.357 Sum_probs=160.1
Q ss_pred EecccCCcEEEEEECCCC-CEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 357 LLEGHGGEIFCSKYHPDG-QYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
+++||...|+.+.|+|+. ..+++++.|-.+..||++....++.....-......++|+--...+++.+..+.|++||.+
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 578999999999999964 5799999999999999998777777777667778899999866667777788899999998
Q ss_pred CC-ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC--cceEeecCcccEEEEEECCCCCE--EEEEecC
Q psy4869 436 KG-QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK--NQAVSMNNTYQVTSVAFNDTAEC--VLTGGID 510 (2435)
Q Consensus 436 tg-~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~--~~~~~~~~~~~v~sv~~sp~g~~--l~sgs~d 510 (2435)
.| .+++.+++|...++.++|...-...+.+.+.|++|++||-.+. +.........+|.--+|-|-|+- +.---.+
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~ 268 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG 268 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCC
Confidence 76 5788999999999999998777778899999999999997643 33344456677777777775542 2221222
Q ss_pred CeEEEEECCC----------CcEEEEEecCCCCEEEEEEcCC----------CCEEEEEECCCcEEEEEcCC
Q psy4869 511 NDIKMWDLRT----------NSVVQKLRGHSDTVTGLSLSPD----------GSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 511 g~V~lwD~~s----------~~~v~~l~~h~~~V~~i~~spd----------g~~las~s~Dg~I~lWdl~~ 562 (2435)
..|.+++.++ .++++.+.||.+.|...-|-.. .-.|++-|.|.++|+|-+..
T Consensus 269 n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 269 NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 3555555442 4678999999998876655442 23699999999999999873
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-08 Score=122.66 Aligned_cols=191 Identities=14% Similarity=0.185 Sum_probs=150.9
Q ss_pred CCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeec--------------------CCCCeEE
Q psy4869 33 NQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPN--------------------HDSSQLA 91 (2435)
Q Consensus 33 ~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~--------------------~d~~~la 91 (2435)
+|-+.|+|.. .+|.++|||..+.+.... +.+...-....++..|. .|-..+|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e-------~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv 74 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQE-------FAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV 74 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeee-------eccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence 4567788886 899999999987753321 11111111112233333 3444688
Q ss_pred EEEcCCeEEEEECCCCCeEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEee
Q psy4869 92 VAYTNGSLKTFSLDTTDVISTFT--GHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS 169 (2435)
Q Consensus 92 v~~~~G~i~i~d~~~~~~~~~l~--gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~ 169 (2435)
-|...|.|.+|++..++.-..+. +|.+.|+++.++.+-..|.|++.|+.+..|+......++.+.+-...+.++..+|
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP 154 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC
Confidence 88889999999999999888876 4999999999998889999999999999999999999999999999999999986
Q ss_pred cCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeC-----CCeEE-EeeCCCcEEEEEcCC
Q psy4869 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRE-----DSYLI-SGSNDAELKVWNVRD 234 (2435)
Q Consensus 170 ~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~-----~~~l~-s~s~Dg~v~vwdl~~ 234 (2435)
+ +..|+++ .++|++||+++++.+.+|.+|.++|.++.|-.. |.+++ +...+.-+.+|-++.
T Consensus 155 D--~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 D--GKILLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred C--CCEEEec--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5 5566665 578999999999999999999999999999876 66655 456666677887664
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-05 Score=93.59 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=138.0
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec------CCcC--EEE---E-EEcC-CCCEEEEEECCCcEEEEEccC
Q psy4869 1047 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG------HKLP--VLS---L-DMSY-DSTLIATGSGDRTVKVWGLDY 1113 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~------h~~~--V~s---l-~~sp-dg~~L~Sgs~Dg~I~vWd~~t 1113 (2435)
-.+.||+.++-.. .|.|.+||.++.+....--+ ...+ +.- + .|++ +|++++..+. |...|.+...
T Consensus 273 ~~nsDGkrIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 273 NANSDGKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred ccCCCCcEEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence 3456788777654 68899998765433221111 1111 111 1 1232 5677776664 4566665544
Q ss_pred CceeEEEeccCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeC
Q psy4869 1114 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG-RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG 1192 (2435)
Q Consensus 1114 ~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg-~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 1192 (2435)
+-.++ .+|...|.-..+.-+++-++.|..|| .+-+||.+.++.... ...-+.|.++..+++|++++++-.
T Consensus 351 ~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-------e~~lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 351 GYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-------EKDLGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred CeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-------eCCccceEEEEEcCCCcEEEEEcC
Confidence 43322 24677788888888888899999999 899999988754332 356788999999999999999999
Q ss_pred CCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCC----cEEEEECCCCceEEEE
Q psy4869 1193 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG----RVKQWDADNFERIVTL 1252 (2435)
Q Consensus 1193 Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg----~I~vwD~~~~~~v~~~ 1252 (2435)
...+.++|+++|+....-+...+-|+.+.|+|++++|+-+--+| .|+++|....+.....
T Consensus 422 r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 422 RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 99999999999996655566778999999999999999876655 6899999876654433
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-09 Score=140.79 Aligned_cols=192 Identities=16% Similarity=0.323 Sum_probs=157.5
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK 436 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t 436 (2435)
.++.|-..|.++.-+|...+.++|+.||.|++|....+......-..-...|+.+.|+.+|..+..+..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 4556667888999999999999999999999999876544433333344899999999999999999999999999985
Q ss_pred CceEEEEeccCccccccCcccCCCeEEEEE---eCCCeEEEEeCCC--CcceEeecCcccEEEEEECCCCCEEEEEecCC
Q psy4869 437 GQRIKKMKGHSTFVNSCDPVRRGQLLIASG---SDDCTVKVWDPRK--KNQAVSMNNTYQVTSVAFNDTAECVLTGGIDN 511 (2435)
Q Consensus 437 g~~v~~l~~h~~~v~sv~~~~~~~~llasg---s~Dg~I~vwD~~~--~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg 511 (2435)
.++....+.|.....++.|.. .+++++ ++++.+.+||... .......-|...++++++.|..+.|++|+.+|
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence 677778888998888888876 234444 4578999999653 22333356888999999999999999999999
Q ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 512 DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
.|++||++..+++++++. +. ...++++|+..|.++||++..
T Consensus 2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccc
Confidence 999999999988887765 33 567899999999999999984
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-07 Score=121.99 Aligned_cols=206 Identities=17% Similarity=0.132 Sum_probs=141.9
Q ss_pred CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC--CeEEEEeCCCCcceEeecCcccEEEEEECCCCCEE
Q psy4869 427 QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD--CTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D--g~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l 504 (2435)
..|.++|...+ ....+..+...+....|+|++..++.+...+ ..|.+||+.+++..........+.+++|+|+|+.|
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 35888887543 3455556666788889999998776654433 57999999887665544555567789999999987
Q ss_pred EEE-ecCC--eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEEcCCCCCCCceEEEEeCccc
Q psy4869 505 LTG-GIDN--DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM-DN--TVRIWDIRPYVPGERCVKVMSGHQH 578 (2435)
Q Consensus 505 ~sg-s~dg--~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~-Dg--~I~lWdl~~~~~~~~~v~~~~~h~~ 578 (2435)
+.. +.++ .|++||+.+++. ..+..+........|+|||++|+..+. ++ .|.+||+.. .+. ..+..+.
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~----~~~-~~l~~~~- 321 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG----GEV-RRLTFRG- 321 (417)
T ss_pred EEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC----CCE-EEeecCC-
Confidence 754 4343 599999988754 344445555567899999999887654 34 566667653 222 2222221
Q ss_pred ccccCeEEEEEcCCCCEEEEecCCC---eEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 579 NFEKNLLRCAWSVSGLYVTAGSADK---CVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 579 ~~~~~i~~v~~spdg~~Lasgs~Dg---~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
.......|+|+|++|+.++.++ .|.+||+.++... .+..+ .......|+|++++|+..+.++
T Consensus 322 ---~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 322 ---GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ---CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 2345678999999999988776 8999999886543 33222 2345678999999888877665
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.6e-08 Score=118.43 Aligned_cols=188 Identities=14% Similarity=0.200 Sum_probs=150.7
Q ss_pred cCCCeEEEEEeCCCeEEEEeCCCCcceEeec----CcccEEEEEE------CC--------------CCCEEEEEecCCe
Q psy4869 457 RRGQLLIASGSDDCTVKVWDPRKKNQAVSMN----NTYQVTSVAF------ND--------------TAECVLTGGIDND 512 (2435)
Q Consensus 457 ~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~----~~~~v~sv~~------sp--------------~g~~l~sgs~dg~ 512 (2435)
|....++|....||.+++||....+....+. ..+...+..| +| +-..++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3444678889999999999998877666553 2223333333 22 3346888899999
Q ss_pred EEEEECCCCcEEEEEe--cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEc
Q psy4869 513 IKMWDLRTNSVVQKLR--GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWS 590 (2435)
Q Consensus 513 V~lwD~~s~~~v~~l~--~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~s 590 (2435)
|.+|++..++....+. .|.+.|+++.++.+-..|.+++.|+.+..|+.. ..+.+..+.... ..+.+++.+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~----~~~~~~~~~~~~----~~~~sl~is 153 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK----EKVIIRIWKEQK----PLVSSLCIS 153 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc----cceeeeeeccCC----CccceEEEc
Confidence 9999999999988885 699999999999999999999999999999987 345566665543 356889999
Q ss_pred CCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCC-----CC-EEEEEECCCcEEEecCCC
Q psy4869 591 VSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPK-----EP-IIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 591 pdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd-----~~-~Lasgs~Dg~I~vWd~~~ 654 (2435)
|||+.|++++ +.|++||+++++.+..+.||.++|+++.|--+ |. +|.+...+..+.+|.++.
T Consensus 154 ~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 154 PDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999886 68999999999999999999999999999876 44 555566677788888763
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.3e-06 Score=97.69 Aligned_cols=271 Identities=11% Similarity=0.177 Sum_probs=180.2
Q ss_pred ecccCCcEEEEEECCCCCEEEEEeC---CCeEEEEecCCc--eee-EEEeeCCCCCeeEEEEccCCCEEEEEeC-CCeEE
Q psy4869 358 LEGHGGEIFCSKYHPDGQYIASSGY---DRQIFIWSVYGE--CEN-IGVMSGHTGAVMDLKFSTDGCHIFTCST-DQTLA 430 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~~Lasgs~---Dg~I~iwd~~~~--~~~-~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~ 430 (2435)
+-.+.+..+-|+|+|++++|.++-. +|.|..|.+... ... +.....-..+-..++++++|++|+++.. -|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3356677889999999999988854 577888877642 221 1111122234488999999999998876 57899
Q ss_pred EEECCC-CceEE--EEeccCcc----------ccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceE----eecCcccEE
Q psy4869 431 VWDLEK-GQRIK--KMKGHSTF----------VNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV----SMNNTYQVT 493 (2435)
Q Consensus 431 vwd~~t-g~~v~--~l~~h~~~----------v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~----~~~~~~~v~ 493 (2435)
++-++. |.... .+..|... +....+.|+++.+++..-.--.|.+|++..++... .+.......
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 999865 43221 11223332 66777889998877776666679999998655332 235666788
Q ss_pred EEEECCCCCEEEEEec-CCeEEEEECCCC-cEEEEEec---------CCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcC
Q psy4869 494 SVAFNDTAECVLTGGI-DNDIKMWDLRTN-SVVQKLRG---------HSDTVTGLSLSPDGSYILSNAM-DNTVRIWDIR 561 (2435)
Q Consensus 494 sv~~sp~g~~l~sgs~-dg~V~lwD~~s~-~~v~~l~~---------h~~~V~~i~~spdg~~las~s~-Dg~I~lWdl~ 561 (2435)
-|.|+|++++.++.++ +++|.+|+.... ..+..++. -......|..++||++|+++.. ...|-+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9999999999988765 899999998873 33333321 2346788999999999998774 4578888887
Q ss_pred CCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC-eEEEEE--CCCCcEEEEec-CCCCCeeEEEEc
Q psy4869 562 PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK-CVYIWD--TTTRRIAYKLP-GHNGSVNDVQFH 632 (2435)
Q Consensus 562 ~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg-~V~iwd--~~s~~~~~~l~-~h~~~V~~l~fs 632 (2435)
.....-..+.....+ ........|+++|++|++...++ +|.+|. .++|++-.... .......||.|.
T Consensus 275 ~~~g~L~~~~~~~te----g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 275 PDGGKLELVGITPTE----GQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCEEEEEEEeccC----CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 432111122222222 12356789999999999988754 577775 45776644333 244555666664
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-07 Score=118.59 Aligned_cols=219 Identities=13% Similarity=0.075 Sum_probs=138.0
Q ss_pred eEEEEECCCCceEEEEeccCccccccCcccCCCeE--EEEEeCCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCE
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLL--IASGSDDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAEC 503 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~l--lasgs~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~ 503 (2435)
.|.+.|.+.++. +.+.........-.|+|++..+ +.+...++ .|.+.++..++..............+|+|||+.
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 577777755543 3344444455677899998753 22444443 577778887765554445555667899999998
Q ss_pred EEEEec-----CCeEEEEECCCC---cEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEe
Q psy4869 504 VLTGGI-----DNDIKMWDLRTN---SVVQKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMS 574 (2435)
Q Consensus 504 l~sgs~-----dg~V~lwD~~s~---~~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~ 574 (2435)
|+.... +..+.+||+..+ +......++.+.....+|+|||+.|+..+ .+|...||.+.... .......+.
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~-~g~~~~~lt 323 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP-EGQSPRLLT 323 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc-cccceEEec
Confidence 886553 223445777653 33333333334456789999999888665 57766666543211 111122232
Q ss_pred CcccccccCeEEEEEcCCCCEEEEecCC---CeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEEC---CCcEE
Q psy4869 575 GHQHNFEKNLLRCAWSVSGLYVTAGSAD---KCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASS---DKTIY 648 (2435)
Q Consensus 575 ~h~~~~~~~i~~v~~spdg~~Lasgs~D---g~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~---Dg~I~ 648 (2435)
.+. ..+....|+|||++|+..+.+ ..|.+||+.+++..... .....+....|+||++.|+.... +..|+
T Consensus 324 ~~~----~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 324 KKY----RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred cCC----CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 221 234568999999998876543 47999999988764433 33456778999999998775443 24577
Q ss_pred EecCC
Q psy4869 649 LGESP 653 (2435)
Q Consensus 649 vWd~~ 653 (2435)
+|+++
T Consensus 399 ~vdl~ 403 (428)
T PRK01029 399 LISLI 403 (428)
T ss_pred EEECC
Confidence 77765
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.7e-07 Score=100.72 Aligned_cols=225 Identities=12% Similarity=0.061 Sum_probs=151.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEE-eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCc-ccEEE
Q psy4869 417 GCHIFTCSTDQTLAVWDLEKGQRIKKM-KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT-YQVTS 494 (2435)
Q Consensus 417 g~~L~s~s~Dg~I~vwd~~tg~~v~~l-~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~-~~v~s 494 (2435)
..+|+.|+..|...+|...+.+....+ ..|...|.-+.-..+....+..++.|.++++.++..+......... -.+++
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 447889999999999999866543332 3333333222222233344556788888888887654433333221 34889
Q ss_pred EEECCCCCEEEEEecCCeEEEEECCCC-cEEEE--EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEE
Q psy4869 495 VAFNDTAECVLTGGIDNDIKMWDLRTN-SVVQK--LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVK 571 (2435)
Q Consensus 495 v~~sp~g~~l~sgs~dg~V~lwD~~s~-~~v~~--l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~ 571 (2435)
+++++|++++++.+....|..|.+... +.+.. ....++.-.+..|+.....+|++..||++.|||+|... .+..
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~---tpm~ 240 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA---TPMA 240 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc---cchh
Confidence 999999999999999999999998753 33322 33445566789999999999999999999999999643 2222
Q ss_pred EEeCcccccccCeEEEEEcCCC--CEEEEecCCCeEEEEECCCCcEEEEecC-------CCC-CeeEEEEcCCCCEEEEE
Q psy4869 572 VMSGHQHNFEKNLLRCAWSVSG--LYVTAGSADKCVYIWDTTTRRIAYKLPG-------HNG-SVNDVQFHPKEPIIMSA 641 (2435)
Q Consensus 572 ~~~~h~~~~~~~i~~v~~spdg--~~Lasgs~Dg~V~iwd~~s~~~~~~l~~-------h~~-~V~~l~fspd~~~Lasg 641 (2435)
..........+.+..|.|++.| .+|+..-.-+.+.+.|+++++-...+.- |.. .|..-.|+.++.-+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 2222222234688999999876 4566666778999999999876554422 332 37777777776655555
Q ss_pred ECC
Q psy4869 642 SSD 644 (2435)
Q Consensus 642 s~D 644 (2435)
+++
T Consensus 321 ~e~ 323 (344)
T KOG4532|consen 321 NEL 323 (344)
T ss_pred cch
Confidence 544
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.8e-08 Score=108.73 Aligned_cols=196 Identities=20% Similarity=0.195 Sum_probs=149.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecC-CceeeEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECC-CCceE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQTLAVWDLE-KGQRI 440 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~-~~~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~-tg~~v 440 (2435)
...++.|++.+..++++..+|.+.+-+.. ...+....++.|.-.++-..|+. +.+.+++|++|+.+..||++ .++.+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 35678999999999999999999855433 33344557889999999999986 45689999999999999998 44444
Q ss_pred EE-EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCC-CCcceEeecCcccEEEEEECCCCC-EEEEEecCCeEEEEE
Q psy4869 441 KK-MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR-KKNQAVSMNNTYQVTSVAFNDTAE-CVLTGGIDNDIKMWD 517 (2435)
Q Consensus 441 ~~-l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~-~~~~~~~~~~~~~v~sv~~sp~g~-~l~sgs~dg~V~lwD 517 (2435)
.. .+-|...|.++.-+|..+..+++|+.|..|++||.| -++++..-...+.|..+..+|.-. .++.+..-...+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 44 567888999999999999999999999999999999 677777778889999999998533 223333344456666
Q ss_pred CCCC--c---EEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEE-EEE
Q psy4869 518 LRTN--S---VVQKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVR-IWD 559 (2435)
Q Consensus 518 ~~s~--~---~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~-lWd 559 (2435)
...+ + .....+.|.+-++.-+|......|++++ .|+.++ +|-
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 6543 2 2344567888888888865566788876 477655 664
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=112.09 Aligned_cols=242 Identities=19% Similarity=0.354 Sum_probs=165.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce----eeEEEeeCCC------------CCeeEEEEccCCC--EEEEE
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC----ENIGVMSGHT------------GAVMDLKFSTDGC--HIFTC 423 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~----~~~~~l~~h~------------~~V~~l~~s~dg~--~L~s~ 423 (2435)
...|+++.|...|.||++|...|+|.+|.-.... +.+..+++|. ..|..|.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999654321 1223344443 4688999987543 57788
Q ss_pred eCCCeEEEEECCCCc-------------------e------------------E-----EEE-eccCccccccCcccCCC
Q psy4869 424 STDQTLAVWDLEKGQ-------------------R------------------I-----KKM-KGHSTFVNSCDPVRRGQ 460 (2435)
Q Consensus 424 s~Dg~I~vwd~~tg~-------------------~------------------v-----~~l-~~h~~~v~sv~~~~~~~ 460 (2435)
+.|++|++|.+.... + + +.. ..|.-.++++.+..+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999875320 0 0 001 23555677777766654
Q ss_pred eEEEEEeCCCeEEEEeCCCCcceEee----cC-----cccEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEE------
Q psy4869 461 LLIASGSDDCTVKVWDPRKKNQAVSM----NN-----TYQVTSVAFNDT-AECVLTGGIDNDIKMWDLRTNSVV------ 524 (2435)
Q Consensus 461 ~llasgs~Dg~I~vwD~~~~~~~~~~----~~-----~~~v~sv~~sp~-g~~l~sgs~dg~V~lwD~~s~~~v------ 524 (2435)
.++ .++|-.|.+|.+........+ ++ ..-|++..|+|. .+.+.-.+..|.|++.|+|...+.
T Consensus 186 t~l--SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL--SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee--eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 443 467889999998754432222 12 224788899995 456666788999999999943221
Q ss_pred E----------EEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccc--------c---C
Q psy4869 525 Q----------KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE--------K---N 583 (2435)
Q Consensus 525 ~----------~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~--------~---~ 583 (2435)
. -+.+-...|..+.|+++|+++++-+. -+|+|||+++ ...++.++.-|....+ . .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm---~k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM---AKNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc---ccCCceeechHHHHHHHHHhhhhccceee
Confidence 1 11223357888999999999998654 5899999986 4667777754432110 1 1
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEE
Q psy4869 584 LLRCAWSVSGLYVTAGSADKCVYIWD 609 (2435)
Q Consensus 584 i~~v~~spdg~~Lasgs~Dg~V~iwd 609 (2435)
-..+.||.|.+.+++|+..+..-||-
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred eEEEEecCCcccccccccccceeeec
Confidence 25688999999999999888777665
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.8e-07 Score=118.61 Aligned_cols=211 Identities=13% Similarity=0.066 Sum_probs=139.8
Q ss_pred eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC--CeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEE
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD--CTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVL 505 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D--g~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~ 505 (2435)
.|.++|.+.++ ...+..+...+....|+|++..++.+...+ ..|.+||+.+++..........+...+|+|||+.|+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 47788886544 455556667788889999997776655443 368899998876544434444556789999999887
Q ss_pred EE-ecCC--eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEEcCCCCCCCceEEE-EeCccc
Q psy4869 506 TG-GIDN--DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM-DN--TVRIWDIRPYVPGERCVKV-MSGHQH 578 (2435)
Q Consensus 506 sg-s~dg--~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~-Dg--~I~lWdl~~~~~~~~~v~~-~~~h~~ 578 (2435)
.. ..+| .|++||+.+++.. .+..+........|+|||+.|+..+. ++ .|.++|+.. ++.... +.+.
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~----g~~~~lt~~~~-- 331 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG----GRAERVTFVGN-- 331 (430)
T ss_pred EEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC----CCEEEeecCCC--
Confidence 54 4444 6899999988653 45555556677899999998876653 44 466667653 222211 1111
Q ss_pred ccccCeEEEEEcCCCCEEEEecCC-C--eEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEecC
Q psy4869 579 NFEKNLLRCAWSVSGLYVTAGSAD-K--CVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSD-K--TIYLGES 652 (2435)
Q Consensus 579 ~~~~~i~~v~~spdg~~Lasgs~D-g--~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~D-g--~I~vWd~ 652 (2435)
......|+|||++|+..+.+ + .|.+||+.+++..... +........|+|||++|+..+.+ | .|+++++
T Consensus 332 ----~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 332 ----YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred ----CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 22356899999999877643 3 5888999888653322 22233356899999988776654 3 3555544
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.9e-07 Score=118.86 Aligned_cols=220 Identities=17% Similarity=0.224 Sum_probs=138.9
Q ss_pred ecccCCcEEEEEECCCCCEEEEEeCC-C--eEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEE-EeCCC--eEEE
Q psy4869 358 LEGHGGEIFCSKYHPDGQYIASSGYD-R--QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFT-CSTDQ--TLAV 431 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~~Lasgs~D-g--~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s-~s~Dg--~I~v 431 (2435)
+..+...+....|+|||++|+..+.+ + .|.+||+.++... .+....+.....+|+|||+.|+. ...++ .|++
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 34556788899999999998876543 3 5888888754322 12222334457899999998875 45555 4888
Q ss_pred EECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCe--EEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEec
Q psy4869 432 WDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT--VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI 509 (2435)
Q Consensus 432 wd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~--I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~ 509 (2435)
+|+++++. ..+..+........|+|++..++.+...++. |.++|+.+++..............+|+|||++|+..+.
T Consensus 291 ~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 291 VDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred EECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence 89987764 4444455556678899999888777665554 56667766654332222223345789999999887655
Q ss_pred C-C--eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCc--EEEEEcCCCCCCCceEEEEeCcccccccC
Q psy4869 510 D-N--DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM-DNT--VRIWDIRPYVPGERCVKVMSGHQHNFEKN 583 (2435)
Q Consensus 510 d-g--~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~-Dg~--I~lWdl~~~~~~~~~v~~~~~h~~~~~~~ 583 (2435)
+ + .|.++|+.+++.. .+... .......|+|||++|+..+. ++. +.++++. ++....+..+. ..
T Consensus 370 ~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-----G~~~~~l~~~~----g~ 438 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-----GRFKARLPAGQ----GE 438 (448)
T ss_pred cCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-----CCceEECcCCC----CC
Confidence 3 3 5677898888653 33222 12234589999999886554 444 5555653 33333343321 23
Q ss_pred eEEEEEcC
Q psy4869 584 LLRCAWSV 591 (2435)
Q Consensus 584 i~~v~~sp 591 (2435)
+...+|+|
T Consensus 439 ~~~p~Wsp 446 (448)
T PRK04792 439 VKSPAWSP 446 (448)
T ss_pred cCCCccCC
Confidence 44567776
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.6e-08 Score=132.87 Aligned_cols=198 Identities=17% Similarity=0.232 Sum_probs=164.7
Q ss_pred ccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEe-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCce
Q psy4869 1038 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1116 (2435)
Q Consensus 1038 ~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~-~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~ 1116 (2435)
..-..|.++.-+|...+.++|+.||.|++|....++.+..+. .....|+.+.|+..|+.+..+..||.+.+|... .+.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence 345678899999999999999999999999998888777764 234889999999999999999999999999987 666
Q ss_pred eEEEeccCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC
Q psy4869 1117 HKSLLAHEDSVTGVTFVPKTHYFFTTS---KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1193 (2435)
Q Consensus 1117 ~~~l~~h~~~V~~v~fsp~~~~l~s~s---~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 1193 (2435)
....+.|.....+++|-. ..+++.+ .++.+.+||..-......++ ..|.+.++++++.|....|++|+.+
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-----~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-----TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-----eecCCCceEEEEcCcceEEEecCCc
Confidence 777788999999999975 5566654 46789999976544444443 5799999999999999999999999
Q ss_pred CcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEe
Q psy4869 1194 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1253 (2435)
Q Consensus 1194 g~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~ 1253 (2435)
|.|++||++..+++..++. ++ ...+|++|+..|.++||++..+..+..+.
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999998887766654 44 67789999999999999999876665543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-06 Score=113.86 Aligned_cols=198 Identities=13% Similarity=0.081 Sum_probs=126.4
Q ss_pred cCCcEEEEEECCCCCE--E-EEEeCCC--eEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC-----CCeEE
Q psy4869 361 HGGEIFCSKYHPDGQY--I-ASSGYDR--QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST-----DQTLA 430 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~--L-asgs~Dg--~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-----Dg~I~ 430 (2435)
+...+..-+|+|||+. + ++...+| .|.+.++.++... .+....+.....+|+|||++|+..+. |..+.
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~--~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK--KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce--EeecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 4445667799999975 2 2444444 5677777654322 22233445567899999998887653 22345
Q ss_pred EEECCCC---ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEe--CCC-CcceEee-cCcccEEEEEECCCCCE
Q psy4869 431 VWDLEKG---QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWD--PRK-KNQAVSM-NNTYQVTSVAFNDTAEC 503 (2435)
Q Consensus 431 vwd~~tg---~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD--~~~-~~~~~~~-~~~~~v~sv~~sp~g~~ 503 (2435)
+|++..+ +......++........|+|++..++.+...++...+|. +.. +.....+ .....+....|+|||+.
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 5777653 333333333334456789999988777776677655554 432 2222333 23345678899999999
Q ss_pred EEEEecC---CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEEcC
Q psy4869 504 VLTGGID---NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM---DNTVRIWDIR 561 (2435)
Q Consensus 504 l~sgs~d---g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~---Dg~I~lWdl~ 561 (2435)
|+....+ ..|++||+.+++... +......+....|+|||++|+.... +..|.+||+.
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 8876543 469999999887643 3333345678999999998875433 3567788876
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-08 Score=118.34 Aligned_cols=280 Identities=16% Similarity=0.243 Sum_probs=189.1
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCcee------eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE------NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTL 429 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~------~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I 429 (2435)
..+.||...|..++--.+.+-+++++.|.+|++|.++.+.. ....+..|+.+|.++.|-.+-++++++ ||.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 46889999999988777888999999999999999874321 234567899999999999887777665 8999
Q ss_pred EEEECCCCceEEEEec---c--CccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec------CcccEEEEEEC
Q psy4869 430 AVWDLEKGQRIKKMKG---H--STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN------NTYQVTSVAFN 498 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l~~---h--~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~------~~~~v~sv~~s 498 (2435)
++||.--|+.+..+.. | ...|.++. +-+...+++.++...+|+++|.+..+....+. ...-+.+++..
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999877765543321 2 22233322 11333455556889999999999887666552 33568899999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEE-EEcCCCCCCCceEEEEeCcc
Q psy4869 499 DTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRI-WDIRPYVPGERCVKVMSGHQ 577 (2435)
Q Consensus 499 p~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~l-Wdl~~~~~~~~~v~~~~~h~ 577 (2435)
+.|+.+++|-..|.|.+.|.++|+.+..++...-....++ .|..+.|+....|.++.+ |-.-. +......+...
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald----gimh~q~kppp 960 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD----GIMHLQDKPPP 960 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC----CeeeeccCCCC
Confidence 9999999999999999999999999988876554443333 255667777777888888 76432 11111111000
Q ss_pred cccccCeEEEEEcCCCCEEEEecCCCeEEEEECC-C---CcEEEEec--CCCCCeeEEEEcCCCCEEEEEECCCcEEE
Q psy4869 578 HNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT-T---RRIAYKLP--GHNGSVNDVQFHPKEPIIMSASSDKTIYL 649 (2435)
Q Consensus 578 ~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~-s---~~~~~~l~--~h~~~V~~l~fspd~~~Lasgs~Dg~I~v 649 (2435)
. + .. -.-.-|.-|++.-..+.+.||--. . ...+..+. .-.+..++++.-|-+.-+..|...|.|.+
T Consensus 961 e----p-ah-flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 961 E----P-AH-FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred c----c-hh-hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 0 0 00 001124556666666777777421 1 11112222 23467788888888888888888888875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.8e-06 Score=116.79 Aligned_cols=243 Identities=12% Similarity=0.114 Sum_probs=162.6
Q ss_pred EEEECCC-CCEEEEEeCCCeEEEEecCCceeeEEEeeC------------CCCCeeEEEEccCCCEEEEEeC-CCeEEEE
Q psy4869 367 CSKYHPD-GQYIASSGYDRQIFIWSVYGECENIGVMSG------------HTGAVMDLKFSTDGCHIFTCST-DQTLAVW 432 (2435)
Q Consensus 367 ~l~fspd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~------------h~~~V~~l~~s~dg~~L~s~s~-Dg~I~vw 432 (2435)
.++++++ |+++++-...++|++||..+.......-.+ +-.....|++++++..|+.+.. .+.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 5778775 567777778889999998654322111111 1124688999998887766654 5689999
Q ss_pred ECCCCceEEEEecc-----------------CccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec--------
Q psy4869 433 DLEKGQRIKKMKGH-----------------STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-------- 487 (2435)
Q Consensus 433 d~~tg~~v~~l~~h-----------------~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-------- 487 (2435)
|..++. +..+.+- -.....+++.+.+..++++...++.|++||...+.......
T Consensus 652 d~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~ 730 (1057)
T PLN02919 652 DFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLN 730 (1057)
T ss_pred ecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCC
Confidence 987654 4443221 01224577788677888888899999999987664422110
Q ss_pred -------CcccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEEEec-------------C--------CCCEEEEE
Q psy4869 488 -------NTYQVTSVAFNDTAECVLTG-GIDNDIKMWDLRTNSVVQKLRG-------------H--------SDTVTGLS 538 (2435)
Q Consensus 488 -------~~~~v~sv~~sp~g~~l~sg-s~dg~V~lwD~~s~~~v~~l~~-------------h--------~~~V~~i~ 538 (2435)
.-.....++++|+|+.|+++ ..++.|++||+.++.......+ + -....+|+
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 11245679999999866555 5568999999987653211100 1 11236899
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccc----------ccccCeEEEEEcCCCCEEEEecCCCeEEEE
Q psy4869 539 LSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH----------NFEKNLLRCAWSVSGLYVTAGSADKCVYIW 608 (2435)
Q Consensus 539 ~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~----------~~~~~i~~v~~spdg~~Lasgs~Dg~V~iw 608 (2435)
++++|+.+++-+.+++|++||... .. +..+.+... ..-.....++++++|+.+++-+.++.|++|
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~t----g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPAT----KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCC----Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 999999988889999999999863 22 222222110 001245789999999999999999999999
Q ss_pred ECCCCcE
Q psy4869 609 DTTTRRI 615 (2435)
Q Consensus 609 d~~s~~~ 615 (2435)
|+.+++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9988765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.9e-06 Score=106.96 Aligned_cols=301 Identities=10% Similarity=0.008 Sum_probs=188.1
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCc----------CEE-EEEEcCCCCEEEEEECCCcEEEEEccCCceeEE
Q psy4869 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL----------PVL-SLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1119 (2435)
Q Consensus 1051 dg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~----------~V~-sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~ 1119 (2435)
.+..+++++.+|.+.-+|.++++.+-....... .+. .+.. ++..++.++.+|.+..+|.++|+.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 356777887789999999998887766542210 000 0111 356777888999999999999998887
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEe---ecccccCeEEEEEeCCCCEEEEEeCCCcE
Q psy4869 1120 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFIS---LYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196 (2435)
Q Consensus 1120 l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~---~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 1196 (2435)
............. .+..++++..++.|..+|..+++.+........ ......++ . .+..++.+..+|.+
T Consensus 146 ~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v--~~~~v~~~~~~g~v 217 (394)
T PRK11138 146 TKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----T--AFGGAIVGGDNGRV 217 (394)
T ss_pred ccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----E--ECCEEEEEcCCCEE
Confidence 7643321111111 245677788899999999999998877642100 00011111 1 13457778889999
Q ss_pred EEEEccCCceeeEeeccCC-------CEEEEEEee--CCCEEEEEECCCcEEEEECCCCceEEEEeeCCc-ccccCceEE
Q psy4869 1197 KVWGLDYGDCHKSLLAHED-------SVTGVTFVP--KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN-VYLPLQIQV 1266 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~~~h~~-------~V~~i~~sp--d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~-~~~~~~~~l 1266 (2435)
..+|..+|+.+........ ....+...| .+..++.++.+|.+..+|..+++.+........ ........+
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~v 297 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRI 297 (394)
T ss_pred EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEE
Confidence 9999999987655431110 011111222 355677788899999999999887766543321 112234567
Q ss_pred EEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccc
Q psy4869 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF 1346 (2435)
Q Consensus 1267 v~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~ 1346 (2435)
+.++.++.+..+|....+......... ......... .+..+.+++.+|.++++|.+++
T Consensus 298 y~~~~~g~l~ald~~tG~~~W~~~~~~--------------------~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVELWSQSDLL--------------------HRLLTAPVL--YNGYLVVGDSEGYLHWINREDG 355 (394)
T ss_pred EEEcCCCeEEEEECCCCcEEEcccccC--------------------CCcccCCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 788889999999987554322211000 000011111 2557788899999999999999
Q ss_pred eEEEEecCCCCCeEE-EEEecCCCEEEEEeCCCcEEEEeC
Q psy4869 1347 KFFISLYGHKLPVLS-LDMSYDSTLIATGSGDRTVKVWGL 1385 (2435)
Q Consensus 1347 k~i~~~~~h~~~V~~-la~spdg~~L~sGg~Dg~V~iwdl 1385 (2435)
+.+...+.....+.. ..+ .+..|+.++.||.|+.++.
T Consensus 356 ~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 356 RFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 988877644333321 122 3457888899999887764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.9e-06 Score=105.95 Aligned_cols=305 Identities=10% Similarity=0.034 Sum_probs=183.6
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEE--------EEEEe--cCCCEEEEEeCCCeEEEEEccCCceeecccc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSYAL--------SVCFV--PGDRHVLVGTKDGRLLIVDIGAGEILEDIPA 965 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~--------~vafs--pdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~ 965 (2435)
+++.++...++.+.-+|..+++.+...+...... .+.-. -++..|+++..+|.|+.+|.++|+++...+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 4444444456788888888888887766432100 00001 1456788888999999999999998877754
Q ss_pred cccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEE
Q psy4869 966 HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1045 (2435)
Q Consensus 966 h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 1045 (2435)
......+.... + ..++.+..+|.|..+|.+.++..+......... .. .....++
T Consensus 149 ~~~~~ssP~v~-~-----------~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-------~~-----~~~~sP~-- 202 (394)
T PRK11138 149 AGEALSRPVVS-D-----------GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL-------TL-----RGESAPA-- 202 (394)
T ss_pred CCceecCCEEE-C-----------CEEEEECCCCEEEEEEccCCCEeeeecCCCCcc-------cc-----cCCCCCE--
Confidence 43211111111 2 367778888999999987776544321110000 00 0000111
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCc-------CEEEEEEcC--CCCEEEEEECCCcEEEEEccCCce
Q psy4869 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL-------PVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDC 1116 (2435)
Q Consensus 1046 l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~-------~V~sl~~sp--dg~~L~Sgs~Dg~I~vWd~~t~~~ 1116 (2435)
. .+..++++..+|.+..++..+++.+........ ....+.-+| .+..++.++.+|.+..+|..+|+.
T Consensus 203 --v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 203 --T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred --E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence 1 123566677788899899888776554321100 011111122 245677788899999999999987
Q ss_pred eEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcE
Q psy4869 1117 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196 (2435)
Q Consensus 1117 ~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 1196 (2435)
+...... ....+.. .+..++.++.++.+..+|..+++.+...... . .....+..+ .+..|+.++.||.|
T Consensus 279 ~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----~-~~~~~sp~v--~~g~l~v~~~~G~l 347 (394)
T PRK11138 279 VWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDL----L-HRLLTAPVL--YNGYLVVGDSEGYL 347 (394)
T ss_pred EEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccccc----C-CCcccCCEE--ECCEEEEEeCCCEE
Confidence 7665321 1111222 4667888889999999999988766543210 0 011111122 25678889999999
Q ss_pred EEEEccCCceeeEeeccCCCEEE-EEEeeCCCEEEEEECCCcEEEEEC
Q psy4869 1197 KVWGLDYGDCHKSLLAHEDSVTG-VTFVPKTHYFFTTSKDGRVKQWDA 1243 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~~~h~~~V~~-i~~spd~~~lvsgs~Dg~I~vwD~ 1243 (2435)
+++|..+|+.+...+-....+.. ..+ .+..|+.++.||.|..+++
T Consensus 348 ~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 348 HWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99999999988776544333332 122 3456888899999887764
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=111.37 Aligned_cols=159 Identities=21% Similarity=0.342 Sum_probs=112.5
Q ss_pred EeCCCCcEEEEec-CCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEE---EEECCC
Q psy4869 31 LKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLK---TFSLDT 106 (2435)
Q Consensus 31 ~~~~~g~~lasg~-~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~---i~d~~~ 106 (2435)
..+++|++||++. +....++|+....... +-......+-.. .++.+..+.....++...|.++ +|..+.
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~----kl~~~~~v~~~~---~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGA----KLLDVSCVPKRP---TAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcc----eeeeEeecccCc---ceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 4578999999994 4455577766443211 011111222222 2455556666677776666655 444444
Q ss_pred CCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEE-ecCCCcEEEEEEeecCCCcEEEEEeCCCcE
Q psy4869 107 TDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRL-SGHKGVITDIRFMSQPGHHFVVSSAKDTFV 185 (2435)
Q Consensus 107 ~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I 185 (2435)
.+....-||-+-++.|+|+||+++|+++..|..|||=....---+..| -||+..|..++.. ++..|+|+|.|++|
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~---~~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT---DNYLLLSGSGDKTL 217 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec---cCceeeecCCCCcE
Confidence 344456789999999999999999999999999999877655444444 5899999999995 34568999999999
Q ss_pred EEEeccCCccccccc
Q psy4869 186 KIWDADTGDCFKTMA 200 (2435)
Q Consensus 186 ~iWd~~tg~~~~~~~ 200 (2435)
++||+++|+++.++.
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999999987663
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.5e-06 Score=115.92 Aligned_cols=241 Identities=13% Similarity=0.140 Sum_probs=158.9
Q ss_pred eEEEEccC-CCEEEEEeCCCeEEEEECCCCceEEEEec-c-------------CccccccCcccCCCeEEEEEeCCCeEE
Q psy4869 409 MDLKFSTD-GCHIFTCSTDQTLAVWDLEKGQRIKKMKG-H-------------STFVNSCDPVRRGQLLIASGSDDCTVK 473 (2435)
Q Consensus 409 ~~l~~s~d-g~~L~s~s~Dg~I~vwd~~tg~~v~~l~~-h-------------~~~v~sv~~~~~~~~llasgs~Dg~I~ 473 (2435)
..++++++ +..+++-+.++.|++||.. |+.+..+.+ . -.....+++.++++.++++-...+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46888875 5566666677889999985 555544432 1 112345666777666666666678899
Q ss_pred EEeCCCCcceEeec-----------------CcccEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEEecC-----
Q psy4869 474 VWDPRKKNQAVSMN-----------------NTYQVTSVAFNDT-AECVLTGGIDNDIKMWDLRTNSVVQKLRGH----- 530 (2435)
Q Consensus 474 vwD~~~~~~~~~~~-----------------~~~~v~sv~~sp~-g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h----- 530 (2435)
++|+.++....... .-.....++|+|+ +.++++...++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 99987654322110 0123468999994 555566677899999999887543 22111
Q ss_pred ----------CCCEEEEEEcCCCCEEE-EEECCCcEEEEEcCCCCCCCceEE-----------EEeCccc----ccccCe
Q psy4869 531 ----------SDTVTGLSLSPDGSYIL-SNAMDNTVRIWDIRPYVPGERCVK-----------VMSGHQH----NFEKNL 584 (2435)
Q Consensus 531 ----------~~~V~~i~~spdg~~la-s~s~Dg~I~lWdl~~~~~~~~~v~-----------~~~~h~~----~~~~~i 584 (2435)
-....+|+|+|+|++|+ +-+.+++|++||+..... ..+. .+..... ..-...
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~--~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS--RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecccccCcccccccCCCCchhhhhccCC
Confidence 12346799999998555 555679999999874210 0000 0000000 001124
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEec-------------CCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 585 LRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP-------------GHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 585 ~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~-------------~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
..++++++|+.+++-..++.|++||..++....... ++-.....|+++++|+++++-+.++.|++|+
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 578999999999999999999999998876653221 1223578999999999999999999999999
Q ss_pred CC
Q psy4869 652 SP 653 (2435)
Q Consensus 652 ~~ 653 (2435)
+.
T Consensus 887 ~~ 888 (1057)
T PLN02919 887 LN 888 (1057)
T ss_pred CC
Confidence 86
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-07 Score=110.36 Aligned_cols=284 Identities=14% Similarity=0.154 Sum_probs=191.3
Q ss_pred ccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC-------CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy4869 1038 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLD-------TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1110 (2435)
Q Consensus 1038 ~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~-------~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd 1110 (2435)
.+...|..++--.+.+-++.++.|..|++|.+. +..+..++..|..+|.++-|-.+.+.+++ -||.|.+||
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWD 810 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWD 810 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeec
Confidence 344556666655667778888999999999875 23466778899999999999988887774 578899999
Q ss_pred ccCCceeEEEec--cCCCEEEEEEcc--CCCEEEEE-eCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCC
Q psy4869 1111 LDYGDCHKSLLA--HEDSVTGVTFVP--KTHYFFTT-SKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDST 1185 (2435)
Q Consensus 1111 ~~t~~~~~~l~~--h~~~V~~v~fsp--~~~~l~s~-s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 1185 (2435)
.--|+.+..+.. ..+.+..+..-+ +...++++ +...+|+++|.+..+-...++. -...+..+-+.+++..+.|+
T Consensus 811 PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV-cna~~Pna~~R~iaVa~~GN 889 (1034)
T KOG4190|consen 811 PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV-CNAPGPNALTRAIAVADKGN 889 (1034)
T ss_pred ccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe-ccCCCCchheeEEEeccCcc
Confidence 877776664432 112223333333 33444444 6788999999998776665541 11234557789999999999
Q ss_pred EEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEE-EECCCCceEEEEeeCCcc---ccc
Q psy4869 1186 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ-WDADNFERIVTLHFNPNV---YLP 1261 (2435)
Q Consensus 1186 ~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~v-wD~~~~~~v~~~~~~~~~---~~~ 1261 (2435)
+++++-..|.|.+.|.++|+.+..++.-......++ .|.++.++....|.++.+ |-.-.+....+...++.. ...
T Consensus 890 ~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqs 968 (1034)
T KOG4190|consen 890 KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQS 968 (1034)
T ss_pred hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhc
Confidence 999999999999999999998877655443333333 255666777778888888 765544333333222211 124
Q ss_pred CceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEE
Q psy4869 1262 LQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKI 1340 (2435)
Q Consensus 1262 ~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v 1340 (2435)
.+..+++......+.+|.-... .+......+.+.....+-...++.-|-..-|..|...|.|++
T Consensus 969 vgpSLV~a~~Gn~lgVYad~a~---------------~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 969 VGPSLVTAQNGNILGVYADSAE---------------LHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cCceeEEeccCcEEEEEecchh---------------hhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 4556888888888888842211 111112223344445666777888888888888998888876
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-07 Score=106.76 Aligned_cols=168 Identities=17% Similarity=0.192 Sum_probs=128.1
Q ss_pred ccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCC-----cEEEE
Q psy4869 452 SCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTN-----SVVQK 526 (2435)
Q Consensus 452 sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~-----~~v~~ 526 (2435)
.|+|+-.-...-++.+.+..|-+-|+.++.... +..+..|-++.|...++++..|...|.|..+|++.+ .+...
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 345543322222556677788888888775433 346778889999999999999999999999999975 23333
Q ss_pred EecCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeE
Q psy4869 527 LRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCV 605 (2435)
Q Consensus 527 l~~h~~~V~~i~~sp-dg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V 605 (2435)
--|...|+++..-. ++.+|++.+.+|+|++||+|... .++.+..+.||.+... -.-+...+....+++++.|...
T Consensus 295 -lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a--~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 295 -LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSA--YLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred -EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-cccceeeeeccccccc--ccccccccccceEEEccCeeEE
Confidence 34888999998776 78999999999999999999532 1234899999976542 2345566778899999999999
Q ss_pred EEEECCCCcEEEEecCCCC
Q psy4869 606 YIWDTTTRRIAYKLPGHNG 624 (2435)
Q Consensus 606 ~iwd~~s~~~~~~l~~h~~ 624 (2435)
|||.++.|.++.+++....
T Consensus 371 RiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred EEEecccCceeeccCCCCc
Confidence 9999999999998875443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.9e-07 Score=100.09 Aligned_cols=267 Identities=15% Similarity=0.229 Sum_probs=168.0
Q ss_pred CCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCc-----eeecccccc------------cceeEEEEecCCCCCCCcCC
Q psy4869 925 GSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGE-----ILEDIPAHS------------QELWSVAMLPDQFNPNVYLP 987 (2435)
Q Consensus 925 ~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~-----~v~~~~~h~------------~~V~sv~~s~d~~~~~~~~p 987 (2435)
...+.+|.|...|.||++|.+.|+|.+|.-.... ....++.|. ..|..+.|..++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t-------- 97 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT-------- 97 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC--------
Confidence 3456688888888889998888999888654322 344455553 367888998775
Q ss_pred cceEEEEEeCCCeEEEEEcccc--cccccc---cc---------------cccccccccceeeeeecccc--ccCCCEEE
Q psy4869 988 LQIQVVTGGGDKSVKLWQLELV--SVNREA---DE---------------ETKDVSRSHKVLSLLHTRTL--KLEEQVLC 1045 (2435)
Q Consensus 988 ~~~~l~sgs~Dg~V~lW~l~~~--~~~~~~---~~---------------~~~~~~~~~~~l~~~~~~~~--~~~~~v~~ 1045 (2435)
....|+..+.|.+|++|.+-.. +...+. +. ..+.+......+...+++.. -+.--|.+
T Consensus 98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 1257788899999999998422 110000 00 01111222233333344333 23456889
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCC---eEEEEEecCC-----cCEEEEEEcCCC-CEEEEEECCCcEEEEEccCCc-
Q psy4869 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTF---KFFISLYGHK-----LPVLSLDMSYDS-TLIATGSGDRTVKVWGLDYGD- 1115 (2435)
Q Consensus 1046 l~~spdg~~Lavg~~dg~V~i~d~~~~---~~~~~l~~h~-----~~V~sl~~spdg-~~L~Sgs~Dg~I~vWd~~t~~- 1115 (2435)
+.|..|...++.+. |=.|.+|+++-- --+..++.|. .-|++..|+|.. ..+.-.+..|.|++-|++...
T Consensus 178 iS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 178 ISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 99999999998886 778999987522 2233444443 358888999964 566677889999999997321
Q ss_pred -----eeE--E--------EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcce-eEEEEEEEeec------cccc
Q psy4869 1116 -----CHK--S--------LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER-IVTLHFFISLY------GHKL 1173 (2435)
Q Consensus 1116 -----~~~--~--------l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~-~~~~~~~~~~~------~h~~ 1173 (2435)
.+. . +..-...|..+.|+++|+++++-+. -+|++||++..+. +..++....+. -...
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 111 1 1122347899999999999998776 6899999986433 33332100000 0112
Q ss_pred Ce---EEEEEeCCCCEEEEEeCCCcEEEEEc
Q psy4869 1174 PV---LSLDMSYDSTLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1174 ~V---~~l~~s~dg~~l~sgs~Dg~V~iwd~ 1201 (2435)
.| ..+.|+.|...+.+|+..+...+|-.
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeecc
Confidence 22 35677778888888888777766653
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-06 Score=101.91 Aligned_cols=252 Identities=17% Similarity=0.194 Sum_probs=175.8
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC--ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC-CCeEEEEECCCC
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG--ECENIGVMSGHTGAVMDLKFSTDGCHIFTCST-DQTLAVWDLEKG 437 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~--~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~vwd~~tg 437 (2435)
|++.|+-+.-. ..+++.+++.||.++.|.-.. +...+..+..|.+.|..++.+.|+..+.+++. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 67777766544 467899999999999997543 33445566789999999999999999999888 999999998865
Q ss_pred ceEEEEeccCccccccCcccCCC----eEEEEEeCCCeEEEEeCCCCcceEee---cCcccEEEEEECCCCCEEEEEecC
Q psy4869 438 QRIKKMKGHSTFVNSCDPVRRGQ----LLIASGSDDCTVKVWDPRKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGID 510 (2435)
Q Consensus 438 ~~v~~l~~h~~~v~sv~~~~~~~----~llasgs~Dg~I~vwD~~~~~~~~~~---~~~~~v~sv~~sp~g~~l~sgs~d 510 (2435)
..+.-++-..- ...+.|..... .+.++.-.++.+.++|-....+.... -|..+|.++.+++-+..+++....
T Consensus 87 DminmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccC-CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 44332221110 01112211111 34455566899999998765533222 578899999999999999999999
Q ss_pred CeEEEEECCC------CcEEEE---------EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeC
Q psy4869 511 NDIKMWDLRT------NSVVQK---------LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG 575 (2435)
Q Consensus 511 g~V~lwD~~s------~~~v~~---------l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~ 575 (2435)
|.|.-|.... .+.... +...+....++.|+|+|..+.+-+.|..|++++++.. +.++.+..
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG----klvqeiDE 241 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG----KLVQEIDE 241 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc----hhhhhhhc
Confidence 9999998872 211111 1234567789999999999999999999999998742 22111110
Q ss_pred ---------------------ccccc--------ccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEe
Q psy4869 576 ---------------------HQHNF--------EKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKL 619 (2435)
Q Consensus 576 ---------------------h~~~~--------~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l 619 (2435)
..... ......+.|.-.|+||+-|+.=| |+|.++.++++++.+
T Consensus 242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 00000 01234577888899999988766 889999999888877
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-05 Score=88.77 Aligned_cols=235 Identities=15% Similarity=0.173 Sum_probs=137.3
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCceeeE----EEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE
Q psy4869 368 SKYHPDGQYIASSGYDRQIFIWSVYGECENI----GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM 443 (2435)
Q Consensus 368 l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~----~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l 443 (2435)
++.+.+|+.||.- .|..|.|-..+++...+ ..-+...-.=+.++|+||+..|+.+...|+|++||+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 4567788888775 67778777665543322 11222334568899999999999999999999999954 444444
Q ss_pred ecc-------CccccccCcccCC-----CeEEEEEeCCCeEEEEeCCC-----CcceEee----cCcccEEEEEECCCCC
Q psy4869 444 KGH-------STFVNSCDPVRRG-----QLLIASGSDDCTVKVWDPRK-----KNQAVSM----NNTYQVTSVAFNDTAE 502 (2435)
Q Consensus 444 ~~h-------~~~v~sv~~~~~~-----~~llasgs~Dg~I~vwD~~~-----~~~~~~~----~~~~~v~sv~~sp~g~ 502 (2435)
... ...|..+.|.... ...++.-..+|.++-|-+.. .+....+ .....|+++.|+|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 332 1334444444332 23455667777777776532 1222222 2467899999999999
Q ss_pred EEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCE--EEEEECCCc------EEEEEcCCCCCCCceEEEEe
Q psy4869 503 CVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSY--ILSNAMDNT------VRIWDIRPYVPGERCVKVMS 574 (2435)
Q Consensus 503 ~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~--las~s~Dg~------I~lWdl~~~~~~~~~v~~~~ 574 (2435)
+|++|+.... +.+. -.+....+++-..-.+..+ .++...|+. ..+|.+- ....+.
T Consensus 161 LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~-------~~~~fs 223 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIP-------SFKFFS 223 (282)
T ss_pred EEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeecc-------ceeeee
Confidence 9888875322 0000 0011112222221111111 011111211 1222221 111121
Q ss_pred CcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCC
Q psy4869 575 GHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGH 622 (2435)
Q Consensus 575 ~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h 622 (2435)
. .......|..+..||||..|++...+|.|.+|++.+-++...+..+
T Consensus 224 ~-~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 224 R-QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred c-cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 1 1223468999999999999999999999999999988777666543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.7e-05 Score=96.79 Aligned_cols=192 Identities=15% Similarity=0.107 Sum_probs=122.7
Q ss_pred CCeeEEEEccCCCE-EEEEeCC---CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC--CeEEEEeCCC
Q psy4869 406 GAVMDLKFSTDGCH-IFTCSTD---QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD--CTVKVWDPRK 479 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~-L~s~s~D---g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D--g~I~vwD~~~ 479 (2435)
+.+....|+|||+. ++..+.+ ..|.++|+.+|+...... .........|+|++..++++.+.+ ..|.++|+..
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 37788999999985 6554443 469999998887544433 333344567999998888777655 4577778877
Q ss_pred CcceEeecCcccEEEEEECCCCCEEEEEecC-C--eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECC----
Q psy4869 480 KNQAVSMNNTYQVTSVAFNDTAECVLTGGID-N--DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMD---- 552 (2435)
Q Consensus 480 ~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d-g--~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~D---- 552 (2435)
+................|+|||+.|+..+.. | .|+++|+.+++..+.... ... ...|+|||++|+-.+..
T Consensus 267 g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 267 KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcc
Confidence 6643322333333456899999988876542 3 688889988876443321 111 24899999999876643
Q ss_pred -----CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC---CeEEEEECC
Q psy4869 553 -----NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD---KCVYIWDTT 611 (2435)
Q Consensus 553 -----g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D---g~V~iwd~~ 611 (2435)
..|.+.|+.. +. ...+.... ......|+|||+.|+....+ ..+.+.++.
T Consensus 344 ~~~~~~~I~v~d~~~----g~-~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 344 FGKNTFNLYLISTNS----DY-IRRLTANG-----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred cCCCCcEEEEEECCC----CC-eEECCCCC-----CcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 2567777753 22 22232221 11247899999988776543 235566664
|
|
| >PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.3e-07 Score=114.12 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=34.9
Q ss_pred ceEEEEEEeccCCCCcc-eEEEEccCCCCcCCCceEEEEee
Q psy4869 2356 IHSVKIIGWGKSSQNEP-YWLCTNSYNQGWGEQGLFKIRRG 2395 (2435)
Q Consensus 2356 ~Hav~iVGyg~~~~g~~-yWiikNSWG~~WG~~Gy~~i~r~ 2395 (2435)
+|||+|+|...+++|++ ||+|+||||+..|.+|||.|...
T Consensus 360 tHAM~itGv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 360 THAMVITGVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp EEEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred ceeEEEEEEEeccCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 59999999999778874 99999999999999999999864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00018 Score=87.36 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=143.6
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-
Q psy4869 410 DLKFST-DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN- 487 (2435)
Q Consensus 410 ~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~- 487 (2435)
++.|.+ ++.++++-...+.|..||..+++... +.... ...+.+...+..++++ .. +.+.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEE-Ec-CceEEEecCCCcEEEEeec
Confidence 567887 55556665568899999998776433 32222 4555555333444443 44 445566988875544332
Q ss_pred -----CcccEEEEEECCCCCEEEEEecC--------CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEE-EEECCC
Q psy4869 488 -----NTYQVTSVAFNDTAECVLTGGID--------NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYIL-SNAMDN 553 (2435)
Q Consensus 488 -----~~~~v~sv~~sp~g~~l~sgs~d--------g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~la-s~s~Dg 553 (2435)
.....+.+++.|+|++.++.... |.|+.++.. ++..... ..-...+.|+|+||++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccc
Confidence 34578999999999966665433 668888888 5543333 3345679999999999776 556788
Q ss_pred cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEE-c
Q psy4869 554 TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQF-H 632 (2435)
Q Consensus 554 ~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~f-s 632 (2435)
.|..|++............+.... ......-.+++..+|++.++.-..+.|.++|.+ |+++..+.-....+++++| -
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~-~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFP-GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-S-SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred eeEEEeccccccceeeeeeEEEcC-CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 899999863211111112221111 111235679999999998888889999999988 9988888766568999999 4
Q ss_pred CCCCEEEEE
Q psy4869 633 PKEPIIMSA 641 (2435)
Q Consensus 633 pd~~~Lasg 641 (2435)
++.+.|+..
T Consensus 235 ~~~~~L~vT 243 (246)
T PF08450_consen 235 PDGKTLYVT 243 (246)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 666655543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00013 Score=84.52 Aligned_cols=244 Identities=13% Similarity=0.122 Sum_probs=144.3
Q ss_pred EEecCCCcEEEEecCCcEEEEeCCCC--cee--EEEe--CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeeccc
Q psy4869 891 LAFSSDNLALVSACASQVKIWNRPSL--SCL--RTID--TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIP 964 (2435)
Q Consensus 891 la~s~dg~~la~g~~~~V~Iwd~~~~--~~~--~~l~--~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~ 964 (2435)
++.++||+.||+.++..|.|-..+.. ..+ ..++ ....=+-++||||+.+||.+...|.|.|||+.... +..++
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIP 81 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcC
Confidence 67889999999999999998876631 111 2222 23334689999999999999999999999987544 33332
Q ss_pred c-c------ccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeecccc
Q psy4869 965 A-H------SQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1037 (2435)
Q Consensus 965 ~-h------~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1037 (2435)
. + ...|..+.|.+.. ....| ...|+.-..+|.++-+-+..+... ..... .......
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~-~s~~w---s~ELlvi~Y~G~L~Sy~vs~gt~q--------~y~e~-----hsfsf~~ 144 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYK-KSAQW---SYELLVINYRGQLRSYLVSVGTNQ--------GYQEN-----HSFSFSS 144 (282)
T ss_pred cccccCCccccceeeeEeeccc-ccccc---ceeEEEEeccceeeeEEEEcccCC--------cceee-----EEEEecc
Confidence 2 2 2456666776543 11111 235666677788887776322110 01010 1111122
Q ss_pred ccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCC-E-EEEEECCC------cEEEE
Q psy4869 1038 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST-L-IATGSGDR------TVKVW 1109 (2435)
Q Consensus 1038 ~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~-~-L~Sgs~Dg------~I~vW 1109 (2435)
....+|.++.++|.-++|++|+.... +++. -..-...+++-..-.+.. + .+....|+ +..+|
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~ 214 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLL 214 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCcccccccccccee
Confidence 34789999999999999998874321 0000 001112222222211111 1 11122221 12334
Q ss_pred EccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1110 GLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1110 d~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
.+-+.+.........+.|..+..+||+..|++...+|.|.+|++.+......+
T Consensus 215 ~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 215 RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 43333222222335678999999999999999999999999999886665554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.8e-05 Score=95.81 Aligned_cols=201 Identities=12% Similarity=0.046 Sum_probs=127.1
Q ss_pred eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeC---CCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEE
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSD---DCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~---Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l 504 (2435)
.|.+-|.+... .+.+.... ......|+|++..+++..+. +..|.++|+.+++...............|+|||+.+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence 55565654333 23232223 55678899999764443232 456999999888766655555666778899999887
Q ss_pred EEEec---CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCC--cEEEEEcCCCCCCCceEEEEeCccc
Q psy4869 505 LTGGI---DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNA-MDN--TVRIWDIRPYVPGERCVKVMSGHQH 578 (2435)
Q Consensus 505 ~sgs~---dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg--~I~lWdl~~~~~~~~~v~~~~~h~~ 578 (2435)
+.... +..|+++|+.+++. ..+..+.+......|+|||+.|+-.+ ..+ .|.+.|+.. ++..+.... .
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~----g~~~rlt~~-g- 320 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS----GSVEQVVFH-G- 320 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC----CCeEeCccC-C-
Confidence 75432 45799999988764 34444443344568999999888655 334 466666653 222222211 1
Q ss_pred ccccCeEEEEEcCCCCEEEEecCC---------CeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECC
Q psy4869 579 NFEKNLLRCAWSVSGLYVTAGSAD---------KCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 579 ~~~~~i~~v~~spdg~~Lasgs~D---------g~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~D 644 (2435)
. ....|+|||++|+..+.. ..|.+.|+.+++.. .+... .......|+|||+.|+....+
T Consensus 321 ~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 K-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred C-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 0 124899999998876643 36888899888653 33332 233468999999977766644
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.6e-06 Score=99.47 Aligned_cols=165 Identities=16% Similarity=0.215 Sum_probs=119.9
Q ss_pred EEeecCCCCeEEEEEcCCeEEEEECCCCC----eEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEE
Q psy4869 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTD----VISTFTGH--KSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLH 153 (2435)
Q Consensus 80 ~~~~~~d~~~lav~~~~G~i~i~d~~~~~----~~~~l~gH--~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~ 153 (2435)
....+++++.+|++..+....+|+++... .+..+..- ...++.+..+......-..+++..+.+|....+++.
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~- 145 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE- 145 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-
Confidence 45566788889999888887788877554 33333333 234444444444444445567777888877654433
Q ss_pred EEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccc-ccccceEEEEEEEeCCCeEEEeeCCCcEEEEEc
Q psy4869 154 RLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM-AAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232 (2435)
Q Consensus 154 ~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~-~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl 232 (2435)
.+-||-.-+++|+|+|++ .+++++.+|..||+-....-..+..+ -||..-|..++.-++ ..|+++|.|++|++||+
T Consensus 146 ~~lGhvSml~dVavS~D~--~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDD--QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhhhhhhheeeecCCC--CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 345999999999999654 78999999999999877655555555 579999999998754 44899999999999999
Q ss_pred CCCCCccccchhhhhh
Q psy4869 233 RDRSDIDTEDKDKLSE 248 (2435)
Q Consensus 233 ~~~~~~~~~~~~~~~~ 248 (2435)
++++.++..+...+..
T Consensus 223 ~sgk~L~t~dl~s~~~ 238 (390)
T KOG3914|consen 223 TSGKLLDTCDLSSLVI 238 (390)
T ss_pred ccCCcccccchhHhhh
Confidence 9999887766655443
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-05 Score=101.30 Aligned_cols=323 Identities=17% Similarity=0.132 Sum_probs=188.4
Q ss_pred CEEEEEEcCCCCEEEEEEC----CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCcee
Q psy4869 1042 QVLCARVSPDSKLLAVSLL----DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1117 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~----dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~ 1117 (2435)
..+-..|+|...++|+++- .|.|.||- ++|++.+.+. ..-.+.+++|+|..-.|+.|=.-|.+.+|...+.+..
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 3445689999999999864 58898883 4555433332 1223677999999888999999999999998887777
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCC------EEEEEe
Q psy4869 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDST------LIATGS 1191 (2435)
Q Consensus 1118 ~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~------~l~sgs 1191 (2435)
.....|..+|..+.|+++|..++++..-|.|.+|....-..+.............-..+|...++++. ..++.+
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 77778999999999999999999999999999998764333332221110011112233444455532 233444
Q ss_pred CCCcEE-EEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCc---ccccCceEEE
Q psy4869 1192 GDRTVK-VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN---VYLPLQIQVV 1267 (2435)
Q Consensus 1192 ~Dg~V~-iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~---~~~~~~~~lv 1267 (2435)
.+.-+- .++.+.....+.. .|. -.|++..++.++.+|+|+..|-.... ......... .|.+...-++
T Consensus 175 De~alD~~fnwk~~~a~rs~-~ks-------gv~~g~~F~~~~~~GtVyyvdq~g~~-~~V~k~dS~vQmLf~~~~eai~ 245 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSD-EKS-------GVPKGTEFLFAGKSGTVYYVDQNGRQ-RTVHKLDSEVQMLFMGYCEAIS 245 (1416)
T ss_pred chhhhcccccCccchhhccc-ccc-------CCCCCcEEEEEcCCceEEEEcCCCcE-EEEEEccchHHHHHhcccceEE
Confidence 443332 3322211100111 111 23678889999999999888754322 222222211 2233333333
Q ss_pred EEECCCeEEEEEccccccccc-----------ccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCC
Q psy4869 1268 TGGGDKSVKLWQLELVSVNRE-----------ADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDT 1336 (2435)
Q Consensus 1268 ~g~~d~~v~iwdl~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG 1336 (2435)
+-..+-.+.++-........+ ..+-.-........+.+...+....+..+.|+++...+..++.|...|
T Consensus 246 ~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~g 325 (1416)
T KOG3617|consen 246 IIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEG 325 (1416)
T ss_pred EEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCC
Confidence 333333333332221100000 000000111111223333445556678899999999999999999999
Q ss_pred eEEEEEcccc-------eEEEEec---CCCCCeEEEEEecCCCEEEEEe
Q psy4869 1337 TVKIFFLDTF-------KFFISLY---GHKLPVLSLDMSYDSTLIATGS 1375 (2435)
Q Consensus 1337 ~V~v~d~~~~-------k~i~~~~---~h~~~V~~la~spdg~~L~sGg 1375 (2435)
++.+|---.. +-...+. .-.+.|..+.|.|--..++.-+
T Consensus 326 nv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 326 NVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred cEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 9999964321 2233333 3347799999988554444433
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00013 Score=88.02 Aligned_cols=224 Identities=17% Similarity=0.083 Sum_probs=142.8
Q ss_pred CCcEEEEeCCCCceeEEEeCCCeEEEEE--EecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCC
Q psy4869 905 ASQVKIWNRPSLSCLRTIDTGSYALSVC--FVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNP 982 (2435)
Q Consensus 905 ~~~V~Iwd~~~~~~~~~l~~~~~v~~va--fspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~ 982 (2435)
++.|..||..+++.+.....+....... ..+++++|+++..++.|+.||..+|+++..+.... ++.......+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~---- 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVVDG---- 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEEET----
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeeecc----
Confidence 4678899999999998887522111111 34467788888999999999999999887765422 2111112222
Q ss_pred CCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCC
Q psy4869 983 NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDT 1062 (2435)
Q Consensus 983 ~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg 1062 (2435)
..++.+..|+.|+.++...++..+...... .+............++..++++..++
T Consensus 77 -------~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 77 -------GRVYVGTSDGSLYALDAKTGKVLWSIYLTS-----------------SPPAGVRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp -------TEEEEEETTSEEEEEETTTSCEEEEEEE-S-----------------SCTCSTB--SEEEEETTEEEEEETCS
T ss_pred -------cccccccceeeeEecccCCcceeeeecccc-----------------ccccccccccCceEecCEEEEEeccC
Confidence 367777788999999987666433210000 00000111222223388889998899
Q ss_pred cEEEEEcCCCeEEEEEecCCcC----------EEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEE
Q psy4869 1063 TVKIFFLDTFKFFISLYGHKLP----------VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTF 1132 (2435)
Q Consensus 1063 ~V~i~d~~~~~~~~~l~~h~~~----------V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~f 1132 (2435)
.|..+|..+++.+......... +..-....++ .++.+..++.+..+|+.+++.+.... ...+..+ .
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~ 208 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-P 208 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-E
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-c
Confidence 9999999999998888664422 1222222244 77777888865445999998665333 2222221 3
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCcceeEE
Q psy4869 1133 VPKTHYFFTTSKDGRVKQWDADNFERIVT 1161 (2435)
Q Consensus 1133 sp~~~~l~s~s~Dg~V~iwD~~~~~~~~~ 1161 (2435)
...+..|+.++.++.|..||+.+++....
T Consensus 209 ~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 209 SVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred eeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 45677888888999999999999887653
|
... |
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.6e-05 Score=84.18 Aligned_cols=205 Identities=13% Similarity=0.038 Sum_probs=143.0
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEE-EecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEEccCCceeEEEeccCCCEE
Q psy4869 1051 DSKLLAVSLLDTTVKIFFLDTFKFFIS-LYGHKLPVLSLDMSYD-STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT 1128 (2435)
Q Consensus 1051 dg~~Lavg~~dg~V~i~d~~~~~~~~~-l~~h~~~V~sl~~spd-g~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~ 1128 (2435)
...+||.|+..|...+|...+.+.... ...|...|.-+.-..| ...+..++.|.++++.+++-+.....+....-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 456899999999999999886553322 2333333321111111 23466678899999998875543333322223488
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcee-
Q psy4869 1129 GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH- 1207 (2435)
Q Consensus 1129 ~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~- 1207 (2435)
.+.++++++++++.+....|.+|.+........- .........-.+..|+.....+|++..||.+.|||++.....
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~---~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN---IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeee---eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 9999999999999999999999998765443322 122334555677889999999999999999999999875432
Q ss_pred ----eEeeccCCCEEEEEEeeCC--CEEEEEECCCcEEEEECCCCceEEEEeeCCcc
Q psy4869 1208 ----KSLLAHEDSVTGVTFVPKT--HYFFTTSKDGRVKQWDADNFERIVTLHFNPNV 1258 (2435)
Q Consensus 1208 ----~~~~~h~~~V~~i~~spd~--~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~ 1258 (2435)
.+-..|.+.++.+.|++.+ .+|+..-.-+.+.+.|+|+.+....+......
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~ 296 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV 296 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence 2233689999999999844 45666666788999999999887776655443
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.7e-07 Score=113.57 Aligned_cols=222 Identities=19% Similarity=0.300 Sum_probs=164.7
Q ss_pred eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC-eEEE
Q psy4869 396 ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC-TVKV 474 (2435)
Q Consensus 396 ~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg-~I~v 474 (2435)
.....+..|+...++++|+-+.++|+.|+..|.|++|++.+|........|...++-+..+.+|..++.+++... ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 345567788999999999999999999999999999999999999999999999999999999988887776655 6788
Q ss_pred EeCCC-CcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEe-c---CCCCEEEEEEcCCCCEEEEE
Q psy4869 475 WDPRK-KNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR-G---HSDTVTGLSLSPDGSYILSN 549 (2435)
Q Consensus 475 wD~~~-~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~-~---h~~~V~~i~~spdg~~las~ 549 (2435)
|++.. +.+...+. .-.++.|+..-..-+.|.......+||+.++.++.++- + ..-.-++..|+|+..+++-
T Consensus 1172 W~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred hccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-
Confidence 99864 33333332 34577888776666777777889999999998776632 1 1223377899999888763
Q ss_pred ECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEE
Q psy4869 550 AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDV 629 (2435)
Q Consensus 550 s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l 629 (2435)
|| .+||+|.. ..+..|...... ..=.|+|.|.-++.-+ .|||+++.++++..+... -..|
T Consensus 1248 --dG--vLWDvR~~----~aIh~FD~ft~~-----~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~V 1307 (1516)
T KOG1832|consen 1248 --DG--VLWDVRIP----EAIHRFDQFTDY-----GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAV 1307 (1516)
T ss_pred --Cc--eeeeeccH----HHHhhhhhheec-----ccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEE
Confidence 44 58999842 334433322111 1235899998888765 589999999988765433 3567
Q ss_pred EEcCCCCEEEEE
Q psy4869 630 QFHPKEPIIMSA 641 (2435)
Q Consensus 630 ~fspd~~~Lasg 641 (2435)
.|+..|..++..
T Consensus 1308 tFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1308 TFNSTGDVMYAM 1319 (1516)
T ss_pred EeccCccchhhh
Confidence 888887765543
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=90.41 Aligned_cols=165 Identities=17% Similarity=0.195 Sum_probs=108.0
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC-----CCeEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST-----DQTLA 430 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-----Dg~I~ 430 (2435)
..+.-|.++-.+-+.+--++.++.+..||.+.+++.+...............-.+.+....+..|.++.. -+..+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 3344444443444445567889999999999999876532221111111111122233334555554432 24566
Q ss_pred EEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee--cCcccEEEEEECC-CCCEEEEE
Q psy4869 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM--NNTYQVTSVAFND-TAECVLTG 507 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~--~~~~~v~sv~~sp-~g~~l~sg 507 (2435)
.|+++..+....-+-....|.+++-+|..++++++|++||.+.+||.+.......+ .|+..+..+-|+| ++..|+++
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 77765433222222223348888889998999999999999999999987555444 5888999999998 56789999
Q ss_pred ecCCeEEEEECCC
Q psy4869 508 GIDNDIKMWDLRT 520 (2435)
Q Consensus 508 s~dg~V~lwD~~s 520 (2435)
+.||.+..||..+
T Consensus 243 sedGslw~wdas~ 255 (319)
T KOG4714|consen 243 SEDGSLWHWDAST 255 (319)
T ss_pred cCCCcEEEEcCCC
Confidence 9999999999765
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00039 Score=83.89 Aligned_cols=220 Identities=16% Similarity=0.041 Sum_probs=145.5
Q ss_pred CCcEEEEEccCCceeeEeeccCCCEEEEE--EeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccc---cCceEEE
Q psy4869 1193 DRTVKVWGLDYGDCHKSLLAHEDSVTGVT--FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYL---PLQIQVV 1267 (2435)
Q Consensus 1193 Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~--~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~---~~~~~lv 1267 (2435)
+|.|..||.++|+.+....--. ...... ..+++..+++++.++.|..||..+++.+........... .....++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 6889999999999887775311 122222 334677788889999999999999999888887544332 2455677
Q ss_pred EEECCCeEEEEEcccccccccc-cccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccc
Q psy4869 1268 TGGGDKSVKLWQLELVSVNREA-DEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF 1346 (2435)
Q Consensus 1268 ~g~~d~~v~iwdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~ 1346 (2435)
++..++.+..+|....+..... ..... ... .........++..++++..+|.|+.+|.+++
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG 142 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSP-----------------PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTG 142 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSC-----------------TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred cccceeeeEecccCCcceeeeecccccc-----------------ccc-cccccCceEecCEEEEEeccCcEEEEecCCC
Confidence 7888889999998766654431 11100 000 1111122223788888888999999999999
Q ss_pred eEEEEecCCCCCe----------EEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEE
Q psy4869 1347 KFFISLYGHKLPV----------LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT 1416 (2435)
Q Consensus 1347 k~i~~~~~h~~~V----------~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSg 1416 (2435)
+.+..+....... ..-....++ .++.++.++.+..+|+.+++.+-... ...+..+ ....+..++.+
T Consensus 143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~ 218 (238)
T PF13360_consen 143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVT 218 (238)
T ss_dssp EEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEE
T ss_pred cEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEE
Confidence 9988887644221 111122244 77777777764444999998654322 2222221 44567788877
Q ss_pred eCCCcEEEEECCCceeEEE
Q psy4869 1417 SKDGRVKQWDADNFERIVT 1435 (2435)
Q Consensus 1417 g~Dg~V~lWd~~~~~~l~~ 1435 (2435)
+.|+.|..||+.+.+.+++
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 7999999999999998875
|
... |
| >PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ] | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.1e-08 Score=100.79 Aligned_cols=87 Identities=25% Similarity=0.374 Sum_probs=79.7
Q ss_pred eeeeecccchhhhheeeeeechhhhHHHHHhHhhhh-cCCCceEEEeeeeeeeeeeccCccccc-chhhHHHHHHHHHHh
Q psy4869 1622 IIIKKFLFSSELEEVLLVLSLSQVTDLLTHLSSLLD-SSHHRCELVIRVAVFLVRIHHGPLTAS-KELLPVLQRLEQLAS 1699 (2435)
Q Consensus 1622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 1699 (2435)
.+++..+..+++|.++..|||++|+.||++|..+++ +.+..+|+++|.+.++|++|.++|.++ +++++.|..|+..+.
T Consensus 7 ~~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~ 86 (110)
T PF04003_consen 7 LEVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILR 86 (110)
T ss_pred HHHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999997 334449999999999999999999999 999999999999999
Q ss_pred cccccccCc
Q psy4869 1700 RRVEEIRTP 1708 (2435)
Q Consensus 1700 ~~~~~~~~~ 1708 (2435)
.+.+.+++.
T Consensus 87 ~~~~~l~~l 95 (110)
T PF04003_consen 87 ERLQNLSKL 95 (110)
T ss_pred HHHHHHHHH
Confidence 999988753
|
This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0016 Score=79.07 Aligned_cols=215 Identities=18% Similarity=0.140 Sum_probs=138.8
Q ss_pred eEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEc-CCCCEEEEEECCCcEEEEE
Q psy4869 990 IQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFF 1068 (2435)
Q Consensus 990 ~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s-pdg~~Lavg~~dg~V~i~d 1068 (2435)
..+++--..+.|..|+.+.... ....... ...+++. ++ ..|+++.. +.+.++|
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~~~-----------------------~~~~~~~-~~G~~~~~~~-g~l~v~~~-~~~~~~d 66 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTGEV-----------------------EVIDLPG-PNGMAFDRPD-GRLYVADS-GGIAVVD 66 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-----------------------EEEESSS-EEEEEEECTT-SEEEEEET-TCEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCeE-----------------------EEEecCC-CceEEEEccC-CEEEEEEc-CceEEEe
Confidence 4555555678888888653221 0012222 6677888 56 55555554 4566679
Q ss_pred cCCCeEEEEEec-----CCcCEEEEEEcCCCCEEEEEECC--------CcEEEEEccCCceeEEEeccCCCEEEEEEccC
Q psy4869 1069 LDTFKFFISLYG-----HKLPVLSLDMSYDSTLIATGSGD--------RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1135 (2435)
Q Consensus 1069 ~~~~~~~~~l~~-----h~~~V~sl~~spdg~~L~Sgs~D--------g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~ 1135 (2435)
..+++....... .....+.+++.++|++.++.... |.|..++.. ++... +...-...+.++|+|+
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~d 144 (246)
T PF08450_consen 67 PDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPD 144 (246)
T ss_dssp TTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETT
T ss_pred cCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCc
Confidence 888765444432 34568999999999977776544 457777766 44333 3334456789999999
Q ss_pred CCEEE-EEeCCCcEEEEeCCCcce-eEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeecc
Q psy4869 1136 THYFF-TTSKDGRVKQWDADNFER-IVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1213 (2435)
Q Consensus 1136 ~~~l~-s~s~Dg~V~iwD~~~~~~-~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h 1213 (2435)
++.|+ +-+..+.|..|++..... +........+....+..-.+++..+|++.++....+.|.++|.+ |+.+..+.-.
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 98776 556778899999864333 32222222222223347789999999988887788999999998 8888877766
Q ss_pred CCCEEEEEEe-eCCCEEEEEE
Q psy4869 1214 EDSVTGVTFV-PKTHYFFTTS 1233 (2435)
Q Consensus 1214 ~~~V~~i~~s-pd~~~lvsgs 1233 (2435)
...+++++|- ++.+.|+..+
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEe
Confidence 5689999995 4655555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-06 Score=109.99 Aligned_cols=261 Identities=16% Similarity=0.270 Sum_probs=175.0
Q ss_pred ccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC--eE
Q psy4869 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ--TL 429 (2435)
Q Consensus 352 ~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg--~I 429 (2435)
|.+..+++.|....+|++|+-+.+.|+.|+..|.|+++++..+. ......+|..+|+.+.-+.||..+++.+.-. -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCchH
Confidence 45667899999999999999999999999999999999998764 3456788999999999999998877765433 46
Q ss_pred EEEECCC-CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-----cCcccEEEEEECCCCCE
Q psy4869 430 AVWDLEK-GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-----NNTYQVTSVAFNDTAEC 503 (2435)
Q Consensus 430 ~vwd~~t-g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-----~~~~~v~sv~~sp~g~~ 503 (2435)
.+|++.+ +...+.+.+. .++.|+......++ |..-....+||+.+..+...+ .....-+++.|+|+..+
T Consensus 1170 aLW~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDED----KAVKFSNSLQFRAL-GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccccc----ceeehhhhHHHHHh-cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 7999753 4555555432 34566555444443 333356889999998876663 23344588999999988
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccC
Q psy4869 504 VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKN 583 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~ 583 (2435)
++- || .+||++..+.++.|..-+..+. =.|+|+|+.++.-+. |||+|++ +.+..... -.
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF----~lLh~VP~------Ld 1303 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTF----KLLHSVPS------LD 1303 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHH----HHHhcCcc------cc
Confidence 763 44 4899999888887754443222 259999999998765 9999964 22221111 12
Q ss_pred eEEEEEcCCCCEEEEecC------C-----------CeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEE
Q psy4869 584 LLRCAWSVSGLYVTAGSA------D-----------KCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640 (2435)
Q Consensus 584 i~~v~~spdg~~Lasgs~------D-----------g~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Las 640 (2435)
...+.|...|..++..-. | ...|-+|..+.+.+.++.+ ...|..+|-.|...+|+.
T Consensus 1304 qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEE
Confidence 356777777766554320 0 1234455555555555533 334555555555444443
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.3e-06 Score=97.91 Aligned_cols=154 Identities=18% Similarity=0.270 Sum_probs=119.6
Q ss_pred CcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCC-----CeE
Q psy4869 36 GRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTT-----DVI 110 (2435)
Q Consensus 36 g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~-----~~~ 110 (2435)
|.-.++|-+..|.|-|++++-.+... -...|-++.+.-.+..+..|..+|.|..+|++.+ .+.
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~qsf~------------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQSFQ------------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred eeeecccccceeEEEEeecccccccc------------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 44445567778888888765433211 2334556677776789999999999999999876 344
Q ss_pred EEecCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccCCee---EEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEE
Q psy4869 111 STFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECG---LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186 (2435)
Q Consensus 111 ~~l~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~~~~---~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~ 186 (2435)
+.|. |.+.|+|++.-. ++++|.+.+++|.|++||.+--++ +..+.||-+.-.-+-++-++....+++++.|...|
T Consensus 293 ~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 293 QRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 4444 999999998877 788999999999999999987665 88899998776666665556666899999999999
Q ss_pred EEeccCCccccccccc
Q psy4869 187 IWDADTGDCFKTMAAH 202 (2435)
Q Consensus 187 iWd~~tg~~~~~~~~h 202 (2435)
||.++.|.++.++...
T Consensus 372 iWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEecccCceeeccCCC
Confidence 9999999999887543
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0038 Score=70.69 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=92.4
Q ss_pred CCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeeccccc
Q psy4869 1094 STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKL 1173 (2435)
Q Consensus 1094 g~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~ 1173 (2435)
..+++.|+..+.+.--|..+|+....... ...|.+-+.- -|++++.|++.|.+++.+.+++.+.+.+.. ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-------~~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-------LE 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee-------hh
Confidence 35677788888888888888877654321 1122222222 477899999999999999999988776642 12
Q ss_pred CeEE-EEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEEC
Q psy4869 1174 PVLS-LDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1243 (2435)
Q Consensus 1174 ~V~~-l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~ 1243 (2435)
.|.+ ....+++..|+.|+.|+..+..|.++..++...+-....-.+-+..|....|..+...|.+.--..
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence 2222 234568999999999999999999998888776543333333344453344555555555544333
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0033 Score=71.19 Aligned_cols=145 Identities=8% Similarity=-0.027 Sum_probs=95.4
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEE
Q psy4869 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131 (2435)
Q Consensus 1052 g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~ 1131 (2435)
..++++|+..+.+.-.|..+++.+.+-. ...+|-+-+.- -|++++.|...|.+++.+.++|.....+..-..--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 3467788888888888988887665432 12233332222 467899999999999999999987776654333223445
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCC
Q psy4869 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1204 (2435)
Q Consensus 1132 fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~ 1204 (2435)
..+++..++.++.|+..+..|.++...+...+. ..+...+-++.+-...|+.+...|.|.--..+.+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc------gG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC------GGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEeccc------CCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 567899999999999999999998877766531 1222223344453344555555566655555444
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-05 Score=88.85 Aligned_cols=146 Identities=19% Similarity=0.271 Sum_probs=96.2
Q ss_pred CCCEEEEEECCCcEEEEEccCCc-eeEEEec-cCCCEEEEEEccCCCEEEEEe-----CCCcEEEEeCCCcceeEEEEEE
Q psy4869 1093 DSTLIATGSGDRTVKVWGLDYGD-CHKSLLA-HEDSVTGVTFVPKTHYFFTTS-----KDGRVKQWDADNFERIVTLHFF 1165 (2435)
Q Consensus 1093 dg~~L~Sgs~Dg~I~vWd~~t~~-~~~~l~~-h~~~V~~v~fsp~~~~l~s~s-----~Dg~V~iwD~~~~~~~~~~~~~ 1165 (2435)
.++.++++..||.+.+++.+.-. ....+.. |.+. .+.++...++.+.++. .-+..+.|+++..+.....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~--- 175 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS--- 175 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeeccccccccccc---
Confidence 45779999999999999876421 1112211 2211 1122222334333322 1234566666543322221
Q ss_pred EeecccccCeEEEEEeCC-CCEEEEEeCCCcEEEEEccCCce-eeEeeccCCCEEEEEEee-CCCEEEEEECCCcEEEEE
Q psy4869 1166 ISLYGHKLPVLSLDMSYD-STLIATGSGDRTVKVWGLDYGDC-HKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWD 1242 (2435)
Q Consensus 1166 ~~~~~h~~~V~~l~~s~d-g~~l~sgs~Dg~V~iwd~~t~~~-~~~~~~h~~~V~~i~~sp-d~~~lvsgs~Dg~I~vwD 1242 (2435)
......|.+++-+|. ...+++|+.||.+.+||.+.... ...++.|+.+++.+.|+| ++..|++++.||.+..||
T Consensus 176 ---~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 176 ---KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ---ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 122344999999985 45667788999999999998753 445679999999999999 788999999999999999
Q ss_pred CCC
Q psy4869 1243 ADN 1245 (2435)
Q Consensus 1243 ~~~ 1245 (2435)
...
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 875
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.13 Score=69.01 Aligned_cols=451 Identities=14% Similarity=0.131 Sum_probs=240.5
Q ss_pred CcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeeccc-ccccceeEEEE
Q psy4869 897 NLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIP-AHSQELWSVAM 975 (2435)
Q Consensus 897 g~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~-~h~~~V~sv~~ 975 (2435)
|..|.-...+.|++++-.. .+.....+........+-+...+++++.++.+...++..+.+..... .-..+|.|+.+
T Consensus 461 g~~lvQvTs~~iRl~ss~~--~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDi 538 (1096)
T KOG1897|consen 461 GNQLVQVTSNSIRLVSSAG--LRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDI 538 (1096)
T ss_pred CceEEEEecccEEEEcchh--hhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEec
Confidence 4445555567888888772 22333333333333334455577777778888888877766322221 12458999999
Q ss_pred ecCCCCCCCcCCcceEEEEEeCCCeEEEEEcc-cccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCE
Q psy4869 976 LPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLE-LVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1054 (2435)
Q Consensus 976 s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 1054 (2435)
+|-+-..+ +...++.|..+..+++.... +... +.......-..++.|.-..|-.|..+
T Consensus 539 sp~~d~~~----~s~~~aVG~Ws~~~~~l~~~pd~~~-----------------~~~~~l~~~~iPRSIl~~~~e~d~~y 597 (1096)
T KOG1897|consen 539 SPLGDAPN----KSRLLAVGLWSDISMILTFLPDLIL-----------------ITHEQLSGEIIPRSILLTTFEGDIHY 597 (1096)
T ss_pred ccCCCCCC----cceEEEEEeecceEEEEEECCCcce-----------------eeeeccCCCccchheeeEEeeccceE
Confidence 98752222 23467777665555544321 1110 00001111223566777778888999
Q ss_pred EEEEECCCcEEEEEcC--CCeEEEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEE-E
Q psy4869 1055 LAVSLLDTTVKIFFLD--TFKFFISLY--GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT-G 1129 (2435)
Q Consensus 1055 Lavg~~dg~V~i~d~~--~~~~~~~l~--~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~-~ 1129 (2435)
|.++..||.+.-|.++ +++.-...+ -...|+.=-.|+..++.-+-+..|.-..+|..+ ++.+..-..-+ .+. .
T Consensus 598 LlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~k-ev~~~ 675 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLK-EVNHM 675 (1096)
T ss_pred EEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchH-Hhhhh
Confidence 9999999999877654 444322222 223455555665555444444555555566533 33332211100 111 1
Q ss_pred EEEccC--CCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeC-----------C---
Q psy4869 1130 VTFVPK--THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG-----------D--- 1193 (2435)
Q Consensus 1130 v~fsp~--~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~-----------D--- 1193 (2435)
..|+.+ ...++.+. .+.+++..+..-..+..- ++ .-......+++.+....+++.+. .
T Consensus 676 c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~ir----tv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~ 749 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIR----TV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEV 749 (1096)
T ss_pred cccccccCCceEEEec-CCceEEEEecchhhccee----ee-cCCCChhheEecccceEEEEEecccccchhhcCCcceE
Confidence 122211 22344433 456777766543332221 11 12233445555553333333321 1
Q ss_pred CcEEEEEccCCceeeEee--cc--CCCEEEEEEeeC-CCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEE
Q psy4869 1194 RTVKVWGLDYGDCHKSLL--AH--EDSVTGVTFVPK-THYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVT 1268 (2435)
Q Consensus 1194 g~V~iwd~~t~~~~~~~~--~h--~~~V~~i~~spd-~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~ 1268 (2435)
..++++|-++.+.+.... .. .-.|.++.|..| +.++++|. ..+|--... |
T Consensus 750 s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT----~~v~Pde~e--------------p------- 804 (1096)
T KOG1897|consen 750 SFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGT----GLVYPDENE--------------P------- 804 (1096)
T ss_pred EEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEE----EeeccCCCC--------------c-------
Confidence 236677766655433221 11 113455557766 55566653 234422110 0
Q ss_pred EECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceE
Q psy4869 1269 GGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF 1348 (2435)
Q Consensus 1269 g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~ 1348 (2435)
..|.+.+|.+..... .....+...++.+.++... +|+++ ++.+-.|++|++.+.+.
T Consensus 805 --~~GRIivfe~~e~~~-------------------L~~v~e~~v~Gav~aL~~f-ngkll--A~In~~vrLye~t~~~e 860 (1096)
T KOG1897|consen 805 --VNGRIIVFEFEELNS-------------------LELVAETVVKGAVYALVEF-NGKLL--AGINQSVRLYEWTTERE 860 (1096)
T ss_pred --ccceEEEEEEecCCc-------------------eeeeeeeeeccceeehhhh-CCeEE--EecCcEEEEEEccccce
Confidence 134555555432000 0001122234555555332 44444 45788999999999988
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC--CCCceEEEec-ccccceEEEEEeeCCCEEEEEeCCCcEEEE
Q psy4869 1349 FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL--DYGDCHKSLL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1425 (2435)
Q Consensus 1349 i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl--~~gk~~~~~~-~h~~~V~~laf~P~~~~laSgg~Dg~V~lW 1425 (2435)
++.-..+..++..+...-.|..|+.|.-=+.|.+-.+ .+|...-.-+ -|..|.+++++-.+. .++-+-.+|.+.+-
T Consensus 861 Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d-~ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 861 LRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD-TYLGAENSGNLFTV 939 (1096)
T ss_pred ehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc-eEEeecccccEEEE
Confidence 8888889999999999999999999998888766544 4444544333 467799999987655 44445566666665
Q ss_pred ECC
Q psy4869 1426 DAD 1428 (2435)
Q Consensus 1426 d~~ 1428 (2435)
..+
T Consensus 940 ~~d 942 (1096)
T KOG1897|consen 940 RKD 942 (1096)
T ss_pred Eec
Confidence 544
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=87.41 Aligned_cols=300 Identities=14% Similarity=0.113 Sum_probs=168.4
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCCe---------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceeeccccc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSY---------ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAH 966 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~---------v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h 966 (2435)
+++.++...++.|.-.|..+++.+..++.... ...+++. ++..|+++..+|.|+.+|.++|+++..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 55555555568888889999988877664322 0111111 2368888999999999999999988776543
Q ss_pred ccc--eeEEEEecCCCCCCCcCCcceEEEEEe---------CCCeEEEEEcccccccccccccccccccccceeeee-ec
Q psy4869 967 SQE--LWSVAMLPDQFNPNVYLPLQIQVVTGG---------GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLL-HT 1034 (2435)
Q Consensus 967 ~~~--V~sv~~s~d~~~~~~~~p~~~~l~sgs---------~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 1034 (2435)
... -..+.-.|.- .+..++.++ .+|.|...|...++.............. ....... ..
T Consensus 140 ~~~~~~~~i~ssP~v--------~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~-~~~~~~~~~~ 210 (488)
T cd00216 140 DQVPPGYTMTGAPTI--------VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA-FPTWGPDRQM 210 (488)
T ss_pred CCcCcceEecCCCEE--------ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC-CCCCCCCcce
Confidence 321 0011111110 012444443 3577888887766654432211000000 0000000 00
Q ss_pred cccccCCCE-EEEEEcCCCCEEEEEECCC------------------cEEEEEcCCCeEEEEEec--CCc--------CE
Q psy4869 1035 RTLKLEEQV-LCARVSPDSKLLAVSLLDT------------------TVKIFFLDTFKFFISLYG--HKL--------PV 1085 (2435)
Q Consensus 1035 ~~~~~~~~v-~~l~~spdg~~Lavg~~dg------------------~V~i~d~~~~~~~~~l~~--h~~--------~V 1085 (2435)
. ......+ ...++++.+..++++..++ .|.-+|..+++.+-.++. |.. ++
T Consensus 211 ~-~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~ 289 (488)
T cd00216 211 W-GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS 289 (488)
T ss_pred e-cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe
Confidence 0 0000111 1356666777888887665 688899999988777642 211 11
Q ss_pred -EEEEEcCCCC---EEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEE------------------e
Q psy4869 1086 -LSLDMSYDST---LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT------------------S 1143 (2435)
Q Consensus 1086 -~sl~~spdg~---~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~------------------s 1143 (2435)
..+. .-++. .++.++.+|.+...|.++|+.+....... ..+...| ..++.+ .
T Consensus 290 ~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~ 363 (488)
T cd00216 290 LADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKP 363 (488)
T ss_pred EEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCC
Confidence 1110 01333 57788899999999999999887764221 1123333 333332 2
Q ss_pred CCCcEEEEeCCCcceeEEEEEEEeeccc--ccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeec
Q psy4869 1144 KDGRVKQWDADNFERIVTLHFFISLYGH--KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1212 (2435)
Q Consensus 1144 ~Dg~V~iwD~~~~~~~~~~~~~~~~~~h--~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~ 1212 (2435)
.+|.|..+|..+++.+............ ..+...-...-.+..|++++.||.|+.+|.++|+.+..++-
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 4678999999999887776421000000 01111111112467899999999999999999998877754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.8e-06 Score=68.52 Aligned_cols=39 Identities=44% Similarity=0.776 Sum_probs=37.0
Q ss_pred CCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEE
Q psy4869 107 TDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 107 ~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd 145 (2435)
++++.+|.+|.+.|++|+|+|++++||+|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0011 Score=79.49 Aligned_cols=230 Identities=13% Similarity=0.167 Sum_probs=153.0
Q ss_pred CeeEEEEccC-CCEEEEEeCCC-eEEEEECCCCceEEEEeccCc--cccccCcccCCCeEEEE----EeCCCeEEEEeCC
Q psy4869 407 AVMDLKFSTD-GCHIFTCSTDQ-TLAVWDLEKGQRIKKMKGHST--FVNSCDPVRRGQLLIAS----GSDDCTVKVWDPR 478 (2435)
Q Consensus 407 ~V~~l~~s~d-g~~L~s~s~Dg-~I~vwd~~tg~~v~~l~~h~~--~v~sv~~~~~~~~llas----gs~Dg~I~vwD~~ 478 (2435)
....++.+|+ ...++.+-.-| ...+||..+++....+..... .--.-.|++++..++++ ....|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 4456778884 44455555555 588999999988876653222 12234688999877766 3336889999998
Q ss_pred -CCcceEeec-CcccEEEEEECCCCCEEEEEec------------------CCeEEEEECCCCcEEEEEe----cCCCCE
Q psy4869 479 -KKNQAVSMN-NTYQVTSVAFNDTAECVLTGGI------------------DNDIKMWDLRTNSVVQKLR----GHSDTV 534 (2435)
Q Consensus 479 -~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~------------------dg~V~lwD~~s~~~v~~l~----~h~~~V 534 (2435)
..+.+..+. +.-....+.+.|||+.|+++.. +-.+...|.++|+++.+.. .|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 555555553 4445677889999988887631 2346667888999887743 378899
Q ss_pred EEEEEcCCCCEEEEEECCCc-------EEEEEcCCCCCCCceEEEEeCc---ccccccCeEEEEEcCCCCEEEEec-CCC
Q psy4869 535 TGLSLSPDGSYILSNAMDNT-------VRIWDIRPYVPGERCVKVMSGH---QHNFEKNLLRCAWSVSGLYVTAGS-ADK 603 (2435)
Q Consensus 535 ~~i~~spdg~~las~s~Dg~-------I~lWdl~~~~~~~~~v~~~~~h---~~~~~~~i~~v~~spdg~~Lasgs-~Dg 603 (2435)
..+++.++|..++..-..|. |-+++.. ..+..+... .......+-+++++.+|.++++.+ ..+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g------~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG------GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC------CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 99999999987776554432 2333322 112222211 122345688999999999887766 467
Q ss_pred eEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 604 CVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 604 ~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
.+.+||..+++++.... -..+..|+-.+++ ++++.+.-.
T Consensus 240 ~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred EEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCCcc
Confidence 89999999999987653 3446677777776 555554433
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0019 Score=77.55 Aligned_cols=240 Identities=14% Similarity=0.124 Sum_probs=156.3
Q ss_pred CEEEEEEcC-CCCEEEEEECCCc-EEEEEccCCceeEEEeccCCC--EEEEEEccCCCEEEEEeC-----CCcEEEEeCC
Q psy4869 1084 PVLSLDMSY-DSTLIATGSGDRT-VKVWGLDYGDCHKSLLAHEDS--VTGVTFVPKTHYFFTTSK-----DGRVKQWDAD 1154 (2435)
Q Consensus 1084 ~V~sl~~sp-dg~~L~Sgs~Dg~-I~vWd~~t~~~~~~l~~h~~~--V~~v~fsp~~~~l~s~s~-----Dg~V~iwD~~ 1154 (2435)
+...++.+| ....++.+-.-|. ..+||..+++....+....+. --...|++||++|++.-. .|.|-+||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345678888 4566667777665 678999999988777543222 235689999999998754 4789999998
Q ss_pred -CcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe------------------CCCcEEEEEccCCceeeEee----
Q psy4869 1155 -NFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS------------------GDRTVKVWGLDYGDCHKSLL---- 1211 (2435)
Q Consensus 1155 -~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs------------------~Dg~V~iwd~~t~~~~~~~~---- 1211 (2435)
....+..+ ..+.-.-..+.+.|||..|+++- ++-.+...|..+|+.+.+..
T Consensus 86 ~~~~ri~E~------~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 86 RGYRRIGEF------PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred CCcEEEeEe------cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 44444443 35666667788999997777652 13345666778888776633
Q ss_pred ccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccc
Q psy4869 1212 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADE 1291 (2435)
Q Consensus 1212 ~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~ 1291 (2435)
.|...|+.+++.+++..++..=+.|.-. ... ..++.-..++.+...++.
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~-----~~~----------------PLva~~~~g~~~~~~~~p---------- 208 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPG-----DAP----------------PLVALHRRGGALRLLPAP---------- 208 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCC-----ccC----------------CeEEEEcCCCcceeccCC----------
Confidence 3777899999988876555443333210 000 012222222223333221
Q ss_pred cccccccccceeeeeecccccccccEEEEEecCCcceeEEee-cCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCE
Q psy4869 1292 ETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTL 1370 (2435)
Q Consensus 1292 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs-~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~ 1370 (2435)
......+...+-+|+++++|.++++.+ ..|.+.+||..+++++....-. .+..++..+++ +
T Consensus 209 ---------------~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f 270 (305)
T PF07433_consen 209 ---------------EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-F 270 (305)
T ss_pred ---------------hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-e
Confidence 011235678899999999999988776 6778999999999987766633 35666666666 6
Q ss_pred EEEEeCCC
Q psy4869 1371 IATGSGDR 1378 (2435)
Q Consensus 1371 L~sGg~Dg 1378 (2435)
+++.+...
T Consensus 271 ~~ssG~G~ 278 (305)
T PF07433_consen 271 LVSSGQGQ 278 (305)
T ss_pred EEeCCCcc
Confidence 66665544
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0029 Score=76.84 Aligned_cols=276 Identities=17% Similarity=0.117 Sum_probs=167.6
Q ss_pred CcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEe----------CCCeEEEEEccCCceeecccccccceeEEEE
Q psy4869 906 SQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGT----------KDGRLLIVDIGAGEILEDIPAHSQELWSVAM 975 (2435)
Q Consensus 906 ~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~----------~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~ 975 (2435)
+.|.|+|.++++.+-.++.+.... +..+||++.+++.. ....|.+||.++.++...+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k------- 88 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK------- 88 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-------
T ss_pred ceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-------
Confidence 478999999999999998766664 67899999988632 234556666665554433211000
Q ss_pred ecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEE
Q psy4869 976 LPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL 1055 (2435)
Q Consensus 976 s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~L 1055 (2435)
++.+.. .....++++.||+++
T Consensus 89 --------------------------------------------------~R~~~~---------~~~~~~~ls~dgk~~ 109 (342)
T PF06433_consen 89 --------------------------------------------------PRAQVV---------PYKNMFALSADGKFL 109 (342)
T ss_dssp ---------------------------------------------------B--BS-----------GGGEEE-TTSSEE
T ss_pred --------------------------------------------------chheec---------ccccceEEccCCcEE
Confidence 000000 001124778888888
Q ss_pred EEEECC--CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEcc-CCceeEEEe----ccCCCE-
Q psy4869 1056 AVSLLD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD-YGDCHKSLL----AHEDSV- 1127 (2435)
Q Consensus 1056 avg~~d--g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~-t~~~~~~l~----~h~~~V- 1127 (2435)
++.... ..|.|.|+...+.+..+..- +...-.-+. .+.+.+-+.||.+.-..++ .|+...... .-.+++
T Consensus 110 ~V~N~TPa~SVtVVDl~~~kvv~ei~~P-GC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f 186 (342)
T PF06433_consen 110 YVQNFTPATSVTVVDLAAKKVVGEIDTP-GCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLF 186 (342)
T ss_dssp EEEEESSSEEEEEEETTTTEEEEEEEGT-SEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-
T ss_pred EEEccCCCCeEEEEECCCCceeeeecCC-CEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccc
Confidence 877543 67999999999998887632 222222222 2457788999999999986 566543321 112222
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeec-------ccccCeEEEEEeCCCCEEEEEeC--------
Q psy4869 1128 TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLY-------GHKLPVLSLDMSYDSTLIATGSG-------- 1192 (2435)
Q Consensus 1128 ~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~s~dg~~l~sgs~-------- 1192 (2435)
..-++...+..++.-+.+|.|+-.|+........ .....+. -..+.-.-+++++..++|++--.
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~-~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG-KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE-EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred cccceECCCCeEEEEecCCEEEEEeccCCccccc-CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 2334444556677789999999999876653222 1111110 01234455778876666665321
Q ss_pred C--CcEEEEEccCCceeeEeeccCCCEEEEEEeeCCC-EEEEEE-CCCcEEEEECCCCceEEEEe
Q psy4869 1193 D--RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH-YFFTTS-KDGRVKQWDADNFERIVTLH 1253 (2435)
Q Consensus 1193 D--g~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~-~lvsgs-~Dg~I~vwD~~~~~~v~~~~ 1253 (2435)
| ..|.++|+.+++.+..+.. ..++.+|..+.+.+ +|++.+ .++.|.+||..+++.+..+.
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 1 2388889999998888853 34678999998776 444444 57899999999998887765
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0260|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=7e-05 Score=98.51 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=5.7
Q ss_pred HHHHHHHHHHh
Q psy4869 778 RLRKLKKKEKK 788 (2435)
Q Consensus 778 ~~~~~~k~~~~ 788 (2435)
-++++++.+.+
T Consensus 680 ~I~~ak~dv~~ 690 (1605)
T KOG0260|consen 680 TIKEAKRDVLA 690 (1605)
T ss_pred HHHHHHHHHHH
Confidence 35555555553
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.7e-05 Score=98.35 Aligned_cols=180 Identities=11% Similarity=0.125 Sum_probs=131.4
Q ss_pred CCeEEEEEeCCCeEEEEeCCCCcceEeecCcc-cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEE
Q psy4869 459 GQLLIASGSDDCTVKVWDPRKKNQAVSMNNTY-QVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGL 537 (2435)
Q Consensus 459 ~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~-~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i 537 (2435)
++..++-|+....+..+|+++.+......... .+.-|+ .+++++.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 45567778888889999999887766654333 455555 467899999999999999999999999999999999766
Q ss_pred EEcCCCCEEEEEEC---------CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCC-CEEEEecCCCeEEE
Q psy4869 538 SLSPDGSYILSNAM---------DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSG-LYVTAGSADKCVYI 607 (2435)
Q Consensus 538 ~~spdg~~las~s~---------Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg-~~Lasgs~Dg~V~i 607 (2435)
+. .|+.|++++. |.-|+|||+|+.. .+..+.-+. ...-+.|.|.- ..++..+..|.+.+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr----al~PI~~~~-----~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR----ALSPIQFPY-----GPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhh----ccCCccccc-----CchhhhhcccccceEEEEecccceee
Confidence 55 5999999885 5668999999632 111111111 11224555532 45777888899999
Q ss_pred EE---CCCCc-EEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 608 WD---TTTRR-IAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 608 wd---~~s~~-~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
-| +.+.. -+..+......+.+++++++++.||.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 98 33331 1222223345599999999999999999999999998
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.4e-05 Score=90.21 Aligned_cols=285 Identities=21% Similarity=0.255 Sum_probs=180.8
Q ss_pred cCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccC--C-ccccccccccceEEEEEEEeCCCeEEEeeC-CCcEEEEEc
Q psy4869 157 GHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADT--G-DCFKTMAAHLTEVWGVCVMREDSYLISGSN-DAELKVWNV 232 (2435)
Q Consensus 157 gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~t--g-~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-Dg~v~vwdl 232 (2435)
-|...|+.+.-. --.++++++.||.++.|--.. | +.+..+..|.+.+..++.+-++..+.+++. |..++++|+
T Consensus 7 mhrd~i~hv~~t---ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT---KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee---hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 477777777653 235899999999999998543 2 346777899999999999999999999888 999999999
Q ss_pred CCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchh
Q psy4869 233 RDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTT 312 (2435)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (2435)
+.-.-+.-.+...+.+..+ .....|+. ++.+
T Consensus 84 En~DminmiKL~~lPg~a~------------------------wv~skGd~-----------~s~I-------------- 114 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAE------------------------WVTSKGDK-----------ISLI-------------- 114 (558)
T ss_pred eccchhhhcccccCCCceE------------------------EecCCCCe-----------eeeE--------------
Confidence 8643221111000000000 00000100 0000
Q ss_pred hhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecC
Q psy4869 313 QELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY 392 (2435)
Q Consensus 313 ~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~ 392 (2435)
.....+++.+.++|...... .+...-+-|..+|.++.+++-+..+++....|.|.-|...
T Consensus 115 -----AVs~~~sg~i~VvD~~~d~~---------------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 115 -----AVSLFKSGKIFVVDGFGDFC---------------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred -----EeecccCCCcEEECCcCCcC---------------ccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 01123455667776543211 1223344599999999999999999999999999999876
Q ss_pred Cceee--------------EEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccC
Q psy4869 393 GECEN--------------IGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR 458 (2435)
Q Consensus 393 ~~~~~--------------~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~ 458 (2435)
...+. +..+........++.|+|++..+.+-+.|..|++++..+|+.++.+..-.. ...+.+.
T Consensus 175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t---~~~~q~k 251 (558)
T KOG0882|consen 175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT---DAQYQPK 251 (558)
T ss_pred CcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch---hhhhccc
Confidence 31110 111233467788999999999999999999999999999998887764221 1111222
Q ss_pred CCeEEEEEeCCCeEEEEeCCCCcceE---ee--cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEe
Q psy4869 459 GQLLIASGSDDCTVKVWDPRKKNQAV---SM--NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR 528 (2435)
Q Consensus 459 ~~~llasgs~Dg~I~vwD~~~~~~~~---~~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~ 528 (2435)
.+..+ -++.-+.... .+ .....-..+.|...|++|+-|+--| |+++++.+++.++.+.
T Consensus 252 s~y~l-----------~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 252 SPYGL-----------MHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred ccccc-----------ceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 21111 1111111110 01 1122345678999999999887544 7888888888777664
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0027 Score=84.88 Aligned_cols=287 Identities=14% Similarity=0.052 Sum_probs=168.8
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCCc------CEE--EEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEecc
Q psy4869 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL------PVL--SLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1123 (2435)
Q Consensus 1052 g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~------~V~--sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h 1123 (2435)
+..++++..++.|..+|..+++.+-.+..... .+. .+... ++..++.++.++.|+.+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45677777789999999998887776643322 111 11111 2267888899999999999999998887643
Q ss_pred CCC--EEEEEEcc--CCCEEEEEe---------CCCcEEEEeCCCcceeEEEEEEEee----c---------ccc-cCeE
Q psy4869 1124 EDS--VTGVTFVP--KTHYFFTTS---------KDGRVKQWDADNFERIVTLHFFISL----Y---------GHK-LPVL 1176 (2435)
Q Consensus 1124 ~~~--V~~v~fsp--~~~~l~s~s---------~Dg~V~iwD~~~~~~~~~~~~~~~~----~---------~h~-~~V~ 1176 (2435)
... -..+.-+| .+..++.++ .++.|..+|..+++.+......... . .+. ..+.
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 321 01111112 124455553 3678999999999988876521100 0 000 1111
Q ss_pred -EEEEeCCCCEEEEEeCCC------------------cEEEEEccCCceeeEeec--cCC----CEEEEEEe----eCCC
Q psy4869 1177 -SLDMSYDSTLIATGSGDR------------------TVKVWGLDYGDCHKSLLA--HED----SVTGVTFV----PKTH 1227 (2435)
Q Consensus 1177 -~l~~s~dg~~l~sgs~Dg------------------~V~iwd~~t~~~~~~~~~--h~~----~V~~i~~s----pd~~ 1227 (2435)
..++.+.+..++.++.++ .|.-+|.++|+.+..++. |.. ......+. -++.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 234445567788887665 799999999998877642 211 00111111 1232
Q ss_pred ---EEEEEECCCcEEEEECCCCceEEEEeeC--CcccccCceEEEEEE------------------CCCeEEEEEccccc
Q psy4869 1228 ---YFFTTSKDGRVKQWDADNFERIVTLHFN--PNVYLPLQIQVVTGG------------------GDKSVKLWQLELVS 1284 (2435)
Q Consensus 1228 ---~lvsgs~Dg~I~vwD~~~~~~v~~~~~~--~~~~~~~~~~lv~g~------------------~d~~v~iwdl~~~~ 1284 (2435)
.++.++.+|.+...|.++++.+...... .....+ ..++.+. .++.+...|+...+
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 5778889999999999999988876543 122222 3333322 34667777776655
Q ss_pred ccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC
Q psy4869 1285 VNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG 1354 (2435)
Q Consensus 1285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~ 1354 (2435)
...+......... .........-...-.+..+.+++.+|.|+.+|.++++.+..++.
T Consensus 378 ~~W~~~~~~~~~~-------------~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 378 VVWEKREGTIRDS-------------WNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EeeEeeCCccccc-------------cccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 5444332100000 00000110001112567888899999999999999999888774
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0024 Score=86.13 Aligned_cols=273 Identities=12% Similarity=0.097 Sum_probs=164.6
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceE
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
-.+.|.++.|.-+++-++.+..+|.|.+-|..... ......-.+.|.+++|+||++.++....++++.+-+- +-.++
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i 143 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPI 143 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccch
Confidence 34789999999999999999999999999865432 2233445789999999999999999988887765442 22222
Q ss_pred EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc-----c------eEeecCcccEEEEEECCCCCEEEEE--
Q psy4869 441 KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN-----Q------AVSMNNTYQVTSVAFNDTAECVLTG-- 507 (2435)
Q Consensus 441 ~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~-----~------~~~~~~~~~v~sv~~sp~g~~l~sg-- 507 (2435)
..-.-+.+ -. +...++.++....=.-+....++ . .........-.++.|--||+++|+.
T Consensus 144 ~E~~L~~d------~~--~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 144 AEKPLDAD------DE--RKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred hccccccc------cc--cccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence 21111100 00 00112233322211111111110 0 1111123334578999999999983
Q ss_pred ---ecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEE---CCCcEEEEEcCCCCCCCceEEEEeCcccccc
Q psy4869 508 ---GIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNA---MDNTVRIWDIRPYVPGERCVKVMSGHQHNFE 581 (2435)
Q Consensus 508 ---s~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s---~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~ 581 (2435)
.....|++||-+ |.+-..-+...+.=.+++|-|.|.++++-. .|+.|.+|.-..... +. +.-.....+
T Consensus 216 ~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-g~----f~l~~p~de 289 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-GE----FVLPFPLDE 289 (1265)
T ss_pred eccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-cc----cccCCcccc
Confidence 233789999987 544333333344456799999999999743 467888887542211 11 111111122
Q ss_pred cCeEEEEEcCCCCEEEE---ecCCCeEEEEECCCCc--EEEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEecC
Q psy4869 582 KNLLRCAWSVSGLYVTA---GSADKCVYIWDTTTRR--IAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGES 652 (2435)
Q Consensus 582 ~~i~~v~~spdg~~Las---gs~Dg~V~iwd~~s~~--~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~I~vWd~ 652 (2435)
..+..++|+.++..|+. ......|++|-..+.. +...+....... +.|+|... .|..-..+|...+.++
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 34889999999999988 4445569999998763 344444433333 88999544 4444446776666554
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00081 Score=87.36 Aligned_cols=208 Identities=19% Similarity=0.223 Sum_probs=137.6
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCC-----eEEEEE
Q psy4869 931 VCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDK-----SVKLWQ 1005 (2435)
Q Consensus 931 vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg-----~V~lW~ 1005 (2435)
-+|++.+..+++|+.+|.|.+.+ ++-+++..++++...+...-|.-++ ...|++.+.|+ .|++|+
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~---------~~~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNK---------QNFLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccC---------ceEEEEEeecCCCCceEEEEec
Confidence 36778899999999999998876 3345668888888773333333332 25777777765 499999
Q ss_pred cccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC----CCeEEEEEecC
Q psy4869 1006 LELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLD----TFKFFISLYGH 1081 (2435)
Q Consensus 1006 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~----~~~~~~~l~~h 1081 (2435)
++...- ...+.....+++ ..........++.+++.+.+-+.+|+|-.+|.|..+.-+ .+....-....
T Consensus 99 lek~~~-----n~sP~c~~~~ri---~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~ 170 (933)
T KOG2114|consen 99 LEKVDK-----NNSPQCLYEHRI---FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG 170 (933)
T ss_pred ccccCC-----CCCcceeeeeee---eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC
Confidence 874321 111111111111 111111235688999999999999999999999999643 12222222335
Q ss_pred CcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc-eeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q psy4869 1082 KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD-CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1157 (2435)
Q Consensus 1082 ~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~-~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~ 1157 (2435)
..+|+.+.+..++..++-...-..|.+|.+.... .+..+..|...++|..|++....+++++. ..|.+||....+
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred CCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence 6789999999998774444445579999987333 24557778889999999976665666554 679999977543
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00031 Score=83.78 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=78.7
Q ss_pred EEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCC-CeEE
Q psy4869 141 IVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRED-SYLI 219 (2435)
Q Consensus 141 I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~-~~l~ 219 (2435)
|+..+..+.+...-+.+|...|.+++|+|...+ ++..++.+.+|+|.|+++..++..+..| ..+|+.||.-+. .+++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 555555555556667788899999999976554 6889999999999999999999999888 899999998865 4688
Q ss_pred EeeCCCcEEEEEcCCCC
Q psy4869 220 SGSNDAELKVWNVRDRS 236 (2435)
Q Consensus 220 s~s~Dg~v~vwdl~~~~ 236 (2435)
.|-..|.|.+||++...
T Consensus 253 aGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EeccCceEEEEEccCCC
Confidence 99999999999999653
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.2e-05 Score=64.98 Aligned_cols=39 Identities=26% Similarity=0.772 Sum_probs=37.0
Q ss_pred CceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1388 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1388 gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
|+++..+++|.++|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.001 Score=89.64 Aligned_cols=242 Identities=11% Similarity=0.096 Sum_probs=152.0
Q ss_pred cccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEE
Q psy4869 1171 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1250 (2435)
Q Consensus 1171 h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~ 1250 (2435)
....|.++.|..+...++.+..+|.|.+-|.++.. +.....-...|.+++|+||++.++..+.++++.+- ...+.++.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~m-T~~f~~i~ 144 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFM-TKDFEPIA 144 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEE-eccccchh
Confidence 34689999999999999999999999999988765 34455667899999999999999999887777653 33333333
Q ss_pred EEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeE
Q psy4869 1251 TLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1330 (2435)
Q Consensus 1251 ~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~la 1330 (2435)
.-.+... .....+.+..|..++-.-+.-........... ..............-..|.|--||++||
T Consensus 145 E~~L~~d--~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~-----------~~ek~~~~~~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 145 EKPLDAD--DERKSKFVNVGWGRKETQFRGSEGRQAARQKI-----------EKEKALEQIEQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred ccccccc--cccccccceecccccceeeecchhhhcccccc-----------cccccccchhhccCCceEEEccCCcEEE
Confidence 2222100 01112344444444322222111100000000 0000000111233445689999999999
Q ss_pred Eee-----cCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEeCCCCceEE----Eecccc
Q psy4869 1331 VSL-----LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS---GDRTVKVWGLDYGDCHK----SLLAHE 1398 (2435)
Q Consensus 1331 vgs-----~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg---~Dg~V~iwdl~~gk~~~----~~~~h~ 1398 (2435)
+.. ....++|||.+ +.+-..-+...+--.+++|-|.|..|++-. .|+.|.+|.-. |-.+. .++...
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccc
Confidence 943 33579999987 554444444445567899999999998854 45568887632 32222 233334
Q ss_pred cceEEEEEeeCCCEEEE---EeCCCcEEEEECCC
Q psy4869 1399 DSVTGVTFVPKTHYFFT---TSKDGRVKQWDADN 1429 (2435)
Q Consensus 1399 ~~V~~laf~P~~~~laS---gg~Dg~V~lWd~~~ 1429 (2435)
..|..|+|+.++..||. ......|.+|-..+
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 45999999999999987 44555699999997
|
|
| >KOG0260|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00021 Score=94.20 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=5.9
Q ss_pred cchhhhheeeeeec
Q psy4869 1629 FSSELEEVLLVLSL 1642 (2435)
Q Consensus 1629 ~~~~~~~~~~~~~~ 1642 (2435)
|.+=|.|.++|+-|
T Consensus 1318 r~a~~~e~~~vi~f 1331 (1605)
T KOG0260|consen 1318 RKALLRELLNVISF 1331 (1605)
T ss_pred HhhhhhhhhheEee
Confidence 33334444444444
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00019 Score=93.04 Aligned_cols=182 Identities=15% Similarity=0.216 Sum_probs=138.2
Q ss_pred CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccc
Q psy4869 373 DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNS 452 (2435)
Q Consensus 373 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~s 452 (2435)
++..++.|+....+..+|+++..... ...-..+.|.-+. .+++.+++|...|+|.+-|..+.+.++++..|.+.+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r-~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR-TTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee-eeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 45677888888888889987654322 1222223355454 36789999999999999999999999999999999987
Q ss_pred cCcccCCCeEEEEEeC---------CCeEEEEeCCCCcceEeecCcccEEEEEECCC-CCEEEEEecCCeEEEEECC---
Q psy4869 453 CDPVRRGQLLIASGSD---------DCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDT-AECVLTGGIDNDIKMWDLR--- 519 (2435)
Q Consensus 453 v~~~~~~~~llasgs~---------Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~-g~~l~sgs~dg~V~lwD~~--- 519 (2435)
++.. | +++++++. |..|+|||+|..+.+.-+.......-+.|+|. ...+++.+..|...+.|..
T Consensus 223 fDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 7643 3 46667665 66789999998887777766666677888885 4578888999999999943
Q ss_pred CC-cEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q psy4869 520 TN-SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560 (2435)
Q Consensus 520 s~-~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl 560 (2435)
+. .-+..+......+..++++++|..|+.|..+|.|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 33 123333444556999999999999999999999999983
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0053 Score=80.05 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=107.3
Q ss_pred EEEeCCCeEEEEe---CCCCcceEeecCcccEEEEEEC--------CCCCEEEEEecCCeEEEEECCC-----CcEEEEE
Q psy4869 464 ASGSDDCTVKVWD---PRKKNQAVSMNNTYQVTSVAFN--------DTAECVLTGGIDNDIKMWDLRT-----NSVVQKL 527 (2435)
Q Consensus 464 asgs~Dg~I~vwD---~~~~~~~~~~~~~~~v~sv~~s--------p~g~~l~sgs~dg~V~lwD~~s-----~~~v~~l 527 (2435)
+..+.||...+.. .+.+..+..+.....-..+.|+ ++|++...+ ++.|.++|.++ .+.+..+
T Consensus 240 v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI 317 (635)
T PRK02888 240 VDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV 317 (635)
T ss_pred ceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE
Confidence 3445566544444 3444444444222222444454 467776663 67899999998 3444544
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCC----CceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC
Q psy4869 528 RGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPG----ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD 602 (2435)
Q Consensus 528 ~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~----~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D 602 (2435)
. -.....+|.++|||+++++++ .+.+|.|.|+...... -+......+. ...........|.++|+...+--.|
T Consensus 318 P-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae-vevGlGPLHTaFDg~G~aytslf~d 395 (635)
T PRK02888 318 P-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE-PELGLGPLHTAFDGRGNAYTTLFLD 395 (635)
T ss_pred E-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe-eccCCCcceEEECCCCCEEEeEeec
Confidence 4 345568899999999988766 5999999999853210 0000111111 1112345678999999988888999
Q ss_pred CeEEEEECCC----------CcEEEEec-----CCCCCeeEEEEcCCCCEEEEEEC
Q psy4869 603 KCVYIWDTTT----------RRIAYKLP-----GHNGSVNDVQFHPKEPIIMSASS 643 (2435)
Q Consensus 603 g~V~iwd~~s----------~~~~~~l~-----~h~~~V~~l~fspd~~~Lasgs~ 643 (2435)
..|-.||+.. ...+..+. ||......=.-.|||++|++...
T Consensus 396 sqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 396 SQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred ceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 9999999875 33444443 33322222334688999988753
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0005 Score=88.77 Aligned_cols=184 Identities=15% Similarity=0.176 Sum_probs=133.8
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEE
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1119 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~ 1119 (2435)
...++|++++ +++|+.|..+|.|++++.+..- .....|... .-+|.++++|+.||.|.|-.+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3456677665 6799999999999999977543 333345443 56899999999999999999988876655
Q ss_pred EeccCCCEEEEEEccC-----CCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCC
Q psy4869 1120 LLAHEDSVTGVTFVPK-----THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDR 1194 (2435)
Q Consensus 1120 l~~h~~~V~~v~fsp~-----~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg 1194 (2435)
+. ...++..|+++|+ .+++++|+.-| +.++.-+=....... ......++|.++.|. |++||-+..+|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v----~l~~~eG~I~~i~W~--g~lIAWand~G 180 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV----VLSEGEGPIHSIKWR--GNLIAWANDDG 180 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce----eeecCccceEEEEec--CcEEEEecCCC
Confidence 54 4568999999996 56899999888 877764422222221 234678999999997 78888887776
Q ss_pred cEEEEEccCCceeeEeeccCCC------EEEEEEeeCCCEEEEEECCCcEEEEECC
Q psy4869 1195 TVKVWGLDYGDCHKSLLAHEDS------VTGVTFVPKTHYFFTTSKDGRVKQWDAD 1244 (2435)
Q Consensus 1195 ~V~iwd~~t~~~~~~~~~h~~~------V~~i~~spd~~~lvsgs~Dg~I~vwD~~ 1244 (2435)
|++||..+++.+..+...... -..+.|.++.+ ++-||..+|++..++
T Consensus 181 -v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 -VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIK 233 (846)
T ss_pred -cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEe
Confidence 999999998877666533332 34567765554 344788888888777
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0099 Score=72.33 Aligned_cols=243 Identities=16% Similarity=0.108 Sum_probs=148.6
Q ss_pred EEecCCCcEEEEecC-----------CcEEEEeCCCCceeEEEeCCC--eE------EEEEEecCCCEEEE--EeCCCeE
Q psy4869 891 LAFSSDNLALVSACA-----------SQVKIWNRPSLSCLRTIDTGS--YA------LSVCFVPGDRHVLV--GTKDGRL 949 (2435)
Q Consensus 891 la~s~dg~~la~g~~-----------~~V~Iwd~~~~~~~~~l~~~~--~v------~~vafspdg~~Lav--g~~dg~V 949 (2435)
++.+|||+.+.+..- ..|.+||.+++....++..+. .. ...+++.||+++++ .+.-..|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 677899998887432 589999999999988776332 12 24678899999988 4467889
Q ss_pred EEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEccc-ccccccccccccccccccce
Q psy4869 950 LIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLEL-VSVNREADEETKDVSRSHKV 1028 (2435)
Q Consensus 950 ~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~-~~~~~~~~~~~~~~~~~~~~ 1028 (2435)
.|.|++.++++..++.. .++.+--.++ ..|.+-+.||.+....++. ++.. . ...+.
T Consensus 121 tVVDl~~~kvv~ei~~P--GC~~iyP~~~-----------~~F~~lC~DGsl~~v~Ld~~Gk~~-~---------~~t~~ 177 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTP--GCWLIYPSGN-----------RGFSMLCGDGSLLTVTLDADGKEA-Q---------KSTKV 177 (342)
T ss_dssp EEEETTTTEEEEEEEGT--SEEEEEEEET-----------TEEEEEETTSCEEEEEETSTSSEE-E---------EEEEE
T ss_pred EEEECCCCceeeeecCC--CEEEEEecCC-----------CceEEEecCCceEEEEECCCCCEe-E---------eeccc
Confidence 99999999998877532 3444332332 3688889999999998862 2211 0 00000
Q ss_pred eeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE--EEEEec----------CCcCEEEEEEcCCCCE
Q psy4869 1029 LSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF--FISLYG----------HKLPVLSLDMSYDSTL 1096 (2435)
Q Consensus 1029 l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~--~~~l~~----------h~~~V~sl~~spdg~~ 1096 (2435)
.....+.-+..-++...+..++--+.+|.|+-.++..... ...+.- -.+.-.-+++++..+.
T Consensus 178 ------F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 178 ------FDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp ------SSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred ------cCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 0011111122334555555454455688888887765432 222210 1122334577776655
Q ss_pred EEEEEC---CC-------cEEEEEccCCceeEEEeccCCCEEEEEEccCCC-EEEEE-eCCCcEEEEeCCCcceeEEEE
Q psy4869 1097 IATGSG---DR-------TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH-YFFTT-SKDGRVKQWDADNFERIVTLH 1163 (2435)
Q Consensus 1097 L~Sgs~---Dg-------~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~-~l~s~-s~Dg~V~iwD~~~~~~~~~~~ 1163 (2435)
|+.-.. ++ .|.++|+.+++.+.++... ..+.+|..+.+.+ +|++. ..++.+.+||..+++.+..+.
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 555322 11 4788899999999988742 3477888888665 56554 457899999999998877764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0041 Score=81.04 Aligned_cols=300 Identities=13% Similarity=0.068 Sum_probs=170.4
Q ss_pred EEEEEECCCcEEEEEccCCceeEEEecc-------------CCCEE-----------------EEEEc---cCCCEEEEE
Q psy4869 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAH-------------EDSVT-----------------GVTFV---PKTHYFFTT 1142 (2435)
Q Consensus 1096 ~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h-------------~~~V~-----------------~v~fs---p~~~~l~s~ 1142 (2435)
.+.||+..|.|+|+-+.+++.+..+... ...|. .+.+. .||++|+.-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 3567888888888888877766654210 00010 11111 156777766
Q ss_pred eC-CCcEEEEeCCCcceeEEEEEEEeecccc---------cCeE-----EEEEeCCCCEEEEE-eCCCcEEEEEccCCce
Q psy4869 1143 SK-DGRVKQWDADNFERIVTLHFFISLYGHK---------LPVL-----SLDMSYDSTLIATG-SGDRTVKVWGLDYGDC 1206 (2435)
Q Consensus 1143 s~-Dg~V~iwD~~~~~~~~~~~~~~~~~~h~---------~~V~-----~l~~s~dg~~l~sg-s~Dg~V~iwd~~t~~~ 1206 (2435)
.. +.+|-..+++..+....+........|. ..|. .+-+.+||+.+... -..+.+.++|.++.+.
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence 53 4566666666655444333111111111 1111 22234456544332 2346677888887777
Q ss_pred eeEeeccCCCEEEEEEeeCCCEEEEEEC----CCcEEEEECCCCceEEEEeeCCc-ccccCceEEEEEECCCeEEEEEcc
Q psy4869 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSK----DGRVKQWDADNFERIVTLHFNPN-VYLPLQIQVVTGGGDKSVKLWQLE 1281 (2435)
Q Consensus 1207 ~~~~~~h~~~V~~i~~spd~~~lvsgs~----Dg~I~vwD~~~~~~v~~~~~~~~-~~~~~~~~lv~g~~d~~v~iwdl~ 1281 (2435)
..++.-.. ....+.+++++.++++.+. ...+...+......+..+..... .+...+..... .+++|.+.|.+
T Consensus 228 ~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~ 304 (635)
T PRK02888 228 AWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGR 304 (635)
T ss_pred EEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECC
Confidence 66665433 4467889999999988862 23455555544443444433221 12222323332 36778888876
Q ss_pred cccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee-cCCeEEEEEcccceE------------
Q psy4869 1282 LVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-LDTTVKIFFLDTFKF------------ 1348 (2435)
Q Consensus 1282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs-~dG~V~v~d~~~~k~------------ 1348 (2435)
.... .........+.......++++|||+++++.+ .++.|.|+|+.+.+.
T Consensus 305 t~~~-----------------~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 305 KAAN-----------------AGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred cccc-----------------CCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 3100 0001122334566677899999999988755 688999999988552
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC----------CceEEEecc-----cccceEEEEEeeCCCEE
Q psy4869 1349 FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY----------GDCHKSLLA-----HEDSVTGVTFVPKTHYF 1413 (2435)
Q Consensus 1349 i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~----------gk~~~~~~~-----h~~~V~~laf~P~~~~l 1413 (2435)
+...+...+ ....+|+++|+...+--.|..|-.|++.. .+++.++.- |.....+=.-.|+|.+|
T Consensus 368 vaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l 446 (635)
T PRK02888 368 VAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWL 446 (635)
T ss_pred EEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEE
Confidence 444444333 34578999999888888999999999987 344444443 32222223346677777
Q ss_pred EEE
Q psy4869 1414 FTT 1416 (2435)
Q Consensus 1414 aSg 1416 (2435)
++.
T Consensus 447 ~~~ 449 (635)
T PRK02888 447 VSL 449 (635)
T ss_pred EEc
Confidence 764
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.023 Score=76.25 Aligned_cols=301 Identities=15% Similarity=0.146 Sum_probs=169.6
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCCe--E----------EEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSY--A----------LSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI 963 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~--v----------~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~ 963 (2435)
+|+.+++...+.|.-+|.++++.+..++.... + +.+++ .+..|++++.++.|+..|.++|+++...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 55555555567888889999998877764321 1 11222 2456778889999999999999988766
Q ss_pred cccccc-eeEEEEecCCCCCCCcCCcceEEEEEeC------CCeEEEEEccccccccccccccccccc---------ccc
Q psy4869 964 PAHSQE-LWSVAMLPDQFNPNVYLPLQIQVVTGGG------DKSVKLWQLELVSVNREADEETKDVSR---------SHK 1027 (2435)
Q Consensus 964 ~~h~~~-V~sv~~s~d~~~~~~~~p~~~~l~sgs~------Dg~V~lW~l~~~~~~~~~~~~~~~~~~---------~~~ 1027 (2435)
...... -..+.-.|- -.+..++.+.. +|.|..+|.+.++.............. ...
T Consensus 147 ~~~~~~~~~~~tssP~--------v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~ 218 (527)
T TIGR03075 147 KNGDYKAGYTITAAPL--------VVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP 218 (527)
T ss_pred ccccccccccccCCcE--------EECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence 431110 000110110 00124555432 688988888877665543221111000 000
Q ss_pred eeeeeecccccc-CCCEE-EEEEcCCCCEEEEEECC-----C-----------cEEEEEcCCCeEEEEEecCCcCEEE--
Q psy4869 1028 VLSLLHTRTLKL-EEQVL-CARVSPDSKLLAVSLLD-----T-----------TVKIFFLDTFKFFISLYGHKLPVLS-- 1087 (2435)
Q Consensus 1028 ~l~~~~~~~~~~-~~~v~-~l~~spdg~~Lavg~~d-----g-----------~V~i~d~~~~~~~~~l~~h~~~V~s-- 1087 (2435)
-........... .+.+. .+++++...+|+++..+ + .|.-.|.++++..-.++.....+.+
T Consensus 219 ~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d 298 (527)
T TIGR03075 219 GAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYD 298 (527)
T ss_pred ccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcccc
Confidence 000000001111 11222 45788888888877632 2 5677788899988877642222221
Q ss_pred -------EEEcCCCC---EEEEEECCCcEEEEEccCCceeEEEe-----------c-cC-CC------------------
Q psy4869 1088 -------LDMSYDST---LIATGSGDRTVKVWGLDYGDCHKSLL-----------A-HE-DS------------------ 1126 (2435)
Q Consensus 1088 -------l~~spdg~---~L~Sgs~Dg~I~vWd~~t~~~~~~l~-----------~-h~-~~------------------ 1126 (2435)
+.+..+|+ .++.+..+|.+.+.|.++|+.+...+ . .. .+
T Consensus 299 ~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~ 378 (527)
T TIGR03075 299 GVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVG 378 (527)
T ss_pred CCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeE
Confidence 22234665 78889999999999999998762210 0 00 00
Q ss_pred ----------EEEEEEccCCCEEEEEeCC---------------------------------CcEEEEeCCCcceeEEEE
Q psy4869 1127 ----------VTGVTFVPKTHYFFTTSKD---------------------------------GRVKQWDADNFERIVTLH 1163 (2435)
Q Consensus 1127 ----------V~~v~fsp~~~~l~s~s~D---------------------------------g~V~iwD~~~~~~~~~~~ 1163 (2435)
-..++++|+..+++....+ +.|.-+|+.+++.....+
T Consensus 379 ~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~ 458 (527)
T TIGR03075 379 VCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHK 458 (527)
T ss_pred ECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEec
Confidence 0125566655555443322 457777877777666553
Q ss_pred EEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeecc
Q psy4869 1164 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1213 (2435)
Q Consensus 1164 ~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h 1213 (2435)
. ..+...-.+.-.+..++.++.||.++.+|.++|+.+..++-.
T Consensus 459 ~-------~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 459 E-------DFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred C-------CCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 1 111111111124567888888999999999999998877643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0026 Score=76.29 Aligned_cols=248 Identities=13% Similarity=0.080 Sum_probs=139.8
Q ss_pred EEeeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeC
Q psy4869 399 GVMSGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477 (2435)
Q Consensus 399 ~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~ 477 (2435)
..+.+|...|++++|+|..+ ++..++.+..|+|.|+++...+..+..| ..+++|+|.-+..+.|..|-..|.|.|||+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 35667889999999999766 7888999999999999999988888888 779999999999999999999999999999
Q ss_pred CCCcceEe-e---cCcccEEEEEE------CCCCCEEEEEecCCeEEEEECC--CCcEEEEEe-cCCCCEEEEEEcCCCC
Q psy4869 478 RKKNQAVS-M---NNTYQVTSVAF------NDTAECVLTGGIDNDIKMWDLR--TNSVVQKLR-GHSDTVTGLSLSPDGS 544 (2435)
Q Consensus 478 ~~~~~~~~-~---~~~~~v~sv~~------sp~g~~l~sgs~dg~V~lwD~~--s~~~v~~l~-~h~~~V~~i~~spdg~ 544 (2435)
+..+-... + ....+|..++. .+.|.+++....+ +..|.+. .+.....++ +..+...++.+.+-.+
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN 343 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence 86553222 1 12233444333 2344455544433 2233322 122222121 1234444555555434
Q ss_pred EEEEEE-CCC---cEEEEEcCCCCCCCceEEE-EeCcccccccCe---EEEEEcCCCCEEEE-ecCCCeEEEEECCCCcE
Q psy4869 545 YILSNA-MDN---TVRIWDIRPYVPGERCVKV-MSGHQHNFEKNL---LRCAWSVSGLYVTA-GSADKCVYIWDTTTRRI 615 (2435)
Q Consensus 545 ~las~s-~Dg---~I~lWdl~~~~~~~~~v~~-~~~h~~~~~~~i---~~v~~spdg~~Las-gs~Dg~V~iwd~~s~~~ 615 (2435)
.++..- .+. +++.-=.+.....+.++.. -.++.......+ ..+.-.++.++|+. |..-+.+.+||..+++.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 443322 110 0110000000001111111 011100000000 01111345555554 45567899999999999
Q ss_pred EEEecCCCCCeeEEEEcCC-C-CEEEEEECCCcEEEec
Q psy4869 616 AYKLPGHNGSVNDVQFHPK-E-PIIMSASSDKTIYLGE 651 (2435)
Q Consensus 616 ~~~l~~h~~~V~~l~fspd-~-~~Lasgs~Dg~I~vWd 651 (2435)
++.+.- ..+|.+++...- + .+|+.=.+| .++|+.
T Consensus 424 vQ~l~~-~epv~Dicp~~~n~~syLa~LTd~-~v~Iyk 459 (463)
T KOG1645|consen 424 VQTLAL-SEPVLDICPNDTNGSSYLALLTDD-RVHIYK 459 (463)
T ss_pred eeeccc-CcceeecceeecCCcchhhheecc-eEEEEe
Confidence 998854 477887776542 2 255554433 455544
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.6 Score=62.90 Aligned_cols=155 Identities=8% Similarity=0.049 Sum_probs=103.7
Q ss_pred CCEEEEEEcCC-CCEEEEEEC----------CCcEEEEEcCCCeEEEEEec--CCcCEEEEEEcCCCCEEEEEECCCcEE
Q psy4869 1041 EQVLCARVSPD-SKLLAVSLL----------DTTVKIFFLDTFKFFISLYG--HKLPVLSLDMSYDSTLIATGSGDRTVK 1107 (2435)
Q Consensus 1041 ~~v~~l~~spd-g~~Lavg~~----------dg~V~i~d~~~~~~~~~l~~--h~~~V~sl~~spdg~~L~Sgs~Dg~I~ 1107 (2435)
..+.+..|..| +.++++|.. .|.|.||.+..++.+..+.. -.+.+.++.. -+|++|| +-+..|+
T Consensus 775 ~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA--~In~~vr 851 (1096)
T KOG1897|consen 775 LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA--GINQSVR 851 (1096)
T ss_pred eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE--ecCcEEE
Confidence 45556678887 778888862 48899998876443333332 2355666543 2455554 6677899
Q ss_pred EEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcce-eEEEEEEEeecccccCeEEEEEeCCCCE
Q psy4869 1108 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER-IVTLHFFISLYGHKLPVLSLDMSYDSTL 1186 (2435)
Q Consensus 1108 vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~-~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 1186 (2435)
+|++.+++.++.-..+..++..+...-.+..+++|.--+.+.+...+..+. ...+ .-.-+.....++.+- +++.
T Consensus 852 Lye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev----ArD~~p~Wmtaveil-~~d~ 926 (1096)
T KOG1897|consen 852 LYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV----ARDYNPNWMTAVEIL-DDDT 926 (1096)
T ss_pred EEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe----ehhhCccceeeEEEe-cCce
Confidence 999998877777777888899998888999999999888887766554331 1111 112345556666665 4556
Q ss_pred EEEEeCCCcEEEEEccC
Q psy4869 1187 IATGSGDRTVKVWGLDY 1203 (2435)
Q Consensus 1187 l~sgs~Dg~V~iwd~~t 1203 (2435)
++.+..+|.+.+...++
T Consensus 927 ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 927 YLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EEeecccccEEEEEecC
Confidence 66667788888776553
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0005 Score=87.72 Aligned_cols=307 Identities=14% Similarity=0.056 Sum_probs=172.1
Q ss_pred EEecCCCcEEEEec-----CCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccc
Q psy4869 891 LAFSSDNLALVSAC-----ASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPA 965 (2435)
Q Consensus 891 la~s~dg~~la~g~-----~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~ 965 (2435)
..|.|...++|++. .|.|.||- ++|+.-..+.-+..+.++||.|..-.|+.|..-|.+.||...+.+.-.-...
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t 99 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET 99 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence 45556666666543 37788874 3444444444555667899999888899999999999999887776666678
Q ss_pred cccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEE
Q psy4869 966 HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1045 (2435)
Q Consensus 966 h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 1045 (2435)
|..+|..+.|++++ ..++++..-|.|.+|..+.... + +....+.. .+...-...|
T Consensus 100 h~a~i~~l~wS~~G----------~~l~t~d~~g~v~lwr~d~~g~----------~-q~~~~~~h----el~~~ltl~c 154 (1416)
T KOG3617|consen 100 HPAPIQGLDWSHDG----------TVLMTLDNPGSVHLWRYDVIGE----------I-QTSNIMQH----ELNDQLTLWC 154 (1416)
T ss_pred CCCCceeEEecCCC----------CeEEEcCCCceeEEEEeeeccc----------c-ccchhhhh----HhhceeeEEE
Confidence 99999999999997 7999999999999999862110 0 00001110 1111123467
Q ss_pred EEEcCCCC------EEEEEECCCcEE-EEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE
Q psy4869 1046 ARVSPDSK------LLAVSLLDTTVK-IFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1046 l~~spdg~------~Lavg~~dg~V~-i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~ 1118 (2435)
.++++++. ..++.+.+..+- .++.......+... | .=.|+|..++.++.+|+|+..|- .|++..
T Consensus 155 fRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~GtVyyvdq-~g~~~~ 225 (1416)
T KOG3617|consen 155 FRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGTVYYVDQ-NGRQRT 225 (1416)
T ss_pred EecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCceEEEEcC-CCcEEE
Confidence 77888753 233333332222 33322110000110 1 11367888888999999888773 344444
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC----------------Ccce---------eEEEEEEE-eecccc
Q psy4869 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD----------------NFER---------IVTLHFFI-SLYGHK 1172 (2435)
Q Consensus 1119 ~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~----------------~~~~---------~~~~~~~~-~~~~h~ 1172 (2435)
..+.... -.+.|.+....+++--.+-++.++-+. .+.. ...+.... .-....
T Consensus 226 V~k~dS~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~g 303 (1416)
T KOG3617|consen 226 VHKLDSE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELG 303 (1416)
T ss_pred EEEccch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcC
Confidence 4332111 112222211111111111111111110 0000 00000000 001234
Q ss_pred cCeEEEEEeCCCCEEEEEeCCCcEEEEEc-cCC------ceeeEee---ccCCCEEEEEEeeCCCEEEEEEC
Q psy4869 1173 LPVLSLDMSYDSTLIATGSGDRTVKVWGL-DYG------DCHKSLL---AHEDSVTGVTFVPKTHYFFTTSK 1234 (2435)
Q Consensus 1173 ~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~-~t~------~~~~~~~---~h~~~V~~i~~spd~~~lvsgs~ 1234 (2435)
..++|+++...+..+..|...|.+.+|-- ..+ +-...++ .-.+.|+.|.|.|--..+++.+.
T Consensus 304 e~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 304 EGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTE 375 (1416)
T ss_pred CceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhh
Confidence 57999999999999999999999999953 221 2223332 34568999999985554444443
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0027 Score=82.75 Aligned_cols=212 Identities=17% Similarity=0.179 Sum_probs=143.1
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCC-EEEEEEeeCCCEEEEEECCCc-----EEEEECCCCceEEEE
Q psy4869 1179 DMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS-VTGVTFVPKTHYFFTTSKDGR-----VKQWDADNFERIVTL 1252 (2435)
Q Consensus 1179 ~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~-V~~i~~spd~~~lvsgs~Dg~-----I~vwD~~~~~~v~~~ 1252 (2435)
+|++.+..++.|+.+|.|.+++-. .+.++.++.+... |..+....+.++|++.+.|+. +++||+...+.-..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s- 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS- 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC-
Confidence 456788899999999999888754 4445777777776 666665556678888887664 56666643221000
Q ss_pred eeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEe
Q psy4869 1253 HFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVS 1332 (2435)
Q Consensus 1253 ~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavg 1332 (2435)
+. .+ +..+++-+. ......++.+++.+.+-+.+|+|
T Consensus 108 ---P~--------c~-----~~~ri~~~~----------------------------np~~~~p~s~l~Vs~~l~~Iv~G 143 (933)
T KOG2114|consen 108 ---PQ--------CL-----YEHRIFTIK----------------------------NPTNPSPASSLAVSEDLKTIVCG 143 (933)
T ss_pred ---cc--------ee-----eeeeeeccC----------------------------CCCCCCcceEEEEEccccEEEEE
Confidence 00 00 001111110 00124567888999999999999
Q ss_pred ecCCeEEEEEccc----ceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eEEEecccccceEEEEEe
Q psy4869 1333 LLDTTVKIFFLDT----FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD-CHKSLLAHEDSVTGVTFV 1407 (2435)
Q Consensus 1333 s~dG~V~v~d~~~----~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk-~~~~~~~h~~~V~~laf~ 1407 (2435)
..+|.|..+.=+- +....-......+|+.+++-.|++.++....-..|.+|.+.... .+..+..|...++|..|+
T Consensus 144 f~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~ 223 (933)
T KOG2114|consen 144 FTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFS 223 (933)
T ss_pred ecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecC
Confidence 9999999886432 21111222345789999999999986666677889999998444 244567788899999999
Q ss_pred eCCCEEEEEeCCCcEEEEECCCceeEEEEe
Q psy4869 1408 PKTHYFFTTSKDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1408 P~~~~laSgg~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
+..+-|+.++.. .|.++|.+.+++-.++.
T Consensus 224 ~~t~qfIca~~e-~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 224 DGTYQFICAGSE-FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CCCccEEEecCc-eEEEEcCCCcceeeeec
Confidence 988767766654 68999999877666665
|
|
| >PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ] | Back alignment and domain information |
|---|
Probab=97.58 E-value=2.1e-06 Score=100.59 Aligned_cols=159 Identities=14% Similarity=0.104 Sum_probs=114.4
Q ss_pred ccccceecccCCCCceeeeecCCchhhHHHhhhcCCccceeeeecCceeeee------cCCCCcccccccccccccceee
Q psy4869 1549 RGQKKLIASDCPNGSKVYYVNNSTTDIQKEIMQHGPVQAKFYFQDGKFRIYS------TDSPRRSTASTMWINKNACMKI 1622 (2435)
Q Consensus 1549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 1622 (2435)
+||||.+|..+|.-++|||+..++.+-.-......+..-..=-...+.+... ..++-..-+.....+.++---|
T Consensus 51 ~RNKPkeppKkPe~APFFLpt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~f~~lL~~~~~~~dy~~~~ 130 (237)
T PF04192_consen 51 ERNKPKEPPKKPEKAPFFLPTLPGLEPRFQDAFESEEEEEEEEERSRLRKLKKDNSLDFESEFTRLLRSASESEDYSEFL 130 (237)
T ss_pred HhCCCCCCCCCcCCCCcccCcCCCCCccccccccccccccchhhhhhhhhcccccCccccCHHHHHHHhhcccccHHHHH
Confidence 9999999999999999999977754322200000000000000001111111 1111112222334456677778
Q ss_pred eeeecccchhhhheeeeee------chhhhHHHHHhHhhhhcCCCceEEEeeeeeeeeeeccCcccccch---hhHHHHH
Q psy4869 1623 IIKKFLFSSELEEVLLVLS------LSQVTDLLTHLSSLLDSSHHRCELVIRVAVFLVRIHHGPLTASKE---LLPVLQR 1693 (2435)
Q Consensus 1623 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 1693 (2435)
+.||.+.+|.++--|..|. ......||++|...++.+.| +|||+.++..+||+|..-|..+.. |+..|.+
T Consensus 131 ~~LkslsPS~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~d-fElvQa~l~vFLk~Hgd~i~~~~~~~~L~~~l~~ 209 (237)
T PF04192_consen 131 EYLKSLSPSAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRRD-FELVQAYLSVFLKVHGDVIMESEEEEELREALEE 209 (237)
T ss_pred HHHHhCChhHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 9999999999999998887 66888999999999999888 999999999999999999999999 9999999
Q ss_pred HHHHHhcccccccCc
Q psy4869 1694 LEQLASRRVEEIRTP 1708 (2435)
Q Consensus 1694 ~~~~~~~~~~~~~~~ 1708 (2435)
|++...+.|+.|.+-
T Consensus 210 l~~~q~~~w~~L~~l 224 (237)
T PF04192_consen 210 LREAQESEWKRLDDL 224 (237)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988763
|
This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.034 Score=71.38 Aligned_cols=296 Identities=20% Similarity=0.175 Sum_probs=151.5
Q ss_pred cCCCCEEEEEE---------CCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEE
Q psy4869 1049 SPDSKLLAVSL---------LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1119 (2435)
Q Consensus 1049 spdg~~Lavg~---------~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~ 1119 (2435)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+|+.++... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888888743 246788999998765444333 56788999999999988765 57899999877744332
Q ss_pred Ee-c-------c---------CCCEEEEEEccCCCEEEEEeCC-CcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEe
Q psy4869 1120 LL-A-------H---------EDSVTGVTFVPKTHYFFTTSKD-GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMS 1181 (2435)
Q Consensus 1120 l~-~-------h---------~~~V~~v~fsp~~~~l~s~s~D-g~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 1181 (2435)
-. + - -+.-..+-|+||+++|+....| ..|+.+.+........ ..-.+..+.+-
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---------~yp~~~~~~YP 149 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---------QYPEVESIRYP 149 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---------SS-EEEEEE--
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---------cCCcccccccC
Confidence 11 1 0 1123578899999988876543 4444443221100000 00122233332
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCceeeE--e---eccCCCEEEEEEeeCCCEEEEEE--CCCc---EEEEECCCCceEEE
Q psy4869 1182 YDSTLIATGSGDRTVKVWGLDYGDCHKS--L---LAHEDSVTGVTFVPKTHYFFTTS--KDGR---VKQWDADNFERIVT 1251 (2435)
Q Consensus 1182 ~dg~~l~sgs~Dg~V~iwd~~t~~~~~~--~---~~h~~~V~~i~~spd~~~lvsgs--~Dg~---I~vwD~~~~~~v~~ 1251 (2435)
.-|..... -.+.++|+.+++.... . ..-..-+..+.|.++++.|+..- .+.. +.++|..+......
T Consensus 150 k~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~ 225 (353)
T PF00930_consen 150 KAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVV 225 (353)
T ss_dssp BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEE
T ss_pred CCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEE
Confidence 11211111 1367788888775321 1 13345788999999887444332 2211 22223322111110
Q ss_pred EeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEe-cCCcceeE
Q psy4869 1252 LHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV-SPDSKLLA 1330 (2435)
Q Consensus 1252 ~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~-spdg~~la 1330 (2435)
... ..++ .. .....+.| .+++..|+
T Consensus 226 ~~e---------------~~~~-------------------Wv--------------------~~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 226 LEE---------------TSDG-------------------WV--------------------DVYDPPHFLGPDGNEFL 251 (353)
T ss_dssp EEE---------------ESSS-------------------SS--------------------SSSSEEEE-TTTSSEEE
T ss_pred EEe---------------cCCc-------------------ce--------------------eeecccccccCCCCEEE
Confidence 000 0000 00 00012223 25555444
Q ss_pred -EeecCCeEEE--EEcccceEEEEecCCCCCeEE-EEEecCCCEEE-EEeCC----CcEEEEeCC-CCceEEEecccccc
Q psy4869 1331 -VSLLDTTVKI--FFLDTFKFFISLYGHKLPVLS-LDMSYDSTLIA-TGSGD----RTVKVWGLD-YGDCHKSLLAHEDS 1400 (2435)
Q Consensus 1331 -vgs~dG~V~v--~d~~~~k~i~~~~~h~~~V~~-la~spdg~~L~-sGg~D----g~V~iwdl~-~gk~~~~~~~h~~~ 1400 (2435)
....+|.-+| ++.+.+.. ..+....-.|.. +.|+++++.|+ +|..+ ..|+.-++. .+. +..+......
T Consensus 252 ~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~~~~ 329 (353)
T PF00930_consen 252 WISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCLTCEDGD 329 (353)
T ss_dssp EEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEESSTTSST
T ss_pred EEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEeccCCCCC
Confidence 4446675444 45555553 355555556744 67889877554 45442 356667777 444 4444433333
Q ss_pred eEEEEEeeCCCEEEE
Q psy4869 1401 VTGVTFVPKTHYFFT 1415 (2435)
Q Consensus 1401 V~~laf~P~~~~laS 1415 (2435)
-..+.|+|++.+++-
T Consensus 330 ~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 330 HYSASFSPDGKYYVD 344 (353)
T ss_dssp TEEEEE-TTSSEEEE
T ss_pred ceEEEECCCCCEEEE
Confidence 379999999988773
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.04 Score=73.92 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=70.6
Q ss_pred CCEEEEEECCCcEEEEEccCCceeEEEeccC-CCEE----------EEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1094 STLIATGSGDRTVKVWGLDYGDCHKSLLAHE-DSVT----------GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1094 g~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~-~~V~----------~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
+..|+.++.++.|+-.|..+|+.+..+.... ..+. .+++ .+..++.++.|+.|..+|.++++.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777888899999999999888765321 1111 1222 2356778889999999999999988775
Q ss_pred EEEEeecccc--cCeEEEEEeCCCCEEEEEe------CCCcEEEEEccCCceeeEee
Q psy4869 1163 HFFISLYGHK--LPVLSLDMSYDSTLIATGS------GDRTVKVWGLDYGDCHKSLL 1211 (2435)
Q Consensus 1163 ~~~~~~~~h~--~~V~~l~~s~dg~~l~sgs------~Dg~V~iwd~~t~~~~~~~~ 1211 (2435)
... .+. ..+.+--.-.++ .++++. .+|.|+.+|.++|+.+..+.
T Consensus 147 ~~~----~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNG----DYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccc----cccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 421 111 111111001133 555553 26899999999999876654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0013 Score=85.10 Aligned_cols=173 Identities=19% Similarity=0.230 Sum_probs=125.7
Q ss_pred CCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEe
Q psy4869 35 EGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTF 113 (2435)
Q Consensus 35 ~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l 113 (2435)
.+++|+-| -.|.|.+++....-.. . + .|.. -+.+|.++|+++.||.|.|..+.+.+....+
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~~--------~---~-~~s~------~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPKT--------N---F-DHSS------SILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hcceeeeccccceEEEEecCCcccc--------c---c-cccc------cccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 57889998 7889999997532100 0 0 0111 1678999999999999999999999877766
Q ss_pred cCCCCCEEEEEEcCC-----CCEEEEEeCCCCEEEEEccC--CeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEE
Q psy4869 114 TGHKSAITVIQYDPL-----GHRLATGSKDTDIVLWDVVA--ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186 (2435)
Q Consensus 114 ~gH~~~V~~l~f~p~-----g~~laSgs~Dg~I~iWd~~~--~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~ 186 (2435)
. .+..+.+++++|+ .+++++||.-| +.++.-.= .+.-..+..-.|+|.++.|. +++++-++.+| |+
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~----g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR----GNLIAWANDDG-VK 182 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec----CcEEEEecCCC-cE
Confidence 5 4578999999997 47899999999 88876321 12122466777899999995 45788887777 99
Q ss_pred EEeccCCccccccccccceE------EEEEEEeCCCeEEEeeCCCcEEEEEcCC
Q psy4869 187 IWDADTGDCFKTMAAHLTEV------WGVCVMREDSYLISGSNDAELKVWNVRD 234 (2435)
Q Consensus 187 iWd~~tg~~~~~~~~h~~~V------~~l~~~p~~~~l~s~s~Dg~v~vwdl~~ 234 (2435)
++|+.+++.+..+......+ ..+.|.++. .++-|+..+|++..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEEecCCeEEEEEEec
Confidence 99999999887764433333 245565443 44457778899998883
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.014 Score=75.03 Aligned_cols=192 Identities=16% Similarity=0.278 Sum_probs=128.2
Q ss_pred eEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEEEC
Q psy4869 26 VVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSL 104 (2435)
Q Consensus 26 v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~ 104 (2435)
++-..-+...+.||+.| ..|.|.+|.-..+++.... . .|....++.++.+++..++|+|+..|.|.+|.+
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~----~-----~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK----N-----EGATGITCVRSVSSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhccc----c-----cCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence 33333445579999999 7899999998877766421 1 123444667888888889999999999999999
Q ss_pred CCCCe---EE---EecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC----eeEEEEecCCCcEEEEEEeecCCCc
Q psy4869 105 DTTDV---IS---TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE----CGLHRLSGHKGVITDIRFMSQPGHH 174 (2435)
Q Consensus 105 ~~~~~---~~---~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~----~~~~~l~gH~~~V~~v~~~~~~~~~ 174 (2435)
....+ +. .-..|...|+|+.|++++..|.+|..-|.|.+-.+... ...+.+-.-.+.|-.|.+. +..
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~---q~~ 182 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL---QSY 182 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc---cce
Confidence 87532 11 11237899999999999999999999999998887762 1234445566789999885 445
Q ss_pred EEEEEeCCCcEEEEeccCCcccccc-ccccce--EEEEEEEeC----CCeEEEeeCCCcEEEEEcC
Q psy4869 175 FVVSSAKDTFVKIWDADTGDCFKTM-AAHLTE--VWGVCVMRE----DSYLISGSNDAELKVWNVR 233 (2435)
Q Consensus 175 ~l~S~s~Dg~I~iWd~~tg~~~~~~-~~h~~~--V~~l~~~p~----~~~l~s~s~Dg~v~vwdl~ 233 (2435)
+|++...-. .+++++.+. ++++ +..+.. -++.||-|. ..-++.++.=| .|+|..+
T Consensus 183 LLVStl~r~--~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead 244 (726)
T KOG3621|consen 183 LLVSTLTRC--ILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEAD 244 (726)
T ss_pred ehHhhhhhh--heeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEee
Confidence 666554433 455665544 3333 111222 467777764 33344444433 4888765
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0067 Score=77.93 Aligned_cols=143 Identities=14% Similarity=0.105 Sum_probs=100.8
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCccee
Q psy4869 1081 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1159 (2435)
Q Consensus 1081 h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~-~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~ 1159 (2435)
|...|.--+++..+++++.|+.-|.|++|+-..++....-. +....+.....+++..++++|+..|.|.++-++.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34445545566678999999999999999977665433322 24445666777888888999999999999988764332
Q ss_pred EEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc----eeeEeeccCCCEEEEEEe
Q psy4869 1160 VTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD----CHKSLLAHEDSVTGVTFV 1223 (2435)
Q Consensus 1160 ~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~----~~~~~~~h~~~V~~i~~s 1223 (2435)
........-..|...|++++|++++..+++|...|+|..-.+.+.. ....+..-...|-.|.+.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 2222111223478999999999999999999999999998887721 122333445667666664
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.093 Score=67.86 Aligned_cols=242 Identities=19% Similarity=0.224 Sum_probs=164.2
Q ss_pred CeeEEEEccCCCEEEEEeC-CCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe
Q psy4869 407 AVMDLKFSTDGCHIFTCST-DQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS 485 (2435)
Q Consensus 407 ~V~~l~~s~dg~~L~s~s~-Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~ 485 (2435)
....+...+++..++.... ...+...+................-..+...+.+....+....++.|.+.|.........
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 5566777787755544432 224555555422222222222133445677788888888888899999999888887777
Q ss_pred ecCcccEEEEEECCCCCEEEEEec---CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcC
Q psy4869 486 MNNTYQVTSVAFNDTAECVLTGGI---DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIR 561 (2435)
Q Consensus 486 ~~~~~~v~sv~~sp~g~~l~sgs~---dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~ 561 (2435)
.........++++++++.++++.. ++.+.+.|..+++.+.....-..+ ..++++|+|+.++... .+++|.+.|..
T Consensus 112 ~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 112 IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 766667889999999999888866 689999999999988886544445 8999999999777655 78999999976
Q ss_pred CCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC---CeEEEEECCCCcEEEE-ecCCCCCeeEEEEcCCCCE
Q psy4869 562 PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD---KCVYIWDTTTRRIAYK-LPGHNGSVNDVQFHPKEPI 637 (2435)
Q Consensus 562 ~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D---g~V~iwd~~s~~~~~~-l~~h~~~V~~l~fspd~~~ 637 (2435)
.. ...................+.++|+|+++...... +.+...|..++..... +..-......+.++|++..
T Consensus 191 ~~----~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~ 266 (381)
T COG3391 191 GN----SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKA 266 (381)
T ss_pred Cc----ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCE
Confidence 32 11110000011112244678999999976665443 6999999999887765 2221115677899999998
Q ss_pred EEEEECC-CcEEEecCC
Q psy4869 638 IMSASSD-KTIYLGESP 653 (2435)
Q Consensus 638 Lasgs~D-g~I~vWd~~ 653 (2435)
+.+.... +.+.+-|..
T Consensus 267 ~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 267 AYVANSQGGTVSVIDGA 283 (381)
T ss_pred EEEEecCCCeEEEEeCC
Confidence 8888555 566665543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.038 Score=71.78 Aligned_cols=220 Identities=18% Similarity=0.140 Sum_probs=119.5
Q ss_pred CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEE
Q psy4869 924 TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKL 1003 (2435)
Q Consensus 924 ~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~l 1003 (2435)
...++..+.++|+|+++++ ..+|.-.|+......-.. .+......|...+ .+++-...+.|.+
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-----------~yAv~~~~~~I~I 93 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-----------RYAVLESSSTIKI 93 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-----------EEEEE-TTS-EEE
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-----------cEEEEECCCeEEE
Confidence 5567889999999999999 567777777743333222 2344567888854 6888777888988
Q ss_pred EE-cccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCC
Q psy4869 1004 WQ-LELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK 1082 (2435)
Q Consensus 1004 W~-l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~ 1082 (2435)
+. ++.. . .+.++.+..+..+-. |.+|++.+ ++.|.+||+.+++.++.+...
T Consensus 94 ~kn~~~~--------~---------------~k~i~~~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~- 145 (443)
T PF04053_consen 94 YKNFKNE--------V---------------VKSIKLPFSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS- 145 (443)
T ss_dssp EETTEE---------T---------------T-----SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS--
T ss_pred EEcCccc--------c---------------ceEEcCCcccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC-
Confidence 64 2210 0 001122222233322 88888887 458999999999999999844
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEEccCC-----------ceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q psy4869 1083 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG-----------DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1151 (2435)
Q Consensus 1083 ~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~-----------~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iw 1151 (2435)
+|..+.|++++.+++..+.+ .+.+++.+.. .....+..-...|.+.+|..+ .++-.... +++.+
T Consensus 146 -~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl 220 (443)
T PF04053_consen 146 -AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL 220 (443)
T ss_dssp -E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE
T ss_pred -CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE
Confidence 38999999999999988765 6777765432 122333222567788888754 44444443 66663
Q ss_pred eCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q psy4869 1152 DADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202 (2435)
Q Consensus 1152 D~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~ 1202 (2435)
-.++. ..+. .-..++.-+.+.++.+.++....|+.|..+.+.
T Consensus 221 --~~Ge~-~~i~------~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 221 --VNGET-GIIA------HLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp --ETTEE-EEEE------E-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred --EcCCc-ceEE------EcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 22222 2221 124567777777777788888888888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.071 Score=68.44 Aligned_cols=214 Identities=15% Similarity=0.170 Sum_probs=129.2
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-------------------------------------------EEEEE
Q psy4869 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK-------------------------------------------FFISL 1078 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~-------------------------------------------~~~~l 1078 (2435)
.|..+.|+++..-|++|...|.|.||.....+ ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999999999999999999999653111 11112
Q ss_pred ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe--c------cCCCEEEEEEcc-----CC---CEEEEE
Q psy4869 1079 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL--A------HEDSVTGVTFVP-----KT---HYFFTT 1142 (2435)
Q Consensus 1079 ~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~--~------h~~~V~~v~fsp-----~~---~~l~s~ 1142 (2435)
....++|++++.+. =-+++.|..+|.+.|.|++....+..-. . ....+.++.|.- |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 23468899999874 4589999999999999997666655422 1 234688888873 33 367889
Q ss_pred eCCCcEEEEeCC-CcceeEEEEEEEeecccccCeEEEE-EeCC-----------------C---CEEEEEeCCCcEEEEE
Q psy4869 1143 SKDGRVKQWDAD-NFERIVTLHFFISLYGHKLPVLSLD-MSYD-----------------S---TLIATGSGDRTVKVWG 1200 (2435)
Q Consensus 1143 s~Dg~V~iwD~~-~~~~~~~~~~~~~~~~h~~~V~~l~-~s~d-----------------g---~~l~sgs~Dg~V~iwd 1200 (2435)
...|.+.+|.+. ................+.++|..|. ++.+ + ..+++...+..+|++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999875 2333333333333345667777665 3222 1 2244445577899999
Q ss_pred ccCCceeeEeeccCCCEEEEEEe-----eCCCEEEEEECCCcEEEEECCCCceEEEEeeCC
Q psy4869 1201 LDYGDCHKSLLAHEDSVTGVTFV-----PKTHYFFTTSKDGRVKQWDADNFERIVTLHFNP 1256 (2435)
Q Consensus 1201 ~~t~~~~~~~~~h~~~V~~i~~s-----pd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~ 1256 (2435)
..+.+.........-....+.+. ..+..|++-..+|.++++.+...+.+.......
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~ 302 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP 302 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC
Confidence 98887655544332334445553 356678888899999999999999998887653
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=7.3e-05 Score=93.43 Aligned_cols=197 Identities=20% Similarity=0.279 Sum_probs=130.7
Q ss_pred cEEEEEECCC--CCEEEEEeCCCeEEEEecCCceee-EEEeeCCCCCeeEEEEcc-CCCEEEEEe----CCCeEEEEECC
Q psy4869 364 EIFCSKYHPD--GQYIASSGYDRQIFIWSVYGECEN-IGVMSGHTGAVMDLKFST-DGCHIFTCS----TDQTLAVWDLE 435 (2435)
Q Consensus 364 ~V~~l~fspd--g~~Lasgs~Dg~I~iwd~~~~~~~-~~~l~~h~~~V~~l~~s~-dg~~L~s~s----~Dg~I~vwd~~ 435 (2435)
.+.|+++.-+ .-+++.|..+|.|.+-.++..... .....+|....++++|++ |...|++|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 4556655443 347889999999999887643222 334567889999999998 556677663 24579999998
Q ss_pred CC--ceEE--EEec-cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECC-CCCEEEEEec
Q psy4869 436 KG--QRIK--KMKG-HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFND-TAECVLTGGI 509 (2435)
Q Consensus 436 tg--~~v~--~l~~-h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp-~g~~l~sgs~ 509 (2435)
++ .+.. .+.+ -....++++|. ....++.+|.....++++|++........-....+..+.++| .++|+++-.
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred cccCCCccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-
Confidence 76 2221 1222 33445678887 445677888888899999998544333333344567778888 677776655
Q ss_pred CCeEEEEE-CCCCc-EEEEEecC----CCCEEEEEEcCCCC-EEEEEE-CCCcEEEEEcCC
Q psy4869 510 DNDIKMWD-LRTNS-VVQKLRGH----SDTVTGLSLSPDGS-YILSNA-MDNTVRIWDIRP 562 (2435)
Q Consensus 510 dg~V~lwD-~~s~~-~v~~l~~h----~~~V~~i~~spdg~-~las~s-~Dg~I~lWdl~~ 562 (2435)
||.|.+|| .++-+ ++..+... ...+..++|.|... .+++.. ..++|+++|+..
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 99999999 44322 22222211 23589999999643 344445 458899999873
|
|
| >PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00033 Score=65.10 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=62.4
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeeccCCC
Q psy4869 622 HNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDE 701 (2435)
Q Consensus 622 h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~ 701 (2435)
....|.++.|.|-+++|..|...|. ..+|++|+++.++|.++.++++.
T Consensus 8 ~~~~v~~~~F~PfEDvLgvGh~~G~--------------------------------sSiiVPGsGe~NfDs~e~NP~et 55 (80)
T PF08149_consen 8 PGSPVESLRFCPFEDVLGVGHSKGF--------------------------------SSIIVPGSGEPNFDSLEANPFET 55 (80)
T ss_pred CCCeeeeeEEechHHeeEeeccCce--------------------------------eEEeccCCCCCCCCcccCCcccc
Confidence 4567999999999999999987773 24688999999999999999999
Q ss_pred CchhHHHHHHhhccccccCCc
Q psy4869 702 SSTRCRKRLRKLKKKEKYESP 722 (2435)
Q Consensus 702 ~~~~~~k~~~k~~~k~~~e~~ 722 (2435)
+++|+++++++|++|.++||+
T Consensus 56 ~kqRrE~EV~~LLeKippd~I 76 (80)
T PF08149_consen 56 KKQRREREVRSLLEKIPPDMI 76 (80)
T ss_pred hhHHhHHHHHHHHHhCCccce
Confidence 999999999999999999976
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.061 Score=69.89 Aligned_cols=228 Identities=14% Similarity=0.149 Sum_probs=115.6
Q ss_pred eeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC
Q psy4869 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK 480 (2435)
Q Consensus 401 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~ 480 (2435)
+....-....+.++|+|+.++.++ ||.-.|+.....+.... | ......|...+ .+|+-...+.|.++.--..
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~--G---~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF--G---SGLSFVWSSRN--RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE--E---E-SEEEE-TSS--EEEEE-TTS-EEEEETTEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc--C---ceeEEEEecCc--cEEEEECCCeEEEEEcCcc
Confidence 334556689999999999888854 66777777433333222 2 12345666633 4666666888999743233
Q ss_pred cceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q psy4869 481 NQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560 (2435)
Q Consensus 481 ~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl 560 (2435)
.....+.....+..+-. |.+|...+.+ .|.+||+.+++.++.+... .|..|.|+++|.+++..+.| .+.|++.
T Consensus 100 ~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 100 EVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred ccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 33233433334444433 7777776544 8999999999999999744 38999999999999988755 6677665
Q ss_pred CCC------CCC-CceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcC
Q psy4869 561 RPY------VPG-ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHP 633 (2435)
Q Consensus 561 ~~~------~~~-~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fsp 633 (2435)
... ..+ ......... ....|.+.+|.-| -+|.+... +++.+ -+|+. ..+..-..++.=+...+
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E----~~~~IkSg~W~~d-~fiYtT~~--~lkYl--~~Ge~-~~i~~ld~~~yllgy~~ 242 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHE----ISERIKSGCWVED-CFIYTTSN--HLKYL--VNGET-GIIAHLDKPLYLLGYLP 242 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEE----E-S--SEEEEETT-EEEEE-TT--EEEEE--ETTEE-EEEEE-SS--EEEEEET
T ss_pred cchhcccccccCchhceEEEEE----ecceeEEEEEEcC-EEEEEcCC--eEEEE--EcCCc-ceEEEcCCceEEEEEEc
Confidence 421 000 001222211 1135667777754 33333332 55552 22321 12212245666677778
Q ss_pred CCCEEEEEECCCcEEEecCC
Q psy4869 634 KEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 634 d~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+.+.|+....|+.+..+.++
T Consensus 243 ~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 243 KENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTTEEEEE-TT--EEEEE--
T ss_pred cCCEEEEEECCCCEEEEEEC
Confidence 77888888888888888776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.16 Score=65.22 Aligned_cols=83 Identities=14% Similarity=0.234 Sum_probs=68.4
Q ss_pred eecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q psy4869 1306 LHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1385 (2435)
Q Consensus 1306 ~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl 1385 (2435)
......+++..+.|++++|+.+.|+.|+.||.|.+||...+-.. +....-.+..++|+|+|.++++|++-|.+.+||+
T Consensus 251 vsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 251 VSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred EEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 34455678899999999999999999999999999998765322 2233455788999999999999999999999998
Q ss_pred CCCce
Q psy4869 1386 DYGDC 1390 (2435)
Q Consensus 1386 ~~gk~ 1390 (2435)
.-.-+
T Consensus 329 ALspi 333 (545)
T PF11768_consen 329 ALSPI 333 (545)
T ss_pred ecCcc
Confidence 76543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.03 Score=72.52 Aligned_cols=184 Identities=18% Similarity=0.236 Sum_probs=115.2
Q ss_pred CCCCeeEEEEccCCCEEEEEe---CC-CeEEEEECCCCceEEEE--eccCccccccCcccCCCeEEEEEeCCCeE--EEE
Q psy4869 404 HTGAVMDLKFSTDGCHIFTCS---TD-QTLAVWDLEKGQRIKKM--KGHSTFVNSCDPVRRGQLLIASGSDDCTV--KVW 475 (2435)
Q Consensus 404 h~~~V~~l~~s~dg~~L~s~s---~D-g~I~vwd~~tg~~v~~l--~~h~~~v~sv~~~~~~~~llasgs~Dg~I--~vw 475 (2435)
-...+..-+|+++++.++-.. .. ..+.++|+++++....+ .++. ..-.|+|++..++.+...|+.. .++
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEE
Confidence 346677788999998766543 22 35999999988654444 3333 3457999999999999998874 555
Q ss_pred eCCCCcceEeecCccc-EEEEEECCCCCEEEEEecC-C--eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC
Q psy4869 476 DPRKKNQAVSMNNTYQ-VTSVAFNDTAECVLTGGID-N--DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM 551 (2435)
Q Consensus 476 D~~~~~~~~~~~~~~~-v~sv~~sp~g~~l~sgs~d-g--~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~ 551 (2435)
|+..+.... +.+... -..=.|+|||++++-.++. | .|.++|.+.+.. ..+....+.-..-.|+|||++|+..+.
T Consensus 268 dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 268 DLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred cCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEec
Confidence 666666333 433222 2355789999999877553 3 477778777665 333323332237789999999997764
Q ss_pred -CCc--EEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 552 -DNT--VRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 552 -Dg~--I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
+|. |.+.|+... .. ++.+.... ....-.|.++|+.+...+.
T Consensus 346 ~~g~~~i~~~~~~~~---~~-~~~lt~~~-----~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 346 SGGQWDIDKNDLASG---GK-IRILTSTY-----LNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCCceeeEEeccCCC---Cc-EEEccccc-----cCCCCCcCCCCceEEEecc
Confidence 344 445554421 11 33333221 1223567888887765543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.012 Score=76.17 Aligned_cols=199 Identities=18% Similarity=0.113 Sum_probs=121.3
Q ss_pred CceEEEEeccCccccccCcccCCCeEEEEEeCC---CeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEE-ecCC-
Q psy4869 437 GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD---CTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTG-GIDN- 511 (2435)
Q Consensus 437 g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D---g~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sg-s~dg- 511 (2435)
|.....+......+..-.|++++..+....-.. ..+.++|+.+++..........-..-+|+|||+.|+.. ..||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 433444444444455667888876654442222 45899999988887777666666677899999988765 3444
Q ss_pred -eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEE
Q psy4869 512 -DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSN-AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589 (2435)
Q Consensus 512 -~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~-s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~ 589 (2435)
.|+++|+..+...+ +..-.+.-..=.|+|||++|+-. +..|.-.||-.... +..+..+..... .-..-.|
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~---g~~~~riT~~~~----~~~~p~~ 333 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE---GSQVTRLTFSGG----GNSNPVW 333 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC---CCceeEeeccCC----CCcCccC
Confidence 47888988877433 43323333366899999998854 45676666655432 122222221111 1115679
Q ss_pred cCCCCEEEEecCC-Ce--EEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECC
Q psy4869 590 SVSGLYVTAGSAD-KC--VYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 590 spdg~~Lasgs~D-g~--V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~D 644 (2435)
+|||++|+..+.. |. |.+.|+.++..+..+ .+......-+|.++++.|+..+.-
T Consensus 334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 334 SPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccC
Confidence 9999999887743 43 666777666543333 334444556777888766655433
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.093 Score=64.89 Aligned_cols=228 Identities=16% Similarity=0.180 Sum_probs=133.1
Q ss_pred CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE---------
Q psy4869 373 DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM--------- 443 (2435)
Q Consensus 373 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l--------- 443 (2435)
.++.|+.|+.+| |.+++........... +...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 578899999998 8898884322222222 233499999999877777765 599999998754333210
Q ss_pred -----eccCccccccC--cccCCCeEEEEEeCCCeEEEEeCCCC-----cceEeecCcccEEEEEECCCCCEEEEEecCC
Q psy4869 444 -----KGHSTFVNSCD--PVRRGQLLIASGSDDCTVKVWDPRKK-----NQAVSMNNTYQVTSVAFNDTAECVLTGGIDN 511 (2435)
Q Consensus 444 -----~~h~~~v~sv~--~~~~~~~llasgs~Dg~I~vwD~~~~-----~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg 511 (2435)
......+..++ -...+...++ ......|.+|..... +....+.....+.+++|. ++.+++|.. .
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~-~ 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS-K 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC-C
Confidence 01112233222 1123333333 344458888876542 455566777889999998 567777764 4
Q ss_pred eEEEEECCCCcEEEEEecC------------CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc
Q psy4869 512 DIKMWDLRTNSVVQKLRGH------------SDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~~h------------~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~ 579 (2435)
...+.|+.++.....+... ..++..+... ++.+|++ .|..-.+-|... .+..+..-.+.
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~--~~~~g~fv~~~G-~~~r~~~i~W~----- 228 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC--YDNIGVFVNKNG-EPSRKSTIQWS----- 228 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE--ecceEEEEcCCC-CcCcccEEEcC-----
Confidence 4788999977664433211 1233333443 4555554 344444445431 11111111121
Q ss_pred cccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCC
Q psy4869 580 FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGH 622 (2435)
Q Consensus 580 ~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h 622 (2435)
.....+.+. ..||++...++ |.||++.++++++.+..+
T Consensus 229 --~~p~~~~~~--~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 229 --SAPQSVAYS--SPYLIAFSSNS-IEVRSLETGELVQTIPLP 266 (275)
T ss_pred --CchhEEEEE--CCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence 133444443 56788777654 999999999999988643
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.12 Score=66.33 Aligned_cols=293 Identities=12% Similarity=0.071 Sum_probs=138.1
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC---cceeE
Q psy4869 1084 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN---FERIV 1160 (2435)
Q Consensus 1084 ~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~---~~~~~ 1160 (2435)
.|..+.|.++...|++|...|.|.||.+...+.-. ......-....|.+- ...++.-.+-|+.. .....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999886543221 000000111111110 01112233334432 22222
Q ss_pred EEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEe--ec------cCCCEEEEEEee-----CC-
Q psy4869 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL--LA------HEDSVTGVTFVP-----KT- 1226 (2435)
Q Consensus 1161 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~--~~------h~~~V~~i~~sp-----d~- 1226 (2435)
.+.+...+....++|.+++.+ |=-++++|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 344444556678999999998 4459999999999999999877655442 22 234688888863 22
Q ss_pred --CEEEEEECCCcEEEEECC-CCceEEEEeeCCcccccCceEEEEEECCCeEEE--EEcccccccccccccccccccccc
Q psy4869 1227 --HYFFTTSKDGRVKQWDAD-NFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKL--WQLELVSVNREADEETKDVSRSHK 1301 (2435)
Q Consensus 1227 --~~lvsgs~Dg~I~vwD~~-~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~i--wdl~~~~~~~~~~~~~~~~~~~~~ 1301 (2435)
-.+++|...|.+.+|.+- ....-+...+... .....+..+.+ .+......... ...
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~---------~~~~~~~i~~I~~i~~~~G~~a~A----------t~~ 214 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA---------TTNHDSPILSIIPINADTGESALA----------TIS 214 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE---------E--SS----EEEEEETTT--B-B-----------BHH
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeec---------cccCCCceEEEEEEECCCCCcccC----------chh
Confidence 457777788888877653 1111111110000 00111111111 21111110000 000
Q ss_pred eeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEE-----ecCCCEEEEEeC
Q psy4869 1302 VLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDM-----SYDSTLIATGSG 1376 (2435)
Q Consensus 1302 ~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~-----spdg~~L~sGg~ 1376 (2435)
.+ .....+. .-..+++...+..++++...+.+.........-....+.+ ...+..|++-..
T Consensus 215 ---~~--~~l~~g~---------~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~ 280 (395)
T PF08596_consen 215 ---AM--QGLSKGI---------SIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN 280 (395)
T ss_dssp ---HH--HGGGGT-------------EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET
T ss_pred ---Hh--hccccCC---------CcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC
Confidence 00 0000000 1133555566888999999887765554433223333444 235678888899
Q ss_pred CCcEEEEeCCCCceEEEeccc----ccceEEEEEeeCCCEEEEEeC
Q psy4869 1377 DRTVKVWGLDYGDCHKSLLAH----EDSVTGVTFVPKTHYFFTTSK 1418 (2435)
Q Consensus 1377 Dg~V~iwdl~~gk~~~~~~~h----~~~V~~laf~P~~~~laSgg~ 1418 (2435)
+|.|++|.+..=+.+...+-+ ...+....+.++|..|+-.|.
T Consensus 281 ~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 281 NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred CCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 999999999987777655432 224556666777776665543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.18 Score=64.65 Aligned_cols=294 Identities=17% Similarity=0.141 Sum_probs=152.0
Q ss_pred cCCCcEEEEecC----------CcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc
Q psy4869 894 SSDNLALVSACA----------SQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI 963 (2435)
Q Consensus 894 s~dg~~la~g~~----------~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~ 963 (2435)
|||+++++...+ +.+.|||+.+++...............|||+|++|+... ++.|++++..+++..+-.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 578888777443 689999999976554333345566789999999998765 578999988777543221
Q ss_pred -ccc----------------ccceeEEEEecCCCCCCCcCCcceEEEEEeC-CCeEEEEEcccccccccccccccccccc
Q psy4869 964 -PAH----------------SQELWSVAMLPDQFNPNVYLPLQIQVVTGGG-DKSVKLWQLELVSVNREADEETKDVSRS 1025 (2435)
Q Consensus 964 -~~h----------------~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~-Dg~V~lW~l~~~~~~~~~~~~~~~~~~~ 1025 (2435)
.+. .+.-.++-|+||+ .+|+.... +..|..+.+.......
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~----------~~la~~~~d~~~v~~~~~~~~~~~~------------ 137 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS----------KYLAFLRFDEREVPEYPLPDYSPPD------------ 137 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTS----------SEEEEEEEE-TTS-EEEEEEESSST------------
T ss_pred cccceeEEcCccceeccccccccccceEECCCC----------CEEEEEEECCcCCceEEeeccCCcc------------
Confidence 110 1122456677765 45554433 3444444432100000
Q ss_pred cceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE-EE----ecCCcCEEEEEEcCCCCEEEE-
Q psy4869 1026 HKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI-SL----YGHKLPVLSLDMSYDSTLIAT- 1099 (2435)
Q Consensus 1026 ~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~-~l----~~h~~~V~sl~~spdg~~L~S- 1099 (2435)
. ....+..+.+-.-|.-... -.+.|+++.+++... .. ..-..-+..+.|.+++..|+.
T Consensus 138 -~-----------~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 138 -S-----------QYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -E-----------SS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred -c-----------cCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 0 0012333333322322211 136667777765421 21 123445889999999883433
Q ss_pred -EECCC---cEEEEEccCCceeEEEec-cCCC---EEEEEEc-cCCC-EEEEEeCCCcEEEE--eCCCcceeEEEEEEEe
Q psy4869 1100 -GSGDR---TVKVWGLDYGDCHKSLLA-HEDS---VTGVTFV-PKTH-YFFTTSKDGRVKQW--DADNFERIVTLHFFIS 1167 (2435)
Q Consensus 1100 -gs~Dg---~I~vWd~~t~~~~~~l~~-h~~~---V~~v~fs-p~~~-~l~s~s~Dg~V~iw--D~~~~~~~~~~~~~~~ 1167 (2435)
...+. .+.+.|..++++...+.. .... .....|. +++. ++.....||.-++| +...+.. . .
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~------~ 274 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-R------Q 274 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-E------E
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-e------c
Confidence 33333 366778777765444432 2222 2355554 5544 55555677765555 4444331 1 1
Q ss_pred ecccccCeEE-EEEeCCCCEEE-EEeCC----CcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE
Q psy4869 1168 LYGHKLPVLS-LDMSYDSTLIA-TGSGD----RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1168 ~~~h~~~V~~-l~~s~dg~~l~-sgs~D----g~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs 1233 (2435)
+....-.|.. +.++++++.|+ ++..+ ..|...++..+..+..+....+.-..+.|+|++++++-..
T Consensus 275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 2234555644 66777766554 55542 2455556662233444443333337999999998877544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.31 Score=60.89 Aligned_cols=296 Identities=16% Similarity=0.095 Sum_probs=129.9
Q ss_pred EcCCCeEEEEEecCCcCEEEE-----EEcCCCCEEEEEEC-CC--cEEEEEccCCceeEEEeccCCCEEEEEEccCCCEE
Q psy4869 1068 FLDTFKFFISLYGHKLPVLSL-----DMSYDSTLIATGSG-DR--TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF 1139 (2435)
Q Consensus 1068 d~~~~~~~~~l~~h~~~V~sl-----~~spdg~~L~Sgs~-Dg--~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l 1139 (2435)
|..++-.+..+..+...-..+ +|.+||+.|+-++. || .+.+.|+++++..+--.+..........+++.+.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 344555555554333322222 56778866555444 55 56677888887665544332333356667888877
Q ss_pred EEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEE--eCCCCEEEEEe---C-------------------CCc
Q psy4869 1140 FTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM--SYDSTLIATGS---G-------------------DRT 1195 (2435)
Q Consensus 1140 ~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~--s~dg~~l~sgs---~-------------------Dg~ 1195 (2435)
+-...+..|+-.|+++.+...... ....-+-...| +.++..++..- . ...
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~------~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYE------VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred EEEECCCeEEEEECCcCcEEEEEE------CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 666566789999999876544332 22233323344 34555543221 0 223
Q ss_pred EEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEEC----CCc-EEEEECCCCceEEEEeeCCcccccCceEEEEEE
Q psy4869 1196 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK----DGR-VKQWDADNFERIVTLHFNPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1196 V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~----Dg~-I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~ 1270 (2435)
|...|+.+|+.. .+..-...+..+.|+|....+++=+. |.. -++|=++.
T Consensus 170 i~~idl~tG~~~-~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~------------------------- 223 (386)
T PF14583_consen 170 IFTIDLKTGERK-VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT------------------------- 223 (386)
T ss_dssp EEEEETTT--EE-EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-------------------------
T ss_pred EEEEECCCCcee-EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-------------------------
Confidence 555566666633 33344556777888884433333322 211 12332211
Q ss_pred CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee-----cCCeEEEEEccc
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-----LDTTVKIFFLDT 1345 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs-----~dG~V~v~d~~~ 1345 (2435)
|+. .+|.+. .+ .....+..=-|.|||..+..-+ .+..|.-+|+++
T Consensus 224 -dg~-~~~~v~--------------------------~~--~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 224 -DGS-NVKKVH--------------------------RR--MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp -TS----EESS-------------------------------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred -CCC-cceeee--------------------------cC--CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 100 001111 01 1123444456788888766533 233566777777
Q ss_pred ceEEEEecCCCCCeEEEEEecCCCEEEEEeCCC----------------cEEEEeCCCCceEEEec---------cccc-
Q psy4869 1346 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDR----------------TVKVWGLDYGDCHKSLL---------AHED- 1399 (2435)
Q Consensus 1346 ~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg----------------~V~iwdl~~gk~~~~~~---------~h~~- 1399 (2435)
++....... .+...+-.++||++++-=|.|. -|++++++.++.....+ +|..
T Consensus 274 ~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~ 351 (386)
T PF14583_consen 274 GERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV 351 (386)
T ss_dssp --EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred CCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence 655333222 1344455578999876533331 56778888776543221 1111
Q ss_pred ceEEEEEeeCCCEEE-EEeCCCcEEEEEC
Q psy4869 1400 SVTGVTFVPKTHYFF-TTSKDGRVKQWDA 1427 (2435)
Q Consensus 1400 ~V~~laf~P~~~~la-Sgg~Dg~V~lWd~ 1427 (2435)
-=.-..|+||+.+++ ++..+|...|+-+
T Consensus 352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 352 THPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp T----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 125678999996554 6777787666643
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.28 Score=61.30 Aligned_cols=271 Identities=16% Similarity=0.166 Sum_probs=128.3
Q ss_pred EECCCCCEEEE-EeCCCe--EEEEecCCceeeEEEeeCCC-CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q psy4869 369 KYHPDGQYIAS-SGYDRQ--IFIWSVYGECENIGVMSGHT-GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK 444 (2435)
Q Consensus 369 ~fspdg~~Las-gs~Dg~--I~iwd~~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~ 444 (2435)
.|.++|+.|+- +..||. +.+.|+.+.. +..+.... .......++++++.++-...+..|+..|+++.+....+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 46778876554 445665 5555665543 23333322 223356677888888777777899999999987655555
Q ss_pred ccCccccccCcccC-CCeEEEEEe----------------------CCCeEEEEeCCCCcceEeecCcccEEEEEECCCC
Q psy4869 445 GHSTFVNSCDPVRR-GQLLIASGS----------------------DDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTA 501 (2435)
Q Consensus 445 ~h~~~v~sv~~~~~-~~~llasgs----------------------~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g 501 (2435)
.....+....|..+ +...++-.- -...|.-.|+.+++....+.....+.-+.|+|..
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 44444433333221 112221110 1335666778888877777777888999999965
Q ss_pred CEEE-EEec------CCeEEEEECCCCcEEEEEecCC--CCEEEEEEcCCCCEEEEEE-----CCCcEEEEEcCCCCCCC
Q psy4869 502 ECVL-TGGI------DNDIKMWDLRTNSVVQKLRGHS--DTVTGLSLSPDGSYILSNA-----MDNTVRIWDIRPYVPGE 567 (2435)
Q Consensus 502 ~~l~-sgs~------dg~V~lwD~~s~~~v~~l~~h~--~~V~~i~~spdg~~las~s-----~Dg~I~lWdl~~~~~~~ 567 (2435)
..++ -+.+ |.+|.+.+.+ +.....+..|. ..+..=-|.|||..|.--+ .+..|.-+|+.+. ..
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~--~~ 276 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG--ER 276 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT----E
T ss_pred CCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC--Cc
Confidence 5444 4432 2244444533 33334443332 2345557899998776422 2445555666532 11
Q ss_pred ceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC----------------eEEEEECCCCcEEE--E-------ecCC
Q psy4869 568 RCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK----------------CVYIWDTTTRRIAY--K-------LPGH 622 (2435)
Q Consensus 568 ~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg----------------~V~iwd~~s~~~~~--~-------l~~h 622 (2435)
+.+.... .....--++||++++-=+.|. .|++++++.++... . +.+|
T Consensus 277 ~~~~~~p--------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 277 RRLMEMP--------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD 348 (386)
T ss_dssp EEEEEE---------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred eEEEeCC--------ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence 1111111 234566678998876533331 56778887765421 1 2222
Q ss_pred CCC-eeEEEEcCCCCE-EEEEECCCcEEEecC
Q psy4869 623 NGS-VNDVQFHPKEPI-IMSASSDKTIYLGES 652 (2435)
Q Consensus 623 ~~~-V~~l~fspd~~~-Lasgs~Dg~I~vWd~ 652 (2435)
... =.-..|+||+++ |+.+...|...||=+
T Consensus 349 ~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 349 RQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp SSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 221 135799999994 556666776665543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.12 Score=63.91 Aligned_cols=221 Identities=15% Similarity=0.120 Sum_probs=130.3
Q ss_pred EEccCCCE-EEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee----
Q psy4869 412 KFSTDGCH-IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM---- 486 (2435)
Q Consensus 412 ~~s~dg~~-L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~---- 486 (2435)
.|.++... +.+--..+.|.-||..+++. ..+..+ ..+.+......+..++ ++. .-+.+++...+..+..+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d~~g~Lv-~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALIDAGGRLI-ACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeecCCCeEE-EEc--cccEEEeccCCceeEEecccc
Confidence 34555543 34444567788888876642 222222 2223333333433333 332 23556666544442222
Q ss_pred --cCcccEEEEEECCCCCEEEEEec-----------CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC-C
Q psy4869 487 --NNTYQVTSVAFNDTAECVLTGGI-----------DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM-D 552 (2435)
Q Consensus 487 --~~~~~v~sv~~sp~g~~l~sgs~-----------dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~-D 552 (2435)
......+.+...|+|.+-+.-.. -|.|+.+|. .+..++.+..|-..-++|+||||++.|+.+.. .
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 12356788899999987665433 144555555 56666666666666689999999988876654 5
Q ss_pred CcEEEEEcCC--CCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC-eEEEEECCCCcEEEEecCCCCCeeEE
Q psy4869 553 NTVRIWDIRP--YVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK-CVYIWDTTTRRIAYKLPGHNGSVNDV 629 (2435)
Q Consensus 553 g~I~lWdl~~--~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg-~V~iwd~~s~~~~~~l~~h~~~V~~l 629 (2435)
+.|.-|++.. .....+......... .+..-.++...+|.+.+++-.+| .|.+|+.. |+++..+.-....++++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~---~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEE---PGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCC---CCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 8888888762 111222111111111 12334566777888876555554 99999998 99999988777889999
Q ss_pred EEc-CCCCEEEEEE
Q psy4869 630 QFH-PKEPIIMSAS 642 (2435)
Q Consensus 630 ~fs-pd~~~Lasgs 642 (2435)
+|- |+.+.|+..+
T Consensus 261 ~FgG~~~~~L~iTs 274 (307)
T COG3386 261 AFGGPDLNTLYITS 274 (307)
T ss_pred eEeCCCcCEEEEEe
Confidence 995 4555544444
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.4 Score=62.04 Aligned_cols=280 Identities=16% Similarity=0.158 Sum_probs=178.1
Q ss_pred EEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeC-CCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcC
Q psy4869 908 VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYL 986 (2435)
Q Consensus 908 V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~-dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~ 986 (2435)
+.+++..+......+........+...+++..+.+... ...+.+.+................-..++..+.+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~------- 85 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAG------- 85 (381)
T ss_pred eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCC-------
Confidence 67777777777777776667778889998866665432 2245555544222222111111122344555543
Q ss_pred CcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEEC---CCc
Q psy4869 987 PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL---DTT 1063 (2435)
Q Consensus 987 p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~---dg~ 1063 (2435)
...++....+..|.+.+...... +. ..........++++++++.+.++.. ++.
T Consensus 86 --~~vyv~~~~~~~v~vid~~~~~~-----------------~~-----~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~ 141 (381)
T COG3391 86 --NKVYVTTGDSNTVSVIDTATNTV-----------------LG-----SIPVGLGPVGLAVDPDGKYVYVANAGNGNNT 141 (381)
T ss_pred --CeEEEecCCCCeEEEEcCcccce-----------------ee-----EeeeccCCceEEECCCCCEEEEEecccCCce
Confidence 12555555568888888432111 01 1122236678999999999998876 588
Q ss_pred EEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeE-E---EeccCCCEEEEEEccCCCE
Q psy4869 1064 VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHK-S---LLAHEDSVTGVTFVPKTHY 1138 (2435)
Q Consensus 1064 V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~-~---l~~h~~~V~~v~fsp~~~~ 1138 (2435)
+.+.|..+.+.+.....-..+ ..+++.|+|..++... .++.|.+.|........ . ...-...-..+.+.+++..
T Consensus 142 vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~ 220 (381)
T COG3391 142 VSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNR 220 (381)
T ss_pred EEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCE
Confidence 899999988888886654455 8899999999766655 78899999976555442 1 1112234467899999997
Q ss_pred EEEEeCC---CcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCCceeeEeeccC
Q psy4869 1139 FFTTSKD---GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHKSLLAHE 1214 (2435)
Q Consensus 1139 l~s~s~D---g~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~-Dg~V~iwd~~t~~~~~~~~~h~ 1214 (2435)
+++.... +.+...|..++....... ..... ....+...|+|..+++... .+.+.+.|..+......+....
T Consensus 221 ~yV~~~~~~~~~v~~id~~~~~v~~~~~----~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 221 VYVANDGSGSNNVLKIDTATGNVTATDL----PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred EEEEeccCCCceEEEEeCCCceEEEecc----ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccc
Confidence 7665544 588888988765544311 01122 4566788999999998854 4889999998877666654433
Q ss_pred C---CEEEEEEee
Q psy4869 1215 D---SVTGVTFVP 1224 (2435)
Q Consensus 1215 ~---~V~~i~~sp 1224 (2435)
. .+..+.+.+
T Consensus 296 ~~~~~~~~~~~~~ 308 (381)
T COG3391 296 EALGEPVSIAISP 308 (381)
T ss_pred cccccceecccee
Confidence 3 455555554
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.56 Score=65.11 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=125.2
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCC---------eEEEEEEec----------------CCCEEEEEeCCCeEE
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGS---------YALSVCFVP----------------GDRHVLVGTKDGRLL 950 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~---------~v~~vafsp----------------dg~~Lavg~~dg~V~ 950 (2435)
+++..++...+.|.-.|.++++.+..++.+. .|+.+++.. .++.|++++.|++|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 5555555556888888999999988776432 245566643 245788899999999
Q ss_pred EEEccCCceeecccccccce-eEEEE--ecCCCCCCCcCC--cceEEEEEeC----------CCeEEEEEcccccccccc
Q psy4869 951 IVDIGAGEILEDIPAHSQEL-WSVAM--LPDQFNPNVYLP--LQIQVVTGGG----------DKSVKLWQLELVSVNREA 1015 (2435)
Q Consensus 951 vwd~~sg~~v~~~~~h~~~V-~sv~~--s~d~~~~~~~~p--~~~~l~sgs~----------Dg~V~lW~l~~~~~~~~~ 1015 (2435)
..|.++|+++..+.... .| +...+ .+.++......| .+..++.|+. +|.|+.+|.+.++.....
T Consensus 274 ALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999999987764321 11 11000 000000000001 1346666643 688999999988877664
Q ss_pred cccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEEC------------------CCcEEEEEcCCCeEEEE
Q psy4869 1016 DEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL------------------DTTVKIFFLDTFKFFIS 1077 (2435)
Q Consensus 1016 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~------------------dg~V~i~d~~~~~~~~~ 1077 (2435)
+........ ....-+.........-..+++++...+++.+.. .+.|.-.|.++++..-.
T Consensus 353 ~~g~p~~~~---~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 353 DPGNPDPTA---PPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred ecCCCCccc---CCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 422111100 000000000011111234566666666555431 24566677888888877
Q ss_pred EecCCcCEEE---------EEEcC-CCC---EEEEEECCCcEEEEEccCCceeEE
Q psy4869 1078 LYGHKLPVLS---------LDMSY-DST---LIATGSGDRTVKVWGLDYGDCHKS 1119 (2435)
Q Consensus 1078 l~~h~~~V~s---------l~~sp-dg~---~L~Sgs~Dg~I~vWd~~t~~~~~~ 1119 (2435)
++.....+.+ +++.. +|+ .++.++.+|.+.+.|.++|+.+..
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 7642211111 22222 553 788899999999999999886654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.5 Score=61.64 Aligned_cols=198 Identities=13% Similarity=0.169 Sum_probs=99.9
Q ss_pred cEEEEeCCCCceeEEEe-CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc-------cccccceeEEEEecC
Q psy4869 907 QVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI-------PAHSQELWSVAMLPD 978 (2435)
Q Consensus 907 ~V~Iwd~~~~~~~~~l~-~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~-------~~h~~~V~sv~~s~d 978 (2435)
.|.||+.... .+..+. ....+.++.|+.+.+ |++-.+||.+++||+. |+....+ ......+.+..+..+
T Consensus 62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCCCC-EeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence 4888887654 343333 347888999988655 5566799999999987 4431111 111122222233333
Q ss_pred CCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEE
Q psy4869 979 QFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVS 1058 (2435)
Q Consensus 979 ~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg 1058 (2435)
| -.+++ .++.+.+-. ...... .............. .........+ ..++.+....+..
T Consensus 139 G----------ivvLt--~~~~~~~v~--n~~~~~----~~~~~~~~p~~~~~--~~~~~~~~~i--~~l~~~~~~~i~~ 196 (410)
T PF04841_consen 139 G----------IVVLT--GNNRFYVVN--NIDEPV----KLRRLPEIPGLWTK--FHWWPSWTVI--PLLSSDRVVEILL 196 (410)
T ss_pred C----------EEEEC--CCCeEEEEe--Cccccc----hhhccccCCCcccc--cccccccccc--eEeecCcceEEEE
Confidence 3 23333 344444332 111000 00000000000000 0000000111 2344455544444
Q ss_pred ECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEecc-CCCEEEEEEc
Q psy4869 1059 LLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH-EDSVTGVTFV 1133 (2435)
Q Consensus 1059 ~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h-~~~V~~v~fs 1133 (2435)
..++.+.+.+-...+. +. ..+++..+++||+++++|.-..+|.+.+.+.+-.+.+..+... ......+.|.
T Consensus 197 ~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 197 ANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC 268 (410)
T ss_pred ecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence 4455555444332211 22 2468999999999999999999999999987666665555433 2344555555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.24 Score=59.26 Aligned_cols=172 Identities=12% Similarity=0.137 Sum_probs=98.5
Q ss_pred EEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEEccCCceeEEEecc-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy4869 1077 SLYGHKLPVLSLDMSYDST-LIATGSGDRTVKVWGLDYGDCHKSLLAH-EDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1154 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~-~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h-~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~ 1154 (2435)
.+.+-...+..|+|+|+.+ ++++....+.|...+. .|+.++.+.-. .+..-+|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4455556699999999755 6666777888888886 58888877543 3567899998888777777778999999984
Q ss_pred Ccce---eEEEEEEE--eecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC---CceeeE--e------eccCCCEE
Q psy4869 1155 NFER---IVTLHFFI--SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY---GDCHKS--L------LAHEDSVT 1218 (2435)
Q Consensus 1155 ~~~~---~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t---~~~~~~--~------~~h~~~V~ 1218 (2435)
.... ........ ....+...+-.++|++.++.|+++-...-.++|.+.. ...+.. . ..+...+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 4322 11111111 1123567799999999988888887777777777664 111111 1 12344688
Q ss_pred EEEEeeCC-CEEEEEECCCcEEEEECCCCceEE
Q psy4869 1219 GVTFVPKT-HYFFTTSKDGRVKQWDADNFERIV 1250 (2435)
Q Consensus 1219 ~i~~spd~-~~lvsgs~Dg~I~vwD~~~~~~v~ 1250 (2435)
++.++|.. ++++-...+..|..+| ++++.+.
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~ 206 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVS 206 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEE
Confidence 99999955 4455555677777777 4444333
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00028 Score=88.41 Aligned_cols=201 Identities=19% Similarity=0.275 Sum_probs=133.8
Q ss_pred CCeeEEEEccCC--CEEEEEeCCCeEEEEECCCCc--eEEEEeccCccccccCcccCCCeEEEEEeC----CCeEEEEeC
Q psy4869 406 GAVMDLKFSTDG--CHIFTCSTDQTLAVWDLEKGQ--RIKKMKGHSTFVNSCDPVRRGQLLIASGSD----DCTVKVWDP 477 (2435)
Q Consensus 406 ~~V~~l~~s~dg--~~L~s~s~Dg~I~vwd~~tg~--~v~~l~~h~~~v~sv~~~~~~~~llasgs~----Dg~I~vwD~ 477 (2435)
..+.++++..+. ..++.|..+|.|-+-.++... ......+|...+++++|.+-+...+|.|-+ |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 455666666543 357778888998888775432 233456788889999999887777777643 567999999
Q ss_pred CCC--cceEe--e--cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcC-CCCEEEEEE
Q psy4869 478 RKK--NQAVS--M--NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP-DGSYILSNA 550 (2435)
Q Consensus 478 ~~~--~~~~~--~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~sp-dg~~las~s 550 (2435)
.++ .+... + ......++++|..+.+++.+|.....+.++|+|.... ....-.+..+.++..+| .++++++-.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceeccc
Confidence 876 22211 1 2344567899998889999999999999999984311 11122345677788888 778887765
Q ss_pred CCCcEEEEE-cCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC-EEEEecC-CCeEEEEECC
Q psy4869 551 MDNTVRIWD-IRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL-YVTAGSA-DKCVYIWDTT 611 (2435)
Q Consensus 551 ~Dg~I~lWd-l~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~-~Lasgs~-Dg~V~iwd~~ 611 (2435)
||.|-+|| .+.. ..++..+....+...+.+..++|.|-.. .|++... .++|+.+|+.
T Consensus 216 -dg~iAiwD~~rni---enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNI---ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -cCceeeccchhhh---ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999999 4431 2233322222222234678899998542 3444444 5789999975
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.039 Score=75.00 Aligned_cols=142 Identities=21% Similarity=0.330 Sum_probs=99.6
Q ss_pred CCEEEEE-eCCCeEEEEECCCCceEEEEeccCcc-ccccCcccC----CCeEEEEEeCCCeEEEEeCCCCc-ceE-----
Q psy4869 417 GCHIFTC-STDQTLAVWDLEKGQRIKKMKGHSTF-VNSCDPVRR----GQLLIASGSDDCTVKVWDPRKKN-QAV----- 484 (2435)
Q Consensus 417 g~~L~s~-s~Dg~I~vwd~~tg~~v~~l~~h~~~-v~sv~~~~~----~~~llasgs~Dg~I~vwD~~~~~-~~~----- 484 (2435)
...|+.- .....|+-.|++.|+.+..++.|... |..+.-... .+.-...|-.+..+..||+|-.. .+.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3344433 34578999999999999999988754 544432211 12234457778899999998543 222
Q ss_pred eecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q psy4869 485 SMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560 (2435)
Q Consensus 485 ~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl 560 (2435)
.+......+|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|.+|+.+.||++|++.+ +..+.|++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 22355567888887776 699999999999999543333344567789999999999999988654 556777765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.52 Score=60.80 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=64.2
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1354 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1354 ~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
.....|.+.+++|+...++.|+.||.|.+||...+--. .....-.++.++|||+|..|+.|+.-|.|.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 56678999999999999999999999999999877332 224446789999999999999999999999999873
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.25 Score=62.58 Aligned_cols=211 Identities=16% Similarity=0.223 Sum_probs=126.2
Q ss_pred CcEEEEeCCCCceeEEEe--CCCeEEEEEEec-------CCCEEEEEeC---------C-CeEEEEEccCC-----ce--
Q psy4869 906 SQVKIWNRPSLSCLRTID--TGSYALSVCFVP-------GDRHVLVGTK---------D-GRLLIVDIGAG-----EI-- 959 (2435)
Q Consensus 906 ~~V~Iwd~~~~~~~~~l~--~~~~v~~vafsp-------dg~~Lavg~~---------d-g~V~vwd~~sg-----~~-- 959 (2435)
..|+|.|..+.+.+..++ ....+.+++... ...+|++|+. . |+|.++++... ++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 358899999988885554 666777666655 2568888763 2 99999999884 22
Q ss_pred eecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeecccccc
Q psy4869 960 LEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1039 (2435)
Q Consensus 960 v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1039 (2435)
+.. ....++|++++-..+ .|+.+. .+.|.+|++.... .... ......
T Consensus 82 i~~-~~~~g~V~ai~~~~~------------~lv~~~-g~~l~v~~l~~~~----------------~l~~---~~~~~~ 128 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSFNG------------RLVVAV-GNKLYVYDLDNSK----------------TLLK---KAFYDS 128 (321)
T ss_dssp EEE-EEESS-EEEEEEETT------------EEEEEE-TTEEEEEEEETTS----------------SEEE---EEEE-B
T ss_pred EEE-EeecCcceEhhhhCC------------EEEEee-cCEEEEEEccCcc----------------cchh---hheecc
Confidence 222 234678999988743 455544 4899999986322 0011 111122
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC-CeEEEEE-e-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC---
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT-FKFFISL-Y-GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY--- 1113 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~-~~~~~~l-~-~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t--- 1113 (2435)
.-.+.++... +.+|++|+.-..+.++..+. .+.+..+ . .....++++.|-++++.++.++.+|.|.++..+.
T Consensus 129 ~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~ 206 (321)
T PF03178_consen 129 PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIP 206 (321)
T ss_dssp SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-S
T ss_pred eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCc
Confidence 2345555544 66999999888899886543 2322222 2 2345588999986667999999999999998762
Q ss_pred ----Cc-eeE-EEec-cCCCEEEE---EEcc--CC------CEEEEEeCCCcEEEE
Q psy4869 1114 ----GD-CHK-SLLA-HEDSVTGV---TFVP--KT------HYFFTTSKDGRVKQW 1151 (2435)
Q Consensus 1114 ----~~-~~~-~l~~-h~~~V~~v---~fsp--~~------~~l~s~s~Dg~V~iw 1151 (2435)
+. .+. ...- ..+.|+++ .+.| .+ ..++.++.+|.|...
T Consensus 207 ~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 207 NSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp STTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 22 222 2222 34556666 4444 12 247777788887743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.2 Score=59.87 Aligned_cols=205 Identities=12% Similarity=0.164 Sum_probs=118.6
Q ss_pred EEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec--CcccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 442 KMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN--NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 442 ~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~--~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
.+.+-...+..+.|.|++..+++.....+.|..++.. ++.+..+. .....-.|++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3445555688999999988999999999999999974 66666553 34568889998888777776678999999984
Q ss_pred CCc------EEEEEe-----cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCce-EEEEeCcc--cccccCeE
Q psy4869 520 TNS------VVQKLR-----GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERC-VKVMSGHQ--HNFEKNLL 585 (2435)
Q Consensus 520 s~~------~v~~l~-----~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~-v~~~~~h~--~~~~~~i~ 585 (2435)
... .+..+. .++..+-+|+|+|.++.|+.+-...-.+||.+......... +.....+. ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 122221 35567999999999888888888777888877642111111 11111111 11223467
Q ss_pred EEEEcCCC-CEEEEecCCCeEEEEECCCCcEEEEecCCC---------CCeeEEEEcCCCCEEEEEECCCcEEE
Q psy4869 586 RCAWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHN---------GSVNDVQFHPKEPIIMSASSDKTIYL 649 (2435)
Q Consensus 586 ~v~~spdg-~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~---------~~V~~l~fspd~~~Lasgs~Dg~I~v 649 (2435)
.+.++|.. ++++-......|.++| ..|+++..+.-.. .....|+|.++|++.++ ++-...++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 88888864 5555566678888999 6777765543211 34678999998854444 44444443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.54 Score=58.10 Aligned_cols=242 Identities=15% Similarity=0.154 Sum_probs=131.3
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccc
Q psy4869 934 VPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNR 1013 (2435)
Q Consensus 934 spdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~ 1013 (2435)
...++.|++|+++| |++++++.......+ .+...|..+...++- +.|+.- .|+.+++++++......
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~----------~~llvL-sd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPEL----------NLLLVL-SDGQLYVYDLDSLEPVS 70 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEeccc----------CEEEEE-cCCccEEEEchhhcccc
Confidence 34688999999998 899998333222222 122248888888864 344443 45999999987543221
Q ss_pred cccccccccccccceeeeeeccccccCCCEEEEE---EcCCCCEEEEEECCCcEEEEEcCCC-----eEEEEEecCCcCE
Q psy4869 1014 EADEETKDVSRSHKVLSLLHTRTLKLEEQVLCAR---VSPDSKLLAVSLLDTTVKIFFLDTF-----KFFISLYGHKLPV 1085 (2435)
Q Consensus 1014 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~---~spdg~~Lavg~~dg~V~i~d~~~~-----~~~~~l~~h~~~V 1085 (2435)
...... ...... ....+....++..++ -...+..|+++. ...|.+|..... +..+.+. ....+
T Consensus 71 ~~~~~~---~~~~~~----~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~ 141 (275)
T PF00780_consen 71 TSAPLA---FPKSRS----LPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPP 141 (275)
T ss_pred cccccc---cccccc----ccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCc
Confidence 100000 000000 000122233444444 222345666665 558999887542 4445555 44778
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEecc------------CCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q psy4869 1086 LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH------------EDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1153 (2435)
Q Consensus 1086 ~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h------------~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~ 1153 (2435)
.+++|. ++.++.|..++ ..+.|+.++.....+... ..++..+... ++.+|++ .|..-.+.|.
T Consensus 142 ~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~--~~~~g~fv~~ 215 (275)
T PF00780_consen 142 SSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC--YDNIGVFVNK 215 (275)
T ss_pred EEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE--ecceEEEEcC
Confidence 899997 56777776554 788899877654433211 1233333333 3455543 3333344443
Q ss_pred CCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeec
Q psy4869 1154 DNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1212 (2435)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~ 1212 (2435)
.++...... + .-......+++. ..+|++-+. +.|.||++.+++.++.+..
T Consensus 216 -~G~~~r~~~----i-~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 216 -NGEPSRKST----I-QWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred -CCCcCcccE----E-EcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 333222110 0 112345556654 446666555 5599999999998887753
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.50 E-value=2.1 Score=55.99 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=90.6
Q ss_pred eEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe--ccCcccccc-----Cccc
Q psy4869 385 QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK--GHSTFVNSC-----DPVR 457 (2435)
Q Consensus 385 ~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~--~h~~~v~sv-----~~~~ 457 (2435)
.|+||+..+.......+.. +.|.++.|+.+ ..|++...||.++++|+. |+....+. .....|..+ .+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~--~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS--GRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECC--CCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC
Confidence 5999998775443333333 89999999874 577788899999999985 44311111 011112222 2222
Q ss_pred CCCeEEEEEeCCCeEEEEe-CCCCcceEee-cCc---------ccEEE-EEECCCCCEEEEEecCCeEEEEECCCCcEEE
Q psy4869 458 RGQLLIASGSDDCTVKVWD-PRKKNQAVSM-NNT---------YQVTS-VAFNDTAECVLTGGIDNDIKMWDLRTNSVVQ 525 (2435)
Q Consensus 458 ~~~~llasgs~Dg~I~vwD-~~~~~~~~~~-~~~---------~~v~s-v~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~ 525 (2435)
.| ..+++ .++.+.+.. .......... ... ..... ..++.+....+....++.+++.+-...+.
T Consensus 138 ~G-ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 138 NG-IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred CC-EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence 22 33333 334443332 2211111111 000 00000 23444555555555556666444332211
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 526 KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 526 ~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
+. ..+++..|++||+|++||.-..+|.+.+.+.+
T Consensus 213 -i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 213 -ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred -cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 22 24689999999999999999999999988754
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.46 E-value=3.3 Score=57.76 Aligned_cols=202 Identities=11% Similarity=-0.021 Sum_probs=122.3
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCCcC--------EEEEEEc----------------CCCCEEEEEECCCcEE
Q psy4869 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP--------VLSLDMS----------------YDSTLIATGSGDRTVK 1107 (2435)
Q Consensus 1052 g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~--------V~sl~~s----------------pdg~~L~Sgs~Dg~I~ 1107 (2435)
+..|++++.++.|.-+|..+++.+-.+...... ...+.+- .++..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777777888888888888887776532110 1122221 1345788899999999
Q ss_pred EEEccCCceeEEEeccCCCE-------------EEEEEcc--CCCEEEEEeC----------CCcEEEEeCCCcceeEEE
Q psy4869 1108 VWGLDYGDCHKSLLAHEDSV-------------TGVTFVP--KTHYFFTTSK----------DGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1108 vWd~~t~~~~~~l~~h~~~V-------------~~v~fsp--~~~~l~s~s~----------Dg~V~iwD~~~~~~~~~~ 1162 (2435)
-.|.++|+.+..+... ..| ..+.-.| .+..+++++. +|.|+-+|.++++.+..+
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999988766321 111 0111122 2345666643 688999999999998887
Q ss_pred EEEEeec----------cc-ccCe-EEEEEeCCCCEEEEEe------------------CCCcEEEEEccCCceeeEeec
Q psy4869 1163 HFFISLY----------GH-KLPV-LSLDMSYDSTLIATGS------------------GDRTVKVWGLDYGDCHKSLLA 1212 (2435)
Q Consensus 1163 ~~~~~~~----------~h-~~~V-~~l~~s~dg~~l~sgs------------------~Dg~V~iwd~~t~~~~~~~~~ 1212 (2435)
....... .+ ...+ ..+++.++...++.+. ..+.|.-.|.++|+....++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 6311000 00 0111 2334444444444322 235677789999998877764
Q ss_pred cCCCEEE---------EEEee-CCC---EEEEEECCCcEEEEECCCCceEEEEee
Q psy4869 1213 HEDSVTG---------VTFVP-KTH---YFFTTSKDGRVKQWDADNFERIVTLHF 1254 (2435)
Q Consensus 1213 h~~~V~~---------i~~sp-d~~---~lvsgs~Dg~I~vwD~~~~~~v~~~~~ 1254 (2435)
....+.+ +.+.. +++ .++.+..+|.+.+.|.++++.+.....
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 2211111 11222 443 788899999999999999998876544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4701|consensus | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0039 Score=73.44 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=3.8
Q ss_pred ccccccc
Q psy4869 1807 ENEKLFK 1813 (2435)
Q Consensus 1807 ~~~~~~~ 1813 (2435)
.|-|||-
T Consensus 246 Kn~~lFL 252 (568)
T KOG4701|consen 246 KNTSLFL 252 (568)
T ss_pred ccceEEe
Confidence 4556663
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.1 Score=56.42 Aligned_cols=240 Identities=13% Similarity=0.097 Sum_probs=103.8
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEee-ccc----ccCeEEEEEeCCCCEEEEEe------CCCcEEEEEcc
Q psy4869 1135 KTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISL-YGH----KLPVLSLDMSYDSTLIATGS------GDRTVKVWGLD 1202 (2435)
Q Consensus 1135 ~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~-~~h----~~~V~~l~~s~dg~~l~sgs------~Dg~V~iwd~~ 1202 (2435)
+.++|+..+ .++.|+++|+.+......+...... +-+ -..-..+-.-|+|+.++++- ..|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666665 7789999999854444443322221 111 12233344457888887742 23568889988
Q ss_pred CCceeeEeecc---CCCEEEEEEeeCCCEEEEEEC--------------------CCcEEEEECCCCceEEEEeeCCccc
Q psy4869 1203 YGDCHKSLLAH---EDSVTGVTFVPKTHYFFTTSK--------------------DGRVKQWDADNFERIVTLHFNPNVY 1259 (2435)
Q Consensus 1203 t~~~~~~~~~h---~~~V~~i~~spd~~~lvsgs~--------------------Dg~I~vwD~~~~~~v~~~~~~~~~~ 1259 (2435)
+.+........ ...-..+.|.|..+.+++..+ ..++.+||+...+.+.++.+.....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 88777666542 335677888888888888753 3479999999999999988765332
Q ss_pred c---------cCceE-EEEEECCCeEEEEEcccccccccccccccccccccce--eeeeecccccccccEEEEEecCCcc
Q psy4869 1260 L---------PLQIQ-VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKV--LSLLHTRTLKLEEQVLCARVSPDSK 1327 (2435)
Q Consensus 1260 ~---------~~~~~-lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~ia~spdg~ 1327 (2435)
. |.... ++.+.-...|..|-..... ....+..........+. +..+.........-|..|.+|.|++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g-~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG-EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT-EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCC-CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 2 33332 3333344444444221000 00000000000000000 0000000111245689999999999
Q ss_pred eeEEee-cCCeEEEEEccc-c--eEEEEec-C---------------CCCCeEEEEEecCCCEEEEEe
Q psy4869 1328 LLAVSL-LDTTVKIFFLDT-F--KFFISLY-G---------------HKLPVLSLDMSYDSTLIATGS 1375 (2435)
Q Consensus 1328 ~lavgs-~dG~V~v~d~~~-~--k~i~~~~-~---------------h~~~V~~la~spdg~~L~sGg 1375 (2435)
+|.+.. ..|.|+.||+.. . +++..+. + -.+...-|..|.||+.|+...
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 988765 799999999965 2 3333222 1 113346677888998887653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0072 Score=48.34 Aligned_cols=39 Identities=36% Similarity=0.738 Sum_probs=35.3
Q ss_pred CCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEE
Q psy4869 107 TDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 107 ~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd 145 (2435)
++++..+.+|...|.++.|++.+.++++|+.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 346677888999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.054 Score=73.70 Aligned_cols=139 Identities=19% Similarity=0.260 Sum_probs=95.9
Q ss_pred ecCCeEEEEECCCCcEEEEEecCCCC-EEEEEEcC-----CCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccc
Q psy4869 508 GIDNDIKMWDLRTNSVVQKLRGHSDT-VTGLSLSP-----DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE 581 (2435)
Q Consensus 508 s~dg~V~lwD~~s~~~v~~l~~h~~~-V~~i~~sp-----dg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~ 581 (2435)
.....|+-.|+..|+.+..+..|... |..++-.. +......|-.+..+..||.|... .+++. -..+.....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~-~~~k~Y~~~ 577 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVD-SQSKQYSSK 577 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cceee-ccccccccC
Confidence 34678999999999999999988764 55443321 23456677789999999999532 23332 223332233
Q ss_pred cCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 582 KNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 582 ~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
....+++-+.+| +||.|+.+|.||+||....+-...+++-..+|..|..+.||++|++.+. ..|.+++
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 345555555554 7999999999999995444445567788899999999999998876653 3444444
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.16 Score=68.59 Aligned_cols=215 Identities=15% Similarity=0.133 Sum_probs=114.3
Q ss_pred CCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEe-----CCC--eEEEEeCCCCcceEeecCcccEEEEEEC
Q psy4869 426 DQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGS-----DDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFN 498 (2435)
Q Consensus 426 Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs-----~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~s 498 (2435)
+|.+.-.+-..-.++.-..+....+.+.++++++..+++... .|. .|.+++.... . ..+........-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~lt~g~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQVLEGHSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eeeecCCCCCCceEC
Confidence 555544432222222222233345678888999988776662 233 4555554222 2 223223347788999
Q ss_pred CCCCEEEEEecC------------CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 499 DTAECVLTGGID------------NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 499 p~g~~l~sgs~d------------g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
|+|+.|++.... +.+++.+++.++... ...+.|..+.|+|||.+|+... +++|.+=-+......
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G 481 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDG 481 (591)
T ss_pred CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCC
Confidence 998877776432 334444444443322 2356799999999999988765 577776443321111
Q ss_pred CceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC-CCcEEEEecC--CCCCeeEEEEcCCCCEEEEEEC
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT-TRRIAYKLPG--HNGSVNDVQFHPKEPIIMSASS 643 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~-s~~~~~~l~~--h~~~V~~l~fspd~~~Lasgs~ 643 (2435)
...+.....-.......+..+.|..++.++ .+..++...+|.+. .|.....+.+ ...++..|+=.+. .|+....
T Consensus 482 ~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~ 558 (591)
T PRK13616 482 QYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDA 558 (591)
T ss_pred ceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcC
Confidence 111111000011122235778999999855 55545544455433 1222222233 2456777776653 4556666
Q ss_pred CCcEEE
Q psy4869 644 DKTIYL 649 (2435)
Q Consensus 644 Dg~I~v 649 (2435)
+|.+.+
T Consensus 559 ~g~~~l 564 (591)
T PRK13616 559 RAVLQL 564 (591)
T ss_pred CceEEe
Confidence 665443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.21 E-value=2 Score=56.56 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=70.9
Q ss_pred EEEEEcCCCCEEEEE-ECCC----cEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCC-----------cEE
Q psy4869 1086 LSLDMSYDSTLIATG-SGDR----TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG-----------RVK 1149 (2435)
Q Consensus 1086 ~sl~~spdg~~L~Sg-s~Dg----~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg-----------~V~ 1149 (2435)
..+.++|+|++|+.+ +..| .|+++|+++|+.+........ ...+.|.++++.|+....+. .|+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 356789999988754 3444 499999999976653321111 22399999988776665433 378
Q ss_pred EEeCCCcceeEEEEEEEeecccc-cC-eEEEEEeCCCCEEEEEeC---C-CcEEEEEccCC
Q psy4869 1150 QWDADNFERIVTLHFFISLYGHK-LP-VLSLDMSYDSTLIATGSG---D-RTVKVWGLDYG 1204 (2435)
Q Consensus 1150 iwD~~~~~~~~~~~~~~~~~~h~-~~-V~~l~~s~dg~~l~sgs~---D-g~V~iwd~~t~ 1204 (2435)
.|++.+......+ .+.... .. ...+..++++++|+.... + ..+.+.|+..+
T Consensus 206 ~~~~gt~~~~d~l----vfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 206 RHKLGTPQSEDEL----VFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEETTS-GGG-EE----EEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEECCCChHhCee----EEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 8888766443211 011222 22 678889999999876542 2 45788888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.059 Score=67.29 Aligned_cols=142 Identities=21% Similarity=0.322 Sum_probs=100.1
Q ss_pred EEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCC--E-----EEEEECCCcEEEEEcCCCCCCCceEEEEeCcc
Q psy4869 505 LTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGS--Y-----ILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQ 577 (2435)
Q Consensus 505 ~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~--~-----las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~ 577 (2435)
..+.....|+-.|++.|+.+..++-|.+ |+-+.+.|+.+ . -+.|-.|..|.-||.|.. ....+....+|+
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~--~~~kl~~~q~kq 426 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ--GKNKLAVVQSKQ 426 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEeccccc--Ccceeeeeeccc
Confidence 3455567789999999999999998877 88888888753 2 334667899999999842 222344444554
Q ss_pred cccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 578 HNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 578 ~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
........+.+-. ..-+|++||.+|.||+||.-..+-...+++...+|..|..+.+|++|+..+ +..+.+-+
T Consensus 427 y~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 427 YSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred cccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 4333333444444 345899999999999999844455566888999999999999999876554 34444433
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.32 Score=61.59 Aligned_cols=170 Identities=15% Similarity=0.186 Sum_probs=102.1
Q ss_pred CeEEEEeCCCC-------cceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EEEEEec-CCCCEEEEEEc
Q psy4869 470 CTVKVWDPRKK-------NQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNS-VVQKLRG-HSDTVTGLSLS 540 (2435)
Q Consensus 470 g~I~vwD~~~~-------~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~-~v~~l~~-h~~~V~~i~~s 540 (2435)
|.|.++++... +.+.....+++|++++-- ++ +|+++ .++.|++|++...+ .+..-.- ..-.+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 88999999874 122333567888888766 33 44443 35899999998887 4433221 22356666554
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC-------C
Q psy4869 541 PDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT-------R 613 (2435)
Q Consensus 541 pdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s-------~ 613 (2435)
+++|+.|...+.+.++..+. ..+.+..+... .....+.++.+-++++.++.+..+|.+.++.... +
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~---~~~~l~~va~d--~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~ 211 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDE---ENNKLILVARD--YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDG 211 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEET---TTE-EEEEEEE--SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTT
T ss_pred --ccEEEEEEcccCEEEEEEEc---cCCEEEEEEec--CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccc
Confidence 66999999989898886553 12222222211 1124678888887778999999999999997652 2
Q ss_pred --cEEEEecC-CCCCeeEE---EEcCC--C------CEEEEEECCCcEEE
Q psy4869 614 --RIAYKLPG-HNGSVNDV---QFHPK--E------PIIMSASSDKTIYL 649 (2435)
Q Consensus 614 --~~~~~l~~-h~~~V~~l---~fspd--~------~~Lasgs~Dg~I~v 649 (2435)
++...-.- ....|+++ ++.|. + +.++-++.+|.|..
T Consensus 212 ~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 212 DPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred cccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 22222222 34557777 54452 2 24788888888773
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.51 Score=53.59 Aligned_cols=219 Identities=13% Similarity=0.111 Sum_probs=118.6
Q ss_pred EEEEEeCCCeEEEEECCCCceEE-EEeccCccccccCc-ccCCCe-EEEEEeCCCeEEEEeCCCC--cceEee------c
Q psy4869 419 HIFTCSTDQTLAVWDLEKGQRIK-KMKGHSTFVNSCDP-VRRGQL-LIASGSDDCTVKVWDPRKK--NQAVSM------N 487 (2435)
Q Consensus 419 ~L~s~s~Dg~I~vwd~~tg~~v~-~l~~h~~~v~sv~~-~~~~~~-llasgs~Dg~I~vwD~~~~--~~~~~~------~ 487 (2435)
+++.--..+.|.-||+++.+..+ ++.+.. ..++.+ ...++. ..+.++.--.|.-||.... .....+ .
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 44444445667668887755332 233321 122221 122333 3333444344555774322 111221 1
Q ss_pred CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCC--------CCEEEEEEcCCCCEEE-EEECCCcEEEE
Q psy4869 488 NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS--------DTVTGLSLSPDGSYIL-SNAMDNTVRIW 558 (2435)
Q Consensus 488 ~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~--------~~V~~i~~spdg~~la-s~s~Dg~I~lW 558 (2435)
.+.+.+.-..+|+|++++---.|-. ..+....+.+..-+.+|. +--++++|+.|.+.+. +-+.+..|.-|
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred HhcccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 2456777788999999442222211 122333333333334443 2336789998877665 56678888888
Q ss_pred EcC--CCCC-CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCC-
Q psy4869 559 DIR--PYVP-GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPK- 634 (2435)
Q Consensus 559 dl~--~~~~-~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd- 634 (2435)
|.. .... ..+.+..++..+....-..-.++...+|++.++.=..++|...|..+|+.+.+++-....|+++||--.
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence 843 2211 112232222211100011123455667888888888899999999999999999888999999999643
Q ss_pred CCEEEE
Q psy4869 635 EPIIMS 640 (2435)
Q Consensus 635 ~~~Las 640 (2435)
-..|++
T Consensus 266 ~d~~yv 271 (310)
T KOG4499|consen 266 LDILYV 271 (310)
T ss_pred ccEEEE
Confidence 344443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.53 Score=54.99 Aligned_cols=192 Identities=15% Similarity=0.154 Sum_probs=112.7
Q ss_pred EEcCCCCEEEEEECC-----CcEEEEEcC-CCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC------------------
Q psy4869 1047 RVSPDSKLLAVSLLD-----TTVKIFFLD-TFKFFISLYGHKLPVLSLDMSYDSTLIATGSG------------------ 1102 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~d-----g~V~i~d~~-~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~------------------ 1102 (2435)
.|||||.+|++.-.| |.|-|||.. ..+.+..+..|.-.-..+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 688999988877433 789999986 45667778888888889999999998886543
Q ss_pred CCcEEEEEccCCceeEE--Ee--ccCCCEEEEEEccCCCEEEEEeCCCcE-----EEEeCCCcceeEEEEEEEe-ecccc
Q psy4869 1103 DRTVKVWGLDYGDCHKS--LL--AHEDSVTGVTFVPKTHYFFTTSKDGRV-----KQWDADNFERIVTLHFFIS-LYGHK 1172 (2435)
Q Consensus 1103 Dg~I~vWd~~t~~~~~~--l~--~h~~~V~~v~fsp~~~~l~s~s~Dg~V-----~iwD~~~~~~~~~~~~~~~-~~~h~ 1172 (2435)
.-.+.+.|..+|..+.. +. .+.-.|..++..+++..++.+-+.|.- .+=....++.+..+..... .-...
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 11234445445544332 22 345578888888888766655443321 0111111111111110000 00122
Q ss_pred cCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEE
Q psy4869 1173 LPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1242 (2435)
Q Consensus 1173 ~~V~~l~~s~dg~~l~sgs~-Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD 1242 (2435)
..|-+++.+.+..+++..+- .+...+||..+|..+..-.- ..+..+. +...-+++.+.+|.+.++.
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccce--eccCceEEecCCceEEecc
Confidence 34667788765566665554 45677999999987644321 1112222 2344477778888888773
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.026 Score=71.95 Aligned_cols=94 Identities=20% Similarity=0.197 Sum_probs=79.1
Q ss_pred cCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEE-EEEEcCCCCEEEEEECCCcEEEEEccCCcee
Q psy4869 1039 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVL-SLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1117 (2435)
Q Consensus 1039 ~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~-sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~ 1117 (2435)
..-.+.-+.|+|.-.++|.+..+|.|.++.+. ++.+.++.-|...++ +++|.|||++|+.|-.||+|++.|++++..+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34567889999999999999999999999998 888899987888887 9999999999999999999999999988766
Q ss_pred EEEe-ccCCCEEEEEEc
Q psy4869 1118 KSLL-AHEDSVTGVTFV 1133 (2435)
Q Consensus 1118 ~~l~-~h~~~V~~v~fs 1133 (2435)
.... .-...|..+-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 5532 234456666665
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.88 Score=56.48 Aligned_cols=191 Identities=15% Similarity=0.073 Sum_probs=115.5
Q ss_pred cCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEe----c-CCcCEEEEEEcCCCCEEEEEEC---------CC
Q psy4869 1039 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY----G-HKLPVLSLDMSYDSTLIATGSG---------DR 1104 (2435)
Q Consensus 1039 ~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~----~-h~~~V~sl~~spdg~~L~Sgs~---------Dg 1104 (2435)
....+.++..-..+..|++.. ..+.+++.+.+..+..+. + -....+.+...|+|.+.+.... ..
T Consensus 64 ~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~ 141 (307)
T COG3386 64 SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERP 141 (307)
T ss_pred CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCC
Confidence 344445555444455555442 336666666554433221 1 2245677888899886665333 00
Q ss_pred cEEEEEcc-CCceeEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCC--cceeEEEEEEEeecccccCeEEEEE
Q psy4869 1105 TVKVWGLD-YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK-DGRVKQWDADN--FERIVTLHFFISLYGHKLPVLSLDM 1180 (2435)
Q Consensus 1105 ~I~vWd~~-t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~-Dg~V~iwD~~~--~~~~~~~~~~~~~~~h~~~V~~l~~ 1180 (2435)
.=.+|-+. .+..++.+..+-..-+.++|+||++.|+.+.. .+.|+.|++.. +..... ..........+..-.++.
T Consensus 142 ~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~v 220 (307)
T COG3386 142 TGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAV 220 (307)
T ss_pred cceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEEEccCCCCCCCceEE
Confidence 11355554 56666666666666789999999988887765 47888887763 111111 111111223455666778
Q ss_pred eCCCCEEEEEeCCC-cEEEEEccCCceeeEeeccCCCEEEEEEee-CCCEEEEEE
Q psy4869 1181 SYDSTLIATGSGDR-TVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTS 1233 (2435)
Q Consensus 1181 s~dg~~l~sgs~Dg-~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp-d~~~lvsgs 1233 (2435)
..+|.+-+++..+| .|.+|+.+ |+++..+.-....+++++|-- +.+.|++.+
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 88888776555554 89999999 998888877767888888864 334444443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.93 E-value=2 Score=56.61 Aligned_cols=243 Identities=14% Similarity=0.095 Sum_probs=129.9
Q ss_pred EEEEEECCCCCEEEEE-eCCC----eEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC-----------e
Q psy4869 365 IFCSKYHPDGQYIASS-GYDR----QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ-----------T 428 (2435)
Q Consensus 365 V~~l~fspdg~~Lasg-s~Dg----~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg-----------~ 428 (2435)
+....++|+|++||-+ +..| .|+++|+.++......+... ....+.|.+|++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3467899999998865 3333 59999998764333232221 112399999988877665432 3
Q ss_pred EEEEECCCCce--EEEEeccCcc--ccccCcccCCCeEEEEEeCCC---eEEEEeCCCC-----cceEeecCcccEEEEE
Q psy4869 429 LAVWDLEKGQR--IKKMKGHSTF--VNSCDPVRRGQLLIASGSDDC---TVKVWDPRKK-----NQAVSMNNTYQVTSVA 496 (2435)
Q Consensus 429 I~vwd~~tg~~--v~~l~~h~~~--v~sv~~~~~~~~llasgs~Dg---~I~vwD~~~~-----~~~~~~~~~~~v~sv~ 496 (2435)
|+.|++.++.. ...+.+.... ...+..++++..+++...... .+.+.|+..+ ...........+....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 78888877643 2334333322 346677888888777655544 4788888764 2222223333333322
Q ss_pred ECCCCCEEEEEe---cCCeEEEEECCCCcE---EEEEecCCCCEEEEEEcCCCCEEEEEE-CCC--cEEEEEcCCCCCCC
Q psy4869 497 FNDTAECVLTGG---IDNDIKMWDLRTNSV---VQKLRGHSDTVTGLSLSPDGSYILSNA-MDN--TVRIWDIRPYVPGE 567 (2435)
Q Consensus 497 ~sp~g~~l~sgs---~dg~V~lwD~~s~~~---v~~l~~h~~~V~~i~~spdg~~las~s-~Dg--~I~lWdl~~~~~~~ 567 (2435)
-+..+.+++... ..+.|...++..... ...+-.|...+.-..+...+.+|+... .++ .|+++|+. ..
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~----~~ 359 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD----DG 359 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-----T
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC----CC
Confidence 222444444432 246788888887652 335566666444444444555665443 343 57778876 12
Q ss_pred ceEEEEeCcccccccCeEEEEEcCCCCEEE--EecC--CCeEEEEECCCCcEE
Q psy4869 568 RCVKVMSGHQHNFEKNLLRCAWSVSGLYVT--AGSA--DKCVYIWDTTTRRIA 616 (2435)
Q Consensus 568 ~~v~~~~~h~~~~~~~i~~v~~spdg~~La--sgs~--Dg~V~iwd~~s~~~~ 616 (2435)
.......... .+.+..+...++++.+. ..|. -++++.||+.+++..
T Consensus 360 ~~~~~~~~p~---~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 KESREIPLPE---AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEESSS---SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred cEEeeecCCc---ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 3333332221 12334444444444332 2222 357888888888653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.91 E-value=3.3 Score=53.33 Aligned_cols=81 Identities=14% Similarity=0.066 Sum_probs=60.1
Q ss_pred cccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEe--cC----------------CC-EEEEE
Q psy4869 1314 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS--YD----------------ST-LIATG 1374 (2435)
Q Consensus 1314 ~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~s--pd----------------g~-~L~sG 1374 (2435)
+-.+.+++.+|++++.|+...=|+|.|+|+..+..++.++|++.+-..--.. .. .. +++-+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3468889999999999998888999999999999888888887552221111 11 11 45557
Q ss_pred eCCCcEEEEeCCCCceEEEe
Q psy4869 1375 SGDRTVKVWGLDYGDCHKSL 1394 (2435)
Q Consensus 1375 g~Dg~V~iwdl~~gk~~~~~ 1394 (2435)
-.-|.|-||+++.|..++.+
T Consensus 387 prRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred ccCCeEEEEecCCCCEEEEE
Confidence 77899999999988876543
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.4 Score=56.49 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=65.5
Q ss_pred EEEEcCCCCEEEEEeCCCCEEE---EEccC-----CeeEEEEe---cCC--CcEEEEEEeec---------CCCcEEEEE
Q psy4869 122 VIQYDPLGHRLATGSKDTDIVL---WDVVA-----ECGLHRLS---GHK--GVITDIRFMSQ---------PGHHFVVSS 179 (2435)
Q Consensus 122 ~l~f~p~g~~laSgs~Dg~I~i---Wd~~~-----~~~~~~l~---gH~--~~V~~v~~~~~---------~~~~~l~S~ 179 (2435)
.++.+|+|++||-|..+..+.+ |+... ......+. .+. ..|+++.|.|- .+...++-|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999988888776 64421 11112221 122 57999888764 455788899
Q ss_pred eCCCcEEEEeccCCccccccccccceEEEEEEEe
Q psy4869 180 AKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMR 213 (2435)
Q Consensus 180 s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p 213 (2435)
-.+|.|++|.. +|..+..-.-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999986 7877776677889998888753
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.15 Score=63.79 Aligned_cols=143 Identities=20% Similarity=0.321 Sum_probs=101.5
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCe------EEEEEeCCCeEEEEeCCCCcc--e---
Q psy4869 416 DGCHIF-TCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQL------LIASGSDDCTVKVWDPRKKNQ--A--- 483 (2435)
Q Consensus 416 dg~~L~-s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~------llasgs~Dg~I~vwD~~~~~~--~--- 483 (2435)
+.+.|+ .+.....|+-.|++.|+.+.+.+-|.. |+-+.+.|+... --+.|-.|..|.-||+|-... +
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 455567789999999999999998877 555666555321 123466788899999984322 1
Q ss_pred --EeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 484 --VSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 484 --~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
..+..+...+|.+-..+| +||+|+.+|.|++||--..+....+.+-..+|..|..+.||++|+.. .+.++.|-++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 122345556777766665 79999999999999984444455667888999999999999998864 45667776764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.023 Score=45.30 Aligned_cols=39 Identities=38% Similarity=0.539 Sum_probs=34.8
Q ss_pred CcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 613 RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 613 ~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355677778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.62 E-value=5.4 Score=51.55 Aligned_cols=286 Identities=14% Similarity=0.126 Sum_probs=154.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeC-----CCCEEEEEeCCCcEEEEEccC--Cc---
Q psy4869 1136 THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY-----DSTLIATGSGDRTVKVWGLDY--GD--- 1205 (2435)
Q Consensus 1136 ~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-----dg~~l~sgs~Dg~V~iwd~~t--~~--- 1205 (2435)
...|++|+.+|.+++|+......... ... -...-..+|..+..-+ +...||+ =.-..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~-~ll-lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE-DLL-LETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc-cEE-EEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 45899999999999999854332111 111 1123457888887653 2234444 4567788887732 11
Q ss_pred ----eeeEeeccCC--CEEEEEEee-----CCCEEEEEECCCcEEEEECCCCceEEEE----eeCCcccccCceEEEEEE
Q psy4869 1206 ----CHKSLLAHED--SVTGVTFVP-----KTHYFFTTSKDGRVKQWDADNFERIVTL----HFNPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1206 ----~~~~~~~h~~--~V~~i~~sp-----d~~~lvsgs~Dg~I~vwD~~~~~~v~~~----~~~~~~~~~~~~~lv~g~ 1270 (2435)
.+..+..|.- ....+++-| ...+|++=+.||.+.+|+-+...-...+ -..+..|.+..+.+++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence 2333444543 333444444 2467889999999999987764322222 123345667778899999
Q ss_pred CCCeEEEEEcccccccccccccccc-cccccceeeeeecccccccccEEEEEecC---C-cceeEEeecCCeEEEEEccc
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKD-VSRSHKVLSLLHTRTLKLEEQVLCARVSP---D-SKLLAVSLLDTTVKIFFLDT 1345 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~ia~sp---d-g~~lavgs~dG~V~v~d~~~ 1345 (2435)
.+..+..|+.+......+....... .............+...++..+..+..-. . ...++.| +..+.+++- +
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l~~-~ 270 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG--ERSLFCLKD-N 270 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe--cceEEEEcC-C
Confidence 9999999988755443332211000 00011223334456667777776664433 2 2233333 333333332 3
Q ss_pred ceEEEEecCCCCCeEEEEE----ecCC---CEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEE---EeeCCCEEEE
Q psy4869 1346 FKFFISLYGHKLPVLSLDM----SYDS---TLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT---FVPKTHYFFT 1415 (2435)
Q Consensus 1346 ~k~i~~~~~h~~~V~~la~----spdg---~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~la---f~P~~~~laS 1415 (2435)
|.+....+--..+.....| ..++ ..++.++.++.+.||.-. +++-..+-...|| +|. |..-.+.+++
T Consensus 271 G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~PV-al~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 271 GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHVPV-ALSVANFNGLKGLIVS 347 (418)
T ss_pred CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCCCCE-EEEecccCCCCceEEE
Confidence 3333333321222211112 1222 258889999999998643 3332222222333 333 3334578899
Q ss_pred EeCCCcEEEEECCCc
Q psy4869 1416 TSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1416 gg~Dg~V~lWd~~~~ 1430 (2435)
-+.||.|.+-=+-+.
T Consensus 348 Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 348 LSDEGQLSVSYLGTD 362 (418)
T ss_pred EcCCCcEEEEEeCCC
Confidence 999998877555543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.54 E-value=3.1 Score=49.77 Aligned_cols=185 Identities=14% Similarity=0.071 Sum_probs=115.2
Q ss_pred EEEEEEcCCCCEEEEEECCC--cEEEEEcCCCeEEEEEecCC-cCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEE
Q psy4869 1043 VLCARVSPDSKLLAVSLLDT--TVKIFFLDTFKFFISLYGHK-LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1119 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~~dg--~V~i~d~~~~~~~~~l~~h~-~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~ 1119 (2435)
-..+.|..+|.++-..+.-| .|+.+|+.+++......-.. .-=-.++.. ++++..-.=.++...+||.++.+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 34577777777776666554 78999999998776554211 111122222 223333345588899999999988888
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy4869 1120 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199 (2435)
Q Consensus 1120 l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iw 1199 (2435)
+.- ...=+.++. ++..|+.......++++|..+.+....+... .....-..++.+.+. +|...|=.-....|...
T Consensus 126 ~~y-~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 126 FPY-PGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred Eec-CCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 753 345567773 5777888888899999999998887766521 111223456778876 56555555567788999
Q ss_pred EccCCceeeEeec------------c---CCCEEEEEEeeCCCEEEEEE
Q psy4869 1200 GLDYGDCHKSLLA------------H---EDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1200 d~~t~~~~~~~~~------------h---~~~V~~i~~spd~~~lvsgs 1233 (2435)
|..+|+.+..+.- + .+-.+.|+|.|+.+.|+..+
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 9999997766530 1 34689999999776666655
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=95.37 E-value=17 Score=50.23 Aligned_cols=175 Identities=13% Similarity=0.217 Sum_probs=98.4
Q ss_pred CeEEEEeCCCCcceEeecC-----cccEEEEEECCCCC--EEEEEe-----------cCCeEEEEECC-CCcEEEEEe--
Q psy4869 470 CTVKVWDPRKKNQAVSMNN-----TYQVTSVAFNDTAE--CVLTGG-----------IDNDIKMWDLR-TNSVVQKLR-- 528 (2435)
Q Consensus 470 g~I~vwD~~~~~~~~~~~~-----~~~v~sv~~sp~g~--~l~sgs-----------~dg~V~lwD~~-s~~~v~~l~-- 528 (2435)
..|+++|..+++.+..+.+ ...+..+.|+.... ++++|. .+|.++.|++- .++.+.-+.
T Consensus 853 s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 853 SSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred ceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 3589999988887766532 33567777775444 344443 24557777753 344333222
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEE-
Q psy4869 529 GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYI- 607 (2435)
Q Consensus 529 ~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~i- 607 (2435)
.-.+.|. +..|...++++ +....+++||+.....-.++.... ....|.++.|- +..|+.|...-.|.+
T Consensus 933 ~~~~~v~--Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~------~p~~Is~iqt~--~~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen 933 EIPGPVG--AICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKF------IPNRISSIQTY--GARIVVGDIQESVHFV 1001 (1205)
T ss_pred CCCccce--EEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhcc------CceEEEEEeec--ceEEEEeeccceEEEE
Confidence 1223443 44555555544 466799999997533222222111 22356666664 566777766555554
Q ss_pred -EECCCCcEEEEecC--CCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccc
Q psy4869 608 -WDTTTRRIAYKLPG--HNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCD 657 (2435)
Q Consensus 608 -wd~~s~~~~~~l~~--h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~ 657 (2435)
|+.+..+++. +.. -...|+++.+- |...+|.|..=|.+++-.++....
T Consensus 1002 ~y~~~~n~l~~-fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d~~ 1052 (1205)
T KOG1898|consen 1002 RYRREDNQLIV-FADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPDVS 1052 (1205)
T ss_pred EEecCCCeEEE-EeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCcch
Confidence 4544444433 322 23557776665 444677777778888888775443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.29 E-value=8.8 Score=47.56 Aligned_cols=154 Identities=12% Similarity=0.110 Sum_probs=80.5
Q ss_pred cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 487 NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 487 ~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
.....+..+..+++|++++++.......-||.-...-...-+.-...|..|.|.||+...+.+ ..|.|++=+...
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~---- 216 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD---- 216 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT----
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC----
Confidence 345668888889999999988766666788865432333333456789999999998876654 888888876211
Q ss_pred CceEEEEeCc---ccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEec---CCCCCeeEEEEcCCCCEEEE
Q psy4869 567 ERCVKVMSGH---QHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP---GHNGSVNDVQFHPKEPIIMS 640 (2435)
Q Consensus 567 ~~~v~~~~~h---~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~---~h~~~V~~l~fspd~~~Las 640 (2435)
-...+..+ .......+..++|.+++...++|+... + +.....|+--.... .-...+..+.|.++. .-+.
T Consensus 217 --~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~ 291 (302)
T PF14870_consen 217 --DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-L-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFV 291 (302)
T ss_dssp --EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEE
T ss_pred --CccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-E-EEeCCCCccceECccccCCCCceEEEEEcCCC-ceEE
Confidence 11122211 111223578999999988887776543 2 23334444333322 234567888887654 4455
Q ss_pred EECCCcEEEe
Q psy4869 641 ASSDKTIYLG 650 (2435)
Q Consensus 641 gs~Dg~I~vW 650 (2435)
-+.||.|.-|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 5678876544
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.069 Score=68.28 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=77.7
Q ss_pred cccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeE-EEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q psy4869 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVL-SLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1312 ~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~-~la~spdg~~L~sGg~Dg~V~iwdl~~gk~ 1390 (2435)
.+...+.-+.|+|.-..+|.+..+|.|.++.+. .+.+.++.-|...++ +++|.|||++|+.|=.||+|++.|+..|..
T Consensus 18 ~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 18 SLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 445677889999999999999999999999888 777788886666666 999999999999999999999999999876
Q ss_pred EEEec-ccccceEEEEEe
Q psy4869 1391 HKSLL-AHEDSVTGVTFV 1407 (2435)
Q Consensus 1391 ~~~~~-~h~~~V~~laf~ 1407 (2435)
+.... --...|..+-|.
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 65422 223356666665
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.86 Score=61.79 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=101.5
Q ss_pred CEEEEEEcCCCCEEEEEE------CCCcEEEEEcC-CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECC-----------
Q psy4869 1042 QVLCARVSPDSKLLAVSL------LDTTVKIFFLD-TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD----------- 1103 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~------~dg~V~i~d~~-~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~D----------- 1103 (2435)
.+...+++|||+.++... .|..-.||-.. .+.......+. ....-.|+|||..|++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 466789999999888775 24333444332 22222222332 37778999998877766432
Q ss_pred -CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE---EeCCCcceeEEEEEEEeecc-cccCeEEE
Q psy4869 1104 -RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ---WDADNFERIVTLHFFISLYG-HKLPVLSL 1178 (2435)
Q Consensus 1104 -g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~i---wD~~~~~~~~~~~~~~~~~~-h~~~V~~l 1178 (2435)
+.+.+.+++.+.... .....|..+.|+|||..++... ++.|++ -....+. ..+.....+.. -...+..+
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCccccc
Confidence 223333333332222 2345799999999999887765 467776 4433343 22211122222 23346889
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEccC-CceeeEeec--cCCCEEEEEEeeCCCEEEEEECCCc
Q psy4869 1179 DMSYDSTLIATGSGDRTVKVWGLDY-GDCHKSLLA--HEDSVTGVTFVPKTHYFFTTSKDGR 1237 (2435)
Q Consensus 1179 ~~s~dg~~l~sgs~Dg~V~iwd~~t-~~~~~~~~~--h~~~V~~i~~spd~~~lvsgs~Dg~ 1237 (2435)
.|..++.++ ++..++...+|.+.- |.....+.. ...++..|+-.+. .++....++.
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 999888754 555555444554332 322222222 2556666666652 3444455553
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.4 Score=51.69 Aligned_cols=191 Identities=18% Similarity=0.223 Sum_probs=112.1
Q ss_pred ecccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC-------
Q psy4869 358 LEGHGGEIFCSKYHPDGQYIASSGYD-----RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST------- 425 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~~Lasgs~D-----g~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~------- 425 (2435)
+.||. .|+|||.+|...-.| |.|-|||.+.....+..+..|.-.-..+.|.+||+.|+.+..
T Consensus 115 fyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpd 188 (366)
T COG3490 115 FYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPD 188 (366)
T ss_pred eeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccc
Confidence 55774 599999999876444 789999999888888889999888899999999998887632
Q ss_pred -----------CCeEEEEECCCCceEEEEe----ccCccccccCcccCCCeEEEEEeCCC-----eEEEEeCCCCcceEe
Q psy4869 426 -----------DQTLAVWDLEKGQRIKKMK----GHSTFVNSCDPVRRGQLLIASGSDDC-----TVKVWDPRKKNQAVS 485 (2435)
Q Consensus 426 -----------Dg~I~vwd~~tg~~v~~l~----~h~~~v~sv~~~~~~~~llasgs~Dg-----~I~vwD~~~~~~~~~ 485 (2435)
.-++.+.|..+|+.+.+.. .+.-.+..++.-+++.-++ .+-..| --.+=....++.+..
T Consensus 189 fgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf-gcQy~G~~~d~ppLvg~~~~g~~l~~ 267 (366)
T COG3490 189 FGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF-GCQYRGPRNDLPPLVGHFRKGEPLEF 267 (366)
T ss_pred cCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE-EEEeeCCCccCCcceeeccCCCcCcc
Confidence 1123444444555443321 1222233333333332111 111100 000001112233322
Q ss_pred ec--------CcccEEEEEECCCCCEEEEEec-CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEE
Q psy4869 486 MN--------NTYQVTSVAFNDTAECVLTGGI-DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVR 556 (2435)
Q Consensus 486 ~~--------~~~~v~sv~~sp~g~~l~sgs~-dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~ 556 (2435)
+. ....|-+++.+.+..+++..+- .+...+||..+|..+..-.- .-+.-..+...-++..+.+|.++
T Consensus 268 ~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l----~daaGva~~~~gf~vssg~G~~~ 343 (366)
T COG3490 268 LDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL----PDAAGVAAAKGGFAVSSGQGRII 343 (366)
T ss_pred cCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc----cccccceeccCceEEecCCceEE
Confidence 21 2345778888876666665554 45677999999988754321 11122233455677778889888
Q ss_pred EEE
Q psy4869 557 IWD 559 (2435)
Q Consensus 557 lWd 559 (2435)
++.
T Consensus 344 ~~s 346 (366)
T COG3490 344 FYS 346 (366)
T ss_pred ecc
Confidence 875
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.036 Score=62.88 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=88.0
Q ss_pred EEEEEECCCcEEEEECCCCceEEE-EeeC--CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceee
Q psy4869 1228 YFFTTSKDGRVKQWDADNFERIVT-LHFN--PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLS 1304 (2435)
Q Consensus 1228 ~lvsgs~Dg~I~vwD~~~~~~v~~-~~~~--~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 1304 (2435)
.+...+.||.|.-++++..+.-.. ..+. ..........+++|+.++.|++|.......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~------------------- 92 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGA------------------- 92 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccch-------------------
Confidence 355566778888777764322111 0000 111223345789999999999998751110
Q ss_pred eeecccccccccEEEE-EecCCcceeEEeecCCeEEEEEcccceEEEEecCCC-CCeEEEEEecCCCEEEEE--eCCCcE
Q psy4869 1305 LLHTRTLKLEEQVLCA-RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK-LPVLSLDMSYDSTLIATG--SGDRTV 1380 (2435)
Q Consensus 1305 ~~~~~~~~~~~~i~~i-a~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~-~~V~~la~spdg~~L~sG--g~Dg~V 1380 (2435)
...+......+|.++ .--.++.+..++..+|+++.|+.+..+.+.....|. .++..+..+-.+++|+.+ +.|..+
T Consensus 93 -~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~ 171 (238)
T KOG2444|consen 93 -HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVL 171 (238)
T ss_pred -HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhh
Confidence 001111122344443 222345678889999999999999999888888887 666666667777777777 778888
Q ss_pred EEEeCCC
Q psy4869 1381 KVWGLDY 1387 (2435)
Q Consensus 1381 ~iwdl~~ 1387 (2435)
+.|++..
T Consensus 172 k~W~ve~ 178 (238)
T KOG2444|consen 172 KKWNVEK 178 (238)
T ss_pred hhcchhh
Confidence 8888764
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.67 E-value=16 Score=45.40 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=80.8
Q ss_pred EecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q psy4869 1078 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1157 (2435)
Q Consensus 1078 l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~ 1157 (2435)
...-.+.+..+..++||++++++.......-||-....-...-......|..+.|.|++...+.+ ..|.|++=+....
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~- 217 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD- 217 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE-
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC-
Confidence 34455779999999999988877665555677753322222223356789999999998766654 8888888872221
Q ss_pred eeEEEEE-EEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEee---ccCCCEEEEEEeeCCCEEEEEE
Q psy4869 1158 RIVTLHF-FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL---AHEDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1158 ~~~~~~~-~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~---~h~~~V~~i~~spd~~~lvsgs 1233 (2435)
...+.. ........-.+..++|.+++...++|+. |.+ +...+.|+.-+... .-...++.|.|.++.+ -++-+
T Consensus 218 -~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG 293 (302)
T PF14870_consen 218 -GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLG 293 (302)
T ss_dssp -EEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-
T ss_pred -ccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-eEEEC
Confidence 112211 1111123445899999988766666554 433 34455565333332 2345688999986644 55556
Q ss_pred CCCcEEEE
Q psy4869 1234 KDGRVKQW 1241 (2435)
Q Consensus 1234 ~Dg~I~vw 1241 (2435)
.+|.|.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 77877554
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.58 E-value=3.4 Score=50.22 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=92.3
Q ss_pred cccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEE-CCCCcEEE-E
Q psy4869 449 FVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWD-LRTNSVVQ-K 526 (2435)
Q Consensus 449 ~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD-~~s~~~v~-~ 526 (2435)
.+.+.++++++..+.+....++.-.+|-...+...........+..-.|++++...++...+...+++. ..+++... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 566778888887776666334444444444343333332444777889999988877777677666663 33333221 1
Q ss_pred E--ecCCCCEEEEEEcCCCCEEEEEE---CCCcEEEEEcCCCCCC-CceEEEEeCcccccccCeEEEEEcCCCCEEEEec
Q psy4869 527 L--RGHSDTVTGLSLSPDGSYILSNA---MDNTVRIWDIRPYVPG-ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGS 600 (2435)
Q Consensus 527 l--~~h~~~V~~i~~spdg~~las~s---~Dg~I~lWdl~~~~~~-~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs 600 (2435)
+ ..-.+.|..+.++|||.++|... .++.|.+=-+...... ...+.............+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 2 11122899999999999988655 3577777766532222 1111111111111234678999999998887776
Q ss_pred CCC
Q psy4869 601 ADK 603 (2435)
Q Consensus 601 ~Dg 603 (2435)
..+
T Consensus 185 ~~~ 187 (253)
T PF10647_consen 185 SAG 187 (253)
T ss_pred CCC
Confidence 543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.015 Score=75.85 Aligned_cols=203 Identities=15% Similarity=0.207 Sum_probs=116.2
Q ss_pred CCceEEEEEeC---CCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeE
Q psy4869 23 NCNVVFVTLKN---QEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSL 99 (2435)
Q Consensus 23 ~~~v~~~~~~~---~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i 99 (2435)
+|+|--++|-+ |.|+. .-|...+||++.-+........-+........-..|..+-+.++...++.+..+|.+
T Consensus 132 ~G~v~dl~fah~~~pk~~~----~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGRR----LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred CCCcccccccccCChHHHH----HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 56665555432 33332 245677899875432221111111111111111334344444566778888889999
Q ss_pred EEEECCCCCeEEEecCCCCCEEEEE-----------EcCCCCEEEEEeCCCCEEEEEccC-----CeeEEEEecCCC-cE
Q psy4869 100 KTFSLDTTDVISTFTGHKSAITVIQ-----------YDPLGHRLATGSKDTDIVLWDVVA-----ECGLHRLSGHKG-VI 162 (2435)
Q Consensus 100 ~i~d~~~~~~~~~l~gH~~~V~~l~-----------f~p~g~~laSgs~Dg~I~iWd~~~-----~~~~~~l~gH~~-~V 162 (2435)
++.+++.... ..|.+|...+..++ .+|||..+|.++.||.++.|.+.- .++++.++.|.+ +-
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~ 286 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPR 286 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCc
Confidence 9998887644 56777887766654 489999999999999999998642 335667788873 43
Q ss_pred EEEEEeecC-------CCcEEEEEeC-CCcEEEEeccCCccccccccccceEEEEEEEeCCC------------eEEEee
Q psy4869 163 TDIRFMSQP-------GHHFVVSSAK-DTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDS------------YLISGS 222 (2435)
Q Consensus 163 ~~v~~~~~~-------~~~~l~S~s~-Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~------------~l~s~s 222 (2435)
.|..++... -..++++++. ...+++|.....+|+-. .--+.|..|. -++++ .+++-+
T Consensus 287 vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~--~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~ 363 (1283)
T KOG1916|consen 287 VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLD--KLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRS 363 (1283)
T ss_pred eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhh--hcccceEeec-CCCccccchhhhHHHHHHHHHhh
Confidence 343354211 1235566554 55699999887777621 1122333333 22222 244566
Q ss_pred CCCcEEEEEcC
Q psy4869 223 NDAELKVWNVR 233 (2435)
Q Consensus 223 ~Dg~v~vwdl~ 233 (2435)
-|++|++|--+
T Consensus 364 v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 364 VDGTIKIWQNR 374 (1283)
T ss_pred hHHHHHHhhcc
Confidence 67777777443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.49 E-value=11 Score=49.01 Aligned_cols=154 Identities=12% Similarity=0.021 Sum_probs=92.1
Q ss_pred ccCCCEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCC----CCEEEEEECCCcEEEEEc
Q psy4869 1038 KLEEQVLCARVSPDSKLLAVSL--LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYD----STLIATGSGDRTVKVWGL 1111 (2435)
Q Consensus 1038 ~~~~~v~~l~~spdg~~Lavg~--~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spd----g~~L~Sgs~Dg~I~vWd~ 1111 (2435)
+.-.++..++|......+++.. .+|.+++-| -+.+..| ..|..+.|.|- -..|++.-....|.||.+
T Consensus 17 qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 17 QAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 3456788888874333444432 233333222 2223333 35899999985 335555677889999998
Q ss_pred c-----CCceeEEEecc-----CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEe
Q psy4869 1112 D-----YGDCHKSLLAH-----EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMS 1181 (2435)
Q Consensus 1112 ~-----t~~~~~~l~~h-----~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 1181 (2435)
. .++.+.....+ .---..+.|+|....|++-.....-.+++++......... ....+.|.|.+|.
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD-----i~~~G~IhCACWT 164 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD-----IKTSGLIHCACWT 164 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe-----ccCCceEEEEEec
Confidence 4 23332222111 1122567899988888777665555666665443332222 2467889999999
Q ss_pred CCCCEEEEEeC-CCcEEEEEccC
Q psy4869 1182 YDSTLIATGSG-DRTVKVWGLDY 1203 (2435)
Q Consensus 1182 ~dg~~l~sgs~-Dg~V~iwd~~t 1203 (2435)
.||++|+++-. .=.-++||-..
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCch
Confidence 99998877633 33467888653
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=12 Score=47.49 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=83.4
Q ss_pred cccEEEEEECCCCCEEEEEecCCeEEE-EECCCCcEEEE-EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 489 TYQVTSVAFNDTAECVLTGGIDNDIKM-WDLRTNSVVQK-LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 489 ~~~v~sv~~sp~g~~l~sgs~dg~V~l-wD~~s~~~v~~-l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
...+..+.+.|++.++++|. .|.+.. +|- .++.... ...-...++++.+.++++.++.+ ..|.+++=... .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d----~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD----D 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC----C
Confidence 45688999999987665554 555443 222 2222222 23345678999999999877665 55766532121 1
Q ss_pred CceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEec---CCCCCeeEEEEcCCCCEEEEEEC
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP---GHNGSVNDVQFHPKEPIIMSASS 643 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~---~h~~~V~~l~fspd~~~Lasgs~ 643 (2435)
+..-.............+..+.+.++++.+++| .+|.+. .....++--.... +-....+.+.|..+++.+ ..+.
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~ 321 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGF-VLGQ 321 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceE-EECC
Confidence 111111111100011246778899888766655 456544 3333343333332 222357778887666554 4667
Q ss_pred CCcEEEecC
Q psy4869 644 DKTIYLGES 652 (2435)
Q Consensus 644 Dg~I~vWd~ 652 (2435)
.|.|..|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 787776653
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.93 Score=46.49 Aligned_cols=100 Identities=22% Similarity=0.273 Sum_probs=68.4
Q ss_pred eeEEEEcc---CC-CEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcce
Q psy4869 408 VMDLKFST---DG-CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQA 483 (2435)
Q Consensus 408 V~~l~~s~---dg-~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~ 483 (2435)
|.+|++.. || ..|++|+.|..||+|+ ..+.+.++..+.. +..+..... ..|+-+-.+|+|.+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~-v~~L~~~~~--~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDK-VTSLCSLGG--GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccc-eEEEEEcCC--CEEEEEecCCEEEEEeC--ccee
Confidence 45555543 33 4799999999999999 4567777765544 444443333 46888999999999975 4455
Q ss_pred EeecCcccEEEEEECC-C--C-CEEEEEecCCeEE
Q psy4869 484 VSMNNTYQVTSVAFND-T--A-ECVLTGGIDNDIK 514 (2435)
Q Consensus 484 ~~~~~~~~v~sv~~sp-~--g-~~l~sgs~dg~V~ 514 (2435)
+....+..+.++++.. + | ..|++|=.+|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5566666677776654 2 2 2688888888764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.39 E-value=13 Score=47.19 Aligned_cols=157 Identities=11% Similarity=0.119 Sum_probs=81.1
Q ss_pred EEcCCCCEEEEEEC------CCcEEEEEcCCCeEEEEEecCC---cCEEEEEEcCCCCEEEEEEC---------------
Q psy4869 1047 RVSPDSKLLAVSLL------DTTVKIFFLDTFKFFISLYGHK---LPVLSLDMSYDSTLIATGSG--------------- 1102 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~------dg~V~i~d~~~~~~~~~l~~h~---~~V~sl~~spdg~~L~Sgs~--------------- 1102 (2435)
---|+|++++++.. -|.+.++|-++.+......... .--+.+.|.|..+.++|...
T Consensus 136 Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 136 HCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp EE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred eecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence 33468888887643 2668888888888877765422 23567788888888887542
Q ss_pred -----CCcEEEEEccCCceeEEEeccCC--CEEEEEEccCC--CE-EEEEeCCCcEEEEeC-CCcceeEEEEEEEeecc-
Q psy4869 1103 -----DRTVKVWGLDYGDCHKSLLAHED--SVTGVTFVPKT--HY-FFTTSKDGRVKQWDA-DNFERIVTLHFFISLYG- 1170 (2435)
Q Consensus 1103 -----Dg~I~vWd~~t~~~~~~l~~h~~--~V~~v~fsp~~--~~-l~s~s~Dg~V~iwD~-~~~~~~~~~~~~~~~~~- 1170 (2435)
..++.+||+.+.+.++++.--.. ....|.|..+. .+ ++.+--...|..|-- ..+. ...+.+..+..
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W~a~kVi~ip~~ 293 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--WAAEKVIDIPAK 293 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--EEEEEEEEE--E
T ss_pred hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--eeeeEEEECCCc
Confidence 34799999999999999875432 45678887643 33 333333444544433 3322 11221111111
Q ss_pred ----c------------ccCeEEEEEeCCCCEEEEEe-CCCcEEEEEccCCc
Q psy4869 1171 ----H------------KLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGD 1205 (2435)
Q Consensus 1171 ----h------------~~~V~~l~~s~dg~~l~sgs-~Dg~V~iwd~~t~~ 1205 (2435)
- ..-|+.|.++-|.++|++.. .+|.||.||+....
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 1 24478999999999998877 68999999998643
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.016 Score=67.90 Aligned_cols=54 Identities=17% Similarity=0.346 Sum_probs=41.8
Q ss_pred ceEEEEEEeccCCCCcc-eEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEeecC
Q psy4869 2356 IHSVKIIGWGKSSQNEP-YWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAKLE 2413 (2435)
Q Consensus 2356 ~Hav~iVGyg~~~~g~~-yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~~~ 2413 (2435)
.|||+|.|.+.+++|.+ -|.|.||||..=|.+|||-+.-. -++.+.+..+.+.+
T Consensus 362 THAMvlTGvd~d~~g~p~rwkVENSWG~d~G~~GyfvaSd~----wmdEytyQIvV~k~ 416 (444)
T COG3579 362 THAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYFVASDA----WMDEYTYQIVVDKK 416 (444)
T ss_pred HHHHHhhccccccCCCceeeEeecccccccCCCceEeehHh----HhhhheeEEEEehh
Confidence 49999999999888766 69999999999999999987532 24445555555543
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.12 Score=69.78 Aligned_cols=84 Identities=14% Similarity=0.269 Sum_probs=68.8
Q ss_pred CCCCeEEEEEcCCeEEEEECCCC-CeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEE
Q psy4869 85 HDSSQLAVAYTNGSLKTFSLDTT-DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVIT 163 (2435)
Q Consensus 85 ~d~~~lav~~~~G~i~i~d~~~~-~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~ 163 (2435)
..+..+|+|+..|.+..+|+... .+.+.-..-.++|++++|+.+|.+++.|=.+|.|.+||+...+.++.+..|..+++
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 34567899999999999998863 33333333468999999999999999999999999999999999999888888777
Q ss_pred EEEEe
Q psy4869 164 DIRFM 168 (2435)
Q Consensus 164 ~v~~~ 168 (2435)
.+-++
T Consensus 177 ~vi~v 181 (1206)
T KOG2079|consen 177 GVIFV 181 (1206)
T ss_pred eEEEE
Confidence 76654
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.22 Score=67.43 Aligned_cols=102 Identities=15% Similarity=0.250 Sum_probs=75.7
Q ss_pred CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccc
Q psy4869 373 DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNS 452 (2435)
Q Consensus 373 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~s 452 (2435)
.+..++.|+..|.|-..|+.+.......-..-.++|.+++|+.||..++.|-.+|.|.+||+..++..+.+..|..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 45678999999999999987654332222334689999999999999999999999999999999999999888776655
Q ss_pred cCc---ccCCCeEEEEEeCCCeEEEEeC
Q psy4869 453 CDP---VRRGQLLIASGSDDCTVKVWDP 477 (2435)
Q Consensus 453 v~~---~~~~~~llasgs~Dg~I~vwD~ 477 (2435)
+-+ ..++ ..+.++...|. +|.+
T Consensus 178 vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 433 2222 24556555554 5543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.01 E-value=8.1 Score=46.31 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=98.1
Q ss_pred CEEEEEEcCCCCEEEEEECCC--cEEEEEccCCceeEEEeccC-CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeE
Q psy4869 1084 PVLSLDMSYDSTLIATGSGDR--TVKVWGLDYGDCHKSLLAHE-DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160 (2435)
Q Consensus 1084 ~V~sl~~spdg~~L~Sgs~Dg--~I~vWd~~t~~~~~~l~~h~-~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~ 1160 (2435)
-...+.|..++.++-+.+.-| .|+.+|+++|+......-.. ----.++.. +++...-.-.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence 366788877888888888876 69999999999776654322 122334443 34445555678899999999988877
Q ss_pred EEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccC-----CCEEEEEEeeCCCEEEEEECC
Q psy4869 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE-----DSVTGVTFVPKTHYFFTTSKD 1235 (2435)
Q Consensus 1161 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~-----~~V~~i~~spd~~~lvsgs~D 1235 (2435)
.+. ..+.=+.++ .++..|+.......++.+|.++.+..+.+.... ..++.+.|. +|...+-.-..
T Consensus 125 ~~~-------y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 125 TFP-------YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp EEE--------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred EEe-------cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence 764 234556666 357778877777899999999888777665332 246667776 45433333345
Q ss_pred CcEEEEECCCCceEEE
Q psy4869 1236 GRVKQWDADNFERIVT 1251 (2435)
Q Consensus 1236 g~I~vwD~~~~~~v~~ 1251 (2435)
..|...|..+++.+..
T Consensus 195 d~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGW 210 (264)
T ss_dssp SEEEEEETTT-BEEEE
T ss_pred CeEEEEeCCCCeEEEE
Confidence 5566666666554433
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.99 E-value=27 Score=45.36 Aligned_cols=145 Identities=10% Similarity=0.145 Sum_probs=91.0
Q ss_pred CCEEEEEeCCCeEEEEecCCce-e--eEEEeeCCCCCeeEEEEcc----CCCEEEEEeCCCeEEEEECCC--Cc------
Q psy4869 374 GQYIASSGYDRQIFIWSVYGEC-E--NIGVMSGHTGAVMDLKFST----DGCHIFTCSTDQTLAVWDLEK--GQ------ 438 (2435)
Q Consensus 374 g~~Lasgs~Dg~I~iwd~~~~~-~--~~~~l~~h~~~V~~l~~s~----dg~~L~s~s~Dg~I~vwd~~t--g~------ 438 (2435)
...|+.|+.+|.+|||+-.... . .+.....-..+|.+|+... .....++.=.-+.+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 4689999999999999875322 1 1222234568999988753 233444555677888888731 11
Q ss_pred -eEEEEeccCcccc--ccCc----ccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCC
Q psy4869 439 -RIKKMKGHSTFVN--SCDP----VRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDN 511 (2435)
Q Consensus 439 -~v~~l~~h~~~v~--sv~~----~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg 511 (2435)
.+..+..|.-.-. .+.. ...+...+..=+.||.+.+|+-+.-.....+..---...+.|.+.-+.|++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 2223333321111 1111 12235678888999999999977655444444333345678888889999999998
Q ss_pred eEEEEEC
Q psy4869 512 DIKMWDL 518 (2435)
Q Consensus 512 ~V~lwD~ 518 (2435)
.|.-|..
T Consensus 197 ~l~~Yky 203 (418)
T PF14727_consen 197 TLECYKY 203 (418)
T ss_pred eEEEecH
Confidence 9988864
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.77 E-value=5.4 Score=47.69 Aligned_cols=170 Identities=12% Similarity=0.151 Sum_probs=111.1
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG-HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~-h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~ 1118 (2435)
...++++.|+|+.+.|++......-.|+--..|+.++++.- .-..--+|.|..+|.++++--.++.+.++.++.+..+.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 34599999999999998888677666776667888887642 12233466777788888887889999998886653222
Q ss_pred EE-------e--cc-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeec----ccccCeEEEEEeC-C
Q psy4869 1119 SL-------L--AH-EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLY----GHKLPVLSLDMSY-D 1183 (2435)
Q Consensus 1119 ~l-------~--~h-~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~----~h~~~V~~l~~s~-d 1183 (2435)
.+ . .+ +...-.++|.|..+.|+.+-.-+-+.+|.+.........+...... -.-..|.++.|++ .
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 11 1 13 6678899999998888888777778888766433222221100000 0123466677775 5
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeeEe
Q psy4869 1184 STLIATGSGDRTVKVWGLDYGDCHKSL 1210 (2435)
Q Consensus 1184 g~~l~sgs~Dg~V~iwd~~t~~~~~~~ 1210 (2435)
+..++-+..++.+.-.|.. |..+..+
T Consensus 245 ~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 245 NSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred CcEEEEecCCceEEEEecC-CCeeeeE
Confidence 5666777777777777776 4434333
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=40 Score=47.29 Aligned_cols=239 Identities=9% Similarity=0.008 Sum_probs=120.0
Q ss_pred CcEEEEEECCCCCEEEEEeCC-----CeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC------CeEEE
Q psy4869 363 GEIFCSKYHPDGQYIASSGYD-----RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD------QTLAV 431 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~D-----g~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D------g~I~v 431 (2435)
-.+..+.++|||++|+-+-.. ..|++.|+.++......+. +.-..++|.+|++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc---CcceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 345678899999988876322 3577888765431111121 112569999999877665442 36888
Q ss_pred EECCCC--ceEEEEeccCcccc-ccCcccCCCeEEEEEeC--CCeEEEEeCC--CCcceEeecCcccE-EEEEECCCCCE
Q psy4869 432 WDLEKG--QRIKKMKGHSTFVN-SCDPVRRGQLLIASGSD--DCTVKVWDPR--KKNQAVSMNNTYQV-TSVAFNDTAEC 503 (2435)
Q Consensus 432 wd~~tg--~~v~~l~~h~~~v~-sv~~~~~~~~llasgs~--Dg~I~vwD~~--~~~~~~~~~~~~~v-~sv~~sp~g~~ 503 (2435)
+++.++ +....+.+...... .+....++..+++.... ++.+.+++.. .+...........+ ..+. +.. ..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 281 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HR 281 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CE
Confidence 898887 33333333222222 22223355555544333 4578888853 23322222222222 2222 223 33
Q ss_pred EEEEec----CCeEEEEECCCCcEEEEEecC-C-CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEe-Cc
Q psy4869 504 VLTGGI----DNDIKMWDLRTNSVVQKLRGH-S-DTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMS-GH 576 (2435)
Q Consensus 504 l~sgs~----dg~V~lwD~~s~~~v~~l~~h-~-~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~-~h 576 (2435)
++.-+. ...|...++........+-.+ . ..|..+.+. .+.++++...++.-+++-+... ...+..+. ..
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~---~~~~~~l~~~~ 357 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRK---TREVIGIAFDD 357 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCC---CCceEEecCCC
Confidence 333332 234555555522222334444 3 368888887 3345556667887777665421 12222222 11
Q ss_pred ccccccCeEEEEEc--CCC-CEEEEecC---CCeEEEEECCCCc
Q psy4869 577 QHNFEKNLLRCAWS--VSG-LYVTAGSA---DKCVYIWDTTTRR 614 (2435)
Q Consensus 577 ~~~~~~~i~~v~~s--pdg-~~Lasgs~---Dg~V~iwd~~s~~ 614 (2435)
. ..+..+.++ +++ .++++.+. -+.+..+|..+++
T Consensus 358 ~----~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 358 P----AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred C----ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 0 112222333 333 34444332 4678888988765
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.15 Score=58.02 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=60.8
Q ss_pred cceeEEeecCCeEEEEEcccceE-EEEecCCCCCe-EEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEE
Q psy4869 1326 SKLLAVSLLDTTVKIFFLDTFKF-FISLYGHKLPV-LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1403 (2435)
Q Consensus 1326 g~~lavgs~dG~V~v~d~~~~k~-i~~~~~h~~~V-~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~ 1403 (2435)
+.-+++|+.+|.|++|...-... ...+......+ +.+.-..++.+.++|+.||.||.|+.+.++.+.....|..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~---- 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF---- 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC----
Confidence 56799999999999999863211 11111112222 2223334667899999999999999999998877777763
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1404 VTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1404 laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
-++..+++.+.|+.|.+|++..
T Consensus 146 ----~~~e~~ivv~sd~~i~~a~~S~ 167 (238)
T KOG2444|consen 146 ----ESGEELIVVGSDEFLKIADTSH 167 (238)
T ss_pred ----CCcceeEEecCCceEEeecccc
Confidence 2233444444455555554443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.48 E-value=7.1 Score=46.74 Aligned_cols=174 Identities=12% Similarity=0.128 Sum_probs=118.6
Q ss_pred ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q psy4869 1079 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA-HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1157 (2435)
Q Consensus 1079 ~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~-h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~ 1157 (2435)
.+-...|.++.|+|+.+.|++......-.||=...|+.++++.- .-...-.|+|..++.++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 44555699999999999999888888888887788999988753 12234577888788888888889999998877654
Q ss_pred eeEEEEEE-Eee--ccc-ccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce---eeEeecc-------CCCEEEEEEe
Q psy4869 1158 RIVTLHFF-ISL--YGH-KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC---HKSLLAH-------EDSVTGVTFV 1223 (2435)
Q Consensus 1158 ~~~~~~~~-~~~--~~h-~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~---~~~~~~h-------~~~V~~i~~s 1223 (2435)
........ ..+ ..+ ..+.-.++|.+....|+.+-...-++||....+.. +.....+ -..|.++.|.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 43333221 111 122 66788999999999999998888888887764331 1111111 2357788888
Q ss_pred e-CCCEEEEEECCCcEEEEECCCCceEEEEe
Q psy4869 1224 P-KTHYFFTTSKDGRVKQWDADNFERIVTLH 1253 (2435)
Q Consensus 1224 p-d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~ 1253 (2435)
+ .+..++-+..++.+...|..... +..+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~~-~~~ls 271 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGEV-IELLS 271 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCCe-eeeEE
Confidence 7 45555556677778777776543 44443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=93.05 E-value=2.8 Score=43.18 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=67.5
Q ss_pred CcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCC
Q psy4869 454 DPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDT 533 (2435)
Q Consensus 454 ~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~ 533 (2435)
.|..++..-|+.|++|..||+|+-. ..+..+.....|.+++-... ..|+.|-.+|+|-+|+-.. .+...+. +..
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiKS-K~~ 82 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIKS-KNQ 82 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeecc-CCC
Confidence 3445666789999999999999854 66777777888888887766 5688999999999998632 2233332 233
Q ss_pred EEEEEEcC---CC-CEEEEEECCCcEE
Q psy4869 534 VTGLSLSP---DG-SYILSNAMDNTVR 556 (2435)
Q Consensus 534 V~~i~~sp---dg-~~las~s~Dg~I~ 556 (2435)
+.++.+.. || ..|++|=.+|.|-
T Consensus 83 ~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 83 VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 56655443 23 2577777777664
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.81 E-value=36 Score=43.29 Aligned_cols=262 Identities=14% Similarity=0.144 Sum_probs=123.2
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEE-EeecccccCeEEEEEeCC---CCEEEEEeCC--------
Q psy4869 1126 SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFF-ISLYGHKLPVLSLDMSYD---STLIATGSGD-------- 1193 (2435)
Q Consensus 1126 ~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~-~~~~~h~~~V~~l~~s~d---g~~l~sgs~D-------- 1193 (2435)
.-+.++|.|++++++ +...|.|++++ ..+.....+... ............++++|+ ..+|++....
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987655 46699999999 333331222111 112345678899999994 3455444331
Q ss_pred -CcEEEEEccCC-------ce-eeEeec---cCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCccccc
Q psy4869 1194 -RTVKVWGLDYG-------DC-HKSLLA---HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLP 1261 (2435)
Q Consensus 1194 -g~V~iwd~~t~-------~~-~~~~~~---h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~ 1261 (2435)
..|.-|.+..+ +. +..+.. .......|.|.||+.+.++.+..+. ... ......
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~-----~~~----------~~~~~~ 145 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN-----DDN----------AQDPNS 145 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT-----GGG----------GCSTTS
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC-----ccc----------cccccc
Confidence 23444444433 11 111122 2345677999999977776665444 000 000000
Q ss_pred CceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCC-cceeEEe-ecCCeEE
Q psy4869 1262 LQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD-SKLLAVS-LLDTTVK 1339 (2435)
Q Consensus 1262 ~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spd-g~~lavg-s~dG~V~ 1339 (2435)
...+++....|+.+. ..+.. .. ..... .......+.. ...++|.|. |+++++= +.++.=.
T Consensus 146 ~~G~ilri~~dG~~p-----------~dnP~---~~-~~~~~--~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~de 207 (331)
T PF07995_consen 146 LRGKILRIDPDGSIP-----------ADNPF---VG-DDGAD--SEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDE 207 (331)
T ss_dssp STTEEEEEETTSSB------------TTSTT---TT-STTST--TTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEE
T ss_pred ccceEEEecccCcCC-----------CCCcc---cc-CCCce--EEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcE
Confidence 011112212222100 00000 00 00000 0011111222 235677777 6666542 2222222
Q ss_pred EEEcccc-----------------------------eEEEEecCCCCCeEEEEEec-------CCCEEEEEeCCCcEEEE
Q psy4869 1340 IFFLDTF-----------------------------KFFISLYGHKLPVLSLDMSY-------DSTLIATGSGDRTVKVW 1383 (2435)
Q Consensus 1340 v~d~~~~-----------------------------k~i~~~~~h~~~V~~la~sp-------dg~~L~sGg~Dg~V~iw 1383 (2435)
|..+..+ .++..+..| ..+..+.|-. +|.++++.-..+.|...
T Consensus 208 in~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~ 286 (331)
T PF07995_consen 208 INRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRL 286 (331)
T ss_dssp EEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEE
T ss_pred EEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEE
Confidence 2222221 123333333 4566666643 45677776667788888
Q ss_pred eCCCCceEEE----ecccccceEEEEEeeCCCEEEEEeCCCcEE
Q psy4869 1384 GLDYGDCHKS----LLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1423 (2435)
Q Consensus 1384 dl~~gk~~~~----~~~h~~~V~~laf~P~~~~laSgg~Dg~V~ 1423 (2435)
.++.+.-+.. +......+..|++.|||.++++-..+|.|.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 287 DLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred eeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 8875432221 223444799999999999999888888773
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.71 E-value=37 Score=43.18 Aligned_cols=67 Identities=12% Similarity=-0.017 Sum_probs=41.8
Q ss_pred ccEEEEEecC-------CcceeEEeecCCeEEEEEcccceEEE---E-ecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy4869 1315 EQVLCARVSP-------DSKLLAVSLLDTTVKIFFLDTFKFFI---S-LYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1381 (2435)
Q Consensus 1315 ~~i~~ia~sp-------dg~~lavgs~dG~V~v~d~~~~k~i~---~-~~~h~~~V~~la~spdg~~L~sGg~Dg~V~ 1381 (2435)
..+..+.|.. .|.+|+..-..++|..+.++....+. . +......+.++++.|||.+.++-+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4445555542 45666666667788888887543222 1 223444799999999999888887888775
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=92.52 E-value=61 Score=45.25 Aligned_cols=99 Identities=10% Similarity=0.040 Sum_probs=58.2
Q ss_pred EecCCcceeEEeecCCeEEEEEcccceEEEEecCCC--CCeEEEEEecCCCEEEEEeCCCcEEEEeC--CCCceEEEe-c
Q psy4869 1321 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK--LPVLSLDMSYDSTLIATGSGDRTVKVWGL--DYGDCHKSL-L 1395 (2435)
Q Consensus 1321 a~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~--~~V~~la~spdg~~L~sGg~Dg~V~iwdl--~~gk~~~~~-~ 1395 (2435)
++.|-..+ +.++....+++||+.+.++++..+-.. .-|..+.+ .+..|+.|..-..|.++.. ...+++.-. .
T Consensus 940 Ai~~f~~~-~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGR-VLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCE-EEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 44455554 444567899999999888766555332 33444444 6678888887776665544 334443322 2
Q ss_pred ccccceEEEEEeeCCCEEEEEeCCCcEE
Q psy4869 1396 AHEDSVTGVTFVPKTHYFFTTSKDGRVK 1423 (2435)
Q Consensus 1396 ~h~~~V~~laf~P~~~~laSgg~Dg~V~ 1423 (2435)
.-..||+++.+- |...+|.+..=|.+.
T Consensus 1017 ~~pR~Vt~~~~l-D~~tvagaDrfGNi~ 1043 (1205)
T KOG1898|consen 1017 PVPRHVTALELL-DYDTVAGADRFGNIA 1043 (1205)
T ss_pred CccceeeEEEEe-cCCceeeccccCcEE
Confidence 334578887775 444666444334333
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=92.46 E-value=5.5 Score=45.69 Aligned_cols=134 Identities=11% Similarity=0.112 Sum_probs=91.8
Q ss_pred CCCeeEEEEccCCCEEEEEeCC---------CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEE
Q psy4869 405 TGAVMDLKFSTDGCHIFTCSTD---------QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVW 475 (2435)
Q Consensus 405 ~~~V~~l~~s~dg~~L~s~s~D---------g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vw 475 (2435)
+...++-..+|+|+++.-...| |.++.|-. +..+..+...-..-+.++|..+...+...-+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 4566777788999884332222 34455543 233334444444556788887777777788888888888
Q ss_pred e--CCCCc-----ceEeecC-----cccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEc
Q psy4869 476 D--PRKKN-----QAVSMNN-----TYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLS 540 (2435)
Q Consensus 476 D--~~~~~-----~~~~~~~-----~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~s 540 (2435)
| ..++. .+..+.. ....-.+++.-+|++.++.-..|+|..+|..+|+.+..++-....|++++|-
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 8 44443 2222211 1123456667788888888889999999999999999999889999999996
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=92.00 E-value=1 Score=61.59 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=98.0
Q ss_pred CCCeeEEEEccCCCEEEEEe--CCCeEEEEECCCCce-----EEEEecc------CccccccCcccCCCeEEEEEeCCCe
Q psy4869 405 TGAVMDLKFSTDGCHIFTCS--TDQTLAVWDLEKGQR-----IKKMKGH------STFVNSCDPVRRGQLLIASGSDDCT 471 (2435)
Q Consensus 405 ~~~V~~l~~s~dg~~L~s~s--~Dg~I~vwd~~tg~~-----v~~l~~h------~~~v~sv~~~~~~~~llasgs~Dg~ 471 (2435)
.-+|..+...+|+...++.. .+-.|..||+++-.. ..-++.| .....++.|.|.-+...+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 35677777778876555443 344799999875321 1112222 2344577888887777888899999
Q ss_pred EEEEeCCCCcc-eEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEec----CCCCEEEEEEcCCCCEE
Q psy4869 472 VKVWDPRKKNQ-AVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG----HSDTVTGLSLSPDGSYI 546 (2435)
Q Consensus 472 I~vwD~~~~~~-~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~----h~~~V~~i~~spdg~~l 546 (2435)
|++..+..... ...+......++++|+|.|+.++.|...|++.-|... .+....+.+ ....|.+|+|-....++
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 99988764433 3334667789999999999999999999999888754 333333321 24689999998776666
Q ss_pred EE
Q psy4869 547 LS 548 (2435)
Q Consensus 547 as 548 (2435)
+.
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 64
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.91 E-value=34 Score=40.99 Aligned_cols=189 Identities=9% Similarity=0.014 Sum_probs=110.5
Q ss_pred CcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCccee
Q psy4869 1082 KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1159 (2435)
Q Consensus 1082 ~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~--~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~ 1159 (2435)
..-+..+.++ ++++..+..+.-++|.|+.+...-..+. ...+.-.++.. .|++.+++..|.-+.+.|+.+....
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 3445666665 4577788888899999997654322221 12233344444 5899999998889999999876543
Q ss_pred EEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEee--ccCCCEEEEEEeeCCCEEEEEECCCc
Q psy4869 1160 VTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVPKTHYFFTTSKDGR 1237 (2435)
Q Consensus 1160 ~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~--~h~~~V~~i~~spd~~~lvsgs~Dg~ 1237 (2435)
.... +..........++.+ |++.+.+..|+-+.+.|+.....-..+. .....+.++..+++..+++. .+.-
T Consensus 162 ~lag---rya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv--y~eg 234 (370)
T COG5276 162 QLAG---RYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV--YDEG 234 (370)
T ss_pred eeee---eeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE--cccc
Confidence 3222 112233344566665 7788888899999999998654222111 22236777777765544443 3445
Q ss_pred EEEEECCCCceEEEEee--CCccc-----ccCceEEEEEECCCeEEEEEcc
Q psy4869 1238 VKQWDADNFERIVTLHF--NPNVY-----LPLQIQVVTGGGDKSVKLWQLE 1281 (2435)
Q Consensus 1238 I~vwD~~~~~~v~~~~~--~~~~~-----~~~~~~lv~g~~d~~v~iwdl~ 1281 (2435)
+.+-|....+....+.. ..... ...+.+......++-+.+-|+.
T Consensus 235 vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idis 285 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDIS 285 (370)
T ss_pred eEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEecc
Confidence 66667776654333321 11111 1122344445555556666554
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=91.69 E-value=3.3 Score=56.30 Aligned_cols=216 Identities=15% Similarity=0.149 Sum_probs=114.8
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCceEEEEeccCccc-cccCcccCCCeEEEEEeCC------CeEEEEeCCCCcc
Q psy4869 416 DGCHIFTCSTD------QTLAVWDLEKGQRIKKMKGHSTFV-NSCDPVRRGQLLIASGSDD------CTVKVWDPRKKNQ 482 (2435)
Q Consensus 416 dg~~L~s~s~D------g~I~vwd~~tg~~v~~l~~h~~~v-~sv~~~~~~~~llasgs~D------g~I~vwD~~~~~~ 482 (2435)
.+..++.|+.+ ..+..+|..++++.....-..... .+++.. ++.+.++|+.| .++..||.+..+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 34566667666 358899988876544333222222 122222 33788889998 3578889887764
Q ss_pred eEeec---CcccEEEEEECCCCCEEEEEecCCe-----EEEEECCCCc--EEEEEecCCCCEEEEEEcCCCCEEEEEECC
Q psy4869 483 AVSMN---NTYQVTSVAFNDTAECVLTGGIDND-----IKMWDLRTNS--VVQKLRGHSDTVTGLSLSPDGSYILSNAMD 552 (2435)
Q Consensus 483 ~~~~~---~~~~v~sv~~sp~g~~l~sgs~dg~-----V~lwD~~s~~--~v~~l~~h~~~V~~i~~spdg~~las~s~D 552 (2435)
..... ......... -+|...|+|+.||. |-.||.++.+ .+..+.........+.+ +|...+.|+.|
T Consensus 362 ~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~ 437 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGD 437 (571)
T ss_pred eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcC
Confidence 33221 111122222 26778888988864 6778877653 33323222222222223 57778888866
Q ss_pred C------cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCe-----EEEEECCCCcEEEE--e
Q psy4869 553 N------TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKC-----VYIWDTTTRRIAYK--L 619 (2435)
Q Consensus 553 g------~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~-----V~iwd~~s~~~~~~--l 619 (2435)
+ ++..||..+..- +.+..+.... .-..+ -.-++.+.+.|+.|+. |..||.++.+.... +
T Consensus 438 ~~~~~l~sve~YDP~t~~W--~~~~~M~~~R-----~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTW--TLIAPMNTRR-----SGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred CCccccceEEEEcCCCCce--eecCCccccc-----ccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 4 456677654211 1111111110 01111 1236788888887763 77899887654432 2
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEECCCcE
Q psy4869 620 PGHNGSVNDVQFHPKEPIIMSASSDKTI 647 (2435)
Q Consensus 620 ~~h~~~V~~l~fspd~~~Lasgs~Dg~I 647 (2435)
......+-.+.+ ++...+.|+.||.-
T Consensus 510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 510 TSPRSAVGVVVL--GGKLYAVGGFDGNN 535 (571)
T ss_pred ccccccccEEEE--CCEEEEEecccCcc
Confidence 222233322222 46678888888753
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=91.61 E-value=4.6 Score=54.99 Aligned_cols=229 Identities=16% Similarity=0.181 Sum_probs=119.4
Q ss_pred CCCEEEEEeCCC------eEEEEecCCc-eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC------CeEEEEECCCCce
Q psy4869 373 DGQYIASSGYDR------QIFIWSVYGE-CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD------QTLAVWDLEKGQR 439 (2435)
Q Consensus 373 dg~~Lasgs~Dg------~I~iwd~~~~-~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D------g~I~vwd~~tg~~ 439 (2435)
.+.+++.||.++ .+..+|...+ ......+. +...-.+++.. ++...++|+.| ..+..||..++++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 466777887773 5677776554 22222222 22223334443 45677888888 3578899888875
Q ss_pred EEEEeccCccccccCcccCCCeEEEEEeCCCe-----EEEEeCCCCcceEeecCcccEEEEEE-CCCCCEEEEEecCC--
Q psy4869 440 IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT-----VKVWDPRKKNQAVSMNNTYQVTSVAF-NDTAECVLTGGIDN-- 511 (2435)
Q Consensus 440 v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~-----I~vwD~~~~~~~~~~~~~~~v~sv~~-sp~g~~l~sgs~dg-- 511 (2435)
...-.-... -.......-++.+.+.|+.||. +-.||..+.+..............+. .-+|.+.++|+.++
T Consensus 362 ~~~a~M~~~-R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 362 TPVAPMNTK-RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred eccCCccCc-cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 542221111 1112222334578888998864 77788876654433322222222221 23677777887543
Q ss_pred ----eEEEEECCCCcE--EEEEecCCCCEEEEEEcCCCCEEEEEECCCc-----EEEEEcCCCCCCCceEEEEeCccccc
Q psy4869 512 ----DIKMWDLRTNSV--VQKLRGHSDTVTGLSLSPDGSYILSNAMDNT-----VRIWDIRPYVPGERCVKVMSGHQHNF 580 (2435)
Q Consensus 512 ----~V~lwD~~s~~~--v~~l~~h~~~V~~i~~spdg~~las~s~Dg~-----I~lWdl~~~~~~~~~v~~~~~h~~~~ 580 (2435)
.|..||..+++. +..+..-........ -++...+.|+.|+. |..||.+... ...+..+....
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v~~m~~~r--- 513 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQ--WTMVAPMTSPR--- 513 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCc--eeEcccCcccc---
Confidence 578899887643 233321111111122 25777788887763 6667766421 11111111111
Q ss_pred ccCeEEEEEcCCCCEEEEecCCC-----eEEEEECCCCc
Q psy4869 581 EKNLLRCAWSVSGLYVTAGSADK-----CVYIWDTTTRR 614 (2435)
Q Consensus 581 ~~~i~~v~~spdg~~Lasgs~Dg-----~V~iwd~~s~~ 614 (2435)
.-..+ ..-+++..+.|+.|| +|..||..+.+
T Consensus 514 --s~~g~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 514 --SAVGV-VVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred --ccccE-EEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 01111 122567778888776 46667766554
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=62 Score=45.46 Aligned_cols=196 Identities=8% Similarity=0.007 Sum_probs=100.3
Q ss_pred CCeeEEEEccCCCEEEEEeCC-----CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC-----CeEEEE
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTD-----QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD-----CTVKVW 475 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~D-----g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D-----g~I~vw 475 (2435)
-.+..+.|+||+++|+.+... -.|++.|+.+|+.+...-.... ..+.|.+++..++.+.-.+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 346678999999988765432 2588999988864322211111 3578998888777765533 367888
Q ss_pred eCCCC--cceEeecC-cccEE-EEEECCCCCEEEEEec---CCeEEEEECC--CCcEEEEEecCCCCEEEEEEcCCCCEE
Q psy4869 476 DPRKK--NQAVSMNN-TYQVT-SVAFNDTAECVLTGGI---DNDIKMWDLR--TNSVVQKLRGHSDTVTGLSLSPDGSYI 546 (2435)
Q Consensus 476 D~~~~--~~~~~~~~-~~~v~-sv~~sp~g~~l~sgs~---dg~V~lwD~~--s~~~v~~l~~h~~~V~~i~~spdg~~l 546 (2435)
++.++ +....+.. ..... .+..+.++++++.... ++.+.+++.. .++....+....+....+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88877 32223321 22222 3344558887775543 4578999953 3443222322222333332 2223333
Q ss_pred EEEEC-CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEE
Q psy4869 547 LSNAM-DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWD 609 (2435)
Q Consensus 547 as~s~-Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd 609 (2435)
+.... ....+|..+....+ .+ ...+..+.. ...+..+.+. .+.++++...+|.-+++-
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~-~~-~~~l~~~~~--~~~i~~~~~~-~~~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDE-QQ-WEELIPPRE--NIMLEGFTLF-TDWLVVEERQRGLTSLRQ 342 (686)
T ss_pred EEEcCCCCCceEEEecCCCc-cc-CeEEECCCC--CCEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 33222 23344444332111 11 122222211 1245667776 335555666677654443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.79 E-value=26 Score=45.26 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=79.1
Q ss_pred EEEEEECCCCCEEEEEe-----------CCC-eEEEEecCC---ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeE
Q psy4869 365 IFCSKYHPDGQYIASSG-----------YDR-QIFIWSVYG---ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTL 429 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs-----------~Dg-~I~iwd~~~---~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I 429 (2435)
...++|.++|+++++-. ..+ +|.+++-.+ .......+.........|++.+++ |+++......
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEE
Confidence 34678888998777642 223 777775432 112223333334566889999888 4444444433
Q ss_pred EEEECCC-----Cce--E-EEEec----cCccccccCcccCCCeEEEEEeCC------------------CeEEEEeCCC
Q psy4869 430 AVWDLEK-----GQR--I-KKMKG----HSTFVNSCDPVRRGQLLIASGSDD------------------CTVKVWDPRK 479 (2435)
Q Consensus 430 ~vwd~~t-----g~~--v-~~l~~----h~~~v~sv~~~~~~~~llasgs~D------------------g~I~vwD~~~ 479 (2435)
++.|.+. ++. + ..+.. +....+.+.|.|++..++..++.. +.|.-+|...
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 4445432 121 1 12222 234467888999886666555321 3455555554
Q ss_pred CcceEeecCcccEEEEEECCCCCEEEEEe
Q psy4869 480 KNQAVSMNNTYQVTSVAFNDTAECVLTGG 508 (2435)
Q Consensus 480 ~~~~~~~~~~~~v~sv~~sp~g~~l~sgs 508 (2435)
++.............++|+++|+++++-.
T Consensus 174 ~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 174 GKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 44322222333457899999999877644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.15 Score=66.98 Aligned_cols=142 Identities=13% Similarity=0.165 Sum_probs=89.1
Q ss_pred EecccCCcEEEEEECCC-CCEEEEEeCCCeEEEEecC---Cce---eeEEEeeCCCCCeeEEEEcc---CCCEEEEEeCC
Q psy4869 357 LLEGHGGEIFCSKYHPD-GQYIASSGYDRQIFIWSVY---GEC---ENIGVMSGHTGAVMDLKFST---DGCHIFTCSTD 426 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~---~~~---~~~~~l~~h~~~V~~l~~s~---dg~~L~s~s~D 426 (2435)
+++|-.+.|-.+.|-.. -..++ -.-|.+.|||+. ++. ..+.....-...+.-+.|.| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 45667777777777431 11122 233678899875 211 12222333445667778876 55566666678
Q ss_pred CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEE
Q psy4869 427 QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLT 506 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~s 506 (2435)
+.+++.++.+... ..+.+|..++.++++...|-..+.. ++|||..|+.
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~ 252 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAW 252 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEE
Confidence 8888877755432 4456799999888887776333321 6788888888
Q ss_pred EecCCeEEEEE-----CCCCcEEEEEecCCC
Q psy4869 507 GGIDNDIKMWD-----LRTNSVVQKLRGHSD 532 (2435)
Q Consensus 507 gs~dg~V~lwD-----~~s~~~v~~l~~h~~ 532 (2435)
+..||.++.|. .+..++++.++.|.+
T Consensus 253 a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 253 AISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred eecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 88888766554 445566667777763
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.8 Score=57.17 Aligned_cols=185 Identities=8% Similarity=0.099 Sum_probs=93.6
Q ss_pred CCCEEEEEECC------CcEEEEEcCCCeE--EEEEecCCcCEEEEEEcCCCCEEEEEECCC-----cEEEEEccCCcee
Q psy4869 1051 DSKLLAVSLLD------TTVKIFFLDTFKF--FISLYGHKLPVLSLDMSYDSTLIATGSGDR-----TVKVWGLDYGDCH 1117 (2435)
Q Consensus 1051 dg~~Lavg~~d------g~V~i~d~~~~~~--~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg-----~I~vWd~~t~~~~ 1117 (2435)
++.++++|+.+ ..+..||..+... +..+.........+ .-+|++.+.||.++ .+..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56677777643 3467788765432 22221111111222 23677777888764 3778888765432
Q ss_pred E--EEeccCCCEEEEEEccCCCEEEEEeCCC-----------------------cEEEEeCCCcceeEEEEEEEeecccc
Q psy4869 1118 K--SLLAHEDSVTGVTFVPKTHYFFTTSKDG-----------------------RVKQWDADNFERIVTLHFFISLYGHK 1172 (2435)
Q Consensus 1118 ~--~l~~h~~~V~~v~fsp~~~~l~s~s~Dg-----------------------~V~iwD~~~~~~~~~~~~~~~~~~h~ 1172 (2435)
. .+.........+.+ ++...+.|+.++ .+..||..+.+= ..+. ......
T Consensus 381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-~~v~---~m~~~r 454 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-ETLP---NFWTGT 454 (557)
T ss_pred ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-eecC---CCCccc
Confidence 2 22211112222222 577777777653 466787765421 1111 110111
Q ss_pred cCeEEEEEeCCCCEEEEEeCC------CcEEEEEccC-Cc--eeeEeeccCCCEEEEEEeeCCCEEEEEECCC--cEEEE
Q psy4869 1173 LPVLSLDMSYDSTLIATGSGD------RTVKVWGLDY-GD--CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG--RVKQW 1241 (2435)
Q Consensus 1173 ~~V~~l~~s~dg~~l~sgs~D------g~V~iwd~~t-~~--~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg--~I~vw 1241 (2435)
... +++ .-++...+.|+.+ ..|..||.++ .+ .+..+.........+.+ ++...+.||.|+ .+..|
T Consensus 455 ~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 455 IRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred ccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhc
Confidence 111 122 2256677777754 2467899887 44 22233222222222223 788888999888 66677
Q ss_pred ECCCCc
Q psy4869 1242 DADNFE 1247 (2435)
Q Consensus 1242 D~~~~~ 1247 (2435)
|..+.+
T Consensus 531 d~~~~~ 536 (557)
T PHA02713 531 NVYTYE 536 (557)
T ss_pred Cccccc
Confidence 776544
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.26 E-value=68 Score=41.50 Aligned_cols=194 Identities=19% Similarity=0.053 Sum_probs=110.9
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEEecC--CcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCC-CEEEE
Q psy4869 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGH--KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTGV 1130 (2435)
Q Consensus 1054 ~Lavg~~dg~V~i~d~~~~~~~~~l~~h--~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~-~V~~v 1130 (2435)
.++++..+|.|.-+|.++++.+.....- ...+..-.+..+|+ ++.++.++.++.+|..+|+.+........ .+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 4555566787888888777754322211 11122212222565 77789999999999989998888776551 11111
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEE--eecccccCeEEEEEeCCCCEEEEEeC--CCcEEEEEccCCce
Q psy4869 1131 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFI--SLYGHKLPVLSLDMSYDSTLIATGSG--DRTVKVWGLDYGDC 1206 (2435)
Q Consensus 1131 ~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~sgs~--Dg~V~iwd~~t~~~ 1206 (2435)
... ....++.++.++.+...|..++.......... .......++ .....++.+.. ++.+.-.|.++|..
T Consensus 149 ~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~------~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 149 PVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA------IASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred cEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce------eecceEEEecCCCcceEEEEEccCCcE
Confidence 111 23345555578999999999888877654211 111111111 12335555555 66788888888886
Q ss_pred eeEeeccCC----CE--E-EEEEee--CCCEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1207 HKSLLAHED----SV--T-GVTFVP--KTHYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1207 ~~~~~~h~~----~V--~-~i~~sp--d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
....+.+.. .+ . .+..-+ .+..++.++.++.+...|.++.+.+......
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 655321110 11 0 111000 1233567778888999999998888777664
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=2.3 Score=58.00 Aligned_cols=195 Identities=7% Similarity=-0.008 Sum_probs=99.1
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC-----eEEEEeCCCCcceE
Q psy4869 416 DGCHIFTCSTD------QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC-----TVKVWDPRKKNQAV 484 (2435)
Q Consensus 416 dg~~L~s~s~D------g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg-----~I~vwD~~~~~~~~ 484 (2435)
++..++.|+.+ ..+..||..++.+...-.-... ........-++.+.+.|+.++ .+..||+.+.....
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~-R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN-RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch-hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 56666777753 3477889877754322111111 111111122346677777654 47889988664333
Q ss_pred eec--C-cccEEEEEECCCCCEEEEEecCC-----------------------eEEEEECCCCcE--EEEEecCCCCEEE
Q psy4869 485 SMN--N-TYQVTSVAFNDTAECVLTGGIDN-----------------------DIKMWDLRTNSV--VQKLRGHSDTVTG 536 (2435)
Q Consensus 485 ~~~--~-~~~v~sv~~sp~g~~l~sgs~dg-----------------------~V~lwD~~s~~~--v~~l~~h~~~V~~ 536 (2435)
.-. . ......+. -+|+..+.|+.++ .|..||.++.+. +..+.........
T Consensus 382 ~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 382 LPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence 221 1 11122222 2577777777552 477899877543 2222211111111
Q ss_pred EEEcCCCCEEEEEECCC------cEEEEEcCC-CCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC--eEEE
Q psy4869 537 LSLSPDGSYILSNAMDN------TVRIWDIRP-YVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK--CVYI 607 (2435)
Q Consensus 537 i~~spdg~~las~s~Dg------~I~lWdl~~-~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg--~V~i 607 (2435)
+ .-+|+..+.|+.++ .+..||.+. .. -..+..+.... ....++ .-+|++.+.|+.|+ .+..
T Consensus 460 ~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r-----~~~~~~-~~~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 460 V--SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTESRL-----SALHTI-LHDNTIMMLHCYESYMLQDT 529 (557)
T ss_pred E--EECCEEEEEeCCCCCCccceeEEEecCCCCCC--eeEccccCccc-----ccceeE-EECCEEEEEeeecceeehhh
Confidence 2 22466667777542 356788763 11 11222222111 111111 22688889999888 7888
Q ss_pred EECCCCcEEEEecCCC
Q psy4869 608 WDTTTRRIAYKLPGHN 623 (2435)
Q Consensus 608 wd~~s~~~~~~l~~h~ 623 (2435)
||..+.+-...-..|.
T Consensus 530 yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 530 FNVYTYEWNHICHQHS 545 (557)
T ss_pred cCcccccccchhhhcC
Confidence 8888776544444444
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.07 E-value=9 Score=49.48 Aligned_cols=150 Identities=11% Similarity=0.122 Sum_probs=81.2
Q ss_pred ccEEEEEECCCCCEEEEEe-----------cCC-eEEEEECCC--Cc--EEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Q psy4869 490 YQVTSVAFNDTAECVLTGG-----------IDN-DIKMWDLRT--NS--VVQKLRGHSDTVTGLSLSPDGSYILSNAMDN 553 (2435)
Q Consensus 490 ~~v~sv~~sp~g~~l~sgs-----------~dg-~V~lwD~~s--~~--~v~~l~~h~~~V~~i~~spdg~~las~s~Dg 553 (2435)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-....+|++.++| .++ +..+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456889999999777642 223 787776543 33 233443334456889999999 444 44444
Q ss_pred cEEEEEcCCCC-CCCceEEEEeCcccc---cccCeEEEEEcCCCCEEEEecCC-------------------CeEEEEEC
Q psy4869 554 TVRIWDIRPYV-PGERCVKVMSGHQHN---FEKNLLRCAWSVSGLYVTAGSAD-------------------KCVYIWDT 610 (2435)
Q Consensus 554 ~I~lWdl~~~~-~~~~~v~~~~~h~~~---~~~~i~~v~~spdg~~Lasgs~D-------------------g~V~iwd~ 610 (2435)
.+++.|..... ...+....+.+-... .......+.|.|||++.++-+.. |.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 33444543211 111211122211110 11235678999999876654421 34555555
Q ss_pred CCCcEEEEecCCCCCeeEEEEcCCCCEEEEEE
Q psy4869 611 TTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 611 ~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs 642 (2435)
..++.. .+...-...+.++|+|+++++++-.
T Consensus 172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 544432 2222234467889998888776543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=90.05 E-value=5.4 Score=51.71 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=76.9
Q ss_pred CCEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCCC-CCceEEEEeC-cccccccCeEEEEEcCCCCEEEEecCCCeE
Q psy4869 532 DTVTGLSLSPD----GSYILSNAMDNTVRIWDIRPYVP-GERCVKVMSG-HQHNFEKNLLRCAWSVSGLYVTAGSADKCV 605 (2435)
Q Consensus 532 ~~V~~i~~spd----g~~las~s~Dg~I~lWdl~~~~~-~~~~v~~~~~-h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V 605 (2435)
..|.++.|.|- -..|++....+.|.+|.+..... ..+.+..... ....+.--...|.|+|....|+.-..+..-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 35899999994 34677778899999999873211 1222222111 111111223568999999988876655544
Q ss_pred EEEECC--CCcEEEEecCCCCCeeEEEEcCCCCEEEEE-ECCCcEEEecCC
Q psy4869 606 YIWDTT--TRRIAYKLPGHNGSVNDVQFHPKEPIIMSA-SSDKTIYLGESP 653 (2435)
Q Consensus 606 ~iwd~~--s~~~~~~l~~h~~~V~~l~fspd~~~Lasg-s~Dg~I~vWd~~ 653 (2435)
.+++++ +.+....+ .-.+-|.|.+|.+||+.|+.+ |..=.-++||-.
T Consensus 137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 455554 33444445 557889999999999966654 444567899865
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.89 Score=39.29 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=32.8
Q ss_pred EEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee
Q psy4869 920 RTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEIL 960 (2435)
Q Consensus 920 ~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v 960 (2435)
.....+..+.+++|+|...+||+|..+|.|.||.+ +++.+
T Consensus 6 ~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 6 GEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 33345667889999999999999999999999998 56543
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.59 E-value=54 Score=39.39 Aligned_cols=238 Identities=15% Similarity=0.074 Sum_probs=129.4
Q ss_pred eecCCC-CceEEEEecCCCcEEEEecC-CcEEEEeCCC---CceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEc
Q psy4869 880 HAQGHH-SEVRALAFSSDNLALVSACA-SQVKIWNRPS---LSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDI 954 (2435)
Q Consensus 880 ~l~GH~-~~V~~la~s~dg~~la~g~~-~~V~Iwd~~~---~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~ 954 (2435)
++-||- +.|.++.+..+..++..|.. .-.-||+... ...+..+....-+..+.|+ ++++.++..+..++|+|+
T Consensus 36 ~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDI 113 (370)
T COG5276 36 AYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVS--EEYVYVADWSSGLRIVDI 113 (370)
T ss_pred EEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEec--ccEEEEEcCCCceEEEec
Confidence 556777 56888888766555544443 3445666552 2334455556666667776 467777778888999999
Q ss_pred cCCc---eeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeee
Q psy4869 955 GAGE---ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1031 (2435)
Q Consensus 955 ~sg~---~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~ 1031 (2435)
.+.. ++..+... +--+++..+.+ .......|.-..+.|+..... . .+..
T Consensus 114 S~P~sP~~~~~lnt~-gyaygv~vsGn------------~aYVadlddgfLivdvsdpss--------P-------~lag 165 (370)
T COG5276 114 STPDSPTLIGFLNTD-GYAYGVYVSGN------------YAYVADLDDGFLIVDVSDPSS--------P-------QLAG 165 (370)
T ss_pred cCCCCcceeccccCC-ceEEEEEecCC------------EEEEeeccCcEEEEECCCCCC--------c-------eeee
Confidence 8755 33333221 12233333332 444445444455666643221 0 0010
Q ss_pred eeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC---CeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy4869 1032 LHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT---FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1108 (2435)
Q Consensus 1032 ~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~---~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~v 1108 (2435)
+.......-..++.| |++-.++..|+-+.|.|+.. -.++.... ....+.++..+++..+++. .+--+.+
T Consensus 166 ---rya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vv--y~egvli 237 (370)
T COG5276 166 ---RYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVV--YDEGVLI 237 (370)
T ss_pred ---eeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEE--cccceEE
Confidence 000111222344444 66777788899999999863 23333333 3336788887766555553 3334666
Q ss_pred EEccCCceeEEEec--cCC--CEEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q psy4869 1109 WGLDYGDCHKSLLA--HED--SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1157 (2435)
Q Consensus 1109 Wd~~t~~~~~~l~~--h~~--~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~ 1157 (2435)
-|....+....+-. ... .++.+.. .+++.+....+.-+.+-|+.+..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCC
Confidence 67665553333321 222 2222333 46777777777778888876643
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=89.59 E-value=2.3 Score=58.29 Aligned_cols=147 Identities=16% Similarity=0.067 Sum_probs=93.4
Q ss_pred CCCEEEEEEcCCCCEEEEEECC--CcEEEEEcCCCeEE-----EEEec------CCcCEEEEEEcCCC-CEEEEEECCCc
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLD--TTVKIFFLDTFKFF-----ISLYG------HKLPVLSLDMSYDS-TLIATGSGDRT 1105 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~d--g~V~i~d~~~~~~~-----~~l~~------h~~~V~sl~~spdg-~~L~Sgs~Dg~ 1105 (2435)
.-.+..+...+|+...++.... -.|..||+...... .-+.. ...-..++.|+|.- ...+.+..|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 4456677778888777666543 36788887643221 11221 22335677888853 34566788999
Q ss_pred EEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCC
Q psy4869 1106 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDST 1185 (2435)
Q Consensus 1106 I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 1185 (2435)
|++..+........-.......++++|+|.|++++.|-..|++..|...- +....++.... .....|.+++|-....
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~--~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPV--EENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCc--CCCcceeEEEEeccee
Confidence 99887754332222223455789999999999999999999999987543 22222221111 1257899999987666
Q ss_pred EEEE
Q psy4869 1186 LIAT 1189 (2435)
Q Consensus 1186 ~l~s 1189 (2435)
++++
T Consensus 257 flvv 260 (1405)
T KOG3630|consen 257 FLVV 260 (1405)
T ss_pred EEEE
Confidence 6654
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=88.78 E-value=25 Score=48.90 Aligned_cols=94 Identities=11% Similarity=0.191 Sum_probs=55.6
Q ss_pred CCCeeEEEEccCCCEEEEEeCCCeEEEEECC-CCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcce
Q psy4869 405 TGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE-KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQA 483 (2435)
Q Consensus 405 ~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~-tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~ 483 (2435)
.-.|..|..+++|++|+..|..|.+ |-.+. ..-....+++....+.| +.+.+. ...
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~C--------------------rt~~v~--~~~ 140 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINC--------------------RTVPVD--ERF 140 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeE--------------------EEEEec--hhh
Confidence 3568899999999999988876543 33332 11111122222222211 111111 111
Q ss_pred EeecCcccEEEEEECCC---CCEEEEEecCCeEEEEECCCC
Q psy4869 484 VSMNNTYQVTSVAFNDT---AECVLTGGIDNDIKMWDLRTN 521 (2435)
Q Consensus 484 ~~~~~~~~v~sv~~sp~---g~~l~sgs~dg~V~lwD~~s~ 521 (2435)
........|..+.|+|. +.+|++-..|+.+++||+...
T Consensus 141 ~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 141 FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 12233457889999996 589999999999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=88.76 E-value=14 Score=44.84 Aligned_cols=147 Identities=20% Similarity=0.166 Sum_probs=88.4
Q ss_pred CEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEe-CCCccee-E
Q psy4869 1084 PVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD-ADNFERI-V 1160 (2435)
Q Consensus 1084 ~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD-~~~~~~~-~ 1160 (2435)
.+.+.++++++..++... .++.-.+|-...+.....+. ....+..-.|++++...++...+...+++. ...+... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999998776655 23333333333333333332 223677889999987777767667777774 2222211 1
Q ss_pred EEEEEEeecccccCeEEEEEeCCCCEEEEEe---CCCcEEEEEcc---CC--c----eeeEeeccCCCEEEEEEeeCCCE
Q psy4869 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGS---GDRTVKVWGLD---YG--D----CHKSLLAHEDSVTGVTFVPKTHY 1228 (2435)
Q Consensus 1161 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs---~Dg~V~iwd~~---t~--~----~~~~~~~h~~~V~~i~~spd~~~ 1228 (2435)
.+. .......|..+.++|||..++.-. .++.|.+--+. .+ . .+.........+..+.|.+++.+
T Consensus 104 ~v~----~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 104 EVD----WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred Eec----ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 111 111112899999999999887765 35777776543 22 1 11122233568999999998887
Q ss_pred EEEEECC
Q psy4869 1229 FFTTSKD 1235 (2435)
Q Consensus 1229 lvsgs~D 1235 (2435)
++.+...
T Consensus 180 ~V~~~~~ 186 (253)
T PF10647_consen 180 VVLGRSA 186 (253)
T ss_pred EEEeCCC
Confidence 7666543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.68 E-value=81 Score=40.17 Aligned_cols=154 Identities=10% Similarity=-0.040 Sum_probs=85.6
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEE-ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL-YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l-~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~ 1118 (2435)
.+.+..+.+.+++.+++++. .|.+..-.-+.++....+ ..-...++++.+.++++.++. +..|.+++=..+.|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccc
Confidence 46788899999988887775 454433211222222222 233457899999999887665 456766533344443222
Q ss_pred EEec----cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCC
Q psy4869 1119 SLLA----HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDR 1194 (2435)
Q Consensus 1119 ~l~~----h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg 1194 (2435)
.... ....+..+.|.+++..++ ++.+|.+. .....++...... ....-....+.+.+..+++.++ .+..|
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~---~~~~~~~~~~~~~~~~~~~~~~-~G~~G 323 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDP---VGEEVPSNFYKIVFLDPEKGFV-LGQRG 323 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECC---cCCCCCcceEEEEEeCCCceEE-ECCCc
Confidence 2111 223578899998776544 45566554 3333333322221 0011224577787776665555 45667
Q ss_pred cEEEEEc
Q psy4869 1195 TVKVWGL 1201 (2435)
Q Consensus 1195 ~V~iwd~ 1201 (2435)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 7776653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=88.47 E-value=1.3 Score=38.33 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=30.9
Q ss_pred cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Q psy4869 487 NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV 523 (2435)
Q Consensus 487 ~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~ 523 (2435)
.....|.+++|+|..++||.|..+|.|.+|.+ +++.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 34557999999999999999999999999998 5543
|
|
| >PF05109 Herpes_BLLF1: Herpes virus major outer envelope glycoprotein (BLLF1); InterPro: IPR007796 This family consists of the viral late glycoprotein BLLF1, also termed gp350/220 | Back alignment and domain information |
|---|
Probab=87.25 E-value=0.24 Score=61.21 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=4.9
Q ss_pred ceeeEeeecCCCCCcce
Q psy4869 1866 NYSEIIFTTNNNSESTV 1882 (2435)
Q Consensus 1866 ~~~~~~~~~~~~~~~~~ 1882 (2435)
-|+-|+.-+..+.++..
T Consensus 417 ~~kv~f~kapdst~t~~ 433 (830)
T PF05109_consen 417 THKVIFSKAPDSTTTSP 433 (830)
T ss_dssp EEEEEE-------TTTT
T ss_pred eeEEEEecCCCcccccc
Confidence 35666665544443333
|
It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. The binding of the viral major glycoprotein BLLF1 to the CD21 cellular receptor is thought to play an essential role during infection of B lymphocytes by the Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) []. ; GO: 0019058 viral infectious cycle, 0019031 viral envelope; PDB: 2H6O_A. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=86.85 E-value=0.1 Score=64.76 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=97.0
Q ss_pred eCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEc-CCeEEEEECCCCCe
Q psy4869 32 KNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYT-NGSLKTFSLDTTDV 109 (2435)
Q Consensus 32 ~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~-~G~i~i~d~~~~~~ 109 (2435)
|-++|.-|+.+ .+.-|.+||-.... ......+|. ..+|+|+-++..+++..+ .|.+.+||+.+...
T Consensus 42 w~~e~~nlavaca~tiv~~YD~agq~---------~le~n~tg~---aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDKAGQV---------ILELNPTGK---ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred EecCCCceehhhhhhHHHhhhhhcce---------ecccCCchh---HhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 34444446655 88889999954221 112222333 337899999877766544 67899999987755
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEE
Q psy4869 110 ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKI 187 (2435)
Q Consensus 110 ~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~i 187 (2435)
.+.-.|-+..-.-+.|++.+..++.|-..|.++|++....+.+.+...|..++++++|.+. .+.+.++.|..+.+
T Consensus 110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE---d~vil~dcd~~L~v 184 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE---DYVILCDCDNTLSV 184 (615)
T ss_pred HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc---ceeeecCcHHHHHH
Confidence 4432232222233889999899999999999999999888877776669999999999643 35677777766544
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.58 E-value=49 Score=39.38 Aligned_cols=219 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred cccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCce
Q psy4869 1037 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1116 (2435)
Q Consensus 1037 ~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~ 1116 (2435)
.........++-++||..-+.+...+.|--.|-.+++....--+....-..|...|||..-++-+.. -|.-.|-++.+.
T Consensus 58 vp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 58 VPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred cCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce
Q ss_pred eE---EEeccCCCEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCC
Q psy4869 1117 HK---SLLAHEDSVTGVTFVPKTHYFFTTSK---------DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS 1184 (2435)
Q Consensus 1117 ~~---~l~~h~~~V~~v~fsp~~~~l~s~s~---------Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 1184 (2435)
.. ..+..........|.+.|++.+++.. .+.|++|+...+ ..-+.|+..|+|
T Consensus 137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------------~gpyGi~atpdG 200 (353)
T COG4257 137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG----------------GGPYGICATPDG 200 (353)
T ss_pred EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC----------------CCCcceEECCCC
Q ss_pred CEEEEEeCCCcEEEEEccCCc--eeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccC
Q psy4869 1185 TLIATGSGDRTVKVWGLDYGD--CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPL 1262 (2435)
Q Consensus 1185 ~~l~sgs~Dg~V~iwd~~t~~--~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~ 1262 (2435)
..-++.-.++.|-..|..++. .+-.-......-+.+.-+|.++.-++....+.++.+|..... ..+..++...-.+.
T Consensus 201 svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpy 279 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPY 279 (353)
T ss_pred cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcc
Q ss_pred ceEEEEEECCCeEEEE
Q psy4869 1263 QIQVVTGGGDKSVKLW 1278 (2435)
Q Consensus 1263 ~~~lv~g~~d~~v~iw 1278 (2435)
..++ |+.=++|
T Consensus 280 s~rV-----D~~grVW 290 (353)
T COG4257 280 SMRV-----DRHGRVW 290 (353)
T ss_pred eeee-----ccCCcEE
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=85.84 E-value=95 Score=37.97 Aligned_cols=239 Identities=11% Similarity=0.109 Sum_probs=123.0
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEecC-----Cce-eeEEEeeC-----CCCCeeEEEEccCCC------------EEE
Q psy4869 365 IFCSKYHPDGQYIASSGYDRQIFIWSVY-----GEC-ENIGVMSG-----HTGAVMDLKFSTDGC------------HIF 421 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs~Dg~I~iwd~~-----~~~-~~~~~l~~-----h~~~V~~l~~s~dg~------------~L~ 421 (2435)
-..|+|+|.+.+-++....+...+||.. ... .....+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3568999999988888888999999986 211 11222221 234677888874322 367
Q ss_pred EEeCCCeEEEEECCCCce-----EEEEecc-Ccccc-ccCcc--cCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccE
Q psy4869 422 TCSTDQTLAVWDLEKGQR-----IKKMKGH-STFVN-SCDPV--RRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQV 492 (2435)
Q Consensus 422 s~s~Dg~I~vwd~~tg~~-----v~~l~~h-~~~v~-sv~~~--~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v 492 (2435)
.+++||+|.-|...-+.. +..+... ...|. .+++. ..+..+.++--..++|.+||-.-......-....+-
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 789999999998532211 1122211 12222 23322 234556666566788888875433221100000000
Q ss_pred EEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEE
Q psy4869 493 TSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572 (2435)
Q Consensus 493 ~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~ 572 (2435)
.=.-|.|-+ . -.-.+.|+| +-..-.++++.=+.+-.-|.|-+||+. ++.++.
T Consensus 185 iPagyAPFn-I---qnig~~lyV-------------------tYA~qd~~~~d~v~G~G~G~VdvFd~~-----G~l~~r 236 (336)
T TIGR03118 185 LPAGYAPFN-V---QNLGGTLYV-------------------TYAQQDADRNDEVAGAGLGYVNVFTLN-----GQLLRR 236 (336)
T ss_pred CCCCCCCcc-e---EEECCeEEE-------------------EEEecCCcccccccCCCcceEEEEcCC-----CcEEEE
Confidence 000111211 0 001122221 111111222222233344666777764 455554
Q ss_pred EeCcccccccCeEEEEEcC------CCCEEEEecCCCeEEEEECCCCcEEEEecCCC------CCeeEEEEcC
Q psy4869 573 MSGHQHNFEKNLLRCAWSV------SGLYVTAGSADKCVYIWDTTTRRIAYKLPGHN------GSVNDVQFHP 633 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~sp------dg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~------~~V~~l~fsp 633 (2435)
+..... -+....++..| .|.+|+---.||+|..||..+++.+..+.... ..++.|+|..
T Consensus 237 ~as~g~--LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 237 VASSGR--LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eccCCc--ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 432111 11233444433 56677666679999999999999888776543 3457788865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.04 E-value=12 Score=51.11 Aligned_cols=146 Identities=10% Similarity=0.013 Sum_probs=69.8
Q ss_pred CCCCEEEEEECC------CcEEEEEcCCCeEEEE--EecCCcCEEEEEEcCCCCEEEEEECCC-----cEEEEEccCCce
Q psy4869 1050 PDSKLLAVSLLD------TTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDSTLIATGSGDR-----TVKVWGLDYGDC 1116 (2435)
Q Consensus 1050 pdg~~Lavg~~d------g~V~i~d~~~~~~~~~--l~~h~~~V~sl~~spdg~~L~Sgs~Dg-----~I~vWd~~t~~~ 1116 (2435)
.++.++++|+.+ ..+..||..+.+.... +.........+. -++++.+.||.++ .+..||..+.+-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 445666677643 2467788766543221 111111122222 2567777787653 467788766543
Q ss_pred eEE--EeccCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEE
Q psy4869 1117 HKS--LLAHEDSVTGVTFVPKTHYFFTTSKD------GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIA 1188 (2435)
Q Consensus 1117 ~~~--l~~h~~~V~~v~fsp~~~~l~s~s~D------g~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~ 1188 (2435)
... +....... +++. -+++.++.|+.+ +.+..||..+..= .... ........ .+++. .++..++
T Consensus 371 ~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~---~~p~~r~~-~~~~~-~~~~iyv 442 (534)
T PHA03098 371 REEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKW-SKGS---PLPISHYG-GCAIY-HDGKIYV 442 (534)
T ss_pred eeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCee-eecC---CCCccccC-ceEEE-ECCEEEE
Confidence 221 11111111 1222 256666777632 4578888775421 1111 11111111 12222 2566666
Q ss_pred EEeCC--------CcEEEEEccCCc
Q psy4869 1189 TGSGD--------RTVKVWGLDYGD 1205 (2435)
Q Consensus 1189 sgs~D--------g~V~iwd~~t~~ 1205 (2435)
.|+.+ ..+.+||..+++
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCc
Confidence 66643 238888988765
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=84.69 E-value=9.7 Score=51.77 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=75.7
Q ss_pred eEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEc--CCCCEEEEEECCCcEEEE
Q psy4869 990 IQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS--PDSKLLAVSLLDTTVKIF 1067 (2435)
Q Consensus 990 ~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s--pdg~~Lavg~~dg~V~i~ 1067 (2435)
..|+.|..||.|.+|..+.....-+. ...+...............+.....++.++++ ...++||+++....|.||
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~--~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIER--FSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHh--hccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 58889999999999987432110000 00000000001222333455667799999999 888999999888889888
Q ss_pred EcCCC--eEEEE-EecCCcCEEEEEEcCCC---C---EEEEEECCCcEEEEEcc
Q psy4869 1068 FLDTF--KFFIS-LYGHKLPVLSLDMSYDS---T---LIATGSGDRTVKVWGLD 1112 (2435)
Q Consensus 1068 d~~~~--~~~~~-l~~h~~~V~sl~~spdg---~---~L~Sgs~Dg~I~vWd~~ 1112 (2435)
-.... +.... -..|...|-+|+|-++. . .|++++-.|.+.+|++.
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 65431 11110 11255568888997643 2 78889999999998883
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.46 E-value=19 Score=40.91 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=41.0
Q ss_pred CCCEEEEEe--CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcc
Q psy4869 1183 DSTLIATGS--GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNV 1258 (2435)
Q Consensus 1183 dg~~l~sgs--~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~ 1258 (2435)
+|.++.+.+ ....|++||+.+|+.+....-....+..=-...-++.+..-. .||.-..+|.++.+.+..+......
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 444555544 245699999999987655432212221111111122333322 5677777888877777666555443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=84.32 E-value=23 Score=48.43 Aligned_cols=164 Identities=11% Similarity=0.091 Sum_probs=102.8
Q ss_pred CCCceEEEEEeCCCCcEEEEecCCcEEEEEcCcccccccc----C-Cccc--------cceecCCCccceEEE--eecCC
Q psy4869 22 PNCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLL----P-GEKH--------EALLLPGEKHEVCQL--SPNHD 86 (2435)
Q Consensus 22 ~~~~v~~~~~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~----~-~~~~--------~~~~~~g~~~~v~~~--~~~~d 86 (2435)
-+.|...+.. +++|..+..+.|.||+++........ . ..+. .....+ .-+.|+-| ..--+
T Consensus 39 fKNNLtalsq----~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~ 113 (717)
T PF08728_consen 39 FKNNLTALSQ----RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGG 113 (717)
T ss_pred cccceeEEec----CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCC
Confidence 4667776632 78899999999999998765432210 0 0000 010111 11223332 22344
Q ss_pred CCeEEEEEcCCeEEEEECCCC--------------------CeEEEecCCCCCEEEEEEc--CCCCEEEEEeCCCCEEEE
Q psy4869 87 SSQLAVAYTNGSLKTFSLDTT--------------------DVISTFTGHKSAITVIQYD--PLGHRLATGSKDTDIVLW 144 (2435)
Q Consensus 87 ~~~lav~~~~G~i~i~d~~~~--------------------~~~~~l~gH~~~V~~l~f~--p~g~~laSgs~Dg~I~iW 144 (2435)
...|+++.+||.|.+|..++- +|-..+. -...++.++++ ...++||.++--..|-||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 568999999999999976210 0111222 23578999998 777888998888889888
Q ss_pred EccCC--eeEE-EEecCCCcEEEEEEeecC---CC-cEEEEEeCCCcEEEEecc
Q psy4869 145 DVVAE--CGLH-RLSGHKGVITDIRFMSQP---GH-HFVVSSAKDTFVKIWDAD 191 (2435)
Q Consensus 145 d~~~~--~~~~-~l~gH~~~V~~v~~~~~~---~~-~~l~S~s~Dg~I~iWd~~ 191 (2435)
-.... +... .-..|...|-+|.|.++. .+ ..|++++-.|.+.+|++.
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 76542 2111 112467789999998754 12 378889999999999873
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.96 E-value=36 Score=38.87 Aligned_cols=175 Identities=13% Similarity=0.087 Sum_probs=100.5
Q ss_pred CCEEEEEEC--CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEEccCCceeEEEeccCCCEE
Q psy4869 1052 SKLLAVSLL--DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIA-TGSGDRTVKVWGLDYGDCHKSLLAHEDSVT 1128 (2435)
Q Consensus 1052 g~~Lavg~~--dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~-Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~ 1128 (2435)
|.++...+. ...|++|++.+++.+.+..-....+..=-...-++.+. -.=.+|.-.++|.++-+++..+. ..+.-+
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcce
Confidence 444443332 36799999999888776542211111111111122222 23457788889988887776664 233334
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecc-cccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcee
Q psy4869 1129 GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYG-HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1207 (2435)
Q Consensus 1129 ~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~-h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~ 1207 (2435)
.++. ++..|+.++....+++-|..++.....+.. +..+ .-..++.+.|- +|...+-.-.+..|...|.++|+.+
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~V--T~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQV--TDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHHHhhhcceEEE--EECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEE
Confidence 5554 455577777777888888888776665541 1111 12234455554 5555555555566777777777765
Q ss_pred eEee------------ccCCCEEEEEEeeCC-CEEEEE
Q psy4869 1208 KSLL------------AHEDSVTGVTFVPKT-HYFFTT 1232 (2435)
Q Consensus 1208 ~~~~------------~h~~~V~~i~~spd~-~~lvsg 1232 (2435)
..+. .|.+-.+.|++.|+. +++++|
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 4442 345567889999876 445544
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=83.75 E-value=21 Score=48.39 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=75.0
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe-ccCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCC------
Q psy4869 1084 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVP--KTHYFFTTSKDGRVKQWDAD------ 1154 (2435)
Q Consensus 1084 ~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~-~h~~~V~~v~fsp--~~~~l~s~s~Dg~V~iwD~~------ 1154 (2435)
...-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|.. +++.+++.+..+.|.+|--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444444555655555556689999998886443332 4577899999974 88899999999999998542
Q ss_pred CcceeEEEEEEEeeccc-ccCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q psy4869 1155 NFERIVTLHFFISLYGH-KLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202 (2435)
Q Consensus 1155 ~~~~~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~ 1202 (2435)
.......++.+. ...+ ..+|.+..|.++|..++.. ++.+.|+|-.
T Consensus 111 ~~p~w~~i~~i~-i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKID-ISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEE-eecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 111111222111 1233 3689999999999766654 3568888754
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.47 E-value=18 Score=49.33 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=88.9
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC-----CeEEEEeCCCCcceE
Q psy4869 416 DGCHIFTCSTDQ------TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD-----CTVKVWDPRKKNQAV 484 (2435)
Q Consensus 416 dg~~L~s~s~Dg------~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D-----g~I~vwD~~~~~~~~ 484 (2435)
++..++.|+.++ .+..||..+++....-....... .......++.+++.|+.+ ..+..||+.+.+...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~-~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRK-NPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccc-cceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 455666666542 57788887776533211111111 111111244677777765 346778877654332
Q ss_pred eec--CcccEEEEEECCCCCEEEEEecC------CeEEEEECCCCcEEE--EEecCCCCEEEEEEcCCCCEEEEEECCC-
Q psy4869 485 SMN--NTYQVTSVAFNDTAECVLTGGID------NDIKMWDLRTNSVVQ--KLRGHSDTVTGLSLSPDGSYILSNAMDN- 553 (2435)
Q Consensus 485 ~~~--~~~~v~sv~~sp~g~~l~sgs~d------g~V~lwD~~s~~~v~--~l~~h~~~V~~i~~spdg~~las~s~Dg- 553 (2435)
... ....-.+++ .-+++..+.|+.+ ..+..||..+++... .+......... ..-++..++.|+.++
T Consensus 373 ~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 373 EPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA--IYHDGKIYVIGGISYI 449 (534)
T ss_pred CCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE--EEECCEEEEECCccCC
Confidence 211 111111222 2356667777632 458899988754322 11111111111 223566666666432
Q ss_pred -------cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----CeEEEEECCCCc
Q psy4869 554 -------TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----KCVYIWDTTTRR 614 (2435)
Q Consensus 554 -------~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----g~V~iwd~~s~~ 614 (2435)
.+.+||.....- ..+..+.... .....+. .++++++.|+.+ +.|.+||..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~W--~~~~~~~~~r----~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKW--TELSSLNFPR----INASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCce--eeCCCCCccc----ccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 377888764211 1111111000 0111122 267777777754 468888887654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=83.33 E-value=15 Score=49.56 Aligned_cols=114 Identities=13% Similarity=0.239 Sum_probs=77.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEe-cCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEecc-----
Q psy4869 118 SAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLS-GHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDAD----- 191 (2435)
Q Consensus 118 ~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~----- 191 (2435)
....-+.-+..+...+.-+.-..+.|||.........-. ...+.|.++.|...++++.+++.|..+.|.++-..
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344445555544444444445569999998877544322 55789999999988899999999999999999642
Q ss_pred -CCc---ccccc--cccc-ceEEEEEEEeCCCeEEEeeCCCcEEEEEcC
Q psy4869 192 -TGD---CFKTM--AAHL-TEVWGVCVMREDSYLISGSNDAELKVWNVR 233 (2435)
Q Consensus 192 -tg~---~~~~~--~~h~-~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~ 233 (2435)
.+. .++.+ ..|+ .+|.+.+|.++|..++.+ ++.+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 111 22322 3343 578899999888766544 3678888643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF05109 Herpes_BLLF1: Herpes virus major outer envelope glycoprotein (BLLF1); InterPro: IPR007796 This family consists of the viral late glycoprotein BLLF1, also termed gp350/220 | Back alignment and domain information |
|---|
Probab=83.31 E-value=0.49 Score=58.67 Aligned_cols=6 Identities=33% Similarity=1.005 Sum_probs=0.0
Q ss_pred ccCccC
Q psy4869 2179 DAREEW 2184 (2435)
Q Consensus 2179 Dwr~~~ 2184 (2435)
-+|..|
T Consensus 750 ~lrprw 755 (830)
T PF05109_consen 750 KLRPRW 755 (830)
T ss_dssp ------
T ss_pred cccccc
Confidence 344444
|
It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. The binding of the viral major glycoprotein BLLF1 to the CD21 cellular receptor is thought to play an essential role during infection of B lymphocytes by the Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) []. ; GO: 0019058 viral infectious cycle, 0019031 viral envelope; PDB: 2H6O_A. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.18 E-value=10 Score=47.96 Aligned_cols=143 Identities=19% Similarity=0.279 Sum_probs=93.8
Q ss_pred cCCCEEEE-EeCCCeEEEEECCCCceEEEEeccCccccccCcccCC-------CeEEEEEeCCCeEEEEeCCC-CcceEe
Q psy4869 415 TDGCHIFT-CSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRG-------QLLIASGSDDCTVKVWDPRK-KNQAVS 485 (2435)
Q Consensus 415 ~dg~~L~s-~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~-------~~llasgs~Dg~I~vwD~~~-~~~~~~ 485 (2435)
.|..+|+. +.....++--|++.|+.+....-|...+ +.+.|.. ...++ |-.+..|.-.|++- +..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 35555554 4556678888999999999998887753 4444432 12233 44455566667663 333333
Q ss_pred ecCcccEEEEEECC----CCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 486 MNNTYQVTSVAFND----TAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 486 ~~~~~~v~sv~~sp----~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
...+..++.-.|+. ...++|+|+..|.|++||--..+....+.+-...|-.|....+|+++++.+ ..++.+-|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 33222222222322 345899999999999999766555556677788999999999999988655 4567777876
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.93 E-value=16 Score=46.19 Aligned_cols=147 Identities=18% Similarity=0.260 Sum_probs=95.6
Q ss_pred CCCCEEE-EEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCC-------EEEEEECCCcEEEEEcCCCCCCCce-
Q psy4869 499 DTAECVL-TGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGS-------YILSNAMDNTVRIWDIRPYVPGERC- 569 (2435)
Q Consensus 499 p~g~~l~-sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~-------~las~s~Dg~I~lWdl~~~~~~~~~- 569 (2435)
.+..+|+ .|+....++--|++.|+.+..+..|.+. -|.|.|+.+ .-+.|-.|..|.-.|.|... .+.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g--NKi~ 552 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG--NKIK 552 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccC--Ccee
Confidence 3444444 4566678888999999999999988776 478888532 23445566666666776422 111
Q ss_pred EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEE
Q psy4869 570 VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649 (2435)
Q Consensus 570 v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~v 649 (2435)
+........ ..-.++.......|+|++|..|.|++||.-.-+....+++....|-.+....+|++|++.+.. .|.+
T Consensus 553 v~esKdY~t---Kn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL 628 (776)
T COG5167 553 VVESKDYKT---KNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLL 628 (776)
T ss_pred eeeehhccc---cccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEE
Confidence 111211111 111222333355799999999999999976555566678888999999999999977665543 4555
Q ss_pred ecCC
Q psy4869 650 GESP 653 (2435)
Q Consensus 650 Wd~~ 653 (2435)
-|++
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 5554
|
|
| >COG3889 Predicted solute binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.26 E-value=0.86 Score=60.05 Aligned_cols=17 Identities=0% Similarity=0.077 Sum_probs=11.3
Q ss_pred ceEEEEEeeCCCEEEEE
Q psy4869 1400 SVTGVTFVPKTHYFFTT 1416 (2435)
Q Consensus 1400 ~V~~laf~P~~~~laSg 1416 (2435)
|-+++.|+|.++.++..
T Consensus 463 P~nAi~~ns~~k~w~~~ 479 (872)
T COG3889 463 PQNAIVWNSTGKKWTPV 479 (872)
T ss_pred cccceEEcCCCceeeec
Confidence 44667777777766653
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=82.09 E-value=84 Score=40.15 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=33.8
Q ss_pred CCeEEEEEeCC-----CeEEEEeCCCCcceEeec------Cccc-EEEEEECCCCCEEEEEecC-----------CeEEE
Q psy4869 459 GQLLIASGSDD-----CTVKVWDPRKKNQAVSMN------NTYQ-VTSVAFNDTAECVLTGGID-----------NDIKM 515 (2435)
Q Consensus 459 ~~~llasgs~D-----g~I~vwD~~~~~~~~~~~------~~~~-v~sv~~sp~g~~l~sgs~d-----------g~V~l 515 (2435)
+..+++.|+.+ ..+.+||+.+.+...... .... -.+++ .-++++.+.|+.+ ..|.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 34666777653 247778887654332111 1111 11222 2355666677643 25788
Q ss_pred EECCCCcE
Q psy4869 516 WDLRTNSV 523 (2435)
Q Consensus 516 wD~~s~~~ 523 (2435)
||..+.+-
T Consensus 164 yd~~~~~W 171 (341)
T PLN02153 164 YNIADGKW 171 (341)
T ss_pred EECCCCeE
Confidence 99887643
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=82.07 E-value=16 Score=50.81 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=62.8
Q ss_pred cccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceE
Q psy4869 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1391 (2435)
Q Consensus 1312 ~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~ 1391 (2435)
...+.|..+.++|+|+++|+.+..|-+.+.=....-....+.+....+.|-.+.-+..+ +
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~--------------------~ 141 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF--------------------F 141 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhh--------------------c
Confidence 45678999999999999999887765544332221111223323333333222211111 1
Q ss_pred EEecccccceEEEEEeeC---CCEEEEEeCCCcEEEEECCCceeEE
Q psy4869 1392 KSLLAHEDSVTGVTFVPK---THYFFTTSKDGRVKQWDADNFERIV 1434 (2435)
Q Consensus 1392 ~~~~~h~~~V~~laf~P~---~~~laSgg~Dg~V~lWd~~~~~~l~ 1434 (2435)
...+...|..+.|||. +.+|+.=..|+.|++||+...+...
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCe
Confidence 1134457999999996 4789999999999999998644433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=81.48 E-value=1.4e+02 Score=36.60 Aligned_cols=241 Identities=15% Similarity=0.126 Sum_probs=125.6
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcc------CC-ceeeEeec-----cCCCEEEEEEeeCCC------------EE
Q psy4869 1174 PVLSLDMSYDSTLIATGSGDRTVKVWGLD------YG-DCHKSLLA-----HEDSVTGVTFVPKTH------------YF 1229 (2435)
Q Consensus 1174 ~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~------t~-~~~~~~~~-----h~~~V~~i~~spd~~------------~l 1229 (2435)
--+.|+++|.+.+-++....+...+||.. .. .++-.+.. .....+.+.|..... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35678999988777776677889999986 12 22223321 234577777764322 26
Q ss_pred EEEECCCcEEEEECCCCce-----EEEEeeC--Ccccc-------cCceEEE-EEECCCeEEEEEccccccccccccccc
Q psy4869 1230 FTTSKDGRVKQWDADNFER-----IVTLHFN--PNVYL-------PLQIQVV-TGGGDKSVKLWQLELVSVNREADEETK 1294 (2435)
Q Consensus 1230 vsgs~Dg~I~vwD~~~~~~-----v~~~~~~--~~~~~-------~~~~~lv-~g~~d~~v~iwdl~~~~~~~~~~~~~~ 1294 (2435)
+.+++||+|.-|...-... ...+.-. ...|. .....|. +--..++|.+||-.-........-...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788999999998532221 1112111 11111 0111222 222346666665432211100000000
Q ss_pred ccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEec--CCCCCeEEEEEec------
Q psy4869 1295 DVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY--GHKLPVLSLDMSY------ 1366 (2435)
Q Consensus 1295 ~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~--~h~~~V~~la~sp------ 1366 (2435)
..+..+.|+......-.-.|.=..-.++++.=+.|-.-|.|.+||.+ +++++.+. +.-.....|+..|
T Consensus 184 ---~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 184 ---ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred ---CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 00111222222111111112222233444444445566889999864 55666553 3334455666655
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEeccccc------ceEEEEEeeC------CCEEEEEeC
Q psy4869 1367 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED------SVTGVTFVPK------THYFFTTSK 1418 (2435)
Q Consensus 1367 dg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~------~V~~laf~P~------~~~laSgg~ 1418 (2435)
.|.+|+-=-.||+|..||..+|+.+..+....+ ...+|+|... ..++.++|-
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp 323 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGP 323 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCC
Confidence 456666655699999999999988877664332 5678888762 345555553
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=80.76 E-value=99 Score=39.59 Aligned_cols=184 Identities=16% Similarity=0.259 Sum_probs=109.1
Q ss_pred CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEcc----CCCE--EEEEeC-C---CeEEEEECC--CCceE
Q psy4869 373 DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST----DGCH--IFTCST-D---QTLAVWDLE--KGQRI 440 (2435)
Q Consensus 373 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~----dg~~--L~s~s~-D---g~I~vwd~~--tg~~v 440 (2435)
...+|+....++-+.+||+.+.... .+. .+..+.+..-. +|+. |+.++. + ..|++|.+. ++. +
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq--~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQ--SLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEE--EE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEE--eec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 4557777788899999999875432 222 24444443321 3433 455543 2 479999775 333 3
Q ss_pred EEEecc-------CccccccCcc--c-CCCeEEEEEeCCCeEEEEeCC---CC----cceEeecCcccEEEEEECCCCCE
Q psy4869 441 KKMKGH-------STFVNSCDPV--R-RGQLLIASGSDDCTVKVWDPR---KK----NQAVSMNNTYQVTSVAFNDTAEC 503 (2435)
Q Consensus 441 ~~l~~h-------~~~v~sv~~~--~-~~~~llasgs~Dg~I~vwD~~---~~----~~~~~~~~~~~v~sv~~sp~g~~ 503 (2435)
..+... ...+..++.. + .+..+++....+|.+.-|.+. .+ +.+..+.....+..|..+....+
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR 221 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence 333221 1123344442 2 355677778889988777764 23 24556667778999999999999
Q ss_pred EEEEecCCeEEEEECCC-----CcEEEEEec--CCCCEEEEEEcC--CCC-EEEEEE-CCCcEEEEEcC
Q psy4869 504 VLTGGIDNDIKMWDLRT-----NSVVQKLRG--HSDTVTGLSLSP--DGS-YILSNA-MDNTVRIWDIR 561 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s-----~~~v~~l~~--h~~~V~~i~~sp--dg~-~las~s-~Dg~I~lWdl~ 561 (2435)
|+.|-++.-|.-|+.+- ++.+....+ ....|-.|++-. +|+ +|+.++ .+++..|||.+
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 99999999999998862 233333322 456788888753 443 555544 58899999976
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2435 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-49 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-43 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-28 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-39 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-20 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-18 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-12 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-11 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-39 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-20 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-18 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-13 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-12 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-39 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 9e-21 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 8e-19 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-13 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-12 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-39 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-20 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-17 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-13 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 6e-12 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-39 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-20 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-18 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-13 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-12 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-39 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-20 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-17 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-13 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 6e-12 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-39 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-20 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-18 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-13 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-12 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-39 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-20 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-18 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-13 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-12 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-39 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-20 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 6e-18 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-13 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 6e-12 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-39 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-20 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-18 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-13 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-12 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-39 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-20 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-18 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-13 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-12 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-39 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-20 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-18 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 4e-13 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-12 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-39 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-20 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-18 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-13 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-12 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-39 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-20 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-18 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-13 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-12 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-39 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-20 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-18 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 4e-13 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 6e-12 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-39 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-20 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 5e-18 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 6e-13 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-12 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 7e-39 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-20 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-18 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-12 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-11 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 8e-25 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 5e-22 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 4e-20 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-17 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-21 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-12 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-21 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 6e-21 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 6e-05 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-20 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 6e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 9e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-20 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 7e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 8e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-20 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-13 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 8e-11 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 7e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 2e-20 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-12 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 5e-07 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-20 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-13 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 8e-11 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 7e-08 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-20 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-13 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-10 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 9e-08 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-20 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-13 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-11 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 7e-08 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 4e-20 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 3e-13 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-10 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 8e-08 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-19 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-17 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-12 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-19 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 6e-19 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 8e-12 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-05 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 6e-18 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-12 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 3e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-17 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 4e-16 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 6e-10 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-06 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-17 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 6e-12 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-09 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 8e-16 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 9e-11 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-04 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 4e-15 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-14 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 9e-12 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 4e-09 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 4e-15 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-14 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-11 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 6e-09 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 4e-15 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-14 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 9e-12 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 4e-09 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 4e-15 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-14 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-11 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 6e-09 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 4e-15 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-14 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-11 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 6e-09 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-14 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-10 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 2e-09 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-09 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-14 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-10 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-09 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 3e-09 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 4e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 6e-14 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 2e-11 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 1e-09 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 7e-14 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-09 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-08 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 8e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 6e-12 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 6e-10 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 8e-14 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 6e-12 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 6e-10 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-13 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-09 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 3e-08 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-13 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 2e-11 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-09 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-13 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 5e-13 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-09 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 5e-08 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 2e-12 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 1e-06 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-12 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-11 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-08 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 9e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 3e-12 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 4e-11 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-08 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-06 | ||
| 1pbh_A | 317 | Crystal Structure Of Human Recombinant Procathepsin | 5e-12 | ||
| 1pbh_A | 317 | Crystal Structure Of Human Recombinant Procathepsin | 8e-09 | ||
| 1cpj_A | 260 | Crystal Structures Of Recombinant Rat Cathepsin B A | 5e-12 | ||
| 1cpj_A | 260 | Crystal Structures Of Recombinant Rat Cathepsin B A | 7e-09 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 6e-12 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 8e-11 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-08 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-06 | ||
| 1cte_A | 254 | Crystal Structures Of Recombinant Rat Cathepsin B A | 7e-12 | ||
| 1cte_A | 254 | Crystal Structures Of Recombinant Rat Cathepsin B A | 7e-09 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 8e-12 | ||
| 3qsd_A | 254 | Structure Of Cathepsin B1 From Schistosoma Mansoni | 1e-11 | ||
| 3qsd_A | 254 | Structure Of Cathepsin B1 From Schistosoma Mansoni | 1e-10 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-11 | ||
| 3ai8_B | 256 | Cathepsin B In Complex With The Nitroxoline Length | 2e-11 | ||
| 3ai8_B | 256 | Cathepsin B In Complex With The Nitroxoline Length | 1e-08 | ||
| 3k9m_A | 254 | Cathepsin B In Complex With Stefin A Length = 254 | 2e-11 | ||
| 3k9m_A | 254 | Cathepsin B In Complex With Stefin A Length = 254 | 1e-08 | ||
| 1gmy_A | 261 | Cathepsin B Complexed With Dipeptidyl Nitrile Inhib | 2e-11 | ||
| 1gmy_A | 261 | Cathepsin B Complexed With Dipeptidyl Nitrile Inhib | 1e-08 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 3e-11 | ||
| 1mir_A | 322 | Rat Procathepsin B Length = 322 | 3e-11 | ||
| 1mir_A | 322 | Rat Procathepsin B Length = 322 | 6e-09 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 5e-11 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 6e-11 | ||
| 3cbj_A | 266 | Chagasin-cathepsin B Complex Length = 266 | 1e-10 | ||
| 3cbj_A | 266 | Chagasin-cathepsin B Complex Length = 266 | 9e-09 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-10 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 8e-10 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 9e-10 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-09 | ||
| 1qdq_A | 253 | X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 | 1e-09 | ||
| 1qdq_A | 253 | X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 | 2e-08 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 1e-09 | ||
| 1ito_A | 256 | Crystal Structure Analysis Of Bovine Spleen Catheps | 2e-09 | ||
| 1ito_A | 256 | Crystal Structure Analysis Of Bovine Spleen Catheps | 2e-08 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 4e-09 | ||
| 1huc_B | 205 | The Refined 2.15 Angstroms X-Ray Crystal Structure | 1e-08 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-08 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 2e-08 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 2e-08 | ||
| 1sp4_B | 205 | Crystal Structure Of Ns-134 In Complex With Bovine | 2e-08 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-08 | ||
| 3hhi_A | 325 | Crystal Structure Of Cathepsin B From T. Brucei In | 5e-08 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 5e-08 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 2e-05 | ||
| 3mor_A | 317 | Crystal Structure Of Cathepsin B From Trypanosoma B | 6e-08 | ||
| 4hwy_A | 340 | Trypanosoma Brucei Procathepsin B Solved From 40 Fs | 6e-08 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 1e-07 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 3e-06 | ||
| 1k3b_C | 69 | Crystal Structure Of Human Dipeptidyl Peptidase I ( | 2e-07 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 6e-07 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 1e-05 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 7e-07 | ||
| 3pdf_A | 441 | Discovery Of Novel Cyanamide-Based Inhibitors Of Ca | 8e-07 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 1e-06 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 2e-06 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 2e-04 | ||
| 1sp4_A | 48 | Crystal Structure Of Ns-134 In Complex With Bovine | 2e-06 | ||
| 1jqp_A | 438 | Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric | 3e-06 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 3e-06 | ||
| 3i2n_A | 357 | Crystal Structure Of Wd40 Repeats Protein Wdr92 Len | 6e-06 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 7e-06 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 2e-04 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 8e-06 | ||
| 1huc_A | 47 | The Refined 2.15 Angstroms X-Ray Crystal Structure | 2e-05 | ||
| 2p7u_A | 215 | The Crystal Structure Of Rhodesain, The Major Cyste | 3e-05 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 4e-05 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 4e-05 | ||
| 4i79_A | 399 | Crystal Structure Of Human Nup43 Length = 399 | 2e-04 | ||
| 1pgu_A | 615 | Yeast Actin Interacting Protein 1 (aip1), Se-met Pr | 3e-04 | ||
| 3qj3_A | 331 | Structure Of Digestive Procathepsin L2 Proteinase F | 4e-04 | ||
| 1deu_A | 277 | Crystal Structure Of Human Procathepsin X: A Cystei | 4e-04 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 5e-04 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 8e-04 | ||
| 1ef7_A | 242 | Crystal Structure Of Human Cathepsin X Length = 242 | 5e-04 | ||
| 8pch_A | 220 | Crystal Structure Of Porcine Cathepsin H Determined | 6e-04 | ||
| 1ewp_A | 215 | Cruzain Bound To Mor-Leu-Hpq Length = 215 | 7e-04 | ||
| 1aim_A | 215 | Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor | 7e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317 | Back alignment and structure |
|
| >pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317 | Back alignment and structure |
|
| >pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260 | Back alignment and structure |
|
| >pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254 | Back alignment and structure |
|
| >pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254 | Back alignment and structure |
|
| >pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256 | Back alignment and structure |
|
| >pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256 | Back alignment and structure |
|
| >pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254 | Back alignment and structure |
|
| >pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254 | Back alignment and structure |
|
| >pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261 | Back alignment and structure |
|
| >pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322 | Back alignment and structure |
|
| >pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266 | Back alignment and structure |
|
| >pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253 | Back alignment and structure |
|
| >pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256 | Back alignment and structure |
|
| >pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317 | Back alignment and structure |
|
| >pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 48 | Back alignment and structure |
|
| >pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92 Length = 357 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 47 | Back alignment and structure |
|
| >pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399 | Back alignment and structure |
|
| >pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331 | Back alignment and structure |
|
| >pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242 | Back alignment and structure |
|
| >pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220 | Back alignment and structure |
|
| >pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215 | Back alignment and structure |
|
| >pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2435 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3hhi_A | 325 | Cathepsin B-like cysteine protease; occluding loop | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3tnx_A | 363 | Papain; hydrolase, cytoplasm for recombinant expre | 100.0 | |
| 3pbh_A | 317 | Procathepsin B; thiol protease, cysteine protease, | 100.0 | |
| 3pdf_A | 441 | Cathepsin C, dipeptidyl peptidase 1; two domains, | 100.0 | |
| 3qt4_A | 329 | Cathepsin-L-like midgut cysteine proteinase; hydro | 100.0 | |
| 3qj3_A | 331 | Cathepsin L-like protein; hydrolase, proteinase, l | 100.0 | |
| 1cs8_A | 316 | Human procathepsin L; prosegment, propeptide, inhi | 100.0 | |
| 1by8_A | 314 | Protein (procathepsin K); hydrolase(sulfhydryl pro | 100.0 | |
| 2c0y_A | 315 | Procathepsin S; proenzyme, proteinase, hydrolase, | 100.0 | |
| 1pci_A | 322 | Procaricain; zymogen, hydrolase, thiol protease; 3 | 100.0 | |
| 1xkg_A | 312 | DER P I, major mite fecal allergen DER P 1; major | 100.0 | |
| 2o6x_A | 310 | Procathepsin L1, secreted cathepsin L 1; hydrolase | 100.0 | |
| 3cbj_A | 266 | Cathepsin B; cathepsin B, occluding loop, chagas d | 100.0 | |
| 3qsd_A | 254 | Cathepsin B-like peptidase (C01 family); cysteine | 100.0 | |
| 1m6d_A | 214 | Cathepsin F, catsf; papain family cysteine proteas | 100.0 | |
| 8pch_A | 220 | Cathepsin H; hydrolase, protease, cysteine protein | 100.0 | |
| 3i06_A | 215 | Cruzipain; autocatalytic cleavage, glycoprotein, p | 100.0 | |
| 3p5u_A | 220 | Actinidin; SAD, cysteine proteinases, hydrolase; 1 | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3u8e_A | 222 | Papain-like cysteine protease; papain-like cystein | 100.0 | |
| 3kwz_A | 215 | Cathepsin K; enzyme inhibitor, covalent reversible | 100.0 | |
| 2xu3_A | 220 | Cathepsin L1; hydrolase, drug design, thiol protea | 100.0 | |
| 3f5v_A | 222 | DER P 1 allergen; allergy, asthma, DUST mites, gly | 100.0 | |
| 1s4v_A | 229 | Cysteine endopeptidase; KDEL ER retention signal, | 100.0 | |
| 3ovx_A | 218 | Cathepsin S; hydrolase, covalent inhibitor, aldehy | 100.0 | |
| 1ppo_A | 216 | Protease omega; hydrolase(thiol protease); 1.80A { | 100.0 | |
| 2fo5_A | 262 | Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst | 100.0 | |
| 1yal_A | 218 | Chymopapain; hydrolase, thiol protease; 1.70A {Car | 100.0 | |
| 1iwd_A | 215 | Ervatamin B; cysteine protease, alpha-beta protein | 100.0 | |
| 1cqd_A | 221 | Protein (protease II); cysteine protease, glycopro | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2b1m_A | 246 | SPE31; papain-like, sugar binding protein; HET: NA | 100.0 | |
| 3ioq_A | 213 | CMS1MS2; caricaceae, cysteine protease, papain fam | 100.0 | |
| 3f75_A | 224 | Toxopain-2, cathepsin L protease; medical structur | 100.0 | |
| 1deu_A | 277 | Procathepsin X; cysteine protease, proregion, pros | 100.0 | |
| 2cio_A | 212 | Papain; hydrolase/inhibitor, complex hydrolase/inh | 100.0 | |
| 1o0e_A | 208 | Ervatamin C; plant cysteine protease, two domain, | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2bdz_A | 214 | Mexicain; cysteine protease, peptidase_C1, papain- | 100.0 | |
| 3bwk_A | 243 | Cysteine protease falcipain-3; malaria, hydrolase; | 100.0 | |
| 2oul_A | 241 | Falcipain 2; cysteine protease, inhibitor, macromo | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2wbf_X | 265 | Serine-repeat antigen protein; SERA, malaria, vacu | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.98 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.98 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.98 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.98 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.98 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 3ois_A | 291 | Cysteine protease; alpha and beta, hydrolase; HET: | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.93 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.93 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.93 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 2cb5_A | 453 | Protein (bleomycin hydrolase); aminopeptidase, cys | 99.92 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.92 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.92 | |
| 2e01_A | 457 | Cysteine proteinase 1; bleomycin hydrolase, thiol | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.9 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.89 | |
| 3pw3_A | 383 | Aminopeptidase C; bleomycin, cysteine proteinase f | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.86 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.86 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.84 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.84 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.82 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.82 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.82 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.81 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.81 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.81 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.8 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.8 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.79 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.78 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.77 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.77 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.75 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.73 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.72 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.72 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.72 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.72 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.71 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.71 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.71 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.71 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.7 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.69 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.68 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.67 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.66 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.65 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.64 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.6 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.6 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.56 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.56 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.55 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.53 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.53 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.52 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.5 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.49 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.49 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.49 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.46 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.46 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.45 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.39 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.39 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.37 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.36 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.35 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.34 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.34 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.32 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.31 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.31 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.31 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.3 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.3 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.28 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.28 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.27 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.27 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.25 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.25 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.24 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.23 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.18 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.18 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.17 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.13 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.13 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.13 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.12 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.12 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.07 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.05 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.04 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.04 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.03 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.03 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.03 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.02 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.02 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.02 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.01 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.0 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.98 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.98 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.97 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.96 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.95 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.9 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.87 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.85 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.85 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.83 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.82 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.81 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.79 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.77 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.68 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.65 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.61 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.6 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.59 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.58 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.57 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.57 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.54 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.52 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.49 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.46 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.45 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.45 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.42 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.4 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.35 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.34 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.33 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.32 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.3 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.28 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.27 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.26 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.25 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.23 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.22 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.18 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.06 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.04 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.02 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.02 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.99 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.97 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.94 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.9 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.89 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.88 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.87 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.81 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.79 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.77 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.74 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.74 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.72 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.69 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.65 | |
| 3h0g_A | 1752 | DNA-directed RNA polymerase II subunit RPB1; trans | 97.64 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.61 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.61 | |
| 3h0g_A | 1752 | DNA-directed RNA polymerase II subunit RPB1; trans | 97.59 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.56 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.52 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.51 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.49 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.48 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.42 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.37 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.36 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.28 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.25 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.22 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.18 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.12 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.11 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.1 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.08 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.0 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.89 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.81 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.79 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.69 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.61 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.58 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.54 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.38 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.87 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.77 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.4 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.15 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.09 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.09 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.09 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.97 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 94.9 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.89 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.47 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.39 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.29 | |
| 1twf_A | 1733 | B220, DNA-directed RNA polymerase II largest subun | 94.12 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 93.64 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 93.43 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.39 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 93.27 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.15 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 93.06 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.02 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 92.21 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 92.21 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 92.02 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 91.94 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 91.65 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 91.19 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.93 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 90.79 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 90.77 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 90.25 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 90.14 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 88.78 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 88.52 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 87.43 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 84.79 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 84.65 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 83.92 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 83.48 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 80.67 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-58 Score=633.04 Aligned_cols=568 Identities=32% Similarity=0.520 Sum_probs=491.1
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
...|+||.+.|++++|+|||++||+|+.|+.|+|||..+ +.+..+.+|.+.|.+++|+||+++|++++.|+.|++||+
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~--~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~ 86 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 86 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC--CEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 356899999999999999999999999999999999654 456778999999999999999999999999999999996
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
+++.+..+.+|...|.+++|+|++ .++++++.|+.+++|+...........+...+.++.++|+++.++.++.++.++
T Consensus 87 -~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (577)
T 2ymu_A 87 -NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred -CCCEEEEEECCCCCEEEEEECCCC-CEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccccee
Confidence 688999999999999999999987 567899999999999988776666667888999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC
Q psy4869 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594 (2435)
Q Consensus 515 lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~ 594 (2435)
+|+.. .........|...|.++.|+|++++|++++.|+.|++||.. .+.+..+.+|. ..+.+++|+|+|+
T Consensus 165 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-----~~~~~~~~~~~----~~v~~~~~s~dg~ 234 (577)
T 2ymu_A 165 LWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHS----SSVRGVAFSPDGQ 234 (577)
T ss_dssp EECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----SCEEEEEECCS----SCEEEEEECTTSS
T ss_pred ccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-----CcEEEEEecCC----CCEEEEEECCCCC
Confidence 99964 45666778899999999999999999999999999999964 46777787775 4789999999999
Q ss_pred EEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEe
Q psy4869 595 YVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMV 674 (2435)
Q Consensus 595 ~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~ 674 (2435)
+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++|+.+. .
T Consensus 235 ~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~------~------------- 294 (577)
T 2ymu_A 235 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG------Q------------- 294 (577)
T ss_dssp CEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS------C-------------
T ss_pred EEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC------c-------------
Confidence 9999999999999995 5788889999999999999999999999999999999998530 0
Q ss_pred cCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeee
Q psy4869 675 NDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCH 754 (2435)
Q Consensus 675 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 754 (2435)
.
T Consensus 295 --------------------------------------------------------------~----------------- 295 (577)
T 2ymu_A 295 --------------------------------------------------------------L----------------- 295 (577)
T ss_dssp --------------------------------------------------------------E-----------------
T ss_pred --------------------------------------------------------------E-----------------
Confidence 0
Q ss_pred cCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccc
Q psy4869 755 GNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGK 834 (2435)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (2435)
+
T Consensus 296 ----~--------------------------------------------------------------------------- 296 (577)
T 2ymu_A 296 ----L--------------------------------------------------------------------------- 296 (577)
T ss_dssp ----E---------------------------------------------------------------------------
T ss_pred ----E---------------------------------------------------------------------------
Confidence 0
Q ss_pred eeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEec-CCcEEEEeC
Q psy4869 835 IKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSAC-ASQVKIWNR 913 (2435)
Q Consensus 835 ~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~-~~~V~Iwd~ 913 (2435)
..+.||...|.+++|+|++++|+++. ++.|++||.
T Consensus 297 --------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 297 --------------------------------------------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332 (577)
T ss_dssp --------------------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred --------------------------------------------EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 00235777899999999999999886 589999998
Q ss_pred CCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEE
Q psy4869 914 PSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVV 993 (2435)
Q Consensus 914 ~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~ 993 (2435)
...+......+...+.+++|+|++++|++|..||.|.+||. +++++..+.+|.
T Consensus 333 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~-------------------------- 385 (577)
T 2ymu_A 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-------------------------- 385 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCS--------------------------
T ss_pred CCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC--------------------------
Confidence 76544433336778889999999999999999999999884 344444333333
Q ss_pred EEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCe
Q psy4869 994 TGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK 1073 (2435)
Q Consensus 994 sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~ 1073 (2435)
..|.+++|+|||++|++++.|+.|++|+. +++
T Consensus 386 -----------------------------------------------~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~ 417 (577)
T 2ymu_A 386 -----------------------------------------------SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 417 (577)
T ss_dssp -----------------------------------------------SCEEEEEECTTSSCEEEEETTSEEEEECT-TCC
T ss_pred -----------------------------------------------CCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCC
Confidence 34556666677777777777777777774 446
Q ss_pred EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q psy4869 1074 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1153 (2435)
Q Consensus 1074 ~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~ 1153 (2435)
.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||.
T Consensus 418 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 496 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence 66778889999999999999999999999999999996 57788899999999999999999999999999999999995
Q ss_pred CCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE
Q psy4869 1154 DNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs 1233 (2435)
+++.+.. +.+|...|++++|+|++++|++++.||.|++||. +++++..+.+|.+.|.+++|+||+++|++++
T Consensus 497 -~~~~~~~------~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 497 -NGQLLQT------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp -TSCEEEE------EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred -CCCEEEE------EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 4444443 3589999999999999999999999999999996 5788899999999999999999999999999
Q ss_pred CCCcEEEEE
Q psy4869 1234 KDGRVKQWD 1242 (2435)
Q Consensus 1234 ~Dg~I~vwD 1242 (2435)
.|+.|++||
T Consensus 569 ~D~~i~~Wd 577 (577)
T 2ymu_A 569 SDKTVKLWN 577 (577)
T ss_dssp TTSCEEEEC
T ss_pred CCCEEEEeC
Confidence 999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-58 Score=629.89 Aligned_cols=570 Identities=32% Similarity=0.486 Sum_probs=495.5
Q ss_pred cEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 522 SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 522 ~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
+..+.|++|.+.|++|+|+|||++||+++.|++|+|||.. .+++..+.+|. ..|.+++|+|||++|++++.
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-----~~~~~~l~gh~----~~V~~l~fspdg~~las~~~ 77 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHS----SSVWGVAFSPDGQTIASASD 77 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----SCEEEEEECCS----SCEEEEEECTTSSEEEEEET
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-----CCEEEEEeCCC----CCEEEEEECCCCCEEEEEeC
Confidence 3456789999999999999999999999999999999953 57888899886 47999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeE
Q psy4869 602 DKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQI 681 (2435)
Q Consensus 602 Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (2435)
|+.|+|||. +++++..+.+|.+.|.+++|+|++++|++++.|+.+++|+.....
T Consensus 78 d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~------------------------- 131 (577)
T 2ymu_A 78 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL------------------------- 131 (577)
T ss_dssp TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE-------------------------
T ss_pred CCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce-------------------------
Confidence 999999995 678899999999999999999999999999999999999863000
Q ss_pred EEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeeecCCceEE
Q psy4869 682 LCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVD 761 (2435)
Q Consensus 682 l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (2435)
.
T Consensus 132 -----------------------------------------------------------------------------~-- 132 (577)
T 2ymu_A 132 -----------------------------------------------------------------------------L-- 132 (577)
T ss_dssp -----------------------------------------------------------------------------E--
T ss_pred -----------------------------------------------------------------------------e--
Confidence 0
Q ss_pred EEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccceeEEeEE
Q psy4869 762 LFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVI 841 (2435)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 841 (2435)
T Consensus 133 -------------------------------------------------------------------------------- 132 (577)
T 2ymu_A 133 -------------------------------------------------------------------------------- 132 (577)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEecC-CcEEEEeCCCCceeE
Q psy4869 842 LGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLR 920 (2435)
Q Consensus 842 ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~-~~V~Iwd~~~~~~~~ 920 (2435)
....+|...|.++.+++++..++.+.. +.+++|+........
T Consensus 133 -------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (577)
T 2ymu_A 133 -------------------------------------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 175 (577)
T ss_dssp -------------------------------------EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEE
T ss_pred -------------------------------------eeccCCCCceeeeeeecCCccceecccccceeccccceeeeee
Confidence 001124456677888888888888764 788888876665555
Q ss_pred EEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCe
Q psy4869 921 TIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000 (2435)
Q Consensus 921 ~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~ 1000 (2435)
.......+.+++|+|++++|++|+.|+.|.+||. +++.+..+.+|...|.+++|+|++ ..|++++.|+.
T Consensus 176 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg----------~~l~~~~~d~~ 244 (577)
T 2ymu_A 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG----------QTIASASDDKT 244 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS----------SCEEEEETTSC
T ss_pred ccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCC----------CEEEEEeCCCE
Confidence 5567888999999999999999999999999995 678888899999999999999986 58999999999
Q ss_pred EEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec
Q psy4869 1001 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG 1080 (2435)
Q Consensus 1001 V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~ 1080 (2435)
|++|+.+... +. ....+...|.+++|+|++++|++++.|+.|++|+.. ++.+..+.+
T Consensus 245 i~~w~~~~~~------------------~~----~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~ 301 (577)
T 2ymu_A 245 VKLWNRNGQL------------------LQ----TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTG 301 (577)
T ss_dssp EEEECTTSCE------------------EE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECC
T ss_pred EEEEeCCCCE------------------EE----EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEec
Confidence 9999864210 00 112356789999999999999999999999999964 577788999
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeE
Q psy4869 1081 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160 (2435)
Q Consensus 1081 h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~ 1160 (2435)
|...|.+++|+|++++|++++.|+.|++||+. +..+..+..|...|.+++|+|++++|++++.|+.|++||.. ++.+.
T Consensus 302 h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~ 379 (577)
T 2ymu_A 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 379 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEE
Confidence 99999999999999999999999999999975 45667788899999999999999999999999999999964 33333
Q ss_pred EEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEE
Q psy4869 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1240 (2435)
Q Consensus 1161 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~v 1240 (2435)
. +..|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|+++.|++++.|+.|++
T Consensus 380 ~------~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~ 452 (577)
T 2ymu_A 380 T------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452 (577)
T ss_dssp E------EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred E------ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEE
Confidence 3 3479999999999999999999999999999996 47778889999999999999999999999999999999
Q ss_pred EECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEE
Q psy4869 1241 WDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA 1320 (2435)
Q Consensus 1241 wD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 1320 (2435)
||... +.+..+ ..+...+.++
T Consensus 453 w~~~~-~~~~~~----------------------------------------------------------~~~~~~v~~~ 473 (577)
T 2ymu_A 453 WNRNG-QLLQTL----------------------------------------------------------TGHSSSVRGV 473 (577)
T ss_dssp EETTS-CEEEEE----------------------------------------------------------ECCSSCEEEE
T ss_pred EECCC-CEEEEE----------------------------------------------------------cCCCCCEEEE
Confidence 99642 221111 0134578999
Q ss_pred EecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccc
Q psy4869 1321 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1400 (2435)
Q Consensus 1321 a~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~ 1400 (2435)
+|+||+++||+++.|+.|++||. +++.+..+.+|...|.+++|+|||++|++|+.|+.|++||. +++++..+.+|.+.
T Consensus 474 ~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~ 551 (577)
T 2ymu_A 474 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 551 (577)
T ss_dssp EECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSC
T ss_pred EEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCC
Confidence 99999999999999999999995 67889999999999999999999999999999999999996 68889999999999
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1401 VTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1401 V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
|++|+|+|++++|+|+|.||.|++||
T Consensus 552 v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 552 VWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-57 Score=617.81 Aligned_cols=561 Identities=18% Similarity=0.266 Sum_probs=464.0
Q ss_pred ceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC--eeEEE
Q psy4869 77 EVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE--CGLHR 154 (2435)
Q Consensus 77 ~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~--~~~~~ 154 (2435)
.+.+++++|||++||++. ++.+++|++.+++.+..|.||.+.|++++|+|+|++||||+.|++|+|||+.+. .....
T Consensus 20 ~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~ 98 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT 98 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred ceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEe
Confidence 345789999999999986 569999999999999999999999999999999999999999999999998653 34567
Q ss_pred EecCCCcEEEEEEeecCCCcEEEEEeCC----CcEEEEeccCCccccccccccceEEEEEEEeCCC-eEEEeeCCCcEEE
Q psy4869 155 LSGHKGVITDIRFMSQPGHHFVVSSAKD----TFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDS-YLISGSNDAELKV 229 (2435)
Q Consensus 155 l~gH~~~V~~v~~~~~~~~~~l~S~s~D----g~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~Dg~v~v 229 (2435)
+.+|.++|.+++|+| ++.+|++++.| +.|++|| +|+++.++.+|...|++++|+|++. .|++|+.|++|++
T Consensus 99 ~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~l 174 (611)
T 1nr0_A 99 IPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174 (611)
T ss_dssp EECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred ecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEE
Confidence 899999999999985 45678887765 3566666 6788889999999999999999987 5999999999999
Q ss_pred EEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCcccccc
Q psy4869 230 WNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGI 309 (2435)
Q Consensus 230 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2435)
||.+..+
T Consensus 175 wd~~~~~------------------------------------------------------------------------- 181 (611)
T 1nr0_A 175 FEGPPFK------------------------------------------------------------------------- 181 (611)
T ss_dssp EETTTBE-------------------------------------------------------------------------
T ss_pred EECCCCe-------------------------------------------------------------------------
Confidence 9965310
Q ss_pred chhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy4869 310 DTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIW 389 (2435)
Q Consensus 310 ~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iw 389 (2435)
....+.+|.+.|.+++|+|+|++||+|+.|+.|++|
T Consensus 182 --------------------------------------------~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lw 217 (611)
T 1nr0_A 182 --------------------------------------------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217 (611)
T ss_dssp --------------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred --------------------------------------------EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEE
Confidence 012356899999999999999999999999999999
Q ss_pred ecCCceeeEEEe-e------CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccC---ccccccCcccCC
Q psy4869 390 SVYGECENIGVM-S------GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHS---TFVNSCDPVRRG 459 (2435)
Q Consensus 390 d~~~~~~~~~~l-~------~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~---~~v~sv~~~~~~ 459 (2435)
|+..+.. ...+ . +|.+.|.+++|+||+++|++++.|++|++||+++++.+..+..+. .....+.| .
T Consensus 218 d~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~---~ 293 (611)
T 1nr0_A 218 NGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW---T 293 (611)
T ss_dssp ETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE---C
T ss_pred ECCCCcE-eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE---c
Confidence 9876533 3344 2 799999999999999999999999999999999999988887542 22333444 2
Q ss_pred CeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEE-ecCCCCEEEE
Q psy4869 460 QLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL-RGHSDTVTGL 537 (2435)
Q Consensus 460 ~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l-~~h~~~V~~i 537 (2435)
...+++++.|+.+++||...+.....+ .|...|.+++|+|+|++|++|+.||.|++||+.+++....+ .+|...|.++
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~ 373 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEE
Confidence 356889999999999999888765555 57889999999999999999999999999999999887766 6799999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCCCCCce--EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcE
Q psy4869 538 SLSPDGSYILSNAMDNTVRIWDIRPYVPGERC--VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI 615 (2435)
Q Consensus 538 ~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~--v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~ 615 (2435)
+|++++ .+++++.|+++++|++......... ...+ ......++|+|+|++++++ .++.+++|+ .++
T Consensus 374 ~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~dg~~~~~~-~~~~v~~~~--~~~- 441 (611)
T 1nr0_A 374 KTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKL-------SSQPLGLAVSADGDIAVAA-CYKHIAIYS--HGK- 441 (611)
T ss_dssp EECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEEC-------SSCEEEEEECTTSSCEEEE-ESSEEEEEE--TTE-
T ss_pred EECCCC-cEEEEEcCCceEEeecCCccccccceeeeec-------CCCCcEEEEeCCCcEEEEE-eCceEEEEe--CCc-
Confidence 999776 6889999999999998753221111 1111 1245678999999888777 567899999 344
Q ss_pred EEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeee
Q psy4869 616 AYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFY 695 (2435)
Q Consensus 616 ~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 695 (2435)
+..+. |...+.+++|+||+++|++|+.|++|++|++..
T Consensus 442 ~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~----------------------------------------- 479 (611)
T 1nr0_A 442 LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG----------------------------------------- 479 (611)
T ss_dssp EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-----------------------------------------
T ss_pred eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC-----------------------------------------
Confidence 45554 888999999999999999999999999998730
Q ss_pred eccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeeecCCceEEEEEEeecCCchHHH
Q psy4869 696 FCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRC 775 (2435)
Q Consensus 696 ~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (2435)
+ . +
T Consensus 480 ---------------------------------------~-~---------------------~---------------- 482 (611)
T 1nr0_A 480 ---------------------------------------A-S---------------------V---------------- 482 (611)
T ss_dssp ---------------------------------------T-E---------------------E----------------
T ss_pred ---------------------------------------C-c---------------------e----------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccceeEEeEEEecCceEEEEEEec
Q psy4869 776 RKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLN 855 (2435)
Q Consensus 776 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~ 855 (2435)
T Consensus 483 -------------------------------------------------------------------------------- 482 (611)
T 1nr0_A 483 -------------------------------------------------------------------------------- 482 (611)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEec-CCcEEEEeCCC-CceeEE--Ee-CCCeEEE
Q psy4869 856 NNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSAC-ASQVKIWNRPS-LSCLRT--ID-TGSYALS 930 (2435)
Q Consensus 856 p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~-~~~V~Iwd~~~-~~~~~~--l~-~~~~v~~ 930 (2435)
......+|...|++|+|+|||++||++. ++.|++||+.+ ++.+.. +. +...+.+
T Consensus 483 ---------------------~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~ 541 (611)
T 1nr0_A 483 ---------------------SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC 541 (611)
T ss_dssp ---------------------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE
T ss_pred ---------------------eeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeE
Confidence 0000024677899999999999999987 58999999987 554433 23 6778999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCc-ee-eccccc-ccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEc
Q psy4869 931 VCFVPGDRHVLVGTKDGRLLIVDIGAGE-IL-EDIPAH-SQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQL 1006 (2435)
Q Consensus 931 vafspdg~~Lavg~~dg~V~vwd~~sg~-~v-~~~~~h-~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l 1006 (2435)
++|+||+++|++|+.|+.|+|||+++++ .+ ..+.+| ...|.+++|+|++ .|++++.|+.|++|++
T Consensus 542 v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~-----------~l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 542 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-----------TIVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT-----------EEEEEETTSCEEEEEC
T ss_pred EEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC-----------EEEEecCCCCEEEEec
Confidence 9999999999999999999999999876 33 567789 8899999999986 4999999999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-57 Score=617.48 Aligned_cols=534 Identities=21% Similarity=0.286 Sum_probs=448.6
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC-ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC----CeEEE
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD----QTLAV 431 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D----g~I~v 431 (2435)
.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.. .......+.+|.+.|.+++|+||+++|++++.+ +.|++
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence 4668999999999999999999999999999999854 333445778999999999999999999999875 36777
Q ss_pred EECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecC
Q psy4869 432 WDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGID 510 (2435)
Q Consensus 432 wd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~d 510 (2435)
|| .++....+.+|...|.+++|+|+++.+|++++.|++|++||...++....+ .|...|.+++|+|+|++|++|+.|
T Consensus 134 wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 134 FD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp TT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence 76 677778889999999999999999888999999999999999888777766 578899999999999999999999
Q ss_pred CeEEEEECCCCcEEEEEe-------cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccC
Q psy4869 511 NDIKMWDLRTNSVVQKLR-------GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKN 583 (2435)
Q Consensus 511 g~V~lwD~~s~~~v~~l~-------~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~ 583 (2435)
+.|++||+.+++.+..+. +|.+.|.+++|+|||++|++++.|++|++||++. .+++..+..+. .....
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~----~~~~~~~~~~~-~~~~~ 286 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT----LKVEKTIPVGT-RIEDQ 286 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----TEEEEEEECCS-SGGGC
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC----CceeeeecCCC-Cccce
Confidence 999999999999998884 7999999999999999999999999999999983 56666665432 22345
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCccee
Q psy4869 584 LLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSIL 663 (2435)
Q Consensus 584 i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 663 (2435)
+..+.| ++++|++++.|+.+++||...+++...+.+|...|++++|+|++++|++++.||+|++||+..
T Consensus 287 ~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~--------- 355 (611)
T 1nr0_A 287 QLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST--------- 355 (611)
T ss_dssp EEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred eEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------
Confidence 667777 688999999999999999999999899999999999999999999999999999999999840
Q ss_pred ecCceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeee
Q psy4869 664 RSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMV 743 (2435)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~ 743 (2435)
+..
T Consensus 356 -----------------------------------------------------------------------~~~------ 358 (611)
T 1nr0_A 356 -----------------------------------------------------------------------GIS------ 358 (611)
T ss_dssp -----------------------------------------------------------------------CCE------
T ss_pred -----------------------------------------------------------------------Cce------
Confidence 000
Q ss_pred ccccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhccc
Q psy4869 744 NDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRL 823 (2435)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (2435)
. .
T Consensus 359 ---------------~-------------------------------------------------------------~-- 360 (611)
T 1nr0_A 359 ---------------N-------------------------------------------------------------R-- 360 (611)
T ss_dssp ---------------E-------------------------------------------------------------E--
T ss_pred ---------------e-------------------------------------------------------------e--
Confidence 0 0
Q ss_pred ccccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEe
Q psy4869 824 PTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSA 903 (2435)
Q Consensus 824 ~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g 903 (2435)
....+|...|.+++|++++.++.++
T Consensus 361 -------------------------------------------------------~~~~~h~~~v~~~~~s~~~~l~s~s 385 (611)
T 1nr0_A 361 -------------------------------------------------------VFPDVHATMITGIKTTSKGDLFTVS 385 (611)
T ss_dssp -------------------------------------------------------CSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred -------------------------------------------------------ecccCCcceEEEEEECCCCcEEEEE
Confidence 0012466788999999988777777
Q ss_pred cCCcEEEEeCCCCcee----EEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCC
Q psy4869 904 CASQVKIWNRPSLSCL----RTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQ 979 (2435)
Q Consensus 904 ~~~~V~Iwd~~~~~~~----~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~ 979 (2435)
.++.+++|+..+.... ..........+++|+|+++.++++ .++.+.+|+ .++ +..+. |...+.+++|+|++
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg 460 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDK 460 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTS
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCC
Confidence 7899999998865432 122334556789999999888877 467899998 454 44443 77789999999997
Q ss_pred CCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEE
Q psy4869 980 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL 1059 (2435)
Q Consensus 980 ~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~ 1059 (2435)
..|++|+.|+.|++|++..... .. .....+...|.+++|+|||++|++++
T Consensus 461 ----------~~lasgs~D~~v~lwd~~~~~~------------------~~--~~~~~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 461 ----------QFVAVGGQDSKVHVYKLSGASV------------------SE--VKTIVHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp ----------CEEEEEETTSEEEEEEEETTEE------------------EE--EEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred ----------CEEEEeCCCCeEEEEEccCCce------------------ee--eeccCCCCceEEEEECCCCCEEEEEc
Confidence 6999999999999999853211 00 01134678899999999999999999
Q ss_pred CCCcEEEEEcCC-CeEEEE--EecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc-ee-EEEecc-CCCEEEEEEc
Q psy4869 1060 LDTTVKIFFLDT-FKFFIS--LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD-CH-KSLLAH-EDSVTGVTFV 1133 (2435)
Q Consensus 1060 ~dg~V~i~d~~~-~~~~~~--l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~-~~-~~l~~h-~~~V~~v~fs 1133 (2435)
.|+.|++|++.+ ++.... +.+|...|.+++|+||+++|++|+.|++|++||++.+. .. ..+.+| ...|.+++|+
T Consensus 511 ~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs 590 (611)
T 1nr0_A 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590 (611)
T ss_dssp TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE
T ss_pred CCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEc
Confidence 999999999987 665443 33499999999999999999999999999999998765 33 566789 8999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCC
Q psy4869 1134 PKTHYFFTTSKDGRVKQWDAD 1154 (2435)
Q Consensus 1134 p~~~~l~s~s~Dg~V~iwD~~ 1154 (2435)
|++. |++++.|+.|++||+.
T Consensus 591 ~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 591 NETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTE-EEEEETTSCEEEEECC
T ss_pred CCCE-EEEecCCCCEEEEecc
Confidence 9998 9999999999999973
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-54 Score=642.65 Aligned_cols=623 Identities=20% Similarity=0.285 Sum_probs=533.8
Q ss_pred cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 487 NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 487 ~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
.|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+|++|++++.|++|++||+. .
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~----~ 688 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA----T 688 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----T
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC----C
Confidence 588899999999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CceEEEEeCcccccccCeEEEEEcC--CCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECC
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSV--SGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~sp--dg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~D 644 (2435)
++++..+.+|. ..+.++.|+| ++.++++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.|
T Consensus 689 ~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 689 GKLVHTYDEHS----EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp CCEEEEEECCS----SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred CceEEEEcCCC----CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence 67888888875 4789999999 55689999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCccc
Q psy4869 645 KTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLH 724 (2435)
Q Consensus 645 g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~ 724 (2435)
|.|++||+..... .... ..
T Consensus 765 g~v~vwd~~~~~~------------~~~~---------------------~~---------------------------- 783 (1249)
T 3sfz_A 765 GTLRLWDVRSANE------------RKSI---------------------NV---------------------------- 783 (1249)
T ss_dssp SEEEEEEGGGTEE------------EEEE---------------------EC----------------------------
T ss_pred CeEEEEeCCCCcc------------ccee---------------------cc----------------------------
Confidence 9999999851000 0000 00
Q ss_pred ccccccccccCCCeeeeeeccccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCC
Q psy4869 725 CDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDP 804 (2435)
Q Consensus 725 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 804 (2435)
.. . . ..
T Consensus 784 ---------~~-~---------------------~------~~------------------------------------- 789 (1249)
T 3sfz_A 784 ---------KR-F---------------------F------LS------------------------------------- 789 (1249)
T ss_dssp ---------CC-C---------------------C---------------------------------------------
T ss_pred ---------cc-c---------------------c------cc-------------------------------------
Confidence 00 0 0 00
Q ss_pred CCCCCCCCCcchhhhhcccccccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCC
Q psy4869 805 DDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGH 884 (2435)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH 884 (2435)
.. . ....+
T Consensus 790 ---------------------------------~~---------------~------------------------~~~~~ 797 (1249)
T 3sfz_A 790 ---------------------------------SE---------------D------------------------PPEDV 797 (1249)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ---------------------------------cC---------------C------------------------ccccc
Confidence 00 0 00012
Q ss_pred CCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe--CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeec
Q psy4869 885 HSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID--TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILED 962 (2435)
Q Consensus 885 ~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~--~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~ 962 (2435)
...|.+++|+|+|.+++++.++.|.+||..++..+..+. +...+.+++|+|+++++++|+.+|.|.+||+.++..+..
T Consensus 798 ~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~ 877 (1249)
T 3sfz_A 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 877 (1249)
T ss_dssp CCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE
T ss_pred cceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee
Confidence 235677999999999999999999999999999887775 667888999999999999999999999999999999999
Q ss_pred ccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCC
Q psy4869 963 IPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1042 (2435)
Q Consensus 963 ~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1042 (2435)
+.+|...|.+++|+|++ ..|++++.||.|++|++........ . ....
T Consensus 878 ~~~h~~~v~~v~~spdg----------~~l~s~s~dg~v~vw~~~~~~~~~~----------------------~-~~~~ 924 (1249)
T 3sfz_A 878 CRGHLSWVHGVMFSPDG----------SSFLTASDDQTIRVWETKKVCKNSA----------------------I-VLKQ 924 (1249)
T ss_dssp ECCCSSCEEEEEECTTS----------SEEEEEETTSCEEEEEHHHHHSCCS----------------------S-SEEE
T ss_pred cCCCccceEEEEECCCC----------CEEEEEeCCCeEEEEEccccceeee----------------------e-cccc
Confidence 99999999999999986 6899999999999999753221000 0 0112
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec
Q psy4869 1043 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1122 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~ 1122 (2435)
...+.+.+++..++.....+.+.++....+.... .+...+.+++|+|+++++++|+.||.|++||+.+++.+..+.+
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~ 1001 (1249)
T 3sfz_A 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY---LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1001 (1249)
T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE---ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC
T ss_pred eeeEEEcCCCcEEEEecCCcceEEEecCcceEEE---cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc
Confidence 2345677777778888878888888877665432 2456899999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q psy4869 1123 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202 (2435)
Q Consensus 1123 h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~ 1202 (2435)
|...|.+++|+|++++|++++.|+.|++||+.++.... ...|...|.+++|++++ .+++++.||.|++||+.
T Consensus 1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-------~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-------LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-------CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-------EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECC
Confidence 99999999999999999999999999999999876442 34789999999999865 67889999999999999
Q ss_pred CCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccc
Q psy4869 1203 YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLEL 1282 (2435)
Q Consensus 1203 t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~ 1282 (2435)
+++.+..+..|...|.+++|+|+++.|++++.||.|++||+...+.+..+
T Consensus 1074 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l------------------------------ 1123 (1249)
T 3sfz_A 1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL------------------------------ 1123 (1249)
T ss_dssp TTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC------------------------------
T ss_pred CCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee------------------------------
Confidence 99999999999999999999999999999999999999998764432110
Q ss_pred ccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEe---------c
Q psy4869 1283 VSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL---------Y 1353 (2435)
Q Consensus 1283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~---------~ 1353 (2435)
..+...|.+++|+|||++||+|+.||.|++||+.+++.+..+ .
T Consensus 1124 ----------------------------~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1175 (1249)
T 3sfz_A 1124 ----------------------------KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1175 (1249)
T ss_dssp ----------------------------CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC------
T ss_pred ----------------------------ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccccc
Confidence 123467899999999999999999999999999998876665 6
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1354 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1354 ~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
.|.+.|.+++|+|||++|++++ |.|++||+.+++++..+..|...|++++|+|++.+|++++.||.|.+|++.
T Consensus 1176 ~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1176 THGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp -CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred ccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 7899999999999999999986 899999999999999999999999999999999999999999999999975
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-54 Score=641.31 Aligned_cols=621 Identities=22% Similarity=0.342 Sum_probs=521.1
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
...+.+|.+.|++++|+|+|++|++|+.||.|++||+.... .+..+.+|.+.|.+++|+|++++|++++.|+.|++||+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 45788999999999999999999999999999999997653 45678899999999999999999999999999999999
Q ss_pred CCCceEEEEeccCccccccCcccC-CCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCe
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRR-GQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDND 512 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~-~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~ 512 (2435)
.+++.+..+.+|...|.++.|.++ +..++++|+.|+.|++||+++++....+ .|...|.+++|+|++++|++|+.||.
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 999999999999999999999986 3468899999999999999999888776 57889999999999999999999999
Q ss_pred EEEEECCCCcEEEEEec-------------CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEe-Cccc
Q psy4869 513 IKMWDLRTNSVVQKLRG-------------HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMS-GHQH 578 (2435)
Q Consensus 513 V~lwD~~s~~~v~~l~~-------------h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~-~h~~ 578 (2435)
|++||+++++....+.. +...+.+++|+|+|+.+++++ ++.+.+||+.. ...+..+. +|.
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~----~~~~~~~~~~~~- 840 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHT----SGLLAEIHTGHH- 840 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTT----CCEEEEEECSSS-
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecC----CCceeEEcCCCC-
Confidence 99999999988776642 233788999999999999987 78999999984 44454444 443
Q ss_pred ccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCcccc
Q psy4869 579 NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDK 658 (2435)
Q Consensus 579 ~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~ 658 (2435)
..+..++|+|+++++++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++|++......
T Consensus 841 ---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~ 917 (1249)
T 3sfz_A 841 ---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917 (1249)
T ss_dssp ---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSC
T ss_pred ---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccccee
Confidence 47889999999999999999999999999999999999999999999999999999999999999999997410000
Q ss_pred CcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCe
Q psy4869 659 AGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGR 738 (2435)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~ 738 (2435)
... . . .
T Consensus 918 ~~~----------------------------------------------------------~--------------~-~- 923 (1249)
T 3sfz_A 918 SAI----------------------------------------------------------V--------------L-K- 923 (1249)
T ss_dssp CSS----------------------------------------------------------S--------------E-E-
T ss_pred eee----------------------------------------------------------c--------------c-c-
Confidence 000 0 0 0
Q ss_pred eeeeeccccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhh
Q psy4869 739 VHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVD 818 (2435)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (2435)
... .
T Consensus 924 ---------~~~----------~--------------------------------------------------------- 927 (1249)
T 3sfz_A 924 ---------QEI----------D--------------------------------------------------------- 927 (1249)
T ss_dssp ---------EEE----------E---------------------------------------------------------
T ss_pred ---------cee----------e---------------------------------------------------------
Confidence 000 0
Q ss_pred hhcccccccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCc
Q psy4869 819 VVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNL 898 (2435)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~ 898 (2435)
+.+.+++.
T Consensus 928 ------------------------------------------------------------------------~~~~~~~~ 935 (1249)
T 3sfz_A 928 ------------------------------------------------------------------------VVFQENET 935 (1249)
T ss_dssp ------------------------------------------------------------------------EEEETTEE
T ss_pred ------------------------------------------------------------------------EEEcCCCc
Confidence 00000000
Q ss_pred E-EEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEec
Q psy4869 899 A-LVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLP 977 (2435)
Q Consensus 899 ~-la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~ 977 (2435)
. ++......+.+|+...+.... .....+.+++|+|+++++++|..+|.|.+||+.+++.+..+.+|...|.+++|+|
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~ 1013 (1249)
T 3sfz_A 936 MVLAVDNIRGLQLIAGKTGQIDY--LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1013 (1249)
T ss_dssp EEEEEESSSSEEEEEESSCCEEE--ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS
T ss_pred EEEEecCCcceEEEecCcceEEE--cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC
Confidence 0 001111223333333332221 1345577889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEE
Q psy4869 978 DQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV 1057 (2435)
Q Consensus 978 d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lav 1057 (2435)
++ ..|++++.||.|++|++..+... ....+...|.+++|++++. +++
T Consensus 1014 dg----------~~l~s~~~dg~i~vwd~~~~~~~----------------------~~~~~~~~v~~~~~~~~~~-l~~ 1060 (1249)
T 3sfz_A 1014 DG----------KTLISSSEDSVIQVWNWQTGDYV----------------------FLQAHQETVKDFRLLQDSR-LLS 1060 (1249)
T ss_dssp SS----------SCEEEECSSSBEEEEETTTTEEE----------------------CCBCCSSCEEEEEECSSSE-EEE
T ss_pred CC----------CEEEEEcCCCEEEEEECCCCceE----------------------EEecCCCcEEEEEEcCCCc-EEE
Confidence 86 58999999999999998643210 1234678899999999664 677
Q ss_pred EECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCC
Q psy4869 1058 SLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137 (2435)
Q Consensus 1058 g~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~ 1137 (2435)
++.||.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++++..+.+|...|.+++|+|+++
T Consensus 1061 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp EESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSS
T ss_pred EECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCcceeEEEEE---EEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccC
Q psy4869 1138 YFFTTSKDGRVKQWDADNFERIVTLHF---FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE 1214 (2435)
Q Consensus 1138 ~l~s~s~Dg~V~iwD~~~~~~~~~~~~---~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~ 1214 (2435)
+|++++.||.|++||+.+++....+.. ......|...|.+++|+|++.++++++ |.|++||+.+++.+..+..|.
T Consensus 1141 ~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~ 1218 (1249)
T 3sfz_A 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNG 1218 (1249)
T ss_dssp EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSS
T ss_pred EEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccC
Confidence 999999999999999998776554311 111246889999999999999999885 899999999999999999999
Q ss_pred CCEEEEEEeeCCCEEEEEECCCcEEEEECC
Q psy4869 1215 DSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1244 (2435)
Q Consensus 1215 ~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~ 1244 (2435)
..|.+++|+|+++.|++++.||.|.+|++.
T Consensus 1219 ~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1219 TNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp CCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred CcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 999999999999999999999999999874
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=566.97 Aligned_cols=521 Identities=18% Similarity=0.280 Sum_probs=454.4
Q ss_pred EecccCCc-EEEEEECC--CCCEEEEEeCCCeEEEEecCCc-------eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC
Q psy4869 357 LLEGHGGE-IFCSKYHP--DGQYIASSGYDRQIFIWSVYGE-------CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD 426 (2435)
Q Consensus 357 ~l~gH~~~-V~~l~fsp--dg~~Lasgs~Dg~I~iwd~~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 426 (2435)
.+.+|.+. |++++|+| ++++|++|+.||.|++||+... ......+..|...|.+++|+|++++|++++.+
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 137 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 137 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence 46789999 99999999 9999999999999999999532 34566778899999999999999999999988
Q ss_pred ----CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-Ccc---cEEEEEEC
Q psy4869 427 ----QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTY---QVTSVAFN 498 (2435)
Q Consensus 427 ----g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~---~v~sv~~s 498 (2435)
+.|++|| .++.+..+.+|...|.++.|+|+++.++++++.|+.|++||+..++.+..+. +.. .|.+++|+
T Consensus 138 ~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 138 RDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp SSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred CCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC
Confidence 6788888 7788999999999999999999998899999999999999999998888775 666 79999999
Q ss_pred CC-CCEEEEEecCCeEEEEECCCCcEEEEE-e---cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEE
Q psy4869 499 DT-AECVLTGGIDNDIKMWDLRTNSVVQKL-R---GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVM 573 (2435)
Q Consensus 499 p~-g~~l~sgs~dg~V~lwD~~s~~~v~~l-~---~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~ 573 (2435)
|+ +++|++|+.||.|++||+++++.+..+ . +|...|.+++|+ ++++|++++.|+.|++||++ ..+.+..+
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~----~~~~~~~~ 290 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT----TSKCVQKW 290 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT----TTEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC----CCcEEEEE
Confidence 99 999999999999999999999999999 6 899999999999 99999999999999999998 45677777
Q ss_pred eCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 574 SGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 574 ~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
..+.......+..+.|+ ++++|++|+.||.|++||+.+++++..+.+|.+.|++++| |+ |++++.||.|++|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 291 TLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp ECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred cCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 77654445678888886 8999999999999999999999999999999999999999 88 9999999999999862
Q ss_pred CccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccc
Q psy4869 654 LHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILR 733 (2435)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~ 733 (2435)
.
T Consensus 366 --------~----------------------------------------------------------------------- 366 (615)
T 1pgu_A 366 --------S----------------------------------------------------------------------- 366 (615)
T ss_dssp --------E-----------------------------------------------------------------------
T ss_pred --------h-----------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCeeeeeeccccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCC
Q psy4869 734 SGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGK 813 (2435)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (2435)
+
T Consensus 367 -------------------------~------------------------------------------------------ 367 (615)
T 1pgu_A 367 -------------------------M------------------------------------------------------ 367 (615)
T ss_dssp -------------------------E------------------------------------------------------
T ss_pred -------------------------h------------------------------------------------------
Confidence 0
Q ss_pred cchhhhhcccccccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEe
Q psy4869 814 PELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAF 893 (2435)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~ 893 (2435)
. .+|...|.+++|
T Consensus 368 ------------------------------------------------------------------~-~~~~~~v~~~~~ 380 (615)
T 1pgu_A 368 ------------------------------------------------------------------H-QDHSNLIVSLDN 380 (615)
T ss_dssp ------------------------------------------------------------------E-CCCCSCEEEEEC
T ss_pred ------------------------------------------------------------------c-CcccCceEEEEE
Confidence 0 124456777888
Q ss_pred cCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEE
Q psy4869 894 SSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSV 973 (2435)
Q Consensus 894 s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv 973 (2435)
++++.+++++.++.|++||+.+++... .+.+++|+|++++++++ .++.+.+|++.+++.+..+. |...+.++
T Consensus 381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~------~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 452 (615)
T 1pgu_A 381 SKAQEYSSISWDDTLKVNGITKHEFGS------QPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAV 452 (615)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEECSS------CEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred CCCcEEEEEeCCCCEEEEEcccCcccC------CceEEEEcCCCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEE
Confidence 444444444557999999987654332 56789999999888887 88999999999999888775 77899999
Q ss_pred EEecCCCCCCCcCCcceEEEEEeC-CCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCC
Q psy4869 974 AMLPDQFNPNVYLPLQIQVVTGGG-DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1052 (2435)
Q Consensus 974 ~~s~d~~~~~~~~p~~~~l~sgs~-Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg 1052 (2435)
+|+ . ..|++++. ||.|++|++...... ......+...|.+++|+|+|
T Consensus 453 ~~~-~-----------~~l~~~~~~d~~i~~~~~~~~~~~--------------------~~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 453 SLS-Q-----------NYVAVGLEEGNTIQVFKLSDLEVS--------------------FDLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp EEC-S-----------SEEEEEETTTSCEEEEETTEEEEE--------------------EECSSCCSSCEEEEEECTTS
T ss_pred EEc-C-----------CEEEEeecCCCeEEEEECCCcccc--------------------ccccCCccCceEEEEECCCC
Confidence 999 3 38999999 999999998642210 01123457889999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEEec-CCcCEEEEEEcC----------CCCEEEEEECCCcEEEEEccCC-ceeEEE
Q psy4869 1053 KLLAVSLLDTTVKIFFLDTFKFFISLYG-HKLPVLSLDMSY----------DSTLIATGSGDRTVKVWGLDYG-DCHKSL 1120 (2435)
Q Consensus 1053 ~~Lavg~~dg~V~i~d~~~~~~~~~l~~-h~~~V~sl~~sp----------dg~~L~Sgs~Dg~I~vWd~~t~-~~~~~l 1120 (2435)
++|++++.||.|++|++.+++.+..+.+ |...|.+++|+| ++++|++|+.||.|++||++++ +++..+
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 580 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 580 (615)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred CEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh
Confidence 9999999999999999999999999988 999999999999 9999999999999999999988 788889
Q ss_pred eccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1121 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155 (2435)
Q Consensus 1121 ~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~ 1155 (2435)
.+|...|.+++|+|++. |++++.|+.|++||+..
T Consensus 581 ~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 581 NAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred hcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999999999999 99999999999999864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-51 Score=563.15 Aligned_cols=550 Identities=16% Similarity=0.224 Sum_probs=477.6
Q ss_pred CCccceEEEeecCCCCeEEEEEcCCeEEEEECCCC----CeEEEecCCCCC-EEEEEEcC--CCCEEEEEeCCCCEEEEE
Q psy4869 73 GEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTT----DVISTFTGHKSA-ITVIQYDP--LGHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 73 g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~----~~~~~l~gH~~~-V~~l~f~p--~g~~laSgs~Dg~I~iWd 145 (2435)
.+...+.+++|+||+++||+++ ++.|++||++++ +.+..+.+|.+. |++++|+| ++++||+|+.||.|+|||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 4566788999999999999997 889999999999 899999999999 99999999 999999999999999999
Q ss_pred ccCC--------eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCC----CcEEEEeccCCccccccccccceEEEEEEEe
Q psy4869 146 VVAE--------CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKD----TFVKIWDADTGDCFKTMAAHLTEVWGVCVMR 213 (2435)
Q Consensus 146 ~~~~--------~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~D----g~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p 213 (2435)
+.++ ..+..+.+|.+.|.+++|+| ++.+|++++.| +.|++|| .++.+..+.+|...|.+++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECC
Confidence 9744 66788899999999999985 46688888887 6888888 6788899999999999999999
Q ss_pred CCC-eEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEe
Q psy4869 214 EDS-YLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLA 292 (2435)
Q Consensus 214 ~~~-~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 292 (2435)
+++ ++++++.|+.|++||++..+.
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~~~------------------------------------------------------- 195 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPFKF------------------------------------------------------- 195 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEE-------------------------------------------------------
T ss_pred CCCcEEEEEeCCCcEEEEeCCCcce-------------------------------------------------------
Confidence 998 799999999999999763210
Q ss_pred eeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCC---cEEEEE
Q psy4869 293 LCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGG---EIFCSK 369 (2435)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~---~V~~l~ 369 (2435)
...+.+|.+ .|.+++
T Consensus 196 --------------------------------------------------------------~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 196 --------------------------------------------------------------SASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp --------------------------------------------------------------EEEECSSSCTTCCEEEEE
T ss_pred --------------------------------------------------------------eeeecccCCCCceEEEEE
Confidence 012446777 899999
Q ss_pred ECCC-CCEEEEEeCCCeEEEEecCCceeeEEEe-e---CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q psy4869 370 YHPD-GQYIASSGYDRQIFIWSVYGECENIGVM-S---GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK 444 (2435)
Q Consensus 370 fspd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~l-~---~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~ 444 (2435)
|+|+ +++|++|+.||.|++||+.... .+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+.
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCC-EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 9999 9999999999999999997654 34455 5 899999999999 99999999999999999999999999998
Q ss_pred ccC----ccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 445 GHS----TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 445 ~h~----~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
.+. ..+.++.+. ....+++++.|+.|++||++.++.+..+ .|...|.+++| |+ +++|+.||.|++||++
T Consensus 292 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 292 LDKQQLGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp CCTTCGGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred CCCCcccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 773 455566664 3467889999999999999988777766 57889999999 88 9999999999999998
Q ss_pred CCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe
Q psy4869 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG 599 (2435)
Q Consensus 520 s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg 599 (2435)
.+. .+|...|.+++| +++..|++++.|+.|++||++.... ...+..++|+|+|++++++
T Consensus 366 ---~~~--~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~---------------~~~~~~~~~s~~~~~~~~~ 424 (615)
T 1pgu_A 366 ---SMH--QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF---------------GSQPKVASANNDGFTAVLT 424 (615)
T ss_dssp ---EEE--CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC---------------SSCEEEEEECSSSEEEEEE
T ss_pred ---hhc--CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc---------------cCCceEEEEcCCCCEEEEe
Confidence 444 889999999999 7788999999999999999873211 0146789999999988888
Q ss_pred cCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEecCCCccccCcceeecCceeeEEEecCCC
Q psy4869 600 SADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASS-DKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKH 678 (2435)
Q Consensus 600 s~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (2435)
.++.+.+|+..+++.+..+. |...+++++|+ +++|++++. ||.|++|++...
T Consensus 425 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~----------------------- 477 (615)
T 1pgu_A 425 -NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDL----------------------- 477 (615)
T ss_dssp -TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEE-----------------------
T ss_pred -CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCc-----------------------
Confidence 88999999999999988885 89999999999 889999999 999999998500
Q ss_pred CeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeeecCCc
Q psy4869 679 RQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDN 758 (2435)
Q Consensus 679 ~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (2435)
+
T Consensus 478 -----------------------------------------~-------------------------------------- 478 (615)
T 1pgu_A 478 -----------------------------------------E-------------------------------------- 478 (615)
T ss_dssp -----------------------------------------E--------------------------------------
T ss_pred -----------------------------------------c--------------------------------------
Confidence 0
Q ss_pred eEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccceeEE
Q psy4869 759 VVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSV 838 (2435)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 838 (2435)
+ .
T Consensus 479 ~-------------------------------------------------------------~----------------- 480 (615)
T 1pgu_A 479 V-------------------------------------------------------------S----------------- 480 (615)
T ss_dssp E-------------------------------------------------------------E-----------------
T ss_pred c-------------------------------------------------------------c-----------------
Confidence 0 0
Q ss_pred eEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEec-CCcEEEEeCCCCc
Q psy4869 839 DVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSAC-ASQVKIWNRPSLS 917 (2435)
Q Consensus 839 ~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~-~~~V~Iwd~~~~~ 917 (2435)
. ..+.+|...|++++|+|+|++|++|. ++.|+|||+.+++
T Consensus 481 --------------------------------------~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 481 --------------------------------------F-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp --------------------------------------E-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred --------------------------------------c-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc
Confidence 0 00224677899999999999999986 5899999999999
Q ss_pred eeEEEe--CCCeEEEEEEec----------CCCEEEEEeCCCeEEEEEccCC-ceeecccccccceeEEEEecCCCCCCC
Q psy4869 918 CLRTID--TGSYALSVCFVP----------GDRHVLVGTKDGRLLIVDIGAG-EILEDIPAHSQELWSVAMLPDQFNPNV 984 (2435)
Q Consensus 918 ~~~~l~--~~~~v~~vafsp----------dg~~Lavg~~dg~V~vwd~~sg-~~v~~~~~h~~~V~sv~~s~d~~~~~~ 984 (2435)
.+..+. +...+.+++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|++++
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~----- 596 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS----- 596 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-----
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC-----
Confidence 988776 778899999999 9999999999999999999998 7888899999999999999997
Q ss_pred cCCcceEEEEEeCCCeEEEEEcc
Q psy4869 985 YLPLQIQVVTGGGDKSVKLWQLE 1007 (2435)
Q Consensus 985 ~~p~~~~l~sgs~Dg~V~lW~l~ 1007 (2435)
. |++++.||.|++|+++
T Consensus 597 -----~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 597 -----T-LVSSGADACIKRWNVV 613 (615)
T ss_dssp -----E-EEEEETTSCEEEEEEC
T ss_pred -----C-eEEecCCceEEEEeee
Confidence 5 9999999999999975
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-47 Score=538.17 Aligned_cols=611 Identities=11% Similarity=0.096 Sum_probs=447.7
Q ss_pred EeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC
Q psy4869 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK 479 (2435)
Q Consensus 400 ~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~ 479 (2435)
...+|.+.|.+++|+|++++|++|+.||.|+|||..+++....+ .|...|.+++|++ +. +|++++.|+.|++||+++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTT
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCC
Confidence 34589999999999999999999999999999999877765554 4788899999999 54 889999999999999999
Q ss_pred CcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE-----------EEEecCCCCEEEEEEcCC-CCEEE
Q psy4869 480 KNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVV-----------QKLRGHSDTVTGLSLSPD-GSYIL 547 (2435)
Q Consensus 480 ~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v-----------~~l~~h~~~V~~i~~spd-g~~la 547 (2435)
++.+..+.+...|.+++|+|++++|++|+.||.|++||+++++.. ..+.+|.+.|.+|+|+|+ +..|+
T Consensus 89 ~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 89 QKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp CSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred CcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 998888888889999999999999999999999999999998764 233679999999999996 57899
Q ss_pred EEECCCcEEEEEcCCCCCCCceEEEEeCccc--------------ccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC
Q psy4869 548 SNAMDNTVRIWDIRPYVPGERCVKVMSGHQH--------------NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR 613 (2435)
Q Consensus 548 s~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~--------------~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~ 613 (2435)
+|+.|+.| +||++. .+++..+..|.. .....|.+++|+|+|++|++|+.||.|++||++++
T Consensus 169 ~g~~dg~v-lWd~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVE----NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EECSSCEE-EEETTT----TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred EEeCCCcE-EEECCC----CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 99999999 999983 567777766510 01246999999999999999999999999999999
Q ss_pred cEEEE--e---cC-------------CCCCeeEEEEc----CCC-CEEEEEECCC-----cEEEecCCCccccCcceeec
Q psy4869 614 RIAYK--L---PG-------------HNGSVNDVQFH----PKE-PIIMSASSDK-----TIYLGESPLHCDKAGSILRS 665 (2435)
Q Consensus 614 ~~~~~--l---~~-------------h~~~V~~l~fs----pd~-~~Lasgs~Dg-----~I~vWd~~~~~~~~~~~~~~ 665 (2435)
+++.. + .+ |...|++++|+ |++ .+|++|+.|. .+++|++....
T Consensus 244 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~--------- 314 (902)
T 2oaj_A 244 HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP--------- 314 (902)
T ss_dssp CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC---------
T ss_pred cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC---------
Confidence 88764 2 12 34579999995 443 4677887763 56666542000
Q ss_pred CceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeecc
Q psy4869 666 GKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVND 745 (2435)
Q Consensus 666 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~ 745 (2435)
. + .. .. .+....+
T Consensus 315 ------------------------~---~--~~---~s---~~~~~~~-------------------------------- 327 (902)
T 2oaj_A 315 ------------------------R---Y--SI---TS---YEGMKNY-------------------------------- 327 (902)
T ss_dssp ------------------------C---G--GG---CC---HHHHHHH--------------------------------
T ss_pred ------------------------C---c--cc---cc---hhhhhhh--------------------------------
Confidence 0 0 00 00 0000000
Q ss_pred ccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhccccc
Q psy4869 746 KHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPT 825 (2435)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (2435)
.+. |.
T Consensus 328 ----------------------------------------------------~~~-----------------------~~ 332 (902)
T 2oaj_A 328 ----------------------------------------------------YAN-----------------------PK 332 (902)
T ss_dssp ----------------------------------------------------HHS-----------------------CS
T ss_pred ----------------------------------------------------hcC-----------------------cc
Confidence 000 00
Q ss_pred ccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecC----------
Q psy4869 826 IKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSS---------- 895 (2435)
Q Consensus 826 ~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~---------- 895 (2435)
. .++ + ..+|...|..+.+.+
T Consensus 333 ~------~~~--~------------------------------------------~~~~~~~v~~~~~~~~~sp~~~g~~ 362 (902)
T 2oaj_A 333 Q------MKI--F------------------------------------------PLPTNVPIVNILPIPRQSPYFAGCH 362 (902)
T ss_dssp E------EEE--E------------------------------------------CCSSSSCEEEEEECCSSCSHHHHTB
T ss_pred c------eEE--E------------------------------------------ecCCCCceEEEEECCCCCCCcCCCC
Confidence 0 000 0 001122222333322
Q ss_pred CCcEEEEe-cCCcEEEEeCCCCceeEE-------Ee-CCCeEEEEEEecCCCEEEEEeCCCeEEEEEcc---CCceeecc
Q psy4869 896 DNLALVSA-CASQVKIWNRPSLSCLRT-------ID-TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG---AGEILEDI 963 (2435)
Q Consensus 896 dg~~la~g-~~~~V~Iwd~~~~~~~~~-------l~-~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~---sg~~v~~~ 963 (2435)
|...++++ .++.|++||+.++..... +. +...+.+++|++... .+|+.. .++....+
T Consensus 363 d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~~~~~~~~l 431 (902)
T 2oaj_A 363 NPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSAAQNKDYLL 431 (902)
T ss_dssp SCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHTTBCCCCSC
T ss_pred CceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhcccCCCCcc
Confidence 23244444 468899999987754322 11 335677888865321 123321 12223456
Q ss_pred cccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeee--eeccccccCC
Q psy4869 964 PAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL--LHTRTLKLEE 1041 (2435)
Q Consensus 964 ~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~ 1041 (2435)
.+|...+.+|+|+|++ ..|++|+.||.|++||+..+.... ...+.. .......+..
T Consensus 432 ~G~~~~v~sv~~spdg----------~~laSgs~DgtVrlWd~~~g~~~~------------~~~~~~~l~~~~~~~h~~ 489 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYG----------TAFITGHSNGSVRIYDASHGDIQD------------NASFEVNLSRTLNKAKEL 489 (902)
T ss_dssp CCSBCCCCCCCCCSEE----------EEEEEEETTSEEEEEESSCCTTTT------------TBCEEEEHHHHTTCSSSC
T ss_pred cCCcCCCCcccccccC----------cEEEEecCCCcEEEEECCCccccC------------CceEEeechhhcCCCCCC
Confidence 7888888888888875 799999999999999987543210 000000 0000114567
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCC---------------------------------------------eEEE
Q psy4869 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTF---------------------------------------------KFFI 1076 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~---------------------------------------------~~~~ 1076 (2435)
.|.+++|+|||++||+|+.||.|+||++.++ +++.
T Consensus 490 ~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 569 (902)
T 2oaj_A 490 AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST 569 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence 8999999999999999999999999998765 3467
Q ss_pred EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEE-----Ee-ccCCCEEEEEEc-----cCC---CEEEEE
Q psy4869 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-----LL-AHEDSVTGVTFV-----PKT---HYFFTT 1142 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~-----l~-~h~~~V~~v~fs-----p~~---~~l~s~ 1142 (2435)
.+.+|.+.|++++|+||| +||+|+.|++|++||++++..+.. +. +|...|++|+|+ ||+ .+|+++
T Consensus 570 ~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg 648 (902)
T 2oaj_A 570 AVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCG 648 (902)
T ss_dssp EECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE
T ss_pred EEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEE
Confidence 788999999999999999 999999999999999988766542 22 788999999999 885 799999
Q ss_pred eCCCcEEEEeC---CCcceeEEEEEEEeecccccCeEEEE-Ee----------------------CCCCEEEEEeCCCcE
Q psy4869 1143 SKDGRVKQWDA---DNFERIVTLHFFISLYGHKLPVLSLD-MS----------------------YDSTLIATGSGDRTV 1196 (2435)
Q Consensus 1143 s~Dg~V~iwD~---~~~~~~~~~~~~~~~~~h~~~V~~l~-~s----------------------~dg~~l~sgs~Dg~V 1196 (2435)
+.|++|++||+ .+++....+.... ...|.++|..++ |+ +++..|+++ +..|
T Consensus 649 s~D~tv~~wd~~p~~~g~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~i 725 (902)
T 2oaj_A 649 TDMGEVITYKILPASGGKFDVQLMDIT-NVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDI 725 (902)
T ss_dssp ETTSEEEEEEEEECGGGCEEEEEEEEE-ECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEE
T ss_pred ecCCcEEEEEEecCCCCcEEEEecCce-ecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccce
Confidence 99999999999 6666555543211 122457787777 65 344344443 7889
Q ss_pred EEEEccCCceeeEeeccCCCEEEE---E------EeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCC
Q psy4869 1197 KVWGLDYGDCHKSLLAHEDSVTGV---T------FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNP 1256 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~~~h~~~V~~i---~------~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~ 1256 (2435)
|||++.++++.+....|...+..+ . +++++..|++.+.||.|++|++...+++..+....
T Consensus 726 r~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 726 RLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp EEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence 999999999887777777667776 5 67889999999999999999999999888776543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=532.91 Aligned_cols=556 Identities=11% Similarity=0.102 Sum_probs=417.6
Q ss_pred CCCCceEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeE
Q psy4869 21 SPNCNVVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSL 99 (2435)
Q Consensus 21 ~~~~~v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i 99 (2435)
+|++.|.+++| +|+|++||+| .+|.|+|||....+... ...+...|.+++|+| +++|++++.||.|
T Consensus 15 gh~~~V~~laf-spdg~~lAsgs~Dg~I~lw~~~~~~~~~-----------~~~~~~~V~~l~fsp-g~~L~S~s~D~~v 81 (902)
T 2oaj_A 15 GMSSKPIAAAF-DFTQNLLAIATVTGEVHIYGQQQVEVVI-----------KLEDRSAIKEMRFVK-GIYLVVINAKDTV 81 (902)
T ss_dssp ECSSCEEEEEE-ETTTTEEEEEETTSEEEEECSTTCEEEE-----------ECSSCCCEEEEEEET-TTEEEEEETTCEE
T ss_pred CCCCCcEEEEE-CCCCCEEEEEeCCCEEEEEeCCCcEEEE-----------EcCCCCCEEEEEEcC-CCEEEEEECcCeE
Confidence 67999999976 7799999998 89999999987554322 122456789999999 8899999999999
Q ss_pred EEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeE-----------EEEecCCCcEEEEEEe
Q psy4869 100 KTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL-----------HRLSGHKGVITDIRFM 168 (2435)
Q Consensus 100 ~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~-----------~~l~gH~~~V~~v~~~ 168 (2435)
++||+++++.+..+. |.+.|++++|+|++++||+|+.||.|++||+.+.+.. ..+.+|.++|.+|+|+
T Consensus 82 ~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 82 YVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp EEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred EEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 999999999999987 7789999999999999999999999999999887753 2346899999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeccCCccccccccc------------------cceEEEEEEEeCCCeEEEeeCCCcEEEE
Q psy4869 169 SQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAH------------------LTEVWGVCVMREDSYLISGSNDAELKVW 230 (2435)
Q Consensus 169 ~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h------------------~~~V~~l~~~p~~~~l~s~s~Dg~v~vw 230 (2435)
|+ +..+|++|+.||.| +||++++++++.+..| ...|++++|+|++.+|++++.|++|++|
T Consensus 161 p~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 161 PR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp TT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred cC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 74 34578999999999 9999999988777655 5789999999999999999999999999
Q ss_pred EcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccc
Q psy4869 231 NVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGID 310 (2435)
Q Consensus 231 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (2435)
|+++++.+.... +.... +..
T Consensus 239 d~~~g~~~~~r~--------------------------------l~~~~-~~~--------------------------- 258 (902)
T 2oaj_A 239 DANSGHMIMART--------------------------------VFETE-INV--------------------------- 258 (902)
T ss_dssp ETTTCCEEEEEC--------------------------------SSCSC-TTS---------------------------
T ss_pred ECCCCcEEEEEe--------------------------------ecccc-cCC---------------------------
Confidence 998653210000 00000 000
Q ss_pred hhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEEC----CCC-CEEEEEeCC--
Q psy4869 311 TTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYH----PDG-QYIASSGYD-- 383 (2435)
Q Consensus 311 ~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fs----pdg-~~Lasgs~D-- 383 (2435)
.... .+.. -..|...|++++|+ |++ .+|++|+.|
T Consensus 259 ---------------------------------~~~~-----~~~~-~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~ 299 (902)
T 2oaj_A 259 ---------------------------------PQPD-----YIRD-SSTNAAKISKVYWMCENNPEYTSLLISHKSISR 299 (902)
T ss_dssp ---------------------------------CCTT-----CCCC-CSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred ---------------------------------CCCc-----CCCC-CccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence 0000 0000 00366789999995 543 577888776
Q ss_pred ---CeEEEEecCCc-----------------eeeEEEee-CCCCCeeEEEEcc----------CCCEEEEEeCCCeEEEE
Q psy4869 384 ---RQIFIWSVYGE-----------------CENIGVMS-GHTGAVMDLKFST----------DGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 384 ---g~I~iwd~~~~-----------------~~~~~~l~-~h~~~V~~l~~s~----------dg~~L~s~s~Dg~I~vw 432 (2435)
..+++|++... ......+. .|.+.|.++.+.+ +...+++++.|+.|++|
T Consensus 300 ~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~ 379 (902)
T 2oaj_A 300 GDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETM 379 (902)
T ss_dssp SSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEE
T ss_pred CCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEE
Confidence 37889985210 01122232 4678899999865 34478999999999999
Q ss_pred ECCCCceEEE-----------------------------------------EeccCccccccCcccCCCeEEEEEeCCCe
Q psy4869 433 DLEKGQRIKK-----------------------------------------MKGHSTFVNSCDPVRRGQLLIASGSDDCT 471 (2435)
Q Consensus 433 d~~tg~~v~~-----------------------------------------l~~h~~~v~sv~~~~~~~~llasgs~Dg~ 471 (2435)
|+.+|..... +.+|...+..++|+|++ .++++|+.|++
T Consensus 380 ~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~Dgt 458 (902)
T 2oaj_A 380 LYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGS 458 (902)
T ss_dssp ETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSE
T ss_pred ECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCc
Confidence 9977643321 34566667778888876 68899999999
Q ss_pred EEEEeCCCCcce----Ee--e------cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCC------------------
Q psy4869 472 VKVWDPRKKNQA----VS--M------NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTN------------------ 521 (2435)
Q Consensus 472 I~vwD~~~~~~~----~~--~------~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~------------------ 521 (2435)
|++||+..+... .. + .|...|.+++|+|+|++||+|+.||+|+|||+.++
T Consensus 459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~ 538 (902)
T 2oaj_A 459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF 538 (902)
T ss_dssp EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence 999999876432 11 1 46678999999999999999999999999999866
Q ss_pred ---------------------------cEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEE--
Q psy4869 522 ---------------------------SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV-- 572 (2435)
Q Consensus 522 ---------------------------~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~-- 572 (2435)
+++..+.+|.+.|++|+|+||| +||+|+.|++|+|||++. ...+..
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~----~~~~~~~~ 613 (902)
T 2oaj_A 539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG----PAIIYMEN 613 (902)
T ss_dssp CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT----TEEEEEEE
T ss_pred eeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC----CeEEEEee
Confidence 2467788999999999999999 999999999999999873 333321
Q ss_pred EeCcccccccCeEEEEEc-----CCC---CEEEEecCCCeEEEEEC---CCCcEEEEecCC-----CCCeeEEE-Ec---
Q psy4869 573 MSGHQHNFEKNLLRCAWS-----VSG---LYVTAGSADKCVYIWDT---TTRRIAYKLPGH-----NGSVNDVQ-FH--- 632 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~s-----pdg---~~Lasgs~Dg~V~iwd~---~s~~~~~~l~~h-----~~~V~~l~-fs--- 632 (2435)
+..+.......|.+++|+ ||| ++|++|+.|++|++||+ .+|+.+..+.+| .++|..++ |+
T Consensus 614 ~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 693 (902)
T 2oaj_A 614 IREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKET 693 (902)
T ss_dssp GGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTT
T ss_pred hhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCC
Confidence 111100123579999999 886 89999999999999999 788888888776 47788777 76
Q ss_pred -------------------CCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEE--e-------cCCCCeEEEE
Q psy4869 633 -------------------PKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTM--V-------NDKHRQILCC 684 (2435)
Q Consensus 633 -------------------pd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~ 684 (2435)
+++.+|+++ +..|++|+++.... ......+...+..+ + ...++..|++
T Consensus 694 ~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~--~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 769 (902)
T 2oaj_A 694 KSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKS--THKGFKYPLAATGLSYISTVEKNNDRKNLTVIIT 769 (902)
T ss_dssp CCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCE--EEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccc--eeeEcccceeeeEEEEEEeccccccccCceEEEE
Confidence 344444444 78899999985321 11112222222222 1 2455778999
Q ss_pred ecCCceEEeeeeccCCC
Q psy4869 685 HGNDNVVDLFYFCTKDE 701 (2435)
Q Consensus 685 ~~~d~~~~~~~~~~~~~ 701 (2435)
..++..+.+|.+...++
T Consensus 770 ~~~~g~i~~~s~p~l~~ 786 (902)
T 2oaj_A 770 LEINGHLRVFTIPDFKE 786 (902)
T ss_dssp EETTSEEEEEETTTCCE
T ss_pred EeCCCcEEEEECcchHH
Confidence 99999999999876443
|
| >3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-46 Score=453.86 Aligned_cols=230 Identities=30% Similarity=0.514 Sum_probs=155.4
Q ss_pred cccCCCCCCCCCcccccccccc---cCccCCCC-CCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcccc
Q psy4869 2139 LSANEDPEEFPNEDVFEHTFAE---IPNIDHSN-QTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGL 2214 (2435)
Q Consensus 2139 ~~~~~~~~ef~~~~~~~~~~~~---~~~~~~~~-~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~ 2214 (2435)
.++|||.|||++++........ ........ ....+||++||||++||+| |+|+||||||.|||||
T Consensus 33 ~f~dlt~eE~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~w~~~-g~vtpVkdQg~CGSCW---------- 101 (325)
T 3hhi_A 33 VMQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNC-PTIPQIADQSACGSCW---------- 101 (325)
T ss_dssp -----------------------CCSCBCCCCHHHHHCCCCSCEEHHHHSTTC-TTTTCCCBCCSSBCHH----------
T ss_pred ccccCCHHHHHHHhCCCCCCcccccccCccccccccccCCCCcEehhHhcCCC-CccccccCCCCccccH----------
Confidence 5889999999876442221111 00111110 1125799999999999998 6899999999999999
Q ss_pred ccceeeeccCCcccccccccccceehhHhhhhhhhhhcCC-CcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHH
Q psy4869 2215 KGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKG-QVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293 (2435)
Q Consensus 2215 ~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~-~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~ 2293 (2435)
|||++++||++++|++++ .+. ||+|+|+ ||... .+.||+||++..||
T Consensus 102 ----------------------AFsa~~alE~~~~i~~~~~~~~--LSeQ~Lv----dC~~~----~~~GC~GG~~~~A~ 149 (325)
T 3hhi_A 102 ----------------------AVAAASAMSDRFCTMGGVQDVH--ISAGDLL----ACCSD----CGDGCNGGDPDRAW 149 (325)
T ss_dssp ----------------------HHHHHHHHHHHHHHTSSCSSCC--BCHHHHH----HHCGG----GBCTTBCBCHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHhCCCccc--cCHHHHH----HhccC----CCCCCCCCCHHHHH
Confidence 999999999999999987 554 9999999 77641 24689999999999
Q ss_pred HHHHHcCccCCCcccCC-CC-----C-----cccc---------------------------------ccCcccceeecc
Q psy4869 2294 MYWINAGLVDGGDYGTH-DV-----S-----MGRY---------------------------------IEGIGHAASVMG 2329 (2435)
Q Consensus 2294 ~~~~~~Gi~~~~~y~~~-~~-----~-----~~~~---------------------------------~~~~~~~~~~~~ 2329 (2435)
+|++++||++|.+|||. .. . ..+. +..++..+...|
T Consensus 150 ~yi~~~Gi~~e~~yPY~~~~c~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~y~v~~~~~i~~~i~~~G 229 (325)
T 3hhi_A 150 AYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRG 229 (325)
T ss_dssp HHHHHTCBCBTTTSCCSSCCCBSSSCCTTCCCBGGGCCCCCCCCCSSCSSTTSCCCCBCEEEEEEECSHHHHHHHHHHHC
T ss_pred HHHHHhCCCcccccCCccccccccccccccCCCCCCcccCCcchhhcccccccccceEEeecceEeCCHHHHHHHHHHCC
Confidence 99999999999999997 21 0 0000 001112223345
Q ss_pred cCCcccc------cceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCccccccc
Q psy4869 2330 SSNPEVN------NFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403 (2435)
Q Consensus 2330 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~ 2403 (2435)
|+.+.++ .|+++++...|+ ...++|||+|||||++ +|++|||||||||+.|||+|||||+||.|+|||++
T Consensus 230 PV~v~i~~~~~f~~Y~~GVy~~~~~---~~~~~HaV~iVGyG~~-~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~ 305 (325)
T 3hhi_A 230 PFEVAFDVYEDFIAYNSGVYHHVSG---QYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED 305 (325)
T ss_dssp CEEEEEEEEHHHHTCCSSEECCCSC---CEEEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTS
T ss_pred CEEEEEEeccccccccCceecCCCC---CCCCCEEEEEEEEEec-CCceEEEEEeCCCCCcccCCEEEEEcCCCeecCcc
Confidence 6555444 444443322221 2245899999999964 79999999999999999999999999999999999
Q ss_pred ceeEEEeecCcc
Q psy4869 2404 SVMAGEAKLEGI 2415 (2435)
Q Consensus 2404 ~~~~~~~~~~~~ 2415 (2435)
++++++|++++-
T Consensus 306 ~~~~g~p~~~~~ 317 (325)
T 3hhi_A 306 GGSAGIPLAPNT 317 (325)
T ss_dssp CEEEEEEC----
T ss_pred ceEEeecCCCCc
Confidence 999999999763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=469.20 Aligned_cols=438 Identities=15% Similarity=0.181 Sum_probs=375.0
Q ss_pred ecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC
Q psy4869 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE 149 (2435)
Q Consensus 70 ~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~ 149 (2435)
.+.+|...|.+++|+|++.+||+++.+|.|++||+.+++.+..+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCC-ccccccccccceEEEEEEEe-CCCeEEEeeCCCcE
Q psy4869 150 CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTG-DCFKTMAAHLTEVWGVCVMR-EDSYLISGSNDAEL 227 (2435)
Q Consensus 150 ~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg-~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~Dg~v 227 (2435)
+.+..+.+|.+.|.+++|+| ++.+|++++.||.|++||++++ .+...+.+|...|.+++|+| ++..|++++.||+|
T Consensus 88 ~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 88 EKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp CEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred cEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999999985 4567999999999999999987 66778889999999999999 88899999999999
Q ss_pred EEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCcccc
Q psy4869 228 KVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAF 307 (2435)
Q Consensus 228 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (2435)
++||++.+...
T Consensus 166 ~vwd~~~~~~~--------------------------------------------------------------------- 176 (814)
T 3mkq_A 166 KVWSLGQSTPN--------------------------------------------------------------------- 176 (814)
T ss_dssp EEEETTCSSCS---------------------------------------------------------------------
T ss_pred EEEECCCCcce---------------------------------------------------------------------
Confidence 99998743210
Q ss_pred ccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECC--CCCEEEEEeCCCe
Q psy4869 308 GIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHP--DGQYIASSGYDRQ 385 (2435)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fsp--dg~~Lasgs~Dg~ 385 (2435)
.....+|...|.+++|+| ++.+|++|+.||.
T Consensus 177 -----------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 209 (814)
T 3mkq_A 177 -----------------------------------------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209 (814)
T ss_dssp -----------------------------------------------EEEECCCTTCCCEEEECCSTTCCEEEEECTTSE
T ss_pred -----------------------------------------------eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE
Confidence 001123446788999999 9999999999999
Q ss_pred EEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEE
Q psy4869 386 IFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIAS 465 (2435)
Q Consensus 386 I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llas 465 (2435)
|++||+.... ....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+|++..++++
T Consensus 210 i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 210 IKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp EEEEETTTTE-EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEE
T ss_pred EEEEECCCCc-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEE
Confidence 9999987653 466778999999999999999999999999999999999999999999999999999999998776445
Q ss_pred EeCCCeEEEEeCCCCcceEee--------------------------------------------cCcccEEEEEECCCC
Q psy4869 466 GSDDCTVKVWDPRKKNQAVSM--------------------------------------------NNTYQVTSVAFNDTA 501 (2435)
Q Consensus 466 gs~Dg~I~vwD~~~~~~~~~~--------------------------------------------~~~~~v~sv~~sp~g 501 (2435)
++.|+.+.+|++........+ .+...+.+++|+|+|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 368 (814)
T 3mkq_A 289 SGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG 368 (814)
T ss_dssp EEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS
T ss_pred EEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC
Confidence 555777888887643322211 123357899999999
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccc
Q psy4869 502 ECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE 581 (2435)
Q Consensus 502 ~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~ 581 (2435)
+++++++ +|.+.+|++...... +.+.|.+++|+|||++|++++.|+.|++|+.- .+|.
T Consensus 369 ~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~------------~~~~---- 426 (814)
T 3mkq_A 369 RFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKNF------------KEVT---- 426 (814)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEETT------------EECT----
T ss_pred CEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEECC------------CCcc----
Confidence 9999998 899999998766443 24567899999999999999999999999743 1222
Q ss_pred cCeEEEEEcCCC---CEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEE------ECCCcEEEec
Q psy4869 582 KNLLRCAWSVSG---LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSA------SSDKTIYLGE 651 (2435)
Q Consensus 582 ~~i~~v~~spdg---~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasg------s~Dg~I~vWd 651 (2435)
..+..+.|+|+| ++|++++.|+.|++||+.+++++..+..|.. .++|+|++++|+++ +.|+.+.+|.
T Consensus 427 ~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 427 SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 245678899998 6899999999999999999999999988876 89999999999999 5555555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=452.82 Aligned_cols=563 Identities=18% Similarity=0.225 Sum_probs=412.8
Q ss_pred ceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd 433 (2435)
....+.+|.+.|++++|+|+|.+||+|+.||.|+|||+..+. ....+.+|.+.|.+++|+|++++|++++.||.|++||
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 446789999999999999999999999999999999987653 5567789999999999999999999999999999999
Q ss_pred CCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC-cceEee-cCcccEEEEEECC-CCCEEEEEecC
Q psy4869 434 LEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK-NQAVSM-NNTYQVTSVAFND-TAECVLTGGID 510 (2435)
Q Consensus 434 ~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~-~~~~~~-~~~~~v~sv~~sp-~g~~l~sgs~d 510 (2435)
+.+++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+..+ .....+ .+...|.+++|+| ++++|++++.|
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 999999999999999999999999985 5778999999999999876 344444 5778899999999 89999999999
Q ss_pred CeEEEEECCCCcEEEEEecCC-CCEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEE
Q psy4869 511 NDIKMWDLRTNSVVQKLRGHS-DTVTGLSLSP--DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRC 587 (2435)
Q Consensus 511 g~V~lwD~~s~~~v~~l~~h~-~~V~~i~~sp--dg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v 587 (2435)
|.|++||+++++....+..|. ..|.+++|+| ++.+|++++.||.|++||++ ..+++..+.+|. ..+..+
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~----~~v~~~ 234 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGHM----SNVSFA 234 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----TTEEEEEEECCS----SCEEEE
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----CCcEEEEEcCCC----CCEEEE
Confidence 999999999988887777655 8999999999 99999999999999999998 356777887775 478999
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCE-EEEEECCCcEEEecCCCccccCcceeecC
Q psy4869 588 AWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPI-IMSASSDKTIYLGESPLHCDKAGSILRSG 666 (2435)
Q Consensus 588 ~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~-Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 666 (2435)
+|+|+|++|++|+.||.|++||..+++.+..+..|...|.+++|+|++.. +++++.|+.+.+|++.....
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 305 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP--------- 305 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC---------
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc---------
Confidence 99999999999999999999999999999999999999999999999873 24444566677777641000
Q ss_pred ceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccc
Q psy4869 667 KGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDK 746 (2435)
Q Consensus 667 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~ 746 (2435)
.+.+.+. +
T Consensus 306 -------------------------------------------------------~~~~~~~--------g--------- 313 (814)
T 3mkq_A 306 -------------------------------------------------------TLSLDPV--------G--------- 313 (814)
T ss_dssp -------------------------------------------------------CEEECSS--------S---------
T ss_pred -------------------------------------------------------eeEECCC--------C---------
Confidence 0000000 0
Q ss_pred cceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccc
Q psy4869 747 HRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTI 826 (2435)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (2435)
+.+.....+..
T Consensus 314 --~~~~~~~~~~~------------------------------------------------------------------- 324 (814)
T 3mkq_A 314 --KLVWSGGKNAA------------------------------------------------------------------- 324 (814)
T ss_dssp --EEEEECCTTSC-------------------------------------------------------------------
T ss_pred --CEEEECccccc-------------------------------------------------------------------
Confidence 00000000000
Q ss_pred cccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEecCC
Q psy4869 827 KTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACAS 906 (2435)
Q Consensus 827 ~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~~ 906 (2435)
...+... ...+. ..+ ..+..+
T Consensus 325 -----~~~~~~~--------------------------~~~~~-~~~---------------------~~~~~~------ 345 (814)
T 3mkq_A 325 -----ASDIFTA--------------------------VIRGN-EEV---------------------EQDEPL------ 345 (814)
T ss_dssp -----TTCEEEE--------------------------ECCSC-CCC---------------------CSSSCB------
T ss_pred -----ceeeeee--------------------------ecccc-ccc---------------------ccCccc------
Confidence 0000000 00000 000 000000
Q ss_pred cEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcC
Q psy4869 907 QVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYL 986 (2435)
Q Consensus 907 ~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~ 986 (2435)
.............+.+++|+|+|++|++++ +|.+.+|++...... +...+.+++|+|++
T Consensus 346 --------~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg------- 404 (814)
T 3mkq_A 346 --------SLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDS------- 404 (814)
T ss_dssp --------CCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTS-------
T ss_pred --------eeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCC-------
Confidence 000001112344567899999999999988 899999997654332 34578899999986
Q ss_pred CcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCC---CEEEEEECCCc
Q psy4869 987 PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS---KLLAVSLLDTT 1063 (2435)
Q Consensus 987 p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg---~~Lavg~~dg~ 1063 (2435)
..|++++.||.|++|+.- ..+...+.+++|+|+| .+|++++.++.
T Consensus 405 ---~~la~~~~~g~v~l~~~~-----------------------------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~ 452 (814)
T 3mkq_A 405 ---NSYALIDETGQIKYYKNF-----------------------------KEVTSWSVPMHSAIDRLFSGALLGVKSDGF 452 (814)
T ss_dssp ---SCEEEECTTCCEEEEETT-----------------------------EECTTCCCCCSSCCCEEECSSSEEEEETTE
T ss_pred ---CeEEEEeCCCcEEEEECC-----------------------------CCccceEEcCCcCccceecceEEEEecCCE
Confidence 589999999999999631 1123456678899998 68888888999
Q ss_pred EEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEE------ECCCcEEEEEcc-----------------CCceeEEE
Q psy4869 1064 VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG------SGDRTVKVWGLD-----------------YGDCHKSL 1120 (2435)
Q Consensus 1064 V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sg------s~Dg~I~vWd~~-----------------t~~~~~~l 1120 (2435)
|++||+.+++.+..+..|.. .+.|+|+|++|+++ +.++.+.+|.-. .......+
T Consensus 453 v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (814)
T 3mkq_A 453 VYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVL 529 (814)
T ss_dssp EEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEE
T ss_pred EEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeee
Confidence 99999999999999988865 89999999999999 555555555321 00111222
Q ss_pred eccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy4869 1121 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1200 (2435)
Q Consensus 1121 ~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd 1200 (2435)
......+.+..|. +..++.....+.+..+. .+ .... +.....++..+.|.+++..++....++.++.|+
T Consensus 530 ~~~~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~-~~~~------~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 598 (814)
T 3mkq_A 530 YELSESITSGKWV--GDVFIFTTATNRLNYFV--GG-KTYN------LAHYTKEMYLLGYLARDNKVYLADREVHVYGYE 598 (814)
T ss_dssp EEECSCCSEEEEE--TTEEEEECTTSEEEEEE--TT-EEEE------EEECSSCCEEEEEEGGGTEEEEECTTCCEEEEE
T ss_pred eEeccEEEeeEEe--CCEEEEEcCCCeEEEEe--CC-eeEE------EEECCccEEEEEEEecCCEEEEEcCCCCEEEEE
Confidence 2212334455554 33333333233333322 11 1111 123455677777778889999988999999998
Q ss_pred cc
Q psy4869 1201 LD 1202 (2435)
Q Consensus 1201 ~~ 1202 (2435)
+.
T Consensus 599 l~ 600 (814)
T 3mkq_A 599 IS 600 (814)
T ss_dssp CC
T ss_pred EC
Confidence 65
|
| >3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=430.63 Aligned_cols=215 Identities=26% Similarity=0.395 Sum_probs=165.7
Q ss_pred ccccccCCCCCCCCCcccccccccc----cCccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFAE----IPNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRT 2211 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~~----~~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~ 2211 (2435)
..|.++|||+|||+++++....... ............+||++||||+ +|+|+||||||.|||||
T Consensus 110 g~N~FaDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DWR~-----~g~VtpVkdQG~CGSCW------- 177 (363)
T 3tnx_A 110 GLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQ-----KGAVTPVKNQGSCGSAW------- 177 (363)
T ss_dssp CSCTTTTSCHHHHHHHHSCSSCSCCCCSSSSSSCCCCCSCCCCCSCEEGGG-----GTCCCCCCBCCSSBCHH-------
T ss_pred eccccccCCHHHHHHHhcccccccccccccccccccCcccCCCCcceeccc-----CCCCCCCccCCcCCchh-------
Confidence 3466789999999877664322111 1111111233457999999999 89999999999999999
Q ss_pred cccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhh
Q psy4869 2212 AGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAA 2291 (2435)
Q Consensus 2212 ~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~ 2291 (2435)
|||++++||++++|+++..+. ||+|+|+ ||.. .+.||+||++..
T Consensus 178 -------------------------AFsa~~alE~~~~i~tg~~~~--LSeQ~Lv----dC~~-----~~~GC~GG~~~~ 221 (363)
T 3tnx_A 178 -------------------------AFSAVSTIESIIKIRTGNLNE--YSEQELL----DCDR-----RSYGCNGGYPWS 221 (363)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----HHCT-----TSCTTBCCCHHH
T ss_pred -------------------------hhhhcccHHHHHHHHcCCCCC--cCHHHHh----cccC-----CCCCCCCCChHH
Confidence 999999999999999998876 9999999 7764 246899999999
Q ss_pred HHHHHHHcCccCCCcccCCCCCcccccc---------------------------CcccceeecccCCcccccceeeEEE
Q psy4869 2292 AWMYWINAGLVDGGDYGTHDVSMGRYIE---------------------------GIGHAASVMGSSNPEVNNFEKVIRL 2344 (2435)
Q Consensus 2292 a~~~~~~~Gi~~~~~y~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 2344 (2435)
||+|++++||++|.+|||.+.+..+... ..+++.+.+......|..|+++++.
T Consensus 222 a~~yi~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~e~~l~~~v~~gPvsvai~a~~~~F~~Y~sGVy~ 301 (363)
T 3tnx_A 222 ALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFV 301 (363)
T ss_dssp HHHHHHHTCBCBTTTSCCCSSCCCCCGGGGCSCSBCCCEEEEECSSCHHHHHHHHTTSCEEEEECCCSHHHHTEEEEEEC
T ss_pred HHhHHHhcCccccccCCCcCcCCCcccCCCCCceeeccceEEcchhhHHHHHHHHHcCCcEEEEEecchhhhCCCCCEEC
Confidence 9999999999999999997654221100 0123333333344457788887765
Q ss_pred EecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC----cccccccceeE
Q psy4869 2345 YSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV----NMCSIEDSVMA 2407 (2435)
Q Consensus 2345 ~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~----n~cgi~~~~~~ 2407 (2435)
..|+. .+||||+|||||+ +|||||||||+.|||+|||||+||. |+|||++.+.+
T Consensus 302 ~~~~~----~lnHaV~iVGyG~-----~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~~a~y 359 (363)
T 3tnx_A 302 GPCGN----KVDHAVAAVGYGP-----NYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 359 (363)
T ss_dssp CCCCS----CCCEEEEEEEEET-----TEEEEECSBCTTSTBTTEEEEECCSCCSSCGGGTTSCEEE
T ss_pred CCCCC----CCCeEEEEEEcCC-----CcEEEEeCCCCccccCcEEEEEcCCCCCCCcCCccceeee
Confidence 55543 3579999999995 4999999999999999999999987 45999998774
|
| >3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=439.40 Aligned_cols=198 Identities=36% Similarity=0.724 Sum_probs=155.6
Q ss_pred CCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhh
Q psy4869 2172 EAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQ 2251 (2435)
Q Consensus 2172 ~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~ 2251 (2435)
.+||++||||++||+| |+|+||||||.||||| |||++++||++++|+
T Consensus 62 ~~lP~s~DwR~~~~~c-~~vtpVkdQg~CGSCW--------------------------------AFsa~~ale~~~~i~ 108 (317)
T 3pbh_A 62 LKLPASFDAREQWPQC-PTIKEIRDQGSCGSCW--------------------------------AFGAVEAISDRICIH 108 (317)
T ss_dssp CCCCSSEEHHHHCTTC-GGGTCCCBCCSSCCHH--------------------------------HHHHHHHHHHHHHHH
T ss_pred cCCCCCEechhccCCC-CCcCCccccCCccchH--------------------------------HHHHHHHHHHHHHHH
Confidence 5799999999999998 5799999999999999 999999999999999
Q ss_pred cCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcc-------cCCCCC---------cc
Q psy4869 2252 SKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDY-------GTHDVS---------MG 2315 (2435)
Q Consensus 2252 ~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y-------~~~~~~---------~~ 2315 (2435)
+++.....||+|+|+ ||... ..+.||+||++..||+|++++||++|++| ||.... ..
T Consensus 109 ~~~~~~~~LSeq~Lv----dC~~~---~~~~GC~GG~~~~A~~yi~~~Gi~te~~Y~~~~~c~PY~~~~c~~~~~~~~~~ 181 (317)
T 3pbh_A 109 TNAHVSVEVSAEDLL----TCCGS---MCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 181 (317)
T ss_dssp TTTSCCCCBCHHHHH----HHSCT---TTBCGGGCBCHHHHHHHHHHTCEEBBCSTTCCCBSSCCCSCCCCCCCTTCCSC
T ss_pred hCCCCcccCCHHHHH----Hhccc---cCCCCCCCCCHHHHHHHHHHhCCCcchhccCCCCCcCcccCcccccccCcCCC
Confidence 886333449999999 77631 23468999999999999999999999888 996310 00
Q ss_pred c----------------c--------------------ccCcccceeecccCCc------ccccceeeEEEEecCCCcCc
Q psy4869 2316 R----------------Y--------------------IEGIGHAASVMGSSNP------EVNNFEKVIRLYSCEGSINP 2353 (2435)
Q Consensus 2316 ~----------------~--------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 2353 (2435)
+ + ...++..+...+|+.+ .|..|+++++...|+ ..
T Consensus 182 C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~~~---~~ 258 (317)
T 3pbh_A 182 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTG---EM 258 (317)
T ss_dssp CCSCCCCCCCCCSCCSSCCSCGGGSEECBCCCEEECSCHHHHHHHHHHHCCEEEEEEEEGGGGGEEEEEECCCSC---CE
T ss_pred CCCcCCCCcccccccCCCccceeeeeeeeeecccCCcHHHHHHHHHHHCCCEEEEEEecccccCCCCcEEccCCC---CC
Confidence 0 0 0011112223455544 355566655433332 22
Q ss_pred ccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEeecC
Q psy4869 2354 RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAKLE 2413 (2435)
Q Consensus 2354 ~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~~~ 2413 (2435)
.++|||+|||||++ +|++|||||||||++|||+|||||+||.|+||||+.+++++|+++
T Consensus 259 ~~~HaV~iVGyG~~-~g~~YWivkNSWG~~WGe~GY~ri~rg~n~CgI~~~~~a~~p~~d 317 (317)
T 3pbh_A 259 MGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 317 (317)
T ss_dssp EEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBCCC
T ss_pred CCCEEEEEEEEEEe-CCeeEEEEEcCCCCCcCCCcEEEEEcCCCcccCCCceEeeecCCC
Confidence 45899999999975 799999999999999999999999999999999999999999864
|
| >3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-43 Score=440.19 Aligned_cols=234 Identities=22% Similarity=0.364 Sum_probs=154.4
Q ss_pred cccccCCCCCCCCCccccccccc-c--cCccCC-CCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcc
Q psy4869 2137 EKLSANEDPEEFPNEDVFEHTFA-E--IPNIDH-SNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTA 2212 (2435)
Q Consensus 2137 e~~~~~~~~~ef~~~~~~~~~~~-~--~~~~~~-~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~ 2212 (2435)
.+.++|||.|||+++++...... . ...... ......+||++||||+++ +.++|+||||||.|||||
T Consensus 166 ~n~faDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~~--g~~~VtpVkdQG~CGSCW-------- 235 (441)
T 3pdf_A 166 YMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVH--GINFVSPVRNQASCGSCY-------- 235 (441)
T ss_dssp ----------------------------------------CCCSCEETTCBT--TBCCSCCCCBCTTSBCHH--------
T ss_pred ccccccCCHHHHHHHhCCCcccccccccCccccccccccccCCCCEECCcCC--CCCccCcccccCCCchHH--------
Confidence 46789999999998775322110 0 001111 122345799999999942 235899999999999999
Q ss_pred ccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhH
Q psy4869 2213 GLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAA 2292 (2435)
Q Consensus 2213 ~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a 2292 (2435)
|||++++||++++|++++.....||+|+|+ ||.. .+.||+||++..+
T Consensus 236 ------------------------AFsa~~alE~~~~i~tg~~~~~~LSeQ~Lv----dC~~-----~~~GC~GG~~~~a 282 (441)
T 3pdf_A 236 ------------------------SFASMGMLEARIRILTNNSQTPILSPQEVV----SCSQ-----YAQGCEGGFPYLI 282 (441)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTSCCCCBCHHHHH----HHCT-----TSCTTBCCCHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHhccCCCccccCHHHHH----hhcc-----CCCCCCCCchhHH
Confidence 999999999999999998766569999999 7764 2578999999987
Q ss_pred -HHHHHHcCccCCCcccCCCCCccccc------------------------cCcccceeecccCCc------ccccceee
Q psy4869 2293 -WMYWINAGLVDGGDYGTHDVSMGRYI------------------------EGIGHAASVMGSSNP------EVNNFEKV 2341 (2435)
Q Consensus 2293 -~~~~~~~Gi~~~~~y~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~------~~~~~~~~ 2341 (2435)
|+|++++||++|.+|||......+.. ..++.++...+|+.+ .|..|+++
T Consensus 283 a~~yi~~~Gi~tE~~yPY~~~~~~C~~~~~~~~~~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~~~F~~Y~sG 362 (441)
T 3pdf_A 283 AGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKG 362 (441)
T ss_dssp TTHHHHHTCBCBGGGSCCCSSCCCSCCCSSCCCBCEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEEECCCGGGGGCCSS
T ss_pred HHHHHHhcCCCcHHHeeecccCCCCCCccccceeeeccEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEecccccccCCc
Confidence 89999999999999999764322110 011122233455444 45556665
Q ss_pred EEEEecCCC-cC--cccceEEEEEEeccC-CCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEeecC
Q psy4869 2342 IRLYSCEGS-IN--PRYIHSVKIIGWGKS-SQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAKLE 2413 (2435)
Q Consensus 2342 ~~~~~~~~~-~~--~~~~Hav~iVGyg~~-~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~~~ 2413 (2435)
++...+... .+ ..++|||+|||||++ ++|++|||||||||+.|||+|||||+||.|+||||++++++.|.+.
T Consensus 363 Vy~~~~~~~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI~s~~~a~~P~~~ 438 (441)
T 3pdf_A 363 IYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPK 438 (441)
T ss_dssp EECCC---CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCCEEEEECCC
T ss_pred eEecCCCCcccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCCCccCCCCceEEeeccCC
Confidence 543222111 11 247899999999986 4799999999999999999999999999999999999999988653
|
| >3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=421.16 Aligned_cols=221 Identities=22% Similarity=0.405 Sum_probs=165.8
Q ss_pred cccccccCCCCCCCCCcccccccc--c-cc--CccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcC
Q psy4869 2135 HSEKLSANEDPEEFPNEDVFEHTF--A-EI--PNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQP 2209 (2435)
Q Consensus 2135 ~~e~~~~~~~~~ef~~~~~~~~~~--~-~~--~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~ 2209 (2435)
...|.++|||.|||++ ++..... . .. ........ ..+||++||||+ + +|+||||||.|||||
T Consensus 74 lg~N~FaDlt~eEf~~-~~g~~~~~~~~~~~~~~~~~~~~-~~~lP~~~DwR~-----~-~vtpVkdQg~CGSCW----- 140 (329)
T 3qt4_A 74 KAMNQFGDMSKEEFLA-YVNRGKAQKPKHPENLRMPYVSS-KKPLAASVDWRS-----N-AVSEVKDQGQCGSSW----- 140 (329)
T ss_dssp ECCCGGGGCCHHHHHH-HHHHTCCC------CCEEECCCC-CSCCCSCEECTT-----T-SCCCCCBCCSSBCHH-----
T ss_pred EeccccccCCHHHHHH-hcCCcccccccccccccccccCC-ccCCCCCEEccc-----c-ccCCCccCCCCcChH-----
Confidence 3557788999999987 5432211 0 00 00111111 147999999999 7 899999999999999
Q ss_pred CccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCCh
Q psy4869 2210 RTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDS 2289 (2435)
Q Consensus 2210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~ 2289 (2435)
|||++++||++++++++.++. ||+|+|+ ||... +++.||+||++
T Consensus 141 ---------------------------AFaa~~alE~~~~i~~g~~~~--LSeQ~Lv----dC~~~---~g~~GC~GG~~ 184 (329)
T 3qt4_A 141 ---------------------------SFSTTGAVEGQLALQRGRLTS--LSEQNLI----DCSSS---YGNAGCDGGWM 184 (329)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----HHCGG---GTCCTTBCCCH
T ss_pred ---------------------------HHHHHHHHHHHHHHHcCCccc--CCHHHHH----Hhccc---cCCCCCCCCCh
Confidence 999999999999999998766 9999999 77642 34679999999
Q ss_pred hhHHHHHHHcCccCCCcccCCCCCcccc--------------------ccCcccceeecccCCc------ccccceeeEE
Q psy4869 2290 AAAWMYWINAGLVDGGDYGTHDVSMGRY--------------------IEGIGHAASVMGSSNP------EVNNFEKVIR 2343 (2435)
Q Consensus 2290 ~~a~~~~~~~Gi~~~~~y~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~ 2343 (2435)
..||+|++++||++|.+|||......+. +..++.++...+|+.+ .|..|+++++
T Consensus 185 ~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~GVy 264 (329)
T 3qt4_A 185 DSAFSYIHDYGIMSESAYPYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLF 264 (329)
T ss_dssp HHHHHHHHHSCBCBTTTSCCCSSCCCCCCCGGGCCBCCSEEEECCTTCHHHHHHHHHHTCCEEEEECCCGGGTTEEEEEE
T ss_pred hHHHHHHHHcCCCcHHHeeeecCCCCCCCCcccceEEeceEEEecCCCHHHHHHHHHhCCCEEEEEecChhhhhccCcee
Confidence 9999999999999999999976532221 0011112222344433 4666666554
Q ss_pred EE-ecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2344 LY-SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2344 ~~-~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
.. .|. ...++|||+|||||++ +|++|||||||||+.|||+|||||+||. |+|||++.+.+.
T Consensus 265 ~~~~c~---~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~yp 327 (329)
T 3qt4_A 265 YDQTCN---QSDLNHGVLVVGYGSD-NGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAASYP 327 (329)
T ss_dssp CCSSCC---SSCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTTTCEEE
T ss_pred ecCCCC---CCcCCEEEEEEEEEee-CCccEEEEEeCCCCcccCCcEEEEEeCCCCccCCCCceeEe
Confidence 32 232 2357899999999975 7899999999999999999999999998 999999988743
|
| >3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=422.58 Aligned_cols=222 Identities=24% Similarity=0.425 Sum_probs=166.1
Q ss_pred ccccccCCCCCCCCCccccccccc----ccCccCCCC----CCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCC
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFA----EIPNIDHSN----QTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSH 2207 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~----~~~~~~~~~----~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~ 2207 (2435)
..|.++|||.|||++.++...... ....+.... ....+||++||||+ +|+|+||||||.|||||
T Consensus 70 g~N~FaDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~-----~g~vtpVkdQg~CGSCW--- 141 (331)
T 3qj3_A 70 GVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRD-----QGMVSPVKNQGSCGSSW--- 141 (331)
T ss_dssp CCSTTTTCCHHHHHHHHSCCCCCSSTTTTCEEECSGGGGTCCSSCCCCSSEEGGG-----GTCSCCCCBCCSSCCHH---
T ss_pred cccccccCCHHHHHHHhccccccccccccCcccccccccccccccCCCcceeccc-----CCccCCCccCcccchhh---
Confidence 557788999999987665322111 000111110 02347999999999 89999999999999999
Q ss_pred cCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCC--CcCccCCccceecccCCCCCCCCCCCCCCCC
Q psy4869 2208 QPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKG--QVKPILSPQHLICSCTNCTRMHTKTPMSMCM 2285 (2435)
Q Consensus 2208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~--~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~ 2285 (2435)
|||++++||++++|+++. .+. ||+|+|+ ||... +.||+
T Consensus 142 -----------------------------AFaa~~alE~~~~i~~g~~~~~~--LSeQ~Lv----dC~~~-----~~GC~ 181 (331)
T 3qj3_A 142 -----------------------------AFSSTGAIESQMKIANGAGYDSS--VSEQQLV----DCVPN-----ALGCS 181 (331)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHCTTSCCC--BCHHHHH----HHCTT-----SCGGG
T ss_pred -----------------------------HHHHHHHHHHHHHHHhCCCcccC--cCHHHHh----hhccC-----CCCCC
Confidence 999999999999999998 554 9999999 88752 57899
Q ss_pred CCChhhHHHHHHHc-CccCCCcccCCCCCccccc--------------------cCcccceeecccCCcc------cccc
Q psy4869 2286 GGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI--------------------EGIGHAASVMGSSNPE------VNNF 2338 (2435)
Q Consensus 2286 gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~------~~~~ 2338 (2435)
||++..||+|++++ ||++|.+|||......+.. ..++.++...+|+.+. |..|
T Consensus 182 GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y 261 (331)
T 3qj3_A 182 GGWMNDAFTYVAQNGGIDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSY 261 (331)
T ss_dssp CCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCTTSEEECCSEEEEESSCCHHHHHHHHHHHCCEEEEECCCTTGGGE
T ss_pred CCCHHHHHHHHHHcCCcCcccccCccCCCCCCCCCcccceeEeeEEEEeCCCCHHHHHHHHHhCCCEEEEEEcccccccc
Confidence 99999999999998 9999999999765422210 0111122223444332 6666
Q ss_pred eeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2339 EKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2339 ~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
+++++.. ..+....++|||+|||||++ +|++|||||||||+.|||+|||||+||. |+|||++++.+.
T Consensus 262 ~~Gvy~~--~~c~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p 329 (331)
T 3qj3_A 262 SGGVYYN--PTCETNKFTHAVLIVGYGNE-NGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVP 329 (331)
T ss_dssp EEEEECC--TTCCSSCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEE
T ss_pred cCceEeC--CCCCCCcCCEEEEEEEEecc-CCceEEEEEcCCCCCcCCCCEEEEEcCCCCccCcCCceeee
Confidence 6654432 22222357899999999975 7899999999999999999999999998 999999988743
|
| >1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=419.73 Aligned_cols=223 Identities=24% Similarity=0.389 Sum_probs=165.0
Q ss_pred ccccccCCCCCCCCCcccccccccccCccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFAEIPNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLK 2215 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~ 2215 (2435)
..|.++|||.|||++.++...................+||++||||+ +|+|+||||||.|||||
T Consensus 59 g~N~F~Dlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~lP~~~DwR~-----~g~vtpVkdQg~CGSCW----------- 122 (316)
T 1cs8_A 59 AMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWRE-----KGYVTPVKNQGQCGSCW----------- 122 (316)
T ss_dssp CCCTTTTCCHHHHHHHHCCBCCCCCSCCEECCCCTTCCCCSCEEGGG-----GTCCCCCCBCCSSSCHH-----------
T ss_pred ccCccCCCCHHHHHHHhcCCCCCccccCccccCccccCCCCcEecCC-----CCCcCCCCcccCCccHH-----------
Confidence 44678899999997654432211100000111122346999999999 89999999999999999
Q ss_pred cceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHH
Q psy4869 2216 GLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMY 2295 (2435)
Q Consensus 2216 ~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~ 2295 (2435)
|||++++||++++|+++..+. ||+|+|+ ||... +++.||+||++..||+|
T Consensus 123 ---------------------AFsa~~alE~~~~i~~g~~~~--LSeq~lv----dC~~~---~g~~gC~GG~~~~a~~y 172 (316)
T 1cs8_A 123 ---------------------AFSATGALEGQMFRKTGRLIS--LSEQNLV----DCSGP---QGNEGCNGGLMDYAFQY 172 (316)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----HHCGG---GTCCGGGCBCHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcCCCcC--cCHHHHH----Hhccc---cCCCCCCCCCHHHHHHH
Confidence 999999999999999987655 9999999 77641 24679999999999999
Q ss_pred HH-HcCccCCCcccCCCCCccccc-------------------cCcccceeecccCCc-------ccccceeeEEEEe-c
Q psy4869 2296 WI-NAGLVDGGDYGTHDVSMGRYI-------------------EGIGHAASVMGSSNP-------EVNNFEKVIRLYS-C 2347 (2435)
Q Consensus 2296 ~~-~~Gi~~~~~y~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~ 2347 (2435)
++ +.||++|.+|||......+.. ..++.++...||+.+ .|..|+++++... |
T Consensus 173 i~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c 252 (316)
T 1cs8_A 173 VQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC 252 (316)
T ss_dssp HHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCCEEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCTTC
T ss_pred HHHhCCcCchhccCCCCCCCCcCCCCccceeEeccEEEeCCCHHHHHHHHHhcCCEEEEEecCChhhccccCceECCCCC
Confidence 97 679999999999765322210 011112222345443 3556666544322 4
Q ss_pred CCCcCcccceEEEEEEec---cCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeE
Q psy4869 2348 EGSINPRYIHSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMA 2407 (2435)
Q Consensus 2348 ~~~~~~~~~Hav~iVGyg---~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~ 2407 (2435)
+. ..++|||+||||| ++++|++|||||||||+.|||+|||||.||. |+|||++.+.+
T Consensus 253 ~~---~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~ 313 (316)
T 1cs8_A 253 SS---EDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASY 313 (316)
T ss_dssp CS---SCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEE
T ss_pred CC---CCCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCcccCCEEEEECCCCCccCccceeeE
Confidence 32 3578999999999 6547899999999999999999999999998 89999998774
|
| >1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=422.54 Aligned_cols=221 Identities=22% Similarity=0.378 Sum_probs=162.7
Q ss_pred ccccccCCCCCCCCCccccccccc-ccCc-cCCCCCCCCC-CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFA-EIPN-IDHSNQTDEA-IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTA 2212 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~-~~~~-~~~~~~~~~~-lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~ 2212 (2435)
..|.++|||.|||++.++...... .... .........+ ||++||||+ +|+|+||||||.|||||
T Consensus 59 g~N~FaDlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~-----~g~vtpVkdQg~CGSCW-------- 125 (314)
T 1by8_A 59 AMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRK-----KGYVTPVKNQGQCGSCW-------- 125 (314)
T ss_dssp CCCTTSSSCHHHHHHHSCCCCCCSCCCCSSSSSBCCCCSSCCCSCCBSTT-----TTCSCCCCBCCSSSCHH--------
T ss_pred cccccccCCHHHHHHHhccCCCCcccccCCccccccccccCCCCeEeCCC-----CCCCCCcccCCCCCCcH--------
Confidence 346678999999976554322111 0000 0111111223 999999999 89999999999999999
Q ss_pred ccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhH
Q psy4869 2213 GLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAA 2292 (2435)
Q Consensus 2213 ~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a 2292 (2435)
|||++++||++++|+++..+. ||+|+|+ ||.. ++.||+||++..|
T Consensus 126 ------------------------AFs~~~alE~~~~i~~g~~~~--LSeq~lv----dC~~-----~~~gC~GG~~~~a 170 (314)
T 1by8_A 126 ------------------------AFSSVGALEGQLKKKTGKLLN--LSPQNLV----DCVS-----ENDGCGGGYMTNA 170 (314)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----TTCT-----TSCGGGCCCSHHH
T ss_pred ------------------------HHHHHHHHHHHHHHhcCCCcc--cCHHHHH----HhcC-----CCCCCcCCCHHHH
Confidence 999999999999999887665 9999999 8874 4579999999999
Q ss_pred HHHHH-HcCccCCCcccCCCCCccccc--------------------cCcccceeecccCCcc-------cccceeeEEE
Q psy4869 2293 WMYWI-NAGLVDGGDYGTHDVSMGRYI--------------------EGIGHAASVMGSSNPE-------VNNFEKVIRL 2344 (2435)
Q Consensus 2293 ~~~~~-~~Gi~~~~~y~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 2344 (2435)
|+|++ +.||++|.+|||......+.. ..++.++...||+.+. |..|+++++.
T Consensus 171 ~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~ 250 (314)
T 1by8_A 171 FQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYY 250 (314)
T ss_dssp HHHHHHTTCBCBTTTSCCCSSCCCCCCCGGGCCBCCSCEEECCSSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEECBC
T ss_pred HHHHHHcCCcCcHhhCCCCCCCCCcCCCCccceeEECcEEEecCCCHHHHHHHHHHcCCEEEEEEeChHHhhhccCceec
Confidence 99998 569999999999764322210 0111122234555444 4445554332
Q ss_pred Ee-cCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2345 YS-CEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2345 ~~-~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
.. |+. ..++|||+|||||++ +|++|||||||||++|||+|||||.||. |+|||++.+.++
T Consensus 251 ~~~c~~---~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p 312 (314)
T 1by8_A 251 DESCNS---DNLNHAVLAVGYGIQ-KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 312 (314)
T ss_dssp CTTCCS---SCCCEEEEEEEEEEE-TTEEEEEEECSBTTTSTBTTEEEECCSSSCGGGTTSSCEEE
T ss_pred CCCCCC---CCCCeEEEEEEEecc-CCceEEEEEcCCCCCcCcCCEEEEEcCCCCcCCccCeeEEe
Confidence 21 332 257899999999976 7899999999999999999999999996 999999988743
|
| >2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-42 Score=417.61 Aligned_cols=223 Identities=23% Similarity=0.390 Sum_probs=163.2
Q ss_pred ccccccCCCCCCCCCccccccccc-ccCccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcccc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFA-EIPNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGL 2214 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~-~~~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~ 2214 (2435)
..|.++|||.|||++.++...... .............+||++||||+ +|+|+||||||.|||||
T Consensus 60 g~N~FaDlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~~lP~~~DwR~-----~g~vtpVkdQg~CGSCW---------- 124 (315)
T 2c0y_A 60 GMNHLGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWRE-----KGCVTEVKYQGSCGAAW---------- 124 (315)
T ss_dssp CCCGGGGCCHHHHHHHTTSBCCCCGGGSCBCC------CCCSCEETTT-----TTCCCCCCBCTTSCCHH----------
T ss_pred ccCccccCCHHHHHHHhcCCCCCccccCCccccCcccCCCCCeEecCC-----CCCcCCCcCcccCCCcH----------
Confidence 346788999999976554322111 00001111112346999999999 89999999999999999
Q ss_pred ccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHH
Q psy4869 2215 KGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWM 2294 (2435)
Q Consensus 2215 ~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~ 2294 (2435)
|||++++||++++|+++..+. ||+|+|+ ||.. ..+++.||+||++..||+
T Consensus 125 ----------------------Afs~~~alE~~~~i~~g~~~~--LSeq~lv----dC~~--~~~~~~gC~GG~~~~a~~ 174 (315)
T 2c0y_A 125 ----------------------AFSAVGALEAQLKLKTGKLVS--LSAQNLV----DCST--EKYGNKGCNGGFMTTAFQ 174 (315)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----HHSC--GGGTCCGGGCBCHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHhCCCcC--cCHHHHH----hhcc--cccCCCCCCCCCHHHHHH
Confidence 999999999999999987665 9999999 7762 012467999999999999
Q ss_pred HHHH-cCccCCCcccCCCCCccccc--------------------cCcccceeecccCCc-------ccccceeeEEEEe
Q psy4869 2295 YWIN-AGLVDGGDYGTHDVSMGRYI--------------------EGIGHAASVMGSSNP-------EVNNFEKVIRLYS 2346 (2435)
Q Consensus 2295 ~~~~-~Gi~~~~~y~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 2346 (2435)
|+++ .||++|.+|||......+.. ..++.++...||+.+ .|..|+++++...
T Consensus 175 yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~ 254 (315)
T 2c0y_A 175 YIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEP 254 (315)
T ss_dssp HHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTEEEEEECCT
T ss_pred HHHHhCCcCchhcCCCccCCCCcccCCcccccccCCeEEeCCCCHHHHHHHHHHcCCEEEEEecCchhhhccCCCcccCC
Confidence 9985 69999999999764322210 011112223345443 3555666544322
Q ss_pred -cCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2347 -CEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2347 -~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
|+. .++|||+|||||++ +|++|||||||||++|||+|||||.||. |+|||++.+.++
T Consensus 255 ~c~~----~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p 313 (315)
T 2c0y_A 255 SCTQ----NVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 313 (315)
T ss_dssp TCCS----CCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEE
T ss_pred CCCC----cCCEEEEEEEEeec-CCCcEEEEEcCCCCCcCCCcEEEEEcCCCCccCcCceeEEe
Confidence 432 57899999999976 7899999999999999999999999996 999999988743
|
| >1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=416.43 Aligned_cols=218 Identities=26% Similarity=0.374 Sum_probs=164.2
Q ss_pred ccccccCCCCCCCCCccccccccc-cc-C-ccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFA-EI-P-NIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTA 2212 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~-~~-~-~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~ 2212 (2435)
..|.++|||.|||+++++...... .. . ..........+||++||||+ +|+|+||||||.|||||
T Consensus 66 g~N~FaDlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~-----~g~vt~VkdQg~CGSCW-------- 132 (322)
T 1pci_A 66 GLNEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRK-----KGAVTPVRHQGSCGSCW-------- 132 (322)
T ss_dssp CSCTTTTSCHHHHHHHHCCCBCCCSSCCCCSEECCCCCCCCSCSCEETTT-----TTCCCCCCBCTTSCCHH--------
T ss_pred ecCccccCCHHHHHHHhcCCCCccccccccccccccccccCCCCeEeccc-----CCCCCCccccccCCccH--------
Confidence 345678999999977654322111 10 0 00011122346999999999 89999999999999999
Q ss_pred ccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhH
Q psy4869 2213 GLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAA 2292 (2435)
Q Consensus 2213 ~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a 2292 (2435)
|||++++||++++|+++..+. ||+|+|+ ||.. ++.||+||++..|
T Consensus 133 ------------------------AFaa~~alE~~~~i~~g~~~~--lSeq~lv----dC~~-----~~~gC~GG~~~~a 177 (322)
T 1pci_A 133 ------------------------AFSAVATVEGINKIRTGKLVE--LSEQELV----DCER-----RSHGCKGGYPPYA 177 (322)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----HSCT-----TSCGGGCBCHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHcCCccc--cCHHHHH----hhcC-----CCCCCCCCCHHHH
Confidence 999999999999999987766 9999999 7763 3578999999999
Q ss_pred HHHHHHcCccCCCcccCCCCCccccc----------cC-----------cccceeecccCCc-------ccccceeeEEE
Q psy4869 2293 WMYWINAGLVDGGDYGTHDVSMGRYI----------EG-----------IGHAASVMGSSNP-------EVNNFEKVIRL 2344 (2435)
Q Consensus 2293 ~~~~~~~Gi~~~~~y~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~~-------~~~~~~~~~~~ 2344 (2435)
|+|++++||++|.+|||......+.. .. ++.++ ..||+.+ .|..|+++++.
T Consensus 178 ~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~e~~l~~~l-~~GPV~v~i~~~~~~f~~Y~~Gvy~ 256 (322)
T 1pci_A 178 LEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAI-AKQPVSVVVESKGRPFQLYKGGIFE 256 (322)
T ss_dssp HHHHHHHCBCBTTTSCCCSSCCCCTTTTCCSCCBCCCCEEECCSSBHHHHHHHH-HHSCEEEEECTTCHHHHTEEEEEEC
T ss_pred HHHHHHhCCCchhhCCCCCCCCCCCCCCCCCceEEEeeEEEeCCCcHHHHHHHH-HHCCEEEEEecccccccccCCeEeC
Confidence 99999999999999999654321110 00 11111 1244433 45566776654
Q ss_pred EecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC----cccccccceeE
Q psy4869 2345 YSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV----NMCSIEDSVMA 2407 (2435)
Q Consensus 2345 ~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~----n~cgi~~~~~~ 2407 (2435)
..|+. .++|||+|||||++ +|++|||||||||+.|||+|||||.||. |+|||++.+.+
T Consensus 257 ~~c~~----~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~n~CgI~~~~~y 318 (322)
T 1pci_A 257 GPCGT----KVDGAVTAVGYGKS-GGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYY 318 (322)
T ss_dssp CSCCS----CCCEEEEEEEEEEE-TTEEEEEEECSBCSSSTBTTEEEEECCCSBSSCGGGGGGCCEE
T ss_pred CCCCC----CCCEEEEEEEEecc-CCccEEEEEeCCCCcccCCeEEEEEcCCCCCCCcCCcccceeE
Confidence 34543 36899999999976 6899999999999999999999999996 99999998874
|
| >1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=421.94 Aligned_cols=227 Identities=19% Similarity=0.320 Sum_probs=166.9
Q ss_pred ccccccCCCCCCCCCccccccccc----ccCccCCC---CCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFA----EIPNIDHS---NQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQ 2208 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~----~~~~~~~~---~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~ 2208 (2435)
..|.++|||.|||++.++...... ....+... .....+||++||||+ +|+|+||||||.|||||
T Consensus 45 g~N~F~Dlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~-----~g~vtpVkdQg~CGSCW---- 115 (312)
T 1xkg_A 45 AINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQ-----MRTVTPIRMQGGCGSAW---- 115 (312)
T ss_dssp CCCTTTTSCHHHHHHHHSBCHHHHHHHHHHHC-----CBCCCCSCCCSCEETTT-----TTCCCCCCBCCSSBCHH----
T ss_pred CCCcccCCCHHHHHHHhcCCCCccccccCCcccccccccccccccCCCcccccc-----CCCcCCccccCCCCccH----
Confidence 446788999999977443211100 00011100 001237999999999 89999999999999999
Q ss_pred CCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCC
Q psy4869 2209 PRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGD 2288 (2435)
Q Consensus 2209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~ 2288 (2435)
|||++++||++++|+++..+. ||+|+|+ ||.. ..||+||+
T Consensus 116 ----------------------------AFsa~~alE~~~~i~~g~~~~--LSeq~lv----dC~~------~~GC~GG~ 155 (312)
T 1xkg_A 116 ----------------------------AFSGVAATESAYLAYRDQSLD--LAEQELV----DCAS------QHGCHGDT 155 (312)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHCCCCC--BCHHHHH----HHTC------SSTTBCCC
T ss_pred ----------------------------HHHHHHHHHHHHHHHhCCCCC--cCHHHHH----hccC------CCCCCCCC
Confidence 999999999999999987655 9999999 7761 15899999
Q ss_pred hhhHHHHHHHcCccCCCcccCCCCCcccc-------------------ccCcccceee-cccCCccccccee-eEEEEec
Q psy4869 2289 SAAAWMYWINAGLVDGGDYGTHDVSMGRY-------------------IEGIGHAASV-MGSSNPEVNNFEK-VIRLYSC 2347 (2435)
Q Consensus 2289 ~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~-------------------~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 2347 (2435)
+..||+|++++||++|.+|||......+. ...++.++.. .||+.+.++.+.. .|+.|..
T Consensus 156 ~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~i~~y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y~~ 235 (312)
T 1xkg_A 156 IPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDG 235 (312)
T ss_dssp HHHHHHHHHHHCEEBGGGSCCCSSCCCCCCCSSCEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCS
T ss_pred HHHHHHHHHHcCCCccccCCccCCCCCCCCCCCceEEEeeEEEeCCCCHHHHHHHHHhcCCCEEEEEEecccccccccCC
Confidence 99999999999999999999965432221 0011222333 5676665554432 2333333
Q ss_pred CCCc------CcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEeecC
Q psy4869 2348 EGSI------NPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAKLE 2413 (2435)
Q Consensus 2348 ~~~~------~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~~~ 2413 (2435)
+.+. ... +|||+|||||++ +|++|||||||||++|||+|||||.|+.|+|||++.+.+++|..+
T Consensus 236 GVy~~~~c~~~~~-~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~n~CgI~~~~~~~~~~~~ 305 (312)
T 1xkg_A 236 RTIIQRDNGYQPN-YHAVNIVGYSNA-QGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVILGQT 305 (312)
T ss_dssp SSCBCCCCSSCCE-EEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEECTTC
T ss_pred cEEcCCCCCCCcC-ceEEEEEEEecc-CCceEEEEEeCCCCcccCCcEEEEEcCCCcccccceeEEeeccCC
Confidence 3221 124 899999999975 789999999999999999999999999999999999998777544
|
| >2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=415.01 Aligned_cols=222 Identities=24% Similarity=0.404 Sum_probs=163.1
Q ss_pred ccccccCCCCCCCCCcccc-ccccc-cc-CccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcc
Q psy4869 2136 SEKLSANEDPEEFPNEDVF-EHTFA-EI-PNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTA 2212 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~-~~~~~-~~-~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~ 2212 (2435)
..|.++|||.|||++.++. ..... .. ......... .+||++||||+ +|+|+||||||.|||||
T Consensus 52 g~N~F~Dlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~-~~lP~~~DwR~-----~g~vtpVkdQg~CGSCW-------- 117 (310)
T 2o6x_A 52 GLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANN-RAVPDKIDWRE-----SGYVTEVKDQGNCGSGW-------- 117 (310)
T ss_dssp CCCTTTTSCHHHHHHHHCCCCCCGGGGSCSSEECCC-----CCSCEEGGG-----GTCCCCCCBCCSSCCHH--------
T ss_pred eccccCCCCHHHHHHHhcCCCCCcccccccCCcccccc-CCCCCeEecCc-----CCCCCCcccCCCCCccH--------
Confidence 3466789999999765443 11111 00 000011111 26999999999 89999999999999999
Q ss_pred ccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhH
Q psy4869 2213 GLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAA 2292 (2435)
Q Consensus 2213 ~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a 2292 (2435)
|||++++||++++|+++..+. ||+|+|+ ||... +++.||+||++..|
T Consensus 118 ------------------------Afa~~~alE~~~~i~~g~~~~--LS~q~lv----dC~~~---~~~~gC~GG~~~~a 164 (310)
T 2o6x_A 118 ------------------------AFSTTGTMEGQYMKNERTSIS--FSEQQLV----DCSRP---WGNNGCGGGLMENA 164 (310)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHSSCCC--BCHHHHH----HHCGG---GTCCGGGCCCHHHH
T ss_pred ------------------------HHHhHHHHHHHHHHHhCCCcC--cCHHHHH----Hhhhc---cCCCCCCCCCHHHH
Confidence 999999999999999987665 9999999 77631 24679999999999
Q ss_pred HHHHHHcCccCCCcccCCCCCccccc--------------------cCcccceeecccCCc------ccccceeeEEEE-
Q psy4869 2293 WMYWINAGLVDGGDYGTHDVSMGRYI--------------------EGIGHAASVMGSSNP------EVNNFEKVIRLY- 2345 (2435)
Q Consensus 2293 ~~~~~~~Gi~~~~~y~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~- 2345 (2435)
|+|+++.||++|.+|||......+.. ..++.++...+|+.+ .|..|+++++..
T Consensus 165 ~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~Gvy~~~ 244 (310)
T 2o6x_A 165 YQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQSQ 244 (310)
T ss_dssp HHHHTTSCBCBTTTSCCCSSCCCCCCCGGGCCEEEEEEEEECSCCHHHHHHHHHHHCCEEEEECCCHHHHTEEEEEECCS
T ss_pred HHHHHHCCcCchhcCCCCCCCCCccCCCCCCceEeCeEEEeCCCCHHHHHHHHHhcCCeEEEEecchhhhhCCCceecCC
Confidence 99999889999999999764322210 011112223355443 355566654431
Q ss_pred ecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2346 ~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
.|+. ..++|||+|||||++ +|++|||||||||+.|||+|||||.||. |+|||++.+.++
T Consensus 245 ~c~~---~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cgi~~~~~~p 304 (310)
T 2o6x_A 245 TCSP---LRVNHAVLAVGYGTQ-GGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLP 304 (310)
T ss_dssp SCCT---TCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSEEEE
T ss_pred CCCC---CCCCEEEEEEEEecc-CCceEEEEEeCCCCccCCCcEEEEEcCCCCcCCccceeeEE
Confidence 2432 356899999999975 7899999999999999999999999998 899999987643
|
| >3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=407.82 Aligned_cols=200 Identities=34% Similarity=0.648 Sum_probs=155.0
Q ss_pred CCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhh
Q psy4869 2172 EAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQ 2251 (2435)
Q Consensus 2172 ~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~ 2251 (2435)
.+||++||||++|++| |+|+||||||.||||| |||++++||++++|+
T Consensus 5 ~~lP~~~D~R~~w~~~-~~vt~VkdQg~CGSCW--------------------------------Afa~~~ale~~~~i~ 51 (266)
T 3cbj_A 5 LKLPASFDAREQWPQC-PTIKEIRDQGSCGSAW--------------------------------AFGAVEAISDRICIH 51 (266)
T ss_dssp CCCCSCEEHHHHSTTC-GGGGCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHH
T ss_pred CCCCccCcchhccCCC-CcCCCCCCCCCcchHH--------------------------------HHHHHHHHHHHHHHH
Confidence 4699999999999997 5799999999999999 999999999999998
Q ss_pred cCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccC-------CCcccCCCC---------Ccc
Q psy4869 2252 SKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVD-------GGDYGTHDV---------SMG 2315 (2435)
Q Consensus 2252 ~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~-------~~~y~~~~~---------~~~ 2315 (2435)
+++.....||+|+|+ ||... +.+.||+||++..||+|++++|+++ |.+|||... ...
T Consensus 52 ~~~~~~~~LS~q~lv----dC~~~---~~~~gC~GG~~~~a~~y~~~~Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~~~~~ 124 (266)
T 3cbj_A 52 TNAHVSVEVSAEDLL----TCCGS---MCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPP 124 (266)
T ss_dssp TTTSCCCCBCHHHHH----HHCGG---GGBCTTBCBCHHHHHHHHHHTCBCBCCSTTCCCSSSCCCSCCCSCCCSCSSCC
T ss_pred hCCCCccccCHHHHH----hhccc---cCCCCCCCCCHHHHHHHHHHhCcCcCccccccccccCcccccccccccCCCCC
Confidence 865333449999999 77631 1246899999999999999999999 899999721 100
Q ss_pred c---------c---------------------------ccCcccceeecccCCc------ccccceeeEEEEecCCCcCc
Q psy4869 2316 R---------Y---------------------------IEGIGHAASVMGSSNP------EVNNFEKVIRLYSCEGSINP 2353 (2435)
Q Consensus 2316 ~---------~---------------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 2353 (2435)
+ . ...++..+...+|+.+ .|..|+++++...|+ ..
T Consensus 125 C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~~~~~---~~ 201 (266)
T 3cbj_A 125 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTG---EM 201 (266)
T ss_dssp CCSCCCCCCCCCSCCTTCCSCTGGGCBCBSCCEECCSCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCCSS---CE
T ss_pred CccccCCCccccccCCCCcceeeeeeeeeeeeEEeCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCeEEecCCC---Cc
Confidence 0 0 0001111222345443 345555554432222 22
Q ss_pred ccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEeecCcc
Q psy4869 2354 RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAKLEGI 2415 (2435)
Q Consensus 2354 ~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~~~~~ 2415 (2435)
.++|||+|||||++ +|++|||||||||+.|||+|||||.||.|+|||++.+++++|++++.
T Consensus 202 ~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgI~~~~~~~~p~~~~~ 262 (266)
T 3cbj_A 202 MGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQY 262 (266)
T ss_dssp EEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBCCCC-
T ss_pred cCCeEEEEEEeccc-CCceEEEEEcCCCCccCCCCEEEEEcCCCcccccCceEEEEeeccch
Confidence 45899999999975 78999999999999999999999999999999999999999998753
|
| >3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=403.34 Aligned_cols=193 Identities=37% Similarity=0.698 Sum_probs=150.0
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
+||++||||++||+| ++|+||||||.||||| |||++++||++++|++
T Consensus 2 ~lP~s~D~R~~~~~~-~~vtpVkdQg~CGSCW--------------------------------AFaa~~ale~~~~i~~ 48 (254)
T 3qsd_A 2 EIPSSFDSRKKWPRC-KSIATIRDQSRCGSCW--------------------------------AFGAVEAMSDRSCIQS 48 (254)
T ss_dssp CCCSCEEHHHHCTTC-GGGGCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHT
T ss_pred CCCCcCccccccCCC-CccCCCCCcccCccHH--------------------------------HHHHHHHHHHHHHHHh
Confidence 589999999999998 7899999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcc-------cCCC---------CCccc
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDY-------GTHD---------VSMGR 2316 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y-------~~~~---------~~~~~ 2316 (2435)
++.....||+|+|+ ||... .+.||+||++..||+|++++||++|++| ||.. ....+
T Consensus 49 ~~~~~~~LSeQ~lv----dC~~~----~~~GC~GG~~~~a~~yi~~~Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~~~C 120 (254)
T 3qsd_A 49 GGKQNVELSAVDLL----SCCES----CGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPC 120 (254)
T ss_dssp TTCCCCCBCHHHHH----HHCTT----SBCTTBCBCHHHHHHHHHHTCBCBCCCTTTCCSSSCCSSCCCBCSSCSSSCBC
T ss_pred CCCccccCCHHHHH----hhhcC----CCCCCCCCCHHHHHHHHHHcCCCcccccccCcCcCCcccccccccccCcCCCC
Confidence 74333349999999 66531 2368999999999999999999998888 9951 10000
Q ss_pred -------------------------------------cccCcccceeecccCCcc------cccceeeEEEEecCCCcCc
Q psy4869 2317 -------------------------------------YIEGIGHAASVMGSSNPE------VNNFEKVIRLYSCEGSINP 2353 (2435)
Q Consensus 2317 -------------------------------------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 2353 (2435)
....++..+...+|+.+. |..|+.+++...+. ..
T Consensus 121 ~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~~~~~---~~ 197 (254)
T 3qsd_A 121 GSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITG---ET 197 (254)
T ss_dssp CSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECCSCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCCSS---CE
T ss_pred cccccCCccccccccCCccceeeeeeeeeeeeEecCCcHHHHHHHHHHcCCEEEEEEeccccccccCCeeccCCC---CC
Confidence 000111122233454443 44455544322221 23
Q ss_pred ccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEe
Q psy4869 2354 RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEA 2410 (2435)
Q Consensus 2354 ~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~ 2410 (2435)
.++|||+|||||++ +|++|||||||||+.|||+|||||+||.|+||||+.+++++|
T Consensus 198 ~~~Hav~iVGyg~~-~g~~ywivkNSWG~~WG~~Gy~~i~rg~n~CgI~~~~~~~~p 253 (254)
T 3qsd_A 198 LGGHAIRIIGWGVE-NKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTAGRI 253 (254)
T ss_dssp EEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSSEEEEEC
T ss_pred CCCeEEEEEEEeec-CCeeEEEEEeCCCCCcccCCeEEEEcCCCeecCCCceEeecc
Confidence 45899999999975 789999999999999999999999999999999999999987
|
| >1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=385.89 Aligned_cols=188 Identities=25% Similarity=0.461 Sum_probs=147.0
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~vt~VkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (214)
T 1m6d_A 1 APPEWDWRS-----KGAVTKVKDQGMCGSCW--------------------------------AFSVTGNVEGQWFLNQG 43 (214)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcCcCCC-----CCCCCCCccCCCCchHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCccccc--------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI-------------- 2318 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~-------------- 2318 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++ |+++|.+|||......+..
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~~i~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~ 112 (214)
T 1m6d_A 44 TLLS--LSEQELL----DCDK-----MDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVE 112 (214)
T ss_dssp CCCC--BCHHHHH----HHCS-----SSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCCCGGGCCBCCSEEEE
T ss_pred CCcc--cCHHHHH----HhcC-----CCCCCCCCCHHHHHHHHHHhcCcccccCcCcCCCCCcCCCCcccceEEecCEEE
Confidence 7655 9999999 7764 24689999999999999986 8999999999754322110
Q ss_pred -----cCcccceeecccCCccc-----ccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCc
Q psy4869 2319 -----EGIGHAASVMGSSNPEV-----NNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG 2388 (2435)
Q Consensus 2319 -----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~G 2388 (2435)
..++..+...+|+.+.+ .+|+++++......+....++|||+|||||++ +|++|||||||||++|||+|
T Consensus 113 i~~~~~~ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~G 191 (214)
T 1m6d_A 113 LSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQR-SDVPFWAIKNSWGTDWGEKG 191 (214)
T ss_dssp CCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTT
T ss_pred eChHHHHHHHHHHhCCCEEEEEEechhhhcCCceecCCCCcCCCCcCCEEEEEEEEeec-CCcEEEEEEeCCCCCcccCc
Confidence 01112222345554443 45555543221000112246899999999975 78999999999999999999
Q ss_pred eEEEEeeCcccccccceeEEEe
Q psy4869 2389 LFKIRRGVNMCSIEDSVMAGEA 2410 (2435)
Q Consensus 2389 y~~i~r~~n~cgi~~~~~~~~~ 2410 (2435)
||||.||.|+|||++++.++++
T Consensus 192 y~~i~r~~n~Cgi~~~~~~~~~ 213 (214)
T 1m6d_A 192 YYYLHRGSGACGVNTMASSAVV 213 (214)
T ss_dssp EEEEESSSCGGGTTTTCEEEEC
T ss_pred EEEEEcCCCccccCceeEEEEe
Confidence 9999999999999999886653
|
| >8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=384.16 Aligned_cols=190 Identities=26% Similarity=0.498 Sum_probs=150.4
Q ss_pred CCCccccCccCCCCCC-CcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2174 IPETFDAREEWPQCKD-VIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~-~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
||++||||+ +| +|+||||||.||||| |||++++||++++|++
T Consensus 1 lP~~~DwR~-----~~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~ 43 (220)
T 8pch_A 1 YPPSMDWRK-----KGNFVSPVKNQGSCGSCW--------------------------------TFSTTGALESAVAIAT 43 (220)
T ss_dssp CCSCEEHHH-----HSSCSCCCCBCTTSCCHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCEecCc-----CCCcCCcccccCCCchHH--------------------------------HHHHHHHHHHHHHHHc
Confidence 799999999 77 899999999999999 9999999999999999
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCcccc--------------
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRY-------------- 2317 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~-------------- 2317 (2435)
+..+. ||+|+|+ ||... +++.||+||++..||+|++++ |+++|++|||......+.
T Consensus 44 ~~~~~--lS~q~l~----dc~~~---~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~ 114 (220)
T 8pch_A 44 GKMLS--LAEQQLV----DCAQN---FNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVA 114 (220)
T ss_dssp CCCCC--BCHHHHH----HHGGG---GTCCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECEEEEE
T ss_pred CCCCC--CCHHHHh----hCcCc---cCCCCCCCCCHHHHHHHHHHcCCcCcccccCccCCCCCCCCCCCcceEEeCCEE
Confidence 87766 9999999 77642 245789999999999999988 999999999976532211
Q ss_pred ------ccCcccceeecccCCcc------cccceeeEEEE-ecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCc
Q psy4869 2318 ------IEGIGHAASVMGSSNPE------VNNFEKVIRLY-SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGW 2384 (2435)
Q Consensus 2318 ------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~W 2384 (2435)
+..++.++...+|+.+. |..|+.+++.. .|... ...++|||+|||||++ +|++|||||||||+.|
T Consensus 115 ~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~~~~~~~-~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~W 192 (220)
T 8pch_A 115 NITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKT-PDKVNHAVLAVGYGEE-NGIPYWIVKNSWGPQW 192 (220)
T ss_dssp ECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEECCSSCCCS-TTTCCEEEEEEEEEEE-TTEEEEEEECSBCTTS
T ss_pred EeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCCcccCCcCCCC-CCcCCcEEEEEEEEcc-CCeeEEEEECCCCcCc
Confidence 01111222233554443 44555544322 12221 1257899999999965 7899999999999999
Q ss_pred CCCceEEEEeeCcccccccceeEEEee
Q psy4869 2385 GEQGLFKIRRGVNMCSIEDSVMAGEAK 2411 (2435)
Q Consensus 2385 G~~Gy~~i~r~~n~cgi~~~~~~~~~~ 2411 (2435)
||+|||||+||.|+|||++++.+++|.
T Consensus 193 Ge~Gy~~i~r~~n~cgi~~~~~~~~p~ 219 (220)
T 8pch_A 193 GMNGYFLIERGKNMCGLAACASYPIPL 219 (220)
T ss_dssp TBTTEEEEECSSCGGGTTTSCEEEEEC
T ss_pred ccCCEEEEEcCCCccccCCCceeEeec
Confidence 999999999999999999999988775
|
| >3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=380.34 Aligned_cols=183 Identities=26% Similarity=0.473 Sum_probs=144.8
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+.+
T Consensus 1 lP~~~Dwr~-----~g~vtpVkdQg~cGsCW--------------------------------Afa~~~ale~~~~i~~~ 43 (215)
T 3i06_A 1 APAAVDWRA-----RGAVTAVKDQGQCGSCW--------------------------------AFSAIGNVECQWFLAGH 43 (215)
T ss_dssp CCSEEEGGG-----GTCCCCCCBCCSSCCHH--------------------------------HHHHHHHHHHHHHHTTS
T ss_pred CCCcccCCc-----CCCCCCCCCCCCCccHH--------------------------------HHHHHHHHHHHHHHhCC
Confidence 799999999 89999999999999999 99999999999999887
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc---CccCCCcccCCCCCc---ccc----------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA---GLVDGGDYGTHDVSM---GRY---------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~---Gi~~~~~y~~~~~~~---~~~---------- 2317 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++ |+++|.+|||..... .+.
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~y~~~~~~gGi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i 112 (215)
T 3i06_A 44 PLTN--LSEQMLV----SCDK-----TDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112 (215)
T ss_dssp CCCC--CCHHHHH----HHCS-----SSCGGGCCCHHHHHHHHHHHSTTEEEC-CCSCCCCTTSCCCCCCCSSCCEEEEE
T ss_pred CCCc--cCHHHHh----ccCC-----CCCCCCCCCHHHHHHHHHHhccccccccCccCCcCCCCCCCccccCCcccceEe
Confidence 7665 9999999 7764 25689999999999999986 799999999975321 110
Q ss_pred ---------ccCcccceeecccCCc-----ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCC
Q psy4869 2318 ---------IEGIGHAASVMGSSNP-----EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQG 2383 (2435)
Q Consensus 2318 ---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~ 2383 (2435)
...++..+...+|+.+ .|..|+++++. .|. ...++|||+|||||++ +|++|||||||||++
T Consensus 113 ~~~~~v~~~~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~-~~~---~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~ 187 (215)
T 3i06_A 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT-SCV---SEQLDHGVLLVGYNDS-AAVPYWIIKNSWTTQ 187 (215)
T ss_dssp EEEEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEEC-SCC---CSCCCEEEEEEEEESS-SSSCEEEEECSBCTT
T ss_pred cceEEeCChHHHHHHHHHHCCCEEEEEEchHHhcCCCCccc-CCC---CCccCcEEEEEEEecc-CCcEEEEEECCCCCC
Confidence 0011111222334332 45667766542 232 2345899999999964 789999999999999
Q ss_pred cCCCceEEEEeeCcccccccceeEEE
Q psy4869 2384 WGEQGLFKIRRGVNMCSIEDSVMAGE 2409 (2435)
Q Consensus 2384 WG~~Gy~~i~r~~n~cgi~~~~~~~~ 2409 (2435)
|||+|||||+||.|+|||++++++++
T Consensus 188 WGe~Gy~~i~rg~n~cgi~~~~~~~~ 213 (215)
T 3i06_A 188 WGEEGYIRIAKGSNQCLVKEEASSAV 213 (215)
T ss_dssp STBTTEEEEESSSCGGGTTSSEEEEE
T ss_pred cccCceEEEecCCCeecCCCceeEEe
Confidence 99999999999999999999988654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=377.92 Aligned_cols=289 Identities=21% Similarity=0.369 Sum_probs=265.1
Q ss_pred eEecccCCcEEEEEECCC----CCEEEEEeCCCeEEEEecCCcee-eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 356 MLLEGHGGEIFCSKYHPD----GQYIASSGYDRQIFIWSVYGECE-NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspd----g~~Lasgs~Dg~I~iwd~~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
..+++|.+.|++++|+|+ +.+|++|+.|+.|+|||+..... ....+.+|...|.+++|++++.++++++.|+.|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 356799999999999985 67999999999999999876543 3456889999999999999999999999999999
Q ss_pred EEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec
Q psy4869 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI 509 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~ 509 (2435)
+||+++++.+..+..|...+.+++|+|++ .++++++.|+.|++||++.++....+ .+...+.+++|+|+|++|++|+.
T Consensus 106 lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 106 LWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp EEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence 99999999999999999999999999988 56788999999999999998887766 46678999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEE
Q psy4869 510 DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589 (2435)
Q Consensus 510 dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~ 589 (2435)
||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||++ ..+++..+.+|. ..|.+++|
T Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~h~----~~v~~~~~ 256 (321)
T 3ow8_A 185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ----HANLAGTLSGHA----SWVLNVAF 256 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT----TCCEEEEECCCS----SCEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC----CcceeEEEcCCC----CceEEEEE
Confidence 9999999999999999999999999999999999999999999999999998 356777888875 47899999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 590 SVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 590 spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+|+|++|++|+.|+.|++||+++++++..+.+|.+.|.+++|+|++++|++++.||.|++||.+
T Consensus 257 sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 257 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999975
|
| >3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=384.21 Aligned_cols=185 Identities=26% Similarity=0.483 Sum_probs=141.7
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~vtpVkdQg~cGSCW--------------------------------Afa~~~~le~~~~i~~~ 43 (222)
T 3u8e_A 1 APASIDWRK-----KGAVTSVKDQGACGMCW--------------------------------AFGATGAIEGIDAITTG 43 (222)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCCSCSSCT--------------------------------TTTHHHHHHHHHHHHHS
T ss_pred CCCcCcCCc-----CCCCCCcccCCCCccHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 799999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCccccc--------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI-------------- 2318 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~-------------- 2318 (2435)
..+. ||+|+|+ ||... +.||+||++..||+|++++ |+++|.+|||......+..
T Consensus 44 ~~~~--lS~q~l~----dC~~~-----~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~i~~~~~v 112 (222)
T 3u8e_A 44 RLIS--VSEQQIV----DCDTX-----XXXXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKPIAARIDGYTNV 112 (222)
T ss_dssp CCCC--BCHHHHH----HHCC-----------CCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCCCSCCCBCCCEEEEC
T ss_pred CCcc--cCHHHHH----hccCc-----ccccCCCCHHHHHHHHHHcCCccchhcCCCcccCCccccCCCCeEEEccEEEe
Confidence 8766 9999999 88752 5789999999999999999 9999999999754322110
Q ss_pred ----cCcccceeecccCCcc-------ccccee-eEEEE-ecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2319 ----EGIGHAASVMGSSNPE-------VNNFEK-VIRLY-SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2319 ----~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~-~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
..++.++ ..+|+.+. |..|+. +++.. .|... ...++|||+|||||++++|++|||||||||+.||
T Consensus 113 ~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~~Giy~~~~~~~~-~~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WG 190 (222)
T 3u8e_A 113 PNSSSALLDAV-AKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDD-PATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWG 190 (222)
T ss_dssp CSCHHHHHHHH-HHSCEEEEECCCSHHHHTCCCSSCBCCTTCCCC-GGGCCEEEEEEEEEESSTTCEEEEEECSBCTTST
T ss_pred CCcHHHHHHHH-hCCCEEEEEEecChhhhcEeCCceECCCcccCC-CCcCCEEEEEEEEeecCCCCcEEEEECCCCCCcc
Confidence 1111112 23555444 444444 44322 23221 1246899999999976448999999999999999
Q ss_pred CCceEEEEeeCc----ccccccceeEE
Q psy4869 2386 EQGLFKIRRGVN----MCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~n----~cgi~~~~~~~ 2408 (2435)
|+|||||+||.| +|||++++++.
T Consensus 191 e~Gy~~i~r~~~~~~g~Cgi~~~~~~p 217 (222)
T 3u8e_A 191 IDGYILIRRNTNRPDGVCAIDAWGSYP 217 (222)
T ss_dssp BTTEEEEECSCSCTTCGGGTTSSCEEE
T ss_pred cCCEEEEEcCCCCCCCcCCccccceEE
Confidence 999999999987 99999998743
|
| >3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=380.65 Aligned_cols=183 Identities=24% Similarity=0.475 Sum_probs=146.0
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++++++
T Consensus 1 lP~~~Dwr~-----~~~v~pvkdQg~cGsCW--------------------------------Afa~~~~~e~~~~~~~~ 43 (215)
T 3kwz_A 1 APDSVDYRK-----KGYVTPVKNQGQCGSCW--------------------------------AFSSVGALEGQLKKKTG 43 (215)
T ss_dssp CTTCEETTT-----TTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCCCccCc-----CCCCCCcccCCCCcHHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 799999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCcccc---------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRY--------------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~--------------- 2317 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++ |+++|.+|||......+.
T Consensus 44 ~~~~--lS~q~l~----dc~~-----~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~ 112 (215)
T 3kwz_A 44 KLLN--LSPQNLV----DCVS-----ENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYRE 112 (215)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCCEEE
T ss_pred CCcc--cCHHHHH----HhcC-----CCCCCCCCCHHHHHHHHHHhCCccccccCCCccCCCccccCCCCceeEecceEE
Confidence 7766 9999999 7764 35789999999999999988 999999999976532211
Q ss_pred -----ccCcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2318 -----IEGIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2318 -----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
+..++.++...+|+.+ .|..|+.+++.. ..+....++|||+|||||++ +|++|||||||||++||
T Consensus 113 v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~--~~~~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WG 189 (215)
T 3kwz_A 113 IPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYD--ESCNSDNLNHAVLAVGYGIQ-KGNKHWIIKNSWGENWG 189 (215)
T ss_dssp CCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECC--TTCCTTCCCEEEEEEEEEEE-TTEEEEEEECSBCTTST
T ss_pred eCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECC--CCCCCChhhCEEEEEEEecc-CCceEEEEECCcCcccc
Confidence 0111222223345443 345555544321 21212357899999999975 78999999999999999
Q ss_pred CCceEEEEeeC-cccccccceeE
Q psy4869 2386 EQGLFKIRRGV-NMCSIEDSVMA 2407 (2435)
Q Consensus 2386 ~~Gy~~i~r~~-n~cgi~~~~~~ 2407 (2435)
|+|||||+||. |+|||++++.+
T Consensus 190 ~~Gy~~i~r~~~n~Cgi~~~~~~ 212 (215)
T 3kwz_A 190 NKGYILMARNKNNACGIANLASF 212 (215)
T ss_dssp BTTEEEEESSSSSGGGTTSSCEE
T ss_pred cCCEEEEecCCCCccCcCCceee
Confidence 99999999998 99999998874
|
| >2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=384.54 Aligned_cols=186 Identities=27% Similarity=0.498 Sum_probs=146.0
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~v~pVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (220)
T 2xu3_A 1 APRSVDWRE-----KGYVTPVKNQGQCGSCW--------------------------------AFSATGALEGQMFRKTG 43 (220)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcEeCCC-----CCCCCCCcccCcccHHH--------------------------------HHHhHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHH-HcCccCCCcccCCCCCcccc---------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWI-NAGLVDGGDYGTHDVSMGRY--------------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~-~~Gi~~~~~y~~~~~~~~~~--------------- 2317 (2435)
..+. ||+|+|+ ||.. .+++.||+||++..||+|++ ++|+++|.+|||......+.
T Consensus 44 ~~~~--lS~q~l~----dC~~---~~g~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~ 114 (220)
T 2xu3_A 44 RLIS--LSEQNLV----DCSG---PQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVD 114 (220)
T ss_dssp CCCC--BCHHHHH----HHCT---TTTCCTTBCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCSEEEE
T ss_pred Ccee--cCHHHHH----hhcc---CCCCCCCCCCCHHHHHHHHHHhCCcccccccCCcccCcCccCCCCCcceeeeeEEE
Confidence 7655 9999999 7764 23467899999999999996 78999999999976432211
Q ss_pred ----ccCcccceeecccCCc-------ccccceeeEEEEe-cCCCcCcccceEEEEEEecc---CCCCcceEEEEccCCC
Q psy4869 2318 ----IEGIGHAASVMGSSNP-------EVNNFEKVIRLYS-CEGSINPRYIHSVKIIGWGK---SSQNEPYWLCTNSYNQ 2382 (2435)
Q Consensus 2318 ----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~Hav~iVGyg~---~~~g~~yWiikNSWG~ 2382 (2435)
+..++.++...+|+.+ .|..|+.+++... |+. ..++|||+|||||+ +++|++|||||||||+
T Consensus 115 v~~~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~~c~~---~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~ 191 (220)
T 2xu3_A 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSS---EDMDHGVLVVGYGFESTESDNNKYWLVKNSWGE 191 (220)
T ss_dssp CCSCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCS---SCCCEEEEEEEEEECCCSSSCCEEEEEECSBCT
T ss_pred eCCCHHHHHHHHHhcCCEEEEEeecCcccccccceEEcCCCCCC---CCCCeEEEEEEcCCccccCCCCcEEEEEeCCCC
Confidence 0111122223345443 3455555543221 332 35789999999993 3478999999999999
Q ss_pred CcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2383 GWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2383 ~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
.|||+|||||.|+. |+|||++++..+
T Consensus 192 ~WG~~Gy~~i~~~~~n~Cgi~~~~~~p 218 (220)
T 2xu3_A 192 EWGMGGYVKMAKDRRNHCGIASAASYP 218 (220)
T ss_dssp TSTBTTEEEEECSSSSGGGTTTSCEEE
T ss_pred CcccCcEEEEecCCCCcCCccccceee
Confidence 99999999999998 899999998743
|
| >1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=379.05 Aligned_cols=184 Identities=26% Similarity=0.490 Sum_probs=146.4
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
+||++||||+ +|+|+||||||.||||| |||++++||++++|++
T Consensus 1 ~lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~ 43 (229)
T 1s4v_A 1 TVPASVDWRK-----KGAVTSVKDQGQCGSCW--------------------------------AFSTIVAVEGINQIKT 43 (229)
T ss_dssp CCCSCEETTT-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCCEeCCC-----CCCCCCCccCccchHHH--------------------------------HHHHHHHHHHHHHHHc
Confidence 4899999999 89999999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCccccc----------c--
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI----------E-- 2319 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~----------~-- 2319 (2435)
+..+. ||+|+|+ ||... .+.||+||++..||+|++++ |+++|.+|||......+.. .
T Consensus 44 g~~~~--lS~q~l~----dC~~~----~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y 113 (229)
T 1s4v_A 44 NKLVS--LSEQELV----DCDTD----QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGH 113 (229)
T ss_dssp SCCCC--BCHHHHH----HHCCS----SCCTTBCBCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCHHHHTCCCBCCCEE
T ss_pred CCCCC--cCHHHHH----hhCCC----CCCCCCCCCHHHHHHHHHHhCCccccccCCccCCCCCCCCCCCCCcEEEeeeE
Confidence 87665 9999999 77641 35789999999999999998 9999999999654322110 0
Q ss_pred ---------CcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCC
Q psy4869 2320 ---------GIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQG 2383 (2435)
Q Consensus 2320 ---------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~ 2383 (2435)
.++.++ ..+|+.+ .|..|+.+++...|+. .++|||+|||||++++|++|||||||||+.
T Consensus 114 ~~v~~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~Giy~~~c~~----~~~HaV~iVGyg~~~~g~~yWivkNSWG~~ 188 (229)
T 1s4v_A 114 ENVPENDENALLKAV-ANQPVSVAIDAGGSDFQFYSEGVFTGSCGT----ELDHGVAIVGYGTTIDGTKYWTVKNSWGPE 188 (229)
T ss_dssp EECCTTCHHHHHHHH-HHSCEEEEECCCSHHHHTCCSSEECCCCCC----CCCEEEEEEEEEECTTSCEEEEEECSBCTT
T ss_pred EEeCCccHHHHHHHH-hcCCEEEEEEeCcHHHhhCCCcEECCCCCC----CCCeEEEEEEeccccCCCCEEEEEeCCCCC
Confidence 011111 1234332 4556666655433443 358999999999865589999999999999
Q ss_pred cCCCceEEEEeeC----cccccccceeEE
Q psy4869 2384 WGEQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2384 WG~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
|||+|||||.|+. |+|||+.++.+.
T Consensus 189 WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p 217 (229)
T 1s4v_A 189 WGEKGYIRMERGISDKEGLCGIAMEASYP 217 (229)
T ss_dssp STBTTEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred ccCCcEEEEEcCCCCCCCcCcccccceee
Confidence 9999999999985 899999987743
|
| >3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-40 Score=384.06 Aligned_cols=186 Identities=25% Similarity=0.478 Sum_probs=146.5
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++++++
T Consensus 2 lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~~ 44 (218)
T 3ovx_A 2 LPDSVDWRE-----KGCVTEVKYQGSCGACW--------------------------------AFSAVGALEAQLKLKTG 44 (218)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCTTSCCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccc-----CCCCCCCccCCCCccHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 899999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHH-cCccCCCcccCCCCCcccc---------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWIN-AGLVDGGDYGTHDVSMGRY--------------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~-~Gi~~~~~y~~~~~~~~~~--------------- 2317 (2435)
..+. ||+|+|+ ||... .+++.||+||++..||+|+++ .|+++|.+|||......+.
T Consensus 45 ~~~~--lS~q~l~----~c~~~--~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~ 116 (218)
T 3ovx_A 45 KLVS--LSAQNLV----DCSTE--KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTE 116 (218)
T ss_dssp CCCC--BCHHHHH----HHSCG--GGTCCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCEEEE
T ss_pred Cccc--cCHHHhe----eccCC--cCCCCCCCCCCHHHHHHHHHHhCCcCcccccCccCCCCcccCCCccceeeeccEEE
Confidence 7766 9999999 77621 234679999999999999976 6999999999976432211
Q ss_pred -----ccCcccceeecccCCcc-------cccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2318 -----IEGIGHAASVMGSSNPE-------VNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2318 -----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
+..++.++...+|+.+. |..|+.+++.. ..+ ...++|||+|||||++ +|++|||||||||+.||
T Consensus 117 ~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~--~~~-~~~~~HaV~iVGyg~~-~g~~ywivkNSWG~~WG 192 (218)
T 3ovx_A 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYE--PSC-TQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFG 192 (218)
T ss_dssp CCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECC--TTC-CSCCCEEEEEEEEEEE-TTEEEEEEECSBCTTST
T ss_pred eCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceecC--CCC-CcccCcEEEEEEEecc-CCceEEEEECCCCCccc
Confidence 01112222233454443 44555544322 111 3457899999999975 68999999999999999
Q ss_pred CCceEEEEeeC-cccccccceeEE
Q psy4869 2386 EQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
|+|||||.||. |+|||++++.+.
T Consensus 193 ~~Gy~~i~~~~~n~cgi~~~~~~p 216 (218)
T 3ovx_A 193 EEGYIRMARNKGNHCGIASFPSYP 216 (218)
T ss_dssp BTTEEEEECSSSSGGGTTTSCEEE
T ss_pred cCCEEEEecCCCCcccccCceeee
Confidence 99999999998 999999988743
|
| >1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=374.19 Aligned_cols=181 Identities=28% Similarity=0.461 Sum_probs=144.8
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~v~pVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (216)
T 1ppo_A 1 LPENVDWRK-----KGAVTPVRHQGSCGSCW--------------------------------AFSAVATVEGINKIRTG 43 (216)
T ss_dssp CCSCEETTT-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcCcCCC-----CCCCCCCccCCcCccHH--------------------------------HHHHHHHHHHHHHHccC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccccc----------c----
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYI----------E---- 2319 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~----------~---- 2319 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++|+++|.+|||......+.. .
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~ 112 (216)
T 1ppo_A 44 KLVE--LSEQELV----DCER-----RSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGR 112 (216)
T ss_dssp CCCC--BCHHHHH----HHCS-----SSCTTBCCCHHHHHHHHHHHCBCBTTTSCCCSSCCCCCGGGCCSCCBCCCEEEE
T ss_pred Ccee--cCHHHHH----hccC-----CCCCCCCCCHHHHHHHHHHhCcCccccCCccCCCCCcCCCCCCCceEEeccEEE
Confidence 7665 9999999 7764 357899999999999999999999999999654321110 0
Q ss_pred -------CcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2320 -------GIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2320 -------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
.++.++. .+|+.+ .|..|+++++...|+. .++|||+|||||++ +|++|||||||||++||
T Consensus 113 v~~~~~~~i~~~l~-~GPV~v~~~~~~~~f~~Y~~Giy~~~~~~----~~~HaV~iVGyg~~-~g~~ywivkNSWG~~WG 186 (216)
T 1ppo_A 113 VQPNNEGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIFEGPCGT----KVDHAVTAVGYGKS-GGKGYILIKNSWGTAWG 186 (216)
T ss_dssp CCSSCHHHHHHHHH-HSCEEEEECCCSHHHHHCCSSEECCSCCS----CCCEEEEEEEEEEE-TTEEEEEEECSBCSSST
T ss_pred ECCCCHHHHHHHHH-hCCEEEEEecCChhhhhcCCceECCCCCC----CCCEEEEEEEeecc-CCccEEEEEeCCCCCcc
Confidence 0111111 244433 3455666554333433 35899999999975 68999999999999999
Q ss_pred CCceEEEEeeC----cccccccceeEE
Q psy4869 2386 EQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
|+|||||.|+. |+|||+.+++++
T Consensus 187 ~~Gy~~i~~~~~~~~n~Cgi~~~~~~p 213 (216)
T 1ppo_A 187 EKGYIRIKRAPGNSPGVCGLYKSSYYP 213 (216)
T ss_dssp BTTEEEEECCCSSSSCGGGTTSCCEEE
T ss_pred cCcEEEEEcCCCCCCCcCccccceeeE
Confidence 99999999985 899999988743
|
| >2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=382.00 Aligned_cols=189 Identities=25% Similarity=0.462 Sum_probs=148.3
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
+||++||||+ +|+|+||||||.||||| |||++++||++++|++
T Consensus 3 ~lP~~~DwR~-----~g~vtpVkdQg~CGSCW--------------------------------AFaa~~alE~~~~i~~ 45 (262)
T 2fo5_A 3 DLPPSVDWRQ-----KGAVTGVKDQGKCGSCW--------------------------------AFSTVVSVEGINAIRT 45 (262)
T ss_dssp CCCSCEETTT-----TTCCCCCCBCTTSCCHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCC-----CCCCCCCCCCCCCchHH--------------------------------HHHHHHHHHHHHHHHc
Confidence 5999999999 89999999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCcccccc------C-----
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYIE------G----- 2320 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~~------~----- 2320 (2435)
+..+. ||+|+|+ ||... .+.||+||++..||+|++++ |+++|++|||......+... .
T Consensus 46 g~~~~--LSeQ~lv----dC~~~----~~~GC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~i 115 (262)
T 2fo5_A 46 GSLVS--LSEQELI----DCDTA----DNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHI 115 (262)
T ss_dssp SCCCC--BCHHHHH----HHCCS----SCCGGGCBCHHHHHHHHHHTTCEEBTTTSCCCSSCCCCCHHHHHHHCCCEECC
T ss_pred CCCCC--cCHHHHH----hhcCC----CCCCCCCCCHHHHHHHHHHcCCcCchhcCCCcCccCccCCcccccCCceeEEe
Confidence 87665 9999999 77642 35789999999999999998 99999999997643221100 0
Q ss_pred -------------cccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccC
Q psy4869 2321 -------------IGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSY 2380 (2435)
Q Consensus 2321 -------------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSW 2380 (2435)
++.++ ..+|+.+ .|..|+++++...|+. ..+|||+|||||++++|++||||||||
T Consensus 116 ~~y~~v~~~~e~~ik~al-~~GPV~v~i~~~~~~f~~Y~sGVy~~~c~~----~~~HaV~IVGyg~~~~G~~YWivkNSW 190 (262)
T 2fo5_A 116 DGHQDVPANSEEDLARAV-ANQPVSVAVEASGKAFMFYSEGVFTGECGT----ELDHGVAVVGYGVAEDGKAYWTVKNSW 190 (262)
T ss_dssp CEEEECCTTCHHHHHHHH-HHSCEEEEECCCSHHHHTCCSSEECCCCCC----CCCEEEEEEEEEECTTSCEEEEEECSB
T ss_pred ceEEEcCCchHHHHHHHH-HhCCEEEEEecChHHHhccCCceECCCCCC----cCCEEEEEEEEcccCCCceEEEEEeCC
Confidence 00111 1144433 3555666655434443 358999999999865689999999999
Q ss_pred CCCcCCCceEEEEeeC----cccccccceeEEEeecCcc
Q psy4869 2381 NQGWGEQGLFKIRRGV----NMCSIEDSVMAGEAKLEGI 2415 (2435)
Q Consensus 2381 G~~WG~~Gy~~i~r~~----n~cgi~~~~~~~~~~~~~~ 2415 (2435)
|++|||+|||||.|+. |+|||+..+. +|.+...
T Consensus 191 G~~WGe~GY~ri~r~~n~~~~~CgI~~~~~--~p~~~~~ 227 (262)
T 2fo5_A 191 GPSWGEQGYIRVEKDSGASGGLCGIAMEAS--YPVKTYS 227 (262)
T ss_dssp CTTSTBTTEEEEESSCSCTTCGGGTTTSCE--EEECCC-
T ss_pred CCCCCCCeEEEEEcCCCCCCCccceeeeee--EEEecCC
Confidence 9999999999999986 4599998876 5555443
|
| >1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=375.29 Aligned_cols=181 Identities=24% Similarity=0.431 Sum_probs=144.7
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~v~pVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (218)
T 1yal_A 1 YPQSIDWRA-----KGAVTPVKNQGACGSCW--------------------------------AFSTIATVEGINKIVTG 43 (218)
T ss_dssp CCSCEETTT-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcCcCCC-----CCCCCCCccCccchhHH--------------------------------HHHHHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcccccc--------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYIE-------------- 2319 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~~-------------- 2319 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++|+++|.+|||......+...
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~ 112 (218)
T 1yal_A 44 NLLE--LSEQELV----DCDK-----HSYGCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKR 112 (218)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHCBCBTTTSCCCSSCCCCCGGGCCSCCBCCSEEEE
T ss_pred Cccc--cCHHHHH----HhcC-----CCCCCCCCCHHHHHHHHHHcCCCccccccccCCCCCcccCcCCCceEEEeeEEE
Confidence 7665 9999999 7762 3578999999999999999999999999996543211100
Q ss_pred -------CcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2320 -------GIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2320 -------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
.++.++. .+|+.+ .|..|+++++...|+. .++|||+|||||++ +|++|||||||||+.||
T Consensus 113 v~~~~~~~i~~~l~-~GPV~v~i~~~~~~f~~Y~~Giy~~~~~~----~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WG 186 (218)
T 1yal_A 113 VPSNCETSFLGALA-NQPLSVLVEAGGKPFQLYKSGVFDGPCGT----KLDHAVTAVGYGTS-DGKNYIIIKNSWGPNWG 186 (218)
T ss_dssp CCSSBHHHHHHHHT-TSCEEEEECCCSHHHHTCCSSEECCSCCS----CCCEEEEEEEEEEE-TTEEEEEEECSBCTTST
T ss_pred eCCCCHHHHHHHHH-hCCEEEEEeccchhccccCCceECCCCCC----CCCEEEEEEEeecc-CCccEEEEEeCCCCCcc
Confidence 0111111 244433 3555666654333433 36899999999975 68999999999999999
Q ss_pred CCceEEEEeeC----cccccccceeEE
Q psy4869 2386 EQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
|+|||||.|+. |+|||+.+++++
T Consensus 187 e~Gy~~i~~~~~~~~~~Cgi~~~~~~p 213 (218)
T 1yal_A 187 EKGYMRLKRQSGNSQGTCGVYKSSYYP 213 (218)
T ss_dssp BTTEEEEECCCSBSCCGGGTTSSCEEE
T ss_pred cCcEEEEECCCCCCCCccccccceeeE
Confidence 99999999985 899999988743
|
| >1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=373.10 Aligned_cols=181 Identities=27% Similarity=0.478 Sum_probs=145.2
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~v~~VkdQg~cGsCW--------------------------------Afa~~~~~e~~~~i~~g 43 (215)
T 1iwd_A 1 LPSFVDWRS-----KGAVNSIKNQKQCGSCW--------------------------------AFSAVAAVESINKIRTG 43 (215)
T ss_dssp CCSCEEGGG-----GTCSCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcEeCCC-----CCCCCCcccCCCCchHH--------------------------------HHHHHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCccccc--------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI-------------- 2318 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~-------------- 2318 (2435)
..+. ||+|+|+ ||... +.||+||++..||+|++++ |+++|.+|||......+..
T Consensus 44 ~~~~--lS~q~l~----dC~~~-----~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~i~~~~~v 112 (215)
T 1iwd_A 44 QLIS--LSEQELV----DCDTA-----SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRV 112 (215)
T ss_dssp CCCC--BCHHHHH----HHCTT-----SCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCTTCCCCBCCCEEEEC
T ss_pred Cccc--cChhHeE----ECcCC-----CCCCCCCCHHHHHHHHHHhCCcccccccCccCCCCCCCCCCCceEEeCcEEEe
Confidence 7665 9999999 77642 5789999999999999987 9999999999754321110
Q ss_pred -----cCcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCC
Q psy4869 2319 -----EGIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGE 2386 (2435)
Q Consensus 2319 -----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~ 2386 (2435)
..++.++ ..+|+.+ .|..|+++++...|+. .++|||+|||||++ +|++|||||||||++|||
T Consensus 113 ~~~~~~~ik~~l-~~GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~----~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe 186 (215)
T 1iwd_A 113 TRNNESALQSAV-ASQPVSVTVEAAGAPFQHYSSGIFTGPCGT----AQNHGVVIVGYGTQ-SGKNYWIVRNSWGQNWGN 186 (215)
T ss_dssp CTTCHHHHHHHH-HHSCEEEEECCCSHHHHTCCSSEECCCCCC----CCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTB
T ss_pred CCCcHHHHHHHH-HhCCEEEEEecCCcchhhcCCceECCCCCC----cCCEEEEEEEEecc-CCccEEEEEeCCCCCcCC
Confidence 0011111 1244433 3556666654444442 46899999999975 789999999999999999
Q ss_pred CceEEEEeeC----cccccccceeEE
Q psy4869 2387 QGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2387 ~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
+|||||.|+. |+|||+.++.+.
T Consensus 187 ~Gy~~i~~~~~~~~~~Cgi~~~~~~p 212 (215)
T 1iwd_A 187 QGYIWMERNVASSAGLCGIAQLPSYP 212 (215)
T ss_dssp TTEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred CcEEEEEcCCCCCCCCCCccccceee
Confidence 9999999997 899999987743
|
| >1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=375.79 Aligned_cols=182 Identities=24% Similarity=0.480 Sum_probs=145.2
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
+||++||||+ +|+|+||||||.||||| |||++++||++++|++
T Consensus 2 ~lP~~~DwR~-----~~~v~~VkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~ 44 (221)
T 1cqd_A 2 DLPDSIDWRE-----NGAVVPVKNQGGCGSCW--------------------------------AFSTVAAVEGINQIVT 44 (221)
T ss_dssp -CCSCEETTT-----TTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCcCcCCC-----CCCcCCcccCCCCccHH--------------------------------HHHHHHHHHHHHHHhc
Confidence 5899999999 89999999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCccccc-------------
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI------------- 2318 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~------------- 2318 (2435)
+..+. ||+|+|+ ||... +.||+||++..||+|++++ |+++|.+|||......+..
T Consensus 45 ~~~~~--lS~q~l~----dC~~~-----~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~y~ 113 (221)
T 1cqd_A 45 GDLIS--LSEQQLV----DCTTA-----NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYE 113 (221)
T ss_dssp SCCCC--BCHHHHH----HHCTT-----SCTTBCCCHHHHHHHHHHHTSBCBTTTSCCCSSCCCCCSSSCCCSBCCSEEE
T ss_pred CCeee--eccceeE----ECCCC-----CCCCCCCCHHHHHHHHHHhCCccccccCCccCCCCCcCCCCCCceEEeccEE
Confidence 87765 9999999 77642 5789999999999999987 9999999999654321110
Q ss_pred -------cCcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCc
Q psy4869 2319 -------EGIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGW 2384 (2435)
Q Consensus 2319 -------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~W 2384 (2435)
..++.++ ..+|+.+ .|..|+.+++...|+. .++|||+|||||++ +|++|||||||||+.|
T Consensus 114 ~v~~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~Giy~~~~~~----~~~HaV~iVGyg~~-~g~~yWivkNSWG~~W 187 (221)
T 1cqd_A 114 NVPSHNEQSLQKAV-ANQPVSVTMDAAGRDFQLYRSGIFTGSCNI----SANHALTVVGYGTE-NDKDFWIVKNSWGKNW 187 (221)
T ss_dssp ECCSSCHHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEECCCCCC----CCCEEEEEEEEEEE-TTEEEEEEECSBCTTS
T ss_pred EeCCchHHHHHHHH-HhCCEEEEEeccCcccccccCccccCCCCC----cCCeEEEEEEEccc-CCCcEEEEEeCCCCCc
Confidence 0011111 1244433 3556666655444442 46899999999975 7899999999999999
Q ss_pred CCCceEEEEeeC----cccccccceeEE
Q psy4869 2385 GEQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2385 G~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
||+|||||.|+. |+|||+.++.+.
T Consensus 188 Ge~Gy~~i~r~~~~~~~~Cgi~~~~~~p 215 (221)
T 1cqd_A 188 GESGYIRAERNIENPDGKCGITRFASYP 215 (221)
T ss_dssp TBTTEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred ccCCEEEEEcCCCCCCcccceeeeeeEE
Confidence 999999999983 899999988743
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=376.56 Aligned_cols=290 Identities=21% Similarity=0.392 Sum_probs=263.2
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
.+...+.+|.+.|++++|+|+|++|++|+.||.|++||+.... ....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 3456799999999999999999999999999999999987653 456778899999999999999999999999999999
Q ss_pred ECCCC----ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEE
Q psy4869 433 DLEKG----QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 433 d~~tg----~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sg 507 (2435)
|+.++ +....+.+|...+.++.|.+++ .+++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++|
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 99875 3567788999999999998876 4889999999999999999888777 478899999999999999999
Q ss_pred ecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEE
Q psy4869 508 GIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRC 587 (2435)
Q Consensus 508 s~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v 587 (2435)
+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||++. .+.+..+..+. ....+.++
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~----~~~~~~~~~~~--~~~~v~~~ 276 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA----DQELMTYSHDN--IICGITSV 276 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----TEEEEEECCTT--CCSCEEEE
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC----CcEEEEEccCC--cccceEEE
Confidence 9999999999999999999999999999999999999999999999999999984 44555554221 22468999
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 588 AWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 588 ~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
+|+|+|++|++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+|++.+|++|+.||.|++||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=391.67 Aligned_cols=288 Identities=26% Similarity=0.469 Sum_probs=268.9
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
...+.+|.++|++++|+|++.+|++|+.||.|++||+..+. ....+.+|.+.|.+++|++++++|++|+.|+.|++||+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 45788999999999999999999999999999999987653 44678899999999999999999999999999999999
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeE
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDI 513 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V 513 (2435)
.+++.+..+.+|...|.++.|+|++ .++++|+.|+.|++||++++.++..+ .|...|.+++|+|++++|++|+.||.|
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999999999999999999987 46789999999999999999888777 577889999999999999999999999
Q ss_pred EEEECCCCcEEEEEecCCCCEEEEEEcCC--------------------CCEEEEEECCCcEEEEEcCCCCCCCceEEEE
Q psy4869 514 KMWDLRTNSVVQKLRGHSDTVTGLSLSPD--------------------GSYILSNAMDNTVRIWDIRPYVPGERCVKVM 573 (2435)
Q Consensus 514 ~lwD~~s~~~v~~l~~h~~~V~~i~~spd--------------------g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~ 573 (2435)
++||+++++....+.+|...|.+++|+|+ |.+|++|+.|++|++||++ .+.++..+
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~----~~~~~~~~ 334 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS----TGMCLMTL 334 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT----TTEEEEEE
T ss_pred EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC----CCceEEEE
Confidence 99999999999999999999999999996 6799999999999999998 46788888
Q ss_pred eCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 574 SGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 574 ~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
.+|. ..|.+++|+|+|++|++|+.|+.|++||+++++++..+.+|...|++++|+|++++|++|+.||+|++|++
T Consensus 335 ~~h~----~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 335 VGHD----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCS----SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ECCC----CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 8875 47899999999999999999999999999999999999999999999999999999999999999999986
|
| >2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=377.38 Aligned_cols=186 Identities=25% Similarity=0.430 Sum_probs=146.9
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
+||++||||+ +|+|+||||||.||||| |||++++||++++|++
T Consensus 1 ~lP~~~DwR~-----~g~vtpVkdQg~CGsCW--------------------------------Afa~~~~lE~~~~i~~ 43 (246)
T 2b1m_A 1 DAPESWDWSK-----KGVITKVKFQGQCGSGW--------------------------------AFSATGAIEAAHAIAT 43 (246)
T ss_dssp -CCSCEEGGG-----TTCCCCCCBCCSSCCHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCC-----CCCCCCcccCCCCchHH--------------------------------HHHHHHHHHHHHHHHc
Confidence 4899999999 89999999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCcccc---------ccC--
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRY---------IEG-- 2320 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~---------~~~-- 2320 (2435)
+..+. ||+|+|+ ||.. .+.||+||++..||+|++++ |+++|.+|||......+. +..
T Consensus 44 g~~~~--LS~q~lv----dC~~-----~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~y~ 112 (246)
T 2b1m_A 44 GNLVS--LSEQELI----DCVD-----ESEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYG 112 (246)
T ss_dssp SCCCC--BCHHHHH----HHCT-----TSBTTTBCCHHHHHHHHHHTTCBCBTTTSCCCSSCCCCCGGGCCCCBCCSEEE
T ss_pred CCCcc--cCHHHHH----hhcC-----CCCCCCCCCHHHHHHHHHHhCCcCccccccccCCCCcCcCCCCCCceeEcCcc
Confidence 87665 9999999 7763 35689999999999999998 999999999965432110 000
Q ss_pred ------------cccceee---cccCCc-----ccccceeeEEEE-ecCCCcCcccceEEEEEEeccCCCCcceEEEEcc
Q psy4869 2321 ------------IGHAASV---MGSSNP-----EVNNFEKVIRLY-SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNS 2379 (2435)
Q Consensus 2321 ------------~~~~~~~---~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNS 2379 (2435)
++.++.. .+|+.+ .|..|+++++.. .|+... .++|||+|||||++ +|++|||||||
T Consensus 113 ~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Giy~~~~c~~~~--~~~HaV~iVGyg~~-~g~~yWivkNS 189 (246)
T 2b1m_A 113 VQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGNCSSPY--GINHFVLIVGYGSE-DGVDYWIAKNS 189 (246)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSEECCTTCCSSC--CCCEEEEEEEEEEE-TTEEEEEEECS
T ss_pred eeeecCCChHHHHHHHHHhhccCCCEEEEEEcchhhcccceeecCCCCCCCC--cCceEEEEEEEecc-CCceEEEEEeC
Confidence 1111112 145443 456666665433 344321 26899999999976 78999999999
Q ss_pred CCCCcCCCceEEEEeeC----cccccccceeEEE
Q psy4869 2380 YNQGWGEQGLFKIRRGV----NMCSIEDSVMAGE 2409 (2435)
Q Consensus 2380 WG~~WG~~Gy~~i~r~~----n~cgi~~~~~~~~ 2409 (2435)
||++|||+|||||.|+. |+|||++.+++.+
T Consensus 190 WG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p~ 223 (246)
T 2b1m_A 190 WGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223 (246)
T ss_dssp BCTTSTBTTEEEEECCSSCTTCGGGTTSEEEEEE
T ss_pred CCCcccCCcEEEEEcCCCCCCccccccceeeEEE
Confidence 99999999999999998 9999999877544
|
| >3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=371.42 Aligned_cols=177 Identities=28% Similarity=0.483 Sum_probs=142.1
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++++++
T Consensus 1 lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~~ 43 (213)
T 3ioq_A 1 IPTSIDWRQ-----KGAVTPVRNQGGCGSCW--------------------------------TFSSVAAVEGINKIVTG 43 (213)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccc-----CCCCCCCCcCCCChhHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 799999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccccc----------cC---
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYI----------EG--- 2320 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~----------~~--- 2320 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++|+++|++|||......+.. ..
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~ 112 (213)
T 3ioq_A 44 QLLS--LSEQELL----DCER-----RSYGCRGGFPLYALQYVANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGR 112 (213)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHCEEBGGGSCCCSSCCCCCGGGCCSCEECCCEEEE
T ss_pred CCcc--cCHHHhh----hhcC-----CCCCCCCCCHHHHHHHHHHcCCCchhccCcCCCCCCCCCCccCCceEEeccEEE
Confidence 8766 9999999 7774 356899999999999999999999999999764322211 00
Q ss_pred -------cccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCC
Q psy4869 2321 -------IGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGE 2386 (2435)
Q Consensus 2321 -------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~ 2386 (2435)
+...+...+|+.+ .|..|+++++...|+ ..++|||+|||||+ +|||||||||++|||
T Consensus 113 v~~~~~~~~~~~~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~----~~~~HaV~iVGyg~-----~yWivkNSWG~~WGe 183 (213)
T 3ioq_A 113 VPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCG----TSIDHAVAAVGYGN-----DYILIKNSWGTGWGE 183 (213)
T ss_dssp CCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCSCC----SCCCEEEEEEEEET-----TEEEEECSBCTTSTB
T ss_pred eCCchHHHHHHHHHhCCEEEEEEechhhhhhccCCeEcCCCC----CccCceEEEEecCC-----CeEEEECCCCCCccc
Confidence 0001112244433 455566655443332 34679999999994 799999999999999
Q ss_pred CceEEEEeeC----cccccccceeE
Q psy4869 2387 QGLFKIRRGV----NMCSIEDSVMA 2407 (2435)
Q Consensus 2387 ~Gy~~i~r~~----n~cgi~~~~~~ 2407 (2435)
+|||||+||. |+|||++++.+
T Consensus 184 ~Gy~~i~r~~~~~~~~Cgi~~~~~~ 208 (213)
T 3ioq_A 184 GGYIRIKRGSGNPQGACGVLSDSVF 208 (213)
T ss_dssp TTEEEEESSCSSTTCGGGTTSCCEE
T ss_pred CCeEEEEcCCCCCCCcccccCcceE
Confidence 9999999997 89999998874
|
| >3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=378.54 Aligned_cols=186 Identities=23% Similarity=0.465 Sum_probs=149.2
Q ss_pred CCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhh
Q psy4869 2172 EAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQ 2251 (2435)
Q Consensus 2172 ~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~ 2251 (2435)
.+||++||||+ +|+|+||||||.||||| |||++++||++++++
T Consensus 5 ~~lP~~~Dwr~-----~~~v~pVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~ 47 (224)
T 3f75_A 5 SELPAGVDWRS-----RGCVTPVKDQRDCGSCW--------------------------------AFSTTGALEGAHCAK 47 (224)
T ss_dssp GGSCSCEEHHH-----HTCCCCCCBCCSSSCHH--------------------------------HHHHHHHHHHHHHHH
T ss_pred cCCCCceeccc-----CCCCCCCccCCCCccHH--------------------------------HHHHHHHHHHHHHHh
Confidence 46999999999 89999999999999999 999999999999999
Q ss_pred cCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHH-cCccCCCcccCCCCCccccc------------
Q psy4869 2252 SKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWIN-AGLVDGGDYGTHDVSMGRYI------------ 2318 (2435)
Q Consensus 2252 ~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~-~Gi~~~~~y~~~~~~~~~~~------------ 2318 (2435)
++..+. ||+|+|+ ||... .++.||+||++..||+|+++ +|+++|.+|||......+..
T Consensus 48 ~~~~~~--lS~q~l~----~c~~~---~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~ 118 (224)
T 3f75_A 48 TGKLVS--LSEQELM----DCSRA---EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVVKILGF 118 (224)
T ss_dssp HSCCCC--BCHHHHH----HHCGG---GTCCGGGCBCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCGGGSCCCBCCSEE
T ss_pred cCCCce--eCHHHHh----hcccC---CCCCCCCCCCHHHHHHHHHHhCCccccccCCCcCCCCCCCcCCCCceEEeccE
Confidence 887665 9999999 77642 24679999999999999998 79999999999754322110
Q ss_pred --------cCcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCC-CCcceEEEEccCCC
Q psy4869 2319 --------EGIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSS-QNEPYWLCTNSYNQ 2382 (2435)
Q Consensus 2319 --------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~-~g~~yWiikNSWG~ 2382 (2435)
..++.++. .+|+.+ .|..|+.+++...|+ ..++|||+|||||.++ +|++|||||||||+
T Consensus 119 ~~~~~~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~~~~~----~~~~Hav~iVGyg~~~~~g~~ywivkNSWG~ 193 (224)
T 3f75_A 119 KDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFDASCG----TDLDHGVLLVGYGTDKESKKDFWIMKNSWGT 193 (224)
T ss_dssp EECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEECCCCC----CCCCEEEEEEEEEEETTTTEEEEEEECSBCT
T ss_pred EEeCCChHHHHHHHHc-CCCEEEEEeccchhhhcCccceECCCCC----CccCeEEEEEEEecccCCCCCEEEEECCcCc
Confidence 01111112 344433 456667665543343 4567999999999764 78999999999999
Q ss_pred CcCCCceEEEEeeC---cccccccceeEE
Q psy4869 2383 GWGEQGLFKIRRGV---NMCSIEDSVMAG 2408 (2435)
Q Consensus 2383 ~WG~~Gy~~i~r~~---n~cgi~~~~~~~ 2408 (2435)
.|||+|||||.||. |+|||++++++.
T Consensus 194 ~WG~~Gy~~i~~~~~~~~~cgi~~~~~~p 222 (224)
T 3f75_A 194 GWGRDGYMYMAMHKGEEGQCGLLLDASFP 222 (224)
T ss_dssp TSTBTTEEEEESCSCTTCGGGTTSSCEEE
T ss_pred chhhCCEEEEEcCCCCCCcCcccCceeee
Confidence 99999999999998 999999998743
|
| >1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=391.44 Aligned_cols=195 Identities=26% Similarity=0.458 Sum_probs=152.1
Q ss_pred CCCCCCCccccCccCCCCCCCcccccCCC---CCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhh
Q psy4869 2170 TDEAIPETFDAREEWPQCKDVIGKVWDQG---ACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSD 2246 (2435)
Q Consensus 2170 ~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg---~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~ 2246 (2435)
...+||++||||++ ++.++|+|||||| .||||| |||++++||+
T Consensus 32 ~~~~lP~~~DwR~~--~~~~~vtpVkdQg~~~~CGSCW--------------------------------Afa~~~alE~ 77 (277)
T 1deu_A 32 SPADLPKSWDWRNV--DGVNYASITRNQHIPQYCGSCW--------------------------------AHASTSAMAD 77 (277)
T ss_dssp CGGGSCSCEETTSB--TTBCCCCCCCBTTCSSCCBCHH--------------------------------HHHHHHHHHH
T ss_pred ccccCCCceecccC--CCCCcCCccccCCCCCCCcchH--------------------------------HHHHHHHHHH
Confidence 34579999999994 2347899999999 999999 9999999999
Q ss_pred hhhhhcCCCc-CccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccccc-------
Q psy4869 2247 RICIQSKGQV-KPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYI------- 2318 (2435)
Q Consensus 2247 ~~~~~~~~~~-~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~------- 2318 (2435)
+++|++++.. ...||+|+|+ ||.. +.||+||++..||+|++++||++|.+|||......+..
T Consensus 78 ~~~i~~~g~~~~~~LS~Q~lv----dC~~------~~gC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~ 147 (277)
T 1deu_A 78 RINIKRKGAWPSTLLSVQNVI----DCGN------AGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTC 147 (277)
T ss_dssp HHHHHTTTCSSCCCBCHHHHH----HHSS------SEETBEECHHHHHHHHHHTCBCBGGGSCCCSSCCCCCHHHHSEEE
T ss_pred HHHHHhCCCCCCcccCHHHHH----hCcC------CCCCCCCCHHHHHHHHHHcCCCcCccCCCcCCCCCcccccccccc
Confidence 9999986542 2349999999 7764 25899999999999999999999999999765321110
Q ss_pred --------------------------cCcccceeecccCCcc------cccceeeEEEEecCCCcCcccceEEEEEEecc
Q psy4869 2319 --------------------------EGIGHAASVMGSSNPE------VNNFEKVIRLYSCEGSINPRYIHSVKIIGWGK 2366 (2435)
Q Consensus 2319 --------------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~ 2366 (2435)
..++..+...+|+.+. |..|+.+++...+ ....++|||+|||||+
T Consensus 148 ~~~~~c~~~~~~~~~~i~~y~~v~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GIy~~~~---~~~~~~HaV~iVGyg~ 224 (277)
T 1deu_A 148 NEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQ---DTTYINHVVSVAGWGI 224 (277)
T ss_dssp EETTEEEECSSCCCBCEEEEEEECSHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEECBCC---SCCCCCEEEEEEEEEE
T ss_pred ccCcccccccCcceEEeceeEecCCHHHHHHHHHHcCCEEEEEecccccccCcCcEECCCC---CCCcCCeEEEEEEecc
Confidence 0011112233554443 4455555433222 1235789999999997
Q ss_pred CCCCcceEEEEccCCCCcCCCceEEEEeeCc--------ccccccceeEEEeec
Q psy4869 2367 SSQNEPYWLCTNSYNQGWGEQGLFKIRRGVN--------MCSIEDSVMAGEAKL 2412 (2435)
Q Consensus 2367 ~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n--------~cgi~~~~~~~~~~~ 2412 (2435)
+ +|++|||||||||+.|||+|||||.||.| .||||+.+.+++|++
T Consensus 225 ~-~g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~cgIe~~~~~~~p~~ 277 (277)
T 1deu_A 225 S-DGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV 277 (277)
T ss_dssp E-TTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTTSCEEEEEECC
T ss_pred c-CCccEEEEEeCCCCccCCCcEEEEEcCCCcccccccccceeccccEeecccC
Confidence 6 78999999999999999999999999998 999999999999974
|
| >2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=367.17 Aligned_cols=177 Identities=28% Similarity=0.474 Sum_probs=141.6
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~v~pVkdQg~CGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (212)
T 2cio_A 1 IPEYVDWRQ-----KGAVTPVKNQGSCGSCW--------------------------------AFSAVVTIEGIIKIRTG 43 (212)
T ss_dssp CCSCEETTT-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcccCCC-----CCCCCCCccCCccchHH--------------------------------HHHHHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccccc----------c----
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYI----------E---- 2319 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~----------~---- 2319 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++|+++|.+|||......+.. .
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~ 112 (212)
T 2cio_A 44 NLNQ--YSEQELL----DCDR-----RSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQ 112 (212)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHTCBCBTTTSCCCSSCCCCCTTTTCSCSBCCSEEEE
T ss_pred Cccc--cCHHHHH----HhCC-----CCCCCCCCCHHHHHHHHHHhCcCcccccCCcCCCCCcCCCCCCCceEEEeeEEE
Confidence 7665 9999999 7763 357899999999999999999999999999654321110 0
Q ss_pred -------CcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2320 -------GIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2320 -------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
.++.++ ..+|+.+ .|..|+++++...|+. .++|||+|||||+ +|||||||||++||
T Consensus 113 v~~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~~~----~~~HaV~iVGyg~-----~yWivkNSWG~~WG 182 (212)
T 2cio_A 113 VQPYNEGALLYSI-ANQPVSVVLEAAGKDFQLYRGGIFVGPCGN----KVDHAVAAVGYGP-----NYILIKNSWGTGWG 182 (212)
T ss_dssp CCSSCHHHHHHHH-HHSCEEEEECCCSHHHHTCCSSEECCCCCS----CCCEEEEEEEEET-----TEEEEECSBCTTST
T ss_pred eCCccHHHHHHHH-HhCCEEEEEeccCcchhhcCCceecCCCCC----CCCEEEEEEEecC-----CeEEEEeCCCCCcc
Confidence 011111 1244433 3555666654433442 4689999999995 79999999999999
Q ss_pred CCceEEEEeeC----cccccccceeEE
Q psy4869 2386 EQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
|+|||||.|+. |+|||+.++.++
T Consensus 183 e~Gy~~i~~~~~~~~~~Cgi~~~~~~p 209 (212)
T 2cio_A 183 ENGYIRIKRGTGNSYGVCGLYTSSFYP 209 (212)
T ss_dssp BTTEEEEECSSSCTTCGGGTTSCCEEE
T ss_pred cCcEEEEEcCCCCCCCccCcccceeEE
Confidence 99999999996 899999988743
|
| >1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=365.18 Aligned_cols=177 Identities=29% Similarity=0.545 Sum_probs=141.9
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (208)
T 1o0e_A 1 LPEQIDWRK-----KGAVTPVKNQGSCGSCW--------------------------------AFSTVSTVESINQIRTG 43 (208)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcCcCCC-----CCCCCCCccCCCCccHH--------------------------------HHHHHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCcccc-------c-------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRY-------I------- 2318 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~-------~------- 2318 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++ |+++|.+|||......+. +
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~i~~~~~v~ 112 (208)
T 1o0e_A 44 NLIS--LSEQELV----DCDK-----KNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSIDGYNGVP 112 (208)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCCCCCCBCCCEEEECC
T ss_pred Ccee--cCHHHhh----hhcC-----CCCCCCCCCHHHHHHHHHHhCCcCcccccCccCCCCcCCCCCceEEeCeEEEeC
Confidence 7665 9999999 7763 35789999999999999997 999999999965432111 0
Q ss_pred ----cCcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCC
Q psy4869 2319 ----EGIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQ 2387 (2435)
Q Consensus 2319 ----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~ 2387 (2435)
..++.++ ..+|+.+ .|..|+++++...|+. .++|||+|||||+ +|||||||||++|||+
T Consensus 113 ~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~----~~~HaV~iVGyg~-----~yWivkNSWG~~WGe~ 182 (208)
T 1o0e_A 113 FCNEXALKQAV-AVQPSTVAIDASSAQFQQYSSGIFSGPCGT----KLNHGVTIVGYQA-----NYWIVRNSWGRYWGEK 182 (208)
T ss_dssp TTCHHHHHHHH-HHSCEEEEECCCSHHHHTCCSSEECCCCCS----CCCEEEEEEEECS-----SEEEEECSBCTTSTBT
T ss_pred CCCHHHHHHHH-HhCCEEEEEEccCcccccccCceECCCCCC----cCCEEEEEEEeCC-----CeEEEEcCCCCcccCC
Confidence 0011111 1244433 4556666654434442 4689999999995 7999999999999999
Q ss_pred ceEEEEeeC--cccccccceeEE
Q psy4869 2388 GLFKIRRGV--NMCSIEDSVMAG 2408 (2435)
Q Consensus 2388 Gy~~i~r~~--n~cgi~~~~~~~ 2408 (2435)
|||||.|+. |+|||++++.++
T Consensus 183 Gy~~i~~~~~~~~Cgi~~~~~~p 205 (208)
T 1o0e_A 183 GYIRMLRVGGCGLCGIARLPYYP 205 (208)
T ss_dssp TEEEEECCSTTCGGGTTSSCEEE
T ss_pred cEEEEEcCCCCCcCCCcccceee
Confidence 999999997 999999987743
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=384.62 Aligned_cols=289 Identities=29% Similarity=0.442 Sum_probs=263.6
Q ss_pred EEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1076 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155 (2435)
Q Consensus 1076 ~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~ 1155 (2435)
..+.+|..+|++++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECC
Q psy4869 1156 FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD 1235 (2435)
Q Consensus 1156 ~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~D 1235 (2435)
.+.+.. +.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.++.|+|++.+|++++.|
T Consensus 182 ~~~~~~------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 182 FECIRT------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp SCEEEC------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CceeEE------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 765544 35899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccc
Q psy4869 1236 GRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1315 (2435)
Q Consensus 1236 g~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1315 (2435)
+.|++||+++.+....+..+ ..
T Consensus 256 ~~v~vwd~~~~~~~~~~~~h----------------------------------------------------------~~ 277 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELREH----------------------------------------------------------RH 277 (410)
T ss_dssp SCEEEEETTTCCEEEEECCC----------------------------------------------------------SS
T ss_pred CeEEEEECCCCceeeEecCC----------------------------------------------------------Cc
Confidence 99999999887665544322 12
Q ss_pred cEEEEEecC--------------------CcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEe
Q psy4869 1316 QVLCARVSP--------------------DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS 1375 (2435)
Q Consensus 1316 ~i~~ia~sp--------------------dg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg 1375 (2435)
.+.+++|+| +|.+|++|+.||.|++||+.+++++..+.+|...|.+++|+|+|++|++|+
T Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe
Confidence 233444444 477899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1376 ~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
.|+.|++||+.+++++..+.+|..+|++|+|+|++.+|++|+.||.|++|++.
T Consensus 358 ~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999863
|
| >2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=368.07 Aligned_cols=177 Identities=27% Similarity=0.461 Sum_probs=141.7
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~~ 43 (214)
T 2bdz_A 1 YPESIDWRE-----KGAVTPVKNQNPCGSCW--------------------------------AFSTVATIEGINKIITG 43 (214)
T ss_dssp CCSCEETTT-----TTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcEeCCC-----CCCCCCCccCCCCccHH--------------------------------HHHhHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccccc----------c----
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYI----------E---- 2319 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~----------~---- 2319 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++|+++|.+|||......+.. .
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~ 112 (214)
T 2bdz_A 44 QLIS--LSEQELL----DCER-----RSHGCDGGYQTTSLQYVVDNGVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKY 112 (214)
T ss_dssp CBCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHCEEBTTTSCCCSSCCCCCTTTCCSCEECCCEEEE
T ss_pred Cccc--cCHHHHH----hhcC-----CCCCCCCCCHHHHHHHHHHhCCCccccCCCCCCCCCCCCCCCCCceeeecCEEE
Confidence 7765 9999999 7764 256899999999999999999999999999654321110 0
Q ss_pred -------CcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2320 -------GIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2320 -------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
.++.++. .+|+.+ .|..|+++++...|+. .++|||+|||||+ +|||||||||++||
T Consensus 113 v~~~~~~~i~~~l~-~gPV~v~i~~~~~~f~~Y~~Giy~~~~~~----~~~HaV~iVGyg~-----~yWivkNSWG~~WG 182 (214)
T 2bdz_A 113 VPANDEISLIQAIA-NQPVSVVTDSRGRGFQFYKGGIYEGPCGT----NTDHAVTAVGYGK-----TYLLLKNSWGPNWG 182 (214)
T ss_dssp ECSSBHHHHHHHHH-HSCEEEEECCCSHHHHTCCSSEECCSCCS----CCCEEEEEEEECS-----SEEEEECSBCTTST
T ss_pred eCCCcHHHHHHHHH-hCCEEEEEeeChhHhhcccCceecCCCCC----CCCeEEEEEEcCC-----CeEEEEeCCCCCcc
Confidence 0111111 144433 3555666554444432 4689999999995 79999999999999
Q ss_pred CCceEEEEeeC----cccccccceeEE
Q psy4869 2386 EQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
|+|||||.|+. |+|||+..+.+.
T Consensus 183 e~Gy~~i~~~~~~~~~~Cgi~~~~~~p 209 (214)
T 2bdz_A 183 EKGYIRIKRASGRSKGTCGVYTSSFFP 209 (214)
T ss_dssp BTTEEEEECCCSBSSCGGGTTSCEEEE
T ss_pred cCCEEEEEcCCCCCCCcccccccceEE
Confidence 99999999986 899999988743
|
| >3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=374.97 Aligned_cols=184 Identities=23% Similarity=0.381 Sum_probs=145.3
Q ss_pred CCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhh
Q psy4869 2171 DEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICI 2250 (2435)
Q Consensus 2171 ~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~ 2250 (2435)
..+||++||||+ +|+|+||||||.||||| |||++++||++++|
T Consensus 17 ~~~lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~alE~~~~i 59 (243)
T 3bwk_A 17 AKLDRIAYDWRL-----HGGVTPVKDQALCGSCW--------------------------------AFSSVGSVESQYAI 59 (243)
T ss_dssp CCCCCSCEEGGG-----TTCCCCCCBCCSSCCHH--------------------------------HHHHHHHHHHHHHH
T ss_pred cccCCCceecCc-----CCCCCCCccCCCCchHH--------------------------------HHHHHHHHHHHHHH
Confidence 456999999999 88999999999999999 99999999999999
Q ss_pred hcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHH-cCccCCCcccCCCCCcc-cccc---------
Q psy4869 2251 QSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWIN-AGLVDGGDYGTHDVSMG-RYIE--------- 2319 (2435)
Q Consensus 2251 ~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~-~Gi~~~~~y~~~~~~~~-~~~~--------- 2319 (2435)
+++..+. ||+|+|+ ||... +.||+||++..||+|+++ .|+++|.+|||...... +...
T Consensus 60 ~~~~~~~--lSeq~lv----dC~~~-----~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~i~ 128 (243)
T 3bwk_A 60 RKKALFL--FSEQELV----DCSVK-----NNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIK 128 (243)
T ss_dssp HHCSCCC--BCHHHHH----HHCTT-----SCGGGCCCHHHHHHHHHHTTSBCBTTTSCCCTTSCCCCCGGGCSSCBCCC
T ss_pred hcCCCcc--cCHHHHH----HhcCC-----CCCCCCCCHHHHHHHHHHhCCcccccccCCcCCCCCcCCCCCCccceeee
Confidence 9887765 9999999 77642 568999999999999998 69999999999754322 2110
Q ss_pred -----------CcccceeecccCCccc------ccceeeEEEEecCCCcCcccceEEEEEEeccCC---------CCcce
Q psy4869 2320 -----------GIGHAASVMGSSNPEV------NNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSS---------QNEPY 2373 (2435)
Q Consensus 2320 -----------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~---------~g~~y 2373 (2435)
.++.+ . +|+.+.+ ..|+++++...|+. .++|||+|||||+++ .|++|
T Consensus 129 ~~~~v~~~~~~~ik~~--l-GPV~v~i~~~~~f~~Y~~Giy~~~c~~----~~~HaV~iVGyg~~~~~~~~~~~~~g~~y 201 (243)
T 3bwk_A 129 SYVSIPDDKFKEALRY--L-GPISISIAASDDFAFYRGGFYDGECGA----APNHAVILVGYGMKDIYNEDTGRMEKFYY 201 (243)
T ss_dssp EEEECCTTCHHHHHHH--T-CCEEEEECCCHHHHTCCSSSCCCCCCS----SCCEEEEEEEEEEEEEECTTTCSEEEEEE
T ss_pred eEEEeCCCCHHHHHHh--h-CCEEEEEecChhHHhcCCceecCCCCC----cCCeEEEEEEecCccccccccccCCCCCE
Confidence 01111 1 5554444 34444332222322 268999999999763 27899
Q ss_pred EEEEccCCCCcCCCceEEEEeeCcc----cccccceeEEE
Q psy4869 2374 WLCTNSYNQGWGEQGLFKIRRGVNM----CSIEDSVMAGE 2409 (2435)
Q Consensus 2374 WiikNSWG~~WG~~Gy~~i~r~~n~----cgi~~~~~~~~ 2409 (2435)
||||||||+.|||+|||||.|+.|. |||++++++++
T Consensus 202 WivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~ 241 (243)
T 3bwk_A 202 YIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241 (243)
T ss_dssp EEEECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEEEE
T ss_pred EEEEeCCCCCcCCCcEEEEEcCCCCCCCcCCccceEEEEe
Confidence 9999999999999999999999877 99999988544
|
| >2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=373.97 Aligned_cols=184 Identities=24% Similarity=0.424 Sum_probs=145.5
Q ss_pred CCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhh
Q psy4869 2171 DEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICI 2250 (2435)
Q Consensus 2171 ~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~ 2250 (2435)
..+||++||||+ +|+|+||||||.||||| |||++++||++++|
T Consensus 15 ~~~lP~~~DwR~-----~~~vtpVkdQg~CGsCW--------------------------------AFaa~~alE~~~~i 57 (241)
T 2oul_A 15 ENFDHAAYDWRL-----HSGVTPVKDQKNCGSCW--------------------------------AFSSIGSVESQYAI 57 (241)
T ss_dssp CCCCSSCEEGGG-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHH
T ss_pred cccCCCccccCc-----CCCCCCCccCccchHHH--------------------------------HHHHHHHHHHHHHH
Confidence 346999999999 88999999999999999 99999999999999
Q ss_pred hcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHH-cCccCCCcccCCCCCcc-ccc---------c
Q psy4869 2251 QSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWIN-AGLVDGGDYGTHDVSMG-RYI---------E 2319 (2435)
Q Consensus 2251 ~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~-~Gi~~~~~y~~~~~~~~-~~~---------~ 2319 (2435)
+++..+. ||+|+|+ ||... +.||+||++..||+|+++ +|+++|.+|||...... +.. .
T Consensus 58 ~~~~~~~--lSeq~l~----dC~~~-----~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~i~ 126 (241)
T 2oul_A 58 RKNKLIT--LSEQELV----DCSFK-----NYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIK 126 (241)
T ss_dssp HHCCCCC--BCHHHHH----HHCTT-----SCTTBCBCHHHHHHHHHHTTSBCBTTSSCCCTTSCCCCCTTSSSCCBCCS
T ss_pred hcCCCcc--cCHHHHH----hhcCC-----CCCCCCCCHHHHHHHHHHhCCcCccccCCCcCCCCCcCCCCCCccceeee
Confidence 9987765 9999999 77642 578999999999999998 69999999999654322 110 0
Q ss_pred -----------CcccceeecccCCccc------ccceeeEEEEecCCCcCcccceEEEEEEeccCC---------CCcce
Q psy4869 2320 -----------GIGHAASVMGSSNPEV------NNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSS---------QNEPY 2373 (2435)
Q Consensus 2320 -----------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~---------~g~~y 2373 (2435)
.++.+ . +|+.+.+ ..|+++++...|+. .++|||+|||||++. .|++|
T Consensus 127 ~~~~v~~~~~~~ik~~--l-GPV~v~i~~~~~f~~Y~~Giy~~~c~~----~~~HaV~iVGyg~~~~~~~~~~~~~g~~y 199 (241)
T 2oul_A 127 NYLSVPDNKLKEALRF--L-GPISISVAVSDDFAFYKEGIFDGECGD----QLNHAVMLVGFGMKEIVNPLTKKGEKHYY 199 (241)
T ss_dssp EEEECCTTCHHHHHHH--T-CCEEEEECBCHHHHTCCSSBCCSCBCS----SCCEEEEEEEEEEEEEECTTTCSEEEEEE
T ss_pred eEEEeCCCCHHHHHHh--h-CCEEEEEecCcchhhcCCcEEcCcCCC----CCCEEEEEEEeccccccccccccCCCCCE
Confidence 01111 1 5554443 34444433222332 268999999999753 27899
Q ss_pred EEEEccCCCCcCCCceEEEEeeCcc----cccccceeEEE
Q psy4869 2374 WLCTNSYNQGWGEQGLFKIRRGVNM----CSIEDSVMAGE 2409 (2435)
Q Consensus 2374 WiikNSWG~~WG~~Gy~~i~r~~n~----cgi~~~~~~~~ 2409 (2435)
||||||||+.|||+|||||.|+.|. |||++++.+++
T Consensus 200 WivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~ 239 (241)
T 2oul_A 200 YIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239 (241)
T ss_dssp EEEECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEEEE
T ss_pred EEEEeCCCCCcccCCEEEEEcCCCCCCCcCCccceEEEEe
Confidence 9999999999999999999999877 99999988544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=363.77 Aligned_cols=293 Identities=22% Similarity=0.434 Sum_probs=256.9
Q ss_pred CeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEE
Q psy4869 108 DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKI 187 (2435)
Q Consensus 108 ~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~i 187 (2435)
+...+|.+|.+.|++++|+|+|++||+|+.||.|+|||+.++..+..+.+|..+|.+++|+|+ +.+|++|+.|++|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFRIRV 81 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC--CCEEEEECCCCEEEE
Confidence 457789999999999999999999999999999999999999999999999999999999864 568999999999999
Q ss_pred EeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeE
Q psy4869 188 WDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267 (2435)
Q Consensus 188 Wd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 267 (2435)
||+++++++..+.+|.+.|.+++|+|++++|++|+.|++|++||++.+..
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~------------------------------ 131 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA------------------------------ 131 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE------------------------------
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc------------------------------
Confidence 99999999999999999999999999999999999999999999863210
Q ss_pred EEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccC
Q psy4869 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGR 347 (2435)
Q Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 347 (2435)
T Consensus 132 -------------------------------------------------------------------------------- 131 (304)
T 2ynn_A 132 -------------------------------------------------------------------------------- 131 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeEecccCCcEEEEEECC-CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEcc--CCCEEEEEe
Q psy4869 348 TSNLFAPIMLLEGHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST--DGCHIFTCS 424 (2435)
Q Consensus 348 ~~~~~~p~~~l~gH~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s 424 (2435)
....+.+|...|.+++|+| ++.+|++|+.||.|++||+...........+|...|..+.|++ ++.+|++++
T Consensus 132 ------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 132 ------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp ------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred ------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc
Confidence 0123568999999999999 6799999999999999999765555555567788999999987 678999999
Q ss_pred CCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEE
Q psy4869 425 TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 425 ~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l 504 (2435)
.|+.|++||+++++.+..+.+|.. .|.+++|+|++++|
T Consensus 206 ~D~~i~iWd~~~~~~~~~~~~h~~------------------------------------------~v~~~~~~p~~~~l 243 (304)
T 2ynn_A 206 DDLTIKIWDYQTKSCVATLEGHMS------------------------------------------NVSFAVFHPTLPII 243 (304)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSS------------------------------------------CEEEEEECSSSSEE
T ss_pred CCCeEEEEeCCCCccceeeCCCCC------------------------------------------CEEEEEECCCCCEE
Confidence 999999999988887777766543 45677899999999
Q ss_pred EEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCC--EEEEEECCCcEEEEEcC
Q psy4869 505 LTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGS--YILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 505 ~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~--~las~s~Dg~I~lWdl~ 561 (2435)
++|+.||.|++||.++++.+..+..|...+.+++|+|++. ++++|+ |..+.+|++.
T Consensus 244 ~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~ 301 (304)
T 2ynn_A 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLG 301 (304)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC
T ss_pred EEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEec
Confidence 9999999999999999999999999999999999999875 456655 5567788875
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=381.55 Aligned_cols=295 Identities=23% Similarity=0.444 Sum_probs=262.9
Q ss_pred ceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd 433 (2435)
....+.||.+.|++++|+|+|++|++|+.||.|+|||+.... ....+..|...|.+++|+|++++|++++.|+.+++||
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 346789999999999999999999999999999999987653 4567889999999999999999999999999999999
Q ss_pred CCCCc-------eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee------cCcccEEEEEECC-
Q psy4869 434 LEKGQ-------RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM------NNTYQVTSVAFND- 499 (2435)
Q Consensus 434 ~~tg~-------~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~------~~~~~v~sv~~sp- 499 (2435)
+.+.. ....+.+|...+.++.|.|+++..|++|+.|++|++||+++++.+..+ .|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 86532 345678999999999999998888999999999999999999887665 3667899999987
Q ss_pred CCCEEEEEecCCeEEEEECC-CCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccc
Q psy4869 500 TAECVLTGGIDNDIKMWDLR-TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH 578 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~-s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~ 578 (2435)
++++|++|+.||.|++||++ .++.+..+.+|.+.|.+++|+|+|++|++++.|++|++||++. ++++..+..+..
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~----~~~~~~~~~~~~ 292 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT----GHQLQVYNREPD 292 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT----TEEEEEECCCCS
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC----CcEEEEeccccc
Confidence 88999999999999999998 5578889999999999999999999999999999999999984 566666665432
Q ss_pred c---cccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEe----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 579 N---FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKL----PGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 579 ~---~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l----~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
. ....+.+++|+|+|++|++|+.||.|++||...++.+..+ .+|.+.|++++|+|++++|++|+.||+|++|+
T Consensus 293 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 293 RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 1 1124789999999999999999999999999999988877 68999999999999999999999999999999
Q ss_pred CC
Q psy4869 652 SP 653 (2435)
Q Consensus 652 ~~ 653 (2435)
+.
T Consensus 373 ~~ 374 (380)
T 3iz6_a 373 FS 374 (380)
T ss_dssp CC
T ss_pred cC
Confidence 86
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=369.18 Aligned_cols=291 Identities=24% Similarity=0.412 Sum_probs=261.1
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
.....+.||.+.|++++|+|++++|++|+.||.|++||..... ....+..|...|.+++|+|++..|++++.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 3456789999999999999999999999999999999987543 345677899999999999999999999999999999
Q ss_pred ECCCC------ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECC--CCCE
Q psy4869 433 DLEKG------QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFND--TAEC 503 (2435)
Q Consensus 433 d~~tg------~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp--~g~~ 503 (2435)
++... .....+.+|...|.++.|.+++ ..+++++.|++|++||+++++.+..+ .|...|.+++|+| +|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 98643 3456778899999999999987 46779999999999999999988777 4778899999987 5789
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccC
Q psy4869 504 VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKN 583 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~ 583 (2435)
|++|+.||.|++||+++++++..+.+|...|++++|+|++++|++++.|++|++||++. .+.+..+..+.. ...
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~----~~~~~~~~~~~~--~~~ 286 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA----DREVAIYSKESI--IFG 286 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----TEEEEEECCTTC--CSC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC----CcEEEEEcCCCc--ccc
Confidence 99999999999999999999999999999999999999999999999999999999984 455555544322 236
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 584 LLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 584 i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++|+.||+|++|+
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=363.67 Aligned_cols=291 Identities=25% Similarity=0.362 Sum_probs=263.3
Q ss_pred EEEEEecCCcCEEEEEEcCC----CCEEEEEECCCcEEEEEccCCce--eEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q psy4869 1074 FFISLYGHKLPVLSLDMSYD----STLIATGSGDRTVKVWGLDYGDC--HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1147 (2435)
Q Consensus 1074 ~~~~l~~h~~~V~sl~~spd----g~~L~Sgs~Dg~I~vWd~~t~~~--~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~ 1147 (2435)
....+.+|...|.+++|+++ +.+|++|+.|+.|++|++..++. ...+.+|...|.+++|++++.++++++.|+.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34556789999999999874 57999999999999999987753 4567899999999999999999999999999
Q ss_pred EEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCC
Q psy4869 1148 VKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1227 (2435)
Q Consensus 1148 V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~ 1227 (2435)
|++||+.+++.+..+ ..+...+.+++|+|++++|++|+.||.|++||+++++....+..|...|.+++|+|+++
T Consensus 104 i~lWd~~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 104 IRLWDLENGKQIKSI------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177 (321)
T ss_dssp EEEEETTTTEEEEEE------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS
T ss_pred EEEEECCCCCEEEEE------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC
Confidence 999999998766655 36788899999999999999999999999999999999889999999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeee
Q psy4869 1228 YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLH 1307 (2435)
Q Consensus 1228 ~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1307 (2435)
+|++++.||.|++||+++.+.+..+.
T Consensus 178 ~lasg~~dg~i~iwd~~~~~~~~~~~------------------------------------------------------ 203 (321)
T 3ow8_A 178 YLASGAIDGIINIFDIATGKLLHTLE------------------------------------------------------ 203 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC------------------------------------------------------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEc------------------------------------------------------
Confidence 99999999999999998765543321
Q ss_pred cccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1308 TRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1387 (2435)
Q Consensus 1308 ~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~ 1387 (2435)
.+...|.+++|+|++++|++|+.||.|++||+..++....+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 204 ----~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 204 ----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp ----CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ----ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence 1234678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1388 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1388 gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
++++..+.+|...|++|+|+|++.+|++++.||.|+|||..
T Consensus 280 ~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 280 RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999963
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=363.34 Aligned_cols=294 Identities=20% Similarity=0.276 Sum_probs=264.5
Q ss_pred CeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q psy4869 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1151 (2435)
Q Consensus 1072 ~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iw 1151 (2435)
.+....+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEE
Q psy4869 1152 DADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1152 D~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvs 1231 (2435)
|+.+...... ....+.+|...|.++.|++++ .+++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++++|++
T Consensus 125 ~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVR--VSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCE--EEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcce--eEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9987543221 123456899999999999876 5889999999999999999999999999999999999999999999
Q ss_pred EECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccc
Q psy4869 1232 TSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311 (2435)
Q Consensus 1232 gs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1311 (2435)
|+.|+.|++||+++...+..+.
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~---------------------------------------------------------- 223 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFT---------------------------------------------------------- 223 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEEC----------------------------------------------------------
T ss_pred EeCCCcEEEEECCCCeeEEEEc----------------------------------------------------------
Confidence 9999999999998765433221
Q ss_pred cccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q psy4869 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG--HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1389 (2435)
Q Consensus 1312 ~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~--h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk 1389 (2435)
.+...|.+++|+|++++|++|+.||.|++||+..++.+..+.. +...|.+++|+|+|++|++|+.|+.|++||+.+++
T Consensus 224 ~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 1245689999999999999999999999999999888777653 34579999999999999999999999999999999
Q ss_pred eEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1390 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1390 ~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
.+..+.+|..+|++|+|+|++.+|+|||.||.|+|||
T Consensus 304 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999997
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=379.48 Aligned_cols=315 Identities=20% Similarity=0.373 Sum_probs=269.3
Q ss_pred EEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEE
Q psy4869 99 LKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVS 178 (2435)
Q Consensus 99 i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S 178 (2435)
+..|+........+|.||.+.|++++|+|+|++||||+.|++|+|||..+.+....+.+|...|.+++|+| ++.+|++
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~--~g~~las 125 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP--NGQSVAC 125 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT--TSSEEEE
T ss_pred ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC--CCCEEEE
Confidence 34566667778889999999999999999999999999999999999999999999999999999999985 5678999
Q ss_pred EeCCCcEEEEeccCCc-------cccccccccceEEEEEEEeCC-CeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhc
Q psy4869 179 SAKDTFVKIWDADTGD-------CFKTMAAHLTEVWGVCVMRED-SYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQL 250 (2435)
Q Consensus 179 ~s~Dg~I~iWd~~tg~-------~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~ 250 (2435)
|+.|+.|++||+.++. ....+.+|.+.|.++.|.|++ ..|++|+.|++|++||+++++.+..
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~---------- 195 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI---------- 195 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE----------
T ss_pred eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE----------
Confidence 9999999999987543 345678999999999999974 5699999999999999986421100
Q ss_pred ceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEE
Q psy4869 251 NQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVY 330 (2435)
Q Consensus 251 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~ 330 (2435)
+
T Consensus 196 -------------------------------------------------------------------------------~ 196 (380)
T 3iz6_a 196 -------------------------------------------------------------------------------F 196 (380)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------e
Confidence 0
Q ss_pred eCccceeeeeecccccCccccccceeEecccCCcEEEEEECC-CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCee
Q psy4869 331 DREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVM 409 (2435)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~ 409 (2435)
.. ....+|...|.++.|++ ++++|++|+.||.|++||++........+.+|.+.|.
T Consensus 197 ~~-----------------------~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~ 253 (380)
T 3iz6_a 197 GS-----------------------EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN 253 (380)
T ss_dssp CC-----------------------CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC
T ss_pred ec-----------------------ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE
Confidence 00 01237889999999987 8899999999999999999855556678899999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCc
Q psy4869 410 DLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT 489 (2435)
Q Consensus 410 ~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~ 489 (2435)
+++|+|++++|++++.|+.|++||+++++.+..+..+.... ..+.
T Consensus 254 ~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~-----------------------------------~~~~ 298 (380)
T 3iz6_a 254 SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN-----------------------------------DNEL 298 (380)
T ss_dssp EEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS-----------------------------------CCSS
T ss_pred EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc-----------------------------------cccc
Confidence 99999999999999999999999999988877665442110 0012
Q ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEE----ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 490 YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL----RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 490 ~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l----~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
..+.+++|+|+|++|++|+.||.|++||+..++.+..+ .+|.+.|.+++|+|||++|++|+.|++|+||++..
T Consensus 299 ~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 299 PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 24778999999999999999999999999999998887 68999999999999999999999999999999873
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=375.00 Aligned_cols=357 Identities=16% Similarity=0.230 Sum_probs=291.2
Q ss_pred CcEEEEeccCCccccccccccceEEEEEEEeCCC-eEEEeeCCCcEEEEEc----CCCCCccccchhhhhhhcceeeccc
Q psy4869 183 TFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDS-YLISGSNDAELKVWNV----RDRSDIDTEDKDKLSEQLNQLLLSE 257 (2435)
Q Consensus 183 g~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~Dg~v~vwdl----~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (2435)
..+.+||++..........|.+.|.+++|+|+++ +|++++.|+.|++||+ .+++.+-
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------ 86 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW------------------ 86 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE------------------
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc------------------
Confidence 3456888876655555556779999999999999 9999999999999998 5432100
Q ss_pred CCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCcccee
Q psy4869 258 DEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYK 337 (2435)
Q Consensus 258 ~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~ 337 (2435)
.+.. . .. .
T Consensus 87 --------~~~~--~----------------~~---------------------------------------~------- 94 (425)
T 1r5m_A 87 --------KLTI--I----------------AE---------------------------------------L------- 94 (425)
T ss_dssp --------EEEE--E----------------EE---------------------------------------E-------
T ss_pred --------cccc--c----------------cc---------------------------------------c-------
Confidence 0000 0 00 0
Q ss_pred eeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCC
Q psy4869 338 VQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417 (2435)
Q Consensus 338 ~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg 417 (2435)
.. .+.......+|.+.|++++|+|+|++|++|+.||.|++||... .....+.+|...|.+++|+|++
T Consensus 95 -~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 161 (425)
T 1r5m_A 95 -RH----------PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG--ALLNVLNFHRAPIVSVKWNKDG 161 (425)
T ss_dssp -EC----------CCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCCSCEEEEEECTTS
T ss_pred -cc----------cccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CeeeeccCCCccEEEEEECCCC
Confidence 00 0000012346889999999999999999999999999999443 4556788999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEeccCcc---------------ccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc
Q psy4869 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTF---------------VNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ 482 (2435)
Q Consensus 418 ~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~---------------v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~ 482 (2435)
++|++++.|+.|++||+.+++.+..+..+... +.++.|.+++ .+++++.|+.|++||++.++.
T Consensus 162 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 162 THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTP 239 (425)
T ss_dssp SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSC
T ss_pred CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCce
Confidence 99999999999999999999999999888776 8899998875 578899999999999999888
Q ss_pred eEee-cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 483 AVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 483 ~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
...+ .+...|.+++|+|++++|++++.||.|++||+++++.+..+.+|...|.+++|+|++ +|++++.|+.|++||++
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp SEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred eeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence 7776 577899999999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred CCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc--------------------EEEEecC
Q psy4869 562 PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR--------------------IAYKLPG 621 (2435)
Q Consensus 562 ~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~--------------------~~~~l~~ 621 (2435)
..+++..+..|. ..+..++|+|++++|++++.||.|++||+.+++ ++..+.+
T Consensus 319 ----~~~~~~~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (425)
T 1r5m_A 319 ----QNTLLALSIVDG----VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS 390 (425)
T ss_dssp ----TTEEEEEEECTT----CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECC
T ss_pred ----CCcEeEecccCC----ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcC
Confidence 356777777664 378999999999999999999999999999888 8999999
Q ss_pred CCC--CeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 622 HNG--SVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 622 h~~--~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 391 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 391 SQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 977 99999999999999999999999999985
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=357.36 Aligned_cols=288 Identities=22% Similarity=0.410 Sum_probs=256.0
Q ss_pred eeEecccCCcEEEEEECCCC-CEEEEEeCCCeEEEEecCCc----eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeE
Q psy4869 355 IMLLEGHGGEIFCSKYHPDG-QYIASSGYDRQIFIWSVYGE----CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTL 429 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~----~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I 429 (2435)
...+.||.+.|++++|+|++ ++|++|+.|+.|++||+... ...+..+.+|...|.+++|++++++|++++.|++|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 35788999999999999965 89999999999999998632 23456789999999999999999999999999999
Q ss_pred EEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCC------CCE
Q psy4869 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDT------AEC 503 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~------g~~ 503 (2435)
++||+++++.+..+.+|...|.+++|.+++ .++++|+.|+.|++||++.........|...+.+++|.|. +.+
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 999999999999999999999999999986 5788999999999999976544444568889999999985 458
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccC
Q psy4869 504 VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKN 583 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~ 583 (2435)
|++|+.|+.|++||+++++....+.+|...|.+++|+|+|++|++++.|++|+|||++. .+++..+..+ ..
T Consensus 169 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~-----~~ 239 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA----KKAMYTLSAQ-----DE 239 (319)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT----TEEEEEEECC-----SC
T ss_pred EEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CcEEEEecCC-----Cc
Confidence 99999999999999999999999999999999999999999999999999999999983 5667777654 37
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC--------CCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 584 LLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG--------HNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 584 i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~--------h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+.+++|+|++.+|++++.+ .+++|++..+..+..+.. |...|.+++|+|++++|++|+.||.|++|++.
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 8999999999999988765 499999998887776643 46679999999999999999999999999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=352.56 Aligned_cols=294 Identities=21% Similarity=0.249 Sum_probs=260.0
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD 1152 (2435)
+....+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc-eeeEeeccCCCEEEEEEee-CCCEEE
Q psy4869 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD-CHKSLLAHEDSVTGVTFVP-KTHYFF 1230 (2435)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~-~~~~~~~h~~~V~~i~~sp-d~~~lv 1230 (2435)
+.+++.+..+ .+|...|.+++|+|++.+|++|+.|+.|++||++++. ....+.+|...|.+++|+| ++..|+
T Consensus 84 ~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 84 YNTGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp TTTCCEEEEE------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred CCCCcEEEEE------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence 9998776655 4899999999999999999999999999999999874 4567889999999999999 678999
Q ss_pred EEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1231 sgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+|+.|+.|++||++.......+..
T Consensus 158 sgs~D~~v~iwd~~~~~~~~~~~~-------------------------------------------------------- 181 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQSTPNFTLTT-------------------------------------------------------- 181 (304)
T ss_dssp EEETTSEEEEEETTCSSCSEEEEC--------------------------------------------------------
T ss_pred EEeCCCeEEEEECCCCCccceecc--------------------------------------------------------
Confidence 999999999999976544322110
Q ss_pred ccccccEEEEEecC--CcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q psy4869 1311 LKLEEQVLCARVSP--DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1388 (2435)
Q Consensus 1311 ~~~~~~i~~ia~sp--dg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~g 1388 (2435)
.....+..+.|+| ++.+|++|+.||.|++||+.+++++..+.+|...|..++|+|++++|++|+.||.|++||+.++
T Consensus 182 -~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 182 -GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp -CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred -CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 1123456667765 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecccccceEEEEEeeCCC--EEEEEeCCCcEEEEECCCc
Q psy4869 1389 DCHKSLLAHEDSVTGVTFVPKTH--YFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1389 k~~~~~~~h~~~V~~laf~P~~~--~laSgg~Dg~V~lWd~~~~ 1430 (2435)
++...+..|...|.+++|+|++. ++++|+.| .+.+|++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp CEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred ceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence 99999999999999999999884 56766655 5888887653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=349.23 Aligned_cols=294 Identities=33% Similarity=0.592 Sum_probs=262.8
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
.....+.+|.+.|++++|+|+|++|++|+.||.|++|+..... ....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 3456789999999999999999999999999999999987643 455678999999999999999999999999999999
Q ss_pred ECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCC
Q psy4869 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDN 511 (2435)
Q Consensus 433 d~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg 511 (2435)
|+++++.+..+.+|...|.++.|.|++ .++++++.|+.|++||+++++.+..+ .+...|.+++|+|++++|++|+.||
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 999999999999999999999999987 56789999999999999998887777 4677899999999999999999999
Q ss_pred eEEEEECCCCcEEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEc
Q psy4869 512 DIKMWDLRTNSVVQKLR-GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWS 590 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~-~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~s 590 (2435)
.|++||+++++.+..+. .|...+.+++|+|++++|++++.|+.|++||++ ..+++..+.+|.... ..+......
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~-~~~~~~~~~ 246 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKNEK-YCIFANFSV 246 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT----TTEEEEEECSSCCSS-SCCCEEEEC
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC----CCcEEEEEEecCCce-EEEEEEEEe
Confidence 99999999999888774 567789999999999999999999999999998 457778887775422 122223334
Q ss_pred CCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEE--CCCcEEEecCC
Q psy4869 591 VSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDKTIYLGESP 653 (2435)
Q Consensus 591 pdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs--~Dg~I~vWd~~ 653 (2435)
+++++|++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 6889999999999999999999999999999999999999999999999998 69999999875
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=360.32 Aligned_cols=296 Identities=21% Similarity=0.262 Sum_probs=263.0
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD 1152 (2435)
+....+.+|...|.+++|+|++++|++|+.||.|++||..+++....+..|...|.+++|+|++..|++++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEee--CCCEEE
Q psy4869 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP--KTHYFF 1230 (2435)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp--d~~~lv 1230 (2435)
+..............+..|...|.+++|++++..|++++.|+.|++||+++++.+..+.+|...|.++.|+| +++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 864321110011122347999999999999999999999999999999999999999999999999999988 568999
Q ss_pred EEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1231 sgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+|+.||.|++||+++.+.+..+.
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~--------------------------------------------------------- 237 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFE--------------------------------------------------------- 237 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC---------------------------------------------------------
T ss_pred EEeCCCeEEEEECCCCcEEEEec---------------------------------------------------------
Confidence 99999999999998766543221
Q ss_pred ccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCC--CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGH--KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1388 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h--~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~g 1388 (2435)
.+...|.+++|+|++++||+|+.||.|++||+...+.+..+..+ ...+.+++|+|+|++|++|+.|+.|++||+.++
T Consensus 238 -~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 238 -THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred -CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 12457899999999999999999999999999988877766643 457899999999999999999999999999999
Q ss_pred ceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1389 DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1389 k~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
+++..+.+|..+|++|+|+|++.+|++|+.||.|+||+
T Consensus 317 ~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999999999999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=359.79 Aligned_cols=296 Identities=24% Similarity=0.410 Sum_probs=251.4
Q ss_pred eeEecccCC-cEEEEEECCCCCEEEEEeCCCeEEEEecCCceee--EEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q psy4869 355 IMLLEGHGG-EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECEN--IGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431 (2435)
Q Consensus 355 ~~~l~gH~~-~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~--~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~v 431 (2435)
...+.+|.+ .|.+++|+|+|++||+|+.|+.|+|||+...... .....+|...|.+++|+|++++|++++.|+.+++
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 456789988 9999999999999999999999999998765322 2234689999999999999999999999999999
Q ss_pred EECCCC--ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcce---Eee-cCcccEEEEEECCCCCEEE
Q psy4869 432 WDLEKG--QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQA---VSM-NNTYQVTSVAFNDTAECVL 505 (2435)
Q Consensus 432 wd~~tg--~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~---~~~-~~~~~v~sv~~sp~g~~l~ 505 (2435)
||+..+ +.+..+.+|...|.+++|+|++ .+|++++.|+.|++||++.+... ..+ .|...|.+++|+|++++|+
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 166 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE
Confidence 999876 4577889999999999999987 57889999999999999876432 233 5778899999999999999
Q ss_pred EEecCCeEEEEECCCCc--EEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCC-----------CCceEEE
Q psy4869 506 TGGIDNDIKMWDLRTNS--VVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP-----------GERCVKV 572 (2435)
Q Consensus 506 sgs~dg~V~lwD~~s~~--~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~-----------~~~~v~~ 572 (2435)
+|+.|+.|++||.++++ ....+.+|.+.|.+++|+|+|++|++++.|++|+|||+..... ..+++..
T Consensus 167 s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
T 3fm0_A 167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence 99999999999998875 4577899999999999999999999999999999999753211 1134445
Q ss_pred EeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc---------EEEEecCCCCCeeEEEEcCCCC-EEEEEE
Q psy4869 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR---------IAYKLPGHNGSVNDVQFHPKEP-IIMSAS 642 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~---------~~~~l~~h~~~V~~l~fspd~~-~Lasgs 642 (2435)
+.+.. ...+..++|+|++.+|++++.|+.|++|+...+. ....+.+|...|++|+|+|+++ +||+|+
T Consensus 247 ~~~~h---~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 247 LSGFH---SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp ECSSC---SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred ecCCC---CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 54421 3478999999999999999999999999987542 1233468999999999999985 999999
Q ss_pred CCCcEEEecCCC
Q psy4869 643 SDKTIYLGESPL 654 (2435)
Q Consensus 643 ~Dg~I~vWd~~~ 654 (2435)
.||+|++|++..
T Consensus 324 ~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 324 DDGEVAFWKYQR 335 (345)
T ss_dssp TTSCEEEEEECC
T ss_pred CCCcEEEEEecC
Confidence 999999999873
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=367.40 Aligned_cols=325 Identities=13% Similarity=0.161 Sum_probs=286.7
Q ss_pred ccCCCEEEEEEcCCCC-EEEEEECCCcEEEEEc----CCCe------EEEEEec----------CCcCEEEEEEcCCCCE
Q psy4869 1038 KLEEQVLCARVSPDSK-LLAVSLLDTTVKIFFL----DTFK------FFISLYG----------HKLPVLSLDMSYDSTL 1096 (2435)
Q Consensus 1038 ~~~~~v~~l~~spdg~-~Lavg~~dg~V~i~d~----~~~~------~~~~l~~----------h~~~V~sl~~spdg~~ 1096 (2435)
.+.+.|.+++|+|+|+ +|++|+.||.|++|++ .+++ ....+.. |...|.+++|+|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 3457899999999999 9999999999999999 8777 4555554 6889999999999999
Q ss_pred EEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccC--
Q psy4869 1097 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP-- 1174 (2435)
Q Consensus 1097 L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~-- 1174 (2435)
|++|+.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++....+. .+...
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~ 195 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE------LKETGGS 195 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC------CC-----
T ss_pred EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee------ccccCcc
Confidence 99999999999999 6788899999999999999999999999999999999999999887665543 34444
Q ss_pred -------------eEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEE
Q psy4869 1175 -------------VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1241 (2435)
Q Consensus 1175 -------------V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vw 1241 (2435)
+.+++|++++ .+++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp ----------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 8899999875 68899999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEE
Q psy4869 1242 DADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCAR 1321 (2435)
Q Consensus 1242 D~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia 1321 (2435)
|++..+.+..+. .+...+.+++
T Consensus 275 d~~~~~~~~~~~----------------------------------------------------------~~~~~i~~~~ 296 (425)
T 1r5m_A 275 HGGNGNSQNCFY----------------------------------------------------------GHSQSIVSAS 296 (425)
T ss_dssp CSSSBSCSEEEC----------------------------------------------------------CCSSCEEEEE
T ss_pred ECCCCccceEec----------------------------------------------------------CCCccEEEEE
Confidence 987654322210 1245789999
Q ss_pred ecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc------------
Q psy4869 1322 VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD------------ 1389 (2435)
Q Consensus 1322 ~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk------------ 1389 (2435)
|+|++ +|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 297 ~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 297 WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp EETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------
T ss_pred ECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccc
Confidence 99999 99999999999999999999999999999999999999999999999999999999999988
Q ss_pred --------eEEEeccccc--ceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1390 --------CHKSLLAHED--SVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1390 --------~~~~~~~h~~--~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
++..+..|.. .|++++|+|++.+|++++.||.|++||++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp ---CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 8899999976 999999999999999999999999999863
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=367.49 Aligned_cols=324 Identities=21% Similarity=0.265 Sum_probs=242.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC------CCcEEEEEccCCce---
Q psy4869 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG------DRTVKVWGLDYGDC--- 1116 (2435)
Q Consensus 1046 l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~------Dg~I~vWd~~t~~~--- 1116 (2435)
+.+.+++.++...+ +.....|++.... ...|...|.+++|+|||++|++|+. |+.|++|+..++..
T Consensus 11 ~d~g~~~~~~~~~g-~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 11 VDLGTENLYFQSNG-SSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCccceEEecCC-CccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 34444444444433 5667888765432 3469999999999999999999997 77899999877643
Q ss_pred -eEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCc
Q psy4869 1117 -HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1195 (2435)
Q Consensus 1117 -~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~ 1195 (2435)
......|...|.+++|+|++. +++++.||.|++||+.+++...... ....+|...|.+++|+|++++|++|+.|+.
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~--~~~~~h~~~V~~v~~spdg~~l~sgs~dg~ 162 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNK--FAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCC--EEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred EecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEe--eccCCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 234456889999999999875 5667889999999998876543322 223578999999999999999999999999
Q ss_pred EEEEEccCCceeeEeeccCCCEEEEEEeeCCC-EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCe
Q psy4869 1196 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH-YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKS 1274 (2435)
Q Consensus 1196 V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~-~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~ 1274 (2435)
|++||+++++.+..+..|...|.+++|++++. .+++++.||.|++||+++.+.+..+.
T Consensus 163 v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~--------------------- 221 (357)
T 4g56_B 163 VKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID--------------------- 221 (357)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---------------------
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---------------------
Confidence 99999999999999999999999999999764 78899999999999988755422110
Q ss_pred EEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCc-ceeEEeecCCeEEEEEcccceEEEEec
Q psy4869 1275 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS-KLLAVSLLDTTVKIFFLDTFKFFISLY 1353 (2435)
Q Consensus 1275 v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg-~~lavgs~dG~V~v~d~~~~k~i~~~~ 1353 (2435)
.......+.+++|+|++ .+||+|+.||.|++||+.+++.+..+.
T Consensus 222 -----------------------------------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 222 -----------------------------------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA 266 (357)
T ss_dssp -----------------------------------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC
T ss_pred -----------------------------------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe
Confidence 01124568899999985 678899999999999999999999999
Q ss_pred CCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEee-CCCEEEEEeCCCcEEEEECCCce
Q psy4869 1354 GHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1354 ~h~~~V~~la~spdg-~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P-~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
+|...|.+++|+|++ ++|++|+.|+.|+|||+++++++..+ +|.++|++|+|+| ++.+|+|+|.||.|++||+....
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999999999999987 58999999999999999999987654 8999999999999 78999999999999999998654
Q ss_pred eEE
Q psy4869 1432 RIV 1434 (2435)
Q Consensus 1432 ~l~ 1434 (2435)
+..
T Consensus 346 ~~~ 348 (357)
T 4g56_B 346 RTE 348 (357)
T ss_dssp ---
T ss_pred ccc
Confidence 443
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=355.93 Aligned_cols=307 Identities=25% Similarity=0.345 Sum_probs=251.9
Q ss_pred CCeEEEEEecCCc-CEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE--E-EeccCCCEEEEEEccCCCEEEEEeCCC
Q psy4869 1071 TFKFFISLYGHKL-PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK--S-LLAHEDSVTGVTFVPKTHYFFTTSKDG 1146 (2435)
Q Consensus 1071 ~~~~~~~l~~h~~-~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~--~-l~~h~~~V~~v~fsp~~~~l~s~s~Dg 1146 (2435)
..+++..+.+|.. .|.+++|+|++++|++|+.|+.|+|||++.+.... . ..+|...|.+++|+|++++|++++.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3456778889988 99999999999999999999999999998876432 2 257999999999999999999999999
Q ss_pred cEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc---eeeEeeccCCCEEEEEEe
Q psy4869 1147 RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD---CHKSLLAHEDSVTGVTFV 1223 (2435)
Q Consensus 1147 ~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~---~~~~~~~h~~~V~~i~~s 1223 (2435)
.|++||+...... ....+.+|...|.+++|+|++++|++|+.|+.|++||++.+. ++..+..|...|.+++|+
T Consensus 84 ~v~iw~~~~~~~~----~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 84 TTCIWKKNQDDFE----CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp CEEEEEECCC-EE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred cEEEEEccCCCeE----EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 9999998765421 223456899999999999999999999999999999998764 456678899999999999
Q ss_pred eCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccccccccccccccccee
Q psy4869 1224 PKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVL 1303 (2435)
Q Consensus 1224 pd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 1303 (2435)
|++++|++++.|+.|++||.+..+..... .+
T Consensus 160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~--------------------------~~----------------------- 190 (345)
T 3fm0_A 160 PSQELLASASYDDTVKLYREEEDDWVCCA--------------------------TL----------------------- 190 (345)
T ss_dssp SSSSCEEEEETTSCEEEEEEETTEEEEEE--------------------------EE-----------------------
T ss_pred CCCCEEEEEeCCCcEEEEEecCCCEEEEE--------------------------Ee-----------------------
Confidence 99999999999999999997654321100 00
Q ss_pred eeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEccc---------------ceEEEEecC-CCCCeEEEEEecC
Q psy4869 1304 SLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT---------------FKFFISLYG-HKLPVLSLDMSYD 1367 (2435)
Q Consensus 1304 ~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~---------------~k~i~~~~~-h~~~V~~la~spd 1367 (2435)
..+...|.+++|+|+|++||+|+.||.|+||+... .+++..+.+ |...|.+++|+|+
T Consensus 191 -------~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 263 (345)
T 3fm0_A 191 -------EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263 (345)
T ss_dssp -------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT
T ss_pred -------cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC
Confidence 12346799999999999999999999999999632 234555655 8889999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc--------e-EEEecccccceEEEEEeeCC-CEEEEEeCCCcEEEEECCCceeEEEEe
Q psy4869 1368 STLIATGSGDRTVKVWGLDYGD--------C-HKSLLAHEDSVTGVTFVPKT-HYFFTTSKDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1368 g~~L~sGg~Dg~V~iwdl~~gk--------~-~~~~~~h~~~V~~laf~P~~-~~laSgg~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
+.+|++|+.|+.|++|+...+. + .....+|...|++|+|+|++ .+|||||.||.|++|++...+++.+++
T Consensus 264 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 264 TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 9999999999999999987653 1 12346899999999999998 599999999999999999988887764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=367.84 Aligned_cols=318 Identities=15% Similarity=0.203 Sum_probs=240.5
Q ss_pred EeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeC------CCCEEEEEccCCee---
Q psy4869 81 LSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSK------DTDIVLWDVVAECG--- 151 (2435)
Q Consensus 81 ~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~------Dg~I~iWd~~~~~~--- 151 (2435)
+....++ +++.+.++.....|++....+ .+|++.|++++|+|||++||+||. |+.|++|+...+.+
T Consensus 11 ~d~g~~~-~~~~~~g~~~~~~w~~p~~~p----~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 11 VDLGTEN-LYFQSNGSSKGSAWGRPVTAP----ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCccc-eEEecCCCccccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 3344444 334444567788898875544 479999999999999999999998 77899998876543
Q ss_pred -EEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccc----ccccceEEEEEEEeCCCeEEEeeCCCc
Q psy4869 152 -LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM----AAHLTEVWGVCVMREDSYLISGSNDAE 226 (2435)
Q Consensus 152 -~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~----~~h~~~V~~l~~~p~~~~l~s~s~Dg~ 226 (2435)
.....+|...|.+++|+|+ + .+++++.||+|+|||+.+++.+... .+|.+.|.+++|+|++++|++|+.|++
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d--~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~ 162 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSE--K-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162 (357)
T ss_dssp GCSEEEECSSCEEEEEEETT--T-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred EecccCCCCCCEEEEEEcCC--C-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 3445689999999999864 3 3667889999999999998865433 489999999999999999999999999
Q ss_pred EEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccc
Q psy4869 227 LKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFA 306 (2435)
Q Consensus 227 v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (2435)
|++||+++++.
T Consensus 163 v~iwd~~~~~~--------------------------------------------------------------------- 173 (357)
T 4g56_B 163 VKVWDLSQKAV--------------------------------------------------------------------- 173 (357)
T ss_dssp EEEEETTTTEE---------------------------------------------------------------------
T ss_pred EEEEECCCCcE---------------------------------------------------------------------
Confidence 99999874310
Q ss_pred cccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCC-EEEEEeCCCe
Q psy4869 307 FGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQ 385 (2435)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~-~Lasgs~Dg~ 385 (2435)
...+.+|.+.|++++|+|++. ++++++.||.
T Consensus 174 ------------------------------------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~ 205 (357)
T 4g56_B 174 ------------------------------------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205 (357)
T ss_dssp ------------------------------------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSC
T ss_pred ------------------------------------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCc
Confidence 123568999999999999875 7899999999
Q ss_pred EEEEecCCceee-EEEeeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEE
Q psy4869 386 IFIWSVYGECEN-IGVMSGHTGAVMDLKFSTD-GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLI 463 (2435)
Q Consensus 386 I~iwd~~~~~~~-~~~l~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~ll 463 (2435)
|++||++..... ...+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.+|...|.+++|+|++..+|
T Consensus 206 v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l 285 (357)
T 4g56_B 206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFL 285 (357)
T ss_dssp EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCE
T ss_pred eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEE
Confidence 999999764322 2234567889999999997 46888999999999999999999999999999999999999998899
Q ss_pred EEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcE
Q psy4869 464 ASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFND-TAECVLTGGIDNDIKMWDLRTNSV 523 (2435)
Q Consensus 464 asgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp-~g~~l~sgs~dg~V~lwD~~s~~~ 523 (2435)
++|+.|++|+|||+++++.+..+.|...|++++|+| ++++|++|+.||.|++||+.+...
T Consensus 286 asgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 286 ASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 999999999999999999888888999999999998 799999999999999999976443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=359.29 Aligned_cols=291 Identities=21% Similarity=0.238 Sum_probs=243.6
Q ss_pred cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC-----------CceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcE
Q psy4869 1080 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY-----------GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRV 1148 (2435)
Q Consensus 1080 ~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t-----------~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V 1148 (2435)
.|...|.+++|+|||++|++++ |+++++||... .........+...|.+++|+|++ .|++++.||.|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4667799999999999999887 77788886321 11112223467789999999975 68899999999
Q ss_pred EEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCC-C
Q psy4869 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT-H 1227 (2435)
Q Consensus 1149 ~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~-~ 1227 (2435)
++||+.+++...... ....+|...|++++|+|++++|++|+.|+.|++||+++++++..+.+|.+.|.+++|++++ .
T Consensus 106 ~lWd~~~~~~~~~~~--~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 106 ELWELDENETLIVSK--FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEECTTSSCEEEE--EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEeccCCCceeEee--ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 999999887665543 2345899999999999999999999999999999999999999999999999999999987 5
Q ss_pred EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeee
Q psy4869 1228 YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLH 1307 (2435)
Q Consensus 1228 ~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1307 (2435)
.|++++.|+.|++||+++.+....+...
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~---------------------------------------------------- 211 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCS---------------------------------------------------- 211 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC------------------------------------------------------
T ss_pred ceeeeccccccccccccccceeeeeecc----------------------------------------------------
Confidence 7899999999999999887654432110
Q ss_pred cccccccccEEEEEecCC-cceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeC
Q psy4869 1308 TRTLKLEEQVLCARVSPD-SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGL 1385 (2435)
Q Consensus 1308 ~~~~~~~~~i~~ia~spd-g~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg-~~L~sGg~Dg~V~iwdl 1385 (2435)
.....+.+++|+|+ +++||+|+.||.|+|||+.+++++..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+
T Consensus 212 ----~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 212 ----APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp ------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred ----eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEEC
Confidence 11345788999995 5678899999999999999999999999999999999999998 58999999999999999
Q ss_pred CCCceEEEecccccceEEEEEeeCCC-EEEEEeCCCcEEEEECCCce
Q psy4869 1386 DYGDCHKSLLAHEDSVTGVTFVPKTH-YFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1386 ~~gk~~~~~~~h~~~V~~laf~P~~~-~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
.+++++ .+.+|.++|++|+|+|++. +|+|+|.||.|++|++....
T Consensus 288 ~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 288 SLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999875 5689999999999999985 67899999999999998754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=346.39 Aligned_cols=295 Identities=27% Similarity=0.457 Sum_probs=265.9
Q ss_pred CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q psy4869 1071 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150 (2435)
Q Consensus 1071 ~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~i 1150 (2435)
.......+.+|...|.+++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF 1230 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lv 1230 (2435)
||+++++.+..+ ..|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|..+|.++.|+|++++|+
T Consensus 92 wd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 92 WDVSSGKCLKTL------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp EETTTCCEEEEE------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 999988766554 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1231 sgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+++.||.|++||+++.+.+..+..
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~~-------------------------------------------------------- 189 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLID-------------------------------------------------------- 189 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEECC--------------------------------------------------------
T ss_pred EEeCCCcEEEEECCCCceeeEEec--------------------------------------------------------
Confidence 999999999999987655432210
Q ss_pred ccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEE--EEE-ecCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLS--LDM-SYDSTLIATGSGDRTVKVWGLDY 1387 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~--la~-spdg~~L~sGg~Dg~V~iwdl~~ 1387 (2435)
.....+.+++|+|++++|++++.||.|++||+.+++.+..+.+|...+.. ..+ .+++++|++|+.||.|++||+.+
T Consensus 190 -~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 190 -DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp -SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred -cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence 11245788999999999999999999999999999999999988765432 233 46889999999999999999999
Q ss_pred CceEEEecccccceEEEEEeeCCCEEEEEe--CCCcEEEEECC
Q psy4869 1388 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428 (2435)
Q Consensus 1388 gk~~~~~~~h~~~V~~laf~P~~~~laSgg--~Dg~V~lWd~~ 1428 (2435)
++++..+.+|..+|.+++|+|++.+|++++ .||.|++|+.+
T Consensus 269 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 269 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred chhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999999999999987 69999999975
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=355.39 Aligned_cols=288 Identities=24% Similarity=0.391 Sum_probs=247.3
Q ss_pred eeEecccCCcEEEEEE-----CC-CCCEEEEEeCCCeEEEEecCCc------eeeEEEeeCCCCCeeEEEEccCCCEEEE
Q psy4869 355 IMLLEGHGGEIFCSKY-----HP-DGQYIASSGYDRQIFIWSVYGE------CENIGVMSGHTGAVMDLKFSTDGCHIFT 422 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~f-----sp-dg~~Lasgs~Dg~I~iwd~~~~------~~~~~~l~~h~~~V~~l~~s~dg~~L~s 422 (2435)
...+.||.+.|++++| ++ ++++|++|+.|+.|++||+... ......+.+|...|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 4578999999999999 76 8999999999999999998643 2345678899999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee---cCcccEEEEEECC
Q psy4869 423 CSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM---NNTYQVTSVAFND 499 (2435)
Q Consensus 423 ~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~---~~~~~v~sv~~sp 499 (2435)
++.|+.|++||+++++.+..+.+|...|.+++|+|++. +|++++.|+.|++||+......... .+...|.+++|+|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence 99999999999999999999999999999999999874 6778999999999999844332222 4677899999999
Q ss_pred CC----------CEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCce
Q psy4869 500 TA----------ECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERC 569 (2435)
Q Consensus 500 ~g----------~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~ 569 (2435)
++ .+|++|+.||.|++|| ...+....+.+|...|.+++|+|+|++|++++.|++|++||++.. ...
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~---~~~ 248 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL---TYP 248 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC---SSC
T ss_pred ccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC---ccc
Confidence 87 7999999999999999 556778889999999999999999999999999999999999532 222
Q ss_pred EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEE--Eec-----------CCCCCeeEEEEcCCCC
Q psy4869 570 VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAY--KLP-----------GHNGSVNDVQFHPKEP 636 (2435)
Q Consensus 570 v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~--~l~-----------~h~~~V~~l~fspd~~ 636 (2435)
...+.. ...+.+++|+|++++|++| .|+.|++||+.+++... .+. +|...|++++|+|+++
T Consensus 249 ~~~~~~-----~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 249 QREFDA-----GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp SEEEEC-----SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred ceeecC-----CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 333321 1258999999999988765 57789999998775433 443 6888999999999999
Q ss_pred EEEEEECCCcEEEecCC
Q psy4869 637 IIMSASSDKTIYLGESP 653 (2435)
Q Consensus 637 ~Lasgs~Dg~I~vWd~~ 653 (2435)
+|++|+.||.|++|+++
T Consensus 323 ~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp CEEEEETTSEEEEEEEE
T ss_pred eEEEecCCceEEEEEEE
Confidence 99999999999999985
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=382.90 Aligned_cols=364 Identities=14% Similarity=0.237 Sum_probs=287.8
Q ss_pred ceEEEeecCCCC-eEEEE----------EcCCeEEEEECCCCC---eEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEE
Q psy4869 77 EVCQLSPNHDSS-QLAVA----------YTNGSLKTFSLDTTD---VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIV 142 (2435)
Q Consensus 77 ~v~~~~~~~d~~-~lav~----------~~~G~i~i~d~~~~~---~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~ 142 (2435)
.+.+++|+|+++ ++|++ +.||.|++||+.+++ ++..+ +|...|++++|+|++.+||+|+.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 456899999987 88888 789999999999875 44444 5999999999999999999999999999
Q ss_pred EEEccC----CeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCc------cc---cccccccceEEEE
Q psy4869 143 LWDVVA----ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD------CF---KTMAAHLTEVWGV 209 (2435)
Q Consensus 143 iWd~~~----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~------~~---~~~~~h~~~V~~l 209 (2435)
|||+.. .+.+..+.+|.+.|.+++|+|+ ++.+|++++.|+.|++||+++++ .. ..+..|...|.++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 999987 4578889999999999999864 35689999999999999999987 33 3347899999999
Q ss_pred EEEeC-CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEE
Q psy4869 210 CVMRE-DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQV 288 (2435)
Q Consensus 210 ~~~p~-~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 288 (2435)
+|+|+ +.+|++++.|+.|++||++.++.+..
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~------------------------------------------------ 203 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIH------------------------------------------------ 203 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEE------------------------------------------------
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceE------------------------------------------------
Confidence 99999 78899999999999999885321000
Q ss_pred EEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEE
Q psy4869 289 FRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCS 368 (2435)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l 368 (2435)
+... ....+|...|.++
T Consensus 204 -----------------------------------------~~~~----------------------~~~~~~~~~v~~~ 220 (416)
T 2pm9_A 204 -----------------------------------------LSYT----------------------SPNSGIKQQLSVV 220 (416)
T ss_dssp -----------------------------------------ECCC----------------------CCSSCCCCCEEEE
T ss_pred -----------------------------------------Eecc----------------------ccccccCCceEEE
Confidence 0000 0013678899999
Q ss_pred EECCCC-CEEEEEeCCC---eEEEEecCCceeeEEEee-CCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEE
Q psy4869 369 KYHPDG-QYIASSGYDR---QIFIWSVYGECENIGVMS-GHTGAVMDLKFST-DGCHIFTCSTDQTLAVWDLEKGQRIKK 442 (2435)
Q Consensus 369 ~fspdg-~~Lasgs~Dg---~I~iwd~~~~~~~~~~l~-~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg~~v~~ 442 (2435)
+|+|++ .+|++++.|+ .|++||++........+. +|...|.+++|+| ++++|++++.|+.|++||+++++.+..
T Consensus 221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~ 300 (416)
T 2pm9_A 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ 300 (416)
T ss_dssp EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE
T ss_pred EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee
Confidence 999997 6999999999 999999987545556677 8999999999999 999999999999999999999999999
Q ss_pred EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecC---cccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN---TYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 443 l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~---~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
+.+|...|.+++|+|+++.++++++.|+.|++||+........... ........+.+.+..++.++..+.+.+
T Consensus 301 ~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 376 (416)
T 2pm9_A 301 FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL---- 376 (416)
T ss_dssp EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC----
T ss_pred ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc----
Confidence 9999999999999999888999999999999999987664433211 122233344444444443333222211
Q ss_pred CCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 520 s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
.....|...+.+++|+|||++|++++.|++|+|||+..
T Consensus 377 -----~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 377 -----QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp -----CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred -----cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 22245788899999999999999999999999999873
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=362.81 Aligned_cols=288 Identities=25% Similarity=0.476 Sum_probs=254.3
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCC------------------CCCeeEEEEccCCCEE
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGH------------------TGAVMDLKFSTDGCHI 420 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h------------------~~~V~~l~~s~dg~~L 420 (2435)
.+|.+.|.+++|+|+|++||+|+ ++.+++|++..+.. +..+..| ...|.+++|+||+++|
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL-VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE-EEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE-EEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 37999999999999999999986 78999999876532 2333333 2349999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECC-
Q psy4869 421 FTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFND- 499 (2435)
Q Consensus 421 ~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp- 499 (2435)
++++.|+.|++||+++++.+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++....+.+...+.+++|+|
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 217 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 217 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence 9999999999999999999999999999999999999884 67899999999999999999888888888999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEE-------ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCC-------
Q psy4869 500 TAECVLTGGIDNDIKMWDLRTNSVVQKL-------RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP------- 565 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~s~~~v~~l-------~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~------- 565 (2435)
++++|++|+.||.|++||+++++.+..+ .+|.+.|.+++|+|+|++|++++.|++|++||++....
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 8999999999999999999999988777 57999999999999999999999999999999975321
Q ss_pred -CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcC------CCCEE
Q psy4869 566 -GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHP------KEPII 638 (2435)
Q Consensus 566 -~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fsp------d~~~L 638 (2435)
...+...+.+|. ..+.+++|+|++++|++|+.|+.|++||.++++++..+.+|.+.|.+++|++ ++++|
T Consensus 298 ~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 298 NSGTCEVTYIGHK----DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp ---CEEEEEECCS----SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred CCCcceEEEeccc----CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence 134556677775 4789999999999999999999999999999999999999999999999986 67899
Q ss_pred EEEECCCcEEEecCC
Q psy4869 639 MSASSDKTIYLGESP 653 (2435)
Q Consensus 639 asgs~Dg~I~vWd~~ 653 (2435)
++|+.||+|++|++.
T Consensus 374 ~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 374 ATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EEECCCCcEEECccc
Confidence 999999999999985
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=351.23 Aligned_cols=290 Identities=22% Similarity=0.417 Sum_probs=256.6
Q ss_pred eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccC-----CccccccccccceEEEEEEEeCCCeEEEeeCC
Q psy4869 150 CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADT-----GDCFKTMAAHLTEVWGVCVMREDSYLISGSND 224 (2435)
Q Consensus 150 ~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~t-----g~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~D 224 (2435)
....+|.||.+.|.+++|+|. +..+|++|+.|++|++||+.. +.++..+.+|...|.+++|+|++++|++|+.|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEccccceEEEEEccCC-CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 345678999999999999863 346899999999999999865 34567889999999999999999999999999
Q ss_pred CcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCc
Q psy4869 225 AELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDD 304 (2435)
Q Consensus 225 g~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (2435)
++|++||+++++.
T Consensus 87 ~~v~~wd~~~~~~------------------------------------------------------------------- 99 (319)
T 3frx_A 87 KTLRLWDVATGET------------------------------------------------------------------- 99 (319)
T ss_dssp SEEEEEETTTTEE-------------------------------------------------------------------
T ss_pred CEEEEEECCCCCe-------------------------------------------------------------------
Confidence 9999999874310
Q ss_pred cccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCC
Q psy4869 305 FAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDR 384 (2435)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg 384 (2435)
...+.+|.+.|.+++|+|++.+|++|+.|+
T Consensus 100 --------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 129 (319)
T 3frx_A 100 --------------------------------------------------YQRFVGHKSDVMSVDIDKKASMIISGSRDK 129 (319)
T ss_dssp --------------------------------------------------EEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred --------------------------------------------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 113558999999999999999999999999
Q ss_pred eEEEEecCCceeeEEEeeCCCCCeeEEEEccC------CCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccC
Q psy4869 385 QIFIWSVYGECENIGVMSGHTGAVMDLKFSTD------GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR 458 (2435)
Q Consensus 385 ~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~d------g~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~ 458 (2435)
.|++||++.. ....+.+|...|.+++|.|+ +..|++++.|+.|++||+++++....+.+|...|.+++|+|+
T Consensus 130 ~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207 (319)
T ss_dssp CEEEEETTSC--EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT
T ss_pred eEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC
Confidence 9999999754 45678899999999999984 458999999999999999999999999999999999999998
Q ss_pred CCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEe--------cC
Q psy4869 459 GQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR--------GH 530 (2435)
Q Consensus 459 ~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~--------~h 530 (2435)
+ .+|++++.|+.|++||+++++.+..+.....+.+++|+|++.+|+++.. +.+++|++..+..+..+. .|
T Consensus 208 g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 285 (319)
T 3frx_A 208 G-TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAA 285 (319)
T ss_dssp S-SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGG
T ss_pred C-CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCc
Confidence 7 5788999999999999999999888888889999999999999988875 459999999888877764 34
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 531 SDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 531 ~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
...+.+++|+|||++|++|+.|++|+|||+.
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 6789999999999999999999999999986
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=350.18 Aligned_cols=322 Identities=17% Similarity=0.267 Sum_probs=280.4
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc---e
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD---C 1116 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~---~ 1116 (2435)
.++|.+++|+|||++++++..++.+.+|............+|...|.+++|+|++++|++++ ||.|++||+.+++ .
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence 35688999999999999998777777766555555555567999999999999999999998 9999999998765 3
Q ss_pred eEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCC
Q psy4869 1117 HKSLL--AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDR 1194 (2435)
Q Consensus 1117 ~~~l~--~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg 1194 (2435)
+..+. .|...|.+++|+|++++|++++.|+.|++||+.+.+.... .....|...|.+++|+++++++++++.||
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK----AELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE----EEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee----eecccCCCceEEEEECCCCCEEEEEeCCC
Confidence 34443 6899999999999999999999999999999988763222 23457889999999999999999999999
Q ss_pred cEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCe
Q psy4869 1195 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKS 1274 (2435)
Q Consensus 1195 ~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~ 1274 (2435)
.|++||+++++.+..+..|...|.+++|+|+++.|++++.||.|++||++..+.+..+
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------------------- 221 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---------------------- 221 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----------------------
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee----------------------
Confidence 9999999999999999999999999999999999999999999999999876543221
Q ss_pred EEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC
Q psy4869 1275 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG 1354 (2435)
Q Consensus 1275 v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~ 1354 (2435)
.....+.+++|+|++++|++++.+|.|++||+..++. ..+..
T Consensus 222 -------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~ 263 (337)
T 1gxr_A 222 -------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHL 263 (337)
T ss_dssp -------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECC
T ss_pred -------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcC
Confidence 1134578999999999999999999999999998875 46778
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEEC
Q psy4869 1355 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1427 (2435)
Q Consensus 1355 h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~ 1427 (2435)
|...|.+++|+|++++|++++.||.|++|++.+++.+.. ..|..+|++++|+|++.+|++++.||.|++||+
T Consensus 264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999999999999999999998744 468889999999999999999999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=356.06 Aligned_cols=284 Identities=19% Similarity=0.292 Sum_probs=239.8
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC----------ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCe
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG----------ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQT 428 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~----------~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~ 428 (2435)
..|...|.+++|+|||++|++++ |+.+|+||... ..........|...|.+++|++|+ .|++++.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 46788899999999999999887 77788887320 000111223456789999999985 7889999999
Q ss_pred EEEEECCCCceEEE----EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCC-
Q psy4869 429 LAVWDLEKGQRIKK----MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAE- 502 (2435)
Q Consensus 429 I~vwd~~tg~~v~~----l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~- 502 (2435)
|+|||+++++.+.. +.+|...|.+++|+|++ .+|++|+.|++|++||+++++.+..+ .|...|.+++|+|++.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 99999998875543 45899999999999987 56889999999999999999988887 4888999999999885
Q ss_pred EEEEEecCCeEEEEECCCCcEEEEEe--cCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc
Q psy4869 503 CVLTGGIDNDIKMWDLRTNSVVQKLR--GHSDTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579 (2435)
Q Consensus 503 ~l~sgs~dg~V~lwD~~s~~~v~~l~--~h~~~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~ 579 (2435)
+|++|+.||.|++||+++++.+..+. .|...+.+++|+|+ +++|++|+.|++|+|||++ ..+++..+.+|.
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~----~~~~~~~~~~h~-- 257 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK----STSCVLSSAVHS-- 257 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC----C--CCEEEECCS--
T ss_pred ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC----CCcEEEEEcCCC--
Confidence 78999999999999999999988874 46668999999995 6788999999999999998 457788888886
Q ss_pred cccCeEEEEEcCCC-CEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEecCCC
Q psy4869 580 FEKNLLRCAWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 580 ~~~~i~~v~~spdg-~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~I~vWd~~~ 654 (2435)
..|.+++|+|+| ++|++|+.|++|+|||+++++++ .+.+|.+.|++|+|+|+++ +|++||.||+|++|+++.
T Consensus 258 --~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 258 --QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp --SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred --CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 478999999998 68999999999999999998875 4679999999999999986 678999999999999973
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=351.68 Aligned_cols=291 Identities=24% Similarity=0.426 Sum_probs=243.2
Q ss_pred eEEEecCCCCCEEEEEE-----cC-CCCEEEEEeCCCCEEEEEccCC-------eeEEEEecCCCcEEEEEEeecCCCcE
Q psy4869 109 VISTFTGHKSAITVIQY-----DP-LGHRLATGSKDTDIVLWDVVAE-------CGLHRLSGHKGVITDIRFMSQPGHHF 175 (2435)
Q Consensus 109 ~~~~l~gH~~~V~~l~f-----~p-~g~~laSgs~Dg~I~iWd~~~~-------~~~~~l~gH~~~V~~v~~~~~~~~~~ 175 (2435)
....|.||++.|++++| ++ ++++||||+.|++|+|||+... .+...+.+|.+.|.+++|+| ++.+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--~~~~ 90 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ--ENCF 90 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS--STTE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC--CCCE
Confidence 56689999999999999 76 8999999999999999998653 35678899999999999985 4678
Q ss_pred EEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeec
Q psy4869 176 VVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLL 255 (2435)
Q Consensus 176 l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 255 (2435)
|++++.|++|++||+++++++.++.+|...|++++|+|++++|++++.|++|++||+......
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~----------------- 153 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF----------------- 153 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-----------------
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-----------------
Confidence 999999999999999999999999999999999999999999999999999999998621000
Q ss_pred ccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccc
Q psy4869 256 SEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKN 335 (2435)
Q Consensus 256 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~ 335 (2435)
.
T Consensus 154 ---------------------------------------------------------------------------~---- 154 (343)
T 2xzm_R 154 ---------------------------------------------------------------------------S---- 154 (343)
T ss_dssp ---------------------------------------------------------------------------E----
T ss_pred ---------------------------------------------------------------------------e----
Confidence 0
Q ss_pred eeeeeecccccCccccccceeEecccCCcEEEEEECCCC----------CEEEEEeCCCeEEEEecCCceeeEEEeeCCC
Q psy4869 336 YKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDG----------QYIASSGYDRQIFIWSVYGECENIGVMSGHT 405 (2435)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg----------~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~ 405 (2435)
.....+|...|.+++|+|++ .+|++|+.||.|++||... .....+.+|.
T Consensus 155 -------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~ 213 (343)
T 2xzm_R 155 -------------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHE 213 (343)
T ss_dssp -------------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCS
T ss_pred -------------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCcc
Confidence 00012577888899999886 7999999999999999543 3456788999
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCC-CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceE
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK-GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV 484 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t-g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~ 484 (2435)
..|.+++|+|++++|++++.|+.|++||+.. +.....+ .+...|.+++|+|++. +++ ++.|+.|++||+.+++...
T Consensus 214 ~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSC-EEE-EEESSCEEEEESSSCCSCS
T ss_pred ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCCCCCCc
Confidence 9999999999999999999999999999944 4444444 3455699999999874 444 5568889999998765433
Q ss_pred --ee------------cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Q psy4869 485 --SM------------NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTN 521 (2435)
Q Consensus 485 --~~------------~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~ 521 (2435)
.+ .+...+.+++|+|+|++|++|+.||.|++||++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 291 VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 22 24567999999999999999999999999998654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=346.04 Aligned_cols=324 Identities=17% Similarity=0.271 Sum_probs=282.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc
Q psy4869 116 HKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC 195 (2435)
Q Consensus 116 H~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~ 195 (2435)
|.+.|.+++|+|+|++++.+..++.+.+|+...........+|.+.|.+++|+| ++.+|++++ ||.|++||+.+++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCCCCc
Confidence 567899999999999999999888888887666555556669999999999985 567888888 99999999998875
Q ss_pred ccccc-----cccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEE
Q psy4869 196 FKTMA-----AHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQ 270 (2435)
Q Consensus 196 ~~~~~-----~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 270 (2435)
...+. +|...|.+++|+|++++|++++.|+.|++||++.++.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--------------------------------- 131 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--------------------------------- 131 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------------------------------
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---------------------------------
Confidence 44442 7899999999999999999999999999999874310
Q ss_pred eecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccc
Q psy4869 271 IINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSN 350 (2435)
Q Consensus 271 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 350 (2435)
T Consensus 132 -------------------------------------------------------------------------------- 131 (337)
T 1gxr_A 132 -------------------------------------------------------------------------------- 131 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 351 LFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 351 ~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
.....+.+|...|.+++|+|++++|++++.||.|++||+... .....+..|...|.+++|+|++++|++++.|+.|+
T Consensus 132 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 132 --RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred --ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECCCCCEEEEEecCCcEE
Confidence 001134578889999999999999999999999999999765 35567788999999999999999999999999999
Q ss_pred EEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC
Q psy4869 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID 510 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d 510 (2435)
+||+++++.+..+. |...+.++.|+|++ .++++++.|+.|++||++.++......+...+.+++|+|++++|++++.|
T Consensus 209 ~~d~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 286 (337)
T 1gxr_A 209 SWDLREGRQLQQHD-FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286 (337)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCceEeeec-CCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCC
Confidence 99999998887765 67778999999987 46778899999999999998877666788999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 511 NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 511 g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
|.|++||+++++.+.. ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 287 g~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 287 NLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9999999999988754 4588899999999999999999999999999974
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=353.20 Aligned_cols=297 Identities=27% Similarity=0.401 Sum_probs=255.9
Q ss_pred cccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCc------------------CEEEEEEcCCCCEEE
Q psy4869 1037 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL------------------PVLSLDMSYDSTLIA 1098 (2435)
Q Consensus 1037 ~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~------------------~V~sl~~spdg~~L~ 1098 (2435)
+.+...|.|++|+|||++||+|+ ++.+++|++.+++.+..+..|.. .|.+++|+|++++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 45788999999999999999987 78999999999998888876542 399999999999999
Q ss_pred EEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEE
Q psy4869 1099 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSL 1178 (2435)
Q Consensus 1099 Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l 1178 (2435)
+|+.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++....+ .+...+.++
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-------~~~~~v~~~ 212 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-------SIEDGVTTV 212 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------ECSSCEEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-------EcCCCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999988765544 356789999
Q ss_pred EEeC-CCCEEEEEeCCCcEEEEEccCCceeeEe-------eccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEE
Q psy4869 1179 DMSY-DSTLIATGSGDRTVKVWGLDYGDCHKSL-------LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1250 (2435)
Q Consensus 1179 ~~s~-dg~~l~sgs~Dg~V~iwd~~t~~~~~~~-------~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~ 1250 (2435)
+|+| ++++|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||++......
T Consensus 213 ~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 9999 8999999999999999999999877666 5799999999999999999999999999999987532210
Q ss_pred EEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeE
Q psy4869 1251 TLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1330 (2435)
Q Consensus 1251 ~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~la 1330 (2435)
.. . .+
T Consensus 293 ~~----------------------------~-----------------------------------------~~------ 297 (393)
T 1erj_A 293 DS----------------------------K-----------------------------------------TP------ 297 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc----------------------------c-----------------------------------------CC------
Confidence 00 0 00
Q ss_pred EeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEee--
Q psy4869 1331 VSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-- 1408 (2435)
Q Consensus 1331 vgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P-- 1408 (2435)
..+.+...+.+|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.+++|+|
T Consensus 298 -------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~ 364 (393)
T 1erj_A 298 -------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 364 (393)
T ss_dssp ----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred -------------CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCc
Confidence 01123345668899999999999999999999999999999999999999999999999999986
Q ss_pred ----CCCEEEEEeCCCcEEEEECCC
Q psy4869 1409 ----KTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1409 ----~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
++++|+|||.||.|+||++..
T Consensus 365 ~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 365 SLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=359.39 Aligned_cols=321 Identities=29% Similarity=0.576 Sum_probs=284.8
Q ss_pred CCeEEEecCCCCCE-EEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcE
Q psy4869 107 TDVISTFTGHKSAI-TVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFV 185 (2435)
Q Consensus 107 ~~~~~~l~gH~~~V-~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I 185 (2435)
......+.||.+.| .++++ +|++||+|+.||.|++||+.+++.+..+.+|.+.|.++.|+ +.+|++++.||+|
T Consensus 108 ~~~~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i 181 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTL 181 (445)
T ss_dssp CCCCEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCE
T ss_pred cceeEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeE
Confidence 34567889999864 66555 58999999999999999999999999999999999999996 3489999999999
Q ss_pred EEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceee
Q psy4869 186 KIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVS 265 (2435)
Q Consensus 186 ~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 265 (2435)
++||+++++++.++.+|...|.+++|. ++.+++|+.||+|++||+++++.
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~---------------------------- 231 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC---------------------------- 231 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE----------------------------
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE----------------------------
Confidence 999999999999999999999999985 67899999999999999874310
Q ss_pred eEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccc
Q psy4869 266 KIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDV 345 (2435)
Q Consensus 266 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 345 (2435)
T Consensus 232 -------------------------------------------------------------------------------- 231 (445)
T 2ovr_B 232 -------------------------------------------------------------------------------- 231 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC
Q psy4869 346 GRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST 425 (2435)
Q Consensus 346 ~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 425 (2435)
...+.+|...|.+++| ++.+|++|+.||.|++||+... .....+.+|...|.+++| ++.+|++++.
T Consensus 232 ---------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 297 (445)
T 2ovr_B 232 ---------LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVVSGSL 297 (445)
T ss_dssp ---------EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEEEEET
T ss_pred ---------EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--CCCEEEEEeC
Confidence 1124578889999999 7899999999999999998765 355677899999999999 7889999999
Q ss_pred CCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec----CcccEEEEEECCCC
Q psy4869 426 DQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN----NTYQVTSVAFNDTA 501 (2435)
Q Consensus 426 Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~----~~~~v~sv~~sp~g 501 (2435)
|+.|++||+++++.+..+.+|...+.++.+. +.++++++.|+.|++||+++++.+..+. +...|.+++|+ +
T Consensus 298 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 372 (445)
T 2ovr_B 298 DTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--K 372 (445)
T ss_dssp TSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--S
T ss_pred CCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--C
Confidence 9999999999999999999999988887764 2478999999999999999998888774 67789999995 6
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEE-----ecCCCCEEEEEEcCCCCEEEEEECCCc----EEEEEcCC
Q psy4869 502 ECVLTGGIDNDIKMWDLRTNSVVQKL-----RGHSDTVTGLSLSPDGSYILSNAMDNT----VRIWDIRP 562 (2435)
Q Consensus 502 ~~l~sgs~dg~V~lwD~~s~~~v~~l-----~~h~~~V~~i~~spdg~~las~s~Dg~----I~lWdl~~ 562 (2435)
++|++|+.||.|++||+++++.+..+ .+|.+.|.+++|+|++.++++|+.||+ |.+||++.
T Consensus 373 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 373 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 89999999999999999999999888 478899999999999999999999998 99999973
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=344.27 Aligned_cols=292 Identities=19% Similarity=0.324 Sum_probs=237.7
Q ss_pred ceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-eeEEEe-eC-CCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-ENIGVM-SG-HTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l-~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
....+.+|.+.|.+++|+|+ +||+|+.|+.|++||+.... .....+ .+ |.+.|.+++|+|++++|++++.|+.|+
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 34578899999999999987 99999999999999997542 333444 34 999999999999999999999999999
Q ss_pred EEECCC-------CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC----cceEee-cCcccEEEEEEC
Q psy4869 431 VWDLEK-------GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK----NQAVSM-NNTYQVTSVAFN 498 (2435)
Q Consensus 431 vwd~~t-------g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~----~~~~~~-~~~~~v~sv~~s 498 (2435)
+||++. .+.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++.. +.+..+ .|...|.+++|+
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 999853 35677889999999999999987 57889999999999999532 233334 577899999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCC--cEEEEEecCCCCEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCCCCC----ceE
Q psy4869 499 DTAECVLTGGIDNDIKMWDLRTN--SVVQKLRGHSDTVTGLSLSPD--GSYILSNAMDNTVRIWDIRPYVPGE----RCV 570 (2435)
Q Consensus 499 p~g~~l~sgs~dg~V~lwD~~s~--~~v~~l~~h~~~V~~i~~spd--g~~las~s~Dg~I~lWdl~~~~~~~----~~v 570 (2435)
|++++|++|+.|+.|++||.+++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||++...... .+.
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 99999999999999999999876 678889999999999999998 7799999999999999997432111 233
Q ss_pred EEEeC-cccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc--EEEE-ecCCCC-CeeEEEEcC--CCCEEEEEEC
Q psy4869 571 KVMSG-HQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR--IAYK-LPGHNG-SVNDVQFHP--KEPIIMSASS 643 (2435)
Q Consensus 571 ~~~~~-h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~--~~~~-l~~h~~-~V~~l~fsp--d~~~Lasgs~ 643 (2435)
..+.+ | ...|.+++|++++ +|++|+.||.|+|||..+++ .+.. +.+|.. .|++++|+| ++++|++|+.
T Consensus 243 ~~~~~~h----~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 243 AILPDVH----KRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp EECCSCC----SSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred eeccccc----ccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecC
Confidence 33433 3 3579999999765 89999999999999998874 3333 467887 899999999 6889999999
Q ss_pred CCcEEEecCC
Q psy4869 644 DKTIYLGESP 653 (2435)
Q Consensus 644 Dg~I~vWd~~ 653 (2435)
||+|++|+++
T Consensus 318 Dg~v~~W~~~ 327 (330)
T 2hes_X 318 DGIVNFWSLE 327 (330)
T ss_dssp TSEEEEEEC-
T ss_pred CCcEEEEEec
Confidence 9999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=380.89 Aligned_cols=358 Identities=11% Similarity=0.069 Sum_probs=255.5
Q ss_pred CCCCEEEEEEcCCC---------CEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEE
Q psy4869 116 HKSAITVIQYDPLG---------HRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186 (2435)
Q Consensus 116 H~~~V~~l~f~p~g---------~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~ 186 (2435)
+.+.|.+|+|+|++ ++||+|+.++.. -..+ ++..+|++++.|++|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~--~~~~~laS~s~D~tI~ 186 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLN--EHLEMFDKEKHSSCIQ 186 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-------------------------------------------CEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------Cccc--hhhhhhccCCCCceEE
Confidence 67899999999987 799999877531 0112 4556789999999999
Q ss_pred EEeccCCccc----cccccccceEEEEEEEeC------CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecc
Q psy4869 187 IWDADTGDCF----KTMAAHLTEVWGVCVMRE------DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLS 256 (2435)
Q Consensus 187 iWd~~tg~~~----~~~~~h~~~V~~l~~~p~------~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 256 (2435)
|||+.++++. .++.+|.+.|+.++|+|+ +.+|++++.||+|++||+..+......
T Consensus 187 iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~--------------- 251 (524)
T 2j04_B 187 IFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV--------------- 251 (524)
T ss_dssp EEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE---------------
T ss_pred EEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc---------------
Confidence 9999988753 345678899999999996 578999999999999998753210000
Q ss_pred cCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccce
Q psy4869 257 EDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNY 336 (2435)
Q Consensus 257 ~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~ 336 (2435)
. .
T Consensus 252 ----------------------------~--------------------------------------------~------ 253 (524)
T 2j04_B 252 ----------------------------F--------------------------------------------K------ 253 (524)
T ss_dssp ----------------------------E--------------------------------------------E------
T ss_pred ----------------------------c--------------------------------------------e------
Confidence 0 0
Q ss_pred eeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEE--EEc
Q psy4869 337 KVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDL--KFS 414 (2435)
Q Consensus 337 ~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l--~~s 414 (2435)
....|...+.+|.+.|++++|+++ .+|++|+.||.|++||+.........+.+|.+.|.+| +|+
T Consensus 254 -------------~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s 319 (524)
T 2j04_B 254 -------------MCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYS 319 (524)
T ss_dssp -------------CCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECC
T ss_pred -------------eecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcC
Confidence 001233467799999999999986 4899999999999999986544455688999999999 567
Q ss_pred cCC-CEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEE
Q psy4869 415 TDG-CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVT 493 (2435)
Q Consensus 415 ~dg-~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~ 493 (2435)
+++ .+|++++.|++|+|||+++++.+..+.+|.. ...|.
T Consensus 320 ~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~----------------------------------------~~~v~ 359 (524)
T 2j04_B 320 DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR----------------------------------------GSNLV 359 (524)
T ss_dssp TTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS----------------------------------------CCSCC
T ss_pred CCCCeEEEEeccCCeEEEEECCCCCcccccccccc----------------------------------------cCccc
Confidence 887 8999999999999999987765444443321 01255
Q ss_pred EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEE
Q psy4869 494 SVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVM 573 (2435)
Q Consensus 494 sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~ 573 (2435)
+++|+|+++.+++++.|+.|++||++++.++..+.+|.+.|++|+|+|+|++|++|+.|++|++||+... .+...
T Consensus 360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-----~~~~~ 434 (524)
T 2j04_B 360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-----LLHGI 434 (524)
T ss_dssp CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-----TTTCC
T ss_pred ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-----hcccc
Confidence 7889999999999999999999999999988889999999999999999999999999999999998632 11111
Q ss_pred eCcc-cccccCeEEEEEcCCCCEEEEecCCCeEEEEECC-CCcEEEEecCCCCCeeEEEEcCCCC---EEEEEECCCcEE
Q psy4869 574 SGHQ-HNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT-TRRIAYKLPGHNGSVNDVQFHPKEP---IIMSASSDKTIY 648 (2435)
Q Consensus 574 ~~h~-~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~-s~~~~~~l~~h~~~V~~l~fspd~~---~Lasgs~Dg~I~ 648 (2435)
..+. ......+..++|+|+|+.+.. .. .+.+|+.. ++..+..+.+|...|++|+|+|+++ .||+|+.||.|+
T Consensus 435 ~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vr 511 (524)
T 2j04_B 435 KNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLT 511 (524)
T ss_dssp ------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEE
T ss_pred ccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEE
Confidence 1000 001124568999999985532 22 23344443 5677888999999999999999965 999999999999
Q ss_pred EecCC
Q psy4869 649 LGESP 653 (2435)
Q Consensus 649 vWd~~ 653 (2435)
||++.
T Consensus 512 lw~l~ 516 (524)
T 2j04_B 512 LEYLS 516 (524)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99986
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-32 Score=356.41 Aligned_cols=346 Identities=22% Similarity=0.435 Sum_probs=286.5
Q ss_pred CeEEEecCCCCC-EEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEE
Q psy4869 108 DVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186 (2435)
Q Consensus 108 ~~~~~l~gH~~~-V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~ 186 (2435)
.....+.+|... +.+++|+ +++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+++ + +|++|+.||+|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~--~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--G-ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST--T-EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC--C-EEEEEeCCCCEE
Confidence 356688999887 5777774 689999999999999999999999999999999999999753 3 899999999999
Q ss_pred EEeccCCccccccccccceEEEEEEEe--CCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCcee
Q psy4869 187 IWDADTGDCFKTMAAHLTEVWGVCVMR--EDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTV 264 (2435)
Q Consensus 187 iWd~~tg~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 264 (2435)
+||+++++++..+.+|.+.|.+++|.+ ++.++++++.|++|++||++........... ...
T Consensus 187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~---------------~~~-- 249 (464)
T 3v7d_B 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE---------------HDY-- 249 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---------------------CCS--
T ss_pred EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc---------------CCc--
Confidence 999999999999999999999999995 6788999999999999999865422110000 000
Q ss_pred eeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeeccc
Q psy4869 265 SKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKD 344 (2435)
Q Consensus 265 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~ 344 (2435)
. .......
T Consensus 250 ------------------~-------------------------------------------~~~~~~~----------- 257 (464)
T 3v7d_B 250 ------------------P-------------------------------------------LVFHTPE----------- 257 (464)
T ss_dssp ------------------S-------------------------------------------EEESCGG-----------
T ss_pred ------------------c-------------------------------------------eEeeccC-----------
Confidence 0 0000000
Q ss_pred ccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe
Q psy4869 345 VGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS 424 (2435)
Q Consensus 345 ~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 424 (2435)
........+.+|...|.++ ++++++|++|+.||.|++||+... ..+..+.+|...|.+++|++++++|++++
T Consensus 258 -----~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 258 -----ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp -----GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred -----CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence 0001134577899999987 567999999999999999999765 35567889999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEE
Q psy4869 425 TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 425 ~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l 504 (2435)
.|+.|++||+++++.+..+.+|...|.++.+.+ .++++++.|+.|++||++++.......+...+..++|+++++++
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l 406 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL 406 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEE
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEE
Confidence 999999999999999999999999999998863 58999999999999999998888888888888999999999999
Q ss_pred EEEecCCeEEEEECCCCcEEEE-EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q psy4869 505 LTGGIDNDIKMWDLRTNSVVQK-LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560 (2435)
Q Consensus 505 ~sgs~dg~V~lwD~~s~~~v~~-l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl 560 (2435)
++|+ ||.|++||+++++.+.. +.+|.+.|.+++|+ +...+++++.|+.+.+|-+
T Consensus 407 ~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 407 VSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 9998 89999999999999986 67899999999997 3445555667776665543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=337.55 Aligned_cols=287 Identities=22% Similarity=0.390 Sum_probs=251.6
Q ss_pred eEecccCCcEEEEEECCC-CCEEEEEeCCCeEEEEecCCc----eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 356 MLLEGHGGEIFCSKYHPD-GQYIASSGYDRQIFIWSVYGE----CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~----~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
.+|+||.+.|++|+|+|+ +++|++|+.||.|+|||+... ......+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 468999999999999997 689999999999999998753 234567889999999999999999999999999999
Q ss_pred EEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee--cCcccEEEEEECCCC--CEEEE
Q psy4869 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM--NNTYQVTSVAFNDTA--ECVLT 506 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~--~~~~~v~sv~~sp~g--~~l~s 506 (2435)
+|+...+........+...+..+.+.+.+ .++++++.|+.+++||.......... .+...+.+++|++++ .++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 190 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence 99999998888888888888888877776 56789999999999999866554433 467789999998764 57889
Q ss_pred EecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEE
Q psy4869 507 GGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586 (2435)
Q Consensus 507 gs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~ 586 (2435)
++.|+.|++||+++++.+..+.+|.+.|++|+|+|++++|++++.|++|++||++. .+++..+..+. .+..
T Consensus 191 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~----~~~~~~~~~~~-----~v~~ 261 (340)
T 4aow_A 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE----GKHLYTLDGGD-----IINA 261 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT----TEEEEEEECSS-----CEEE
T ss_pred EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc----CceeeeecCCc-----eEEe
Confidence 99999999999999999999999999999999999999999999999999999983 56677766553 6889
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEec---------CCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP---------GHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 587 v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~---------~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+.|+|++.++ +++.|+.|++||++.+..+..+. +|...|++++|+|++++|++|+.||.|++||+.
T Consensus 262 ~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 262 LCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred eecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999988655 55579999999999887776653 688999999999999999999999999999986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=339.50 Aligned_cols=300 Identities=23% Similarity=0.322 Sum_probs=237.7
Q ss_pred CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCC--ceeEEE-ec-cCCCEEEEEEccCCCEEEEEeCCC
Q psy4869 1071 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG--DCHKSL-LA-HEDSVTGVTFVPKTHYFFTTSKDG 1146 (2435)
Q Consensus 1071 ~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~--~~~~~l-~~-h~~~V~~v~fsp~~~~l~s~s~Dg 1146 (2435)
..+++..+.+|..+|.+++|+++ +|++|+.|+.|++||+..+ +.+..+ .. |...|.+++|+|++++|++++.|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 45678889999999999999987 9999999999999999875 345555 34 999999999999999999999999
Q ss_pred cEEEEeCCCccee-EEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCC----ceeeEeeccCCCEEEEE
Q psy4869 1147 RVKQWDADNFERI-VTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG----DCHKSLLAHEDSVTGVT 1221 (2435)
Q Consensus 1147 ~V~iwD~~~~~~~-~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~----~~~~~~~~h~~~V~~i~ 1221 (2435)
.|++||+...... ........+.+|...|.+++|+|++++|++|+.|+.|++||++.. +++..+.+|...|.+++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 9999998643210 011123345689999999999999999999999999999999432 45677889999999999
Q ss_pred EeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccc
Q psy4869 1222 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHK 1301 (2435)
Q Consensus 1222 ~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~ 1301 (2435)
|+|++++|++++.|+.|++||.+...... +..
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~------------------------~~~------------------------ 192 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWEC------------------------VAV------------------------ 192 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEE------------------------EEE------------------------
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeE------------------------EEE------------------------
Confidence 99999999999999999999975431100 000
Q ss_pred eeeeeecccccccccEEEEEecCC--cceeEEeecCCeEEEEEcccc--------eEEEEecC-CCCCeEEEEEecCCCE
Q psy4869 1302 VLSLLHTRTLKLEEQVLCARVSPD--SKLLAVSLLDTTVKIFFLDTF--------KFFISLYG-HKLPVLSLDMSYDSTL 1370 (2435)
Q Consensus 1302 ~~~~~~~~~~~~~~~i~~ia~spd--g~~lavgs~dG~V~v~d~~~~--------k~i~~~~~-h~~~V~~la~spdg~~ 1370 (2435)
...+...|.+++|+|+ +.+|++|+.||.|++||+... .....+.. |...|.+++|++++ +
T Consensus 193 --------~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~ 263 (330)
T 2hes_X 193 --------LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-L 263 (330)
T ss_dssp --------ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-C
T ss_pred --------ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-E
Confidence 0123467899999999 778999999999999999764 44555655 89999999999765 8
Q ss_pred EEEEeCCCcEEEEeCCCCc--eEE-Eeccccc-ceEEEEEee--CCCEEEEEeCCCcEEEEECCC
Q psy4869 1371 IATGSGDRTVKVWGLDYGD--CHK-SLLAHED-SVTGVTFVP--KTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1371 L~sGg~Dg~V~iwdl~~gk--~~~-~~~~h~~-~V~~laf~P--~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
|++|+.||.|++|+...++ ++. ...+|.. .|++++|+| ++.+|+|||.||.|+|||+..
T Consensus 264 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999999999999998873 333 3467876 999999999 688999999999999999864
|
| >2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=354.18 Aligned_cols=190 Identities=22% Similarity=0.358 Sum_probs=138.0
Q ss_pred ccccCccCCCCCCCcc--cccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCC
Q psy4869 2177 TFDAREEWPQCKDVIG--KVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKG 2254 (2435)
Q Consensus 2177 ~~Dwr~~~~~~~~~v~--~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~ 2254 (2435)
-.|||+ ++ |+++ ||||||.||||| |||++++||++++|+++.
T Consensus 10 ~~dWR~-~~---~~~~it~VkdQg~CGSCW--------------------------------AFaa~~alE~~~~i~~~~ 53 (265)
T 2wbf_X 10 CNRLKD-EN---NCISNLQVEDQGNCDTSW--------------------------------IFASKYHLETIRCMKGYE 53 (265)
T ss_dssp BCGGGC-TT---STGGGSCCCBCTTSSCHH--------------------------------HHHHHHHHHHHHHHTTCC
T ss_pred HHhhcc-CC---CCCCCCCCcCCCCChhHH--------------------------------HHHHHHHHHHHHHHhcCC
Confidence 589998 22 4566 999999999999 999999999999998776
Q ss_pred CcCccCCccceecccCCCCCCCCCCCCCCCCCCChh-hHHHHHHHcC-ccCCCcccCCCCC--cccc-------------
Q psy4869 2255 QVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSA-AAWMYWINAG-LVDGGDYGTHDVS--MGRY------------- 2317 (2435)
Q Consensus 2255 ~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~-~a~~~~~~~G-i~~~~~y~~~~~~--~~~~------------- 2317 (2435)
++. ||+|+|+ ||... +++.||+||++. .+++|++++| +++|.+|||.... ..+.
T Consensus 54 ~~~--LS~Q~lv----dC~~~---~~~~GC~GG~~~~~~~~~i~~~Ggi~~e~~yPY~~~~~~~~C~~~~~~~~~~~~~~ 124 (265)
T 2wbf_X 54 PTK--ISALYVA----NCYKG---EHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNG 124 (265)
T ss_dssp CCC--BCHHHHH----HCCSS---SCCCTTTCCCCHHHHHHHHHHHCCCCBTTTSCCCGGGTTSCCCCCCTTCCCTTTTC
T ss_pred CCC--cCHHHHH----Hhhcc---cCCCCCCCCCCHHHHHHHHHHcCCCCCccccCCcCCCCCCCCCCcccccccccccc
Confidence 665 9999999 88742 246799999754 5567787887 8999999996421 1000
Q ss_pred -------------c-------------------cCcccceeecccCCcccc-----cce-eeEEEE-ecCCCcCcccceE
Q psy4869 2318 -------------I-------------------EGIGHAASVMGSSNPEVN-----NFE-KVIRLY-SCEGSINPRYIHS 2358 (2435)
Q Consensus 2318 -------------~-------------------~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~-~~~~~~~~~~~Ha 2358 (2435)
+ ..++..+...||+.+.++ .|+ .+..++ .|+. ..++||
T Consensus 125 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ik~~i~~~GPV~v~i~~~~f~~y~~~g~~~~~~c~~---~~~~Ha 201 (265)
T 2wbf_X 125 KILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGD---DTADHA 201 (265)
T ss_dssp EECCCCCSSSTTCCSSEEEEEGGGGTTCHHHHHHHHHHHHHHHSCEEEEECGGGGCSGGGGSSSEECCCCC---SCCCEE
T ss_pred ccccccCCCceeecCCceEeeccccccchhhHHHHHHHHHHhcCCEEEEEEcccccccccCCcEEcCCCCC---CcCCEE
Confidence 0 001111122355544433 232 122222 2432 357899
Q ss_pred EEEEEeccC--CCC--cceEEEEccCCCCcCCCceEEEEe-eCcccccccceeEEEeecCc
Q psy4869 2359 VKIIGWGKS--SQN--EPYWLCTNSYNQGWGEQGLFKIRR-GVNMCSIEDSVMAGEAKLEG 2414 (2435)
Q Consensus 2359 v~iVGyg~~--~~g--~~yWiikNSWG~~WG~~Gy~~i~r-~~n~cgi~~~~~~~~~~~~~ 2414 (2435)
|+|||||++ ++| ++|||||||||+.|||+|||||+| +.|+||||..+.++++++.-
T Consensus 202 V~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g~n~Cgi~~~~~~~~~~~~~ 262 (265)
T 2wbf_X 202 VNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNVDL 262 (265)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEESSCCTTCSSCSCCEEEEECEEC
T ss_pred EEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEecCCCccCcceeEEEEeccccC
Confidence 999999974 355 689999999999999999999986 67999999999999888653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=339.13 Aligned_cols=311 Identities=23% Similarity=0.433 Sum_probs=255.8
Q ss_pred EEEEeCCCCEEE--EEccCC--eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCc-----cccccccc
Q psy4869 132 LATGSKDTDIVL--WDVVAE--CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD-----CFKTMAAH 202 (2435)
Q Consensus 132 laSgs~Dg~I~i--Wd~~~~--~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~-----~~~~~~~h 202 (2435)
-++|.+.|+..+ +...+. ....+|+||.+.|++|+|+|+ ++.+|+|||.|++|+|||+.+++ +.+.+.+|
T Consensus 7 ~~~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h 85 (340)
T 4aow_A 7 HSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 85 (340)
T ss_dssp -------------------CEEEEEEEECCCSSCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC
T ss_pred cccccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC
Confidence 356666665433 333333 456789999999999999874 35689999999999999998765 35677899
Q ss_pred cceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCc
Q psy4869 203 LTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGK 282 (2435)
Q Consensus 203 ~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~ 282 (2435)
...|.+++|+|++++|++++.|+.|++|+......
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~--------------------------------------------- 120 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT--------------------------------------------- 120 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------------------------
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeecccce---------------------------------------------
Confidence 99999999999999999999999999999764210
Q ss_pred cceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccC
Q psy4869 283 KKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHG 362 (2435)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~ 362 (2435)
......|.
T Consensus 121 ------------------------------------------------------------------------~~~~~~~~ 128 (340)
T 4aow_A 121 ------------------------------------------------------------------------TRRFVGHT 128 (340)
T ss_dssp ------------------------------------------------------------------------EEEEECCS
T ss_pred ------------------------------------------------------------------------eeeecCCC
Confidence 00122345
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCC--CEEEEEeCCCeEEEEECCCCceE
Q psy4869 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG--CHIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg--~~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
..+..+.+++++.+|++|+.|+.+++||............+|...|..++|++++ ..+++++.|+.|++||+++++.+
T Consensus 129 ~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~ 208 (340)
T 4aow_A 129 KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208 (340)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred CceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence 5677788999999999999999999999987766667778899999999999864 57889999999999999999999
Q ss_pred EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCC
Q psy4869 441 KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRT 520 (2435)
Q Consensus 441 ~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s 520 (2435)
..+.+|...|.+++|+|++ .+|++|+.|+.|++||+++.+.+..+.+...+.+++|+|++.++ +++.|+.|++||+++
T Consensus 209 ~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 209 TNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEG 286 (340)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTT
T ss_pred eEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCC
Confidence 9999999999999999987 57889999999999999999999999888899999999987654 566799999999999
Q ss_pred CcEEEEE---------ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 521 NSVVQKL---------RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 521 ~~~v~~l---------~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
+..+..+ .+|...|++++|+|||++|++|+.||+|+|||+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 8877665 36889999999999999999999999999999974
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=373.59 Aligned_cols=340 Identities=8% Similarity=0.067 Sum_probs=249.9
Q ss_pred cceEEEeecCCC---------CeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEc
Q psy4869 76 HEVCQLSPNHDS---------SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDV 146 (2435)
Q Consensus 76 ~~v~~~~~~~d~---------~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~ 146 (2435)
..|.+++|+|++ ++||+|..++.. ...+|++..||+|+.|++|+|||+
T Consensus 134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~D~tI~iWd~ 190 (524)
T 2j04_B 134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKHSSCIQIFKM 190 (524)
T ss_dssp C--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEEEE
T ss_pred CceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCCCceEEEEEc
Confidence 356688999887 789999765420 114789999999999999999999
Q ss_pred cCCee----EEEEecCCCcEEEEEEeec----CCCcEEEEEeCCCcEEEEeccCCccc-----------cccccccceEE
Q psy4869 147 VAECG----LHRLSGHKGVITDIRFMSQ----PGHHFVVSSAKDTFVKIWDADTGDCF-----------KTMAAHLTEVW 207 (2435)
Q Consensus 147 ~~~~~----~~~l~gH~~~V~~v~~~~~----~~~~~l~S~s~Dg~I~iWd~~tg~~~-----------~~~~~h~~~V~ 207 (2435)
.+.+. ..++.+|.+.|.+|+|+|. +++.+|++++.||+|+|||+.++.+. .++.+|...|.
T Consensus 191 ~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~ 270 (524)
T 2j04_B 191 NTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLIT 270 (524)
T ss_dssp ETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEE
T ss_pred cCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEE
Confidence 77653 2457789999999999986 23568999999999999999877532 36688999999
Q ss_pred EEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEE
Q psy4869 208 GVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQ 287 (2435)
Q Consensus 208 ~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~ 287 (2435)
+++|+++ ..|++|+.||+|++||++++.
T Consensus 271 sv~~s~~-~~lasgs~DgtV~lWD~~~~~--------------------------------------------------- 298 (524)
T 2j04_B 271 TFDFLSP-TTVVCGFKNGFVAEFDLTDPE--------------------------------------------------- 298 (524)
T ss_dssp EEEESSS-SEEEEEETTSEEEEEETTBCS---------------------------------------------------
T ss_pred EEEecCC-CeEEEEeCCCEEEEEECCCCC---------------------------------------------------
Confidence 9999976 489999999999999987321
Q ss_pred EEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEE
Q psy4869 288 VFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFC 367 (2435)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~ 367 (2435)
.|...+.+|.+.|.+
T Consensus 299 -----------------------------------------------------------------~~~~~~~~H~~~V~s 313 (524)
T 2j04_B 299 -----------------------------------------------------------------VPSFYDQVHDSYILS 313 (524)
T ss_dssp -----------------------------------------------------------------SCSEEEECSSSCEEE
T ss_pred -----------------------------------------------------------------CceEEeecccccEEE
Confidence 011235689999999
Q ss_pred E--EECCCC-CEEEEEeCCCeEEEEecCCceeeEEEeeCCC--CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q psy4869 368 S--KYHPDG-QYIASSGYDRQIFIWSVYGECENIGVMSGHT--GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK 442 (2435)
Q Consensus 368 l--~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~--~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~ 442 (2435)
+ .|+|+| ++||+|+.|++|+|||++.... ...+.+|. ..|.+++|+|+++.|++++.|++|++||++++..+..
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~ 392 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP 392 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee
Confidence 9 578888 8999999999999999976432 22344554 3589999999999999999999999999999998888
Q ss_pred EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee------cCcccEEEEEECCCCCEEEEEecCCeEEEE
Q psy4869 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM------NNTYQVTSVAFNDTAECVLTGGIDNDIKMW 516 (2435)
Q Consensus 443 l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~------~~~~~v~sv~~sp~g~~l~sgs~dg~V~lw 516 (2435)
+.+|...|++++|+|+++ +|++|+.|++|++||+..+. .... .....+.+++|+|+++.+. .. +.+.+|
T Consensus 393 l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~--~~~~~~ 467 (524)
T 2j04_B 393 LVSRETTITAIGVSRLHP-MVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID--SSYEVY 467 (524)
T ss_dssp EEECSSCEEEEECCSSCC-BCEEEETTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSCEEE-EC--CCCCCC
T ss_pred eecCCCceEEEEeCCCCC-eEEEEECCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCCeEE-cc--CCceec
Confidence 999999999999999885 57899999999999986542 2211 1122577999999998552 22 223344
Q ss_pred ECC-CCcEEEEEecCCCCEEEEEEcCCCC---EEEEEECCCcEEEEEcC
Q psy4869 517 DLR-TNSVVQKLRGHSDTVTGLSLSPDGS---YILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 517 D~~-s~~~v~~l~~h~~~V~~i~~spdg~---~las~s~Dg~I~lWdl~ 561 (2435)
+.. ++..+..+.+|...|.+|+|+|++. .+|+|+.||+|+||+++
T Consensus 468 ~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 468 PLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp C-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred ccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 433 5667888999999999999999954 99999999999999997
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=369.95 Aligned_cols=329 Identities=17% Similarity=0.156 Sum_probs=281.9
Q ss_pred CCEEEEEEcCCCC-EEEEE----------ECCCcEEEEEcCCCe---EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcE
Q psy4869 1041 EQVLCARVSPDSK-LLAVS----------LLDTTVKIFFLDTFK---FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1106 (2435)
Q Consensus 1041 ~~v~~l~~spdg~-~Lavg----------~~dg~V~i~d~~~~~---~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I 1106 (2435)
..|.+++|+|+|+ +|++| +.|+.|++|++.+++ .+..+ .|...|.+++|+|++++|++|+.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 3567899999997 99999 789999999998765 33333 588999999999999999999999999
Q ss_pred EEEEccC----CceeEEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCcc------eeEEEEEEEeecccccCe
Q psy4869 1107 KVWGLDY----GDCHKSLLAHEDSVTGVTFVPK-THYFFTTSKDGRVKQWDADNFE------RIVTLHFFISLYGHKLPV 1175 (2435)
Q Consensus 1107 ~vWd~~t----~~~~~~l~~h~~~V~~v~fsp~-~~~l~s~s~Dg~V~iwD~~~~~------~~~~~~~~~~~~~h~~~V 1175 (2435)
++||+.. .+.+..+..|...|.+++|+|+ +++|++++.|+.|++||+.+.. ....+ .....|...|
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~v 168 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP---GQSMSSVDEV 168 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC---CCSCCSSCCC
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc---ccccCCCCCe
Confidence 9999987 4578888899999999999998 8899999999999999998876 22221 1235788999
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEEccCCceeeEeecc------CCCEEEEEEeeCC-CEEEEEECCC---cEEEEECC
Q psy4869 1176 LSLDMSYD-STLIATGSGDRTVKVWGLDYGDCHKSLLAH------EDSVTGVTFVPKT-HYFFTTSKDG---RVKQWDAD 1244 (2435)
Q Consensus 1176 ~~l~~s~d-g~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h------~~~V~~i~~spd~-~~lvsgs~Dg---~I~vwD~~ 1244 (2435)
.+++|+++ +.+|++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++.|+ .|++||++
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 99999998 789999999999999999999988888776 7899999999986 6899999998 99999987
Q ss_pred CCce-EEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEec
Q psy4869 1245 NFER-IVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1323 (2435)
Q Consensus 1245 ~~~~-v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~s 1323 (2435)
.... +..+ ...+...+.+++|+
T Consensus 249 ~~~~~~~~~---------------------------------------------------------~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 249 NANTPLQTL---------------------------------------------------------NQGHQKGILSLDWC 271 (416)
T ss_dssp STTSCSBCC---------------------------------------------------------CSCCSSCEEEEEEC
T ss_pred CCCCCcEEe---------------------------------------------------------ecCccCceeEEEeC
Confidence 6421 0000 00235679999999
Q ss_pred C-CcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceEEEec------
Q psy4869 1324 P-DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGLDYGDCHKSLL------ 1395 (2435)
Q Consensus 1324 p-dg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg-~~L~sGg~Dg~V~iwdl~~gk~~~~~~------ 1395 (2435)
| ++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++|++|+.|+.|++|++..++......
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 351 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQ 351 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccc
Confidence 9 99999999999999999999999999999999999999999999 899999999999999998875422111
Q ss_pred -----------------------------ccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1396 -----------------------------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1396 -----------------------------~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
.|..+|++++|+|++.+|++++.||.|+|||+.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 352 QESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16778999999999999999999999999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=363.09 Aligned_cols=368 Identities=13% Similarity=0.159 Sum_probs=278.9
Q ss_pred eecCCCCeEEEEEcCCeEEEEECCCCCeEEEe-cCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccC---Ce---eEE
Q psy4869 82 SPNHDSSQLAVAYTNGSLKTFSLDTTDVISTF-TGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVA---EC---GLH 153 (2435)
Q Consensus 82 ~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l-~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~---~~---~~~ 153 (2435)
.+++++..++.+. .|+ .+++.+..+ .+|.+.|++++|+| ++.+||+|+.||.|+|||+.. .. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4677777777654 377 456788888 99999999999999 999999999999999999876 32 233
Q ss_pred EEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEecc---CCcccccccc------------ccceEEEEE--EEeCCC
Q psy4869 154 RLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDAD---TGDCFKTMAA------------HLTEVWGVC--VMREDS 216 (2435)
Q Consensus 154 ~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~---tg~~~~~~~~------------h~~~V~~l~--~~p~~~ 216 (2435)
.+ +|.+.|.+++|+| ++.+|++++.||+|++||++ +++.+..+.+ +...+.++. +++++.
T Consensus 107 ~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 107 TY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp EE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred ec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 33 6999999999985 56789999999999999995 6666554433 344555555 446788
Q ss_pred eEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeec
Q psy4869 217 YLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCIS 296 (2435)
Q Consensus 217 ~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 296 (2435)
+|++++.|+.|++||++.++.+
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~---------------------------------------------------------- 205 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERL---------------------------------------------------------- 205 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEE----------------------------------------------------------
T ss_pred EEEEEeCCCeEEEEeCCCCeee----------------------------------------------------------
Confidence 9999999999999998753210
Q ss_pred ccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecc--cCCcEEEEEECCCC
Q psy4869 297 SITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEG--HGGEIFCSKYHPDG 374 (2435)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~g--H~~~V~~l~fspdg 374 (2435)
..+.+ |.+.|++++|+|++
T Consensus 206 -----------------------------------------------------------~~~~~~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 206 -----------------------------------------------------------QIIENSPRHGAVSSICIDEEC 226 (437)
T ss_dssp -----------------------------------------------------------EEEECCGGGCCEEEEEECTTS
T ss_pred -----------------------------------------------------------EEEccCCCCCceEEEEECCCC
Confidence 11223 78899999999999
Q ss_pred CEEEEEeCCCeEEEEecCCceeeEEEee-CCCCCeeEEEEcc----CCCEEEEEeCCCeEEEEECCCCceEEEEeccCcc
Q psy4869 375 QYIASSGYDRQIFIWSVYGECENIGVMS-GHTGAVMDLKFST----DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTF 449 (2435)
Q Consensus 375 ~~Lasgs~Dg~I~iwd~~~~~~~~~~l~-~h~~~V~~l~~s~----dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~ 449 (2435)
++|++|+.||.|++||++... .+..+. .|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.+|...
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ 305 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC
T ss_pred CEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC
Confidence 999999999999999998753 344443 7888999997664 6779999999999999999999999999999998
Q ss_pred ccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEec
Q psy4869 450 VNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529 (2435)
Q Consensus 450 v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~ 529 (2435)
+..+.|.+.+..+ .+.. +.+
T Consensus 306 ~~~~~~~~~~~~l-----~~~~-------------------------------------------------------~~~ 325 (437)
T 3gre_A 306 PSMEHFLPIEKGL-----EELN-------------------------------------------------------FCG 325 (437)
T ss_dssp CCGGGGSCBCSSG-----GGCC-------------------------------------------------------CCC
T ss_pred Cccceeccccccc-----ccce-------------------------------------------------------ecc
Confidence 8888888765322 0000 333
Q ss_pred --CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEE
Q psy4869 530 --HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYI 607 (2435)
Q Consensus 530 --h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~i 607 (2435)
|...|.+++|+ ++++|++++.|+.|++||++ ..++...+.+|... ...+....++++..+++..
T Consensus 326 ~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------- 391 (437)
T 3gre_A 326 IRSLNALSTISVS-NDKILLTDEATSSIVMFSLN----ELSSSKAVISPSRF-SDVFIPTQVTANLTMLLRK-------- 391 (437)
T ss_dssp CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT----CGGGCEEEECC--C-CCEEEEEEEETTEEEEEEE--------
T ss_pred cccCCceEEEEEC-CceEEEecCCCCeEEEEECC----CcccceEEeccccc-CceEEEEEeecceEEEEEe--------
Confidence 78889999999 77889999999999999988 35666777766432 2345566677776666555
Q ss_pred EECCCCcEEEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEec
Q psy4869 608 WDTTTRRIAYKLPGHNGSVNDVQFHPK--EPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 608 wd~~s~~~~~~l~~h~~~V~~l~fspd--~~~Lasgs~Dg~I~vWd 651 (2435)
|+...+........|...|++++|+++ +.+|++|+.||.|++|+
T Consensus 392 ~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 344444555566679999999999998 77999999999999995
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=359.35 Aligned_cols=344 Identities=19% Similarity=0.234 Sum_probs=279.1
Q ss_pred EEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecC
Q psy4869 79 CQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGH 158 (2435)
Q Consensus 79 ~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH 158 (2435)
..++|+|++++|++++.||.+++||+.+++....+.+| ..+....|++++++||+|+.|+.|+|||+.+++....+.+|
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 138 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH 138 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence 46889999999999999999999999988777777777 55566688999999999999999999999999888888999
Q ss_pred CCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCc
Q psy4869 159 KGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDI 238 (2435)
Q Consensus 159 ~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~ 238 (2435)
.+.|.+++|+| ++.+|++++.|++|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||+++++.+
T Consensus 139 ~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 139 VSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 99999999985 4568999999999999999999999999999999999999999999999999999999999865322
Q ss_pred cccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhh
Q psy4869 239 DTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTR 318 (2435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (2435)
...... ......+..
T Consensus 217 ~~~~~~-------------~~~~~~v~~---------------------------------------------------- 231 (420)
T 3vl1_A 217 HTFNRK-------------ENPHDGVNS---------------------------------------------------- 231 (420)
T ss_dssp EEECBT-------------TBTTCCEEE----------------------------------------------------
T ss_pred EEeecC-------------CCCCCCccE----------------------------------------------------
Confidence 111000 000000000
Q ss_pred hcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeE
Q psy4869 319 SMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENI 398 (2435)
Q Consensus 319 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~ 398 (2435)
+.+.... .......|...|.+++|+|+|++|++|+.||.|++||+.......
T Consensus 232 --------~~~~~~~--------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 232 --------IALFVGT--------------------DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI 283 (420)
T ss_dssp --------EEEEECC--------------------CSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE
T ss_pred --------EEEecCC--------------------cceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE
Confidence 0000000 001234567788899999999999999999999999998776655
Q ss_pred EEeeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCc-eEEEEec-cCccccccCcccCCCeEEEEEeCCCeEEEE
Q psy4869 399 GVMSGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEKGQ-RIKKMKG-HSTFVNSCDPVRRGQLLIASGSDDCTVKVW 475 (2435)
Q Consensus 399 ~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~tg~-~v~~l~~-h~~~v~sv~~~~~~~~llasgs~Dg~I~vw 475 (2435)
.....|...|.+++|+|++. +|++++.||.|++||+++++ .+..+.+ |...+.++.+ +++ .++++++.|+.|++|
T Consensus 284 ~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~-~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 284 QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAG-ALFVSSGFDTSIKLD 361 (420)
T ss_dssp EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETT-EEEEEETTTEEEEEE
T ss_pred EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCC-CEEEEecCCccEEEE
Confidence 55667999999999999998 99999999999999999875 4677776 5667777744 544 688999999999999
Q ss_pred eCCCCc----------ceEeecCcccEEEEEECCCCC---EEEEEecCCeEEEEECCC
Q psy4869 476 DPRKKN----------QAVSMNNTYQVTSVAFNDTAE---CVLTGGIDNDIKMWDLRT 520 (2435)
Q Consensus 476 D~~~~~----------~~~~~~~~~~v~sv~~sp~g~---~l~sgs~dg~V~lwD~~s 520 (2435)
|+.... ......+...+.+++|+|+++ .+++++.+|.+.+|++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 362 IISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 987632 223335677899999999999 788888899999999864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-31 Score=333.88 Aligned_cols=287 Identities=18% Similarity=0.324 Sum_probs=257.5
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
...+.+|.+.|++++|+|+|++|++|+.||.|++||+... .....+.+|.+.|.+++|+|++++|++++.|+.|++||+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 3578999999999999999999999999999999998765 355678899999999999999999999999999999999
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCC-----CeEEEEeCCCCcceE-----------ee-cCcc--cEEEE
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD-----CTVKVWDPRKKNQAV-----------SM-NNTY--QVTSV 495 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D-----g~I~vwD~~~~~~~~-----------~~-~~~~--~v~sv 495 (2435)
.+++.+..+. |...+.++.|.+++. .+++++.+ +.|++||++...... .+ .+.. .+.++
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCcEEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 9999998888 888899999999885 55667777 999999987654321 11 2333 89999
Q ss_pred EECCCCCEEEEEecCCeEEEEECCC-CcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEe
Q psy4869 496 AFNDTAECVLTGGIDNDIKMWDLRT-NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMS 574 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~dg~V~lwD~~s-~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~ 574 (2435)
+|+|++++|++|+.||.|++||+++ ++.+..+..|...|.+++|+|++++|++++.|+.|++||++. .+.+..+.
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~ 257 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST----LQVLKKYE 257 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----CCEEEEEE
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC----Cceeeeec
Confidence 9999999999999999999999999 788999999999999999999999999999999999999984 45666665
Q ss_pred CcccccccCeEEEEEcCCCCEEEEecCCC--------------eEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEE
Q psy4869 575 GHQHNFEKNLLRCAWSVSGLYVTAGSADK--------------CVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640 (2435)
Q Consensus 575 ~h~~~~~~~i~~v~~spdg~~Lasgs~Dg--------------~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Las 640 (2435)
. ...+..+.|+|+++++++++.++ .+++||..+++.+..+.+|...|++++|+|++++|++
T Consensus 258 ~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 258 T-----DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYAS 332 (369)
T ss_dssp C-----SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred C-----CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEE
Confidence 2 24789999999999999999988 8999999999999999999999999999999999999
Q ss_pred EECCCcEEEecCC
Q psy4869 641 ASSDKTIYLGESP 653 (2435)
Q Consensus 641 gs~Dg~I~vWd~~ 653 (2435)
++.||.|++|+++
T Consensus 333 ~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 333 GGEDGFIRLHHFE 345 (369)
T ss_dssp EETTSEEEEEEEC
T ss_pred EcCCCeEEEEECc
Confidence 9999999999997
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=351.70 Aligned_cols=344 Identities=14% Similarity=0.106 Sum_probs=273.4
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe
Q psy4869 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1121 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~ 1121 (2435)
.+++++|+|+|++|++++.||.|++|+..+++....+..| ..+....|++++++|++|+.||.|++||+++++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3457899999999999999999999999877665555555 344555789999999999999999999999999888888
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q psy4869 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1122 ~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~ 1201 (2435)
.|...|.+++|+|++++|++++.|+.|++||+.+++....+ .+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL------IGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE------ECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 99999999999999999999999999999999988776655 489999999999999999999999999999999
Q ss_pred cCCceeeEeec---cCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEE
Q psy4869 1202 DYGDCHKSLLA---HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLW 1278 (2435)
Q Consensus 1202 ~t~~~~~~~~~---h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iw 1278 (2435)
++++.+..+.. |...|.++.|.+.+...+ +.. .........+.+.+..+++++.|+.|++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQL----------HEI------STSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp TTTEEEEEECBTTBTTCCEEEEEEEECCCSSC----------GGG------CCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred CCCceeEEeecCCCCCCCccEEEEecCCccee----------eec------ccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 99998888874 566788888765432110 000 00112233445555566666666666666
Q ss_pred EcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcc-eeEEeecCCeEEEEEcccce-EEEEecC-C
Q psy4869 1279 QLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFK-FFISLYG-H 1355 (2435)
Q Consensus 1279 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~-~lavgs~dG~V~v~d~~~~k-~i~~~~~-h 1355 (2435)
|++..... ......+...+.+++|+|+++ +|++|+.||.|++||+.+++ ++..+.. |
T Consensus 275 d~~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 334 (420)
T 3vl1_A 275 NVFSKEQT--------------------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE 334 (420)
T ss_dssp ETTTCCEE--------------------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST
T ss_pred ECCCCcee--------------------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC
Confidence 66422210 011113456799999999999 99999999999999999864 4667776 5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC---------ceEEEecccccceEEEEEeeCCC---EEEEEeCCCcEE
Q psy4869 1356 KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG---------DCHKSLLAHEDSVTGVTFVPKTH---YFFTTSKDGRVK 1423 (2435)
Q Consensus 1356 ~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~g---------k~~~~~~~h~~~V~~laf~P~~~---~laSgg~Dg~V~ 1423 (2435)
...|.++. .+++++|++|+.|+.|++|++... .....+..|...|.+++|+|++. .++++|.+|.+.
T Consensus 335 ~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~ 413 (420)
T 3vl1_A 335 GTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCA 413 (420)
T ss_dssp TSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEE
T ss_pred CCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEE
Confidence 66777774 568899999999999999998873 22334567889999999999998 888899999999
Q ss_pred EEECCC
Q psy4869 1424 QWDADN 1429 (2435)
Q Consensus 1424 lWd~~~ 1429 (2435)
+|++.+
T Consensus 414 ~~~~~~ 419 (420)
T 3vl1_A 414 LYNLSN 419 (420)
T ss_dssp EEESCC
T ss_pred EEeccC
Confidence 999875
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-31 Score=366.15 Aligned_cols=287 Identities=22% Similarity=0.360 Sum_probs=250.1
Q ss_pred eEecccCCcEEEEEECCCC-CEEEEEeCCCeEEEEecCCc----eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDG-QYIASSGYDRQIFIWSVYGE----CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~----~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
..+++|.+.|++++|+|++ ++|++|+.||.|++||+... ......+.+|...|.+++|++++++|++|+.|+.|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 4688999999999999874 79999999999999998643 223457889999999999999999999999999999
Q ss_pred EEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee----cCcccEEEEEECCCC--CEE
Q psy4869 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM----NNTYQVTSVAFNDTA--ECV 504 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~----~~~~~v~sv~~sp~g--~~l 504 (2435)
+||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||.......... .|...|.+++|+|++ .+|
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 99999999999999999999999999987 45789999999999998755433322 366789999999987 689
Q ss_pred EEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCe
Q psy4869 505 LTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL 584 (2435)
Q Consensus 505 ~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i 584 (2435)
++|+.||.|++||+++++....+.+|.+.|++++|+|+|++|++++.|++|++||++. .+++..+..+ ..+
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~----~~~~~~~~~~-----~~v 605 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE----GKKLYSLEAN-----SVI 605 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT----TEEEECCBCS-----SCE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC----CceEEEecCC-----CcE
Confidence 9999999999999999999999999999999999999999999999999999999984 4555544433 368
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCC-------------------CCeeEEEEcCCCCEEEEEECCC
Q psy4869 585 LRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHN-------------------GSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 585 ~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~-------------------~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
.+++|+|++.+|++++ |+.|+|||+++++.+..+..|. ..+++++|+|++++|++|+.||
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 9999999999888776 5569999999999887775432 2378999999999999999999
Q ss_pred cEEEecCC
Q psy4869 646 TIYLGESP 653 (2435)
Q Consensus 646 ~I~vWd~~ 653 (2435)
.|++|++.
T Consensus 685 ~i~iW~i~ 692 (694)
T 3dm0_A 685 VIRVWGIG 692 (694)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99999985
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=342.26 Aligned_cols=288 Identities=15% Similarity=0.171 Sum_probs=257.5
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-----eeEEEeeCCCCCeeEEEEccC----C---CEEEE
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-----ENIGVMSGHTGAVMDLKFSTD----G---CHIFT 422 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-----~~~~~l~~h~~~V~~l~~s~d----g---~~L~s 422 (2435)
...+.+|.+.|++++|+| ++|++|+.||.|++||+.... .....+.+|...|.+++|+++ + ++|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 356889999999999998 899999999999999997653 245677899999999999999 9 99999
Q ss_pred EeCCCeEEEEECCCCce-----EEEEecc-----CccccccCcc----cCCCeEEEEEeCCCeEEEEeCCC------Ccc
Q psy4869 423 CSTDQTLAVWDLEKGQR-----IKKMKGH-----STFVNSCDPV----RRGQLLIASGSDDCTVKVWDPRK------KNQ 482 (2435)
Q Consensus 423 ~s~Dg~I~vwd~~tg~~-----v~~l~~h-----~~~v~sv~~~----~~~~~llasgs~Dg~I~vwD~~~------~~~ 482 (2435)
++.|+.|++||+.+++. +..+..| ...|.++.|. +++..+|++++.|+.|++||++. ++.
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999999887 8899988 5889999999 88765488999999999999988 555
Q ss_pred eE-----ee--------cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEec---C---CCCEEEEEEcCCC
Q psy4869 483 AV-----SM--------NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG---H---SDTVTGLSLSPDG 543 (2435)
Q Consensus 483 ~~-----~~--------~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~---h---~~~V~~i~~spdg 543 (2435)
+. .+ .+...+.+++|+|++ +|++|+.||.|++||+++++.+..+.. | ...|.+++|+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~ 245 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 245 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence 54 44 257789999999999 999999999999999999999999999 9 9999999999999
Q ss_pred CEEEEEECC---CcEEEEEcCCCCCCCceEEEEeC-------------cccccccCeEEEEEcCCCCEEEEecCCCeEEE
Q psy4869 544 SYILSNAMD---NTVRIWDIRPYVPGERCVKVMSG-------------HQHNFEKNLLRCAWSVSGLYVTAGSADKCVYI 607 (2435)
Q Consensus 544 ~~las~s~D---g~I~lWdl~~~~~~~~~v~~~~~-------------h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~i 607 (2435)
++|++++.| +.|++||++. .+++..+.+ |. ..+.+++|+|++++|++|+.||.|++
T Consensus 246 ~~l~~~~~d~~~g~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 246 SLLAIAHDSNSFGCITLYETEF----GERIGSLSVPTHSSQASLGEFAHS----SWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp TEEEEEEEETTEEEEEEEETTT----CCEEEEECBC--------CCBSBS----SCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CEEEEEecCCCCceEEEEECCC----CcccceeccCcccccccccccccC----CcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 999999999 9999999984 567777766 43 47899999999999999999999999
Q ss_pred EECCCCcEEEEec------CC---------------CCCeeEEEEcCCC----------CEEEEEECCCcEEEecCC
Q psy4869 608 WDTTTRRIAYKLP------GH---------------NGSVNDVQFHPKE----------PIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 608 wd~~s~~~~~~l~------~h---------------~~~V~~l~fspd~----------~~Lasgs~Dg~I~vWd~~ 653 (2435)
||+++++++..+. +| ...|++++|+|++ ++|++|+.||.|++|++.
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 9999999999999 88 9999999999998 799999999999999985
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-30 Score=336.99 Aligned_cols=311 Identities=26% Similarity=0.380 Sum_probs=277.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe
Q psy4869 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1121 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~ 1121 (2435)
.+.|+.+ +|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +++|++|+.||.|++||+.+++.+..+.
T Consensus 121 v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 196 (445)
T 2ovr_B 121 VITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY 196 (445)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence 3566554 68999999999999999999999999999999999999997 6799999999999999999999999999
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q psy4869 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1122 ~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~ 1201 (2435)
+|...|.++.|+ ++.+++++.|+.|++||+.+++....+ ..|...|.++++ ++.++++|+.||.|++||+
T Consensus 197 ~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~------~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~ 266 (445)
T 2ovr_B 197 GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL------MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDP 266 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE------ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEG
T ss_pred CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE------cCCcccEEEEEE--CCCEEEEEcCCCEEEEEEC
Confidence 999999999995 678999999999999999988766554 479999999999 6889999999999999999
Q ss_pred cCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcc
Q psy4869 1202 DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLE 1281 (2435)
Q Consensus 1202 ~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~ 1281 (2435)
++++.+..+..|...|.++.| ++..+++++.||.|++||+++.+.+..+..
T Consensus 267 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------------------- 317 (445)
T 2ovr_B 267 ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG--------------------------- 317 (445)
T ss_dssp GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC---------------------------
T ss_pred CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC---------------------------
Confidence 999999999999999999999 789999999999999999988765443321
Q ss_pred cccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC---CCCC
Q psy4869 1282 LVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG---HKLP 1358 (2435)
Q Consensus 1282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~---h~~~ 1358 (2435)
+...+.++.+ ++++|++|+.||.|++||+.+++.+..+.. |..+
T Consensus 318 -------------------------------~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 364 (445)
T 2ovr_B 318 -------------------------------HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364 (445)
T ss_dssp -------------------------------CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred -------------------------------CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence 1223445554 577999999999999999999999999986 8889
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEe-----cccccceEEEEEeeCCCEEEEEeCCCc----EEEEECCC
Q psy4869 1359 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL-----LAHEDSVTGVTFVPKTHYFFTTSKDGR----VKQWDADN 1429 (2435)
Q Consensus 1359 V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~-----~~h~~~V~~laf~P~~~~laSgg~Dg~----V~lWd~~~ 1429 (2435)
|.+++|+ +++|++|+.||.|++||+.+++++..+ .+|.++|++++|+|++.+|++|+.||. |.+||++.
T Consensus 365 v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 365 VTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999995 689999999999999999999999887 578899999999999999999999997 99999986
Q ss_pred c
Q psy4869 1430 F 1430 (2435)
Q Consensus 1430 ~ 1430 (2435)
.
T Consensus 443 ~ 443 (445)
T 2ovr_B 443 D 443 (445)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-30 Score=328.05 Aligned_cols=297 Identities=18% Similarity=0.265 Sum_probs=264.9
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD 1152 (2435)
.....+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 44556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC-----CcEEEEEccCCc-----------eeeEeeccCC-
Q psy4869 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD-----RTVKVWGLDYGD-----------CHKSLLAHED- 1215 (2435)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D-----g~V~iwd~~t~~-----------~~~~~~~h~~- 1215 (2435)
+.+++....+. +...|.+++|++++.++++++.+ +.|++||+..+. .+..+..|..
T Consensus 103 ~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 103 VSNGQCVATWK-------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp TTTCCEEEEEE-------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred CCCCcEEEEee-------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 99887766542 78899999999999999999999 999999998764 3344556666
Q ss_pred -CEEEEEEeeCCCEEEEEECCCcEEEEECCCC-ceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccc
Q psy4869 1216 -SVTGVTFVPKTHYFFTTSKDGRVKQWDADNF-ERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEET 1293 (2435)
Q Consensus 1216 -~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~-~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~ 1293 (2435)
.+.+++|+|+++.|++++.||.|++||++.. +.+..+.
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------------------------- 215 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID---------------------------------------- 215 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE----------------------------------------
T ss_pred cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe----------------------------------------
Confidence 9999999999999999999999999999873 3222111
Q ss_pred cccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEE
Q psy4869 1294 KDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIAT 1373 (2435)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~s 1373 (2435)
.+...+.+++|+|++++|++++.||.|++||+.+++.+..+. +...+..++|+|+++++++
T Consensus 216 ------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 216 ------------------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIIL 276 (369)
T ss_dssp ------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred ------------------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEE
Confidence 124568899999999999999999999999999999988888 7789999999999999999
Q ss_pred EeCCC--------------cEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEE
Q psy4869 1374 GSGDR--------------TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1435 (2435)
Q Consensus 1374 Gg~Dg--------------~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~ 1435 (2435)
|+.++ .|++||+.+++++..+.+|...|++++|+|++.+|++++.||.|++||+........
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence 99998 899999999999999999999999999999999999999999999999987554333
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-30 Score=339.02 Aligned_cols=320 Identities=20% Similarity=0.370 Sum_probs=270.5
Q ss_pred ceecCCCccce-EEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEc
Q psy4869 68 ALLLPGEKHEV-CQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDV 146 (2435)
Q Consensus 68 ~~~~~g~~~~v-~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~ 146 (2435)
...+.||...+ .++.+ ++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ +|++|+.||+|++||+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 34566777764 55555 56799999999999999999999999999999999999999988 9999999999999999
Q ss_pred cCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc-----------------------cccccccc
Q psy4869 147 VAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC-----------------------FKTMAAHL 203 (2435)
Q Consensus 147 ~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~-----------------------~~~~~~h~ 203 (2435)
.+++.+..+.+|.+.|.+++|++.+++.+|++++.|++|++||++++.. +..+.+|.
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 9999999999999999999999877788999999999999999988764 34567888
Q ss_pred ceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCcc
Q psy4869 204 TEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKK 283 (2435)
Q Consensus 204 ~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~ 283 (2435)
..|.++ .++++++++++.|+.|++||+++++.
T Consensus 271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~---------------------------------------------- 302 (464)
T 3v7d_B 271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC---------------------------------------------- 302 (464)
T ss_dssp SCEEEE--EEETTEEEEEETTSCEEEEETTTTEE----------------------------------------------
T ss_pred ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE----------------------------------------------
Confidence 888876 67899999999999999999874310
Q ss_pred ceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCC
Q psy4869 284 KWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGG 363 (2435)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~ 363 (2435)
...+.+|..
T Consensus 303 -----------------------------------------------------------------------~~~~~~~~~ 311 (464)
T 3v7d_B 303 -----------------------------------------------------------------------LYILSGHTD 311 (464)
T ss_dssp -----------------------------------------------------------------------EEEECCCSS
T ss_pred -----------------------------------------------------------------------EEEecCCCC
Confidence 113457889
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM 443 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l 443 (2435)
.|.+++|+|++++|++|+.||.|++||+..+ ..+..+.+|...|.+++|+ +.+|++++.||.|++||+.+++.....
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY 388 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee
Confidence 9999999999999999999999999999765 3566788999999999997 579999999999999999988766555
Q ss_pred eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe--ecCcccEEEEEECCCCCEEEEEecCCeEEEE
Q psy4869 444 KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS--MNNTYQVTSVAFNDTAECVLTGGIDNDIKMW 516 (2435)
Q Consensus 444 ~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~--~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lw 516 (2435)
. |...+..+.+.+++. ++++++ |+.|++||+++++.+.. ..+...|.+++|+ +..++++++.||.+.+|
T Consensus 389 ~-~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 389 H-HTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp E-CTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred c-CCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 3 556677778888774 666677 89999999999998875 3678889999997 34455556667765544
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-30 Score=335.28 Aligned_cols=293 Identities=16% Similarity=0.177 Sum_probs=257.9
Q ss_pred EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc------eeEEEeccCCCEEEEEEccC----C---CEEE
Q psy4869 1074 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD------CHKSLLAHEDSVTGVTFVPK----T---HYFF 1140 (2435)
Q Consensus 1074 ~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~------~~~~l~~h~~~V~~v~fsp~----~---~~l~ 1140 (2435)
....+.+|...|.+++|+| ++|++|+.||.|++||+..++ .+..+..|...|.+++|+|+ + ++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 3456678999999999998 799999999999999999888 78888999999999999999 9 9999
Q ss_pred EEeCCCcEEEEeCCCcce-----eEEEEEEEeeccc-----ccCeEEEEEe----CCCCE-EEEEeCCCcEEEEEccC--
Q psy4869 1141 TTSKDGRVKQWDADNFER-----IVTLHFFISLYGH-----KLPVLSLDMS----YDSTL-IATGSGDRTVKVWGLDY-- 1203 (2435)
Q Consensus 1141 s~s~Dg~V~iwD~~~~~~-----~~~~~~~~~~~~h-----~~~V~~l~~s----~dg~~-l~sgs~Dg~V~iwd~~t-- 1203 (2435)
+++.|+.|++||+.+... ... +..| ...|.+++|+ +++.+ |++++.||.|++||++.
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEK------LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEE------ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEcCCCCEEEEEccCCccccccccee------ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 999999999999987765 333 3466 5899999999 99999 99999999999999998
Q ss_pred ----Cceee-----Ee-------eccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEE
Q psy4869 1204 ----GDCHK-----SL-------LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVV 1267 (2435)
Q Consensus 1204 ----~~~~~-----~~-------~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv 1267 (2435)
++.+. .+ ..|...|.+++|+|++ .|++++.||.|++||+++.+.+..+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------ 226 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ------------ 226 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC------------
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc------------
Confidence 66666 66 3489999999999999 9999999999999999876554433210
Q ss_pred EEECCCeEEEEEcccccccccccccccccccccceeeeeecccccc---cccEEEEEecCCcceeEEeecC---CeEEEE
Q psy4869 1268 TGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL---EEQVLCARVSPDSKLLAVSLLD---TTVKIF 1341 (2435)
Q Consensus 1268 ~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~ia~spdg~~lavgs~d---G~V~v~ 1341 (2435)
..+ ...+.+++|+|++++|++++.| |.|++|
T Consensus 227 -------------------------------------------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 227 -------------------------------------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp -------------------------------------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred -------------------------------------------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence 001 4568999999999999999999 999999
Q ss_pred EcccceEEEEecC-------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEec------cc-----
Q psy4869 1342 FLDTFKFFISLYG-------------HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL------AH----- 1397 (2435)
Q Consensus 1342 d~~~~k~i~~~~~-------------h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~------~h----- 1397 (2435)
|+.+++.+..+.+ |...|.+++|+|++++|++|+.|+.|++||+.+++++..+. +|
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 9999999999998 99999999999999999999999999999999999999998 88
Q ss_pred ----------ccceEEEEEeeCC----------CEEEEEeCCCcEEEEECCCc
Q psy4869 1398 ----------EDSVTGVTFVPKT----------HYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1398 ----------~~~V~~laf~P~~----------~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
..+|++++|+|++ .+|++++.||.|++||+.+.
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999998764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-31 Score=343.16 Aligned_cols=350 Identities=17% Similarity=0.282 Sum_probs=254.4
Q ss_pred CCeEEEEECCCCCeEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccCCeeEEEE-------------ecCCCc
Q psy4869 96 NGSLKTFSLDTTDVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECGLHRL-------------SGHKGV 161 (2435)
Q Consensus 96 ~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~~~~~~~l-------------~gH~~~ 161 (2435)
++.+++|+++..+....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+......+ .+|.+.
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45577888888889999999999999999999 9999999999999999999886644333 269999
Q ss_pred EEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCC---CeEEEeeCCCcEEEEEcCCCCCc
Q psy4869 162 ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRED---SYLISGSNDAELKVWNVRDRSDI 238 (2435)
Q Consensus 162 V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~---~~l~s~s~Dg~v~vwdl~~~~~~ 238 (2435)
|.+++|+|. ++.+|++++.||.|++||+++++.+..+. +...+.++++.+.+ .++++++.|+.|++||++.++.
T Consensus 102 v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~- 178 (408)
T 4a11_B 102 VETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC- 178 (408)
T ss_dssp EEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-
T ss_pred EEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-
Confidence 999999863 45579999999999999999999887775 67889999999854 4899999999999999874311
Q ss_pred cccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhh
Q psy4869 239 DTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTR 318 (2435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (2435)
T Consensus 179 -------------------------------------------------------------------------------- 178 (408)
T 4a11_B 179 -------------------------------------------------------------------------------- 178 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCC-EEEEEeCCCeEEEEecCCceee
Q psy4869 319 SMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECEN 397 (2435)
Q Consensus 319 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~ 397 (2435)
...+.+|.+.|.+++|+|++. +|++|+.||.|++||++.....
T Consensus 179 ------------------------------------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~ 222 (408)
T 4a11_B 179 ------------------------------------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222 (408)
T ss_dssp ------------------------------------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred ------------------------------------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence 113457889999999999998 5999999999999999765433
Q ss_pred EEEe---------------eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeE
Q psy4869 398 IGVM---------------SGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLL 462 (2435)
Q Consensus 398 ~~~l---------------~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~l 462 (2435)
...+ ..|...|.+++|+|++++|++++.|+.|++||+.+++....+.++..... ..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~---- 293 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS-----KK---- 293 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC-----SS----
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc-----cc----
Confidence 3333 57899999999999999999999999999999998775433332211000 00
Q ss_pred EEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCC
Q psy4869 463 IASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPD 542 (2435)
Q Consensus 463 lasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spd 542 (2435)
.+........+..+++++.++.|++||+.+++.+..+.+|.+.|.+++|+|+
T Consensus 294 ----------------------------~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 294 ----------------------------GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp ----------------------------CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT
T ss_pred ----------------------------cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC
Confidence 0001111233455677788999999999999999999999999999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC-CCCEEEEecCCCeEEEEECCC
Q psy4869 543 GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV-SGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 543 g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~V~iwd~~s 612 (2435)
+++|++++.||.|++||++.. +.+....... ....+.+ +...+.+.+.|+.+++|+...
T Consensus 346 ~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 346 FQELYSGSRDCNILAWVPSLY----EPVPDDDETT-------TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp TTEEEEEETTSCEEEEEECC---------------------------------------------------
T ss_pred CCEEEEECCCCeEEEEeCCCC----CccCCCCceE-------eccccccccceeecccCccCceeecCCcc
Confidence 999999999999999999853 2222222111 1112222 334455667889999998653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-30 Score=362.76 Aligned_cols=291 Identities=26% Similarity=0.460 Sum_probs=251.6
Q ss_pred eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCc-----cccccccccceEEEEEEEeCCCeEEEeeCCC
Q psy4869 151 GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD-----CFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225 (2435)
Q Consensus 151 ~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~-----~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg 225 (2435)
....+.+|.+.|++|+|+++ +..+|+|||.|++|++||+.++. +.+.+.+|...|.+++|+|++++|++|+.|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEECCSSCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred hhhhcccCCceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 34568999999999999864 45689999999999999997643 3467789999999999999999999999999
Q ss_pred cEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCcc
Q psy4869 226 ELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDF 305 (2435)
Q Consensus 226 ~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 305 (2435)
+|++||++++..
T Consensus 453 ~v~vwd~~~~~~-------------------------------------------------------------------- 464 (694)
T 3dm0_A 453 ELRLWDLAAGVS-------------------------------------------------------------------- 464 (694)
T ss_dssp EEEEEETTTTEE--------------------------------------------------------------------
T ss_pred cEEEEECCCCcc--------------------------------------------------------------------
Confidence 999999874310
Q ss_pred ccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCe
Q psy4869 306 AFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQ 385 (2435)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~ 385 (2435)
...+.+|.+.|.+++|+|++++|++|+.|+.
T Consensus 465 -------------------------------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~ 495 (694)
T 3dm0_A 465 -------------------------------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495 (694)
T ss_dssp -------------------------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred -------------------------------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 0134589999999999999999999999999
Q ss_pred EEEEecCCceeeEE--EeeCCCCCeeEEEEccCC--CEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCe
Q psy4869 386 IFIWSVYGECENIG--VMSGHTGAVMDLKFSTDG--CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQL 461 (2435)
Q Consensus 386 I~iwd~~~~~~~~~--~l~~h~~~V~~l~~s~dg--~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~ 461 (2435)
|++||......... ...+|...|.+++|+|++ ..|++++.|+.|++||+++++....+.+|...|.+++|+|++ .
T Consensus 496 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-~ 574 (694)
T 3dm0_A 496 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG-S 574 (694)
T ss_dssp EEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-S
T ss_pred EEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC-C
Confidence 99999865433221 124689999999999986 589999999999999999999999999999999999999987 5
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCC----------
Q psy4869 462 LIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS---------- 531 (2435)
Q Consensus 462 llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~---------- 531 (2435)
+|++|+.|+.|++||+++++.+..+.+...+.+++|+|++.++++++ ++.|++||+++++.+..+..|.
T Consensus 575 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 575 LCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp EEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------
T ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccc
Confidence 78899999999999999999988888888999999999998887765 5669999999999888775432
Q ss_pred ---------CCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 532 ---------DTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 532 ---------~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
..+++++|+|||++|++|+.||+|+|||+.
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 137899999999999999999999999986
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.5e-29 Score=360.81 Aligned_cols=442 Identities=11% Similarity=0.105 Sum_probs=331.4
Q ss_pred eEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCC------CCEEEEEccCCee
Q psy4869 78 VCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKD------TDIVLWDVVAECG 151 (2435)
Q Consensus 78 v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~D------g~I~iWd~~~~~~ 151 (2435)
+...+|++ .+||.++. +.|++|++..++. ..+.+|...|.+++|+|||++||.++.+ ..|.+||+.++.
T Consensus 17 ~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~-~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~- 91 (1045)
T 1k32_A 17 LLNPDIHG--DRIIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE- 91 (1045)
T ss_dssp CEEEEEET--TEEEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-
T ss_pred EeCcEEeC--CEEEEEEC-CcEEEEECCCCcE-EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-
Confidence 44667775 47777754 7999999988764 5678899999999999999999988654 479999988776
Q ss_pred EEEEecCCCcE-------EEEEEeecCCCcEEEEEeCC------CcEEEEeccCCccccccccccceEEEEEEEeCCCeE
Q psy4869 152 LHRLSGHKGVI-------TDIRFMSQPGHHFVVSSAKD------TFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYL 218 (2435)
Q Consensus 152 ~~~l~gH~~~V-------~~v~~~~~~~~~~l~S~s~D------g~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l 218 (2435)
...+.+|.+.+ ..++|+|+. .++++++.| ..|.+||+.+|+.......+ ...++|+| | ++
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg--~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---~~~~~~sp-G-~l 164 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDG--NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP---ATHILFAD-G-RR 164 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTC--CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS---CSEEEEET-T-EE
T ss_pred eEEcccCCCcccccccccccccCCCCC--EEEEEECCcCCCcccceEEEEECCCCCeEEecCCC---cceeeeCC-C-EE
Confidence 67788999998 999998653 478888765 35778888877653322222 23566888 7 87
Q ss_pred EEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeeccc
Q psy4869 219 ISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSI 298 (2435)
Q Consensus 219 ~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 298 (2435)
++++.+.....|+...+.
T Consensus 165 ~~~~~~~~~~~~~~~~g~-------------------------------------------------------------- 182 (1045)
T 1k32_A 165 VIGRNTFELPHWKGYRGG-------------------------------------------------------------- 182 (1045)
T ss_dssp EEEESCSCCTTSTTCCST--------------------------------------------------------------
T ss_pred EEeccCCCccccccccCC--------------------------------------------------------------
Confidence 777755432222211100
Q ss_pred ccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEE
Q psy4869 299 TLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIA 378 (2435)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~La 378 (2435)
....+.+++.. . ....+.+|.+.+.++.|+++ .+++
T Consensus 183 ------------------------~~~~lw~~~~~-~------------------~~~~l~~~~~~v~~~~~s~d-~l~~ 218 (1045)
T 1k32_A 183 ------------------------TRGKIWIEVNS-G------------------AFKKIVDMSTHVSSPVIVGH-RIYF 218 (1045)
T ss_dssp ------------------------TCCEEEEEEET-T------------------EEEEEECCSSCCEEEEEETT-EEEE
T ss_pred ------------------------CcCCEEEECCC-C------------------CeEECcCCCCcccceEEeCC-EEEE
Confidence 00011111100 0 01234689999999999988 6777
Q ss_pred EEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEec-----------cC
Q psy4869 379 SSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKG-----------HS 447 (2435)
Q Consensus 379 sgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~-----------h~ 447 (2435)
+++.||.++||.+.........+..|. .+..++|+|||++|+.+. ++.|++||+..+ .+..+.+ |.
T Consensus 219 ~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~ 295 (1045)
T 1k32_A 219 ITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISI 295 (1045)
T ss_dssp EECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEEC
T ss_pred EEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccc
Confidence 888899999998753222333445554 467789999999888874 899999999544 3445554 34
Q ss_pred ccccccCcc-cCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcc-cEEEEEECCCCCEEEEEecCCeEE-EEECCCCcEE
Q psy4869 448 TFVNSCDPV-RRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTY-QVTSVAFNDTAECVLTGGIDNDIK-MWDLRTNSVV 524 (2435)
Q Consensus 448 ~~v~sv~~~-~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~-~v~sv~~sp~g~~l~sgs~dg~V~-lwD~~s~~~v 524 (2435)
..+..+.|+ |++..++.. + ++.|.+|++..+.......+.. .+..++|+ +|+.|+.++.++.|. +||+..++..
T Consensus 296 ~~v~~~~~S~pdG~~la~~-~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~ 372 (1045)
T 1k32_A 296 PSKFAEDFSPLDGDLIAFV-S-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE 372 (1045)
T ss_dssp GGGGEEEEEECGGGCEEEE-E-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred cccceeeecCCCCCEEEEE-E-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce
Confidence 468899999 998665544 4 7899999998876555445555 79999999 999999999888999 9999887654
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC-
Q psy4869 525 QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK- 603 (2435)
Q Consensus 525 ~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg- 603 (2435)
. +.+|...+..++|+|||++|++++.|+.|++||+.. ++......+|. ..+..++|+|||++|+.++.++
T Consensus 373 ~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t----g~~~~~~~~~~----~~v~~~~~SpDG~~la~~~~~~~ 443 (1045)
T 1k32_A 373 K-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET----GKPTVIERSRE----AMITDFTISDNSRFIAYGFPLKH 443 (1045)
T ss_dssp E-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT----CCEEEEEECSS----SCCCCEEECTTSCEEEEEEEECS
T ss_pred E-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC----CceEEeccCCC----CCccceEECCCCCeEEEEecCcc
Confidence 4 448888999999999999999999999999999973 45555555553 3567899999999999887644
Q ss_pred ---------eEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 604 ---------CVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 604 ---------~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.|++||+.+++ +..+..|...+..++|+||++.|+.++.++...+|+..
T Consensus 444 ~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 444 GETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp STTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 89999999988 67788899999999999999999999999988888753
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=332.63 Aligned_cols=289 Identities=17% Similarity=0.260 Sum_probs=242.0
Q ss_pred ceeEecccCCcEEEEEECCCC-CEEEEEeCCCeEEEEecCCceeeE-EEeeCCCCCeeEEEEcc-CCCEEEEEeCCCeEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDG-QYIASSGYDRQIFIWSVYGECENI-GVMSGHTGAVMDLKFST-DGCHIFTCSTDQTLA 430 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~-~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~ 430 (2435)
....+.+|.+.|++++|+|++ ++|++|+.||.|++||+....... ....+|.+.|.+++|+| ++.+|++++.|+.|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 345778999999999999999 999999999999999998543322 22347999999999999 778999999999999
Q ss_pred EEECCCCceEEEEecc---CccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCC-EEE
Q psy4869 431 VWDLEKGQRIKKMKGH---STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAE-CVL 505 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h---~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~-~l~ 505 (2435)
+||+++ +.+..+..| ...+.+++|+|++. +|++++.|+.|++||++ ++.+..+ .|...|.+++|+|+++ +|+
T Consensus 145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp EEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred EEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 999985 566666554 47799999999874 67899999999999995 4455544 5888999999999999 999
Q ss_pred EEecCCeEEEEECCC----CcEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc-
Q psy4869 506 TGGIDNDIKMWDLRT----NSVVQKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN- 579 (2435)
Q Consensus 506 sgs~dg~V~lwD~~s----~~~v~~l~~h~~~V~~i~~sp-dg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~- 579 (2435)
+|+.||.|++||+++ ++.+..+ +|.+.|.+++|+| ++++|++++.|+.|++||++... .+..+.+|...
T Consensus 222 s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~ 296 (383)
T 3ei3_B 222 TSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS----KPDQIIIHPHRQ 296 (383)
T ss_dssp EEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT----SCSEEEECCBCC
T ss_pred EEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc----cccccccccccc
Confidence 999999999999998 6677666 6999999999999 99999999999999999998543 23333333211
Q ss_pred ------------cccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC--CCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 580 ------------FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG--HNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 580 ------------~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~--h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
....+..++|+|+|++ +|+.|+.|++||+.+++++..+.+ |...+.+++|+|++++|++|+ ||
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 1134555777788777 888999999999999999999987 567788889999999999997 99
Q ss_pred cEEEecCC
Q psy4869 646 TIYLGESP 653 (2435)
Q Consensus 646 ~I~vWd~~ 653 (2435)
.|++|+++
T Consensus 374 ~i~iw~~~ 381 (383)
T 3ei3_B 374 NILIWNRE 381 (383)
T ss_dssp EEEEEECC
T ss_pred cEEEEecC
Confidence 99999986
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=332.47 Aligned_cols=299 Identities=20% Similarity=0.255 Sum_probs=251.7
Q ss_pred EcCCCeEEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEEccCCceeEEEe--ccCCCEEEEEEcc-CCCEEEEEe
Q psy4869 1068 FLDTFKFFISLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVP-KTHYFFTTS 1143 (2435)
Q Consensus 1068 d~~~~~~~~~l~~h~~~V~sl~~spdg-~~L~Sgs~Dg~I~vWd~~t~~~~~~l~--~h~~~V~~v~fsp-~~~~l~s~s 1143 (2435)
+....+....+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 345667777889999999999999999 999999999999999999888877775 5999999999999 779999999
Q ss_pred CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEe
Q psy4869 1144 KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1223 (2435)
Q Consensus 1144 ~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~s 1223 (2435)
.|+.|++||++. .....+ .....+...|.+++|++++.+|++|+.|+.|++||+ .++.+..+..|...|.+++|+
T Consensus 139 ~d~~i~iwd~~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~ 213 (383)
T 3ei3_B 139 IRGATTLRDFSG-SVIQVF---AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFN 213 (383)
T ss_dssp TTTEEEEEETTS-CEEEEE---ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEEC
T ss_pred CCCEEEEEECCC-CceEEE---eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEEC
Confidence 999999999985 333322 223445688999999999999999999999999999 477888899999999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccce
Q psy4869 1224 PKTH-YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKV 1302 (2435)
Q Consensus 1224 pd~~-~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~ 1302 (2435)
|+++ +|++++.|+.|++||++..+... ..+.
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------------------~~~~-------------------------- 245 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKN----------------------SYIA-------------------------- 245 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTT----------------------CEEE--------------------------
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCccc----------------------ceEE--------------------------
Confidence 9998 99999999999999987632100 0000
Q ss_pred eeeeecccccccccEEEEEecC-CcceeEEeecCCeEEEEEcccceEEEEecCCC-----------------CCeEEEEE
Q psy4869 1303 LSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK-----------------LPVLSLDM 1364 (2435)
Q Consensus 1303 ~~~~~~~~~~~~~~i~~ia~sp-dg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~-----------------~~V~~la~ 1364 (2435)
...+...+.+++|+| ++++|++++.||.|++||+.+++....+.+|. +.+..++|
T Consensus 246 -------~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 246 -------EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp -------EEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred -------EecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence 002356799999999 99999999999999999999877666655443 34556777
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCceEEEecc--cccceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1365 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA--HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1365 spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~--h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
+|||++ +|+.|+.|++||+.+++++..+.+ |...+..++|+|++.+|++++ ||.|++||+++
T Consensus 319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 888877 888999999999999999999886 567888889999999999997 99999999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=314.93 Aligned_cols=296 Identities=22% Similarity=0.280 Sum_probs=260.2
Q ss_pred CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q psy4869 1071 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150 (2435)
Q Consensus 1071 ~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~i 1150 (2435)
..+....+.+|...|.+++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 45778889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEee-CCCEE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYF 1229 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp-d~~~l 1229 (2435)
|++........+ ..+..|...|.+++| +++++++++.||.|++|| .++.+..+..|...|.++.|.| +++.+
T Consensus 86 ~~~~~~~~~~~~---~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 86 VPLFATSGEDPL---YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EETTCCTTSCC----CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred EEeeecCCCCcc---cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 998765432222 134579999999999 578999999999999999 6777888889999999999999 99999
Q ss_pred EEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecc
Q psy4869 1230 FTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1309 (2435)
Q Consensus 1230 vsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1309 (2435)
++++.||.|++||... .... +
T Consensus 159 ~~~~~d~~i~i~d~~~--~~~~--------------------------~------------------------------- 179 (313)
T 3odt_A 159 LTASADKTIKLWQNDK--VIKT--------------------------F------------------------------- 179 (313)
T ss_dssp EEEETTSCEEEEETTE--EEEE--------------------------E-------------------------------
T ss_pred EEEECCCCEEEEecCc--eEEE--------------------------E-------------------------------
Confidence 9999999999998321 1111 1
Q ss_pred cccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q psy4869 1310 TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1389 (2435)
Q Consensus 1310 ~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk 1389 (2435)
...+...+.+++|+|++. |++++.+|.|++||+.+++.+..+.+|.++|.+++|+|++ .|++|+.|+.|++||+.+++
T Consensus 180 ~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 180 SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence 011356789999999999 9999999999999999999999999999999999999999 58999999999999999999
Q ss_pred eEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEEE
Q psy4869 1390 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436 (2435)
Q Consensus 1390 ~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~~ 1436 (2435)
++..+..|..+|++++|+|++. |++++.||.|++||+...+.+...
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 258 LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9999999999999999999998 667999999999999986665543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=329.79 Aligned_cols=287 Identities=17% Similarity=0.221 Sum_probs=250.3
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
++..|.++|++++|+|+|++|++|+.||.|++||+.... .....+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 456799999999999999999999999999999997653 3566788999999999999999999999999999999998
Q ss_pred CCceEEEE--eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc---eEee--cCcccEEEEEECCCCCEEEEEe
Q psy4869 436 KGQRIKKM--KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ---AVSM--NNTYQVTSVAFNDTAECVLTGG 508 (2435)
Q Consensus 436 tg~~v~~l--~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~---~~~~--~~~~~v~sv~~sp~g~~l~sgs 508 (2435)
+++....+ ..|...+.++.|++++ .++++++.|+.|++||++.+.. .... .+...|.+++|+|++++|++|+
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 88755444 6788999999999987 5778899999999999988763 2222 4678899999999999999999
Q ss_pred cCCeEEEEEC------------------CCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceE
Q psy4869 509 IDNDIKMWDL------------------RTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCV 570 (2435)
Q Consensus 509 ~dg~V~lwD~------------------~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v 570 (2435)
.||.|++||+ ..++.+..+.+|.+.|.+++|+|++++|++++.|+.|++||++. .+++
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~ 237 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK----KMAV 237 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG----TTEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC----Ccee
Confidence 9999999995 46788999999999999999999999999999999999999984 5677
Q ss_pred EEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC--CcE--------------------------------E
Q psy4869 571 KVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT--RRI--------------------------------A 616 (2435)
Q Consensus 571 ~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s--~~~--------------------------------~ 616 (2435)
..+..|. ..+.+++|+|++++|++| .|+.|++||+.+ ++. .
T Consensus 238 ~~~~~~~----~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
T 1k8k_C 238 ATLASET----LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 312 (372)
T ss_dssp EEEECSS----CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred EEEccCC----CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence 8887764 378999999999999988 899999999987 421 0
Q ss_pred ------EEe-cCCCCCeeEEEEc-CCC---CEEEEEECCCcEEEecCC
Q psy4869 617 ------YKL-PGHNGSVNDVQFH-PKE---PIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 617 ------~~l-~~h~~~V~~l~fs-pd~---~~Lasgs~Dg~I~vWd~~ 653 (2435)
..+ .+|.+.|++++|+ +++ ++|++|+.||.|++|++.
T Consensus 313 ~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 313 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp ------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred cCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 223 4899999999977 666 899999999999999986
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=327.65 Aligned_cols=292 Identities=18% Similarity=0.282 Sum_probs=244.6
Q ss_pred eEecccCCcEEEEEECCCCCEE-EEEeC---CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccC---CCEEEEEeCCCe
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYI-ASSGY---DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD---GCHIFTCSTDQT 428 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~L-asgs~---Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~d---g~~L~s~s~Dg~ 428 (2435)
.++++|.+.|++++|+|++..+ ++|+. ||.|++||+...........+|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4678899999999999999655 56665 9999999998765444445579999999999998 699999999999
Q ss_pred EEEEECCCCc-eEEEEeccCccccccC------cccCCCeEEEEEeCCCeEEEEeCCCCc-ceEeec-C----cccEEEE
Q psy4869 429 LAVWDLEKGQ-RIKKMKGHSTFVNSCD------PVRRGQLLIASGSDDCTVKVWDPRKKN-QAVSMN-N----TYQVTSV 495 (2435)
Q Consensus 429 I~vwd~~tg~-~v~~l~~h~~~v~sv~------~~~~~~~llasgs~Dg~I~vwD~~~~~-~~~~~~-~----~~~v~sv 495 (2435)
|++||+.+++ .+..+.+|...|.++. |++++ .+|++++.|+.|++||++.+. ....+. + ...+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999988 8899999999999984 45665 578899999999999999876 555552 2 3378888
Q ss_pred E----ECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcC---CCCEEEEEECCCcEEEEEcCCCCCCCc
Q psy4869 496 A----FNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP---DGSYILSNAMDNTVRIWDIRPYVPGER 568 (2435)
Q Consensus 496 ~----~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~sp---dg~~las~s~Dg~I~lWdl~~~~~~~~ 568 (2435)
+ |+|++++|++|+.||.|++||+++++.... ..|...|.+++|+| ++++|++++.||.|++||++.......
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 8 789999999999999999999999987544 66889999999999 999999999999999999985332211
Q ss_pred e-EEEEeCcccccccCeEEEEEcCCCC-EEEEecCCCeEEEEECCCC-------------------cEEEEecCCCCCee
Q psy4869 569 C-VKVMSGHQHNFEKNLLRCAWSVSGL-YVTAGSADKCVYIWDTTTR-------------------RIAYKLPGHNGSVN 627 (2435)
Q Consensus 569 ~-v~~~~~h~~~~~~~i~~v~~spdg~-~Lasgs~Dg~V~iwd~~s~-------------------~~~~~l~~h~~~V~ 627 (2435)
. ...+.+|. ..+.+++|+|+++ +|++|+.||.|++||++.+ +++..+.+|...|+
T Consensus 250 ~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 250 FASVSEKAHK----STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp EEEEEEECCS----SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred eeeeccCCCc----CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 1 11223553 4789999999998 8999999999999998754 46778889999999
Q ss_pred EEEEcCCCCEEE-EEECCCcEEEecCC
Q psy4869 628 DVQFHPKEPIIM-SASSDKTIYLGESP 653 (2435)
Q Consensus 628 ~l~fspd~~~La-sgs~Dg~I~vWd~~ 653 (2435)
+++|+|++++|+ +++.||.|++|++.
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 999999999888 89999999999986
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=347.53 Aligned_cols=304 Identities=16% Similarity=0.197 Sum_probs=239.3
Q ss_pred CeEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccCCee--EEEEecCCCcEEEEEEeecCCCcEEEEEeCCCc
Q psy4869 108 DVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECG--LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTF 184 (2435)
Q Consensus 108 ~~~~~l~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~~~~--~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~ 184 (2435)
.......+|...|+||+|+| ++++||+|+.||.|+|||+..... ...+.+|.+.|++|+|+|. ++.+|+++|.||+
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~ 188 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGT 188 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSC
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCE
Confidence 34456678999999999999 467999999999999999977653 4456799999999999874 4568999999999
Q ss_pred EEEEeccCCcccccc--ccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCc
Q psy4869 185 VKIWDADTGDCFKTM--AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDL 262 (2435)
Q Consensus 185 I~iWd~~tg~~~~~~--~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (2435)
|++||++++...... ..+...+.+++|+|++.+|++|+.||.|++||++...
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-------------------------- 242 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-------------------------- 242 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB--------------------------
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce--------------------------
Confidence 999999876543222 3444567899999999999999999999999976310
Q ss_pred eeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeec
Q psy4869 263 TVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQ 342 (2435)
Q Consensus 263 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~ 342 (2435)
T Consensus 243 -------------------------------------------------------------------------------- 242 (435)
T 4e54_B 243 -------------------------------------------------------------------------------- 242 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccccceeEecccCCcEEEEEECCCCC-EEEEEeCCCeEEEEecCCcee--eEEEeeCCCCCeeEEEEccCCCE
Q psy4869 343 KDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECE--NIGVMSGHTGAVMDLKFSTDGCH 419 (2435)
Q Consensus 343 ~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~--~~~~l~~h~~~V~~l~~s~dg~~ 419 (2435)
+..+.+|.+.|++++|+|++. +|++|+.|+.|+|||++.... .+....+|...|.+++|+|||.+
T Consensus 243 ------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 310 (435)
T 4e54_B 243 ------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR 310 (435)
T ss_dssp ------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE
T ss_pred ------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe
Confidence 012457899999999999876 788999999999999875432 23344679999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeccCcccc------ccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEE
Q psy4869 420 IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVN------SCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVT 493 (2435)
Q Consensus 420 L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~------sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~ 493 (2435)
|++++.|+.|++||+.+++....+..|..... .+.|.+.+ .+.
T Consensus 311 l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~ 359 (435)
T 4e54_B 311 LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY-------------------------------NLI 359 (435)
T ss_dssp EEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS-------------------------------SCE
T ss_pred eEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC-------------------------------CEE
Confidence 99999999999999999988888877654221 11222222 233
Q ss_pred EEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEEEe-cCCCCEEEE-EEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 494 SVAFNDTAECVLTGG-IDNDIKMWDLRTNSVVQKLR-GHSDTVTGL-SLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 494 sv~~sp~g~~l~sgs-~dg~V~lwD~~s~~~v~~l~-~h~~~V~~i-~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
.+.+++++..+++++ .++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |++|+|||++.
T Consensus 360 ~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 360 VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp EEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 444556665555444 44679999999999988874 688889887 6999999999876 88999999984
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=327.14 Aligned_cols=310 Identities=20% Similarity=0.212 Sum_probs=254.1
Q ss_pred EecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc--eeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1078 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD--CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155 (2435)
Q Consensus 1078 l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~--~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~ 1155 (2435)
+..|..+|.+++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45589999999999999999999999999999999887 8888999999999999999999999999999999999987
Q ss_pred cceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce---e-eEeeccCCCEEEEEEeeCCCEEEE
Q psy4869 1156 FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC---H-KSLLAHEDSVTGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1156 ~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~---~-~~~~~h~~~V~~i~~spd~~~lvs 1231 (2435)
.+..... ....|...|.+++|++++++|++++.|+.|++||++.++. . .....|...|.+++|+|++++|++
T Consensus 84 ~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 84 RTWKPTL----VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp TEEEEEE----ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CeeeeeE----EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 6543332 2457889999999999999999999999999999998773 2 333578999999999999999999
Q ss_pred EECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccc
Q psy4869 1232 TSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311 (2435)
Q Consensus 1232 gs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1311 (2435)
++.||.|++||++......... ...|..+ ..... .. ....
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~---------------------~~~~~~~---------------~~~~~---~~-~~~~ 199 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPA---------------------PTPWGSK---------------MPFGE---LM-FESS 199 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCC---------------------CBTTBSC---------------CCTTC---EE-EECC
T ss_pred EcCCCCEEEEEccccccccccc---------------------ccccccc---------------cchhh---he-EecC
Confidence 9999999999986432100000 0000000 00000 00 0111
Q ss_pred cccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC--Cc
Q psy4869 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY--GD 1389 (2435)
Q Consensus 1312 ~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~--gk 1389 (2435)
.+...+.+++|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++| .|+.|++|++.. ++
T Consensus 200 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~ 278 (372)
T 1k8k_C 200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK 278 (372)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce
Confidence 346789999999999999999999999999999999999999999999999999999999888 999999999988 42
Q ss_pred e--------------------------------E------EEe-cccccceEEEEEee-CC---CEEEEEeCCCcEEEEE
Q psy4869 1390 C--------------------------------H------KSL-LAHEDSVTGVTFVP-KT---HYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1390 ~--------------------------------~------~~~-~~h~~~V~~laf~P-~~---~~laSgg~Dg~V~lWd 1426 (2435)
. . ..+ .+|..+|++++|++ ++ .+|+|||.||.|++||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 1 0 223 48999999999774 55 8999999999999999
Q ss_pred CCCcee
Q psy4869 1427 ADNFER 1432 (2435)
Q Consensus 1427 ~~~~~~ 1432 (2435)
+.+.+.
T Consensus 359 ~~~~~~ 364 (372)
T 1k8k_C 359 VRSLES 364 (372)
T ss_dssp HHHHHH
T ss_pred ecChhH
Confidence 986443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=328.37 Aligned_cols=292 Identities=15% Similarity=0.274 Sum_probs=248.6
Q ss_pred eEecccCCcEEEEEECCC----CCEEEEEeCCCeEEEEecCCcee--eEEEe--eCCCCCeeEEEEccC----CCEEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPD----GQYIASSGYDRQIFIWSVYGECE--NIGVM--SGHTGAVMDLKFSTD----GCHIFTC 423 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspd----g~~Lasgs~Dg~I~iwd~~~~~~--~~~~l--~~h~~~V~~l~~s~d----g~~L~s~ 423 (2435)
.+..+|.+.|++++|+|+ ...+++++.++.|++||+..... .+... ..|...|.+++|+++ +.+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 356699999999999984 45677777788999999974322 12212 237789999999998 6799999
Q ss_pred eCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee----cCcccEEEEEECC
Q psy4869 424 STDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM----NNTYQVTSVAFND 499 (2435)
Q Consensus 424 s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~----~~~~~v~sv~~sp 499 (2435)
+.||.|++||+.+++.+..+.+|...|.++.|+|.+..+|++++.|+.|++||++.++....+ .+...|.+++|+|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 999999999999999999999999999999999966678899999999999999999888876 5788999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEE----------------------------ecCCCCEEEEEEcCCCCEEEEEEC
Q psy4869 500 TAECVLTGGIDNDIKMWDLRTNSVVQKL----------------------------RGHSDTVTGLSLSPDGSYILSNAM 551 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~s~~~v~~l----------------------------~~h~~~V~~i~~spdg~~las~s~ 551 (2435)
++++|++|+.||.|++||+++++.+..+ .+|...|.+++|+ +++|++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 9999999999999999999987654333 3499999999998 789999999
Q ss_pred CCcEEEEEcCCCCC----------CCceEEEEeCcccccccCeEEEEEcCC--CCEEEEecCCCeEEEEECCCCc----E
Q psy4869 552 DNTVRIWDIRPYVP----------GERCVKVMSGHQHNFEKNLLRCAWSVS--GLYVTAGSADKCVYIWDTTTRR----I 615 (2435)
Q Consensus 552 Dg~I~lWdl~~~~~----------~~~~v~~~~~h~~~~~~~i~~v~~spd--g~~Lasgs~Dg~V~iwd~~s~~----~ 615 (2435)
|+.|++||++.... ....+..+.+|. ..+..++|+|+ |++|++|+.||.|++||+.+++ .
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ----CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS----CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccC----CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence 99999999985422 113456666664 35778999999 9999999999999999999875 4
Q ss_pred EEEecCC--CCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 616 AYKLPGH--NGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 616 ~~~l~~h--~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
...+.+| ...|++++|+|++++|++++.||.|++||+.
T Consensus 326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 4577787 7999999999999999999999999999974
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=322.86 Aligned_cols=291 Identities=17% Similarity=0.245 Sum_probs=244.2
Q ss_pred EEecCCcCEEEEEEcCCCCEEE-EEEC---CCcEEEEEccCCceeEEE-eccCCCEEEEEEccC---CCEEEEEeCCCcE
Q psy4869 1077 SLYGHKLPVLSLDMSYDSTLIA-TGSG---DRTVKVWGLDYGDCHKSL-LAHEDSVTGVTFVPK---THYFFTTSKDGRV 1148 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~~L~-Sgs~---Dg~I~vWd~~t~~~~~~l-~~h~~~V~~v~fsp~---~~~l~s~s~Dg~V 1148 (2435)
.+.+|...|.+++|+|++..++ +|+. ||.|++||+.+++..... ..|...|.+++|+|+ +.+|++++.|+.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 4567999999999999996554 5555 999999999998876554 379999999999998 6999999999999
Q ss_pred EEEeCCCcc-eeEEEEEEEeecccccCeEEEEE------eCCCCEEEEEeCCCcEEEEEccCCc-eeeEeeccCC----C
Q psy4869 1149 KQWDADNFE-RIVTLHFFISLYGHKLPVLSLDM------SYDSTLIATGSGDRTVKVWGLDYGD-CHKSLLAHED----S 1216 (2435)
Q Consensus 1149 ~iwD~~~~~-~~~~~~~~~~~~~h~~~V~~l~~------s~dg~~l~sgs~Dg~V~iwd~~t~~-~~~~~~~h~~----~ 1216 (2435)
++||+.+.. ....+ ..|...|.+++| ++++++|++++.||.|++||+++++ .+..+..|.+ .
T Consensus 93 ~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSV------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp EEECTTSCSSCSEEE------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred EEEeCCCCCccEEEE------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 999999876 44443 489999999965 6789999999999999999999887 6777766655 8
Q ss_pred EEEEE----EeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccccccc
Q psy4869 1217 VTGVT----FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEE 1292 (2435)
Q Consensus 1217 V~~i~----~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~ 1292 (2435)
|.++. |+|++++|++++.||.|++||++..+....
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------------------------------- 205 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE----------------------------------------- 205 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-----------------------------------------
T ss_pred eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-----------------------------------------
Confidence 99998 678999999999999999999987543211
Q ss_pred ccccccccceeeeeecccccccccEEEEEecC---CcceeEEeecCCeEEEEEcccceEEEEe-----cCCCCCeEEEEE
Q psy4869 1293 TKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP---DSKLLAVSLLDTTVKIFFLDTFKFFISL-----YGHKLPVLSLDM 1364 (2435)
Q Consensus 1293 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~sp---dg~~lavgs~dG~V~v~d~~~~k~i~~~-----~~h~~~V~~la~ 1364 (2435)
..+...+.+++|+| ++.+|++|+.||.|++||+.+++.+..+ .+|...|.+++|
T Consensus 206 ------------------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (357)
T 3i2n_A 206 ------------------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267 (357)
T ss_dssp ------------------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred ------------------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence 01245689999999 9999999999999999999886654444 389999999999
Q ss_pred ecCCC-EEEEEeCCCcEEEEeCCCC-------------------ceEEEecccccceEEEEEeeCCCEEE-EEeCCCcEE
Q psy4869 1365 SYDST-LIATGSGDRTVKVWGLDYG-------------------DCHKSLLAHEDSVTGVTFVPKTHYFF-TTSKDGRVK 1423 (2435)
Q Consensus 1365 spdg~-~L~sGg~Dg~V~iwdl~~g-------------------k~~~~~~~h~~~V~~laf~P~~~~la-Sgg~Dg~V~ 1423 (2435)
+|+++ +|++|+.||.|++||++.+ +++..+.+|..+|++++|+|++.+|+ +++.||.|+
T Consensus 268 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence 99999 8999999999999999864 46677889999999999999999888 899999999
Q ss_pred EEECCCcee
Q psy4869 1424 QWDADNFER 1432 (2435)
Q Consensus 1424 lWd~~~~~~ 1432 (2435)
+||+...++
T Consensus 348 iw~~~~~~~ 356 (357)
T 3i2n_A 348 VLIVTKLNK 356 (357)
T ss_dssp EEEECC---
T ss_pred EEECCCccc
Confidence 999987654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=323.88 Aligned_cols=308 Identities=17% Similarity=0.268 Sum_probs=251.6
Q ss_pred eeeeeCCCCceEEEEEeCC----CCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCC----C
Q psy4869 16 FNIIASPNCNVVFVTLKNQ----EGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHD----S 87 (2435)
Q Consensus 16 ~~~~~~~~~~v~~~~~~~~----~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d----~ 87 (2435)
.-+..+|.+.|.++++.+. ++.+++++.+|.|+|||+.+.+..... .......+...|.+++|+++ +
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL-----QSYVDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEE-----EEEECSCTTCCEEEEEEEECTTTCC
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEee-----eeccccCCCCcEEEEEeccCCCCCC
Confidence 3566689999999988652 334666678889999999876543311 11222335667899999999 6
Q ss_pred CeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccCCeeEEEE---ecCCCcEE
Q psy4869 88 SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECGLHRL---SGHKGVIT 163 (2435)
Q Consensus 88 ~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~~~~~~~l---~gH~~~V~ 163 (2435)
.+|++|+.||.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||+.+++.+..+ .+|...|.
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 165 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 165 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEE
T ss_pred CEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCcee
Confidence 6899999999999999999999999999999999999999 8999999999999999999999988888 78999999
Q ss_pred EEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccccc----------------------------ccceEEEEEEEeCC
Q psy4869 164 DIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA----------------------------HLTEVWGVCVMRED 215 (2435)
Q Consensus 164 ~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~----------------------------h~~~V~~l~~~p~~ 215 (2435)
+++|+| ++.+|++++.||.|++||+++++.+..+.. |...|.+++|+ +
T Consensus 166 ~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 241 (366)
T 3k26_A 166 SADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G 241 (366)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred EEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence 999985 466899999999999999999887766554 99999999998 7
Q ss_pred CeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeee
Q psy4869 216 SYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCI 295 (2435)
Q Consensus 216 ~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 295 (2435)
++|++++.|+.|++||++........ ....
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~------------------------------------~~~~-------------- 271 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDK------------------------------------IKPS-------------- 271 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGG------------------------------------CCTT--------------
T ss_pred CEEEEEecCCEEEEEeCCCccccccc------------------------------------cccC--------------
Confidence 89999999999999999864321000 0000
Q ss_pred cccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCC--
Q psy4869 296 SSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPD-- 373 (2435)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspd-- 373 (2435)
. ........+.+|...|++++|+|+
T Consensus 272 ----------------------------~-------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (366)
T 3k26_A 272 ----------------------------E-------------------------SNVTILGRFDYSQCDIWYMRFSMDFW 298 (366)
T ss_dssp ----------------------------C-------------------------CCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred ----------------------------C-------------------------cchheeccccccCCcEEEEEEcCCCC
Confidence 0 000122356788999999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCce---eeEEEeeCC--CCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 374 GQYIASSGYDRQIFIWSVYGEC---ENIGVMSGH--TGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 374 g~~Lasgs~Dg~I~iwd~~~~~---~~~~~l~~h--~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
|++|++|+.||.|++||+.... .....+.+| ...|.+++|+|++++|++++.||.|++||+.
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999997642 234466777 7999999999999999999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=312.10 Aligned_cols=282 Identities=20% Similarity=0.264 Sum_probs=249.3
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
.+...+.+|.+.|++++| |++.+|++|+.||.|++||+... .....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 345678999999999999 99999999999999999999664 3456678899999999999999999999999999999
Q ss_pred ECCCC---ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECC-CCCEEEEE
Q psy4869 433 DLEKG---QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFND-TAECVLTG 507 (2435)
Q Consensus 433 d~~tg---~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp-~g~~l~sg 507 (2435)
++... +.+..+.+|...+.++.|. +.++++++.|+.|++|| .+.....+ .+...+.+++|.| ++++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 98754 6678889999999999882 35788999999999999 44444444 5788999999988 99999999
Q ss_pred ecCCeEEEEECCCCcEEEEEec-CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEE
Q psy4869 508 GIDNDIKMWDLRTNSVVQKLRG-HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586 (2435)
Q Consensus 508 s~dg~V~lwD~~s~~~v~~l~~-h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~ 586 (2435)
+.||.|++|| .++.+..+.. |...|.+++|+|++. +++++.|+.|++||++. .+++..+.+|. ..+.+
T Consensus 162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~----~~~~~~~~~~~----~~i~~ 230 (313)
T 3odt_A 162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT----GDVLRTYEGHE----SFVYC 230 (313)
T ss_dssp ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT----CCEEEEEECCS----SCEEE
T ss_pred ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc----hhhhhhhhcCC----ceEEE
Confidence 9999999999 5667777777 999999999999998 99999999999999984 56778887775 47899
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCC
Q psy4869 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 587 v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~ 654 (2435)
++|+|+| .|++++.||.|++||+++++++..+..|...|.+++|+|+++ +++++.||.|++|++..
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred EEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 9999999 588999999999999999999999999999999999999998 66799999999999974
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=339.69 Aligned_cols=323 Identities=12% Similarity=0.146 Sum_probs=235.4
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC--eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEe
Q psy4869 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE--CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189 (2435)
Q Consensus 112 ~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~--~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd 189 (2435)
.+..|.+.|++++|+|+|++||+|+.|+.|+|||+.+. +.+..+.+|.+.|.+++|+|+ +.+|++++.|++|++||
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK--SNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT--TCCEEEEETTSSEEEC-
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC--CCEEEEEeCCCeEEEEE
Confidence 44557889999999999999999999999999999988 677888999999999999854 56899999999999999
Q ss_pred ccCCc---cccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeee
Q psy4869 190 ADTGD---CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSK 266 (2435)
Q Consensus 190 ~~tg~---~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 266 (2435)
+++++ ....+.+|...|.+++|+|++++|++++.|+.|++||++.++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------------------------- 135 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW---------------------------- 135 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C----------------------------
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc----------------------------
Confidence 99988 66777899999999999999999999999999999998743100
Q ss_pred EEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeeccccc
Q psy4869 267 IEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVG 346 (2435)
Q Consensus 267 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 346 (2435)
T Consensus 136 -------------------------------------------------------------------------------- 135 (377)
T 3dwl_C 136 -------------------------------------------------------------------------------- 135 (377)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccceeEecc-cCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC-----------------ceeeEEEeeCCCCCe
Q psy4869 347 RTSNLFAPIMLLEG-HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG-----------------ECENIGVMSGHTGAV 408 (2435)
Q Consensus 347 ~~~~~~~p~~~l~g-H~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-----------------~~~~~~~l~~h~~~V 408 (2435)
.....+.+ |...|++++|+|++++|++|+.||.|++||+.. .......+ +|.+.|
T Consensus 136 ------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 208 (377)
T 3dwl_C 136 ------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV 208 (377)
T ss_dssp ------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE
T ss_pred ------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE
Confidence 00012334 899999999999999999999999999999852 12334445 899999
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEECCCCce----EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc--c
Q psy4869 409 MDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR----IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN--Q 482 (2435)
Q Consensus 409 ~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~----v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~--~ 482 (2435)
.+++|+|++++|++++.|+.|++||+.+++. +..+.+|...|.++.|+|++ .+|++++.|+.+ +|+..... .
T Consensus 209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~ 286 (377)
T 3dwl_C 209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAH 286 (377)
T ss_dssp EEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEE
Confidence 9999999999999999999999999999987 78889999999999999987 567788777666 66654322 1
Q ss_pred eEeecCc----------------ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCC-C-
Q psy4869 483 AVSMNNT----------------YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDG-S- 544 (2435)
Q Consensus 483 ~~~~~~~----------------~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg-~- 544 (2435)
...+... .....+.|+.....+......|... ........|.+.|++|.+.++. .
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~H~~~i~~~~~~~~~~~~ 359 (377)
T 3dwl_C 287 TRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPTVHQNMIATLRPYAGTPGN 359 (377)
T ss_dssp SBCCCSCCCCCCBSSSSSBCCCCCC--------------------------------CCCSSSCSSCEEEEEEEEEETTE
T ss_pred Eeeecccccccccccccccccccccccccccccccccccchhhccccc-------cccccCccccceeEEEeccCCCCCc
Confidence 1111110 1133333333322222211111110 1111234699999999976643 3
Q ss_pred --EEEEEECCCcEEEEEc
Q psy4869 545 --YILSNAMDNTVRIWDI 560 (2435)
Q Consensus 545 --~las~s~Dg~I~lWdl 560 (2435)
.|++++.||.|+|||+
T Consensus 360 ~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 360 ITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEEETTSEEEEECC
T ss_pred eEEEEeecCCCcEEEecC
Confidence 6999999999999995
|
| >3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-33 Score=336.79 Aligned_cols=208 Identities=15% Similarity=0.116 Sum_probs=137.0
Q ss_pred ccccCCCCCCCCCcccccccccccCccCCCCCC--CCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccc
Q psy4869 2138 KLSANEDPEEFPNEDVFEHTFAEIPNIDHSNQT--DEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLK 2215 (2435)
Q Consensus 2138 ~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~~--~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~ 2215 (2435)
+++.++..|.|+..+.................. ..+||++||||+ ++ ||||||.|||||
T Consensus 19 ~~~~~~~~~~~~~~lG~~p~~~d~rd~~~~~~~~~~~~lP~s~DwR~-----~~---pVkdQG~CGSCW----------- 79 (291)
T 3ois_A 19 SHMQTVLKRRKKSGYGYIPDIADIRDFSYTPEKSVIAALPPKVDLTP-----PF---QVYDQGRIGSCT----------- 79 (291)
T ss_dssp ----CCCCCCCCTTCCEECCCCCTTCCBCCCCHHHHHTCCSEEECCC-----SS---CCCBCTTSSCHH-----------
T ss_pred hhHhHhhhccccccCCCCCCCCcccccccCCCccccccCCcceeccc-----CC---CcccCCCCccHH-----------
Confidence 455677778887665544333222221111111 247999999999 53 999999999999
Q ss_pred cceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCcccee-cccCCCCCCCCCCCCCCCCCCChhhHHH
Q psy4869 2216 GLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLI-CSCTNCTRMHTKTPMSMCMGGDSAAAWM 2294 (2435)
Q Consensus 2216 ~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~-~~~~~c~~~~~~~~~~gC~gg~~~~a~~ 2294 (2435)
|||++++||+++++ ++.... ||+|+|+ |+| ...- .....+|+||++..||+
T Consensus 80 ---------------------AFAa~~alE~~~~~-~g~~~~--lS~q~l~~~~c---~~~~-~~~~~~c~GG~~~~A~~ 131 (291)
T 3ois_A 80 ---------------------ANALAAAIQFERIH-DKQSPE--FIPSRLFIYYN---ERKI-EGHVNYDSGAMIRDGIK 131 (291)
T ss_dssp ---------------------HHHHHHHHHHHHHH-TTCSSC--CCBCHHHHHHH---HHHH-SSCTTSCCCEEHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHH-hCCCCC--cCcCHHHHHhh---hhhh-hcCCCCCCCcCHHHHHH
Confidence 99999999999865 455444 9999997 333 2100 00113589999999999
Q ss_pred HHHHcCccCCCcccCCCCCc----ccc--------------------------------ccCcccceeecccCCcccccc
Q psy4869 2295 YWINAGLVDGGDYGTHDVSM----GRY--------------------------------IEGIGHAASVMGSSNPEVNNF 2338 (2435)
Q Consensus 2295 ~~~~~Gi~~~~~y~~~~~~~----~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 2338 (2435)
|++++||++|++|||..... ..+ +..++.++...+|+.+.++.+
T Consensus 132 yi~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~p~~~C~~~~~~~~i~~y~~v~~~e~~i~~al~~~gPV~v~~~~~ 211 (291)
T 3ois_A 132 VLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVY 211 (291)
T ss_dssp HHHHTCCCBGGGSCCCCCCCCTTTCSCCTTCGGGSCCCHHHHHHHGGGCCCEEEECCSCHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHhCCCCHhhCCCCCCccccccccccccccccCCCCHHHHhhcccceeccEEEcCcCHHHHHHHHHcCCCEEEEEEec
Confidence 99999999999999976520 000 011122233445665555444
Q ss_pred eeeEEEEec--CCC-----c-CcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC
Q psy4869 2339 EKVIRLYSC--EGS-----I-NPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV 2396 (2435)
Q Consensus 2339 ~~~~~~~~~--~~~-----~-~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~ 2396 (2435)
.. |+.|.. +.+ . ...++|||+||||| ++++|||||||||+.|||+|||||.|+.
T Consensus 212 ~~-f~~y~~~~Gi~~~~~~~~~~~~~Hav~iVGy~---~~~~ywivkNSWG~~WG~~Gy~~i~~~~ 273 (291)
T 3ois_A 212 NS-WVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYD---DEIRHFRIRNSWGNNVGEDGYFWMPYEY 273 (291)
T ss_dssp HH-HHGGGCCCSBCCCCCTTSCEEEEEEEEEEEEE---TTTTEEEEECSBCTTSTBTTEEEEEHHH
T ss_pred cc-hhhcCCCCeEEeCCCCCCCCcCCeEEEEEEEe---CCCCEEEEEeCCCCCCCCCcEEEEEHHH
Confidence 21 222221 111 1 12358999999998 4678999999999999999999999984
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-30 Score=334.41 Aligned_cols=314 Identities=13% Similarity=0.201 Sum_probs=258.6
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEE-ecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEEccC---Cc---eeE
Q psy4869 1047 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL-YGHKLPVLSLDMSY-DSTLIATGSGDRTVKVWGLDY---GD---CHK 1118 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l-~~h~~~V~sl~~sp-dg~~L~Sgs~Dg~I~vWd~~t---~~---~~~ 1118 (2435)
.|+|++..++.+. .|+ .+++.+..+ .+|...|.+++|+| ++++|++|+.||.|++||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4678888777664 366 456788888 88999999999999 999999999999999999976 43 233
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CcceeEEEE--EEEee--cc--cccCeEEEE--EeCCCCEE
Q psy4869 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD---NFERIVTLH--FFISL--YG--HKLPVLSLD--MSYDSTLI 1187 (2435)
Q Consensus 1119 ~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~---~~~~~~~~~--~~~~~--~~--h~~~V~~l~--~s~dg~~l 1187 (2435)
.+ .|...|.+++|+|++++|++++.|+.|++||+. .++...... ....+ .. +...+.++. +++++.+|
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 33 599999999999999999999999999999995 443333221 11111 12 566788877 55889999
Q ss_pred EEEeCCCcEEEEEccCCceeeEeec--cCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceE
Q psy4869 1188 ATGSGDRTVKVWGLDYGDCHKSLLA--HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQ 1265 (2435)
Q Consensus 1188 ~sgs~Dg~V~iwd~~t~~~~~~~~~--h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~ 1265 (2435)
++|+.|+.|++||+++++.+..+.. |...|.+++|+|++++|++++.||.|++||++..+.+..+..
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------- 254 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF----------- 254 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-----------
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-----------
Confidence 9999999999999999999999987 899999999999999999999999999999987665443321
Q ss_pred EEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEE----EecCCcceeEEeecCCeEEEE
Q psy4869 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA----RVSPDSKLLAVSLLDTTVKIF 1341 (2435)
Q Consensus 1266 lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i----a~spdg~~lavgs~dG~V~v~ 1341 (2435)
.....|.++ .|+|++.+|++|+.||.|++|
T Consensus 255 ----------------------------------------------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 255 ----------------------------------------------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp ----------------------------------------------TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred ----------------------------------------------CCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 112356777 555679999999999999999
Q ss_pred EcccceEEEEecC--------------------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEec
Q psy4869 1342 FLDTFKFFISLYG--------------------------HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1395 (2435)
Q Consensus 1342 d~~~~k~i~~~~~--------------------------h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~ 1395 (2435)
|+.+++.+..+.+ |...|.+++|+ ++++|++|+.|+.|++||+.++++...+.
T Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 289 NFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp ETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred EcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 9999888777764 44568889999 78999999999999999999998777665
Q ss_pred c-------------------------------------cccceEEEEEeeC--CCEEEEEeCCCcEEEEE
Q psy4869 1396 A-------------------------------------HEDSVTGVTFVPK--THYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1396 ~-------------------------------------h~~~V~~laf~P~--~~~laSgg~Dg~V~lWd 1426 (2435)
+ |...|++|+|+++ +.+|+||+.||.|+||+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5 8899999999998 78999999999999995
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=337.38 Aligned_cols=292 Identities=17% Similarity=0.265 Sum_probs=234.8
Q ss_pred eEecccCCcEEEEEECC-CCCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vw 432 (2435)
....+|...|+||+|+| ++++||+|+.||.|+|||+.... .....+.+|.+.|.+|+|+| ++.+|++++.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 45678999999999999 56799999999999999987543 34455678999999999998 78999999999999999
Q ss_pred ECCCCceEEEEecc--CccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCC-EEEEEec
Q psy4869 433 DLEKGQRIKKMKGH--STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAE-CVLTGGI 509 (2435)
Q Consensus 433 d~~tg~~v~~l~~h--~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~-~l~sgs~ 509 (2435)
|++++........| ...+.+++|++++ .+|++|+.|+.|++||++.........|...|.+++|+|+++ +|++|+.
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 99766543333333 3456778888877 578899999999999997654433346788999999999886 7889999
Q ss_pred CCeEEEEECCCCcEEEE---EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccc--cCe
Q psy4869 510 DNDIKMWDLRTNSVVQK---LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE--KNL 584 (2435)
Q Consensus 510 dg~V~lwD~~s~~~v~~---l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~--~~i 584 (2435)
||.|++||+++.+.... ..+|...|++++|+|||++|++++.|++|+|||++. ..+...+..|..... ..+
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ----WDCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS----SSSEEEECCCCCCCCSSSCC
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC----CccceEEeccccccccccee
Confidence 99999999998765433 367999999999999999999999999999999984 445555555543211 123
Q ss_pred EEEEEcCCCCEEEEec------------CCCeEEEEECCCCcEEEEec-CCCCCeeEE-EEcCCCCEEEEEECCCcEEEe
Q psy4869 585 LRCAWSVSGLYVTAGS------------ADKCVYIWDTTTRRIAYKLP-GHNGSVNDV-QFHPKEPIIMSASSDKTIYLG 650 (2435)
Q Consensus 585 ~~v~~spdg~~Lasgs------------~Dg~V~iwd~~s~~~~~~l~-~h~~~V~~l-~fspd~~~Lasgs~Dg~I~vW 650 (2435)
..+.|+|++.++++++ .++.|++||..+++++..+. +|...|.++ +|+|++++|++|+ |+.|++|
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 4567777777766654 24579999999999988875 688889987 6999999999876 8899999
Q ss_pred cCC
Q psy4869 651 ESP 653 (2435)
Q Consensus 651 d~~ 653 (2435)
++.
T Consensus 427 ~~~ 429 (435)
T 4e54_B 427 SQQ 429 (435)
T ss_dssp CCC
T ss_pred ECC
Confidence 986
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=329.71 Aligned_cols=288 Identities=12% Similarity=0.172 Sum_probs=230.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCC-------CeEEEEecCCcee---------eEEEeeCCCCCeeEEEEccCCCEEEEEe-
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYD-------RQIFIWSVYGECE---------NIGVMSGHTGAVMDLKFSTDGCHIFTCS- 424 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~D-------g~I~iwd~~~~~~---------~~~~l~~h~~~V~~l~~s~dg~~L~s~s- 424 (2435)
.-+|++++|+|||++|++|+.| +.|++|++..... ....+.+|...|.+++++ +..++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4589999999999999999754 3699999864321 123467888999988875 45666653
Q ss_pred ----------CCCeEEEEECCCCceEEE----Ee-----ccCccccccCcccCCCeEE-EEEeCCCeEEEEeCCCCcceE
Q psy4869 425 ----------TDQTLAVWDLEKGQRIKK----MK-----GHSTFVNSCDPVRRGQLLI-ASGSDDCTVKVWDPRKKNQAV 484 (2435)
Q Consensus 425 ----------~Dg~I~vwd~~tg~~v~~----l~-----~h~~~v~sv~~~~~~~~ll-asgs~Dg~I~vwD~~~~~~~~ 484 (2435)
.|+.+++|++.++..... .. .+...+..++|+|++..++ ++++.|++|++||+++++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 467899999876542221 11 2344577899999997764 567789999999999999999
Q ss_pred eecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEECCC----cEEEE
Q psy4869 485 SMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAMDN----TVRIW 558 (2435)
Q Consensus 485 ~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~Dg----~I~lW 558 (2435)
.+.+...|.+++|+|+|+++++++. +.+.+|+..+++.+.. ..+|...|.+++|+||++++++++.|+ .+++|
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred EeCCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 9989999999999999999999884 5577777777766543 357888999999999999999999887 68889
Q ss_pred EcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEe-cCCCCCeeEEEEcCCCCE
Q psy4869 559 DIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKL-PGHNGSVNDVQFHPKEPI 637 (2435)
Q Consensus 559 dl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l-~~h~~~V~~l~fspd~~~ 637 (2435)
|+............+.+|. ..|.+++|+|||++||+|+.|+.|+|||+++++++..+ .+|...|++|+|+||+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~----~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRF----KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp EEETTEEEEEEEEEEESSC----SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred ccccceecceeeeeecCCC----CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence 9874321112233444553 47899999999999999999999999999999999875 789999999999999999
Q ss_pred EEEEECCCcEEEecCCCcc
Q psy4869 638 IMSASSDKTIYLGESPLHC 656 (2435)
Q Consensus 638 Lasgs~Dg~I~vWd~~~~~ 656 (2435)
||+||.|++|+||+++...
T Consensus 327 laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEEETTSEEEEEECCTTT
T ss_pred EEEEeCCCeEEEEEcCCCC
Confidence 9999999999999998443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-31 Score=337.52 Aligned_cols=289 Identities=14% Similarity=0.133 Sum_probs=231.9
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
+++.|.++|++++|+|+|++|++|+.||.|++||+.... .....+.+|.+.|.+++|+|++++|++++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 455678899999999999999999999999999998653 5566788999999999999999999999999999999999
Q ss_pred CCc---eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc---eEee-c-CcccEEEEEECCCCCEEEEE
Q psy4869 436 KGQ---RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ---AVSM-N-NTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 436 tg~---~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~---~~~~-~-~~~~v~sv~~sp~g~~l~sg 507 (2435)
+++ ....+.+|...|.+++|+|++ .+|++++.|+.|++||++.++. ...+ . |...|.+++|+|++++|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 887 677888999999999999976 5678899999999999998763 4444 3 78899999999999999999
Q ss_pred ecCCeEEEEECC------------------CCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCce
Q psy4869 508 GIDNDIKMWDLR------------------TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERC 569 (2435)
Q Consensus 508 s~dg~V~lwD~~------------------s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~ 569 (2435)
+.||.|++||++ .++++..+ +|.+.|.+++|+|+|++|++++.|++|++||++........
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566667 89999999999999999999999999999999864322222
Q ss_pred EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC-CC-----------------------------------
Q psy4869 570 VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT-TR----------------------------------- 613 (2435)
Q Consensus 570 v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~-s~----------------------------------- 613 (2435)
+..+.+|. ..+.+++|+|+|++|++|+.|+.+ +|+.. .+
T Consensus 244 ~~~~~~~~----~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 244 LITVKLSQ----LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp CCCEECSS----SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred eEeecCCC----CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 55666664 478999999999999999877766 66543 21
Q ss_pred ---cEEE-------------EecCCCCCeeEEEEcCCCC----EEEEEECCCcEEEecC
Q psy4869 614 ---RIAY-------------KLPGHNGSVNDVQFHPKEP----IIMSASSDKTIYLGES 652 (2435)
Q Consensus 614 ---~~~~-------------~l~~h~~~V~~l~fspd~~----~Lasgs~Dg~I~vWd~ 652 (2435)
.... ....|.+.|+++++.+... .|++||.||.|++||+
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 0113999999999876543 6999999999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=325.62 Aligned_cols=336 Identities=19% Similarity=0.236 Sum_probs=243.4
Q ss_pred ceeEecccCCcEEEEEECC-CCCEEEEEeCCCeEEEEecCCceeeEEEe------------eCCCCCeeEEEEcc-CCCE
Q psy4869 354 PIMLLEGHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGECENIGVM------------SGHTGAVMDLKFST-DGCH 419 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l------------~~h~~~V~~l~~s~-dg~~ 419 (2435)
...++.+|.+.|++++|+| ++++|++|+.||.|++||+.......... .+|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3457789999999999999 99999999999999999987542211111 35999999999999 7789
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCC--eEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEE
Q psy4869 420 IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ--LLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVA 496 (2435)
Q Consensus 420 L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~--~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~ 496 (2435)
|++++.|+.|++||+.+++.+..+. +...+.++.+.+.+. .++++++.|+.|++||+++++.+..+. +...|.+++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 9999999999999999998888776 666778888877643 488999999999999999988887774 788999999
Q ss_pred ECCCCC-EEEEEecCCeEEEEECCCCc-EEEEE---------------ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy4869 497 FNDTAE-CVLTGGIDNDIKMWDLRTNS-VVQKL---------------RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559 (2435)
Q Consensus 497 ~sp~g~-~l~sgs~dg~V~lwD~~s~~-~v~~l---------------~~h~~~V~~i~~spdg~~las~s~Dg~I~lWd 559 (2435)
|+|+++ +|++|+.||.|++||++++. .+..+ .+|...|.+++|+|++++|++++.|+.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 999999 58999999999999998875 44444 57889999999999999999999999999999
Q ss_pred cCCCCCCCceEEEEeCcccccc-cCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEE
Q psy4869 560 IRPYVPGERCVKVMSGHQHNFE-KNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPII 638 (2435)
Q Consensus 560 l~~~~~~~~~v~~~~~h~~~~~-~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~L 638 (2435)
++... ....+.++..... ..+........+..++.++.|+.|++||+.+++++..+.+|.+.|++++|+|++++|
T Consensus 274 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 349 (408)
T 4a11_B 274 SSNGE----NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL 349 (408)
T ss_dssp TTTCC----BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEE
T ss_pred CCCCc----cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEE
Confidence 98532 2222222111111 111122223345667777889999999999999999999999999999999999999
Q ss_pred EEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeecc
Q psy4869 639 MSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCT 698 (2435)
Q Consensus 639 asgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 698 (2435)
++|+.||.|++|++.......... ...................+.++.+.+|....
T Consensus 350 ~s~~~dg~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 350 YSGSRDCNILAWVPSLYEPVPDDD----ETTTKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEEETTSCEEEEEECC--------------------------------------------
T ss_pred EEECCCCeEEEEeCCCCCccCCCC----ceEeccccccccceeecccCccCceeecCCcc
Confidence 999999999999997433221110 00011111222334455666777888886543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=313.00 Aligned_cols=252 Identities=20% Similarity=0.322 Sum_probs=213.0
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC--eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEE
Q psy4869 111 STFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE--CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIW 188 (2435)
Q Consensus 111 ~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~--~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iW 188 (2435)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+... +.+.++.+|.++|.+++|+++.++.+|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 467899999999999999999999999999999999753 567899999999999999865446789999999999999
Q ss_pred eccCCc--cccccccccceEEEEEEEeC--CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCcee
Q psy4869 189 DADTGD--CFKTMAAHLTEVWGVCVMRE--DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTV 264 (2435)
Q Consensus 189 d~~tg~--~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 264 (2435)
|+++++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||++.....
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-------------------------- 136 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-------------------------- 136 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB--------------------------
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce--------------------------
Confidence 999885 56677889999999999997 889999999999999998742100
Q ss_pred eeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeeccc
Q psy4869 265 SKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKD 344 (2435)
Q Consensus 265 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~ 344 (2435)
T Consensus 137 -------------------------------------------------------------------------------- 136 (297)
T 2pm7_B 137 -------------------------------------------------------------------------------- 136 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccccceeEecccCCcEEEEEECCC-------------CCEEEEEeCCCeEEEEecCCce---eeEEEeeCCCCCe
Q psy4869 345 VGRTSNLFAPIMLLEGHGGEIFCSKYHPD-------------GQYIASSGYDRQIFIWSVYGEC---ENIGVMSGHTGAV 408 (2435)
Q Consensus 345 ~~~~~~~~~p~~~l~gH~~~V~~l~fspd-------------g~~Lasgs~Dg~I~iwd~~~~~---~~~~~l~~h~~~V 408 (2435)
....+.+|...|.+++|+|+ +++|++|+.|+.|++||++... .....+.+|...|
T Consensus 137 ---------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V 207 (297)
T 2pm7_B 137 ---------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (297)
T ss_dssp ---------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred ---------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence 00124578888888999886 5799999999999999987543 2445788999999
Q ss_pred eEEEEccCC---CEEEEEeCCCeEEEEECCCCc--e-EEEE--eccCccccccCcccCCCeEEEEEeCCCeEEEEeCC
Q psy4869 409 MDLKFSTDG---CHIFTCSTDQTLAVWDLEKGQ--R-IKKM--KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR 478 (2435)
Q Consensus 409 ~~l~~s~dg---~~L~s~s~Dg~I~vwd~~tg~--~-v~~l--~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~ 478 (2435)
.+++|+|++ .+|++++.|+.|++||++++. . ...+ ..|...+.+++|+|++ .+|++++.|+.|++|+..
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEEC
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEEC
Confidence 999999984 799999999999999997743 2 2233 4678889999999987 467889999999999976
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-29 Score=324.41 Aligned_cols=287 Identities=20% Similarity=0.358 Sum_probs=253.2
Q ss_pred EEEecCCCc--EEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccccc-ccceEEEEEEEeCCCeEEEeeCCCcEEE
Q psy4869 153 HRLSGHKGV--ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA-HLTEVWGVCVMREDSYLISGSNDAELKV 229 (2435)
Q Consensus 153 ~~l~gH~~~--V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~-h~~~V~~l~~~p~~~~l~s~s~Dg~v~v 229 (2435)
....+|... +.++.|+ ++ .+++++.|+.|++||+.+|+....+.. |...|.+++|+|++++|++|+.||.|++
T Consensus 85 ~~~~~~~~~~~~~~~~~s--~~--~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWS--NL--NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160 (401)
T ss_dssp EECTTCCCCTTCBCEEEC--TT--SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeCCCCcCCceEEEEeec--CC--CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence 334577665 5557775 22 378899999999999999998877755 8899999999999999999999999999
Q ss_pred EEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCcccccc
Q psy4869 230 WNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGI 309 (2435)
Q Consensus 230 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2435)
||+.+++.
T Consensus 161 wd~~~~~~------------------------------------------------------------------------ 168 (401)
T 4aez_A 161 YDVESQTK------------------------------------------------------------------------ 168 (401)
T ss_dssp EETTTCCE------------------------------------------------------------------------
T ss_pred EECcCCeE------------------------------------------------------------------------
Confidence 99874310
Q ss_pred chhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy4869 310 DTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIW 389 (2435)
Q Consensus 310 ~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iw 389 (2435)
...+.+|...|.+++| ++++|++|+.||.|++|
T Consensus 169 ---------------------------------------------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~ 201 (401)
T 4aez_A 169 ---------------------------------------------LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHH 201 (401)
T ss_dssp ---------------------------------------------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred ---------------------------------------------EEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEE
Confidence 0124578899999999 56899999999999999
Q ss_pred ecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEe--
Q psy4869 390 SVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGS-- 467 (2435)
Q Consensus 390 d~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs-- 467 (2435)
|++........+.+|.+.|.+++|+|++.+|++++.|+.|++||+++++.+..+.+|...|.+++|+|++..++++++
T Consensus 202 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs 281 (401)
T 4aez_A 202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT 281 (401)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT
T ss_pred ecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCC
Confidence 998666667788999999999999999999999999999999999999999999999999999999999989999876
Q ss_pred CCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEE--ecCCeEEEEECCCCcEEE--EEecCCCCEEEEEEcCCC
Q psy4869 468 DDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTG--GIDNDIKMWDLRTNSVVQ--KLRGHSDTVTGLSLSPDG 543 (2435)
Q Consensus 468 ~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sg--s~dg~V~lwD~~s~~~v~--~l~~h~~~V~~i~~spdg 543 (2435)
.|+.|++||+++++....+.+...+.+++|+|++++++++ +.||.|++||+++++... .+.+|.+.|.+++|+|+|
T Consensus 282 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (401)
T 4aez_A 282 MDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG 361 (401)
T ss_dssp TTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS
T ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC
Confidence 8999999999999999999888999999999999999994 489999999999976554 467999999999999999
Q ss_pred CEEEEEECCCcEEEEEcCC
Q psy4869 544 SYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 544 ~~las~s~Dg~I~lWdl~~ 562 (2435)
++|++++.||.|++||+..
T Consensus 362 ~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 362 RILSTAASDENLKFWRVYD 380 (401)
T ss_dssp SEEEEECTTSEEEEEECCC
T ss_pred CEEEEEeCCCcEEEEECCC
Confidence 9999999999999999985
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=339.22 Aligned_cols=315 Identities=9% Similarity=0.055 Sum_probs=252.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCc
Q psy4869 115 GHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD 194 (2435)
Q Consensus 115 gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~ 194 (2435)
.-...|.+|+|+|||+++||||.|++|+ |....+ .+.+|.+.|++|+|+|+. .|+.+.+|+.+..
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~~- 77 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE---------FENKLDFELAQQN- 77 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCSS-
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC---------CcceEEEEeCCCc-
Confidence 3468899999999999999999999999 754444 337999999999999743 4565555554322
Q ss_pred cccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecc
Q psy4869 195 CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINE 274 (2435)
Q Consensus 195 ~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 274 (2435)
.+.++ .|...|.+++|+|+|.+|++++.||+|++||... .+
T Consensus 78 ~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l------------------------------------ 118 (588)
T 2j04_A 78 GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--ML------------------------------------ 118 (588)
T ss_dssp CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EE------------------------------------
T ss_pred eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--ee------------------------------------
Confidence 23333 5588999999999999999999999999998431 00
Q ss_pred cccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccc
Q psy4869 275 LKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAP 354 (2435)
Q Consensus 275 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p 354 (2435)
T Consensus 119 -------------------------------------------------------------------------------- 118 (588)
T 2j04_A 119 -------------------------------------------------------------------------------- 118 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEecccC-----CcEEEEEECCCCCEEEEEeCCCeEEEEecCCcee------eEEEe----eCCCCCeeEEEEccCCCE
Q psy4869 355 IMLLEGHG-----GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE------NIGVM----SGHTGAVMDLKFSTDGCH 419 (2435)
Q Consensus 355 ~~~l~gH~-----~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~------~~~~l----~~h~~~V~~l~~s~dg~~ 419 (2435)
..+. |. ..|.+++|+|||++||+|+.||+|+|||+.++.. .+..+ .+|.+.|.+++|+|||
T Consensus 119 -~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-- 194 (588)
T 2j04_A 119 -TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-- 194 (588)
T ss_dssp -EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--
T ss_pred -eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--
Confidence 0011 22 3588999999999999999999999999987532 34554 6788999999999999
Q ss_pred EEEEeCCCeEEEEECCCCc---eEEEEe-ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc-eEeecCcccEEE
Q psy4869 420 IFTCSTDQTLAVWDLEKGQ---RIKKMK-GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ-AVSMNNTYQVTS 494 (2435)
Q Consensus 420 L~s~s~Dg~I~vwd~~tg~---~v~~l~-~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~-~~~~~~~~~v~s 494 (2435)
+++++.|+.|++||+.+++ ..++++ +|...|.+++|+ + ..+++++ ++.|++||+..++. .....|...+..
T Consensus 195 Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~ 270 (588)
T 2j04_A 195 LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHI 270 (588)
T ss_dssp EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCE
T ss_pred EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEE
Confidence 8899999999999998877 345674 788999999998 4 5677776 69999999998887 555588899999
Q ss_pred EEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEE
Q psy4869 495 VAF--NDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572 (2435)
Q Consensus 495 v~~--sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~ 572 (2435)
++| +|++..+++++.||. ++|..+ .++++||+..+++. |+++++|+... .....
T Consensus 271 va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g-----~~l~~ 326 (588)
T 2j04_A 271 IPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIW-----NEFNN 326 (588)
T ss_dssp EEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTT-----TSSSS
T ss_pred EEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCC-----Cceee
Confidence 999 999999999999999 999987 26699999888875 99999999752 11222
Q ss_pred EeCcccccccCeEEEEEcCCCCEEEEec
Q psy4869 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGS 600 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~spdg~~Lasgs 600 (2435)
+.+ ...|.+++|+|||+.+|+++
T Consensus 327 ~~~-----~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 327 YET-----TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SCC-----EEEEEEEEECTTSSEEEEEE
T ss_pred ecc-----ceEEEEEEECCCCCEEEEEE
Confidence 222 23688999999999999986
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=322.95 Aligned_cols=280 Identities=23% Similarity=0.446 Sum_probs=246.6
Q ss_pred cEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccc--ccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCc
Q psy4869 161 VITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM--AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDI 238 (2435)
Q Consensus 161 ~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~--~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~ 238 (2435)
-...|+|++ + ++|+ .+.|++|+|||.++|++++.+ .+|...|.+|+|+|+|++|++|+.||+|++||+++++.
T Consensus 107 y~~~l~wS~--~-n~lA-vgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~- 181 (420)
T 4gga_A 107 YLNLVDWSS--G-NVLA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR- 181 (420)
T ss_dssp TCBCEEECT--T-SEEE-EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred cceeEEECC--C-CEEE-EEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-
Confidence 356799974 2 3554 456999999999999987765 57888999999999999999999999999999875310
Q ss_pred cccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhh
Q psy4869 239 DTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTR 318 (2435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (2435)
T Consensus 182 -------------------------------------------------------------------------------- 181 (420)
T 4gga_A 182 -------------------------------------------------------------------------------- 181 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeE
Q psy4869 319 SMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENI 398 (2435)
Q Consensus 319 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~ 398 (2435)
...+.+|...|.++.+ ++.+|++|+.|+.+++||........
T Consensus 182 ------------------------------------~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~ 223 (420)
T 4gga_A 182 ------------------------------------LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHV 223 (420)
T ss_dssp ------------------------------------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred ------------------------------------EEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceee
Confidence 1134578888988887 47899999999999999998777777
Q ss_pred EEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCc----eEEEEeccCccccccCcccCCCeEEEE--EeCCCeE
Q psy4869 399 GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ----RIKKMKGHSTFVNSCDPVRRGQLLIAS--GSDDCTV 472 (2435)
Q Consensus 399 ~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~----~v~~l~~h~~~v~sv~~~~~~~~llas--gs~Dg~I 472 (2435)
..+.+|...+..+.|+++++++++++.|+.+++||..+++ .+.....|...|.++.|+|.+..++++ |+.|+.|
T Consensus 224 ~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 8899999999999999999999999999999999998765 456777899999999999998888766 4589999
Q ss_pred EEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe--cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEE
Q psy4869 473 KVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG--IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNA 550 (2435)
Q Consensus 473 ~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs--~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s 550 (2435)
++||++++.....+.....+.++.|+|+++.+++++ .||.|+|||+++++++..+.+|.+.|++|+|+|||++|++|+
T Consensus 304 ~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 999999999999998889999999999999998875 689999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCC
Q psy4869 551 MDNTVRIWDIRPY 563 (2435)
Q Consensus 551 ~Dg~I~lWdl~~~ 563 (2435)
.|++|+|||+...
T Consensus 384 ~D~tvriWdv~~~ 396 (420)
T 4gga_A 384 ADETLRLWRCFEL 396 (420)
T ss_dssp TTTEEEEECCSCS
T ss_pred cCCeEEEEECCCC
Confidence 9999999999754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=322.65 Aligned_cols=281 Identities=18% Similarity=0.351 Sum_probs=242.1
Q ss_pred cccCCcEE--EEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy4869 359 EGHGGEIF--CSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK 436 (2435)
Q Consensus 359 ~gH~~~V~--~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t 436 (2435)
.+|...+. ++.|+ +..+++++.||.|++||+..+.........|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 88 ~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 88 PGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp TTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 36766644 45555 466888999999999999876544444445899999999999999999999999999999999
Q ss_pred CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC-CcceEee-cCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 437 GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK-KNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 437 g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~-~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
++.+..+.+|...|.++.|. +.++++++.|+.|++||++. ......+ .|...|.+++|+|++++|++|+.||.|+
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp CCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 99999999999999999983 35899999999999999984 4444444 5888999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCCEEEEEEcCCCC-EEEEEE--CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC
Q psy4869 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGS-YILSNA--MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV 591 (2435)
Q Consensus 515 lwD~~s~~~v~~l~~h~~~V~~i~~spdg~-~las~s--~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp 591 (2435)
+||+++++.+..+.+|...|.+++|+|++. ++++++ .|+.|++||++. .+++..+..+ ..+.+++|+|
T Consensus 243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~----~~~~~~~~~~-----~~v~~~~~s~ 313 (401)
T 4aez_A 243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT----GARVNTVDAG-----SQVTSLIWSP 313 (401)
T ss_dssp EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT----CCEEEEEECS-----SCEEEEEECS
T ss_pred EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC----CCEEEEEeCC-----CcEEEEEECC
Confidence 999999999999999999999999999765 555655 799999999984 5666666533 3789999999
Q ss_pred CCCEEEE--ecCCCeEEEEECCCCcEE--EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 592 SGLYVTA--GSADKCVYIWDTTTRRIA--YKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 592 dg~~Las--gs~Dg~V~iwd~~s~~~~--~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+|++|++ |+.||.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++|++.
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 9999999 568999999999987554 4467999999999999999999999999999999997
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=307.53 Aligned_cols=253 Identities=26% Similarity=0.420 Sum_probs=213.8
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCc-eeeEEEeeCCCCCeeEEEEcc--CCCEEEEEeCCCeEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE-CENIGVMSGHTGAVMDLKFST--DGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~-~~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s~Dg~I~vw 432 (2435)
.++.+|.+.|++++|+|+|++||+|+.|+.|+|||+... ...+..+.+|.+.|.+++|++ ++++|++++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 467899999999999999999999999999999998743 345677899999999999986 48999999999999999
Q ss_pred ECCCCc--eEEEEeccCccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCcc---eEeecCcccEEEEEECCC------
Q psy4869 433 DLEKGQ--RIKKMKGHSTFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKNQ---AVSMNNTYQVTSVAFNDT------ 500 (2435)
Q Consensus 433 d~~tg~--~v~~l~~h~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~~---~~~~~~~~~v~sv~~sp~------ 500 (2435)
|+++++ .+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++.+.. .....|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 567788999999999999973 46889999999999999987632 223367889999999997
Q ss_pred -------CCEEEEEecCCeEEEEECCCCc----EEEEEecCCCCEEEEEEcCCC---CEEEEEECCCcEEEEEcCCCCCC
Q psy4869 501 -------AECVLTGGIDNDIKMWDLRTNS----VVQKLRGHSDTVTGLSLSPDG---SYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 501 -------g~~l~sgs~dg~V~lwD~~s~~----~v~~l~~h~~~V~~i~~spdg---~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
+++|++|+.|+.|++||+++++ ....+.+|.+.|.+|+|+|++ ++|++++.|++|+|||++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~- 241 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG- 241 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC-
Confidence 5799999999999999998876 667889999999999999985 8999999999999999975211
Q ss_pred CceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
......+..+ .....+.+++|+|+|++|++++.|+.|+||+..
T Consensus 242 ~~~~~~~~~~--~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PWKKTLLKEE--KFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEESSSS--CCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccceeeeecc--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 1112222111 124578999999999999999999999999976
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-27 Score=346.45 Aligned_cols=511 Identities=13% Similarity=0.076 Sum_probs=371.1
Q ss_pred ceEEEEEeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcC----C--e
Q psy4869 25 NVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN----G--S 98 (2435)
Q Consensus 25 ~v~~~~~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~----G--~ 98 (2435)
-+...+ |+ |+.||....+.|.+||+..++. ..+.+|...+.+++|+|||++||.+..+ | .
T Consensus 16 ~~~~~~-~S--~~~iaf~~~~~l~~~~~~gg~~-----------~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~ 81 (1045)
T 1k32_A 16 LLLNPD-IH--GDRIIFVCCDDLWEHDLKSGST-----------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTAD 81 (1045)
T ss_dssp CCEEEE-EE--TTEEEEEETTEEEEEETTTCCE-----------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEE
T ss_pred eEeCcE-Ee--CCEEEEEECCcEEEEECCCCcE-----------EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCe
Confidence 344443 45 4688888778999999876542 2344566778899999999999988643 3 6
Q ss_pred EEEEECCCCCeEEEecCCCCCE-------EEEEEcCCCCEEEEEeCC------CCEEEEEccCCeeEEEEecCCCcEEEE
Q psy4869 99 LKTFSLDTTDVISTFTGHKSAI-------TVIQYDPLGHRLATGSKD------TDIVLWDVVAECGLHRLSGHKGVITDI 165 (2435)
Q Consensus 99 i~i~d~~~~~~~~~l~gH~~~V-------~~l~f~p~g~~laSgs~D------g~I~iWd~~~~~~~~~l~gH~~~V~~v 165 (2435)
|++|++.+++ ...+.+|...+ .+++|+|+|+++++++.| ..|.+||+.++... .+..+. ...+
T Consensus 82 i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~-~l~~~~--~~~~ 157 (1045)
T 1k32_A 82 LYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV-PLNLGP--ATHI 157 (1045)
T ss_dssp EEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE-ECCSCS--CSEE
T ss_pred EEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE-EecCCC--ccee
Confidence 9999998876 67889999998 999999999988888865 35777887776643 333332 3456
Q ss_pred EEeecCCCcEEEEEeC------------CCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcC
Q psy4869 166 RFMSQPGHHFVVSSAK------------DTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVR 233 (2435)
Q Consensus 166 ~~~~~~~~~~l~S~s~------------Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~ 233 (2435)
+|+| + ++++++. +...++|....+.....+.+|.+.+.++.|+++ .++++++.|+++++|.+.
T Consensus 158 ~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~ 232 (1045)
T 1k32_A 158 LFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTD 232 (1045)
T ss_dssp EEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEE
T ss_pred eeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEe
Confidence 7885 4 7888753 445778865544556667899999999999987 667788889999999765
Q ss_pred CCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhh
Q psy4869 234 DRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQ 313 (2435)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (2435)
.....
T Consensus 233 ~~g~~--------------------------------------------------------------------------- 237 (1045)
T 1k32_A 233 LDGKD--------------------------------------------------------------------------- 237 (1045)
T ss_dssp TTSCS---------------------------------------------------------------------------
T ss_pred CCCCc---------------------------------------------------------------------------
Confidence 21000
Q ss_pred hhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC
Q psy4869 314 ELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG 393 (2435)
Q Consensus 314 ~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~ 393 (2435)
...+.+|. .+.+.+|+|||++|+.+ .++.|++||+..
T Consensus 238 -----------------------------------------~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 238 -----------------------------------------LRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp -----------------------------------------CEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred -----------------------------------------ceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 00111222 23456899999999887 589999999843
Q ss_pred ceeeEEEeeC-----------CCCCeeEEEEc-cCCCEEEEEeCCCeEEEEECCCCceEEEEeccCc-cccccCcccCCC
Q psy4869 394 ECENIGVMSG-----------HTGAVMDLKFS-TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHST-FVNSCDPVRRGQ 460 (2435)
Q Consensus 394 ~~~~~~~l~~-----------h~~~V~~l~~s-~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~-~v~sv~~~~~~~ 460 (2435)
. .+..+.. |...+..++|+ |||++|+.++ ++.|++|++.+++.. .+..|.. .+..+.|+ ++
T Consensus 275 ~--~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg- 348 (1045)
T 1k32_A 275 E--KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TK- 348 (1045)
T ss_dssp C--CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SE-
T ss_pred e--EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CC-
Confidence 2 2223433 34579999999 9999999888 789999999877654 4666766 78899999 66
Q ss_pred eEEEEEeCCCeEE-EEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEE
Q psy4869 461 LLIASGSDDCTVK-VWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSL 539 (2435)
Q Consensus 461 ~llasgs~Dg~I~-vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~ 539 (2435)
..++.++.+..+. +||+..++......+...+..++|+|+|++|++++.++.|++||+.+++....+.+|.+.+.+++|
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~ 428 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 428 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred CeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE
Confidence 4566667788888 999987765444456678999999999999999999999999999999988888889999999999
Q ss_pred cCCCCEEEEEECCC----------cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEE
Q psy4869 540 SPDGSYILSNAMDN----------TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWD 609 (2435)
Q Consensus 540 spdg~~las~s~Dg----------~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd 609 (2435)
+|||++|++++.++ .|++||+.. .+ +..+..|. ..+..+.|+|||++|+.++.++...+|+
T Consensus 429 SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~----g~-~~~l~~~~----~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 429 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG----RK-IFAATTEN----SHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT----TE-EEECSCSS----SBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CCCCCeEEEEecCccccccCCCCCeEEEEECCC----Cc-EEEeeCCC----cccCCceEcCCCCEEEEEecccCCcCcc
Confidence 99999999887654 999999973 33 44555443 3567899999999999999877766665
Q ss_pred CCCCc-------------------------------------------EEEEecCCCCCeeEEEEcCCCCEEEE------
Q psy4869 610 TTTRR-------------------------------------------IAYKLPGHNGSVNDVQFHPKEPIIMS------ 640 (2435)
Q Consensus 610 ~~s~~-------------------------------------------~~~~l~~h~~~V~~l~fspd~~~Las------ 640 (2435)
..... .+..+..|.+.+..++|+||+.++++
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~ 579 (1045)
T 1k32_A 500 RVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 579 (1045)
T ss_dssp SSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCS
T ss_pred hhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCc
Confidence 43221 12334457788999999999987775
Q ss_pred -------EECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeecc
Q psy4869 641 -------ASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCT 698 (2435)
Q Consensus 641 -------gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 698 (2435)
...+..|++||+..... ..+. ..+..+..+.+++.|+.+..+ .+.+|....
T Consensus 580 ~~~~~~~~~~~~~l~~~d~~~~~~---~~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~ 637 (1045)
T 1k32_A 580 FAAYYQGAPEKGVLLKYDVKTRKV---TEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLE 637 (1045)
T ss_dssp HHHHHHCCCCCEEEEEEETTTCCE---EEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred ccccccccCCCceEEEEECCCCcE---EEee---cCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence 12245677777753221 1111 334444455555555555555 577777654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-29 Score=312.82 Aligned_cols=289 Identities=12% Similarity=0.121 Sum_probs=251.7
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce--eeEEEeeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEE
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC--ENIGVMSGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWD 433 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~--~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd 433 (2435)
+..+|.+.|++++|+|++++|++|+.||.|++||+.... .....+.+|...|.+++|+|+++ +|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 346899999999999999999999999999999987543 23445668999999999999999 999999999999999
Q ss_pred C-CCCceEEEEec--cCccccccCcccCCCeEEEEEeCCCeEEEEeCCC---------CcceEeecCcccEEEEEECCCC
Q psy4869 434 L-EKGQRIKKMKG--HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK---------KNQAVSMNNTYQVTSVAFNDTA 501 (2435)
Q Consensus 434 ~-~tg~~v~~l~~--h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~---------~~~~~~~~~~~~v~sv~~sp~g 501 (2435)
+ .+++. ..+.+ |...|.++.|.+ ..++++++.|+.|++||++. ++.+..+.+...+.+++|+|++
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred eccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc
Confidence 9 87765 77788 999999999999 46788999999999999987 7777777788999999999987
Q ss_pred CEEEEEecCCeEEEEECCC-Cc--EEEEEecCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCC--CCCCceEEEEeC
Q psy4869 502 ECVLTGGIDNDIKMWDLRT-NS--VVQKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPY--VPGERCVKVMSG 575 (2435)
Q Consensus 502 ~~l~sgs~dg~V~lwD~~s-~~--~v~~l~~h~~~V~~i~~sp-dg~~las~s~Dg~I~lWdl~~~--~~~~~~v~~~~~ 575 (2435)
+++++.||.|++||+++ +. .......|...|.+++|+| ++++|++++.||.|++||++.. ....+....+..
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 99999999999999998 54 3445567889999999999 9999999999999999999853 111356677777
Q ss_pred cccc-----cccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCC-CCCeeEEEEcCCCCEEEEEECCCc-EE
Q psy4869 576 HQHN-----FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGH-NGSVNDVQFHPKEPIIMSASSDKT-IY 648 (2435)
Q Consensus 576 h~~~-----~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h-~~~V~~l~fspd~~~Lasgs~Dg~-I~ 648 (2435)
|... ....+.+++|+|++++|++|+.||.|++||+.+++++..+.+| ...|++++ |++++|++|+.||. .+
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~ 318 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKT 318 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHH
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccc
Confidence 6431 1237899999999999999999999999999999999999998 99999999 99999999999998 66
Q ss_pred EecC
Q psy4869 649 LGES 652 (2435)
Q Consensus 649 vWd~ 652 (2435)
.|+.
T Consensus 319 ~~~~ 322 (342)
T 1yfq_A 319 NAAI 322 (342)
T ss_dssp CSSS
T ss_pred cccc
Confidence 6654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=324.43 Aligned_cols=285 Identities=18% Similarity=0.369 Sum_probs=235.0
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce----------eeEEEeeCCC------------CCeeEEEEccCC
Q psy4869 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC----------ENIGVMSGHT------------GAVMDLKFSTDG 417 (2435)
Q Consensus 360 gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~----------~~~~~l~~h~------------~~V~~l~~s~dg 417 (2435)
.|.+.|++++|+|+|++||+|+.||.|+|||+.... .....+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999987543 2466788998 899999999998
Q ss_pred --CEEEEEeCCCeEEEEECCCCceE---------------------------------------EE-EeccCccccccCc
Q psy4869 418 --CHIFTCSTDQTLAVWDLEKGQRI---------------------------------------KK-MKGHSTFVNSCDP 455 (2435)
Q Consensus 418 --~~L~s~s~Dg~I~vwd~~tg~~v---------------------------------------~~-l~~h~~~v~sv~~ 455 (2435)
.+|++++.|+.|++||+.+++.. .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999765432 12 3679999999999
Q ss_pred ccCCCeEEEEEeCCCeEEEEeCCC-CcceEe-------e-cCcccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcE--
Q psy4869 456 VRRGQLLIASGSDDCTVKVWDPRK-KNQAVS-------M-NNTYQVTSVAFNDTA-ECVLTGGIDNDIKMWDLRTNSV-- 523 (2435)
Q Consensus 456 ~~~~~~llasgs~Dg~I~vwD~~~-~~~~~~-------~-~~~~~v~sv~~sp~g-~~l~sgs~dg~V~lwD~~s~~~-- 523 (2435)
+|++. +|++| .|+.|++||++. +..... + .|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99875 56677 799999999984 333332 1 577789999999998 9999999999999999999887
Q ss_pred --EEEEecCCC------------CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccc--------
Q psy4869 524 --VQKLRGHSD------------TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE-------- 581 (2435)
Q Consensus 524 --v~~l~~h~~------------~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~-------- 581 (2435)
+..+.+|.+ .|.+++|+|+|++|++++. +.|++||++. ..+++..+.+|.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM---ENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC---CSSCSCCEESCGGGTTTHHHHHHT
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC---Cccccceeeccccccccccccccc
Confidence 788888886 9999999999999999999 9999999984 2456667777753211
Q ss_pred ---cCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC---------------------------------CCCC
Q psy4869 582 ---KNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG---------------------------------HNGS 625 (2435)
Q Consensus 582 ---~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~---------------------------------h~~~ 625 (2435)
..+..++|+|+|++|++|+.||.|++||+.+++.+. +.+ +...
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 418 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCc
Confidence 013458999999999999999999999999988763 222 3456
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 626 VNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 626 V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
|..++|+|++++||+++.++ +++|+.
T Consensus 419 i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 419 ILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred eeEEEECCCCCEEEEEecce-eeeecc
Confidence 88999999999999998886 777764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-28 Score=304.21 Aligned_cols=279 Identities=22% Similarity=0.436 Sum_probs=240.7
Q ss_pred EEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccc--ccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCcc
Q psy4869 162 ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM--AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDID 239 (2435)
Q Consensus 162 V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~--~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~ 239 (2435)
..+|+|+++ + +|+ .+.|++|+|||+++|++++.+ .+|...|.+++|+|++++|++|+.|++|++||+++++.
T Consensus 28 ~~~l~WS~~--~-~lA-vg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-- 101 (318)
T 4ggc_A 28 LNLVDWSSG--N-VLA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 101 (318)
T ss_dssp CBCEEECTT--S-EEE-EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred ceEEEECCC--C-EEE-EEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--
Confidence 467999843 3 454 456999999999999988766 57888999999999999999999999999999875321
Q ss_pred ccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhh
Q psy4869 240 TEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRS 319 (2435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (2435)
T Consensus 102 -------------------------------------------------------------------------------- 101 (318)
T 4ggc_A 102 -------------------------------------------------------------------------------- 101 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEE
Q psy4869 320 MKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIG 399 (2435)
Q Consensus 320 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~ 399 (2435)
...+.+|...+.++.+ ++.++++|+.++.+++|+.........
T Consensus 102 -----------------------------------~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~ 144 (318)
T 4ggc_A 102 -----------------------------------LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA 144 (318)
T ss_dssp -----------------------------------EEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred -----------------------------------EEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEE
Confidence 0123467777766555 568999999999999999988777788
Q ss_pred EeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCce----EEEEeccCccccccCcccCCCeEE--EEEeCCCeEE
Q psy4869 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR----IKKMKGHSTFVNSCDPVRRGQLLI--ASGSDDCTVK 473 (2435)
Q Consensus 400 ~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~----v~~l~~h~~~v~sv~~~~~~~~ll--asgs~Dg~I~ 473 (2435)
.+.+|...+..+.|.+++++|++++.|+.|++||+++++. ......|...+..+.+.+.+..++ ++++.++.|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 8899999999999999999999999999999999987753 345567778888888888877655 5677899999
Q ss_pred EEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe--cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC
Q psy4869 474 VWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG--IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM 551 (2435)
Q Consensus 474 vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs--~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~ 551 (2435)
+||.+.........+...+..+.|+|+++.+++++ .||.|++||+++++++..+.+|.+.|++|+|+|||++|++|+.
T Consensus 225 lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 225 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999999888888889999999999999988765 7999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCC
Q psy4869 552 DNTVRIWDIRPY 563 (2435)
Q Consensus 552 Dg~I~lWdl~~~ 563 (2435)
|++|+|||+...
T Consensus 305 D~~v~iWd~~~~ 316 (318)
T 4ggc_A 305 DETLRLWRCFEL 316 (318)
T ss_dssp TTEEEEECCSCC
T ss_pred CCeEEEEECCCC
Confidence 999999999743
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=314.22 Aligned_cols=252 Identities=17% Similarity=0.267 Sum_probs=211.1
Q ss_pred ecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCC--eEEEecCCCCCEEEEEEcC--CCCEEEEEeCCCCEEEEE
Q psy4869 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTD--VISTFTGHKSAITVIQYDP--LGHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 70 ~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~--~~~~l~gH~~~V~~l~f~p--~g~~laSgs~Dg~I~iWd 145 (2435)
.+.||...|.+++|+++|++||+|+.||.|++||+.++. .+..+.||.+.|++++|++ ++++||||+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456888999999999999999999999999999998874 5678999999999999986 489999999999999999
Q ss_pred ccCC--eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc---ccccccccceEEEEEEEeC------
Q psy4869 146 VVAE--CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC---FKTMAAHLTEVWGVCVMRE------ 214 (2435)
Q Consensus 146 ~~~~--~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~---~~~~~~h~~~V~~l~~~p~------ 214 (2435)
+.++ .....+.+|.+.|.+++|+|+..+.+|++++.|++|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9876 3567889999999999999876577899999999999999988742 4567889999999999987
Q ss_pred -----------CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCcc
Q psy4869 215 -----------DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKK 283 (2435)
Q Consensus 215 -----------~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~ 283 (2435)
+.+|++|+.|++|++||++....
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---------------------------------------------- 201 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---------------------------------------------- 201 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSC----------------------------------------------
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCc----------------------------------------------
Confidence 46899999999999999753210
Q ss_pred ceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCC
Q psy4869 284 KWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGG 363 (2435)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~ 363 (2435)
..+...+.+|.+
T Consensus 202 --------------------------------------------------------------------~~~~~~l~~h~~ 213 (316)
T 3bg1_A 202 --------------------------------------------------------------------WKEEQKLEAHSD 213 (316)
T ss_dssp --------------------------------------------------------------------EEEEECCBCCSS
T ss_pred --------------------------------------------------------------------cceeeecccCCC
Confidence 001123568999
Q ss_pred cEEEEEECCCC----CEEEEEeCCCeEEEEecCCc---eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 364 EIFCSKYHPDG----QYIASSGYDRQIFIWSVYGE---CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 364 ~V~~l~fspdg----~~Lasgs~Dg~I~iwd~~~~---~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
.|.+++|+|++ .+||+|+.||.|++||+... ......+..|.+.|.+++|+|++++|++++.|+.|++|+..
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999999987 89999999999999998652 11223456789999999999999999999999999999975
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-30 Score=329.97 Aligned_cols=314 Identities=9% Similarity=0.088 Sum_probs=255.4
Q ss_pred ecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCC
Q psy4869 156 SGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDR 235 (2435)
Q Consensus 156 ~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~ 235 (2435)
+.-...|.+|+|+| ++.++||+|.|++|+ |...++ ++.+|...|++++|+|+| .|+.+.+|+.+..
T Consensus 12 ~~~~~~v~sv~~Sp--DG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 12 KEFEDWKNNLTWAR--DGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN 77 (588)
T ss_dssp CCCSSSSCCEEECT--TSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred hHhhccEEEEEECC--CCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc
Confidence 34567899999984 678999999999999 765554 447999999999999998 4444444432210
Q ss_pred CCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhh
Q psy4869 236 SDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQEL 315 (2435)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 315 (2435)
.
T Consensus 78 ~------------------------------------------------------------------------------- 78 (588)
T 2j04_A 78 G------------------------------------------------------------------------------- 78 (588)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEe-cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCc
Q psy4869 316 RTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLL-EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE 394 (2435)
Q Consensus 316 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l-~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~ 394 (2435)
.+ -+|...|.+++|+|+|.+||+++.||.|++||..+
T Consensus 79 -----------------------------------------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~- 116 (588)
T 2j04_A 79 -----------------------------------------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK- 116 (588)
T ss_dssp -----------------------------------------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-
T ss_pred -----------------------------------------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-
Confidence 00 03467899999999999999999999999999544
Q ss_pred eeeEEEeeCCCC-----CeeEEEEccCCCEEEEEeCCCeEEEEECCCCc-------eEEEE----eccCccccccCcccC
Q psy4869 395 CENIGVMSGHTG-----AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ-------RIKKM----KGHSTFVNSCDPVRR 458 (2435)
Q Consensus 395 ~~~~~~l~~h~~-----~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~-------~v~~l----~~h~~~v~sv~~~~~ 458 (2435)
.+..+. |.. .|.+++|+|||++|++|+.||+|++||+.+++ .+..+ .+|...|.+++|+|+
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 444455 665 59999999999999999999999999999885 36776 667789999999998
Q ss_pred CCeEEEEEeCCCeEEEEeCCCCcce---Eee--cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCC
Q psy4869 459 GQLLIASGSDDCTVKVWDPRKKNQA---VSM--NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDT 533 (2435)
Q Consensus 459 ~~~llasgs~Dg~I~vwD~~~~~~~---~~~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~ 533 (2435)
+ +++++.|+.|++||+..+... ..+ .|...|.+++|+ |++||+++ ++.|++||+.+++......+|.+.
T Consensus 194 g---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 194 V---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp E---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred c---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 7 778899999999999887742 333 466789999999 68999887 699999999998875444489999
Q ss_pred EEEEEE--cCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 534 VTGLSL--SPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 534 V~~i~~--spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
|..+.| +||+..|++++.||+ ++|... .+.++||+..+++. |+++++|+..
T Consensus 268 V~~va~~~s~d~~~La~a~edG~-klw~~d------------------------~~~~spd~~l~a~~--d~~v~lW~~~ 320 (588)
T 2j04_A 268 FHIIPLNHEKESTILLMSNKTSY-KVLLED------------------------ELHVTADNIIAPYL--EKKFKKWSTI 320 (588)
T ss_dssp CCEEEETTCSSCEEEEECSSCEE-EEEESS------------------------SEEEECCCSSHHHH--HHHHHHTTTT
T ss_pred EEEEEeeeCCCCCEEEEEcCCCC-EEEeec------------------------cEEECCCceEEEEc--CCEEEEEECC
Confidence 999999 999999999999999 999975 14588999877775 9999999975
Q ss_pred CCcEEEEecCCCCCeeEEEEcCCCCEEEEEE
Q psy4869 612 TRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 612 s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs 642 (2435)
.+. +..+.+ ...|.+++|+|||+.+|+++
T Consensus 321 g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 321 WNE-FNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp TTS-SSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred CCc-eeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 444 334434 77799999999999999987
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=308.71 Aligned_cols=310 Identities=17% Similarity=0.228 Sum_probs=229.4
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC----eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEE
Q psy4869 111 STFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE----CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186 (2435)
Q Consensus 111 ~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~----~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~ 186 (2435)
..+.||++.|++++|+|+|++||+|+.||.|+|||+... +....+.+|.+.|.+++|+|..++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 457899999999999999999999999999999999875 4677789999999999998753467899999999999
Q ss_pred EEeccCC---------ccccccccccceEEEEEEEeC--CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeec
Q psy4869 187 IWDADTG---------DCFKTMAAHLTEVWGVCVMRE--DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLL 255 (2435)
Q Consensus 187 iWd~~tg---------~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 255 (2435)
+||++++ +.+..+.+|.+.|.+++|+|+ +.+|++++.|+.|++||++.++.+.....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~------------ 152 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL------------ 152 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE------------
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc------------
Confidence 9999988 457778899999999999999 99999999999999999987543211000
Q ss_pred ccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccc
Q psy4869 256 SEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKN 335 (2435)
Q Consensus 256 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~ 335 (2435)
... .
T Consensus 153 ------------~~~------------------------~---------------------------------------- 156 (351)
T 3f3f_A 153 ------------TSE------------------------M---------------------------------------- 156 (351)
T ss_dssp ------------EEE------------------------E----------------------------------------
T ss_pred ------------ccc------------------------c----------------------------------------
Confidence 000 0
Q ss_pred eeeeeecccccCccccccceeEecccCCcEEEEEECCC---CCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEE
Q psy4869 336 YKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPD---GQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDL 411 (2435)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspd---g~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l 411 (2435)
. .......+|...|.+++|+|+ +.+|++++.|+.+.+|+..... .....+.+|...|.++
T Consensus 157 ---~-------------~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 157 ---K-------------VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp ---E-------------SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred ---c-------------ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence 0 000012367888999999997 9999999999999888766543 3466778899999999
Q ss_pred EEccCC----CEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec
Q psy4869 412 KFSTDG----CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN 487 (2435)
Q Consensus 412 ~~s~dg----~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~ 487 (2435)
+|+|++ ++|++++.||.|++||++++........+..........+.
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 271 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD----------------------------- 271 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------------------
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcc-----------------------------
Confidence 999998 79999999999999999766443322221111111100000
Q ss_pred CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 488 NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 488 ~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
..+ .+.....+.....+.+|+....+.+..+.+|.+.|++++|+|++++|++++.||.|++||+..
T Consensus 272 -------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 272 -------VDM--DAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ----------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred -------ccc--ccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 000 011112333455667777778888999999999999999999999999999999999999984
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=310.54 Aligned_cols=299 Identities=21% Similarity=0.296 Sum_probs=244.6
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY--GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~--~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~ 1118 (2435)
-..++|+||++ ++||+|. |+.|+|||..+++....+. +|...|++|+|+|+|++|++|+.||.|++||+++++.+.
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 34567999975 5888887 9999999999998877665 677889999999999999999999999999999999999
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy4869 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1198 (2435)
Q Consensus 1119 ~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~i 1198 (2435)
.+.+|...+.++.++ +..|++++.|+.+++||........ ..+.+|...+..+.+++++.++++++.|+.|++
T Consensus 184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~-----~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV-----ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256 (420)
T ss_dssp EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE-----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceee-----EEecccccceeeeeecCCCCeeeeeeccccceE
Confidence 999999999998875 6899999999999999988754432 234589999999999999999999999999999
Q ss_pred EEccCCc----eeeEeeccCCCEEEEEEeeCC-CEEEEEE--CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEEC
Q psy4869 1199 WGLDYGD----CHKSLLAHEDSVTGVTFVPKT-HYFFTTS--KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGG 1271 (2435)
Q Consensus 1199 wd~~t~~----~~~~~~~h~~~V~~i~~spd~-~~lvsgs--~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~ 1271 (2435)
||...++ .+.....|...|.+++|+|++ ..+++++ .|+.|++||+++.+.+..+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~------------------ 318 (420)
T 4gga_A 257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD------------------ 318 (420)
T ss_dssp EESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE------------------
T ss_pred EeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec------------------
Confidence 9998775 345677899999999999954 5555543 68999999988765543321
Q ss_pred CCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee--cCCeEEEEEcccceEE
Q psy4869 1272 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL--LDTTVKIFFLDTFKFF 1349 (2435)
Q Consensus 1272 d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs--~dG~V~v~d~~~~k~i 1349 (2435)
....+.++.|+|+++.+++++ .||.|+|||+.+++++
T Consensus 319 -----------------------------------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v 357 (420)
T 4gga_A 319 -----------------------------------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357 (420)
T ss_dssp -----------------------------------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred -----------------------------------------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence 134577889999999998865 7899999999999999
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEe
Q psy4869 1350 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1407 (2435)
Q Consensus 1350 ~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~ 1407 (2435)
..+.+|.+.|.+++|+|||++|++|+.|+.|+|||+.+....+....|...+....|.
T Consensus 358 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 358 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------------
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccC
Confidence 9999999999999999999999999999999999998877766666665555444443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=309.74 Aligned_cols=290 Identities=17% Similarity=0.222 Sum_probs=227.7
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce---eeEEEeeCCCCCeeEEEEcc--CCCEEEEEeCCCeEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC---ENIGVMSGHTGAVMDLKFST--DGCHIFTCSTDQTLA 430 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~---~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s~Dg~I~ 430 (2435)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.... .....+.+|...|.+++|++ |+++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4678999999999999999999999999999999997542 34566789999999999999 699999999999999
Q ss_pred EEECCCC---------ceEEEEeccCccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCcceEee--------------
Q psy4869 431 VWDLEKG---------QRIKKMKGHSTFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKNQAVSM-------------- 486 (2435)
Q Consensus 431 vwd~~tg---------~~v~~l~~h~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~~~~~~-------------- 486 (2435)
+||++++ +.+..+.+|...|.++.|.|+. ..++++++.|+.|++||++.++.+..+
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999887 5688889999999999999983 367889999999999999877654332
Q ss_pred cCcccEEEEEECCC---CCEEEEEecCCeEEEEECCCCcE--EEEEecCCCCEEEEEEcCCC----CEEEEEECCCcEEE
Q psy4869 487 NNTYQVTSVAFNDT---AECVLTGGIDNDIKMWDLRTNSV--VQKLRGHSDTVTGLSLSPDG----SYILSNAMDNTVRI 557 (2435)
Q Consensus 487 ~~~~~v~sv~~sp~---g~~l~sgs~dg~V~lwD~~s~~~--v~~l~~h~~~V~~i~~spdg----~~las~s~Dg~I~l 557 (2435)
.+...+.+++|+|+ +.++++++.++.+.+|+...++. +..+.+|...|++++|+|++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 35668999999997 99999999999999999888775 67788999999999999998 89999999999999
Q ss_pred EEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe----cCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcC
Q psy4869 558 WDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG----SADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHP 633 (2435)
Q Consensus 558 Wdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg----s~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fsp 633 (2435)
||++... .......+. .......+++...+++.+ .....+.+|+....+++..+.+|...|++++|+|
T Consensus 245 wd~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 245 FKITEKL----SPLASEESL----TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316 (351)
T ss_dssp EEEEECC-----------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred EeCCCCc----CccccCCcc----cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence 9998531 111111111 122233334444444443 3455677777778889999999999999999999
Q ss_pred CCCEEEEEECCCcEEEecCC
Q psy4869 634 KEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 634 d~~~Lasgs~Dg~I~vWd~~ 653 (2435)
++++|++|+.||.|++|++.
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp SSCCEEEEETTSCEEEEEEC
T ss_pred CCCEEEEecCCCcEEEEecC
Confidence 99999999999999999997
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=307.34 Aligned_cols=296 Identities=19% Similarity=0.239 Sum_probs=249.7
Q ss_pred ccceeEecccCCcEEEEEECCC---CCEEEEEeCCCeEEEEecCC-ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC
Q psy4869 352 FAPIMLLEGHGGEIFCSKYHPD---GQYIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ 427 (2435)
Q Consensus 352 ~~p~~~l~gH~~~V~~l~fspd---g~~Lasgs~Dg~I~iwd~~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 427 (2435)
..+...+.+|.+.|++++|+|+ |++|++|+.||.|++||+.. .......+.+|.+.|.+++|+|++++|++++.||
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 3456678999999999999999 69999999999999999986 4444477889999999999999999999999999
Q ss_pred eEEEEECCCCceEEEEeccCccccccCc--ccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEE
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCDP--VRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVL 505 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~~--~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~ 505 (2435)
.|++||+++++.+. +.+|...|.++.| .+++ .+|++++.|+.|++||+++++.+..+.....+.++.+.+ ..++
T Consensus 109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 184 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMAV 184 (368)
T ss_dssp EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEEE
T ss_pred cEEEEEcCCCCcee-eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--CeeE
Confidence 99999999888765 5679999999999 5655 678899999999999999999988888777777777764 5889
Q ss_pred EEecCCeEEEEECCCCcEEEEE--ecCCCCEEEEEEcCCCCE----EEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc
Q psy4869 506 TGGIDNDIKMWDLRTNSVVQKL--RGHSDTVTGLSLSPDGSY----ILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579 (2435)
Q Consensus 506 sgs~dg~V~lwD~~s~~~v~~l--~~h~~~V~~i~~spdg~~----las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~ 579 (2435)
+++.++.+++||++........ ..+...+.++.+.+++.. +++++.|+.|++||++.... ...+..+.+|...
T Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-AKDNFTFKCHRSN 263 (368)
T ss_dssp EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-HHHSEEEECSEEC
T ss_pred EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-cccceeeeeeecc
Confidence 9999999999999987554333 234556777777766554 99999999999999985311 1455666666531
Q ss_pred c--------ccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 580 F--------EKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 580 ~--------~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
. ...+.+++|+|++++|++|+.||.|++||+++++++..+.+|...|++++|+|++++|++|+.|+..+.|+
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 1 11589999999999999999999999999999999999999999999999999999999999999766666
Q ss_pred C
Q psy4869 652 S 652 (2435)
Q Consensus 652 ~ 652 (2435)
+
T Consensus 344 ~ 344 (368)
T 3mmy_A 344 F 344 (368)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=318.55 Aligned_cols=292 Identities=25% Similarity=0.415 Sum_probs=239.6
Q ss_pred CCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCee
Q psy4869 72 PGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG 151 (2435)
Q Consensus 72 ~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~ 151 (2435)
.++...|.++++ ++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 345566777776 7899999999999999999999999999999999999999 689999999999999999999999
Q ss_pred EEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccc---cccccccceEEEEEEEeCCCeEEEeeCCCcEE
Q psy4869 152 LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCF---KTMAAHLTEVWGVCVMREDSYLISGSNDAELK 228 (2435)
Q Consensus 152 ~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~---~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~ 228 (2435)
+..+.+|.+.|.+++|+ +.+|++++.||.|++||+++++.+ ..+.+|...|.+++| +++++++|+.||.|+
T Consensus 206 ~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIK 279 (435)
T ss_dssp EEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 99999999999999995 247999999999999999998876 677899999999998 788999999999999
Q ss_pred EEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccc
Q psy4869 229 VWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFG 308 (2435)
Q Consensus 229 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (2435)
+||+++++.
T Consensus 280 vwd~~~~~~----------------------------------------------------------------------- 288 (435)
T 1p22_A 280 VWNTSTCEF----------------------------------------------------------------------- 288 (435)
T ss_dssp EEETTTCCE-----------------------------------------------------------------------
T ss_pred EEECCcCcE-----------------------------------------------------------------------
Confidence 999874310
Q ss_pred cchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEE
Q psy4869 309 IDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFI 388 (2435)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~i 388 (2435)
...+.+|...|.++.| ++++|++|+.||.|++
T Consensus 289 ----------------------------------------------~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~i 320 (435)
T 1p22_A 289 ----------------------------------------------VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRL 320 (435)
T ss_dssp ----------------------------------------------EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEE
T ss_pred ----------------------------------------------EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 1124578888999999 5789999999999999
Q ss_pred EecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCc---------eEEEEeccCccccccCcccCC
Q psy4869 389 WSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ---------RIKKMKGHSTFVNSCDPVRRG 459 (2435)
Q Consensus 389 wd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~---------~v~~l~~h~~~v~sv~~~~~~ 459 (2435)
||+... ..+..+.+|...|.+++| ++.+|++++.||.|++||+.+++ .+..+.+|...|.++.| +
T Consensus 321 wd~~~~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~- 394 (435)
T 1p22_A 321 WDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--D- 394 (435)
T ss_dssp EETTTC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--C-
T ss_pred EECCCC-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--C-
Confidence 999865 356678899999999999 78899999999999999998766 88999999999999998 3
Q ss_pred CeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEEC
Q psy4869 460 QLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFN 498 (2435)
Q Consensus 460 ~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~s 498 (2435)
+..+++++.||.|++||+.............+..++.|.
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp SSCEEECCSSSEEEEEC----------------------
T ss_pred CCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeee
Confidence 356889999999999999877665555555555555554
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-29 Score=311.21 Aligned_cols=252 Identities=24% Similarity=0.374 Sum_probs=207.9
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEEEEcc--CCCEEEEEeCCCeEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDLKFST--DGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s~Dg~I~vw 432 (2435)
.++.+|.+.|++++|+|+|++||+|+.|+.|+|||+..+. ..+..+.+|.+.|.+++|++ ++++|++++.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3567999999999999999999999999999999997653 34667899999999999986 48899999999999999
Q ss_pred ECCCC--ceEEEEeccCccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCcce---Ee-ecCcccEEEEEECCC-----
Q psy4869 433 DLEKG--QRIKKMKGHSTFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKNQA---VS-MNNTYQVTSVAFNDT----- 500 (2435)
Q Consensus 433 d~~tg--~~v~~l~~h~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~~~---~~-~~~~~~v~sv~~sp~----- 500 (2435)
|++++ +.+..+.+|...|.+++|+|+. ..+|++|+.|+.|++||++.+... .. ..|...+.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99987 4667788999999999999974 468999999999999999876422 11 246778999999997
Q ss_pred ------------CCEEEEEecCCeEEEEECCCC---cEEEEEecCCCCEEEEEEcCCC----CEEEEEECCCcEEEEEcC
Q psy4869 501 ------------AECVLTGGIDNDIKMWDLRTN---SVVQKLRGHSDTVTGLSLSPDG----SYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 501 ------------g~~l~sgs~dg~V~lwD~~s~---~~v~~l~~h~~~V~~i~~spdg----~~las~s~Dg~I~lWdl~ 561 (2435)
+++|++|+.|+.|++||++.. +++..+.+|.+.|.+++|+|++ ++|++++.|++|+|||++
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 478999999999999999865 4677889999999999999987 899999999999999997
Q ss_pred CCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 562 PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 562 ~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
...........+..| ...+.+++|+|+|++|++|+.|+.|+||+..
T Consensus 247 ~~~~~~~~~~~~~~~----~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASSNTWSPKLLHKF----NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp STTCCCCBCCEEEEC----SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CccccchhhhhhhcC----CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 522111112223333 3578999999999999999999999999975
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=297.64 Aligned_cols=275 Identities=20% Similarity=0.366 Sum_probs=231.6
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEecCCcee-eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE
Q psy4869 365 IFCSKYHPDGQYIASSGYDRQIFIWSVYGECE-NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM 443 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l 443 (2435)
.++|+|++++ +||+| .|++|+|||+.++.. ....+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999876 77766 599999999976532 33345678899999999999999999999999999999999999999
Q ss_pred eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe--ecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Q psy4869 444 KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS--MNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTN 521 (2435)
Q Consensus 444 ~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~--~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~ 521 (2435)
.+|...+.++.+. +.++++++.++.+++|+......... ..+...+.++.+++++++|++++.||.|++||++++
T Consensus 106 ~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 106 TSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp ECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred cCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 9999888766543 35789999999999999887654433 367888999999999999999999999999999986
Q ss_pred cE----EEEEecCCCCEEEEEEcCCCCEE---EEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC
Q psy4869 522 SV----VQKLRGHSDTVTGLSLSPDGSYI---LSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594 (2435)
Q Consensus 522 ~~----v~~l~~h~~~V~~i~~spdg~~l---as~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~ 594 (2435)
+. ......|.+.|.++.++|++..+ ++++.|++|++||.+. .........+ ..+..+.|+++++
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~----~~~~~~~~~~-----~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS----GACLSAVDAH-----SQVCSILWSPHYK 253 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT----CCEEEEEECS-----SCEEEEEEETTTT
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc----ccccccccce-----eeeeeeeeccccc
Confidence 53 45567788999999999976543 3566899999999874 3333333322 3678999999999
Q ss_pred EEEEec--CCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 595 YVTAGS--ADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 595 ~Lasgs--~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.+++++ .|+.|+|||+++++++..+.+|.+.|++|+|+|++++|++|+.||+|++||+.
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 887654 79999999999999999999999999999999999999999999999999985
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-28 Score=303.65 Aligned_cols=282 Identities=15% Similarity=0.146 Sum_probs=246.3
Q ss_pred EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc---eeEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEe
Q psy4869 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD---CHKSLLAHEDSVTGVTFVPKTH-YFFTTSKDGRVKQWD 1152 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~---~~~~l~~h~~~V~~v~fsp~~~-~l~s~s~Dg~V~iwD 1152 (2435)
...+|...|.+++|+|++++|++++.||.|++|++..++ ....+..|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345799999999999999999999999999999998887 3455668999999999999999 999999999999999
Q ss_pred C-CCcceeEEEEEEEeecc--cccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC---------CceeeEeeccCCCEEEE
Q psy4869 1153 A-DNFERIVTLHFFISLYG--HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY---------GDCHKSLLAHEDSVTGV 1220 (2435)
Q Consensus 1153 ~-~~~~~~~~~~~~~~~~~--h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t---------~~~~~~~~~h~~~V~~i 1220 (2435)
+ ..... . .+.. |...|.+++|++ +.+|++++.|+.|++||+++ ++.+..+. |...|.++
T Consensus 86 ~~~~~~~-~------~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 86 LIGSPSF-Q------ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM 156 (342)
T ss_dssp SSSSSSE-E------ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred eccCCce-E------eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence 9 77643 2 2357 999999999999 99999999999999999998 77777665 89999999
Q ss_pred EEeeCCCEEEEEECCCcEEEEECCC-CceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccc
Q psy4869 1221 TFVPKTHYFFTTSKDGRVKQWDADN-FERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRS 1299 (2435)
Q Consensus 1221 ~~spd~~~lvsgs~Dg~I~vwD~~~-~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~ 1299 (2435)
+|+|++ +++++.|+.|++||++. .......
T Consensus 157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~----------------------------------------------- 187 (342)
T 1yfq_A 157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI----------------------------------------------- 187 (342)
T ss_dssp EECSSE--EEEEESTTEEEEEESSCCTTCCCEE-----------------------------------------------
T ss_pred EecCCc--EEEEeCCCeEEEEECCcccccccee-----------------------------------------------
Confidence 999876 99999999999999876 4321000
Q ss_pred cceeeeeecccccccccEEEEEecC-CcceeEEeecCCeEEEEEcccc------eEEEEecCCCC---------CeEEEE
Q psy4869 1300 HKVLSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFLDTF------KFFISLYGHKL---------PVLSLD 1363 (2435)
Q Consensus 1300 ~~~~~~~~~~~~~~~~~i~~ia~sp-dg~~lavgs~dG~V~v~d~~~~------k~i~~~~~h~~---------~V~~la 1363 (2435)
....+...+.+++|+| ++++|++++.+|.+++|+++.. +....+..|.. .|.+++
T Consensus 188 ---------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 258 (342)
T 1yfq_A 188 ---------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258 (342)
T ss_dssp ---------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE
T ss_pred ---------eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEE
Confidence 0112346789999999 9999999999999999999886 77888888865 999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCceEEEeccc-ccceEEEEEeeCCCEEEEEeCCCc-EEEEEC
Q psy4869 1364 MSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH-EDSVTGVTFVPKTHYFFTTSKDGR-VKQWDA 1427 (2435)
Q Consensus 1364 ~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h-~~~V~~laf~P~~~~laSgg~Dg~-V~lWd~ 1427 (2435)
|+|++++|++|+.||.|++||+.+++++..+.+| ..+|++++ |++.+|++++.||. .+.|..
T Consensus 259 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred EcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 9999999999999999999999999999999998 99999999 99999999999998 666664
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=302.72 Aligned_cols=309 Identities=14% Similarity=0.153 Sum_probs=235.4
Q ss_pred EEEeCCCeEEEEEEecCCCEEEEEeCC-------CeEEEEEccCCce----------eecccccccceeEEEEecCCCCC
Q psy4869 920 RTIDTGSYALSVCFVPGDRHVLVGTKD-------GRLLIVDIGAGEI----------LEDIPAHSQELWSVAMLPDQFNP 982 (2435)
Q Consensus 920 ~~l~~~~~v~~vafspdg~~Lavg~~d-------g~V~vwd~~sg~~----------v~~~~~h~~~V~sv~~s~d~~~~ 982 (2435)
..++.+.++.+++|+||+++|+.|+.+ ++|.+|++..+.. ...+..|.+.|.++++.++.. .
T Consensus 9 ~~~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~-~ 87 (365)
T 4h5i_A 9 ASYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGII-L 87 (365)
T ss_dssp EEEECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEE-E
T ss_pred eecCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEE-E
Confidence 566778899999999999999998643 3699999976542 123567888888988876520 0
Q ss_pred CCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEE--C
Q psy4869 983 NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL--L 1060 (2435)
Q Consensus 983 ~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~--~ 1060 (2435)
...+..+..|++++.|+.+++|+++...... .... .............+.+++|||||++|++++ .
T Consensus 88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~ 155 (365)
T 4h5i_A 88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQL-------EFLT-----SVDFDASTNADDYTKLVYISREGTVAAIASSKV 155 (365)
T ss_dssp EECCCCHHHHHHTSCCCCEEEEEEETTTTEE-------EEEE-----EECSSCCCCTTCCEEEEEECTTSSCEEEEESCS
T ss_pred EEECCCccEEEEecCCCcEEEEEecCCCceE-------EEee-----eeceeecCCcccCEEEEEEcCCCCEEEEEECCC
Confidence 0000111223344568889999875322100 0000 000011122345689999999999988765 5
Q ss_pred CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEE--EeccCCCEEEEEEccCCCE
Q psy4869 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS--LLAHEDSVTGVTFVPKTHY 1138 (2435)
Q Consensus 1061 dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~--l~~h~~~V~~v~fsp~~~~ 1138 (2435)
|+.|+|||+.+++.+..+. |...|.+++|+|||++|++++.+ .+++|+..+++.+.. ...|...|.+++|+|++..
T Consensus 156 d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~ 233 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV 233 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE
T ss_pred CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE
Confidence 7999999999999988886 77889999999999999998854 577777777776544 3468889999999999999
Q ss_pred EEEEeCCC----cEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEe-ecc
Q psy4869 1139 FFTTSKDG----RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL-LAH 1213 (2435)
Q Consensus 1139 l~s~s~Dg----~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~-~~h 1213 (2435)
+++++.|+ .+++|++........ ....+..|..+|++++|+|+|++||+|+.|+.|+|||+++++++..+ .+|
T Consensus 234 l~~~s~d~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH 311 (365)
T 4h5i_A 234 LIAASLKKGKGIVLTKISIKSGNTSVL--RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH 311 (365)
T ss_dssp EEEEEESSSCCEEEEEEEEETTEEEEE--EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred EEEEecCCcceeEEeecccccceecce--eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence 99999887 588888876543222 22345688999999999999999999999999999999999998875 689
Q ss_pred CCCEEEEEEeeCCCEEEEEECCCcEEEEECCC
Q psy4869 1214 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1245 (2435)
Q Consensus 1214 ~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~ 1245 (2435)
...|++|+|+||+++|++++.|++|+|||+..
T Consensus 312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 312 SFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999999999999999999864
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=318.78 Aligned_cols=330 Identities=14% Similarity=0.244 Sum_probs=247.6
Q ss_pred CccceEEEeecCCCCeEEEEEcCCeEEEEECCCCC-----------eEEEecCCC------------CCEEEEEEcCCC-
Q psy4869 74 EKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTD-----------VISTFTGHK------------SAITVIQYDPLG- 129 (2435)
Q Consensus 74 ~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~-----------~~~~l~gH~------------~~V~~l~f~p~g- 129 (2435)
+...|.+++|+|+|.+||+|+.||.|++||+.+++ .+..+.+|. +.|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 45678999999999999999999999999999887 588999998 889999999998
Q ss_pred -CEEEEEeCCCCEEEEEccCCeeE---------------------------------------EE-EecCCCcEEEEEEe
Q psy4869 130 -HRLATGSKDTDIVLWDVVAECGL---------------------------------------HR-LSGHKGVITDIRFM 168 (2435)
Q Consensus 130 -~~laSgs~Dg~I~iWd~~~~~~~---------------------------------------~~-l~gH~~~V~~v~~~ 168 (2435)
.+|++|+.|+.|+|||+...... .. +.+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 89999999999999998764331 13 36899999999998
Q ss_pred ecCCCcEEEEEeCCCcEEEEeccC-Ccccc-------ccccccceEEEEEEEeCC-CeEEEeeCCCcEEEEEcCCCCCcc
Q psy4869 169 SQPGHHFVVSSAKDTFVKIWDADT-GDCFK-------TMAAHLTEVWGVCVMRED-SYLISGSNDAELKVWNVRDRSDID 239 (2435)
Q Consensus 169 ~~~~~~~l~S~s~Dg~I~iWd~~t-g~~~~-------~~~~h~~~V~~l~~~p~~-~~l~s~s~Dg~v~vwdl~~~~~~~ 239 (2435)
| ++.+|++| .|+.|++||+++ ++++. .+.+|...|.+++|+|++ .+|++|+.||+|++||++.++...
T Consensus 187 ~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 187 S--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp T--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred C--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 6 46688888 899999999994 44444 467899999999999998 899999999999999998653210
Q ss_pred ccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhh
Q psy4869 240 TEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRS 319 (2435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (2435)
.. ..
T Consensus 264 ~~--------~~-------------------------------------------------------------------- 267 (447)
T 3dw8_B 264 RH--------SK-------------------------------------------------------------------- 267 (447)
T ss_dssp TT--------CE--------------------------------------------------------------------
T ss_pred ce--------ee--------------------------------------------------------------------
Confidence 00 00
Q ss_pred cccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEE
Q psy4869 320 MKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIG 399 (2435)
Q Consensus 320 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~ 399 (2435)
.+..... ......+.+|...|.+++|+|+|++|++++. |.|++||+......+.
T Consensus 268 ---------~~~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 268 ---------LFEEPED----------------PSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp ---------EECCC---------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred ---------EeccCCC----------------ccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 0000000 0001134578889999999999999999999 9999999986445566
Q ss_pred EeeCCCCC---------------eeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEE
Q psy4869 400 VMSGHTGA---------------VMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIA 464 (2435)
Q Consensus 400 ~l~~h~~~---------------V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~lla 464 (2435)
.+.+|... +..++|+|++++|++++.||.|++||+.+++.+ .+.+|..........+.. .+.
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~ 398 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPR--KVC 398 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCC--CEE
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCc--ccc
Confidence 67777542 334999999999999999999999999998875 666666544433332222 222
Q ss_pred EEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 465 SGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 465 sgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
.++... ........+.....|..++|+|++++||+++.++ +++|.-+
T Consensus 399 ~~~~~~-------~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 399 ASGKRK-------KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CSSCCC-------TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccCCcc-------cccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 222110 0111111234566789999999999999998775 7788654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=313.20 Aligned_cols=274 Identities=28% Similarity=0.466 Sum_probs=243.4
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK 436 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t 436 (2435)
...+|...|+|+.| ++++|++|+.||.|++||+... .....+.+|.+.|.+++| ++++|++|+.||.|++||+++
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 34567888999887 7999999999999999998764 345678899999999999 788999999999999999999
Q ss_pred CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceE---e-ecCcccEEEEEECCCCCEEEEEecCCe
Q psy4869 437 GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV---S-MNNTYQVTSVAFNDTAECVLTGGIDND 512 (2435)
Q Consensus 437 g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~---~-~~~~~~v~sv~~sp~g~~l~sgs~dg~ 512 (2435)
++.+..+.+|...|.++.|.+ ..+++|+.|+.|++||++.+.... . ..+...|.+++| +++++++|+.||.
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~ 277 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT 277 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred CcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence 999999999999999999864 488999999999999999877652 2 257788999999 7899999999999
Q ss_pred EEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCC
Q psy4869 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592 (2435)
Q Consensus 513 V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spd 592 (2435)
|++||+++++.+..+.+|...|.++.| ++++|++|+.||.|++||++ ..+++..+.+|. ..+.++.| +
T Consensus 278 i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~----~~v~~~~~--~ 345 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE----CGACLRVLEGHE----ELVRCIRF--D 345 (435)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETT----TCCEEEEECCCS----SCEEEEEC--C
T ss_pred EEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC----CCCEEEEEeCCc----CcEEEEEe--c
Confidence 999999999999999999999999999 57899999999999999998 467888888775 36788888 7
Q ss_pred CCEEEEecCCCeEEEEECCCCc---------EEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCC
Q psy4869 593 GLYVTAGSADKCVYIWDTTTRR---------IAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 593 g~~Lasgs~Dg~V~iwd~~s~~---------~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~ 654 (2435)
+++|++|+.||.|++||+++++ .+..+.+|.+.|.+++| ++.+|++|+.||.|++||+..
T Consensus 346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 8999999999999999998766 88999999999999999 678899999999999999974
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=305.47 Aligned_cols=296 Identities=18% Similarity=0.205 Sum_probs=247.9
Q ss_pred EcCCCeEEEEEecCCcCEEEEEEcCC---CCEEEEEECCCcEEEEEccC-Ccee-EEEeccCCCEEEEEEccCCCEEEEE
Q psy4869 1068 FLDTFKFFISLYGHKLPVLSLDMSYD---STLIATGSGDRTVKVWGLDY-GDCH-KSLLAHEDSVTGVTFVPKTHYFFTT 1142 (2435)
Q Consensus 1068 d~~~~~~~~~l~~h~~~V~sl~~spd---g~~L~Sgs~Dg~I~vWd~~t-~~~~-~~l~~h~~~V~~v~fsp~~~~l~s~ 1142 (2435)
+....+.+..+.+|...|.+++|+|+ +++|++|+.||.|++||+++ +..+ ..+.+|...|.+++|+|++++|+++
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 44566777788899999999999999 59999999999999999987 5555 7788899999999999999999999
Q ss_pred eCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEE--eCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEE
Q psy4869 1143 SKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM--SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGV 1220 (2435)
Q Consensus 1143 s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~--s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i 1220 (2435)
+.|+.|++||+.+...... ..|...|.+++| ++++.+|++++.||.|++||+++++.+..+..|. .+.++
T Consensus 105 ~~dg~v~iwd~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~ 176 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQI-------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCA 176 (368)
T ss_dssp ETTSEEEEEETTTTEEEEE-------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEE
T ss_pred cCCCcEEEEEcCCCCceee-------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEE
Confidence 9999999999998765442 368999999999 8899999999999999999999999888887654 56666
Q ss_pred EEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccccccccccccccc
Q psy4869 1221 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSH 1300 (2435)
Q Consensus 1221 ~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~ 1300 (2435)
.+. ...+++++.|+.+.+||++.........
T Consensus 177 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------------------------------------- 207 (368)
T 3mmy_A 177 DVI--YPMAVVATAERGLIVYQLENQPSEFRRI----------------------------------------------- 207 (368)
T ss_dssp EEE--TTEEEEEEGGGCEEEEECSSSCEEEEEC-----------------------------------------------
T ss_pred Eec--CCeeEEEeCCCcEEEEEeccccchhhhc-----------------------------------------------
Confidence 665 4578888899999999887643322110
Q ss_pred ceeeeeecccccccccEEEEEecCCcce----eEEeecCCeEEEEEcccc---eEEEEecCCCC------------CeEE
Q psy4869 1301 KVLSLLHTRTLKLEEQVLCARVSPDSKL----LAVSLLDTTVKIFFLDTF---KFFISLYGHKL------------PVLS 1361 (2435)
Q Consensus 1301 ~~~~~~~~~~~~~~~~i~~ia~spdg~~----lavgs~dG~V~v~d~~~~---k~i~~~~~h~~------------~V~~ 1361 (2435)
.........++++.++... +++++.||.|++|++... +.+..+.+|.. +|.+
T Consensus 208 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 278 (368)
T 3mmy_A 208 ---------ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG 278 (368)
T ss_dssp ---------CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEE
T ss_pred ---------cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEE
Confidence 0112334555555555444 999999999999999886 56777788876 7999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1362 LDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1362 la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
++|+|++++|++|+.||.|++||+.+++++..+.+|..+|++++|+|++.+|++++.|+..+.|++..
T Consensus 279 ~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 279 IAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999998666666544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=304.70 Aligned_cols=258 Identities=17% Similarity=0.289 Sum_probs=222.5
Q ss_pred ecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECC--CCCeEEEecCCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEE
Q psy4869 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLD--TTDVISTFTGHKSAITVIQYDPL--GHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 70 ~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~--~~~~~~~l~gH~~~V~~l~f~p~--g~~laSgs~Dg~I~iWd 145 (2435)
.+.||...|.+++|++++.+||+++.||.|++||+. +.+.+..+.+|.+.|++++|+++ +++|++|+.||.|+|||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 456888999999999999999999999999999998 66788899999999999999987 89999999999999999
Q ss_pred ccCCe--eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc--ccccccccceEEEEEEEe--------
Q psy4869 146 VVAEC--GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC--FKTMAAHLTEVWGVCVMR-------- 213 (2435)
Q Consensus 146 ~~~~~--~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~--~~~~~~h~~~V~~l~~~p-------- 213 (2435)
+.+.+ .+..+.+|...|.+++|+|+..+.+|++++.|+.|++||++++.. ...+..|...|.+++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 165 (379)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC------
T ss_pred cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc
Confidence 99887 678889999999999998764367899999999999999998854 345678999999999999
Q ss_pred -----CCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEE
Q psy4869 214 -----EDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQV 288 (2435)
Q Consensus 214 -----~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 288 (2435)
++.+|++++.|+.|++||++.....
T Consensus 166 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------------------------------- 195 (379)
T 3jrp_A 166 HNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------------------------------------------- 195 (379)
T ss_dssp ----CTTCEEEEEETTSCEEEEEEETTTTE--------------------------------------------------
T ss_pred ccCCCCCCEEEEEeCCCeEEEEEecCCCcc--------------------------------------------------
Confidence 6899999999999999998743100
Q ss_pred EEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEE
Q psy4869 289 FRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCS 368 (2435)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l 368 (2435)
......+.+|...|.++
T Consensus 196 ---------------------------------------------------------------~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 196 ---------------------------------------------------------------YVLESTLEGHSDWVRDV 212 (379)
T ss_dssp ---------------------------------------------------------------EEEEEEECCCSSCEEEE
T ss_pred ---------------------------------------------------------------eeeEEEEecccCcEeEE
Confidence 00112456899999999
Q ss_pred EECCC---CCEEEEEeCCCeEEEEecCCc----eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceE
Q psy4869 369 KYHPD---GQYIASSGYDRQIFIWSVYGE----CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 369 ~fspd---g~~Lasgs~Dg~I~iwd~~~~----~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
+|+|+ +.+|++++.||.|++||+... .........|...|.+++|+|++++|++++.||.|++||+..+...
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 99999 899999999999999999864 2223333458999999999999999999999999999999865433
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=295.36 Aligned_cols=257 Identities=26% Similarity=0.415 Sum_probs=218.4
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC-ceeeEEEeeCCCCCeeEEEEccC--CCEEEEEeCCCeEEE
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTD--GCHIFTCSTDQTLAV 431 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-~~~~~~~l~~h~~~V~~l~~s~d--g~~L~s~s~Dg~I~v 431 (2435)
..++.+|.+.|++++|+|+|++|++|+.||.|++||+.. .......+.+|.+.|.+++|+++ +++|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 356889999999999999999999999999999999974 33455678899999999999976 899999999999999
Q ss_pred EECCCCc--eEEEEeccCccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCcceE---eecCcccEEEEEECC------
Q psy4869 432 WDLEKGQ--RIKKMKGHSTFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKNQAV---SMNNTYQVTSVAFND------ 499 (2435)
Q Consensus 432 wd~~tg~--~v~~l~~h~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~~~~---~~~~~~~v~sv~~sp------ 499 (2435)
||+.+++ .+..+.+|...|.+++|+|+. ..++++++.|+.|++||++...... ...+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999987 778888999999999999983 4678899999999999998774322 236788999999999
Q ss_pred -------CCCEEEEEecCCeEEEEECCCCc----EEEEEecCCCCEEEEEEcCC---CCEEEEEECCCcEEEEEcCCCCC
Q psy4869 500 -------TAECVLTGGIDNDIKMWDLRTNS----VVQKLRGHSDTVTGLSLSPD---GSYILSNAMDNTVRIWDIRPYVP 565 (2435)
Q Consensus 500 -------~g~~l~sgs~dg~V~lwD~~s~~----~v~~l~~h~~~V~~i~~spd---g~~las~s~Dg~I~lWdl~~~~~ 565 (2435)
++++|++|+.||.|++||+++++ .+..+.+|...|.+++|+|+ +++|++++.||.|++||++....
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 69999999999999999998764 45677899999999999999 89999999999999999985321
Q ss_pred CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q psy4869 566 GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR 614 (2435)
Q Consensus 566 ~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~ 614 (2435)
......+.. ......+.+++|+|+|++|++++.||.|++||+..+.
T Consensus 244 -~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 244 -PWKKTLLKE--EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp -CCEEEESSS--SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred -cceeeeecc--ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 111222222 1223578999999999999999999999999987553
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=304.42 Aligned_cols=282 Identities=16% Similarity=0.290 Sum_probs=232.2
Q ss_pred EEEeecCCCCeEE-EEEcCCeEEEEECCCC----CeEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccCC---
Q psy4869 79 CQLSPNHDSSQLA-VAYTNGSLKTFSLDTT----DVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAE--- 149 (2435)
Q Consensus 79 ~~~~~~~d~~~la-v~~~~G~i~i~d~~~~----~~~~~l~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~~--- 149 (2435)
..++++++...++ .++.+|.|++|+++.. ..+..+.+|.+.|++++|+| ++++||+|+.||.|+|||+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 3467777764443 4678999999999765 34557889999999999999 8999999999999999999887
Q ss_pred ----eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccc--ccccceEEEEEEEeCCCeEEEeeC
Q psy4869 150 ----CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM--AAHLTEVWGVCVMREDSYLISGSN 223 (2435)
Q Consensus 150 ----~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~--~~h~~~V~~l~~~p~~~~l~s~s~ 223 (2435)
+.+..+.+|.+.|.+++|+|+. ..+|++++.|+.|++||+++++++..+ .+|.+.|.+++|+|++++|++++.
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred cccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 5678899999999999998642 358999999999999999999999999 899999999999999999999999
Q ss_pred CCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccC
Q psy4869 224 DAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNID 303 (2435)
Q Consensus 224 Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (2435)
|+.|++||++.++.+
T Consensus 197 d~~i~iwd~~~~~~~----------------------------------------------------------------- 211 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVV----------------------------------------------------------------- 211 (402)
T ss_dssp TSEEEEEETTTTEEE-----------------------------------------------------------------
T ss_pred CCcEEEEeCCCCcee-----------------------------------------------------------------
Confidence 999999998753100
Q ss_pred ccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEe-cccCCc-EEEEEECCCCCEEEEE-
Q psy4869 304 DFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLL-EGHGGE-IFCSKYHPDGQYIASS- 380 (2435)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l-~gH~~~-V~~l~fspdg~~Lasg- 380 (2435)
..+ .+|.+. +.++.|+|+|.+|++|
T Consensus 212 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 239 (402)
T 2aq5_A 212 ----------------------------------------------------AEKDRPHEGTRPVHAVFVSEGKILTTGF 239 (402)
T ss_dssp ----------------------------------------------------EEEECSSCSSSCCEEEECSTTEEEEEEE
T ss_pred ----------------------------------------------------eeeccCCCCCcceEEEEcCCCcEEEEec
Confidence 011 245554 7889999999999999
Q ss_pred --eCCCeEEEEecCCceeeEEE-eeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCce-EEEEec--cCcccccc
Q psy4869 381 --GYDRQIFIWSVYGECENIGV-MSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEKGQR-IKKMKG--HSTFVNSC 453 (2435)
Q Consensus 381 --s~Dg~I~iwd~~~~~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~-v~~l~~--h~~~v~sv 453 (2435)
+.|+.|++||+......... ...|...|..++|+|++++|+++ +.|+.|++||+.+++. +..+.. |...+.++
T Consensus 240 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~ 319 (402)
T 2aq5_A 240 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGM 319 (402)
T ss_dssp CTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEE
T ss_pred cCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccce
Confidence 79999999999865432222 23578889999999999999755 4799999999998874 555554 45889999
Q ss_pred CcccCCCeEEEEEeCCCeEEEEeCCCCc
Q psy4869 454 DPVRRGQLLIASGSDDCTVKVWDPRKKN 481 (2435)
Q Consensus 454 ~~~~~~~~llasgs~Dg~I~vwD~~~~~ 481 (2435)
+|+|++..+ ++.++.+++|++..+.
T Consensus 320 ~~sp~~~~~---~s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 320 GYMPKRGLE---VNKCEIARFYKLHERK 344 (402)
T ss_dssp EECCGGGSC---GGGTEEEEEEEEETTE
T ss_pred EEecccccc---eecceeEEEEEcCCCc
Confidence 999987543 2467799999987654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-27 Score=304.24 Aligned_cols=280 Identities=17% Similarity=0.248 Sum_probs=237.7
Q ss_pred EEEEECCCCCE-EEEEeCCCeEEEEecCCcee---eEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCC---
Q psy4869 366 FCSKYHPDGQY-IASSGYDRQIFIWSVYGECE---NIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQTLAVWDLEKG--- 437 (2435)
Q Consensus 366 ~~l~fspdg~~-Lasgs~Dg~I~iwd~~~~~~---~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg--- 437 (2435)
..++++|+... +++|+.||.|+||++..... ....+.+|.+.|.+++|+| ++++|++++.||.|++||+.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 35788887654 44678999999999865322 2345678999999999999 9999999999999999999987
Q ss_pred ----ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee---cCcccEEEEEECCCCCEEEEEecC
Q psy4869 438 ----QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGID 510 (2435)
Q Consensus 438 ----~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~---~~~~~v~sv~~sp~g~~l~sgs~d 510 (2435)
+.+..+.+|...|.+++|+|++..++++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++|+.|
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 197 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence 6788999999999999999998889999999999999999999888777 378899999999999999999999
Q ss_pred CeEEEEECCCCcEEEEE-ecCCCC-EEEEEEcCCCCEEEEE---ECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeE
Q psy4869 511 NDIKMWDLRTNSVVQKL-RGHSDT-VTGLSLSPDGSYILSN---AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLL 585 (2435)
Q Consensus 511 g~V~lwD~~s~~~v~~l-~~h~~~-V~~i~~spdg~~las~---s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~ 585 (2435)
|.|++||+++++.+..+ .+|.+. +.++.|+|++++|++| +.|+.|++||++... ..+...... ....+.
T Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~---~~~~~~~~~---~~~~v~ 271 (402)
T 2aq5_A 198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE---EPLSLQELD---TSSGVL 271 (402)
T ss_dssp SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS---SCSEEEECC---CCSSCE
T ss_pred CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc---CCceEEecc---CCCcee
Confidence 99999999999999998 788876 8999999999999999 799999999998532 222222211 124689
Q ss_pred EEEEcCCCCEEE-EecCCCeEEEEECCCCcE-EEEecC--CCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 586 RCAWSVSGLYVT-AGSADKCVYIWDTTTRRI-AYKLPG--HNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 586 ~v~~spdg~~La-sgs~Dg~V~iwd~~s~~~-~~~l~~--h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.++|+|++++|+ +|+.||.|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++.
T Consensus 272 ~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 272 LPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp EEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence 999999999996 566899999999999874 444444 5699999999999998775 57799999986
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=297.04 Aligned_cols=361 Identities=13% Similarity=0.081 Sum_probs=214.7
Q ss_pred eeeCCCCceEEEEEeCC---CCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEE
Q psy4869 18 IIASPNCNVVFVTLKNQ---EGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAY 94 (2435)
Q Consensus 18 ~~~~~~~~v~~~~~~~~---~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~ 94 (2435)
...+.+.....++...+ .+++|+.|.++.|+||+......... ..........-.+...+..+.|++.
T Consensus 10 ~~lpl~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------- 80 (393)
T 4gq1_A 10 YQLPLNVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGS-TGLTLQELFTIQTGLPTLHLSFSSS-------- 80 (393)
T ss_dssp EECCTTCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSC-CSEEEEEEEEEECSSCEEEEEECTT--------
T ss_pred eEecCCCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccc-cccceeeeEEEecCCCeeeEeecCC--------
Confidence 34455666666655433 45688888999999999753321110 0000000000001111222222221
Q ss_pred cCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeE-----EEEecCCCcEEEEEEee
Q psy4869 95 TNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL-----HRLSGHKGVITDIRFMS 169 (2435)
Q Consensus 95 ~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~-----~~l~gH~~~V~~v~~~~ 169 (2435)
......+|...+....+.+++.+||+|+.|++|+|||...+... ..+.||.+.|.+|+|+|
T Consensus 81 --------------~~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p 146 (393)
T 4gq1_A 81 --------------CSYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIAD 146 (393)
T ss_dssp --------------CEEECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEE
T ss_pred --------------ccccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEcc
Confidence 12233456777777777888899999999999999999887643 23579999999999987
Q ss_pred c------CCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCC-eEEEeeCCCcEEEEEcCCCCCccccc
Q psy4869 170 Q------PGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDS-YLISGSNDAELKVWNVRDRSDIDTED 242 (2435)
Q Consensus 170 ~------~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~Dg~v~vwdl~~~~~~~~~~ 242 (2435)
. .++++|+|+|.|++|+|||++++.++..+..|...|.+++|+|++. +|++++.|++|++||++.++......
T Consensus 147 ~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 147 VYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp EECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred ccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence 2 2567999999999999999999998888889999999999999875 79999999999999998754211100
Q ss_pred hhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhccc
Q psy4869 243 KDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKR 322 (2435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (2435)
...
T Consensus 227 ~~~----------------------------------------------------------------------------- 229 (393)
T 4gq1_A 227 QTE----------------------------------------------------------------------------- 229 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccC-----------------------------------------------------------------------------
Confidence 000
Q ss_pred CCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee
Q psy4869 323 KNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS 402 (2435)
Q Consensus 323 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~ 402 (2435)
..|...+....+.+.. ......
T Consensus 230 ------------------------------------~~~~~~~~s~~~~~~~----------------------~~~~~~ 251 (393)
T 4gq1_A 230 ------------------------------------LVKNPWLLTLNTLPLV----------------------NTCHSS 251 (393)
T ss_dssp -------------------------------------CSCCCSEEEESGGGC----------------------------
T ss_pred ------------------------------------CcccceEEecccccce----------------------eeeecc
Confidence 0000000000000000 001123
Q ss_pred CCCCCeeEEEEc-cCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc
Q psy4869 403 GHTGAVMDLKFS-TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN 481 (2435)
Q Consensus 403 ~h~~~V~~l~~s-~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~ 481 (2435)
+|...|..+.|+ +|++.|++++.|+.+++||+..++....+..|...+..+.+.++.... .
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~----------------- 313 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI-S----------------- 313 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE-C-----------------
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc-c-----------------
Confidence 466667777765 577777777777778888877777777777777666666666653111 0
Q ss_pred ceEeecCcccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy4869 482 QAVSMNNTYQVTSVAFND--TAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559 (2435)
Q Consensus 482 ~~~~~~~~~~v~sv~~sp--~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWd 559 (2435)
.....+ ...|+| ++.++++|+.||.|++||+.+++.+..+.+|...|.+|+|+|||++||+++.|| +.+|.
T Consensus 314 -----~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 314 -----LFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp -----SSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred -----ccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 001111 223333 444677788899999999999999988889999999999999999999998766 66666
Q ss_pred cC
Q psy4869 560 IR 561 (2435)
Q Consensus 560 l~ 561 (2435)
+.
T Consensus 387 L~ 388 (393)
T 4gq1_A 387 LM 388 (393)
T ss_dssp EG
T ss_pred Ee
Confidence 54
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-26 Score=295.73 Aligned_cols=248 Identities=23% Similarity=0.399 Sum_probs=219.4
Q ss_pred EEeeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEECCC----------CceEEEEeccCccccccCcccCCCeEEEEEe
Q psy4869 399 GVMSGHTGAVMDLKFSTD-GCHIFTCSTDQTLAVWDLEK----------GQRIKKMKGHSTFVNSCDPVRRGQLLIASGS 467 (2435)
Q Consensus 399 ~~l~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~vwd~~t----------g~~v~~l~~h~~~v~sv~~~~~~~~llasgs 467 (2435)
.....|.+.|++++|+|+ +.+|++++.||.|++||+.+ .+.+..+.+|...+.+++|++.+..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 67899999999999999987 6788889999999999999999887899999
Q ss_pred CCCeEEEEeCCCCcc-------eEee-cCcccEEEEEECC-CCCEEEEEecCCeEEEEECCCC---cEEEEEecCCCCEE
Q psy4869 468 DDCTVKVWDPRKKNQ-------AVSM-NNTYQVTSVAFND-TAECVLTGGIDNDIKMWDLRTN---SVVQKLRGHSDTVT 535 (2435)
Q Consensus 468 ~Dg~I~vwD~~~~~~-------~~~~-~~~~~v~sv~~sp-~g~~l~sgs~dg~V~lwD~~s~---~~v~~l~~h~~~V~ 535 (2435)
.||.|++||+..+.. ...+ .|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987322 2222 5778899999999 7889999999999999999987 57788889999999
Q ss_pred EEEEcCCCC-EEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC-EEEEecCCCeEEEEECCC-
Q psy4869 536 GLSLSPDGS-YILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL-YVTAGSADKCVYIWDTTT- 612 (2435)
Q Consensus 536 ~i~~spdg~-~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~-~Lasgs~Dg~V~iwd~~s- 612 (2435)
+|+|+|++. +|++|+.||.|++||++.. ..++..+.+|. ..+.++.|+|+++ +|++++.|+.|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~---~~~~~~~~~h~----~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNL---KLKLHSFESHK----DEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCT---TSCSEEEECCS----SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCC---CCCeEEeecCC----CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 999999987 6889999999999999852 35667777764 4789999999995 699999999999999987
Q ss_pred -------------CcEEEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEecCC
Q psy4869 613 -------------RRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESP 653 (2435)
Q Consensus 613 -------------~~~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~I~vWd~~ 653 (2435)
.+++..+.+|...|++++|+|+++ +|++++.||.|++|+++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 478888899999999999999999 99999999999999986
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-25 Score=286.36 Aligned_cols=304 Identities=14% Similarity=0.196 Sum_probs=250.1
Q ss_pred EEeCCCCEEEEEccC--C--eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccc-----ccccccc
Q psy4869 134 TGSKDTDIVLWDVVA--E--CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFK-----TMAAHLT 204 (2435)
Q Consensus 134 Sgs~Dg~I~iWd~~~--~--~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~-----~~~~h~~ 204 (2435)
+++.|+.++||.+.. . +.+..+..|. .+.+++|+| ++.++++++.|+.|++||+++|+.+. .+.+|.+
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 170 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG 170 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC
Confidence 455666555555433 4 4566666654 455999986 66788999999999999999999876 5568999
Q ss_pred eEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccc
Q psy4869 205 EVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKK 284 (2435)
Q Consensus 205 ~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~ 284 (2435)
.|++++|.+++.++++++.|+.|++||+++++.
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~----------------------------------------------- 203 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAY----------------------------------------------- 203 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE-----------------------------------------------
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceE-----------------------------------------------
Confidence 999999999999999999999999999874310
Q ss_pred eEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCc
Q psy4869 285 WLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGE 364 (2435)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~ 364 (2435)
...+.+|...
T Consensus 204 ----------------------------------------------------------------------~~~~~~~~~~ 213 (433)
T 3bws_A 204 ----------------------------------------------------------------------KATVDLTGKW 213 (433)
T ss_dssp ----------------------------------------------------------------------EEEEECSSSS
T ss_pred ----------------------------------------------------------------------EEEEcCCCCC
Confidence 0122356778
Q ss_pred EEEEEECCCCCEEEE-EeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe--------CCCeEEEEECC
Q psy4869 365 IFCSKYHPDGQYIAS-SGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS--------TDQTLAVWDLE 435 (2435)
Q Consensus 365 V~~l~fspdg~~Las-gs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s--------~Dg~I~vwd~~ 435 (2435)
+.+++|+|+++++++ ++.|+.|++||+.... ....+.. ...+.+++|+|++++|++++ .|+.|++||+.
T Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred eeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence 899999999998855 4589999999997653 3334443 45699999999999999988 58899999999
Q ss_pred CCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEec------
Q psy4869 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI------ 509 (2435)
Q Consensus 436 tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~------ 509 (2435)
+++.+..+ .|...+..+.|.|+++.++++++.|+.|++||+.+++....+.+...+.+++|+|+|+++++++.
T Consensus 292 ~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 370 (433)
T 3bws_A 292 KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPT 370 (433)
T ss_dssp TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTT
T ss_pred CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccc
Confidence 98877665 45557788999999989999999999999999999988888888888999999999999998876
Q ss_pred ---------CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcC
Q psy4869 510 ---------DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM-DNTVRIWDIR 561 (2435)
Q Consensus 510 ---------dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~-Dg~I~lWdl~ 561 (2435)
||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |+.|++|++.
T Consensus 371 ~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 371 EGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred cccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 57999999999999988876 457999999999999998875 9999999986
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=283.06 Aligned_cols=279 Identities=11% Similarity=0.147 Sum_probs=215.7
Q ss_pred ceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEE-EEEeCCCeEEEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHI-FTCSTDQTLAVW 432 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L-~s~s~Dg~I~vw 432 (2435)
|+..+.+|.+.|++++|+|||++|++|+.+| ++|||+....... .. +...+..+++.++++.+ ++++.|+.|++|
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-SQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-EE--ECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-ee--ecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 3445688999999999999999999998775 7899987643322 22 22358888999888877 457778999999
Q ss_pred ECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC-cceEeecCcccEEEEEECCCCCEEEE--Eec
Q psy4869 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK-NQAVSMNNTYQVTSVAFNDTAECVLT--GGI 509 (2435)
Q Consensus 433 d~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~-~~~~~~~~~~~v~sv~~sp~g~~l~s--gs~ 509 (2435)
|+.+++.+..+. |...|.++.+.++. ++.+ .|+.|++||+..+ +.+..+.. ....+++++ .++++ |+.
T Consensus 87 d~~~~~~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~ 157 (355)
T 3vu4_A 87 DDVKKQDVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFN 157 (355)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSC
T ss_pred ECCCCcEEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCc
Confidence 999999999887 56678888887653 3333 4789999999987 65555544 445566777 66666 588
Q ss_pred CCeEEEEECCCCc---------------E-EEEEecCCCCEEEEEEcCCCCEEEEEECCCc-EEEEEcCCCCCCCceEEE
Q psy4869 510 DNDIKMWDLRTNS---------------V-VQKLRGHSDTVTGLSLSPDGSYILSNAMDNT-VRIWDIRPYVPGERCVKV 572 (2435)
Q Consensus 510 dg~V~lwD~~s~~---------------~-v~~l~~h~~~V~~i~~spdg~~las~s~Dg~-I~lWdl~~~~~~~~~v~~ 572 (2435)
||.|++||+++++ + +..+.+|.+.|.+++|+|||++|++|+.|++ |+|||++ ..+++..
T Consensus 158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~----~~~~~~~ 233 (355)
T 3vu4_A 158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE----DGVLVRE 233 (355)
T ss_dssp TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT----TCCEEEE
T ss_pred CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC----CCcEEEE
Confidence 9999999999875 2 6788999999999999999999999999999 9999998 4677888
Q ss_pred Ee-C-cccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcE--EEEec---------------------CCCCCee
Q psy4869 573 MS-G-HQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI--AYKLP---------------------GHNGSVN 627 (2435)
Q Consensus 573 ~~-~-h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~--~~~l~---------------------~h~~~V~ 627 (2435)
+. + |. ..|.+++|+|+|++|++|+.|+.|++||++.+.. ...+. .+.....
T Consensus 234 ~~~g~h~----~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T 3vu4_A 234 FRRGLDR----ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGC 309 (355)
T ss_dssp EECTTCC----SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCC
T ss_pred EEcCCCC----CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCce
Confidence 87 4 54 4799999999999999999999999999976531 11111 1123347
Q ss_pred EEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 628 DVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 628 ~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.++|+++++.|++++.||.+++|++.
T Consensus 310 ~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 310 KIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 79999999999999999999999986
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=324.61 Aligned_cols=256 Identities=20% Similarity=0.335 Sum_probs=217.1
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEcc--CCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEE
Q psy4869 110 ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV--AECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKI 187 (2435)
Q Consensus 110 ~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~--~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~i 187 (2435)
+..+.||.+.|++++|+|+|++||+|+.||.|+|||+. +...+..+.+|.++|++++|+++.++.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45678999999999999999999999999999999998 4567788999999999999987655789999999999999
Q ss_pred EeccCCc--cccccccccceEEEEEEEeC--CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCce
Q psy4869 188 WDADTGD--CFKTMAAHLTEVWGVCVMRE--DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLT 263 (2435)
Q Consensus 188 Wd~~tg~--~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (2435)
||+++++ .+..+.+|...|.+++|+|+ +.++++|+.||.|++||++.+...
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~------------------------- 136 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT------------------------- 136 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-------------------------
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-------------------------
Confidence 9999997 67888899999999999999 999999999999999998753110
Q ss_pred eeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecc
Q psy4869 264 VSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQK 343 (2435)
Q Consensus 264 v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~ 343 (2435)
T Consensus 137 -------------------------------------------------------------------------------- 136 (753)
T 3jro_A 137 -------------------------------------------------------------------------------- 136 (753)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccccceeEecccCCcEEEEEECC-------------CCCEEEEEeCCCeEEEEecCCce---eeEEEeeCCCCC
Q psy4869 344 DVGRTSNLFAPIMLLEGHGGEIFCSKYHP-------------DGQYIASSGYDRQIFIWSVYGEC---ENIGVMSGHTGA 407 (2435)
Q Consensus 344 ~~~~~~~~~~p~~~l~gH~~~V~~l~fsp-------------dg~~Lasgs~Dg~I~iwd~~~~~---~~~~~l~~h~~~ 407 (2435)
....+.+|...|.+++|+| ++.+|++|+.||.|++||++... .....+.+|.+.
T Consensus 137 ----------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 137 ----------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (753)
T ss_dssp ----------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred ----------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence 0112457888999999999 58999999999999999987542 445677899999
Q ss_pred eeEEEEccC---CCEEEEEeCCCeEEEEECCCCc-----eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC
Q psy4869 408 VMDLKFSTD---GCHIFTCSTDQTLAVWDLEKGQ-----RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK 479 (2435)
Q Consensus 408 V~~l~~s~d---g~~L~s~s~Dg~I~vwd~~tg~-----~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~ 479 (2435)
|.+++|+|+ +.+|++++.||.|++||+.+++ .+.....|...+.+++|+|++. ++++++.||.|++||++.
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCS
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCC
Confidence 999999999 8999999999999999998864 3333456888999999999874 677899999999999985
Q ss_pred Cc
Q psy4869 480 KN 481 (2435)
Q Consensus 480 ~~ 481 (2435)
+.
T Consensus 286 ~~ 287 (753)
T 3jro_A 286 EG 287 (753)
T ss_dssp SS
T ss_pred CC
Confidence 44
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=321.72 Aligned_cols=256 Identities=17% Similarity=0.288 Sum_probs=219.4
Q ss_pred ecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECC--CCCeEEEecCCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEE
Q psy4869 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLD--TTDVISTFTGHKSAITVIQYDPL--GHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 70 ~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~--~~~~~~~l~gH~~~V~~l~f~p~--g~~laSgs~Dg~I~iWd 145 (2435)
.+.||...|.+++|+|++.++++|+.||.|++||+. ++..+..+.+|.+.|++++|+|+ +++|++|+.||.|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 467899999999999999999999999999999998 56788899999999999999988 99999999999999999
Q ss_pred ccCCe--eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc--ccccccccceEEEEEEEe--------
Q psy4869 146 VVAEC--GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC--FKTMAAHLTEVWGVCVMR-------- 213 (2435)
Q Consensus 146 ~~~~~--~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~--~~~~~~h~~~V~~l~~~p-------- 213 (2435)
+.+++ .+..+.+|.+.|.+++|+|+.++.+|++++.||.|++||++++.. ...+.+|...|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence 99887 678889999999999999764467899999999999999998844 445678999999999999
Q ss_pred -----CCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEE
Q psy4869 214 -----EDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQV 288 (2435)
Q Consensus 214 -----~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 288 (2435)
++.+|++|+.||+|++||++.+...
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-------------------------------------------------- 193 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------------------------------------------- 193 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTE--------------------------------------------------
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCccc--------------------------------------------------
Confidence 5899999999999999998743100
Q ss_pred EEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEE
Q psy4869 289 FRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCS 368 (2435)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l 368 (2435)
..+...+.+|.+.|+++
T Consensus 194 ---------------------------------------------------------------~~~~~~~~~h~~~V~~l 210 (753)
T 3jro_A 194 ---------------------------------------------------------------YVLESTLEGHSDWVRDV 210 (753)
T ss_dssp ---------------------------------------------------------------EEEEEEECCCSSCEEEE
T ss_pred ---------------------------------------------------------------ceeeeeecCCCCcEEEE
Confidence 00112456899999999
Q ss_pred EECCC---CCEEEEEeCCCeEEEEecCCcee----eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q psy4869 369 KYHPD---GQYIASSGYDRQIFIWSVYGECE----NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ 438 (2435)
Q Consensus 369 ~fspd---g~~Lasgs~Dg~I~iwd~~~~~~----~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~ 438 (2435)
+|+|+ |.+|++|+.||.|++||+..... .......|.+.|.+++|+|++++|++++.||.|++||+..+.
T Consensus 211 ~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999 89999999999999999976421 223345689999999999999999999999999999998543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-24 Score=276.05 Aligned_cols=335 Identities=13% Similarity=0.187 Sum_probs=260.1
Q ss_pred cEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeE-EEeeCCCcEEEEEcCCCCCccccchhhhhhhcce
Q psy4869 174 HFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYL-ISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQ 252 (2435)
Q Consensus 174 ~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l-~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~ 252 (2435)
.++++++.|+.|++||+++++++..+..|. .+.+++|+|+++++ ++++.|++|++||+.+++.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~-------------- 67 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI-------------- 67 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--------------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--------------
Confidence 578999999999999999999998888775 48999999999986 57779999999998743100
Q ss_pred eecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeC
Q psy4869 253 LLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDR 332 (2435)
Q Consensus 253 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~ 332 (2435)
T Consensus 68 -------------------------------------------------------------------------------- 67 (391)
T 1l0q_A 68 -------------------------------------------------------------------------------- 67 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEE-eCCCeEEEEecCCceeeEEEeeCCCCCeeEE
Q psy4869 333 EKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASS-GYDRQIFIWSVYGECENIGVMSGHTGAVMDL 411 (2435)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l 411 (2435)
..+..| ..+.+++|+|+|++|+.+ +.++.|++||+..... ...+. +...+.++
T Consensus 68 -----------------------~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~ 121 (391)
T 1l0q_A 68 -----------------------ATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGL 121 (391)
T ss_dssp -----------------------EEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEE
T ss_pred -----------------------EEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEe-CCCCcceE
Confidence 001112 278899999999988654 4679999999986543 33344 44578999
Q ss_pred EEccCCCEE-EEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcc
Q psy4869 412 KFSTDGCHI-FTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTY 490 (2435)
Q Consensus 412 ~~s~dg~~L-~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~ 490 (2435)
+|++++++| ++++.|+.|++||+.+++.+..+..|.. +..+.|.+++..++++++.|+.|++||+++++....+.+..
T Consensus 122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 200 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS-PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC-cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC
Confidence 999999987 6777899999999999999888887654 58899999998888899999999999999998888888888
Q ss_pred cEEEEEECCCCCEEEEEe---cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCCCC
Q psy4869 491 QVTSVAFNDTAECVLTGG---IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYI-LSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs---~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~l-as~s~Dg~I~lWdl~~~~~~ 566 (2435)
.+.+++|+|+|++|++++ .++.|++||+++++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+..
T Consensus 201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~---- 275 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT---- 275 (391)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT----
T ss_pred CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCC----
Confidence 899999999999999988 68999999999999998888765 57899999999988 5668899999999984
Q ss_pred CceEEEEeCccccccc-C-e---------EEEEEcCCC----------CEEEEecCCCeEEEEECCCCcEEEEecCCCCC
Q psy4869 567 ERCVKVMSGHQHNFEK-N-L---------LRCAWSVSG----------LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGS 625 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~-~-i---------~~v~~spdg----------~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~ 625 (2435)
.+.+..+..+...... . + ....|+.+. ..+...+.|..+++||..++... .+..+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~~~~~ 351 (391)
T 1l0q_A 276 NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----KKQNP 351 (391)
T ss_dssp TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----CSSSC
T ss_pred CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc----CcCCC
Confidence 4566666544322110 0 0 011122211 33555667889999999888642 23333
Q ss_pred eeEEEEcCCCCEEEEE
Q psy4869 626 VNDVQFHPKEPIIMSA 641 (2435)
Q Consensus 626 V~~l~fspd~~~Lasg 641 (2435)
...|+++|.+.++.
T Consensus 352 --~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 352 --THTYSETGIYTVRL 365 (391)
T ss_dssp --EECCSSCEEEEEEE
T ss_pred --eEEeCCCceEEEEE
Confidence 35788888766543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=286.97 Aligned_cols=308 Identities=15% Similarity=0.132 Sum_probs=241.0
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCe---EEEEEec-------------------------------------
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK---FFISLYG------------------------------------- 1080 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~---~~~~l~~------------------------------------- 1080 (2435)
.++.+++|+++|++|+++. ++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 5788999999999777665 8899999998888 6555543
Q ss_pred -----------------CCcCEEEEEEcCCCCEE-EEEECCCcEEEEEcc--CCceeEEEe--ccCCCEEEEEEccCCCE
Q psy4869 1081 -----------------HKLPVLSLDMSYDSTLI-ATGSGDRTVKVWGLD--YGDCHKSLL--AHEDSVTGVTFVPKTHY 1138 (2435)
Q Consensus 1081 -----------------h~~~V~sl~~spdg~~L-~Sgs~Dg~I~vWd~~--t~~~~~~l~--~h~~~V~~v~fsp~~~~ 1138 (2435)
|...|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33379999999999996 889999999999999 888888886 56789999999999999
Q ss_pred EEEEeCCCcEEEEeCCCcceeE-EEEEEEeecccccCeEEEEEeCC---CCEEEEEeCCCcEEEEEccCCceeeE-eecc
Q psy4869 1139 FFTTSKDGRVKQWDADNFERIV-TLHFFISLYGHKLPVLSLDMSYD---STLIATGSGDRTVKVWGLDYGDCHKS-LLAH 1213 (2435)
Q Consensus 1139 l~s~s~Dg~V~iwD~~~~~~~~-~~~~~~~~~~h~~~V~~l~~s~d---g~~l~sgs~Dg~V~iwd~~t~~~~~~-~~~h 1213 (2435)
|++++.++.|++|++.+..... .. ..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+.. +.+|
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQ---EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCC---CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred EEEEeCCCcEEEEecCCcccccccc---eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 9999999999999998766442 11 123478899999999999 99999999999999999999988877 5589
Q ss_pred CCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccc
Q psy4869 1214 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEET 1293 (2435)
Q Consensus 1214 ~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~ 1293 (2435)
...|.+++|+ ++++|++++.|+.|++||+++.+.+..+........... + +
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~-----~--------------- 291 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLN--------D-----Q--------------- 291 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCC--------T-----T---------------
T ss_pred CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhh--------h-----c---------------
Confidence 9999999999 999999999999999999999887776653221100000 0 0
Q ss_pred cccccccceeeeeecccccccccEEEEEecCCcceeEEee-cCCeEEEEEc--ccc---eEEEEecCCCCCeEEEEEecC
Q psy4869 1294 KDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-LDTTVKIFFL--DTF---KFFISLYGHKLPVLSLDMSYD 1367 (2435)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs-~dG~V~v~d~--~~~---k~i~~~~~h~~~V~~la~spd 1367 (2435)
. .................+.+++|+|++++|++++ .++.|+||++ ..+ +.+..+..| +.|.+++|+|+
T Consensus 292 ~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 292 H-----LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp S-----BC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred c-----cccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 0 0000000001112346789999999999999999 8999999999 555 778888888 89999999996
Q ss_pred CCEEEEEeC------CCcEEEEeCCC
Q psy4869 1368 STLIATGSG------DRTVKVWGLDY 1387 (2435)
Q Consensus 1368 g~~L~sGg~------Dg~V~iwdl~~ 1387 (2435)
+.+++.++. ++.|.+|.+..
T Consensus 366 ~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 366 EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred cEEEEEecccCCCCCCcceEEEEEEc
Confidence 555555443 45578887643
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-24 Score=280.10 Aligned_cols=319 Identities=11% Similarity=0.062 Sum_probs=252.8
Q ss_pred CEEEEE---EcCCCCEEEEEE--------------CCCcEEEEE--cCCC--eEEEEEecCCcCEEEEEEcCCCCEEEEE
Q psy4869 1042 QVLCAR---VSPDSKLLAVSL--------------LDTTVKIFF--LDTF--KFFISLYGHKLPVLSLDMSYDSTLIATG 1100 (2435)
Q Consensus 1042 ~v~~l~---~spdg~~Lavg~--------------~dg~V~i~d--~~~~--~~~~~l~~h~~~V~sl~~spdg~~L~Sg 1100 (2435)
.+..++ |+|++..+++.. .++.+.||. ..++ +.+..+..+ ..+.+++|+|++.+++++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~ 140 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPL 140 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEB
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEe
Confidence 445555 666666555433 223234444 4334 566666655 445699999977888888
Q ss_pred ECCCcEEEEEccCCceeEE-----EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCe
Q psy4869 1101 SGDRTVKVWGLDYGDCHKS-----LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPV 1175 (2435)
Q Consensus 1101 s~Dg~I~vWd~~t~~~~~~-----l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V 1175 (2435)
+.++.|++||+.+++.+.. +.+|...|.+++|++++.++++++.|+.|++||+++++....+. .|...+
T Consensus 141 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~------~~~~~~ 214 (433)
T 3bws_A 141 LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD------LTGKWS 214 (433)
T ss_dssp TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE------CSSSSE
T ss_pred CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc------CCCCCe
Confidence 8899999999999988873 34688899999999999999999999999999999877665543 688899
Q ss_pred EEEEEeCCCCEEEEEe-CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE--------CCCcEEEEECCCC
Q psy4869 1176 LSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--------KDGRVKQWDADNF 1246 (2435)
Q Consensus 1176 ~~l~~s~dg~~l~sgs-~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs--------~Dg~I~vwD~~~~ 1246 (2435)
.+++|+++++.+++++ .|+.|++||+++++.+..+.. ...+.+++|+|+++.|++++ .|+.|++||+++.
T Consensus 215 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 215 KILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred eEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 9999999999886554 799999999999988777755 44599999999999999888 3677888877654
Q ss_pred ceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCc
Q psy4869 1247 ERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326 (2435)
Q Consensus 1247 ~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg 1326 (2435)
+.+..+ .....+.+++|+|++
T Consensus 294 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~~g 314 (433)
T 3bws_A 294 KLIDTI-----------------------------------------------------------GPPGNKRHIVSGNTE 314 (433)
T ss_dssp EEEEEE-----------------------------------------------------------EEEECEEEEEECSST
T ss_pred cEEeec-----------------------------------------------------------cCCCCcceEEECCCC
Confidence 332211 112356788999999
Q ss_pred cee-EEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeC---------------CCcEEEEeCCCCce
Q psy4869 1327 KLL-AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG---------------DRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1327 ~~l-avgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~---------------Dg~V~iwdl~~gk~ 1390 (2435)
+.+ ++++.++.|++||+.+++.+..+. +...+.+++|+|||++|++++. ||.|++||+.++++
T Consensus 315 ~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 315 NKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred CEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 755 566899999999999998887776 6678999999999999988876 57999999999998
Q ss_pred EEEecccccceEEEEEeeCCCEEEEEeC-CCcEEEEECCC
Q psy4869 1391 HKSLLAHEDSVTGVTFVPKTHYFFTTSK-DGRVKQWDADN 1429 (2435)
Q Consensus 1391 ~~~~~~h~~~V~~laf~P~~~~laSgg~-Dg~V~lWd~~~ 1429 (2435)
+..+..+ ..+.+++|+|++.+|++++. |+.|++|+++.
T Consensus 394 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8887764 57999999999999988775 99999999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-24 Score=274.75 Aligned_cols=310 Identities=16% Similarity=0.116 Sum_probs=250.9
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEEccCCceeEEEeccCCCEEEEE
Q psy4869 1053 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLI-ATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131 (2435)
Q Consensus 1053 ~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L-~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~ 1131 (2435)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 356777789999999999999999988775 58999999999876 566789999999999999988887665 899999
Q ss_pred EccCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEE-EEEeCCCcEEEEEccCCceeeE
Q psy4869 1132 FVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLI-ATGSGDRTVKVWGLDYGDCHKS 1209 (2435)
Q Consensus 1132 fsp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-~sgs~Dg~V~iwd~~t~~~~~~ 1209 (2435)
|+|++++|++++ .++.|++||+.+++....+. +...+.+++|+++++.+ ++++.|+.|++||+.+++.+..
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999876554 67999999999887655543 44578999999999977 6777899999999999998887
Q ss_pred eeccCCCEEEEEEeeCCCEE-EEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccc
Q psy4869 1210 LLAHEDSVTGVTFVPKTHYF-FTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE 1288 (2435)
Q Consensus 1210 ~~~h~~~V~~i~~spd~~~l-vsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~ 1288 (2435)
+..| ..+.++.|+|+++.| ++++.|+.|++||+++.+.+..+.
T Consensus 154 ~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----------------------------------- 197 (391)
T 1l0q_A 154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----------------------------------- 197 (391)
T ss_dssp EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------------------------------
T ss_pred EecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-----------------------------------
Confidence 7655 467999999999887 456678999999998754332211
Q ss_pred ccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee---cCCeEEEEEcccceEEEEecCCCCCeEEEEEe
Q psy4869 1289 ADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL---LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS 1365 (2435)
Q Consensus 1289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs---~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~s 1365 (2435)
....+.+++|+|+|++|++++ .++.|++||+.+++.+..+..|. .+.+++|+
T Consensus 198 ------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s 252 (391)
T 1l0q_A 198 ------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVT 252 (391)
T ss_dssp ------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEEC
T ss_pred ------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEc
Confidence 123567899999999999988 68999999999999988888765 47899999
Q ss_pred cCCCEE-EEEeCCCcEEEEeCCCCceEEEecccccceE---EEE------------EeeCC----------CEEEEEeCC
Q psy4869 1366 YDSTLI-ATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT---GVT------------FVPKT----------HYFFTTSKD 1419 (2435)
Q Consensus 1366 pdg~~L-~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~---~la------------f~P~~----------~~laSgg~D 1419 (2435)
|||++| ++++.|+.|++||+.+++++..+..|..+.. .+. |+.+. -.|.+.+.|
T Consensus 253 ~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~ 332 (391)
T 1l0q_A 253 PDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKD 332 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCC
Confidence 999977 6778999999999999999888876655421 122 22221 357777788
Q ss_pred CcEEEEECCCcee
Q psy4869 1420 GRVKQWDADNFER 1432 (2435)
Q Consensus 1420 g~V~lWd~~~~~~ 1432 (2435)
..+.+||+.+...
T Consensus 333 ~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 333 ATEWKWDFGDGSS 345 (391)
T ss_dssp CSEEEEECSSSCE
T ss_pred ceEEEEECCCCcc
Confidence 9999999986543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=282.69 Aligned_cols=282 Identities=11% Similarity=0.052 Sum_probs=233.8
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc---eeEEEec-------------------------------------
Q psy4869 1083 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD---CHKSLLA------------------------------------- 1122 (2435)
Q Consensus 1083 ~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~---~~~~l~~------------------------------------- 1122 (2435)
.++.+++|+++|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999966655 57899999999998 6655543
Q ss_pred -----------------cCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCC--CcceeEEEEEEEeecccccCeEEEEEeC
Q psy4869 1123 -----------------HEDSVTGVTFVPKTHYF-FTTSKDGRVKQWDAD--NFERIVTLHFFISLYGHKLPVLSLDMSY 1182 (2435)
Q Consensus 1123 -----------------h~~~V~~v~fsp~~~~l-~s~s~Dg~V~iwD~~--~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 1182 (2435)
|...|.+++|+|++++| ++++.|+.|++||+. ++.....+. ...+...|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK----RFCFSKRPNAISIAE 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE----EEECSSCEEEEEECT
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee----cccCCCCceEEEEcC
Confidence 23369999999999986 888899999999998 776665543 135678999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceee----EeeccCCCEEEEEEeeC---CCEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1183 DSTLIATGSGDRTVKVWGLDYGDCHK----SLLAHEDSVTGVTFVPK---THYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1183 dg~~l~sgs~Dg~V~iwd~~t~~~~~----~~~~h~~~V~~i~~spd---~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
++.+|++|+.||.|++|++.+++... .+.+|...|.+++|+|+ +++|++++.|+.|++||+++.+.+..+
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--- 236 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW--- 236 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE---
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee---
Confidence 99999999999999999999887554 77889999999999999 999999999999999998765543321
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD 1335 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d 1335 (2435)
...+...+.+++|+ ++++|++|+.|
T Consensus 237 ------------------------------------------------------~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 237 ------------------------------------------------------LFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp ------------------------------------------------------CCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred ------------------------------------------------------ecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 01234678999999 99999999999
Q ss_pred CeEEEEEcccceEEEEecC-------------------------CCCCeEEEEEecCCCEEEEEe-CCCcEEEEeC--CC
Q psy4869 1336 TTVKIFFLDTFKFFISLYG-------------------------HKLPVLSLDMSYDSTLIATGS-GDRTVKVWGL--DY 1387 (2435)
Q Consensus 1336 G~V~v~d~~~~k~i~~~~~-------------------------h~~~V~~la~spdg~~L~sGg-~Dg~V~iwdl--~~ 1387 (2435)
|.|+|||+.+++.+..+.. ....|..++|+|++++|++++ .|+.|++|++ ..
T Consensus 262 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~ 341 (450)
T 2vdu_B 262 DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ 341 (450)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSS
T ss_pred CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC
Confidence 9999999999998888763 235699999999999999999 8999999999 66
Q ss_pred C---ceEEEecccccceEEEEEeeCCCEEEEEeC-------CCcEEEEECCC
Q psy4869 1388 G---DCHKSLLAHEDSVTGVTFVPKTHYFFTTSK-------DGRVKQWDADN 1429 (2435)
Q Consensus 1388 g---k~~~~~~~h~~~V~~laf~P~~~~laSgg~-------Dg~V~lWd~~~ 1429 (2435)
+ +++..+..| ..|.+++|+|+ .++++++. +..|.+|.++.
T Consensus 342 ~~~l~~~~~~~~~-~~v~~~~~~~~-~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 342 KGDLALKQIITFP-YNVISLSAHND-EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp TTCEEEEEEEECS-SCEEEEEEETT-EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CCceeeccEeccC-CceEEEEecCC-cEEEEEecccCCCCCCcceEEEEEEc
Confidence 6 667777788 88999999995 45655543 55689998764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=288.93 Aligned_cols=267 Identities=19% Similarity=0.358 Sum_probs=220.6
Q ss_pred EEEEECCCCCe-EEEecCCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEEccC----------CeeEEEEecCCCcEEEEE
Q psy4869 99 LKTFSLDTTDV-ISTFTGHKSAITVIQYDPL-GHRLATGSKDTDIVLWDVVA----------ECGLHRLSGHKGVITDIR 166 (2435)
Q Consensus 99 i~i~d~~~~~~-~~~l~gH~~~V~~l~f~p~-g~~laSgs~Dg~I~iWd~~~----------~~~~~~l~gH~~~V~~v~ 166 (2435)
+..|...+++. +....+|.+.|++++|+|+ +.+||+|+.||.|+|||+.. ...+..+.+|.+.|++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 188 (430)
T 2xyi_A 109 FGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS 188 (430)
T ss_dssp ---------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEE
T ss_pred cccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEE
Confidence 33343333433 2456679999999999997 68999999999999999987 567888999999999999
Q ss_pred EeecCCCcEEEEEeCCCcEEEEeccCCcc-------ccccccccceEEEEEEEe-CCCeEEEeeCCCcEEEEEcCCCCCc
Q psy4869 167 FMSQPGHHFVVSSAKDTFVKIWDADTGDC-------FKTMAAHLTEVWGVCVMR-EDSYLISGSNDAELKVWNVRDRSDI 238 (2435)
Q Consensus 167 ~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~-------~~~~~~h~~~V~~l~~~p-~~~~l~s~s~Dg~v~vwdl~~~~~~ 238 (2435)
|+|.. ..+|++|+.||.|++||++++.. ...+.+|...|.+++|+| ++.+|++++.|+.|++||++.....
T Consensus 189 ~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 189 WNPNL-NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 267 (430)
T ss_dssp ECTTS-TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred eCCCC-CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence 98643 23899999999999999988543 345678999999999999 6778889999999999999853100
Q ss_pred cccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhh
Q psy4869 239 DTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTR 318 (2435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (2435)
T Consensus 268 -------------------------------------------------------------------------------- 267 (430)
T 2xyi_A 268 -------------------------------------------------------------------------------- 267 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCC-EEEEEeCCCeEEEEecCCceee
Q psy4869 319 SMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECEN 397 (2435)
Q Consensus 319 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~ 397 (2435)
.+...+.+|...|++++|+|++. +|++|+.||.|++||++.....
T Consensus 268 ----------------------------------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~ 313 (430)
T 2xyi_A 268 ----------------------------------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313 (430)
T ss_dssp ----------------------------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred ----------------------------------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC
Confidence 01123457889999999999987 7999999999999999875566
Q ss_pred EEEeeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCC--------------CceEEEEeccCccccccCcccCCCeE
Q psy4869 398 IGVMSGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEK--------------GQRIKKMKGHSTFVNSCDPVRRGQLL 462 (2435)
Q Consensus 398 ~~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~t--------------g~~v~~l~~h~~~v~sv~~~~~~~~l 462 (2435)
+..+..|...|.+++|+|+++ +|++++.|+.|++||+.. .+.+..+.+|...|.++.|+|+++.+
T Consensus 314 ~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 393 (430)
T 2xyi_A 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 393 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTE
T ss_pred eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCE
Confidence 778889999999999999885 689999999999999986 36778888999999999999999889
Q ss_pred EEEEeCCCeEEEEeCCCC
Q psy4869 463 IASGSDDCTVKVWDPRKK 480 (2435)
Q Consensus 463 lasgs~Dg~I~vwD~~~~ 480 (2435)
+++++.|+.|++|++...
T Consensus 394 l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 394 ICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEETTSEEEEEEECHH
T ss_pred EEEEECCCCEEEeEcccc
Confidence 999999999999998643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=260.80 Aligned_cols=281 Identities=15% Similarity=0.150 Sum_probs=202.9
Q ss_pred CEEEEEEcCCCC---EEEEEeCCCCEEEEEccCC---eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccC
Q psy4869 119 AITVIQYDPLGH---RLATGSKDTDIVLWDVVAE---CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADT 192 (2435)
Q Consensus 119 ~V~~l~f~p~g~---~laSgs~Dg~I~iWd~~~~---~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~t 192 (2435)
.+.++.|-..|- -+++++ ...|++|+.... ++++++.+|..+|..|.+.|+..+.+.++-
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------- 106 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL------------- 106 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-------------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-------------
Confidence 456777766553 466665 456999999988 789999999999999999986655433221
Q ss_pred CccccccccccceEEEEEEEeC----CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEE
Q psy4869 193 GDCFKTMAAHLTEVWGVCVMRE----DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIE 268 (2435)
Q Consensus 193 g~~~~~~~~h~~~V~~l~~~p~----~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 268 (2435)
| .-|...|+.++++|+ +.++++++.+ +++|++.+++.+
T Consensus 107 ~------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv------------------------------ 148 (356)
T 2w18_A 107 G------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLV------------------------------ 148 (356)
T ss_dssp C------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEE------------------------------
T ss_pred c------cccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEE------------------------------
Confidence 1 245678999999999 8888887754 667765422100
Q ss_pred EEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCc
Q psy4869 269 VQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRT 348 (2435)
Q Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~ 348 (2435)
T Consensus 149 -------------------------------------------------------------------------------- 148 (356)
T 2w18_A 149 -------------------------------------------------------------------------------- 148 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEcc---CCCEEEEEeC
Q psy4869 349 SNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST---DGCHIFTCST 425 (2435)
Q Consensus 349 ~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~---dg~~L~s~s~ 425 (2435)
.....+|.+.|..++|+|+|+.++ .+.+|...+..++|++ ++.+|++++.
T Consensus 149 ------~ss~~g~d~~V~~~~~s~dG~~~~---------------------s~~~~~~~v~~l~fs~~~g~~~~LaSgS~ 201 (356)
T 2w18_A 149 ------SSSGTLSDQQVEVMTFAEDGGGKE---------------------NQFLMPPEETILTFAEVQGMQEALLGTTI 201 (356)
T ss_dssp ------EEESSSTTCEEEEEEECTTSCEEE---------------------EEEECCCSSCEEEEEEEETSTTEEEEEET
T ss_pred ------EecccCCCCcEEEEEECCCCceee---------------------eeccCCCceeeEEeeccCCCCceEEEecC
Confidence 000124555555555555554443 4557888899999998 7799999999
Q ss_pred CCeEEEEECCCCceEEEEeccCc---cccccCcccCCCeE-----------EEEEeCCCeEEEEeCCCCcceEee-----
Q psy4869 426 DQTLAVWDLEKGQRIKKMKGHST---FVNSCDPVRRGQLL-----------IASGSDDCTVKVWDPRKKNQAVSM----- 486 (2435)
Q Consensus 426 Dg~I~vwd~~tg~~v~~l~~h~~---~v~sv~~~~~~~~l-----------lasgs~Dg~I~vwD~~~~~~~~~~----- 486 (2435)
|++|+|||+.+|+.++.+.+|.. .+.+++|+|++..+ +++|+.|++|++||..+++.+..+
T Consensus 202 D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p 281 (356)
T 2w18_A 202 MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLP 281 (356)
T ss_dssp TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCC
T ss_pred CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeecc
Confidence 99999999999999999987654 44455789987554 478899999999999998876543
Q ss_pred -cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEE-EEEEcCCCCEEEEEECCCcEEEEEc
Q psy4869 487 -NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVT-GLSLSPDGSYILSNAMDNTVRIWDI 560 (2435)
Q Consensus 487 -~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~-~i~~spdg~~las~s~Dg~I~lWdl 560 (2435)
.+...+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|.+.+. +++|+|||++|++|+.|++|||||+
T Consensus 282 ~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 282 PGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 12223333333 377899999999999999999999999999988655 6899999999999999999999996
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=273.08 Aligned_cols=284 Identities=13% Similarity=0.085 Sum_probs=220.8
Q ss_pred ecCCCCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEE-EEeCCCeEEEEEccCCce
Q psy4869 881 AQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL-VGTKDGRLLIVDIGAGEI 959 (2435)
Q Consensus 881 l~GH~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~La-vg~~dg~V~vwd~~sg~~ 959 (2435)
..+|...|.|++|+|||++||+|.++.++|||+.+++........ .+..+++.+++++++ +|+.|+.|.|||+.+++.
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 467999999999999999999999988999999988777665543 355678889888885 577889999999999998
Q ss_pred eecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccc-cccccccccccccccccceeeeeeccccc
Q psy4869 960 LEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELV-SVNREADEETKDVSRSHKVLSLLHTRTLK 1038 (2435)
Q Consensus 960 v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1038 (2435)
+..+. |...|.+++|+++. ++.+ .|+.|++|++... .... . +.
T Consensus 94 ~~~~~-~~~~v~~v~~~~~~------------~~~~-~~~~i~i~d~~~~~~~~~-----------------~-----~~ 137 (355)
T 3vu4_A 94 VSRIK-VDAPVKDLFLSREF------------IVVS-YGDVISVFKFGNPWKRIT-----------------D-----DI 137 (355)
T ss_dssp EEEEE-CSSCEEEEEECSSE------------EEEE-ETTEEEEEESSTTCCBSS-----------------C-----CE
T ss_pred EEEEE-CCCceEEEEEcCCE------------EEEE-EcCEEEEEECCCCceeeE-----------------E-----ec
Confidence 88876 56699999998763 4433 4799999998643 1100 0 00
Q ss_pred cCCCEEEEEEcCCCCEEEE--EECCCcEEEEEcCCCe----------------EEEEEecCCcCEEEEEEcCCCCEEEEE
Q psy4869 1039 LEEQVLCARVSPDSKLLAV--SLLDTTVKIFFLDTFK----------------FFISLYGHKLPVLSLDMSYDSTLIATG 1100 (2435)
Q Consensus 1039 ~~~~v~~l~~spdg~~Lav--g~~dg~V~i~d~~~~~----------------~~~~l~~h~~~V~sl~~spdg~~L~Sg 1100 (2435)
. ....+++++ .++++ |..+|.|++||+.+++ .+..+.+|...|.+++|+|++++|++|
T Consensus 138 ~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 138 R--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp E--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred c--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 1 233456666 66776 4778999999998765 267789999999999999999999999
Q ss_pred ECCCc-EEEEEccCCceeEEEe-c-cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEE--------------
Q psy4869 1101 SGDRT-VKVWGLDYGDCHKSLL-A-HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH-------------- 1163 (2435)
Q Consensus 1101 s~Dg~-I~vWd~~t~~~~~~l~-~-h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~-------------- 1163 (2435)
+.|++ |++||+++++++..+. + |...|.+++|+|++++|++++.|+.|++||++.........
T Consensus 214 s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp ETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 99998 9999999999999998 5 99999999999999999999999999999997653211100
Q ss_pred ---EEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc
Q psy4869 1164 ---FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1205 (2435)
Q Consensus 1164 ---~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~ 1205 (2435)
..............++|+++++.|++++.||.+++|++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 000001122234678999999999999999999999987543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=280.97 Aligned_cols=269 Identities=9% Similarity=0.032 Sum_probs=211.0
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC---------CCce
Q psy4869 369 KYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE---------KGQR 439 (2435)
Q Consensus 369 ~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~---------tg~~ 439 (2435)
.+.+++.+|++|+.||.|++||+..+... ..+. ...|..+.|+|+ +++++.|+.|++|+.. +++.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI-TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCE-EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEE-EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 34457889999999999999999765332 2232 467888888887 9999999999999655 5555
Q ss_pred EEEEe-ccCccccccCccc--CCCeEEEEEeCCCeEEEEeCCCCcceEee--cCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 440 IKKMK-GHSTFVNSCDPVR--RGQLLIASGSDDCTVKVWDPRKKNQAVSM--NNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 440 v~~l~-~h~~~v~sv~~~~--~~~~llasgs~Dg~I~vwD~~~~~~~~~~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
+..+. +|...|.++.|+| ++ .++++++.|+.|++||+++++..... .+...+.+++|+|+|.+|++|+.||.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 55554 6778899999999 65 67889999999999999998886555 3455799999999999999999999999
Q ss_pred EEECCCCcEE-EEEec-CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCC
Q psy4869 515 MWDLRTNSVV-QKLRG-HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592 (2435)
Q Consensus 515 lwD~~s~~~v-~~l~~-h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spd 592 (2435)
+||+++++.+ ..+.+ |.+.|++|+|+|+|.+|++++ |++|++||++..... ..+..+..|...... .+++|+|+
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~ 271 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT-LAYPTYTIPEFKTGT--VTYDIDDS 271 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC-BSSCCCBC-----CC--EEEEECTT
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc-eeecccccccccccc--eEEEECCC
Confidence 9999999987 88888 999999999999999999999 559999999853211 111112122211111 46999999
Q ss_pred CCEEEEecC-CCeEEEEECCCCcEEEEecCCCCCeeEEEEcC---CCCEEEEEECCCcEEEecC
Q psy4869 593 GLYVTAGSA-DKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHP---KEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 593 g~~Lasgs~-Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fsp---d~~~Lasgs~Dg~I~vWd~ 652 (2435)
|++|++++. |+.|+||++......... .++..++|.+ +...|++++.||.++++-.
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 999999998 999999999765443332 5678899998 8889999999999987643
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=279.71 Aligned_cols=338 Identities=13% Similarity=0.062 Sum_probs=217.6
Q ss_pred cccCCCEEEEEEcC---CC-CEEEEEECCCcEEEEEcCCC-------eEEE--EEecCCcCEEEEEEcCCCCEEEEEECC
Q psy4869 1037 LKLEEQVLCARVSP---DS-KLLAVSLLDTTVKIFFLDTF-------KFFI--SLYGHKLPVLSLDMSYDSTLIATGSGD 1103 (2435)
Q Consensus 1037 ~~~~~~v~~l~~sp---dg-~~Lavg~~dg~V~i~d~~~~-------~~~~--~l~~h~~~V~sl~~spdg~~L~Sgs~D 1103 (2435)
+.......++.|.. ++ .++++|. ++.|.+|+.... .... ....+..++..+.|++...
T Consensus 12 lpl~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 82 (393)
T 4gq1_A 12 LPLNVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCS-------- 82 (393)
T ss_dssp CCTTCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCE--------
T ss_pred ecCCCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCcc--------
Confidence 34456667777743 33 4666665 788999975311 1111 1122444555555543221
Q ss_pred CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeC-
Q psy4869 1104 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY- 1182 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~- 1182 (2435)
.....|...+....+.+++.+|++++.|++|++||.+.+..... .....+.+|...|++++|+|
T Consensus 83 --------------~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~-~~~~~~~gH~~~v~~v~~~p~ 147 (393)
T 4gq1_A 83 --------------YSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ-HVLGGKSGHHNFVNDIDIADV 147 (393)
T ss_dssp --------------EECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEE-EEECTTTSCSSCEEEEEEEEE
T ss_pred --------------ccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee-eeecccCCCCCceEEEEEccc
Confidence 11122444445556677888999999999999999988755432 23345678999999999997
Q ss_pred -------CCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCC-CEEEEEECCCcEEEEECCCCceEEEEee
Q psy4869 1183 -------DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT-HYFFTTSKDGRVKQWDADNFERIVTLHF 1254 (2435)
Q Consensus 1183 -------dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~-~~lvsgs~Dg~I~vwD~~~~~~v~~~~~ 1254 (2435)
++++|++|+.|++|+|||++++..+..+..|...|.+++|+|++ ++|++++.|+.|++||++..+.......
T Consensus 148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred cccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence 78999999999999999999988888888999999999999976 5799999999999999998766544322
Q ss_pred CCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEec-CCcceeEEee
Q psy4869 1255 NPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS-PDSKLLAVSL 1333 (2435)
Q Consensus 1255 ~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~s-pdg~~lavgs 1333 (2435)
...... +..+. ++..... .......+...+.++.|+ |||+.+++++
T Consensus 228 ~~~~~~-----------~~~~s-~~~~~~~---------------------~~~~~~~~~~~v~~v~~~~~dg~~l~s~s 274 (393)
T 4gq1_A 228 TELVKN-----------PWLLT-LNTLPLV---------------------NTCHSSGIASSLANVRWIGSDGSGILAMC 274 (393)
T ss_dssp ---CSC-----------CCSEE-EESGGGC---------------------------CCSSSCSEEEEETTTTCEEEEEC
T ss_pred cCCccc-----------ceEEe-cccccce---------------------eeeecccccccceeeeeecCCCCEEEEEe
Confidence 111000 00000 0000000 000112345567788876 8999999999
Q ss_pred cCCeEEEEEcccceEEEEecCCCCCeEEEEEec--------------------CCCEEEEEeCCCcEEEEeCCCCceEEE
Q psy4869 1334 LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY--------------------DSTLIATGSGDRTVKVWGLDYGDCHKS 1393 (2435)
Q Consensus 1334 ~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~sp--------------------dg~~L~sGg~Dg~V~iwdl~~gk~~~~ 1393 (2435)
.|+.+++||+..++....+..|...+..+.+.| ++.++++|+.||.|++||+.+++++..
T Consensus 275 ~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~ 354 (393)
T 4gq1_A 275 KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI 354 (393)
T ss_dssp TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 999999999988777766666665555444433 445788899999999999999999988
Q ss_pred ecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCcee
Q psy4869 1394 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1432 (2435)
Q Consensus 1394 ~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~ 1432 (2435)
...|..+|++|+|+|+|++||+++.|| +.+|.+..+.+
T Consensus 355 ~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~gf~~ 392 (393)
T 4gq1_A 355 PIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMGFTR 392 (393)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGGGCC
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeCccc
Confidence 889999999999999999999998665 77777765544
|
| >2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-26 Score=288.83 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=80.6
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
..|..|+++. ...++||||||.||+|| |||+++++|+.++++.
T Consensus 47 ~~~~~F~~~~-----~~~~tpVknQg~cGsCW--------------------------------aFs~~~~le~~~~~k~ 89 (453)
T 2cb5_A 47 RAQHVFQHAV-----PQEGKPITNQKSSGRSW--------------------------------IFSCLNVMRLPFMKKL 89 (453)
T ss_dssp HCCCCCSEEC-----SCCCSSCCBCCBSSCHH--------------------------------HHHHHHHHHHHHHHHT
T ss_pred cCCCceeeee-----ccCCCCcccCCCccchH--------------------------------hhhhHHHHHHHHHHHh
Confidence 3577899988 66799999999999999 9999999999999984
Q ss_pred -CCCcCccCCc----------------cceecccCCCCCCC--C-------CCCCCCCCCCChhhHHHHHHHcCccCCCc
Q psy4869 2253 -KGQVKPILSP----------------QHLICSCTNCTRMH--T-------KTPMSMCMGGDSAAAWMYWINAGLVDGGD 2306 (2435)
Q Consensus 2253 -~~~~~~~lS~----------------q~l~~~~~~c~~~~--~-------~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~ 2306 (2435)
+..+. ||+ |+|+ ||.... . -+++.||+||+...|++|++++|++.+.+
T Consensus 90 ~~~~~~--lSe~yl~fwDKlEkan~flq~li----dc~~~~~~~d~R~v~~l~~~~gcdGG~~~~a~~~i~kyGl~p~~~ 163 (453)
T 2cb5_A 90 NIEEFE--FSQSYLFFWDKVERCYFFLSAFV----DTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKC 163 (453)
T ss_dssp TCSCCC--BCHHHHHHHHHHHHHHHHHHHHH----HHHHTTCCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGG
T ss_pred cCCeEe--eChHHHHHHHHHHHhhHHHHHHH----HHHhccCCcchhhHHHhcCCCCCCCCChHHHHHHHHHcCccchhh
Confidence 55555 999 9999 775310 0 02357899999999999999999999999
Q ss_pred ccCCC
Q psy4869 2307 YGTHD 2311 (2435)
Q Consensus 2307 y~~~~ 2311 (2435)
|||..
T Consensus 164 yP~~~ 168 (453)
T 2cb5_A 164 FPESY 168 (453)
T ss_dssp SCCCT
T ss_pred ccccc
Confidence 99965
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=275.11 Aligned_cols=272 Identities=13% Similarity=0.108 Sum_probs=212.5
Q ss_pred CCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcc
Q psy4869 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLN 251 (2435)
Q Consensus 172 ~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~ 251 (2435)
++.+|++|+.||+|++||+++++.+..+. ...|.++.++|. +++++.|++|++|+.+..
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~---------------- 105 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ---------------- 105 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTE----------------
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCc----------------
Confidence 45689999999999999999999887776 467788888887 999999999999997631
Q ss_pred eeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEe
Q psy4869 252 QLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYD 331 (2435)
Q Consensus 252 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d 331 (2435)
+.+|+
T Consensus 106 ---------------------------------------------------------------------------~~~~~ 110 (343)
T 3lrv_A 106 ---------------------------------------------------------------------------ITILD 110 (343)
T ss_dssp ---------------------------------------------------------------------------EEEEE
T ss_pred ---------------------------------------------------------------------------eEEee
Confidence 01122
Q ss_pred CccceeeeeecccccCccccccceeEecccCCcEEEEEECC--CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCee
Q psy4869 332 REKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHP--DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVM 409 (2435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fsp--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~ 409 (2435)
....... .....+|.+.|.+++|+| ++++|++|+.||.|++||+............|...|.
T Consensus 111 ~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~ 174 (343)
T 3lrv_A 111 SKTNKVL----------------REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS 174 (343)
T ss_dssp TTTCCEE----------------EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC
T ss_pred cCCccee----------------EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE
Confidence 1111000 012236788999999999 9999999999999999999876543222245667899
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCceE-EEEec-cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec
Q psy4869 410 DLKFSTDGCHIFTCSTDQTLAVWDLEKGQRI-KKMKG-HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN 487 (2435)
Q Consensus 410 ~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v-~~l~~-h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~ 487 (2435)
+++|+|++.+|++|+.||.|++||+++++.+ ..+.+ |...|.+++|+|++. +|+++++ +.|++||+++++....+.
T Consensus 175 ~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~~-~~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 175 SGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVECD-QTVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEES-SBEEEEETTSSTTCBSSC
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEeC-CeEEEEEcCCCCcceeec
Confidence 9999999999999999999999999999887 78888 999999999999874 5667774 499999999887765442
Q ss_pred ----CcccE--EEEEECCCCCEEEEEec-CCeEEEEECCCCcEEEEEecCCCCEEEEEEcC---CCCEEEEEECCCcEEE
Q psy4869 488 ----NTYQV--TSVAFNDTAECVLTGGI-DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP---DGSYILSNAMDNTVRI 557 (2435)
Q Consensus 488 ----~~~~v--~sv~~sp~g~~l~sgs~-dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~sp---dg~~las~s~Dg~I~l 557 (2435)
+...+ .+++|+|+|++|++++. |+.|++|++......... .++..+.|.+ +++.+++++.|+.+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 253 TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEE
Confidence 22333 46999999999999998 999999999765433222 5678889998 8999999999999998
Q ss_pred EEcC
Q psy4869 558 WDIR 561 (2435)
Q Consensus 558 Wdl~ 561 (2435)
+-..
T Consensus 329 ~~~~ 332 (343)
T 3lrv_A 329 ILKT 332 (343)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7644
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-23 Score=251.59 Aligned_cols=281 Identities=13% Similarity=0.109 Sum_probs=210.4
Q ss_pred CEEEEEEcCCCC---EEEEEECCCcEEEEEcCCC---eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc
Q psy4869 1042 QVLCARVSPDSK---LLAVSLLDTTVKIFFLDTF---KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1115 (2435)
Q Consensus 1042 ~v~~l~~spdg~---~Lavg~~dg~V~i~d~~~~---~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~ 1115 (2435)
.+.++.|-..|- -+++++ ...|++|+..+. +.+.++.+|+.+|..|.+.||..-|+... +=+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~----- 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA------LGN----- 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE------ECS-----
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee------ecc-----
Confidence 466677766553 555666 678999998877 89999999999999999999864444211 111
Q ss_pred eeEEEeccCCCEEEEEEccC----CCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe
Q psy4869 1116 CHKSLLAHEDSVTGVTFVPK----THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191 (2435)
Q Consensus 1116 ~~~~l~~h~~~V~~v~fsp~----~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 1191 (2435)
-+...|..++|+|+ +..+++++.+ +++|++. +++++.+++
T Consensus 109 ------~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----------------------------~g~lv~ss~ 152 (356)
T 2w18_A 109 ------LEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----------------------------KRRLVSSSG 152 (356)
T ss_dssp ------SSEEEEEEECC------CCEEEEEEEEE--EEEEEET----------------------------TTEEEEEES
T ss_pred ------ccccceEEEEECCCccccccEEEeCCCe--EEEEecC----------------------------CCcEEEecc
Confidence 13446889999999 8888887743 5666532 344455533
Q ss_pred --CCCcEEEEEc-cCCceeeEeeccCCCEEEEEEee---CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceE
Q psy4869 1192 --GDRTVKVWGL-DYGDCHKSLLAHEDSVTGVTFVP---KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQ 1265 (2435)
Q Consensus 1192 --~Dg~V~iwd~-~t~~~~~~~~~h~~~V~~i~~sp---d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~ 1265 (2435)
.|+.|++|++ ..|+.+..+..|...++.++|++ ++..|++++.|++|++||+++++.+..+..+...
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~------- 225 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY------- 225 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-------
Confidence 6899999999 55888888889999999999999 7799999999999999999999887766421110
Q ss_pred EEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCccee------------EEee
Q psy4869 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL------------AVSL 1333 (2435)
Q Consensus 1266 lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~l------------avgs 1333 (2435)
-..+.+++|+|||..+ +.|+
T Consensus 226 ------------------------------------------------v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 226 ------------------------------------------------QASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp -------------------------------------------------CCCEEEEEEETTEEEEEEC------------
T ss_pred ------------------------------------------------eeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 1235566777777765 5688
Q ss_pred cCCeEEEEEcccceEEEEe-----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceE-EEEEe
Q psy4869 1334 LDTTVKIFFLDTFKFFISL-----YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT-GVTFV 1407 (2435)
Q Consensus 1334 ~dG~V~v~d~~~~k~i~~~-----~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~-~laf~ 1407 (2435)
.|+.+++||..+++.+..+ .+|.+.+.+.+++ +.++++|+.|+.|+|||+.+|+++..+.+|...|. .++|+
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence 9999999999999887665 3676666555444 88999999999999999999999999999987655 68999
Q ss_pred eCCCEEEEEeCCCcEEEEEC
Q psy4869 1408 PKTHYFFTTSKDGRVKQWDA 1427 (2435)
Q Consensus 1408 P~~~~laSgg~Dg~V~lWd~ 1427 (2435)
|++.+|+||+.|+.|+|||+
T Consensus 336 PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSSEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEECCCcEEEecC
Confidence 99999999999999999996
|
| >2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-25 Score=278.58 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=66.9
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhh-
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQ- 2251 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~- 2251 (2435)
..|..|+|+. .+.++||||||.||+|| |||+++++|+.++++
T Consensus 52 ~~~~~F~~~~-----~~~vtpVknQg~cGsCW--------------------------------aFs~~~~lE~~~~~~~ 94 (457)
T 2e01_A 52 QDNRVFNTVV-----STDSTPVTNQKSSGRCW--------------------------------LFAATNQLRLNVLSEL 94 (457)
T ss_dssp HCCCCCSEEC-----C------------CCHH--------------------------------HHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEe-----cCCccCcccCCCCccch--------------------------------hHHhHHHHHHHHHHHh
Confidence 4677888887 66799999999999999 999999999999998
Q ss_pred cCCCcCccCCc----------------cceecccCCCCCCCCC-------CCCCCCCCCChhhHHHHHHHcCccCCCccc
Q psy4869 2252 SKGQVKPILSP----------------QHLICSCTNCTRMHTK-------TPMSMCMGGDSAAAWMYWINAGLVDGGDYG 2308 (2435)
Q Consensus 2252 ~~~~~~~~lS~----------------q~l~~~~~~c~~~~~~-------~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~ 2308 (2435)
++..+. ||+ |+|+ ||...... ..+.||+||....+++|++++||+.+++||
T Consensus 95 ~~~~~~--LSe~yl~~~dklEkan~flq~lv----dc~~~~~~~r~v~~l~~~~gcdGG~~~~a~~~i~kyGivpe~~yP 168 (457)
T 2e01_A 95 NLKEFE--LSQAYLFFYDKLEKANYFLDQIV----SSADQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDLYG 168 (457)
T ss_dssp TCSSCC--BCHHHHHHHHHHHHHHHHHHHHH----HTTTSCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGSC
T ss_pred CCCcee--eCChhhhhhhHHHHHHHHHHHHH----HhcCCcccchhhhhhccCCCCCCCCHHHHHHHHHHcCccchhhcC
Confidence 655555 999 6777 66531000 035789999999999999999999999999
Q ss_pred C
Q psy4869 2309 T 2309 (2435)
Q Consensus 2309 ~ 2309 (2435)
|
T Consensus 169 ~ 169 (457)
T 2e01_A 169 D 169 (457)
T ss_dssp S
T ss_pred C
Confidence 9
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-22 Score=266.69 Aligned_cols=333 Identities=12% Similarity=0.035 Sum_probs=266.0
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEc--cCCceeEEEeccC
Q psy4869 1047 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL--DYGDCHKSLLAHE 1124 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~--~t~~~~~~l~~h~ 1124 (2435)
+|+|++.+++++..++.|.+||..+++++..+..+.. +..++|+|||++|++++.|+.|++||+ .+++++..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4788998888888899999999999999999984333 899999999999999999999999999 8888888887 45
Q ss_pred CCEEEEEEcc----CCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEee-c----ccccCeEEEEEeCCCCE-EEEEeCC
Q psy4869 1125 DSVTGVTFVP----KTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISL-Y----GHKLPVLSLDMSYDSTL-IATGSGD 1193 (2435)
Q Consensus 1125 ~~V~~v~fsp----~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~-~----~h~~~V~~l~~s~dg~~-l~sgs~D 1193 (2435)
..+..++|+| +++++++++ .++.|.+||..+.+.+..+...... . .....+..+.+++++.. +++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 5689999999 999999888 4899999999998887766421100 0 12337899999997665 4556678
Q ss_pred CcEEEEEccCCceee--EeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEE
Q psy4869 1194 RTVKVWGLDYGDCHK--SLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1194 g~V~iwd~~t~~~~~--~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~ 1270 (2435)
+.|.+||+.+++.+. .+ .+...+.++.|+|++++|++++ .+++|.+||..+.+.+..+.....
T Consensus 302 g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~------------- 367 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT------------- 367 (543)
T ss_dssp TEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-------------
T ss_pred CeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC-------------
Confidence 999999998876544 33 4667788999999999887766 589999999998766554432110
Q ss_pred CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCC-cceeEEee-cCCeEEEEEccc---
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD-SKLLAVSL-LDTTVKIFFLDT--- 1345 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spd-g~~lavgs-~dG~V~v~d~~~--- 1345 (2435)
++.+....+ ++|+ |..++++. .++.|.|||.++
T Consensus 368 -----------------------------------------ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 368 -----------------------------------------PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp -----------------------------------------BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred -----------------------------------------CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 011111122 3576 66677765 589999999998
Q ss_pred ----ceEEEEecCCCCCeEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCceE-EEe--------cccccceEEEE
Q psy4869 1346 ----FKFFISLYGHKLPVLSLDMSYDSTLIATGS-------GDRTVKVWGLDYGDCH-KSL--------LAHEDSVTGVT 1405 (2435)
Q Consensus 1346 ----~k~i~~~~~h~~~V~~la~spdg~~L~sGg-------~Dg~V~iwdl~~gk~~-~~~--------~~h~~~V~~la 1405 (2435)
++++..+.+|.+.+..++++|||++|+++. .++.|.+||+.++++. ..+ ..|...|..++
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 485 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 485 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence 899999999999999999999999999987 3789999999999877 443 35677899999
Q ss_pred EeeCCCEEEEEe-----CCCcEEEEECCCceeEEEEe
Q psy4869 1406 FVPKTHYFFTTS-----KDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1406 f~P~~~~laSgg-----~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
|+|+|..+..+. .|+.|.|||..+.++++.++
T Consensus 486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 999998777542 47999999999999998876
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=267.35 Aligned_cols=337 Identities=11% Similarity=0.068 Sum_probs=257.1
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEec--cCCcccccccc
Q psy4869 124 QYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDA--DTGDCFKTMAA 201 (2435)
Q Consensus 124 ~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~--~tg~~~~~~~~ 201 (2435)
+|+|++.++++++.|++|.+||..+++.+.++..+.. +..++|+| ++++|++++.|++|++||+ .+++++.++..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence 3889999999999999999999999999999883333 89999975 5678999999999999999 89998888874
Q ss_pred ccceEEEEEEEe----CCCeEEEee-CCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccc
Q psy4869 202 HLTEVWGVCVMR----EDSYLISGS-NDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELK 276 (2435)
Q Consensus 202 h~~~V~~l~~~p----~~~~l~s~s-~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 276 (2435)
...+..++|+| +|+++++++ .|++|.+||..+.+.+..+ .
T Consensus 221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i--------------------------~-------- 265 (543)
T 1nir_A 221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV--------------------------S-------- 265 (543)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE--------------------------E--------
T ss_pred -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee--------------------------c--------
Confidence 45679999999 999999888 4899999998754321100 0
Q ss_pred cccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCcccccccee
Q psy4869 277 NLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIM 356 (2435)
Q Consensus 277 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~ 356 (2435)
.. . ... +
T Consensus 266 ---~~---------------g--~~~----------------------------~------------------------- 272 (543)
T 1nir_A 266 ---TR---------------G--MTV----------------------------D------------------------- 272 (543)
T ss_dssp ---CC---------------E--ECS----------------------------S-------------------------
T ss_pred ---cc---------------C--ccc----------------------------C-------------------------
Confidence 00 0 000 0
Q ss_pred EecccC-CcEEEEEECCCCC-EEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEE
Q psy4869 357 LLEGHG-GEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWD 433 (2435)
Q Consensus 357 ~l~gH~-~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd 433 (2435)
...-|. ..+..+.++|++. ++++...++.|.+||.............+...+.+++|+|||++|++++ .++.|.+||
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 000122 3678899999765 4666778899999998754322212223667889999999999877665 588999999
Q ss_pred CCCCceEEEEec----cCccccccCcccCCCeEEEEEe-CCCeEEEEeCCC-------CcceEeec-CcccEEEEEECCC
Q psy4869 434 LEKGQRIKKMKG----HSTFVNSCDPVRRGQLLIASGS-DDCTVKVWDPRK-------KNQAVSMN-NTYQVTSVAFNDT 500 (2435)
Q Consensus 434 ~~tg~~v~~l~~----h~~~v~sv~~~~~~~~llasgs-~Dg~I~vwD~~~-------~~~~~~~~-~~~~v~sv~~sp~ 500 (2435)
..+++.+..+.. |......+ +.|++..+++++. .|++|.+||+.+ .+.+..+. +...+..++|+|+
T Consensus 353 ~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pd 431 (543)
T 1nir_A 353 SKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK 431 (543)
T ss_dssp TTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred CCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCC
Confidence 999999888874 43322222 3566567777776 689999999988 67777775 4456788999999
Q ss_pred CCEEEEEe-------cCCeEEEEECCCCcEE-EEE--------ecCCCCEEEEEEcCCCCEEEEEE-----CCCcEEEEE
Q psy4869 501 AECVLTGG-------IDNDIKMWDLRTNSVV-QKL--------RGHSDTVTGLSLSPDGSYILSNA-----MDNTVRIWD 559 (2435)
Q Consensus 501 g~~l~sgs-------~dg~V~lwD~~s~~~v-~~l--------~~h~~~V~~i~~spdg~~las~s-----~Dg~I~lWd 559 (2435)
+++|++++ .++.|.+||+.+++.. ..+ ..|...+..+.|+|||+.++.+. .|+.|.|||
T Consensus 432 g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 432 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 99999987 3789999999998876 444 35678899999999999999763 479999999
Q ss_pred cCCCCCCCceEEEEeCc
Q psy4869 560 IRPYVPGERCVKVMSGH 576 (2435)
Q Consensus 560 l~~~~~~~~~v~~~~~h 576 (2435)
.. ..+++..+...
T Consensus 512 ~~----t~~~~~~i~~~ 524 (543)
T 1nir_A 512 DK----TLKLKAVVKDP 524 (543)
T ss_dssp TT----TTEEEEEECCT
T ss_pred CC----CceEEEeecCC
Confidence 88 45777777654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=258.56 Aligned_cols=304 Identities=11% Similarity=0.091 Sum_probs=239.0
Q ss_pred CCCCEEEEEEcCCC-CEEEEEe----CCC----CEEEEEc--cCCeeE--EEEecCCCcEEEEEEeecC-----------
Q psy4869 116 HKSAITVIQYDPLG-HRLATGS----KDT----DIVLWDV--VAECGL--HRLSGHKGVITDIRFMSQP----------- 171 (2435)
Q Consensus 116 H~~~V~~l~f~p~g-~~laSgs----~Dg----~I~iWd~--~~~~~~--~~l~gH~~~V~~v~~~~~~----------- 171 (2435)
+...++..+|.+.| +++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++.+.+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 34578888899888 5677886 467 8999999 888876 5589999988888775411
Q ss_pred -CCcEEEEEeCC------CcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCC---cEEEEEcCCCCCcccc
Q psy4869 172 -GHHFVVSSAKD------TFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA---ELKVWNVRDRSDIDTE 241 (2435)
Q Consensus 172 -~~~~l~S~s~D------g~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg---~v~vwdl~~~~~~~~~ 241 (2435)
.+..++.++.+ +.|++||++ |...+.+.+|...|.+++|+|+|++|++++.|+ .|++||+++++.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~---- 215 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---- 215 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE----
Confidence 12345555443 799999997 556788888999999999999999999999885 999999875310
Q ss_pred chhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcc
Q psy4869 242 DKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMK 321 (2435)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (2435)
T Consensus 216 -------------------------------------------------------------------------------- 215 (415)
T 2hqs_A 216 -------------------------------------------------------------------------------- 215 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEE-EEeCCCe--EEEEecCCceeeE
Q psy4869 322 RKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIA-SSGYDRQ--IFIWSVYGECENI 398 (2435)
Q Consensus 322 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~La-sgs~Dg~--I~iwd~~~~~~~~ 398 (2435)
..+.+|.+.+.+++|+|||++|+ +++.++. |++||+.+.. .
T Consensus 216 ----------------------------------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~--~ 259 (415)
T 2hqs_A 216 ----------------------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--I 259 (415)
T ss_dssp ----------------------------------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--E
T ss_pred ----------------------------------EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC--E
Confidence 01234566788999999999888 6666654 9999987653 3
Q ss_pred EEeeCCCCCeeEEEEccCCCEEEEEeC-CC--eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC--CeEE
Q psy4869 399 GVMSGHTGAVMDLKFSTDGCHIFTCST-DQ--TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD--CTVK 473 (2435)
Q Consensus 399 ~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg--~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D--g~I~ 473 (2435)
..+..|...+..++|+|||++|+.++. ++ .|++||+.+++. ..+..|...+..+.|+|++..+++++..+ ..|.
T Consensus 260 ~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~ 338 (415)
T 2hqs_A 260 RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA 338 (415)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEE
Confidence 467788899999999999999998886 44 688889988764 45556777788899999998776666553 5899
Q ss_pred EEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCC---eEEEEECCCCcEEEEEecCCCCEEEEEEcCCC
Q psy4869 474 VWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDN---DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDG 543 (2435)
Q Consensus 474 vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg---~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg 543 (2435)
+||+.+++......+ ..+.+++|+|+|++|++++.++ .|++||+. ++....+.+|.+.|.+++|+|.-
T Consensus 339 ~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 339 KQDLATGGVQVLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEETTTCCEEECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EEECCCCCEEEecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 999998876443333 4899999999999999988777 79999987 55677889999999999999964
|
| >3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-24 Score=261.73 Aligned_cols=80 Identities=25% Similarity=0.323 Sum_probs=69.8
Q ss_pred cccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccC
Q psy4869 2191 IGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCT 2270 (2435)
Q Consensus 2191 v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~ 2270 (2435)
++||||||.||+|| |||+++++|+.++++.+..+. ||+|+|+
T Consensus 22 vtpVknQg~cGsCW--------------------------------aFSa~~~lE~~~~~k~~~~~~--LSeq~Lv---- 63 (383)
T 3pw3_A 22 ITSVKNQNRAGTCW--------------------------------CYSSYSFLESELLRMGKGEYD--LSEMFTV---- 63 (383)
T ss_dssp CCCCCBCCBSSCHH--------------------------------HHHHHHHHHHHHHHTTCCCCC--BCHHHHH----
T ss_pred CCCcccCCCCcHHH--------------------------------HHHhHHHHHHHHHHHcCCCCc--cChHHHH----
Confidence 79999999999999 999999999999998876665 9999999
Q ss_pred CCCCCC-------CCCCCCCCCCCChhhHHHHHHHcCccCCCccc
Q psy4869 2271 NCTRMH-------TKTPMSMCMGGDSAAAWMYWINAGLVDGGDYG 2308 (2435)
Q Consensus 2271 ~c~~~~-------~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~ 2308 (2435)
||+... ..+.+.||+||.+..|++|++++||+.+.+||
T Consensus 64 dcd~~ekan~~l~~~g~~~gcdGG~~~~a~~~i~k~Givpe~~YP 108 (383)
T 3pw3_A 64 YNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETFGLVPEEEMR 108 (383)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCSCCCHHHHHHHHHHTCCCBGGGSC
T ss_pred hhchhhhhhhhhhhccCCCCCCCCCHHHHHHHHHHcCcCcHHhCC
Confidence 775311 01235789999999999999999999999999
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-20 Score=246.35 Aligned_cols=300 Identities=16% Similarity=0.042 Sum_probs=234.6
Q ss_pred CCEEEEEEcCCCC-EEEEEE----CCC----cEEEEEc--CCCeEE--EEEecCCcCEEEEEEcC--------------C
Q psy4869 1041 EQVLCARVSPDSK-LLAVSL----LDT----TVKIFFL--DTFKFF--ISLYGHKLPVLSLDMSY--------------D 1093 (2435)
Q Consensus 1041 ~~v~~l~~spdg~-~Lavg~----~dg----~V~i~d~--~~~~~~--~~l~~h~~~V~sl~~sp--------------d 1093 (2435)
..+....|.+.|. ++++|. .+| .|++||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3566677888775 555665 457 8999999 888877 45888888888777764 2
Q ss_pred CCEEEEEECC------CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCcceeEEEEE
Q psy4869 1094 STLIATGSGD------RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG---RVKQWDADNFERIVTLHF 1164 (2435)
Q Consensus 1094 g~~L~Sgs~D------g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg---~V~iwD~~~~~~~~~~~~ 1164 (2435)
+..++.++.+ +.|++||++ +.....+..|...+.+++|+|+++.|++++.++ .|++||+.+++... +
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l-- 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V-- 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E--
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e--
Confidence 5566665554 799999997 555778888999999999999999999999875 99999999876532 2
Q ss_pred EEeecccccCeEEEEEeCCCCEEE-EEeCCCc--EEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEEC-CC--cE
Q psy4869 1165 FISLYGHKLPVLSLDMSYDSTLIA-TGSGDRT--VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK-DG--RV 1238 (2435)
Q Consensus 1165 ~~~~~~h~~~V~~l~~s~dg~~l~-sgs~Dg~--V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~-Dg--~I 1238 (2435)
..+...+.+++|+|+|++|+ +++.|+. |++||+.+++. ..+..|...+.++.|+|+++.|+.++. ++ .|
T Consensus 219 ----~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 219 ----ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp ----ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred ----ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 35778899999999999887 6666554 99999998875 567788899999999999999998885 44 45
Q ss_pred EEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEE
Q psy4869 1239 KQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1318 (2435)
Q Consensus 1239 ~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1318 (2435)
.+||+...+... + ......+.
T Consensus 294 ~~~d~~~~~~~~-l----------------------------------------------------------~~~~~~~~ 314 (415)
T 2hqs_A 294 YKVNINGGAPQR-I----------------------------------------------------------TWEGSQNQ 314 (415)
T ss_dssp EEEETTSSCCEE-C----------------------------------------------------------CCSSSEEE
T ss_pred EEEECCCCCEEE-E----------------------------------------------------------ecCCCccc
Confidence 555655432100 0 01124567
Q ss_pred EEEecCCcceeEEeecC---CeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCCCCceEE
Q psy4869 1319 CARVSPDSKLLAVSLLD---TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDR---TVKVWGLDYGDCHK 1392 (2435)
Q Consensus 1319 ~ia~spdg~~lavgs~d---G~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg---~V~iwdl~~gk~~~ 1392 (2435)
+++|+|||++|++++.+ +.|++||+++++.. .+..+. .+..++|+|||++|++++.|+ .|++||+. ++...
T Consensus 315 ~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~ 391 (415)
T 2hqs_A 315 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKA 391 (415)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEE
T ss_pred CeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEE
Confidence 89999999999998864 58999999988774 455554 899999999999999998887 79999997 55567
Q ss_pred EecccccceEEEEEeeCCC
Q psy4869 1393 SLLAHEDSVTGVTFVPKTH 1411 (2435)
Q Consensus 1393 ~~~~h~~~V~~laf~P~~~ 1411 (2435)
.+..|.+.|.+++|+|...
T Consensus 392 ~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 392 RLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ECCCSSSEEEEEEECCCCC
T ss_pred EeeCCCCCCcCCccccccc
Confidence 8899999999999999753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=261.92 Aligned_cols=325 Identities=11% Similarity=0.068 Sum_probs=246.5
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-CC-----cEEEEEcCCCeEEEEEecCCcC------------------------EEEEE
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLL-DT-----TVKIFFLDTFKFFISLYGHKLP------------------------VLSLD 1089 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~-dg-----~V~i~d~~~~~~~~~l~~h~~~------------------------V~sl~ 1089 (2435)
...+.+++|+|||++|++++. ++ .|.+||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999998 77 8999999999887777655433 78999
Q ss_pred EcCCCCEEEEEECCCcEEEEEccCCc--eeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEe
Q psy4869 1090 MSYDSTLIATGSGDRTVKVWGLDYGD--CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFIS 1167 (2435)
Q Consensus 1090 ~spdg~~L~Sgs~Dg~I~vWd~~t~~--~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~ 1167 (2435)
|+|||++|++++. +.|++||+.++. ....+..|...+..++|+|||++|+.++ ++.|++||+.+++.....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~----- 188 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT----- 188 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC-----
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec-----
Confidence 9999999999887 899999998873 4455667888899999999999999887 469999999876543321
Q ss_pred eccccc----------------CeEEEEEeCCCCEEEEEeCCC---------------------------------cEEE
Q psy4869 1168 LYGHKL----------------PVLSLDMSYDSTLIATGSGDR---------------------------------TVKV 1198 (2435)
Q Consensus 1168 ~~~h~~----------------~V~~l~~s~dg~~l~sgs~Dg---------------------------------~V~i 1198 (2435)
..+.. .+..++|+|||++|++++.|+ .|++
T Consensus 189 -~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 189 -ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp -CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred -cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 12222 147799999999999987765 7899
Q ss_pred EEccC-CceeeEee--ccCCCEEEEEEeeCCCEEEEEEC-----CCcEEEEECCCCceEEEEeeCCcccccCceEEEEEE
Q psy4869 1199 WGLDY-GDCHKSLL--AHEDSVTGVTFVPKTHYFFTTSK-----DGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1199 wd~~t-~~~~~~~~--~h~~~V~~i~~spd~~~lvsgs~-----Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~ 1270 (2435)
||+.+ ++...... .|...+..++| ||++.|+.++. +..|.+||+.+.+....+....
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-------------- 332 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-------------- 332 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--------------
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--------------
Confidence 99998 77554332 47788999999 99999998764 4567788877654322211000
Q ss_pred CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcc-cceEE
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLD-TFKFF 1349 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~-~~k~i 1349 (2435)
+ ..-..+..++|+|||+++++++.+|.++||.++ .++ .
T Consensus 333 -~---------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~ 371 (741)
T 2ecf_A 333 -P---------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-A 371 (741)
T ss_dssp -S---------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-E
T ss_pred -C---------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-e
Confidence 0 000023357899999988899999988888776 455 7
Q ss_pred EEecCCCCCeEEE-EEecCCCEEEE-EeCCC--cEEEEeCCC-CceEEEecccccceEEEEEeeCCCEEEEEeCC----C
Q psy4869 1350 ISLYGHKLPVLSL-DMSYDSTLIAT-GSGDR--TVKVWGLDY-GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD----G 1420 (2435)
Q Consensus 1350 ~~~~~h~~~V~~l-a~spdg~~L~s-Gg~Dg--~V~iwdl~~-gk~~~~~~~h~~~V~~laf~P~~~~laSgg~D----g 1420 (2435)
..+..|...|..+ +|+|||+.|+. ++.++ .+++|++.. ++....+.. ...+..++|+|++.+|+....+ +
T Consensus 372 ~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~ 450 (741)
T 2ecf_A 372 AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPP 450 (741)
T ss_dssp EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCC
Confidence 7788888888887 59999997754 55555 899999874 665666655 5678999999999988865433 4
Q ss_pred cEEEEECCC
Q psy4869 1421 RVKQWDADN 1429 (2435)
Q Consensus 1421 ~V~lWd~~~ 1429 (2435)
.+.+|+...
T Consensus 451 ~~~l~~~~~ 459 (741)
T 2ecf_A 451 QIELFRANG 459 (741)
T ss_dssp EEEEEETTS
T ss_pred eEEEEEcCC
Confidence 688888764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=260.31 Aligned_cols=353 Identities=13% Similarity=0.120 Sum_probs=250.9
Q ss_pred ceEEEeecCCCCeEEEEEc-CC-----eEEEEECCCCCeEEEecCCCCC------------------------EEEEEEc
Q psy4869 77 EVCQLSPNHDSSQLAVAYT-NG-----SLKTFSLDTTDVISTFTGHKSA------------------------ITVIQYD 126 (2435)
Q Consensus 77 ~v~~~~~~~d~~~lav~~~-~G-----~i~i~d~~~~~~~~~l~gH~~~------------------------V~~l~f~ 126 (2435)
.+..++|+|||++||.++. +| .|++||+.+++....+.+|... |.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4678999999999999988 88 8999999999988877766433 8899999
Q ss_pred CCCCEEEEEeCCCCEEEEEccCCe--eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccc
Q psy4869 127 PLGHRLATGSKDTDIVLWDVVAEC--GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLT 204 (2435)
Q Consensus 127 p~g~~laSgs~Dg~I~iWd~~~~~--~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~ 204 (2435)
|||++|++++. +.|.+||+.++. ....+..|...+.+++|+| ++..|+.++ ++.|++||+.+|+.......+..
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 99999999987 999999998873 4556788989999999986 456677776 56899999999887655544433
Q ss_pred e----------------EEEEEEEeCCCeEEEeeCCC-cEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeE
Q psy4869 205 E----------------VWGVCVMREDSYLISGSNDA-ELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267 (2435)
Q Consensus 205 ~----------------V~~l~~~p~~~~l~s~s~Dg-~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 267 (2435)
. +..++|+|||++|++++.|+ .+..|+... ..++. ....
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~--------------------~~p~~--~~~~-- 249 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE--------------------VYADR--TDVI-- 249 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE--------------------ECSSC--EEEE--
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC--------------------CCCCc--ccce--
Confidence 2 46799999999999887654 333443100 00000 0000
Q ss_pred EEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCC--eEEEEeCcc-ceeeeeeccc
Q psy4869 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKND--EVTVYDREK-NYKVQKVQKD 344 (2435)
Q Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~v~i~d~~~-~~~~~~~~~~ 344 (2435)
..... . ....+. .+.+||... ......
T Consensus 250 ----------------------~~~~~--------------~----------~g~~~~~~~l~~~d~~~~~~~~~~---- 279 (741)
T 2ecf_A 250 ----------------------EQRYP--------------A----------AGDANVQVKLGVISPAEQAQTQWI---- 279 (741)
T ss_dssp ----------------------EEECC--------------B----------TTSCCCEEEEEEECSSTTCCCEEE----
T ss_pred ----------------------EeecC--------------C----------CCCCCCeeEEEEEECCCCCceEEe----
Confidence 00000 0 000112 345556543 211100
Q ss_pred ccCccccccceeEecccCCcEEEEEECCCCCEEEEEeC-----CCeEEEEecCCceeeEEEeeCCCC----CeeEEEEcc
Q psy4869 345 VGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGY-----DRQIFIWSVYGECENIGVMSGHTG----AVMDLKFST 415 (2435)
Q Consensus 345 ~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~-----Dg~I~iwd~~~~~~~~~~l~~h~~----~V~~l~~s~ 415 (2435)
....+|...+..++| |||++|+.++. +..|++||+.++... ..+..|.. .+..++|+|
T Consensus 280 -----------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 280 -----------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp -----------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSSCCCCCSCCEECT
T ss_pred -----------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCCcCCcCCceEECC
Confidence 001257888999999 99999997764 578999998765432 23333332 457899999
Q ss_pred CCCEEEEEeCCCeEEEEECC-CCceEEEEeccCcccccc-CcccCCCeEEEEEeCCC--eEEEEeCCC-CcceEeecCcc
Q psy4869 416 DGCHIFTCSTDQTLAVWDLE-KGQRIKKMKGHSTFVNSC-DPVRRGQLLIASGSDDC--TVKVWDPRK-KNQAVSMNNTY 490 (2435)
Q Consensus 416 dg~~L~s~s~Dg~I~vwd~~-tg~~v~~l~~h~~~v~sv-~~~~~~~~llasgs~Dg--~I~vwD~~~-~~~~~~~~~~~ 490 (2435)
||+++++++.|+.++||.++ .++ ...+..|...+..+ .|++++..++++++.++ .+++|++.. +.....+....
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~ 425 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAP 425 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSC
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCC
Confidence 99988889999988888765 455 77788887777776 59999988888888877 899999864 45455665567
Q ss_pred cEEEEEECCCCCEEEEEecC----CeEEEEECCCC
Q psy4869 491 QVTSVAFNDTAECVLTGGID----NDIKMWDLRTN 521 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs~d----g~V~lwD~~s~ 521 (2435)
.+..++|+|+|++|+....+ +.+++||...+
T Consensus 426 ~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 426 GMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 78899999999998876544 56888887543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-19 Score=223.67 Aligned_cols=276 Identities=10% Similarity=0.136 Sum_probs=204.4
Q ss_pred EEEEEeCCCeEEEEecCC-ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC-CeEEEEECC--CCc--eEEEEeccCcc
Q psy4869 376 YIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD-QTLAVWDLE--KGQ--RIKKMKGHSTF 449 (2435)
Q Consensus 376 ~Lasgs~Dg~I~iwd~~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-g~I~vwd~~--tg~--~v~~l~~h~~~ 449 (2435)
++++++.|+.|++||+.. +.........|...+..++|+|++++|++++.+ +.|++|++. +++ .+..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 344557899999999852 222222334577889999999999999998886 899999997 555 344555444 7
Q ss_pred ccccCcccCCCeEEEEEeCCCeEEEEeCC---CCcceEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCC-CcEE
Q psy4869 450 VNSCDPVRRGQLLIASGSDDCTVKVWDPR---KKNQAVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRT-NSVV 524 (2435)
Q Consensus 450 v~sv~~~~~~~~llasgs~Dg~I~vwD~~---~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s-~~~v 524 (2435)
+..++|+|++..+++++..++.|.+||+. .............+.+++|+|+|+++++++ .++.|++||+.+ ++..
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 78899999998888888889999999994 344445555566789999999999988887 899999999987 6543
Q ss_pred E----EEec-CCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcc--cccccCeEEEEEcCCCCEE
Q psy4869 525 Q----KLRG-HSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQ--HNFEKNLLRCAWSVSGLYV 596 (2435)
Q Consensus 525 ~----~l~~-h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~--~~~~~~i~~v~~spdg~~L 596 (2435)
. .+.. ....+.+++|+|+|++|+.++ .++.|++||+................. ......+..++|+|+|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 2 2333 345789999999999877655 799999999963211122233332111 1112356789999999988
Q ss_pred E-EecCCCeEEEEECC--C--CcEEEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEecCC
Q psy4869 597 T-AGSADKCVYIWDTT--T--RRIAYKLPGHNGSVNDVQFHPKEPIIMSAS-SDKTIYLGESP 653 (2435)
Q Consensus 597 a-sgs~Dg~V~iwd~~--s--~~~~~~l~~h~~~V~~l~fspd~~~Lasgs-~Dg~I~vWd~~ 653 (2435)
+ ++..++.|.+||+. + .+.+..+..+.. +.+++|+|++++|++++ .|+.|.+|+++
T Consensus 246 ~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 246 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 7 45579999999998 3 355566655555 89999999999888887 68999999775
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-19 Score=247.95 Aligned_cols=385 Identities=11% Similarity=0.018 Sum_probs=250.1
Q ss_pred EEeecCCCCeEEEEEcCCeEEEEECCCCCeE-EEecCCC-----------------CCEEEEEEcCCCCEEEEEeCCCCE
Q psy4869 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVI-STFTGHK-----------------SAITVIQYDPLGHRLATGSKDTDI 141 (2435)
Q Consensus 80 ~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~-~~l~gH~-----------------~~V~~l~f~p~g~~laSgs~Dg~I 141 (2435)
.+.|. +..++.+..+| | +||+.+++.+ ..+..|. ..|.+++|+|+ .+++.+ .|+.|
T Consensus 30 ~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i 103 (706)
T 2z3z_A 30 GLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGL 103 (706)
T ss_dssp TCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEE
T ss_pred CCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEE
Confidence 36677 66777777888 8 9999999874 4444443 56999999999 555555 45999
Q ss_pred EEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccC-----Cccccccccccce-----------
Q psy4869 142 VLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADT-----GDCFKTMAAHLTE----------- 205 (2435)
Q Consensus 142 ~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~t-----g~~~~~~~~h~~~----------- 205 (2435)
++||+.+++. ..+..|.+.+.+++|+| ++..|+. +.|+.|++||+.+ |+.......+...
T Consensus 104 ~~~d~~~~~~-~~l~~~~~~~~~~~~Sp--dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 104 VGFDMLARKV-TYLFDTNEETASLDFSP--VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEETTTTEE-EEEECCTTCCTTCEECT--TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEECCCCce-EEccCCcccccCCcCCC--CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 9999988765 44566788899999986 4556776 4789999999999 8776554444333
Q ss_pred ---EEEEEEEeCCCeEEEeeCCC-cEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCC
Q psy4869 206 ---VWGVCVMREDSYLISGSNDA-ELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTG 281 (2435)
Q Consensus 206 ---V~~l~~~p~~~~l~s~s~Dg-~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g 281 (2435)
+.+++|+|||++|++++.|. .+..|.+.... ...+. ....
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~--------------------~~~~~-----~~~~----------- 223 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYH--------------------PLEAE-----SKPL----------- 223 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECC--------------------SSSCE-----EEEE-----------
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccC--------------------CCCCc-----eEEe-----------
Confidence 47899999999999887432 22222211000 00000 0000
Q ss_pred ccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEeccc
Q psy4869 282 KKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGH 361 (2435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH 361 (2435)
.. .. .........+.+||......... ....+|
T Consensus 224 ----------~y--------------~~--------~g~~~~~~~l~~~d~~~~~~~~~---------------~~~~~~ 256 (706)
T 2z3z_A 224 ----------YY--------------PM--------AGTPSHHVTVGIYHLATGKTVYL---------------QTGEPK 256 (706)
T ss_dssp ----------CC--------------CB--------TTSCCCEEEEEEEETTTTEEEEC---------------CCCSCT
T ss_pred ----------eC--------------CC--------CCCCCCeeEEEEEECCCCceEee---------------ccCCCC
Confidence 00 00 00011234567787765422111 011257
Q ss_pred CCcEEEEEECCCCCEEEEEeCCC-----eEEEEecCCc-eeeEEEeeCCCC---CeeEEEEcc--CCCEEEEEeCCCeEE
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDR-----QIFIWSVYGE-CENIGVMSGHTG---AVMDLKFST--DGCHIFTCSTDQTLA 430 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg-----~I~iwd~~~~-~~~~~~l~~h~~---~V~~l~~s~--dg~~L~s~s~Dg~I~ 430 (2435)
...+.+++|+|||++|++++.++ .|++||+.++ .........+.. .+..++|+| ||++|+++..|+.++
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 78899999999999999988775 9999999876 222211122222 357889999 999999999999999
Q ss_pred EEECC-CCceEEEEeccCccccc-cCcccCCCeEEEEEeCCC----eEEEEeCCCCcceEeecCcccEEEEEECCCCCEE
Q psy4869 431 VWDLE-KGQRIKKMKGHSTFVNS-CDPVRRGQLLIASGSDDC----TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 431 vwd~~-tg~~v~~l~~h~~~v~s-v~~~~~~~~llasgs~Dg----~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l 504 (2435)
||+++ +++.+..+..|...+.. +.|+|++..+++++..++ .|..||+.++. ...+.+...+.+++|+|+|+++
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l 415 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAI 415 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEE
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEE
Confidence 99886 67778888888777766 789999988888888776 77778887765 4455567779999999999998
Q ss_pred EEEecC----CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCC--cEEEEEcC
Q psy4869 505 LTGGID----NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN--TVRIWDIR 561 (2435)
Q Consensus 505 ~sgs~d----g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg--~I~lWdl~ 561 (2435)
+....+ +.|++||+.+++ ...+ .+...+....|.+. ..+..-+.|| .+..|-..
T Consensus 416 ~~~~~~~~~p~~i~l~d~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~ 475 (706)
T 2z3z_A 416 IDIFQSPTVPRKVTVTNIGKGS-HTLL-EAKNPDTGYAMPEI-RTGTIMAADGQTPLYYKLTM 475 (706)
T ss_dssp EEEEECSSCSCEEEEEESSSCE-EEEE-ECC------CCCCE-EEEEEECTTSSSEEEEEEEC
T ss_pred EEEecCCCCCcEEEEEECCCCe-Eeec-cccchhhhcCCCCc-EEEEEEcCCCCEEEEEEEEe
Confidence 877554 569999999887 3333 34444444444332 2222334455 55555443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=254.08 Aligned_cols=341 Identities=11% Similarity=0.050 Sum_probs=241.8
Q ss_pred eEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCC---CEEEEEEcCCCCEEEEEeCC---------CCEEEEE
Q psy4869 78 VCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKS---AITVIQYDPLGHRLATGSKD---------TDIVLWD 145 (2435)
Q Consensus 78 v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~---~V~~l~f~p~g~~laSgs~D---------g~I~iWd 145 (2435)
...++|+|||++++. +.||.|++||+.+++....+.+|.. .|.+++|+|||++||+++.| +.|.+||
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 346899999997766 6899999999999999888888876 49999999999999999875 6788999
Q ss_pred ccCCeeEEEE---ecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceE----------------
Q psy4869 146 VVAECGLHRL---SGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEV---------------- 206 (2435)
Q Consensus 146 ~~~~~~~~~l---~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V---------------- 206 (2435)
+.+++. ..+ .+|...|..++|+|+ ++.|+.++. +.|++||+.+|+..+....+...+
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred CCCCce-EeccCCccccccccccEECCC--CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 988765 333 355556999999864 456777765 799999999998766555443322
Q ss_pred --EEEEEEeCCCeEEEeeCCC-cEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCcc
Q psy4869 207 --WGVCVMREDSYLISGSNDA-ELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKK 283 (2435)
Q Consensus 207 --~~l~~~p~~~~l~s~s~Dg-~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~ 283 (2435)
.+++|+|||++|++++.|+ .+++|++.....
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~---------------------------------------------- 207 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG---------------------------------------------- 207 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS----------------------------------------------
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCC----------------------------------------------
Confidence 7899999999999887653 455554431100
Q ss_pred ceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCC
Q psy4869 284 KWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGG 363 (2435)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~ 363 (2435)
.+..
T Consensus 208 ----------------------------------------------------------------------------~~~~ 211 (723)
T 1xfd_A 208 ----------------------------------------------------------------------------SIYP 211 (723)
T ss_dssp ----------------------------------------------------------------------------SSSC
T ss_pred ----------------------------------------------------------------------------cCCC
Confidence 0001
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeC------CCCCeeEEEEccCCCEEEEEeC----CCeEEEEE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSG------HTGAVMDLKFSTDGCHIFTCST----DQTLAVWD 433 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~------h~~~V~~l~~s~dg~~L~s~s~----Dg~I~vwd 433 (2435)
.+..+.|.++|.. ..+..|++||+.+... ...+.. |...+..++|+|||++|++... +..|++||
T Consensus 212 ~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 212 TVKPYHYPKAGSE----NPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp CCEEEECCBTTSC----CCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred cceeccCCCCCCC----CCeeEEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence 1234455555542 2345789999876532 123333 3678999999999998877653 35799999
Q ss_pred CCCCceEEEEecc-Ccccc----ccCcccCCCeEEEE-EeCCC------eEEEEe-CCCCcc--eEeec-CcccEEE-EE
Q psy4869 434 LEKGQRIKKMKGH-STFVN----SCDPVRRGQLLIAS-GSDDC------TVKVWD-PRKKNQ--AVSMN-NTYQVTS-VA 496 (2435)
Q Consensus 434 ~~tg~~v~~l~~h-~~~v~----sv~~~~~~~~llas-gs~Dg------~I~vwD-~~~~~~--~~~~~-~~~~v~s-v~ 496 (2435)
+.+++....+..+ ...+. .+.|+|++..+++. +..++ .|.+|| ...+.. ...+. ....+.. ++
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~ 366 (723)
T 1xfd_A 287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA 366 (723)
T ss_dssp TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence 9999877766543 34443 78899999877765 66777 577777 344441 33333 3344554 69
Q ss_pred ECCCCCEEEEEecC---CeEEEEECCCC--cEEEEEec---CCCCEEEEEEcCCCCEEEEEE
Q psy4869 497 FNDTAECVLTGGID---NDIKMWDLRTN--SVVQKLRG---HSDTVTGLSLSPDGSYILSNA 550 (2435)
Q Consensus 497 ~sp~g~~l~sgs~d---g~V~lwD~~s~--~~v~~l~~---h~~~V~~i~~spdg~~las~s 550 (2435)
|+|+|+.|+..+.+ +.++||++... .....+.. |...+..++|+|||++|+...
T Consensus 367 ~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 99999999876555 78999988643 23334443 677789999999999988643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-18 Score=214.66 Aligned_cols=276 Identities=11% Similarity=0.143 Sum_probs=204.2
Q ss_pred EECCCCCE-EEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC-CCeEEEEECCCCce-EEEEec
Q psy4869 369 KYHPDGQY-IASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST-DQTLAVWDLEKGQR-IKKMKG 445 (2435)
Q Consensus 369 ~fspdg~~-Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~vwd~~tg~~-v~~l~~ 445 (2435)
.|.+++++ +++++.++.|++||..++.. ...+..+...+ .++|+||++++++++. ++.|.+||+.+++. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEI-LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCE-EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccce-eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 45555554 77788899999999876543 33444555666 9999999997777766 88999999999987 777777
Q ss_pred cCccccccCcccCCCeEEEEEeCC-C--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEE-ecCCe-EEEEECCC
Q psy4869 446 HSTFVNSCDPVRRGQLLIASGSDD-C--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTG-GIDND-IKMWDLRT 520 (2435)
Q Consensus 446 h~~~v~sv~~~~~~~~llasgs~D-g--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sg-s~dg~-V~lwD~~s 520 (2435)
+.....++.|+|++..++ ++..+ + .|.+||+.+++.+..+.....+.+++|+|+|++++++ ..++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 776666589999997776 44444 3 9999999999888888777778999999999866655 45588 99999886
Q ss_pred CcEE----EEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCE
Q psy4869 521 NSVV----QKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLY 595 (2435)
Q Consensus 521 ~~~v----~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~ 595 (2435)
...+ .....+...+.+++|+|||++++.++ .++.|++||+..... .+.+..+... ..+..++|+|||++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~~-----~~~~~~~~spdg~~ 234 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-ITLLNAVGTN-----NLPGTIVVSRDGST 234 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-CEEEEEEECS-----SCCCCEEECTTSSE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-cceeeeccCC-----CCCceEEECCCCCE
Confidence 4333 12223455689999999999766555 689999999974321 1115555433 25567999999997
Q ss_pred EEEec-CCCeEEEEECCCCcE--EEEecCC----CCC---eeEEEEcCCCCEEEEEEC-CCcEEEecCC
Q psy4869 596 VTAGS-ADKCVYIWDTTTRRI--AYKLPGH----NGS---VNDVQFHPKEPIIMSASS-DKTIYLGESP 653 (2435)
Q Consensus 596 Lasgs-~Dg~V~iwd~~s~~~--~~~l~~h----~~~---V~~l~fspd~~~Lasgs~-Dg~I~vWd~~ 653 (2435)
|+.++ .++.|.+||..++++ +..+..+ ... ++.++|+|++++|++++. ++.|++|++.
T Consensus 235 l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 235 VYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp EEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 76654 578899999999887 4444332 222 356999999998876665 5699999997
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-18 Score=241.48 Aligned_cols=318 Identities=12% Similarity=0.075 Sum_probs=230.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEE-EEEecCC-----------------cCEEEEEEcCCCCEEEEEECCCcE
Q psy4869 1045 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFF-ISLYGHK-----------------LPVLSLDMSYDSTLIATGSGDRTV 1106 (2435)
Q Consensus 1045 ~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~-~~l~~h~-----------------~~V~sl~~spdg~~L~Sgs~Dg~I 1106 (2435)
.+.|. |..++.+..++ | +||+.+++.+ ..+..|. ..|.+++|+|| +.++.+ .++.|
T Consensus 30 ~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i 103 (706)
T 2z3z_A 30 GLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGL 103 (706)
T ss_dssp TCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEE
T ss_pred CCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEE
Confidence 35677 66677777677 8 9999988873 4444333 46999999999 666655 45999
Q ss_pred EEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-----cceeEEEEEEEeecccccC-------
Q psy4869 1107 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN-----FERIVTLHFFISLYGHKLP------- 1174 (2435)
Q Consensus 1107 ~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~-----~~~~~~~~~~~~~~~h~~~------- 1174 (2435)
++||+.+++.. .+..+...+..++|+|+++.|+.+ .++.|++||+.+ ++..... ..+...
T Consensus 104 ~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~------~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 104 VGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT------IDGTETLVYGQAV 175 (706)
T ss_dssp EEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC------SCCBTTEEESSCC
T ss_pred EEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec------cCCCCCeEcccch
Confidence 99999888654 444566778899999999999885 679999999987 6543322 122222
Q ss_pred -------eEEEEEeCCCCEEEEEe---------------------------------CCCcEEEEEccCCceeeEe--ec
Q psy4869 1175 -------VLSLDMSYDSTLIATGS---------------------------------GDRTVKVWGLDYGDCHKSL--LA 1212 (2435)
Q Consensus 1175 -------V~~l~~s~dg~~l~sgs---------------------------------~Dg~V~iwd~~t~~~~~~~--~~ 1212 (2435)
+.++.|+|||++|++++ .+..|++||+.+++..... ..
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 57899999999999987 4467999999988754433 25
Q ss_pred cCCCEEEEEEeeCCCEEEEEECCC-----cEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccc
Q psy4869 1213 HEDSVTGVTFVPKTHYFFTTSKDG-----RVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNR 1287 (2435)
Q Consensus 1213 h~~~V~~i~~spd~~~lvsgs~Dg-----~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~ 1287 (2435)
|...+.++.|+||++.|++++.++ .|.+||+.+.+....+.. ....
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~--------------~~~~--------------- 306 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV--------------ETDK--------------- 306 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE--------------EECS---------------
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE--------------ccCC---------------
Confidence 677899999999999999988776 788888877533221110 0000
Q ss_pred cccccccccccccceeeeeecccccccccEEEEEecC--CcceeEEeecCCeEEEEEcc-cceEEEEecCCCCCeEE-EE
Q psy4869 1288 EADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP--DSKLLAVSLLDTTVKIFFLD-TFKFFISLYGHKLPVLS-LD 1363 (2435)
Q Consensus 1288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~sp--dg~~lavgs~dG~V~v~d~~-~~k~i~~~~~h~~~V~~-la 1363 (2435)
.....+..++|+| ||++++++..+|.++||.++ +++.+..+..|...+.. ++
T Consensus 307 ------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~ 362 (706)
T 2z3z_A 307 ------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAG 362 (706)
T ss_dssp ------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEE
T ss_pred ------------------------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeE
Confidence 0001124578999 99999999999999999887 67777888888888887 79
Q ss_pred EecCCCEEEEEeC-CC----cEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCC----CcEEEEECCCce
Q psy4869 1364 MSYDSTLIATGSG-DR----TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD----GRVKQWDADNFE 1431 (2435)
Q Consensus 1364 ~spdg~~L~sGg~-Dg----~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~D----g~V~lWd~~~~~ 1431 (2435)
|+|||+.|+.++. ++ .|+.||+.+++. ..+ .|...+.+++|+|++.+|+....+ +.|.+||+.+.+
T Consensus 363 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 363 FDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 9999998766554 44 677788887763 333 366779999999999988865443 569999998766
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-17 Score=212.42 Aligned_cols=272 Identities=9% Similarity=0.074 Sum_probs=217.4
Q ss_pred cCCcEEEEEECCCCCEEEEEeC-------CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEE
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGY-------DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVW 432 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~-------Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vw 432 (2435)
....+..++|+|+|++|++++. ++.|.+||..+... ...+. ....+..++|+++|++++.+ ..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 3456789999999999888874 56899999876533 22332 23457889999999966655 457999999
Q ss_pred ECCCCceEEEEeccCcc---------ccccCcccCCCeEEEEE-eCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCC
Q psy4869 433 DLEKGQRIKKMKGHSTF---------VNSCDPVRRGQLLIASG-SDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTA 501 (2435)
Q Consensus 433 d~~tg~~v~~l~~h~~~---------v~sv~~~~~~~~llasg-s~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g 501 (2435)
|..+++.+..+..+... +..+.|+|++..++++. +.++.|.+||+.+++....+. ....+.+++|+|+|
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 99999998888765432 56789999998777776 468999999999998888876 55568899999999
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEEec----CCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCCCCCceEEEEeCc
Q psy4869 502 ECVLTGGIDNDIKMWDLRTNSVVQKLRG----HSDTVTGLSLSPDGSYILSNAM-DNTVRIWDIRPYVPGERCVKVMSGH 576 (2435)
Q Consensus 502 ~~l~sgs~dg~V~lwD~~s~~~v~~l~~----h~~~V~~i~~spdg~~las~s~-Dg~I~lWdl~~~~~~~~~v~~~~~h 576 (2435)
+++++++.++.|.+||..+++.+..+.. +...+.+++|+|+|++++.++. ++.|.+||+.. .+.+..+...
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~----~~~~~~~~~~ 272 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN----GNILAKVAAP 272 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT----CCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC----CcEEEEEEcC
Confidence 9999999999999999999999888764 5667899999999998877665 59999999974 4555555532
Q ss_pred ccccccCeEEEEEcCCCCEEEEec-CCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 577 QHNFEKNLLRCAWSVSGLYVTAGS-ADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 577 ~~~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
. ...+.|+|+|++|+.++ .++.|.+||..+++.+..+..+ ..+.+++|+|++++|+.+..++
T Consensus 273 ~------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 273 E------SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp S------CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred C------CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 2 14589999999665554 7899999999999998887654 4689999999999877777664
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-19 Score=246.92 Aligned_cols=329 Identities=14% Similarity=0.068 Sum_probs=230.3
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCc---CEEEEEEcCCCCEEEEEECC---------CcEEE
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL---PVLSLDMSYDSTLIATGSGD---------RTVKV 1108 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~---~V~sl~~spdg~~L~Sgs~D---------g~I~v 1108 (2435)
..+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 44677899999997776 6799999999999988888877765 49999999999999999875 77889
Q ss_pred EEccCCceeEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeeccccc------------
Q psy4869 1109 WGLDYGDCHKSLL---AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKL------------ 1173 (2435)
Q Consensus 1109 Wd~~t~~~~~~l~---~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~------------ 1173 (2435)
||+.+++. ..+. .|...+..++|+|||+.|+.++. +.|++||+.+++...... .+..
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~------~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS------TGKEGVIYNGLSDWLY 167 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC------CCBTTTEEEEECCHHH
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec------CCCCCceECcccceeE
Confidence 99998876 3343 34445889999999999998886 799999998876544321 2222
Q ss_pred ------CeEEEEEeCCCCEEEEEeCCC----------------------------------cEEEEEccCCceeeEeecc
Q psy4869 1174 ------PVLSLDMSYDSTLIATGSGDR----------------------------------TVKVWGLDYGDCHKSLLAH 1213 (2435)
Q Consensus 1174 ------~V~~l~~s~dg~~l~sgs~Dg----------------------------------~V~iwd~~t~~~~~~~~~h 1213 (2435)
.+.+++|+|||++|+.++.|+ .|++||+.+++....+..+
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 237899999999999887543 7999999988865566544
Q ss_pred ------CCCEEEEEEeeCCCEEEEEECC----CcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccc
Q psy4869 1214 ------EDSVTGVTFVPKTHYFFTTSKD----GRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELV 1283 (2435)
Q Consensus 1214 ------~~~V~~i~~spd~~~lvsgs~D----g~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~ 1283 (2435)
...+..+.|+||++.|++.... ..|.+||+.+.+....+... .++
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---------------~~~---------- 302 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE---------------SEA---------- 302 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE---------------CSS----------
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec---------------cCC----------
Confidence 6689999999999988766532 45777777665432211100 000
Q ss_pred cccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEe--ecCC------eEEEEE-cccce--EEEEe
Q psy4869 1284 SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVS--LLDT------TVKIFF-LDTFK--FFISL 1352 (2435)
Q Consensus 1284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavg--s~dG------~V~v~d-~~~~k--~i~~~ 1352 (2435)
........++|+|||+.|+.. ..+| .|.+|| ...++ ....+
T Consensus 303 ----------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l 354 (723)
T 1xfd_A 303 ----------------------------WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI 354 (723)
T ss_dssp ----------------------------CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS
T ss_pred ----------------------------EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe
Confidence 000001256899999988864 4566 466666 33443 13444
Q ss_pred cCCCCCeEE-EEEecCCCEEEEEeCC---CcEEEEeCCCCc--eEEEecc---cccceEEEEEeeCCCEEEEEe-CCC--
Q psy4869 1353 YGHKLPVLS-LDMSYDSTLIATGSGD---RTVKVWGLDYGD--CHKSLLA---HEDSVTGVTFVPKTHYFFTTS-KDG-- 1420 (2435)
Q Consensus 1353 ~~h~~~V~~-la~spdg~~L~sGg~D---g~V~iwdl~~gk--~~~~~~~---h~~~V~~laf~P~~~~laSgg-~Dg-- 1420 (2435)
..+...+.. ++|+|||++|+..+.+ +.+++|++.... ....+.. |...+..++|+|++.+|+... .++
T Consensus 355 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p 434 (723)
T 1xfd_A 355 TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVP 434 (723)
T ss_dssp CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSC
T ss_pred ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCC
Confidence 444445554 6999999999766555 789999986432 2333433 677899999999998887543 333
Q ss_pred cEEEEECCCce
Q psy4869 1421 RVKQWDADNFE 1431 (2435)
Q Consensus 1421 ~V~lWd~~~~~ 1431 (2435)
...+++....+
T Consensus 435 ~~~~~~~~~~~ 445 (723)
T 1xfd_A 435 MVTVHNTTDKK 445 (723)
T ss_dssp CEEEEETTTCC
T ss_pred eEEEEECCCCC
Confidence 23445544433
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-18 Score=210.31 Aligned_cols=256 Identities=17% Similarity=0.157 Sum_probs=196.8
Q ss_pred EEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC-CceEEEEecc-CccccccCcc
Q psy4869 379 SSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK-GQRIKKMKGH-STFVNSCDPV 456 (2435)
Q Consensus 379 sgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t-g~~v~~l~~h-~~~v~sv~~~ 456 (2435)
.++.|+.|++||+.+... ..+..|...|.+++|+||+++|++++ ++.|++||+.+ ++......+| ...+.++.|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~--~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM--RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEE--EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCce--eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 346889999999977543 34556889999999999999999987 78999999999 8877776666 3678899999
Q ss_pred cCCCeEEEEEe-CCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEE-EEecCCeEEEEECCC-CcEEEEEecCC
Q psy4869 457 RRGQLLIASGS-DDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVL-TGGIDNDIKMWDLRT-NSVVQKLRGHS 531 (2435)
Q Consensus 457 ~~~~~llasgs-~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~-sgs~dg~V~lwD~~s-~~~v~~l~~h~ 531 (2435)
|++..+++... .++ .|..||+..+. ...+.....+..++|+|++++|+ ++..++.+.||+++. ......+..|.
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 99866554442 334 44455555544 34444445689999999999887 778899999988532 23446677788
Q ss_pred CCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC--------
Q psy4869 532 DTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-------- 602 (2435)
Q Consensus 532 ~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-------- 602 (2435)
..+.+++|+|+|++|+.++ .|+.++||+++. ....+..+..+. ..+..+.|+|+|++|+.++.+
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV---DGSSVERITDSA----YGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEET---TSSCEEECCCCS----EEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECC---CCCCcEEEecCC----cccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 8999999999999888766 599999999863 233445555443 357789999999999988765
Q ss_pred ---CeEEEEECCCCcE--EEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 603 ---KCVYIWDTTTRRI--AYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 603 ---g~V~iwd~~s~~~--~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
+.|++||+.+++. +..+.+|...|.+++|+|+++.|++++.|.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999998865 445558899999999999999998887664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-17 Score=208.45 Aligned_cols=269 Identities=10% Similarity=0.124 Sum_probs=194.3
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCC-CeEEEEecC--Cc-eeeEEEeeCCCCCeeEEEEccCCCEEEEEeC-CCeEEEEEC
Q psy4869 360 GHGGEIFCSKYHPDGQYIASSGYD-RQIFIWSVY--GE-CENIGVMSGHTGAVMDLKFSTDGCHIFTCST-DQTLAVWDL 434 (2435)
Q Consensus 360 gH~~~V~~l~fspdg~~Lasgs~D-g~I~iwd~~--~~-~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~vwd~ 434 (2435)
.|...+.+++|+|+|++|++++.+ +.|++|++. .+ ...+..+..+. .+..++|+|++++|++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 466788899999999999998887 999999987 32 23334444444 8899999999998877765 889999999
Q ss_pred C---CCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC-CcceE------eecCcccEEEEEECCCCCEE
Q psy4869 435 E---KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK-KNQAV------SMNNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 435 ~---tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~-~~~~~------~~~~~~~v~sv~~sp~g~~l 504 (2435)
. .++.+..+..+ ..+.++.|+|++..+++++..++.|.+||+.. ++... .......+..++|+|+|+++
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 4 44455555544 35788999999987777776899999999987 54321 22344578899999999987
Q ss_pred EEEe-cCCeEEEEECCC--CcE--EEEEe----cC--CCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEE
Q psy4869 505 LTGG-IDNDIKMWDLRT--NSV--VQKLR----GH--SDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKV 572 (2435)
Q Consensus 505 ~sgs-~dg~V~lwD~~s--~~~--v~~l~----~h--~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~ 572 (2435)
++++ .++.|.+||++. ++. ...+. ++ ...+.+++|+|||++|+.+. .|+.|++||+.......+.+..
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence 6665 789999999953 433 33332 11 23677899999999887544 7999999999732212234444
Q ss_pred EeCcccccccCeEEEEEcCCCCEEEEec-CCCeEEEE--ECCCCc--EEEEecCCCCCeeEEEEcCCCC
Q psy4869 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGS-ADKCVYIW--DTTTRR--IAYKLPGHNGSVNDVQFHPKEP 636 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iw--d~~s~~--~~~~l~~h~~~V~~l~fspd~~ 636 (2435)
+..+. .+..++|+|+|++|++++ .++.|.+| |..+++ .+..+.. .....+++|.|+.+
T Consensus 273 ~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 273 QPTET-----QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EECSS-----SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred ecCCC-----ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 44332 366799999999888887 68999999 555664 3444433 34577788877653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-17 Score=208.42 Aligned_cols=279 Identities=11% Similarity=0.054 Sum_probs=222.2
Q ss_pred CceEEEEecCCCcEEEEec--------CCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEE-eCCCeEEEEEccC
Q psy4869 886 SEVRALAFSSDNLALVSAC--------ASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG-TKDGRLLIVDIGA 956 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~--------~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg-~~dg~V~vwd~~s 956 (2435)
..+..++|+++|++|+++. ++.|.+||..+++.+..+..+..+.+++|+|++++|+++ ..++.|.+||+++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 120 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT 120 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence 4688999999999988877 458999999999999888877778889999999977665 4579999999998
Q ss_pred CceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 957 GEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1036 (2435)
Q Consensus 957 g~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (2435)
++++..+..+... .+.
T Consensus 121 ~~~~~~~~~~~~~------~~~---------------------------------------------------------- 136 (353)
T 3vgz_A 121 GEVKGRLVLDDRK------RTE---------------------------------------------------------- 136 (353)
T ss_dssp CCEEEEEESCCCC------CCS----------------------------------------------------------
T ss_pred CeeEEEEecCCCc------ccc----------------------------------------------------------
Confidence 8776544322100 000
Q ss_pred cccCCCEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCC
Q psy4869 1037 LKLEEQVLCARVSPDSKLLAVSL--LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1114 (2435)
Q Consensus 1037 ~~~~~~v~~l~~spdg~~Lavg~--~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~ 1114 (2435)
......+.+++|+|+|++++++. .++.|.+||..+++.+..+..+...+.+++|+|++++|++++.++.|.+||..++
T Consensus 137 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 137 EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 00112356789999999888886 3688999999999998888866667889999999999999999999999999999
Q ss_pred ceeEEEec----cCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEE
Q psy4869 1115 DCHKSLLA----HEDSVTGVTFVPKTHYFFTTSK-DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIAT 1189 (2435)
Q Consensus 1115 ~~~~~l~~----h~~~V~~v~fsp~~~~l~s~s~-Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 1189 (2435)
+.+..+.. +...+..++|+|+++.+++++. ++.|.+||..+++....+. ... ...++|+++++++++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~------~~~--~~~~~~s~dg~~l~v 288 (353)
T 3vgz_A 217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA------APE--SLAVLFNPARNEAYV 288 (353)
T ss_dssp EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE------CSS--CCCEEEETTTTEEEE
T ss_pred eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE------cCC--CceEEECCCCCEEEE
Confidence 98887764 5557889999999997777665 4899999999887766553 111 256899999997766
Q ss_pred Ee-CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCc
Q psy4869 1190 GS-GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1237 (2435)
Q Consensus 1190 gs-~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~ 1237 (2435)
+. .++.|.+||..+++.+..+..+ ..+.+++|+|+++.|+++..++.
T Consensus 289 ~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 289 THRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECCC
T ss_pred EECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcccc
Confidence 65 6899999999999988777543 46899999999998887776543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-17 Score=207.44 Aligned_cols=277 Identities=13% Similarity=0.083 Sum_probs=202.9
Q ss_pred EEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCce-eEEEecc
Q psy4869 1047 RVSPDSKLL-AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDC-HKSLLAH 1123 (2435)
Q Consensus 1047 ~~spdg~~L-avg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~-Dg~I~vWd~~t~~~-~~~l~~h 1123 (2435)
.|.+++.++ ++...++.|.+||..+++.+..+..+...+ .++|+|++++|++++. ++.|.+||+.+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 466666664 455567999999999999988888766667 9999999997776666 89999999999987 7777767
Q ss_pred CCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEE-eCCCc-EEE
Q psy4869 1124 EDSVTGVTFVPKTHYFFTTSKDG---RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG-SGDRT-VKV 1198 (2435)
Q Consensus 1124 ~~~V~~v~fsp~~~~l~s~s~Dg---~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg-s~Dg~-V~i 1198 (2435)
.....+++|+|++++++++..++ .|++||+.+++....+. ......+++|+|+|++++++ ..++. |++
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-------IPYDAVGIAISPNGNGLILIDRSSANTVRR 155 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-------CCTTEEEEEECTTSSCEEEEEETTTTEEEE
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-------CCCCccceEECCCCCEEEEEecCCCceEEE
Confidence 66666699999999998555553 89999999887655442 34456899999999866555 55588 999
Q ss_pred EEccCCcee----eEeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCce---EEEEeeCCcccccCceEEEEEE
Q psy4869 1199 WGLDYGDCH----KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFER---IVTLHFNPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1199 wd~~t~~~~----~~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~---v~~~~~~~~~~~~~~~~lv~g~ 1270 (2435)
|++.....+ .....+......+.|+|+++.+++++ .++.|.+||+.+.+. +..+.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----------------- 218 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----------------- 218 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-----------------
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-----------------
Confidence 998764432 12223445689999999999776665 588899999876554 21111
Q ss_pred CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee-cCCeEEEEEcccceE-
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-LDTTVKIFFLDTFKF- 1348 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs-~dG~V~v~d~~~~k~- 1348 (2435)
....+..++|+|||++++++. .++.|.+||.++++.
T Consensus 219 ------------------------------------------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 219 ------------------------------------------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS 256 (331)
T ss_dssp ------------------------------------------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred ------------------------------------------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence 112345689999999777655 578899999998876
Q ss_pred -EEEecCC----CC---CeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCce
Q psy4869 1349 -FISLYGH----KL---PVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1349 -i~~~~~h----~~---~V~~la~spdg~~L~sGg-~Dg~V~iwdl~~gk~ 1390 (2435)
+..+..+ .. ....++|+|||++|++++ .++.|++||+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 4444332 22 235689999999886655 567999999987653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-17 Score=208.26 Aligned_cols=278 Identities=11% Similarity=0.048 Sum_probs=209.4
Q ss_pred CEEEEEECCCcEEEEEccCCceeEEEeccCC--CEEEEEEccCCCEEE-EEeCCCcEEEEeCCCcceeEEEEEEEeeccc
Q psy4869 1095 TLIATGSGDRTVKVWGLDYGDCHKSLLAHED--SVTGVTFVPKTHYFF-TTSKDGRVKQWDADNFERIVTLHFFISLYGH 1171 (2435)
Q Consensus 1095 ~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~--~V~~v~fsp~~~~l~-s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h 1171 (2435)
++|++++.++.|.+||+.+++.+..+..... .+..++|+|+++.++ ++..++.|.+||+.+++....+.... ...+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST-PEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-TTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC-cccc
Confidence 4789999999999999999988887763322 478999999998665 55567899999999887665543100 0001
Q ss_pred ccCeEEEEEeCCCCEEEEEe------------CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEE
Q psy4869 1172 KLPVLSLDMSYDSTLIATGS------------GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1239 (2435)
Q Consensus 1172 ~~~V~~l~~s~dg~~l~sgs------------~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~ 1239 (2435)
...+..++|++++++++++. .++.|++||+.+++.+..+.. ...+.++.|+|+++.|+++ ++.|.
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence 23567899999999999886 579999999999887776654 4567889999999988887 78999
Q ss_pred EEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEE
Q psy4869 1240 QWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1319 (2435)
Q Consensus 1240 vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1319 (2435)
+||+.+.+.+..+....... .
T Consensus 158 ~~d~~~~~~~~~~~~~~~~~-----------------------------------------------------------~ 178 (337)
T 1pby_B 158 VMDPEAGTLVEDKPIQSWEA-----------------------------------------------------------E 178 (337)
T ss_dssp EEETTTTEEEEEECSTTTTT-----------------------------------------------------------T
T ss_pred EEECCCCcEeeeeeccccCC-----------------------------------------------------------C
Confidence 99998876554443211000 0
Q ss_pred EEecCCcceeEEeecC------------------------CeEEEEEcccceEE-EEecCCCCCeEEEEEecCCCEEEEE
Q psy4869 1320 ARVSPDSKLLAVSLLD------------------------TTVKIFFLDTFKFF-ISLYGHKLPVLSLDMSYDSTLIATG 1374 (2435)
Q Consensus 1320 ia~spdg~~lavgs~d------------------------G~V~v~d~~~~k~i-~~~~~h~~~V~~la~spdg~~L~sG 1374 (2435)
+.|+|||+.+++.... ..|.+||..+++.. ..+..+...+..++|+|||++|+++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 258 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA 258 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe
Confidence 1234444433332211 15789999887764 3344566778899999999999998
Q ss_pred eCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEEEee
Q psy4869 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHI 1438 (2435)
Q Consensus 1375 g~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~~~~ 1438 (2435)
++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.|+.|.+||+.+.+.+..++.
T Consensus 259 --~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 259 --YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp --ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred --CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 799999999999988776544 4578999999999999889999999999999998888763
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=208.08 Aligned_cols=298 Identities=10% Similarity=0.031 Sum_probs=215.6
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEEecCCc--CEEEEEEcCCCCEEE-EEECCCcEEEEEccCCceeEEEec-c----C
Q psy4869 1053 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKL--PVLSLDMSYDSTLIA-TGSGDRTVKVWGLDYGDCHKSLLA-H----E 1124 (2435)
Q Consensus 1053 ~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~--~V~sl~~spdg~~L~-Sgs~Dg~I~vWd~~t~~~~~~l~~-h----~ 1124 (2435)
.+|+++..++.|.+||..+++.+..+..... .+..++|+|+++.++ ++..++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4788888999999999999998888763322 478899999997665 555678999999999998877653 2 2
Q ss_pred CCEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeC
Q psy4869 1125 DSVTGVTFVPKTHYFFTTS------------KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG 1192 (2435)
Q Consensus 1125 ~~V~~v~fsp~~~~l~s~s------------~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 1192 (2435)
..+..++|+|+++.++++. .++.|.+||+.+++....+. ....+.+++|+|++++|+++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-------APRQITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-------CCSSCCCEEECTTSSCEEEE--
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe-------CCCCcceeEECCCCCEEEEe--
Confidence 2567899999999888886 57999999998876655442 24457789999999988888
Q ss_pred CCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEE--EEECCCCceEEEEeeCCcccccCceEEEEEE
Q psy4869 1193 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK--QWDADNFERIVTLHFNPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1193 Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~--vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~ 1270 (2435)
++.|++||+.+++.+..+..+... ..+.|+|++..++..+.++... +|.... .......+..
T Consensus 153 ~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------- 216 (337)
T 1pby_B 153 GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTAR--------KDIDPADPTA------- 216 (337)
T ss_dssp SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEB--------TTSCTTSGGG-------
T ss_pred CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccc--------cccccccccc-------
Confidence 688999999999887776544311 1237889888777665444332 121100 0000000000
Q ss_pred CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEE
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI 1350 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~ 1350 (2435)
....+.+||+...+.. . .........+..++|+|||++++++ ++.|++||+++++.+.
T Consensus 217 ~~~~v~~~d~~~~~~~-~-------------------~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~ 274 (337)
T 1pby_B 217 YRTGLLTMDLETGEMA-M-------------------REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK 274 (337)
T ss_dssp EEEEEEEEETTTCCEE-E-------------------EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE
T ss_pred cccceEEEeCCCCCce-E-------------------eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcc
Confidence 0115777877633221 0 0001123467789999999999988 7999999999999888
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccc
Q psy4869 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE 1398 (2435)
Q Consensus 1351 ~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~ 1398 (2435)
.+..+ ..+.+++|+|||++|++++.++.|++||+.+++.+..++.+.
T Consensus 275 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 275 RVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred eecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 77754 457889999999999999999999999999999988776553
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.3e-17 Score=203.58 Aligned_cols=271 Identities=10% Similarity=0.145 Sum_probs=192.3
Q ss_pred CCCeEEEEecCC--ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC---CCeEEEEECCCCc--eEEEEeccCccccccC
Q psy4869 382 YDRQIFIWSVYG--ECENIGVMSGHTGAVMDLKFSTDGCHIFTCST---DQTLAVWDLEKGQ--RIKKMKGHSTFVNSCD 454 (2435)
Q Consensus 382 ~Dg~I~iwd~~~--~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~---Dg~I~vwd~~tg~--~v~~l~~h~~~v~sv~ 454 (2435)
.++.|.+|++.. +.........+...+..++|+|||+ |++++. ++.|++||+.+++ .+..+..+...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 345678887653 3222223344557788899999998 666554 6899999997765 4455556777888999
Q ss_pred cccCCCeEEEEEeCCCeEEEEeCCCC-c--ceEeecC----------cccEEEEEECCCCCEEEEEecCCeEEEEECC-C
Q psy4869 455 PVRRGQLLIASGSDDCTVKVWDPRKK-N--QAVSMNN----------TYQVTSVAFNDTAECVLTGGIDNDIKMWDLR-T 520 (2435)
Q Consensus 455 ~~~~~~~llasgs~Dg~I~vwD~~~~-~--~~~~~~~----------~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~-s 520 (2435)
|+|++..++++...++.|.+||+... . .+..... ...+.+++|+|+|+++++...++.|++||+. +
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 99999877777768999999999632 2 2222221 1248899999999966666678899999998 5
Q ss_pred CcEE--EEEecC-CCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCCCCCceEEEEeCcccc--cccCeEEEEEcCCCC
Q psy4869 521 NSVV--QKLRGH-SDTVTGLSLSPDGSYILS-NAMDNTVRIWDIRPYVPGERCVKVMSGHQHN--FEKNLLRCAWSVSGL 594 (2435)
Q Consensus 521 ~~~v--~~l~~h-~~~V~~i~~spdg~~las-~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~--~~~~i~~v~~spdg~ 594 (2435)
++.. ..+..+ ...+..++|+|||++|++ +..++.|.+|++.........+..+...... ....+..++|+|||+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 5443 223333 336889999999997766 4578999999987421111223333322111 113478899999999
Q ss_pred EEE-EecCCCeEEEEECC---CCcEEEEecCCCCCeeEEEEcCCCCEEEEEECC-CcEEEecCC
Q psy4869 595 YVT-AGSADKCVYIWDTT---TRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSD-KTIYLGESP 653 (2435)
Q Consensus 595 ~La-sgs~Dg~V~iwd~~---s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~D-g~I~vWd~~ 653 (2435)
+|+ ++..++.|.+||+. ..+.+..+..|...+..++|+||+++|++++.+ +.|.+|+++
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 884 55678999999987 335666777777889999999999988888865 899999775
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=201.88 Aligned_cols=255 Identities=15% Similarity=0.115 Sum_probs=195.9
Q ss_pred EcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccC-CeeEEEEecCC-CcEEEEEEeecC
Q psy4869 94 YTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVA-ECGLHRLSGHK-GVITDIRFMSQP 171 (2435)
Q Consensus 94 ~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~-~~~~~~l~gH~-~~V~~v~~~~~~ 171 (2435)
+.++.|++||+.+++.. .+..|...|.+++|+|+|++||+++ ++.|++||+.+ ++....+.+|. ..|.+++|+|
T Consensus 19 ~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-- 94 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-- 94 (297)
T ss_dssp CCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT--
T ss_pred CcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC--
Confidence 35788999999998765 5566999999999999999999987 78999999998 77766666664 7899999985
Q ss_pred CCcEEEEEe--CCCcEEEEec--cCCccccccccccceEEEEEEEeCCCeEE-EeeCCCcEEEEEcCCCCCccccchhhh
Q psy4869 172 GHHFVVSSA--KDTFVKIWDA--DTGDCFKTMAAHLTEVWGVCVMREDSYLI-SGSNDAELKVWNVRDRSDIDTEDKDKL 246 (2435)
Q Consensus 172 ~~~~l~S~s--~Dg~I~iWd~--~tg~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~Dg~v~vwdl~~~~~~~~~~~~~~ 246 (2435)
++.+|+.++ .|+.++||.+ .+++ ...+..+. .+..++|+|++++|+ +++.|+.+++|+++....
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--------- 163 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--------- 163 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC---------
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCC---------
Confidence 456778887 4456666665 4444 44444443 488899999999877 788999999998652100
Q ss_pred hhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCe
Q psy4869 247 SEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDE 326 (2435)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 326 (2435)
T Consensus 164 -------------------------------------------------------------------------------- 163 (297)
T 2ojh_A 164 -------------------------------------------------------------------------------- 163 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEe-CCCeEEEEecCCceeeEEEeeCCC
Q psy4869 327 VTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGECENIGVMSGHT 405 (2435)
Q Consensus 327 v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~l~~h~ 405 (2435)
....+..|...+.+++|+|+|++|+.++ .++.+++|++.........+..|.
T Consensus 164 ---------------------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 216 (297)
T 2ojh_A 164 ---------------------------VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA 216 (297)
T ss_dssp ---------------------------CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred ---------------------------cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence 0001224556788999999999888766 589999999863334456677788
Q ss_pred CCeeEEEEccCCCEEEEEeCC-----------CeEEEEECCCCce--EEEEeccCccccccCcccCCCeEEEEEeCCC
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTD-----------QTLAVWDLEKGQR--IKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~D-----------g~I~vwd~~tg~~--v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg 470 (2435)
..+..++|+|++++|+.++.+ +.|++||+.+++. +..+.+|...+..+.|+|++..+++++..++
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence 899999999999999988765 5699999988865 4445578888999999999987776666554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=226.33 Aligned_cols=274 Identities=11% Similarity=0.100 Sum_probs=201.6
Q ss_pred cCCcEEEEEECCCCCEEEEEeC-CCeEEEEecCCceeeEEEeeCCC-CCeeEEEEccCCCEEEEEeC---CCeEEEEECC
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGY-DRQIFIWSVYGECENIGVMSGHT-GAVMDLKFSTDGCHIFTCST---DQTLAVWDLE 435 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~-Dg~I~iwd~~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s~s~---Dg~I~vwd~~ 435 (2435)
+..+|++++|+|||++||.++. ||.++||++.++. ...+..|. ..+..++|+|| +.+++++. +...++|.+.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 3567999999999999999887 9999999986543 23444554 68999999999 77777765 4445565543
Q ss_pred C---CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC--
Q psy4869 436 K---GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID-- 510 (2435)
Q Consensus 436 t---g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d-- 510 (2435)
. +... .+..+. ......|+++++.++++.+.++.+.+||+.+++......+.. .+++|+|||++|+.++.+
T Consensus 97 ~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEET
T ss_pred ccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCC
Confidence 2 3322 332222 233557888887655555555555699998887655444333 789999999999988777
Q ss_pred --CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCC--cEEEEEcCCCCCCCceEEEEeCccccccc----
Q psy4869 511 --NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN--TVRIWDIRPYVPGERCVKVMSGHQHNFEK---- 582 (2435)
Q Consensus 511 --g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg--~I~lWdl~~~~~~~~~v~~~~~h~~~~~~---- 582 (2435)
+.|++||+.+++.. .+..|.+.+..++|+|||++|+++..|+ .|++||+.. ++.. .+.++......
T Consensus 173 ~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~----~~~~-~~~~~~~~~~~~~~~ 246 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD----GSVE-DLELPSKDFSSYRPT 246 (582)
T ss_dssp TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT----CCEE-ECCCSCSHHHHHCCS
T ss_pred CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC----CcEE-EccCCCcChhhhhhc
Confidence 78999999988764 6788889999999999999999888898 899999873 3444 45444321110
Q ss_pred CeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCc---EEEecCC
Q psy4869 583 NLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKT---IYLGESP 653 (2435)
Q Consensus 583 ~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~---I~vWd~~ 653 (2435)
.....+|+|||.++++++.|+.+++|++ ++.+. .+.+.|.+++|+ +++++++++.+.. +++|+..
T Consensus 247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred cccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 1122339999999999999999999999 76554 345779999999 9999999888854 7777764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-17 Score=227.85 Aligned_cols=324 Identities=11% Similarity=0.117 Sum_probs=224.9
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCC---cEEEEEEeecCCCcEEEEEeC---------CCcEEEEe
Q psy4869 122 VIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKG---VITDIRFMSQPGHHFVVSSAK---------DTFVKIWD 189 (2435)
Q Consensus 122 ~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~---~V~~v~~~~~~~~~~l~S~s~---------Dg~I~iWd 189 (2435)
.++|+|+|.+++++ .|+.|++||+.+++....+.+|.. .|.+++|+| ++++|+.++. |+.|++||
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEEE
Confidence 67899999666655 699999999999887777776654 499999985 4566777765 79999999
Q ss_pred ccCCccc--cccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeE
Q psy4869 190 ADTGDCF--KTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267 (2435)
Q Consensus 190 ~~tg~~~--~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 267 (2435)
+++|+.+ ..+ ...+..++|+|||++|+.+. |+.|++||+.+++.... ..
T Consensus 97 ~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l---------------~~---------- 147 (719)
T 1z68_A 97 LSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI---------------TF---------- 147 (719)
T ss_dssp TTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC---------------CC----------
T ss_pred CCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE---------------ec----------
Confidence 9999873 233 24588899999999999885 78999999876532100 00
Q ss_pred EEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccC
Q psy4869 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGR 347 (2435)
Q Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 347 (2435)
.+..
T Consensus 148 ------------~~~~---------------------------------------------------------------- 151 (719)
T 1z68_A 148 ------------NGRE---------------------------------------------------------------- 151 (719)
T ss_dssp ------------CCBT----------------------------------------------------------------
T ss_pred ------------CCCc----------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccceeEecccCC---------cEEEEEECCCCCEEEEEeCCC----------------------------------
Q psy4869 348 TSNLFAPIMLLEGHGG---------EIFCSKYHPDGQYIASSGYDR---------------------------------- 384 (2435)
Q Consensus 348 ~~~~~~p~~~l~gH~~---------~V~~l~fspdg~~Lasgs~Dg---------------------------------- 384 (2435)
..++.||.. ...+++|+|||++||+++.|.
T Consensus 152 -------~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~ 224 (719)
T 1z68_A 152 -------NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVV 224 (719)
T ss_dssp -------TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEE
T ss_pred -------CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCee
Confidence 000112211 124689999999999988652
Q ss_pred eEEEEecCCcee----eE---EEeeCCCCCeeEEEEccCCCEEEEEeCC----CeEEEEE----CCCCceEEEE----ec
Q psy4869 385 QIFIWSVYGECE----NI---GVMSGHTGAVMDLKFSTDGCHIFTCSTD----QTLAVWD----LEKGQRIKKM----KG 445 (2435)
Q Consensus 385 ~I~iwd~~~~~~----~~---~~l~~h~~~V~~l~~s~dg~~L~s~s~D----g~I~vwd----~~tg~~v~~l----~~ 445 (2435)
.|++||+.+... .+ ..+.+|...+..++|+||++.+++.... ..|.+|| +.+++....+ .+
T Consensus 225 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~ 304 (719)
T 1z68_A 225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES 304 (719)
T ss_dssp EEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC
T ss_pred EEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc
Confidence 788999876542 11 1134688899999999998766664432 2488999 8777665544 46
Q ss_pred cCcccc-----ccCcccCCCeEEE-EEeCCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC-----Ce
Q psy4869 446 HSTFVN-----SCDPVRRGQLLIA-SGSDDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID-----ND 512 (2435)
Q Consensus 446 h~~~v~-----sv~~~~~~~~lla-sgs~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d-----g~ 512 (2435)
|...+. .+.|+|++..+++ +...++ .|.+||+..++......+...+..+.+. +++.|+..+.+ +.
T Consensus 305 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~ 383 (719)
T 1z68_A 305 RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGR 383 (719)
T ss_dssp SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTC
T ss_pred CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCce
Confidence 777776 7889999987655 444555 5777788776643333445567777777 88877776654 77
Q ss_pred EEEEECCC--Cc-EEEEEe----cCCCCEEEEEEcCCCCEEEE-EECC--CcEEEEEcC
Q psy4869 513 IKMWDLRT--NS-VVQKLR----GHSDTVTGLSLSPDGSYILS-NAMD--NTVRIWDIR 561 (2435)
Q Consensus 513 V~lwD~~s--~~-~v~~l~----~h~~~V~~i~~spdg~~las-~s~D--g~I~lWdl~ 561 (2435)
+++|.+.. +. ....+. +|...+..+.|+|||++++. ++.+ ..+.+||+.
T Consensus 384 ~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 384 RNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp BEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred EEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 88887653 42 233443 26677889999999988774 4433 568889876
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-15 Score=189.89 Aligned_cols=289 Identities=12% Similarity=0.119 Sum_probs=195.0
Q ss_pred EEEEEEC----CCcEEEEEcC--CCeEEE-EEecCCcCEEEEEEcCCCCEEEEEEC---CCcEEEEEccCCc--eeEEEe
Q psy4869 1054 LLAVSLL----DTTVKIFFLD--TFKFFI-SLYGHKLPVLSLDMSYDSTLIATGSG---DRTVKVWGLDYGD--CHKSLL 1121 (2435)
Q Consensus 1054 ~Lavg~~----dg~V~i~d~~--~~~~~~-~l~~h~~~V~sl~~spdg~~L~Sgs~---Dg~I~vWd~~t~~--~~~~l~ 1121 (2435)
.+++|+. ++.|.+|+++ +++... ....+...+..++|+|||+ |++++. ++.|.+|++..++ .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 4556643 4567777665 455433 2334556778899999999 555544 6899999997765 344445
Q ss_pred ccCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEeec------ccccCeEEEEEeCCCCEEEEEeCCC
Q psy4869 1122 AHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISLY------GHKLPVLSLDMSYDSTLIATGSGDR 1194 (2435)
Q Consensus 1122 ~h~~~V~~v~fsp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~~------~h~~~V~~l~~s~dg~~l~sgs~Dg 1194 (2435)
.+...+..++|+|++++|++++ .++.|.+|++........+....... .....+.+++|+|+|+++++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 5777889999999999888887 67899999996433333332111100 0123588999999999666666788
Q ss_pred cEEEEEcc-CCceee--Eeecc-CCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCc-eEEEEeeCCcccccCceEEEE
Q psy4869 1195 TVKVWGLD-YGDCHK--SLLAH-EDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFE-RIVTLHFNPNVYLPLQIQVVT 1268 (2435)
Q Consensus 1195 ~V~iwd~~-t~~~~~--~~~~h-~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~-~v~~~~~~~~~~~~~~~~lv~ 1268 (2435)
.|++||+. .++... .+..+ ......++|+|+++++++++ .++.|.+||+.... .+....
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~--------------- 227 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG--------------- 227 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE---------------
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee---------------
Confidence 99999998 554322 22222 33678899999999766654 67888998875411 110000
Q ss_pred EECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEE-eecCCeEEEEEcc---
Q psy4869 1269 GGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV-SLLDTTVKIFFLD--- 1344 (2435)
Q Consensus 1269 g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lav-gs~dG~V~v~d~~--- 1344 (2435)
..... .........+..++|+|||++|++ ...++.|.+|+++
T Consensus 228 --------~~~~~--------------------------~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 228 --------IVKTI--------------------------PADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp --------EEESS--------------------------CTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred --------eeeec--------------------------CCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 00000 000011245788999999998755 5568999999997
Q ss_pred cceEEEEecCCCCCeEEEEEecCCCEEEEEeCC-CcEEEE--eCCCCceEE
Q psy4869 1345 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD-RTVKVW--GLDYGDCHK 1392 (2435)
Q Consensus 1345 ~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~D-g~V~iw--dl~~gk~~~ 1392 (2435)
..+.+..+..+...+..++|+|||++|++++.+ +.|.+| |.++|++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 274 HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 335666777766778999999999998888765 899999 556777654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.4e-16 Score=193.75 Aligned_cols=262 Identities=10% Similarity=0.034 Sum_probs=192.3
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCC-CCeeEEEEccCCCEEEE-EeCCCeEEEEECCCCceEEEEec
Q psy4869 368 SKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHT-GAVMDLKFSTDGCHIFT-CSTDQTLAVWDLEKGQRIKKMKG 445 (2435)
Q Consensus 368 l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s-~s~Dg~I~vwd~~tg~~v~~l~~ 445 (2435)
+++++++.++++++.++.|++||..+... ...+..+. ..+..++|+||+++++. ...++.|.+||+.+++.+..+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTV-YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEE-EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcE-EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 46778889999999999999999876543 33343332 36889999999987655 45689999999999988877764
Q ss_pred c------CccccccCcccCCCeEEEEEeC-----------CCeEEEEeCCCCcc---eEeecCcccEEEEEECCCCCEEE
Q psy4869 446 H------STFVNSCDPVRRGQLLIASGSD-----------DCTVKVWDPRKKNQ---AVSMNNTYQVTSVAFNDTAECVL 505 (2435)
Q Consensus 446 h------~~~v~sv~~~~~~~~llasgs~-----------Dg~I~vwD~~~~~~---~~~~~~~~~v~sv~~sp~g~~l~ 505 (2435)
+ ...+..+.|+|++..++++... ++.|.+||+.+++. +....+...+.+++|+|+|+ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence 3 2337788999998776665543 58999999987443 34445555788999999999 66
Q ss_pred EEecCCeEEEEECCCCcEEEEEecCC-C-----------------------CEEEEEEcCCCCEE-----------EEEE
Q psy4869 506 TGGIDNDIKMWDLRTNSVVQKLRGHS-D-----------------------TVTGLSLSPDGSYI-----------LSNA 550 (2435)
Q Consensus 506 sgs~dg~V~lwD~~s~~~v~~l~~h~-~-----------------------~V~~i~~spdg~~l-----------as~s 550 (2435)
+++ +.|++||..+++.+..+..+. + ...++++++++... ....
T Consensus 163 ~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 163 VAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp EES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred Ecc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 554 449999999999888775432 0 34557777655221 1222
Q ss_pred CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC-CCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEE
Q psy4869 551 MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV-SGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDV 629 (2435)
Q Consensus 551 ~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l 629 (2435)
.++.+++|++.. ....+..++|+| +|++|+++ ++.|.+||+.+++.+..+.. ...+.++
T Consensus 241 ~~~~~~~~~~~~-----------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~ 300 (349)
T 1jmx_B 241 KTGKTHTQEFAD-----------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCV 300 (349)
T ss_dssp TTCCEEEEEEEE-----------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEE
T ss_pred cCCcEEeccccc-----------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccce
Confidence 344455544421 123567899999 99999988 89999999999998887753 3457899
Q ss_pred EEcCCCCEEEEEECCCcEEEecCC
Q psy4869 630 QFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 630 ~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+|+|++++|++++.++.|++||+.
T Consensus 301 ~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 301 AFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EECSSSSCEEEESBSSEEEEEETT
T ss_pred EECCCCCEEEEecCCCeEEEEecc
Confidence 999999988888899999999986
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-15 Score=188.36 Aligned_cols=300 Identities=11% Similarity=0.045 Sum_probs=201.8
Q ss_pred CCEEEEEEC----CCcEEEEEcC--CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEEccC--Cce--e
Q psy4869 1052 SKLLAVSLL----DTTVKIFFLD--TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD----RTVKVWGLDY--GDC--H 1117 (2435)
Q Consensus 1052 g~~Lavg~~----dg~V~i~d~~--~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~D----g~I~vWd~~t--~~~--~ 1117 (2435)
..++++|+. ++.|.+|.++ +++.......+...+..++|+||+++|++++.+ +.|.+|+++. ++. +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 345667743 4679998764 454433222266778889999999999999886 7999999865 432 3
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEeec--------ccccCeEEEEEeCCCCEEE
Q psy4869 1118 KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISLY--------GHKLPVLSLDMSYDSTLIA 1188 (2435)
Q Consensus 1118 ~~l~~h~~~V~~v~fsp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~~--------~h~~~V~~l~~s~dg~~l~ 1188 (2435)
.....+......+++ ++++|++++ .++.|.+|++.....+..+....... .+...+.+++|+|+|++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 333445566778888 778777766 57899999997544332221111111 1233468899999999776
Q ss_pred EEe-CCCcEEEEEccCCce------e-------eEeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEe
Q psy4869 1189 TGS-GDRTVKVWGLDYGDC------H-------KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLH 1253 (2435)
Q Consensus 1189 sgs-~Dg~V~iwd~~t~~~------~-------~~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~ 1253 (2435)
+++ .++.|++|++..... + .....+.....+++|+|+++++++++ .++.|.+||+...+......
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 665 478999999875431 1 11223455688999999999888887 68899999886432110000
Q ss_pred eCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee
Q psy4869 1254 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL 1333 (2435)
Q Consensus 1254 ~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs 1333 (2435)
. .. ..........++|+|||++|+++.
T Consensus 251 ~------------------------~~-----------------------------~~~~~~~~~~i~~spdg~~l~v~~ 277 (361)
T 3scy_A 251 V------------------------AA-----------------------------DTVNAQGSGDIHLSPDGKYLYASN 277 (361)
T ss_dssp E------------------------ES-----------------------------CSSCCCCEEEEEECTTSSEEEEEE
T ss_pred E------------------------ec-----------------------------CCCCCCCcccEEECCCCCEEEEEC
Confidence 0 00 000012346899999999987766
Q ss_pred cC--CeEEEEEcc--cce--EEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE--eCCCCceEEEec-ccccceEE
Q psy4869 1334 LD--TTVKIFFLD--TFK--FFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVW--GLDYGDCHKSLL-AHEDSVTG 1403 (2435)
Q Consensus 1334 ~d--G~V~v~d~~--~~k--~i~~~~~h~~~V~~la~spdg~~L~sGg-~Dg~V~iw--dl~~gk~~~~~~-~h~~~V~~ 1403 (2435)
.+ +.|.+|+++ +++ .+..+.. ...+..++|+|||++|++++ .++.|.+| |..+|++..... .+...++|
T Consensus 278 ~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~ 356 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVC 356 (361)
T ss_dssp CSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEE
T ss_pred CCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeE
Confidence 54 899999996 344 4555554 45678999999999988887 67889995 555787765442 34557889
Q ss_pred EEEe
Q psy4869 1404 VTFV 1407 (2435)
Q Consensus 1404 laf~ 1407 (2435)
|+|.
T Consensus 357 v~~~ 360 (361)
T 3scy_A 357 LKFV 360 (361)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9885
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-15 Score=192.33 Aligned_cols=265 Identities=13% Similarity=0.137 Sum_probs=190.4
Q ss_pred cCCcEEEEEECCCCCEEEEEeCC----CeEEEEecCCc---eeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEE
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGYD----RQIFIWSVYGE---CENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVW 432 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~D----g~I~iwd~~~~---~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vw 432 (2435)
|......++|+|+|++|++++.+ +.|.+|++... ...+.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66677789999999999999886 79999988642 2334444556677888888 788888776 57899999
Q ss_pred ECCCCceEEEE------ec--------cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc--------------eE
Q psy4869 433 DLEKGQRIKKM------KG--------HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ--------------AV 484 (2435)
Q Consensus 433 d~~tg~~v~~l------~~--------h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~--------------~~ 484 (2435)
++.....+..+ .+ +...+.++.|+|++..++++...++.|.+|++..... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754322111 11 1122356899999988888888899999998875431 22
Q ss_pred eecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcE--EEEEe---cCCCCEEEEEEcCCCCEEEEEECC--CcEE
Q psy4869 485 SMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRTNSV--VQKLR---GHSDTVTGLSLSPDGSYILSNAMD--NTVR 556 (2435)
Q Consensus 485 ~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s~~~--v~~l~---~h~~~V~~i~~spdg~~las~s~D--g~I~ 556 (2435)
.......+..++|+|+|+++++++ .++.|.+||+.+++. +..+. .+.....+++|+|||++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 234556788999999999888877 689999999987754 33332 344567899999999999776654 8999
Q ss_pred EEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEec-CCCeEEEE--ECCCCcEEEEec-CCCCCeeEEEEc
Q psy4869 557 IWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGS-ADKCVYIW--DTTTRRIAYKLP-GHNGSVNDVQFH 632 (2435)
Q Consensus 557 lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iw--d~~s~~~~~~l~-~h~~~V~~l~fs 632 (2435)
+|++.......+.+..+.. ...+..++|+|||++|++++ .++.|.+| |.+++++..... .+...+.||.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-----g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-----GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-----SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-----CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9999632111223333332 13567899999999888887 67899995 556777765432 255678999886
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=223.69 Aligned_cols=335 Identities=11% Similarity=0.081 Sum_probs=225.0
Q ss_pred EEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCC----eEEEEEEecCCCEEEEEeC---------CCeEEEEEccC
Q psy4869 890 ALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGS----YALSVCFVPGDRHVLVGTK---------DGRLLIVDIGA 956 (2435)
Q Consensus 890 ~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~----~v~~vafspdg~~Lavg~~---------dg~V~vwd~~s 956 (2435)
.++|+|||++++.+.++.|++||+.+++....+.... .+.+++|||||++|+.+.. ++.|++||+.+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 5899999998888888999999999998877766432 2778999999999998765 78999999999
Q ss_pred CceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 957 GEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1036 (2435)
Q Consensus 957 g~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (2435)
|+.+..... ...+..++|+||+ ..|+.+. |+.|++|++..+.......... ...+..-.....
T Consensus 100 g~~~~~~~l-~~~~~~~~~SPDG----------~~la~~~-~~~i~~~~~~~g~~~~l~~~~~-----~~~v~~g~~~~v 162 (719)
T 1z68_A 100 GEFVRGNEL-PRPIQYLCWSPVG----------SKLAYVY-QNNIYLKQRPGDPPFQITFNGR-----ENKIFNGIPDWV 162 (719)
T ss_dssp TEECCSSCC-CSSBCCEEECSST----------TCEEEEE-TTEEEEESSTTSCCEECCCCCB-----TTTEEESSCCHH
T ss_pred Cccccceec-CcccccceECCCC----------CEEEEEE-CCeEEEEeCCCCCcEEEecCCC-----cCCeEcccccce
Confidence 987321111 2468889999997 4677764 7899999986543211000000 000000000000
Q ss_pred --cccCCCEEEEEEcCCCCEEEEEECCC----------------------------------cEEEEEcCCCeEE---E-
Q psy4869 1037 --LKLEEQVLCARVSPDSKLLAVSLLDT----------------------------------TVKIFFLDTFKFF---I- 1076 (2435)
Q Consensus 1037 --~~~~~~v~~l~~spdg~~Lavg~~dg----------------------------------~V~i~d~~~~~~~---~- 1076 (2435)
-+......+++|||||++|+.+..|. .|++||+.+++.. .
T Consensus 163 ~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~ 242 (719)
T 1z68_A 163 YEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV 242 (719)
T ss_dssp HHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC
T ss_pred eeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc
Confidence 00012235899999999999987542 7889999887642 1
Q ss_pred ----EEecCCcCEEEEEEcCCCCEEEEEECCC----cEEEEE----ccCCceeEEE----eccCCCEE-----EEEEccC
Q psy4869 1077 ----SLYGHKLPVLSLDMSYDSTLIATGSGDR----TVKVWG----LDYGDCHKSL----LAHEDSVT-----GVTFVPK 1135 (2435)
Q Consensus 1077 ----~l~~h~~~V~sl~~spdg~~L~Sgs~Dg----~I~vWd----~~t~~~~~~l----~~h~~~V~-----~v~fsp~ 1135 (2435)
.+.+|...+.+++|+||++++++....+ .|.+|| ..++++...+ ..|...+. .+.|+|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 1336888899999999988777654332 488899 7777665544 35666666 8899999
Q ss_pred CCEEEE--EeCCC--cEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC-----CcEEEEEccC--C
Q psy4869 1136 THYFFT--TSKDG--RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD-----RTVKVWGLDY--G 1204 (2435)
Q Consensus 1136 ~~~l~s--~s~Dg--~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D-----g~V~iwd~~t--~ 1204 (2435)
++.|+. ...++ .|.+||+..++. .. +..+...+..+.+. +++.|+..+.+ +.+++|.+.. +
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~~~~-~~------lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTVENA-IQ------ITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCSTTC-EE------CSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred CCeEEEEEEccCCceEEEEEECCCCce-Ee------cccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 986544 44555 566777766542 22 22455567777777 78777776654 7888998764 3
Q ss_pred c-eeeEee----ccCCCEEEEEEeeCCCEEEEEE-CC--CcEEEEECCCCceE
Q psy4869 1205 D-CHKSLL----AHEDSVTGVTFVPKTHYFFTTS-KD--GRVKQWDADNFERI 1249 (2435)
Q Consensus 1205 ~-~~~~~~----~h~~~V~~i~~spd~~~lvsgs-~D--g~I~vwD~~~~~~v 1249 (2435)
. ....+. +|...+..+.|+|+++.++... .+ ..+.+||+.+.+.+
T Consensus 395 ~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 395 PPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp SCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred CCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 2 123332 2667888999999888777543 22 45778887665543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-16 Score=214.68 Aligned_cols=270 Identities=13% Similarity=0.009 Sum_probs=198.8
Q ss_pred CcCEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCceeEEEeccC-CCEEEEEEccCCCEEEEEeC---CCcEEEEeCCC-
Q psy4869 1082 KLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHKSLLAHE-DSVTGVTFVPKTHYFFTTSK---DGRVKQWDADN- 1155 (2435)
Q Consensus 1082 ~~~V~sl~~spdg~~L~Sgs~-Dg~I~vWd~~t~~~~~~l~~h~-~~V~~v~fsp~~~~l~s~s~---Dg~V~iwD~~~- 1155 (2435)
..+|.+++|+|||+.|++++. ||++.||+++.++. ..+..|. ..+..++|+|+ +.+++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999998887 99999999966654 4454555 68999999998 77777765 45566665543
Q ss_pred -cceeEEEEEEEeecccccCeEEEEEeCCCCE-EEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE
Q psy4869 1156 -FERIVTLHFFISLYGHKLPVLSLDMSYDSTL-IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1156 -~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~-l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs 1233 (2435)
......+ .....+...+|+++++. +++.+.++.+.+||+.+++...... +.. .++.|+|||+.|+.++
T Consensus 99 ~~g~~~~l-------~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 99 RPGEEQRL-------EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp STTCCEEC-------TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEE
T ss_pred CCCccccc-------cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEE
Confidence 2222222 12223446688888753 4444455556699999887654443 333 8899999999999888
Q ss_pred CC----CcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecc
Q psy4869 1234 KD----GRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1309 (2435)
Q Consensus 1234 ~D----g~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1309 (2435)
.| +.|.+||+.+.+.. .+
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~-~l--------------------------------------------------------- 190 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLR-VF--------------------------------------------------------- 190 (582)
T ss_dssp EEETTEEEEEEEETTTCCCE-EE---------------------------------------------------------
T ss_pred EcCCCCeEEEEEcCCCCCce-Ee---------------------------------------------------------
Confidence 66 56777776554321 00
Q ss_pred cccccccEEEEEecCCcceeEEeecCC--eEEEEEcccceEEEEecCCCCCeEEEE--------EecCCCEEEEEeCCCc
Q psy4869 1310 TLKLEEQVLCARVSPDSKLLAVSLLDT--TVKIFFLDTFKFFISLYGHKLPVLSLD--------MSYDSTLIATGSGDRT 1379 (2435)
Q Consensus 1310 ~~~~~~~i~~ia~spdg~~lavgs~dG--~V~v~d~~~~k~i~~~~~h~~~V~~la--------~spdg~~L~sGg~Dg~ 1379 (2435)
......+..++|+|||+.|+.+..+| .|++||+++++.. .+.+|...+..++ |+|||+++++++.|+.
T Consensus 191 -~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~ 268 (582)
T 3o4h_A 191 -DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR 268 (582)
T ss_dssp -CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred -ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc
Confidence 01134567899999999999888888 8999999998887 7778877777777 9999999999999999
Q ss_pred EEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCC---cEEEEECCC
Q psy4869 1380 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG---RVKQWDADN 1429 (2435)
Q Consensus 1380 V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg---~V~lWd~~~ 1429 (2435)
+++|++ |++.. .+.+.|.+++|+ ++.++++++.+. .|.+||...
T Consensus 269 ~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 269 SAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999999 76654 344679999999 999999888774 466666554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-15 Score=191.33 Aligned_cols=275 Identities=10% Similarity=0.101 Sum_probs=191.3
Q ss_pred EEEEEeCC--CeEEEEecC--Ccee-eEEEee-CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC-CCceEEEEecc-C
Q psy4869 376 YIASSGYD--RQIFIWSVY--GECE-NIGVMS-GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE-KGQRIKKMKGH-S 447 (2435)
Q Consensus 376 ~Lasgs~D--g~I~iwd~~--~~~~-~~~~l~-~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~-tg~~v~~l~~h-~ 447 (2435)
+|+.|++. +.|.+|++. ++.. .+.... .....+..++|+|||++|++++.+ .|.+||+. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556553 467777653 2222 122221 234578899999999999999888 99999997 77765433211 1
Q ss_pred ccccccCcccCCCe-EEEEEe-------------CCCeEEEEeCCC-CcceEeec-----CcccEEEEEECCCCCEEEEE
Q psy4869 448 TFVNSCDPVRRGQL-LIASGS-------------DDCTVKVWDPRK-KNQAVSMN-----NTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 448 ~~v~sv~~~~~~~~-llasgs-------------~Dg~I~vwD~~~-~~~~~~~~-----~~~~v~sv~~sp~g~~l~sg 507 (2435)
.....+.++|++.. +++++. .++.+.+|++.. ++....+. +...+.+++|+|+|++|+++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23667899999975 344553 689999999974 54433222 45679999999999998887
Q ss_pred ec-CCeEEEEECC-CCcEE--EEEe--cCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCCCCCceE---EEEeCcc
Q psy4869 508 GI-DNDIKMWDLR-TNSVV--QKLR--GHSDTVTGLSLSPDGSYILSNAM-DNTVRIWDIRPYVPGERCV---KVMSGHQ 577 (2435)
Q Consensus 508 s~-dg~V~lwD~~-s~~~v--~~l~--~h~~~V~~i~~spdg~~las~s~-Dg~I~lWdl~~~~~~~~~v---~~~~~h~ 577 (2435)
+. ++.|++||+. +++.. ..+. .|...+..++|+|||++|++++. +++|.+|++... .++.. ..+....
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~--~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA--THMPVYTHHSFPLIP 240 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEEEESSC
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC--CCcEEEccceEEcCC
Confidence 64 6899999998 77653 3343 24677999999999999988775 789999987631 12221 1222111
Q ss_pred ccc--cc-------CeEEEE-EcCCCCEEEEecCCC------eEEEEECC-CCcEEE---EecCCCCCeeEEEEcC---C
Q psy4869 578 HNF--EK-------NLLRCA-WSVSGLYVTAGSADK------CVYIWDTT-TRRIAY---KLPGHNGSVNDVQFHP---K 634 (2435)
Q Consensus 578 ~~~--~~-------~i~~v~-~spdg~~Lasgs~Dg------~V~iwd~~-s~~~~~---~l~~h~~~V~~l~fsp---d 634 (2435)
... .. .+..++ |+|||++|++++.+. .|.+|++. ++++.. .+..+...+..++|+| |
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence 000 01 367899 999999988776432 89999986 676544 2444666788899999 8
Q ss_pred CCEEEEEECC-CcEEEecCC
Q psy4869 635 EPIIMSASSD-KTIYLGESP 653 (2435)
Q Consensus 635 ~~~Lasgs~D-g~I~vWd~~ 653 (2435)
+++|++++.+ +.|.+|+++
T Consensus 321 g~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEE
T ss_pred CCEEEEEEcCCCeEEEEEEc
Confidence 9999999875 899999986
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=193.29 Aligned_cols=296 Identities=10% Similarity=0.052 Sum_probs=204.5
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccC-CCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCcceeEEEEE
Q psy4869 1087 SLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE-DSVTGVTFVPKTHYFF-TTSKDGRVKQWDADNFERIVTLHF 1164 (2435)
Q Consensus 1087 sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~-~~V~~v~fsp~~~~l~-s~s~Dg~V~iwD~~~~~~~~~~~~ 1164 (2435)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++.++ +...++.|.+||+.+++....+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~- 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN- 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE-
Confidence 34677888899999999999999999999888876543 2578999999998665 45568999999999877655543
Q ss_pred EEeeccc-----ccCeEEEEEeCCCCEEEEEeCC------------CcEEEEEccCCcee---eEeeccCCCEEEEEEee
Q psy4869 1165 FISLYGH-----KLPVLSLDMSYDSTLIATGSGD------------RTVKVWGLDYGDCH---KSLLAHEDSVTGVTFVP 1224 (2435)
Q Consensus 1165 ~~~~~~h-----~~~V~~l~~s~dg~~l~sgs~D------------g~V~iwd~~t~~~~---~~~~~h~~~V~~i~~sp 1224 (2435)
..+ ...+..++|+|+|+++++++.+ +.|.+||+.+++.. ..+ .+...+.+++|+|
T Consensus 83 ----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 83 ----LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD 157 (349)
T ss_dssp ----SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT
T ss_pred ----cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECC
Confidence 111 2347789999999999998865 89999999985533 333 3445688999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceee
Q psy4869 1225 KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLS 1304 (2435)
Q Consensus 1225 d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 1304 (2435)
+++ +++++ +.|.+||+.+.+.+..+....... +.. .....+.+|...
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~----------------------- 204 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNR-KGY------SAPDVLYFWPHQ----------------------- 204 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCC-TTB------CCCBCCCCCCCC-----------------------
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCC-ccc------cCccceeeecCC-----------------------
Confidence 999 66553 449999998887665543321000 000 000001111110
Q ss_pred eeecccccccccEEEEEecCCccee-----------EEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEec-CCCEEE
Q psy4869 1305 LLHTRTLKLEEQVLCARVSPDSKLL-----------AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY-DSTLIA 1372 (2435)
Q Consensus 1305 ~~~~~~~~~~~~i~~ia~spdg~~l-----------avgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~sp-dg~~L~ 1372 (2435)
...........+++++++... .+....+.+.++++ ..+...+..++|+| ||++|+
T Consensus 205 ----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~ 271 (349)
T 1jmx_B 205 ----SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIY 271 (349)
T ss_dssp ----CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEE
T ss_pred ----CcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCCEEE
Confidence 000001123456666654222 12333444554443 22556788999999 999999
Q ss_pred EEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEEEe
Q psy4869 1373 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1373 sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
++ ++.|++||+.+++.+..+..+ ..+.+++|+|++.+|++++.|+.|.+||..+.+.++.++
T Consensus 272 ~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 272 GV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 98 899999999999988776543 357799999999888888889999999999999888876
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=198.21 Aligned_cols=246 Identities=13% Similarity=0.026 Sum_probs=177.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEecCCce---------eeEE-----EeeCCCCCeeEEEEccCCCEEE----EEe
Q psy4869 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC---------ENIG-----VMSGHTGAVMDLKFSTDGCHIF----TCS 424 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~---------~~~~-----~l~~h~~~V~~l~~s~dg~~L~----s~s 424 (2435)
..++.+++++++.++++|+.++ +++|+..... .... ....|.+.|.+++|++++++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4578899999999999999988 8888753110 0000 1123667899999999999999 788
Q ss_pred CCCeEEEEECCCC--------c---eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccE
Q psy4869 425 TDQTLAVWDLEKG--------Q---RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQV 492 (2435)
Q Consensus 425 ~Dg~I~vwd~~tg--------~---~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v 492 (2435)
.|+.|++||++++ + .+..+.+|...|.+++|+|++..+|++++.|++|++||++++...... .|...|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v 195 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV 195 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence 8999999998765 2 245567899999999999997789999999999999999988655433 567899
Q ss_pred EEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCC-------CCEEEEEEcCCCCEEEE-EECCCc------EEEE
Q psy4869 493 TSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS-------DTVTGLSLSPDGSYILS-NAMDNT------VRIW 558 (2435)
Q Consensus 493 ~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~-------~~V~~i~~spdg~~las-~s~Dg~------I~lW 558 (2435)
.+++|+|+|++|++|+.||.|++||.+ ++....+..|. ..|.+++|++++.++++ ++.||. +++|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999999 66666665442 38999999999888865 445543 8999
Q ss_pred EcCCCCCC-CceEEEEeCccc---ccccCeEEEEEcCCCCEEEEec-CCCeEEEEEC
Q psy4869 559 DIRPYVPG-ERCVKVMSGHQH---NFEKNLLRCAWSVSGLYVTAGS-ADKCVYIWDT 610 (2435)
Q Consensus 559 dl~~~~~~-~~~v~~~~~h~~---~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iwd~ 610 (2435)
|++..... ......+..... ........+.+-++.+++++++ ..+.|.|+..
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 275 LLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp ECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 99854221 112222221100 1111223344446667666654 4555666654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.3e-16 Score=197.86 Aligned_cols=292 Identities=13% Similarity=0.133 Sum_probs=201.9
Q ss_pred eEecccCCcEEE-----EEECCCCCEEEEEeC-CC--eEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC
Q psy4869 356 MLLEGHGGEIFC-----SKYHPDGQYIASSGY-DR--QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ 427 (2435)
Q Consensus 356 ~~l~gH~~~V~~-----l~fspdg~~Lasgs~-Dg--~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 427 (2435)
..+..|...... .+|+|||++|+.++. +| .|.+||+.+.. ......++...+..+.|+|||++|+.++.++
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-ATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-EEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-eEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 445566666665 789999999999887 67 48888887653 2334455666666789999999999999999
Q ss_pred eEEEEECCCCceEEEEeccCccccccC--cccCCCeEEEE---------------------EeCCCeEEEEeCCCCcceE
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCD--PVRRGQLLIAS---------------------GSDDCTVKVWDPRKKNQAV 484 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~--~~~~~~~llas---------------------gs~Dg~I~vwD~~~~~~~~ 484 (2435)
.|++||+.+++....+..+...+.... +.+++..++.. ...+..|.+||+.+++...
T Consensus 103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 182 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV 182 (388)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE
T ss_pred eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE
Confidence 999999999987776666655443333 36666554422 2245789999999887766
Q ss_pred eecCcccEEEEEECC-CCCEEEEEecC------CeEEEEECCCCcEEEEEecCC--CCEEEEEEcCCCCEEEEEEC-CC-
Q psy4869 485 SMNNTYQVTSVAFND-TAECVLTGGID------NDIKMWDLRTNSVVQKLRGHS--DTVTGLSLSPDGSYILSNAM-DN- 553 (2435)
Q Consensus 485 ~~~~~~~v~sv~~sp-~g~~l~sgs~d------g~V~lwD~~s~~~v~~l~~h~--~~V~~i~~spdg~~las~s~-Dg- 553 (2435)
...+...+..++|+| +|+.|+....+ ..|+++|...++. ..+..+. ..+..+.|+|||+.|+..+. ++
T Consensus 183 l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (388)
T 3pe7_A 183 ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS 261 (388)
T ss_dssp EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCC
Confidence 666677789999999 99999877653 3788899876654 3344344 35788999999998865443 22
Q ss_pred ---cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe---------cCCCeEEEEECCCCcEEEEecC
Q psy4869 554 ---TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG---------SADKCVYIWDTTTRRIAYKLPG 621 (2435)
Q Consensus 554 ---~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg---------s~Dg~V~iwd~~s~~~~~~l~~ 621 (2435)
.|.+||+.... .+.+..+.++.+.. .......|+|||++|+.. ..+..|++||+.+++. ..+..
T Consensus 262 ~~~~l~~~d~~~g~--~~~l~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~ 337 (388)
T 3pe7_A 262 PDRFIYSADPETLE--NRQLTSMPACSHLM-SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVAR 337 (388)
T ss_dssp CCEEEEEECTTTCC--EEEEEEECCEEEEE-ECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEE
T ss_pred CcceEEEEecCCCc--eEEEEcCCCceeee-ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEecc
Confidence 39999997431 12333333311000 001113799999988854 4567899999998876 34445
Q ss_pred CCC-----------CeeEEEEcCCCCEEEEEE-CCCcEEEecCC
Q psy4869 622 HNG-----------SVNDVQFHPKEPIIMSAS-SDKTIYLGESP 653 (2435)
Q Consensus 622 h~~-----------~V~~l~fspd~~~Lasgs-~Dg~I~vWd~~ 653 (2435)
|.. .+..++|+||++.|+..+ .+|...+|.++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 338 HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 555 578899999999887666 46776776654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-15 Score=205.61 Aligned_cols=370 Identities=12% Similarity=0.119 Sum_probs=231.0
Q ss_pred EeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcC---------CeEEE
Q psy4869 31 LKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN---------GSLKT 101 (2435)
Q Consensus 31 ~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~---------G~i~i 101 (2435)
.|+|||++|+++ +|.|++||+.+++....+...... .......+++|+|||++|+.++.+ |.+.+
T Consensus 23 ~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 23 RWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFD-----EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp EECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTT-----TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred EECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhh-----hhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 678999999998 999999999887644332221111 111122358899999999999875 66789
Q ss_pred EECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEE-EecCCCcE-----------------E
Q psy4869 102 FSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHR-LSGHKGVI-----------------T 163 (2435)
Q Consensus 102 ~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~-l~gH~~~V-----------------~ 163 (2435)
||+.+++.. .+.+|.+.+..++|+|||++||.+ .|+.|.+||..++...+. ..++...+ .
T Consensus 97 ~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 97 YDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp EETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred EECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 999998754 577888999999999999999998 478999999987664432 22443333 2
Q ss_pred EEEEeecCCCcEEEEEeCCCc-EEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCC---CCCcc
Q psy4869 164 DIRFMSQPGHHFVVSSAKDTF-VKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRD---RSDID 239 (2435)
Q Consensus 164 ~v~~~~~~~~~~l~S~s~Dg~-I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~---~~~~~ 239 (2435)
.+.|+| ++..|+.++.|.+ |++|++....... .+...+..+.+.+.|.. ..+.+|++||+.+ +..+.
T Consensus 175 ~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 175 ALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp CEEECT--TSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCC
T ss_pred ceEECC--CCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcce
Confidence 367764 3445555554433 7777654222111 34445555666555432 1222466666654 21000
Q ss_pred ccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhh
Q psy4869 240 TEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRS 319 (2435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (2435)
T Consensus 246 -------------------------------------------------------------------------------- 245 (740)
T 4a5s_A 246 -------------------------------------------------------------------------------- 245 (740)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeC----CCeEEEEecCCce
Q psy4869 320 MKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGY----DRQIFIWSVYGEC 395 (2435)
Q Consensus 320 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~----Dg~I~iwd~~~~~ 395 (2435)
... +. .| ..+.+|...+..++|+|||++++.... +..|++||+.++.
T Consensus 246 -----------------~~~-l~----------~~-~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 246 -----------------SIQ-IT----------AP-ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp -----------------EEE-EC----------CC-HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred -----------------EEE-ec----------CC-ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 000 00 00 002256777889999999997766543 3479999987653
Q ss_pred -----eeEEE--eeCCCCCee-----EEEEccCCCEEE-EEeC-C--CeEEEEECCCCceEEEEeccCccccccCcccCC
Q psy4869 396 -----ENIGV--MSGHTGAVM-----DLKFSTDGCHIF-TCST-D--QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRG 459 (2435)
Q Consensus 396 -----~~~~~--l~~h~~~V~-----~l~~s~dg~~L~-s~s~-D--g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~ 459 (2435)
..... -..|.+.|. .++|+|||+.|+ ..+. + ..|++||+.+++......+ ...+..+. .+++
T Consensus 297 ~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~-~~d~ 374 (740)
T 4a5s_A 297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIE-ALTS 374 (740)
T ss_dssp TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEE-EECS
T ss_pred cccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEEE-EEeC
Confidence 11111 245666665 789999999877 6664 3 4688999987765443333 33333332 2346
Q ss_pred CeEEEEEeC----CC--eEEEEeCCCCcceEeec-----CcccEEEEEECCCCCEEEEEecC---CeEEEEECCCCcEEE
Q psy4869 460 QLLIASGSD----DC--TVKVWDPRKKNQAVSMN-----NTYQVTSVAFNDTAECVLTGGID---NDIKMWDLRTNSVVQ 525 (2435)
Q Consensus 460 ~~llasgs~----Dg--~I~vwD~~~~~~~~~~~-----~~~~v~sv~~sp~g~~l~sgs~d---g~V~lwD~~s~~~v~ 525 (2435)
..+++++.. .+ .|...++..+.....+. .......+.|+|++++++..... ..+.++|..+++.+.
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~ 454 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 666666655 23 44455555443322333 23568899999999988765443 468888988887665
Q ss_pred EEe
Q psy4869 526 KLR 528 (2435)
Q Consensus 526 ~l~ 528 (2435)
.+.
T Consensus 455 ~l~ 457 (740)
T 4a5s_A 455 VLE 457 (740)
T ss_dssp EEE
T ss_pred Eec
Confidence 554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-15 Score=206.60 Aligned_cols=351 Identities=9% Similarity=0.035 Sum_probs=232.7
Q ss_pred EEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCC-----EEEEEEcCCCCEEEEEeCC---------CCEEEEE
Q psy4869 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-----ITVIQYDPLGHRLATGSKD---------TDIVLWD 145 (2435)
Q Consensus 80 ~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~-----V~~l~f~p~g~~laSgs~D---------g~I~iWd 145 (2435)
.+.|++||.+++.+ +|.|++||+.+++....+.+|... ...++|+|||++||.++.| +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 68999999888776 999999999999998889988743 2347899999999999887 5567999
Q ss_pred ccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccc-ccccccceE-----------------E
Q psy4869 146 VVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFK-TMAAHLTEV-----------------W 207 (2435)
Q Consensus 146 ~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~-~~~~h~~~V-----------------~ 207 (2435)
+.+++.. .+..|.+.+..++|+|+ ++.|+.+ .|+.|.+||+.+|+..+ +..++...+ .
T Consensus 99 ~~~~~~~-~l~~~~~~~~~~~~SPd--G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 99 LNKRQLI-TEERIPNNTQWVTWSPV--GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp TTTTEEC-CSSCCCTTEEEEEECSS--TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCCCcEE-EcccCCCcceeeEECCC--CCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 9988743 46788889999999864 4456666 57899999999887643 223443323 2
Q ss_pred EEEEEeCCCeEEEeeCCCc-EEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceE
Q psy4869 208 GVCVMREDSYLISGSNDAE-LKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWL 286 (2435)
Q Consensus 208 ~l~~~p~~~~l~s~s~Dg~-v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~ 286 (2435)
++.|+|||++|+.++.|.+ +.+|++...... .
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~--------------------~--------------------------- 207 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE--------------------S--------------------------- 207 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCST--------------------T---------------------------
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCC--------------------C---------------------------
Confidence 4889999999998776654 777765311000 0
Q ss_pred EEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEE
Q psy4869 287 QVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIF 366 (2435)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~ 366 (2435)
+|...+.
T Consensus 208 -------------------------------------------------------------------------~~~~~~~ 214 (740)
T 4a5s_A 208 -------------------------------------------------------------------------LQYPKTV 214 (740)
T ss_dssp -------------------------------------------------------------------------CSSCEEE
T ss_pred -------------------------------------------------------------------------CCCCcce
Confidence 0111122
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEecCC---cee-eEEEee------CCCCCeeEEEEccCCCEEEEEeC----CCeEEEE
Q psy4869 367 CSKYHPDGQYIASSGYDRQIFIWSVYG---ECE-NIGVMS------GHTGAVMDLKFSTDGCHIFTCST----DQTLAVW 432 (2435)
Q Consensus 367 ~l~fspdg~~Lasgs~Dg~I~iwd~~~---~~~-~~~~l~------~h~~~V~~l~~s~dg~~L~s~s~----Dg~I~vw 432 (2435)
.++|.+.|.. ..+..|++||+.+ +.. ....+. +|...+..++|+|||+.++.... +..|++|
T Consensus 215 ~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~ 290 (740)
T 4a5s_A 215 RVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDIC 290 (740)
T ss_dssp EEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEE
T ss_pred eecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEE
Confidence 2333333321 1122688899876 421 112232 48888999999999997666543 3479999
Q ss_pred ECCCCc----eE--EEE--eccCcccc-----ccCcccCCCeEEEEEe-CCC--eEEEEeCCCCcceEeecCcccEEEEE
Q psy4869 433 DLEKGQ----RI--KKM--KGHSTFVN-----SCDPVRRGQLLIASGS-DDC--TVKVWDPRKKNQAVSMNNTYQVTSVA 496 (2435)
Q Consensus 433 d~~tg~----~v--~~l--~~h~~~v~-----sv~~~~~~~~llasgs-~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~ 496 (2435)
|+.+|+ +. ..+ .+|...+. ...|+|++..++...+ .+| .|.+||+..+...........+..+.
T Consensus 291 d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~ 370 (740)
T 4a5s_A 291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE 370 (740)
T ss_dssp EEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE
T ss_pred ECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE
Confidence 999887 11 222 45666665 6889999987763444 444 68888988776654444555666554
Q ss_pred ECCCCCEEEEEecC-----C--eEEEEECCCCcEEEEEec----CCCCEEEEEEcCCCCEEEEEECC---CcEEEEEcC
Q psy4869 497 FNDTAECVLTGGID-----N--DIKMWDLRTNSVVQKLRG----HSDTVTGLSLSPDGSYILSNAMD---NTVRIWDIR 561 (2435)
Q Consensus 497 ~sp~g~~l~sgs~d-----g--~V~lwD~~s~~~v~~l~~----h~~~V~~i~~spdg~~las~s~D---g~I~lWdl~ 561 (2435)
. ++++.|+..+.. + .|+..++..++....+.. ....+..+.|+|||++++..... ..+.+++..
T Consensus 371 ~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 371 A-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp E-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred E-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 2 346655544332 3 455556655444334432 24578899999999987754433 356666654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-14 Score=182.50 Aligned_cols=301 Identities=15% Similarity=0.079 Sum_probs=213.7
Q ss_pred CCCEEEEEEC------CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC----------CCcEEEEEccCC
Q psy4869 1051 DSKLLAVSLL------DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG----------DRTVKVWGLDYG 1114 (2435)
Q Consensus 1051 dg~~Lavg~~------dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~----------Dg~I~vWd~~t~ 1114 (2435)
+++++++... |+.|.+||..+++.+..+..+..+ .++|+||+++|+++.. ++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 5667777652 579999999999998888877666 8999999999998863 678999999999
Q ss_pred ceeEEEecc------CCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCcceeEE-EEEEEeecccccCeEEEEEeCCC-
Q psy4869 1115 DCHKSLLAH------EDSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVT-LHFFISLYGHKLPVLSLDMSYDS- 1184 (2435)
Q Consensus 1115 ~~~~~l~~h------~~~V~~v~fsp~~~~l~s~s~--Dg~V~iwD~~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~dg- 1184 (2435)
+.+..+... ......++|+|++++|+++.. ++.|.+||+.+.+.+.. +. . .....+.+.|++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-------~-~~~~~v~~~p~~~ 163 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-------A-AGCWSVIPQPNRP 163 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-------G-TTEEEEEECTTSS
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-------C-CCcceeEEcCCCC
Confidence 988887642 345678999999999998874 57899999998765443 21 1 122335566765
Q ss_pred CEEEEEeCCCcEEEEEccC-CceeeE------eeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCc
Q psy4869 1185 TLIATGSGDRTVKVWGLDY-GDCHKS------LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN 1257 (2435)
Q Consensus 1185 ~~l~sgs~Dg~V~iwd~~t-~~~~~~------~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~ 1257 (2435)
..+++.+.||.+.+|++.. ++.... +..+..++ .+.+.+++..++..+.++.+.++|+.......
T Consensus 164 ~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~------- 235 (361)
T 2oiz_A 164 RSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKV------- 235 (361)
T ss_dssp SEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEE-------
T ss_pred eeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCcee-------
Confidence 6778888999999999865 554311 11222222 22335666666666777778777775432110
Q ss_pred ccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec---
Q psy4869 1258 VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL--- 1334 (2435)
Q Consensus 1258 ~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~--- 1334 (2435)
+..|++..... . . .... + ....-++|+||++.+.+...
T Consensus 236 -----------------~~~~~~~~~~~--------~--~---~~~~-------p--~g~~~~a~~~dg~~lyv~~~~~~ 276 (361)
T 2oiz_A 236 -----------------DGPWSLLNDED--------K--A---KNWV-------P--GGYNLVGLHRASGRMYVFMHPDG 276 (361)
T ss_dssp -----------------EEEEESCCHHH--------H--H---TTCE-------E--CCSSCEEEETTTTEEEEEEESSC
T ss_pred -----------------cccccccCccc--------c--c---cccc-------c--CCeeEEEEecCCCeEEEEEccCC
Confidence 11122210000 0 0 0000 0 00112578999887777543
Q ss_pred --------CCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC--ceEEEecccccceEEE
Q psy4869 1335 --------DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG--DCHKSLLAHEDSVTGV 1404 (2435)
Q Consensus 1335 --------dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~g--k~~~~~~~h~~~V~~l 1404 (2435)
.+.|.+||.++++.+..+..+. +..++|+|||++|++++. +.|.+||..++ ++++.+..+......+
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred CcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence 3589999999999999999877 999999999999999987 99999999999 9998877776778899
Q ss_pred EEeeCCC
Q psy4869 1405 TFVPKTH 1411 (2435)
Q Consensus 1405 af~P~~~ 1411 (2435)
+|+|+|+
T Consensus 354 ~~~p~G~ 360 (361)
T 2oiz_A 354 QFHPVGG 360 (361)
T ss_dssp EECCCSC
T ss_pred EecCCCC
Confidence 9999985
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=185.66 Aligned_cols=298 Identities=14% Similarity=0.048 Sum_probs=205.5
Q ss_pred EEEcCCCeEEEEEecCCcCEEE-----EEEcCCCCEEEEEEC-CC--cEEEEEccCCceeEEEeccCCCEEEEEEccCCC
Q psy4869 1066 IFFLDTFKFFISLYGHKLPVLS-----LDMSYDSTLIATGSG-DR--TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137 (2435)
Q Consensus 1066 i~d~~~~~~~~~l~~h~~~V~s-----l~~spdg~~L~Sgs~-Dg--~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~ 1137 (2435)
..+..++..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++.......+...+..+.|+|+++
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 3456677778888878777766 889999999998887 66 388889988887766666666666778999999
Q ss_pred EEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEE--EEeCCCCEEEEE----------------------eCC
Q psy4869 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSL--DMSYDSTLIATG----------------------SGD 1193 (2435)
Q Consensus 1138 ~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l--~~s~dg~~l~sg----------------------s~D 1193 (2435)
.|+.++.++.|++||+.+++...... .+...+... .+++++.+++.. ..+
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQ------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred EEEEEeCCCeEEEEECCCCcceeeee------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 99999999999999999877654432 333334333 347899888743 234
Q ss_pred CcEEEEEccCCceeeEeeccCCCEEEEEEee-CCCEEEEEECCC------cEEEEECCCCceEEEEeeCCcccccCceEE
Q psy4869 1194 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDG------RVKQWDADNFERIVTLHFNPNVYLPLQIQV 1266 (2435)
Q Consensus 1194 g~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp-d~~~lvsgs~Dg------~I~vwD~~~~~~v~~~~~~~~~~~~~~~~l 1266 (2435)
..|++||+.+++. ..+..+...+..+.|+| +++.|+....++ .|.++|........
T Consensus 168 ~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~---------------- 230 (388)
T 3pe7_A 168 CRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK---------------- 230 (388)
T ss_dssp EEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE----------------
T ss_pred ceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE----------------
Confidence 6799999998874 44556777899999999 999888776532 34444432211000
Q ss_pred EEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec-CC----eEEEE
Q psy4869 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL-DT----TVKIF 1341 (2435)
Q Consensus 1267 v~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~-dG----~V~v~ 1341 (2435)
+ ........+..++|+|||+.|+..+. ++ .|++|
T Consensus 231 -------------l----------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (388)
T 3pe7_A 231 -------------V----------------------------KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA 269 (388)
T ss_dssp -------------S----------------------------CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred -------------e----------------------------eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence 0 00000124667889999998876553 22 39999
Q ss_pred EcccceE--EEEecCCCCC---eEEEEEecCCCEEEEE---------eCCCcEEEEeCCCCceEEEeccccc--------
Q psy4869 1342 FLDTFKF--FISLYGHKLP---VLSLDMSYDSTLIATG---------SGDRTVKVWGLDYGDCHKSLLAHED-------- 1399 (2435)
Q Consensus 1342 d~~~~k~--i~~~~~h~~~---V~~la~spdg~~L~sG---------g~Dg~V~iwdl~~gk~~~~~~~h~~-------- 1399 (2435)
|+++++. +..+.++... ...++|+|||+.|+.. ..+..|++||+.++++ ..+..|..
T Consensus 270 d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~ 348 (388)
T 3pe7_A 270 DPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGD 348 (388)
T ss_dssp CTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTB
T ss_pred ecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccc
Confidence 9988764 3333331100 1123799999988754 5567899999998875 44555554
Q ss_pred ---ceEEEEEeeCCCEEEEEe-CCCcEEEEECC
Q psy4869 1400 ---SVTGVTFVPKTHYFFTTS-KDGRVKQWDAD 1428 (2435)
Q Consensus 1400 ---~V~~laf~P~~~~laSgg-~Dg~V~lWd~~ 1428 (2435)
.+..++|+|++.+|+..+ .+|...||.++
T Consensus 349 ~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 349 RQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 578999999998887655 57777777655
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8.9e-15 Score=190.99 Aligned_cols=198 Identities=17% Similarity=0.129 Sum_probs=156.1
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-----------eEEE----EEecCCcCEEEEEEcCCCCEEE----EEE
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF-----------KFFI----SLYGHKLPVLSLDMSYDSTLIA----TGS 1101 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~-----------~~~~----~l~~h~~~V~sl~~spdg~~L~----Sgs 1101 (2435)
..++.+++++++.+|++++.++ +++|+.... .... ....|...|.+++|+|++++|+ +|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3577899999999999999887 888874311 1111 1123567899999999999999 788
Q ss_pred CCCcEEEEEccCC--------ce---eEEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeec
Q psy4869 1102 GDRTVKVWGLDYG--------DC---HKSLLAHEDSVTGVTFVPK-THYFFTTSKDGRVKQWDADNFERIVTLHFFISLY 1169 (2435)
Q Consensus 1102 ~Dg~I~vWd~~t~--------~~---~~~l~~h~~~V~~v~fsp~-~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~ 1169 (2435)
.|+.|++||++++ +. +..+.+|...|.+++|+|+ +++|++++.||.|++||+++...... ..
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~------~~ 189 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA------TL 189 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE------EE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee------cc
Confidence 8999999999765 22 3445669999999999997 78999999999999999998744322 23
Q ss_pred ccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeecc-------CCCEEEEEEeeCCCEEEEEE-CCCc----
Q psy4869 1170 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH-------EDSVTGVTFVPKTHYFFTTS-KDGR---- 1237 (2435)
Q Consensus 1170 ~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h-------~~~V~~i~~spd~~~lvsgs-~Dg~---- 1237 (2435)
.|...|.+++|+|+|++|++|+.||.|++||++ ++....+..| ...|.++.|++++.++++.+ .||.
T Consensus 190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~ 268 (434)
T 2oit_A 190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS 268 (434)
T ss_dssp CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence 688999999999999999999999999999998 6655555433 33899999999887775543 4543
Q ss_pred --EEEEECCCC
Q psy4869 1238 --VKQWDADNF 1246 (2435)
Q Consensus 1238 --I~vwD~~~~ 1246 (2435)
+++||++..
T Consensus 269 ~~v~i~~l~~~ 279 (434)
T 2oit_A 269 PDVVMALLPKK 279 (434)
T ss_dssp CEEEEEECCCT
T ss_pred CceEEEEeccC
Confidence 899999864
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=176.18 Aligned_cols=275 Identities=9% Similarity=0.099 Sum_probs=185.8
Q ss_pred EEEEEECC--CcEEEEEc--cCCceeEE--Ee-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CcceeEEEEEEEe
Q psy4869 1096 LIATGSGD--RTVKVWGL--DYGDCHKS--LL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD-NFERIVTLHFFIS 1167 (2435)
Q Consensus 1096 ~L~Sgs~D--g~I~vWd~--~t~~~~~~--l~-~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~-~~~~~~~~~~~~~ 1167 (2435)
.|+.|+.. +.|.+|++ ++++.... .. .....+..++|+|++++|++++.+ .|.+||+. +++......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~---- 78 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS---- 78 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE----
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE----
Confidence 35556553 46887776 45543222 11 233467889999999999999888 99999987 554332211
Q ss_pred ecccccCeEEEEEeCCCCE--EEEEe-------------CCCcEEEEEcc-CCceeeEee----ccCCCEEEEEEeeCCC
Q psy4869 1168 LYGHKLPVLSLDMSYDSTL--IATGS-------------GDRTVKVWGLD-YGDCHKSLL----AHEDSVTGVTFVPKTH 1227 (2435)
Q Consensus 1168 ~~~h~~~V~~l~~s~dg~~--l~sgs-------------~Dg~V~iwd~~-t~~~~~~~~----~h~~~V~~i~~spd~~ 1227 (2435)
...+ +.+.+++|+|+|++ ++++. .++.+.+|++. .++....+. .+...+.++.|+|+++
T Consensus 79 ~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 79 HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred eecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence 1111 22456889999994 45553 68999999997 466544443 2556899999999999
Q ss_pred EEEEEEC-CCcEEEEECC-CCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeee
Q psy4869 1228 YFFTTSK-DGRVKQWDAD-NFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305 (2435)
Q Consensus 1228 ~lvsgs~-Dg~I~vwD~~-~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 1305 (2435)
+|+++.. ++.|.+||+. +.+... + ....+.
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~-~-----------------------~~~~~~------------------------ 189 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVEL-V-----------------------GSVDAP------------------------ 189 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEE-E-----------------------EEEECS------------------------
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEE-e-----------------------eeEecC------------------------
Confidence 8887764 6788888876 332110 0 000000
Q ss_pred eecccccccccEEEEEecCCcceeEEeec-CCeEEEEEcc--cceEE---E---EecC----CCC------CeEEEE-Ee
Q psy4869 1306 LHTRTLKLEEQVLCARVSPDSKLLAVSLL-DTTVKIFFLD--TFKFF---I---SLYG----HKL------PVLSLD-MS 1365 (2435)
Q Consensus 1306 ~~~~~~~~~~~i~~ia~spdg~~lavgs~-dG~V~v~d~~--~~k~i---~---~~~~----h~~------~V~~la-~s 1365 (2435)
......+.++|+|||++++++.. ++.|.+|+++ ++++. . .+.. |.. .+..++ |+
T Consensus 190 ------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s 263 (365)
T 1jof_A 190 ------DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT 263 (365)
T ss_dssp ------STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC
T ss_pred ------CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC
Confidence 01234778999999999888764 7899999876 45542 1 2221 122 488999 99
Q ss_pred cCCCEEEEEeCCC------cEEEEeCC-CCceEEE---ecccccceEEEEEee---CCCEEEEEeCC-CcEEEEECCCc
Q psy4869 1366 YDSTLIATGSGDR------TVKVWGLD-YGDCHKS---LLAHEDSVTGVTFVP---KTHYFFTTSKD-GRVKQWDADNF 1430 (2435)
Q Consensus 1366 pdg~~L~sGg~Dg------~V~iwdl~-~gk~~~~---~~~h~~~V~~laf~P---~~~~laSgg~D-g~V~lWd~~~~ 1430 (2435)
|||++|++++.+. .|.+|++. +|++... ...+...+..++|+| ++++|++++.+ +.|.+|+++..
T Consensus 264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 9999988776433 89999996 6776542 333555677899999 79999988865 89999999865
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=186.04 Aligned_cols=274 Identities=14% Similarity=0.101 Sum_probs=190.3
Q ss_pred EEEEEECCCCCEEEEEeCC---CeEEEEecCCceeeEEEeeCCCCC-eeEEEEccCCCEEEEEeCCCeEEEEECCCCceE
Q psy4869 365 IFCSKYHPDGQYIASSGYD---RQIFIWSVYGECENIGVMSGHTGA-VMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs~D---g~I~iwd~~~~~~~~~~l~~h~~~-V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
+..++|+|||++|+..... ..|.+||+.++.. ..+..+... ...+.|+|||++|+.++.++.|++||+.+++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA--VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE--EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE--EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 5678899999998877543 3688888876532 223333333 334889999999999999999999999988866
Q ss_pred EEEeccCccccc-------------------cCcccCCCeEEEEE----eCCCeEEEEeCCCCcceEeecCcccEEEEEE
Q psy4869 441 KKMKGHSTFVNS-------------------CDPVRRGQLLIASG----SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAF 497 (2435)
Q Consensus 441 ~~l~~h~~~v~s-------------------v~~~~~~~~llasg----s~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~ 497 (2435)
.....+...... +.++|++..+++.. ..+..|.+||+.+++......+...+..+.|
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence 655544433222 45677665443322 4667899999998877666666677899999
Q ss_pred CC-CCCEEEEEecC------CeEEEEECCCCcEEEEEecCC--CCEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q psy4869 498 ND-TAECVLTGGID------NDIKMWDLRTNSVVQKLRGHS--DTVTGLSLSPDGSYILSNAMD-----NTVRIWDIRPY 563 (2435)
Q Consensus 498 sp-~g~~l~sgs~d------g~V~lwD~~s~~~v~~l~~h~--~~V~~i~~spdg~~las~s~D-----g~I~lWdl~~~ 563 (2435)
+| +++.|+..+.+ ..|++||+..++... +..+. ..+..+.|+|||++|+.++.+ +.|++||+..
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~- 273 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET- 273 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-
Confidence 99 78877766543 468999987765433 33232 358889999999988877654 4599999874
Q ss_pred CCCCceEEEEeCcccccccCeEEEEEcC-CCCEEEEec----------------CCCeEEEEECCCCcEEEEecCCCC--
Q psy4869 564 VPGERCVKVMSGHQHNFEKNLLRCAWSV-SGLYVTAGS----------------ADKCVYIWDTTTRRIAYKLPGHNG-- 624 (2435)
Q Consensus 564 ~~~~~~v~~~~~h~~~~~~~i~~v~~sp-dg~~Lasgs----------------~Dg~V~iwd~~s~~~~~~l~~h~~-- 624 (2435)
++........ ... +.|+| ||++|+.++ .++.|++||+.+++.. .+..|..
T Consensus 274 ---g~~~~l~~~~------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~ 342 (396)
T 3c5m_A 274 ---LENEEVMVMP------PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSW 342 (396)
T ss_dssp ---CCEEEEEECC------SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCC
T ss_pred ---CCeEEeeeCC------CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcc
Confidence 2222222111 122 88999 999888754 3478999999888753 3444444
Q ss_pred ---------CeeEEEEcCCCCEEEEEEC-CCcEEEecCC
Q psy4869 625 ---------SVNDVQFHPKEPIIMSASS-DKTIYLGESP 653 (2435)
Q Consensus 625 ---------~V~~l~fspd~~~Lasgs~-Dg~I~vWd~~ 653 (2435)
.+..++|+|+++.|+.++. ++...+|.++
T Consensus 343 ~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2667899999998887765 5665666554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-13 Score=171.35 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=197.4
Q ss_pred CCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeC----------CCeEEEEecCC
Q psy4869 324 NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGY----------DRQIFIWSVYG 393 (2435)
Q Consensus 324 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~----------Dg~I~iwd~~~ 393 (2435)
++.+.+||....... ..+..+..+ .++|+|||++|+++.. ++.|.+||...
T Consensus 30 d~~v~v~D~~t~~~~-----------------~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFL-----------------GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GCEEEEEETTTCCEE-----------------EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred cCeEEEEECCCCeEE-----------------EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 457788886543221 123334444 7899999999998863 67899999875
Q ss_pred ceeeEEEeeC------CCCCeeEEEEccCCCEEEEEeC--CCeEEEEECCCCceEEE-EeccCccccccCcccCCCeEEE
Q psy4869 394 ECENIGVMSG------HTGAVMDLKFSTDGCHIFTCST--DQTLAVWDLEKGQRIKK-MKGHSTFVNSCDPVRRGQLLIA 464 (2435)
Q Consensus 394 ~~~~~~~l~~------h~~~V~~l~~s~dg~~L~s~s~--Dg~I~vwd~~tg~~v~~-l~~h~~~v~sv~~~~~~~~lla 464 (2435)
.. ....+.. +......++++|||++|+++.. ++.|.+||+.+++.+.. +..... ..+.+.|.+...++
T Consensus 91 ~~-~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 91 LT-FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSFM 167 (361)
T ss_dssp CC-EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEEE
T ss_pred Cc-EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeEE
Confidence 33 2333321 2346778999999999998874 58999999999988877 543221 11345676667788
Q ss_pred EEeCCCeEEEEeCCC-CcceEe------ecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE--EEEEec------
Q psy4869 465 SGSDDCTVKVWDPRK-KNQAVS------MNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV--VQKLRG------ 529 (2435)
Q Consensus 465 sgs~Dg~I~vwD~~~-~~~~~~------~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~--v~~l~~------ 529 (2435)
+.+.||.+.+|+... ++.... +........+.+.+++..++..+.++.|+++|+..... +..+.-
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 899999999999865 433311 11111112333456778888888899999999976542 222221
Q ss_pred CC----CCEEEEEEcCCCCEEEEEEC-----------CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC
Q psy4869 530 HS----DTVTGLSLSPDGSYILSNAM-----------DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594 (2435)
Q Consensus 530 h~----~~V~~i~~spdg~~las~s~-----------Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~ 594 (2435)
+. .....++|+||+++++++.. +++|.+||+.. .+.+..+..+. ...++|+|||+
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t----~~~v~~i~~~~------p~~ia~spdg~ 317 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT----KQRVARIPGRD------ALSMTIDQQRN 317 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT----TEEEEEEECTT------CCEEEEETTTT
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC----CcEEEEEecCC------eeEEEECCCCC
Confidence 11 11123789999988887643 34899999883 56777776552 57899999999
Q ss_pred EEEEecCCCeEEEEECCCC--cEEEEecCCCCCeeEEEEcCCCC
Q psy4869 595 YVTAGSADKCVYIWDTTTR--RIAYKLPGHNGSVNDVQFHPKEP 636 (2435)
Q Consensus 595 ~Lasgs~Dg~V~iwd~~s~--~~~~~l~~h~~~V~~l~fspd~~ 636 (2435)
+|++++. +.|.+||..++ +++..+..+......++|+|+|+
T Consensus 318 ~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 318 LMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999887 99999999999 99999888888999999999985
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=191.43 Aligned_cols=336 Identities=11% Similarity=0.070 Sum_probs=209.2
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEE--eCCCCEEEEEccCCeeEEEEecCCCcEE---------EEEEeecCCCcE-EE-
Q psy4869 111 STFTGHKSAITVIQYDPLGHRLATG--SKDTDIVLWDVVAECGLHRLSGHKGVIT---------DIRFMSQPGHHF-VV- 177 (2435)
Q Consensus 111 ~~l~gH~~~V~~l~f~p~g~~laSg--s~Dg~I~iWd~~~~~~~~~l~gH~~~V~---------~v~~~~~~~~~~-l~- 177 (2435)
..+.+|...|..++|++++-+++++ +.|+...||..........+.+|...|. ...|+.++++.. |+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3567899999999999887777777 6688999999755556677788887777 677763233344 44
Q ss_pred EEeCCCcEEEEecc--CCcccccccc-----ccceEEEEEEEeCCCeEEEeeCC----------CcEEEEEcCCCCCccc
Q psy4869 178 SSAKDTFVKIWDAD--TGDCFKTMAA-----HLTEVWGVCVMREDSYLISGSND----------AELKVWNVRDRSDIDT 240 (2435)
Q Consensus 178 S~s~Dg~I~iWd~~--tg~~~~~~~~-----h~~~V~~l~~~p~~~~l~s~s~D----------g~v~vwdl~~~~~~~~ 240 (2435)
+...+..|.+||+. .+.....+.. |...+..++|+|||+.|+.++.| ..|++||+.+.....
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 175 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD- 175 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC-
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc-
Confidence 44446667777765 3033455544 67889999999999999988876 355555554210000
Q ss_pred cchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhc
Q psy4869 241 EDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSM 320 (2435)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (2435)
.
T Consensus 176 -----~-------------------------------------------------------------------------- 176 (662)
T 3azo_A 176 -----R-------------------------------------------------------------------------- 176 (662)
T ss_dssp -----G--------------------------------------------------------------------------
T ss_pred -----C--------------------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCeEEEEeCccceeeeeecccccCccccccceeEec-ccCCcEEEEEECCCCCEEEEEeCC--------CeEEEEec
Q psy4869 321 KRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLE-GHGGEIFCSKYHPDGQYIASSGYD--------RQIFIWSV 391 (2435)
Q Consensus 321 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~-gH~~~V~~l~fspdg~~Lasgs~D--------g~I~iwd~ 391 (2435)
.. ...+. .|...+..++|+|||++|+.++.+ ..|++||+
T Consensus 177 --------------~~------------------~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~ 224 (662)
T 3azo_A 177 --------------SA------------------VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARV 224 (662)
T ss_dssp --------------GG------------------SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEE
T ss_pred --------------Cc------------------eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEE
Confidence 00 00111 233456678899999999988755 37999999
Q ss_pred C-Cc--eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC--eEEEEECCCCceEEEEeccCcc--------ccccCcccC
Q psy4869 392 Y-GE--CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ--TLAVWDLEKGQRIKKMKGHSTF--------VNSCDPVRR 458 (2435)
Q Consensus 392 ~-~~--~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg--~I~vwd~~tg~~v~~l~~h~~~--------v~sv~~~~~ 458 (2435)
. ++ ........+|...+..++|+|||++++++..++ .|.+||+.+++.......+... +..+.|+++
T Consensus 225 ~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 225 TEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp CTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTT
T ss_pred CCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCC
Confidence 8 33 123334455678999999999999777777788 6777777677655444433322 334555566
Q ss_pred CCeEEEEEeCCCeEEEE--eCCCCcceEee-cCcccEEEE-EECCCCCEEEEEecCC--eEEEEECCCCcEEEEEecCCC
Q psy4869 459 GQLLIASGSDDCTVKVW--DPRKKNQAVSM-NNTYQVTSV-AFNDTAECVLTGGIDN--DIKMWDLRTNSVVQKLRGHSD 532 (2435)
Q Consensus 459 ~~~llasgs~Dg~I~vw--D~~~~~~~~~~-~~~~~v~sv-~~sp~g~~l~sgs~dg--~V~lwD~~s~~~v~~l~~h~~ 532 (2435)
+ .+++++.. +.+++| |+..++ +..+ .+...+..+ +++.+.-++++++.+. .|+++|+.+++.......|..
T Consensus 305 ~-~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~ 381 (662)
T 3azo_A 305 G-LIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTD 381 (662)
T ss_dssp S-CEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCC
T ss_pred C-EEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcc
Confidence 5 56777777 999999 555554 3444 344556666 4443322333344443 577778888876554445544
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 533 ~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
.+....+.+.....+.+..+..|..|-..
T Consensus 382 ~~~~~~~~~~~~~~~~~~dg~~i~~~~~~ 410 (662)
T 3azo_A 382 PVDPAYYPEPQIRTFTAPDGREIHAHIYP 410 (662)
T ss_dssp SSCGGGSCCCEEEEEECTTSCEEEEEEEC
T ss_pred cCCccccCcceEEEEEcCCCCEEEEEEEC
Confidence 33333333333333333233456555544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-13 Score=190.19 Aligned_cols=290 Identities=10% Similarity=0.034 Sum_probs=200.8
Q ss_pred EecccCCcEEEEEECCCCCEEEEE--eCCCeEEEEecCCceeeEEEeeCCCCCee---------EEEEc--cCCCE-EEE
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASS--GYDRQIFIWSVYGECENIGVMSGHTGAVM---------DLKFS--TDGCH-IFT 422 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasg--s~Dg~I~iwd~~~~~~~~~~l~~h~~~V~---------~l~~s--~dg~~-L~s 422 (2435)
.+.+|...|..++|++++-+++.. +.++...||...... ....+..|...+. ...|+ |||++ |+.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-CcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 467899999999999887777877 668899999864322 2345566666666 66676 99998 776
Q ss_pred EeC-CCeEEEEECC--C-CceEEEEec-----cCccccccCcccCCCeEEEEEeCC----------CeEEEEeCCC----
Q psy4869 423 CST-DQTLAVWDLE--K-GQRIKKMKG-----HSTFVNSCDPVRRGQLLIASGSDD----------CTVKVWDPRK---- 479 (2435)
Q Consensus 423 ~s~-Dg~I~vwd~~--t-g~~v~~l~~-----h~~~v~sv~~~~~~~~llasgs~D----------g~I~vwD~~~---- 479 (2435)
++. +..|.+|++. . ++ ...+.. |...+..++|+|++..++.+ +.| ..|.+||+..
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCM-AEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEE-EEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEE-EecccCCCCCCceeEEEEEECCCCccc
Confidence 654 5567777765 2 43 455555 66678889999999766554 444 5899999988
Q ss_pred --CcceEee-cCcccEEEEEECCCCCEEEEEecC--------CeEEEEECC-CC---cEEEEEecCCCCEEEEEEcCCCC
Q psy4869 480 --KNQAVSM-NNTYQVTSVAFNDTAECVLTGGID--------NDIKMWDLR-TN---SVVQKLRGHSDTVTGLSLSPDGS 544 (2435)
Q Consensus 480 --~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~d--------g~V~lwD~~-s~---~~v~~l~~h~~~V~~i~~spdg~ 544 (2435)
+...... .+...+..++|+|||++|+.++.+ ..|++||+. ++ +......+|...+..+.|+|||+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 5554444 445678889999999999988755 379999999 57 44444456678999999999999
Q ss_pred EEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc----cccCeEEEEEcCCCCEEEEecCCCeEEEE--ECCCCcEEEE
Q psy4869 545 YILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN----FEKNLLRCAWSVSGLYVTAGSADKCVYIW--DTTTRRIAYK 618 (2435)
Q Consensus 545 ~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~----~~~~i~~v~~spdg~~Lasgs~Dg~V~iw--d~~s~~~~~~ 618 (2435)
++++++.|+..+||.+... .++.......+... ....+..++|+|+++++++++. +.++|| |...++ +..
T Consensus 255 l~~~~~~~~~~~l~~~~~~--~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~ 330 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPA--TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVD 330 (662)
T ss_dssp EEEEECTTSSCEEEEECTT--TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEE
T ss_pred EEEEECCCCCeEEEEEECC--CCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEE
Confidence 8888888885444444311 22333222222110 0011456889999999999998 999999 665565 577
Q ss_pred ecCCCCCeeEE-EEcCCCCEEEEEECCCcEEEecCC
Q psy4869 619 LPGHNGSVNDV-QFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 619 l~~h~~~V~~l-~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+..|...+..+ ++.++.-++++++.+....+|.++
T Consensus 331 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 331 AAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp CCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred ecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 88888888877 655444455566666555555443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=178.36 Aligned_cols=301 Identities=14% Similarity=0.035 Sum_probs=192.8
Q ss_pred EEEcCCCeEEEEEecCCcC-----EEEEEEcCCCCEEEEEECC---CcEEEEEccCCceeEEEeccCCCEEEEEEccCCC
Q psy4869 1066 IFFLDTFKFFISLYGHKLP-----VLSLDMSYDSTLIATGSGD---RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137 (2435)
Q Consensus 1066 i~d~~~~~~~~~l~~h~~~-----V~sl~~spdg~~L~Sgs~D---g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~ 1137 (2435)
..|..+++.+..+..+... +..++|+|||++|+..... ..|.+||+.+++.......+......+.|+|+++
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 4456677666666554333 6778999999998877543 3688889888765443333332233478999999
Q ss_pred EEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEE-------------------EEEeCCCCEEEEE-----eCC
Q psy4869 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLS-------------------LDMSYDSTLIATG-----SGD 1193 (2435)
Q Consensus 1138 ~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~-------------------l~~s~dg~~l~sg-----s~D 1193 (2435)
.|+.++.++.|++||+..++...... .+...... +.|+|+++.++.. ..+
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~ 167 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYT------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT 167 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEe------cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence 99999999999999998776443322 11111111 3456777766544 356
Q ss_pred CcEEEEEccCCceeeEeeccCCCEEEEEEee-CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECC
Q psy4869 1194 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGD 1272 (2435)
Q Consensus 1194 g~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp-d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d 1272 (2435)
..|++||+.+++..... .+...+..+.|+| +++.|+..+.++. + ...
T Consensus 168 ~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~----~---------------------------~~~ 215 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPH----D---------------------------LVD 215 (396)
T ss_dssp EEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCS----S---------------------------SCS
T ss_pred ceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCC----C---------------------------CCC
Confidence 68999999988754443 6777899999999 7877776653221 0 000
Q ss_pred CeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC-----CeEEEEEcccce
Q psy4869 1273 KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD-----TTVKIFFLDTFK 1347 (2435)
Q Consensus 1273 ~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d-----G~V~v~d~~~~k 1347 (2435)
..|.+|++..... . .+ ........+..++|+|||++|+.++.+ +.|++||+.+++
T Consensus 216 ~~l~~~d~~~~~~--------~----------~l--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 216 ARMWLVNEDGSNV--------R----------KI--KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp CCCEEEETTSCCC--------E----------ES--SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred ceEEEEECCCCce--------e----------Ee--eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 1233333321000 0 00 000012346778999999998887654 459999998876
Q ss_pred EEEEecCCCCCeEEEEEec-CCCEEEEEe----------------CCCcEEEEeCCCCceEEEeccccc-----------
Q psy4869 1348 FFISLYGHKLPVLSLDMSY-DSTLIATGS----------------GDRTVKVWGLDYGDCHKSLLAHED----------- 1399 (2435)
Q Consensus 1348 ~i~~~~~h~~~V~~la~sp-dg~~L~sGg----------------~Dg~V~iwdl~~gk~~~~~~~h~~----------- 1399 (2435)
........ ... +.|+| ||++|+.++ .+..|++||+.+++.. .+..|..
T Consensus 276 ~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~ 351 (396)
T 3c5m_A 276 NEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQI 351 (396)
T ss_dssp EEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSST
T ss_pred eEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccC
Confidence 54332211 123 89999 999888765 3478999999988754 3444443
Q ss_pred ceEEEEEeeCCCEEEEEeC-CCcEEEEECC
Q psy4869 1400 SVTGVTFVPKTHYFFTTSK-DGRVKQWDAD 1428 (2435)
Q Consensus 1400 ~V~~laf~P~~~~laSgg~-Dg~V~lWd~~ 1428 (2435)
.+..++|+|++..|+.++. ++...||.++
T Consensus 352 ~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 352 THPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp TCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2677899999988887664 5666666544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-11 Score=162.60 Aligned_cols=331 Identities=12% Similarity=0.022 Sum_probs=234.9
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEcc--CCceeEEEeccCCCE
Q psy4869 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD--YGDCHKSLLAHEDSV 1127 (2435)
Q Consensus 1050 pdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~--t~~~~~~l~~h~~~V 1127 (2435)
+.+.++++...++.|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.|.+||+. +++.+..+.... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 33344445555799999999999999888743 356799999999999999999999999995 888888876533 46
Q ss_pred EEEEEc----cCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEe-ec---cc-ccCeEEEEEeCCCCEEE-EEeCCCcE
Q psy4869 1128 TGVTFV----PKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFIS-LY---GH-KLPVLSLDMSYDSTLIA-TGSGDRTV 1196 (2435)
Q Consensus 1128 ~~v~fs----p~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~-~~---~h-~~~V~~l~~s~dg~~l~-sgs~Dg~V 1196 (2435)
..++|+ |+++++++++ .++.|.++|..+.+.+..+..... .. .| ...+..+..++++..++ ....+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 799999 6999888766 458999999999888776642111 00 01 22677888888766544 44567999
Q ss_pred EEEEccCCceeeEe-eccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEee-CCcccccCceEEEEEECCC
Q psy4869 1197 KVWGLDYGDCHKSL-LAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHF-NPNVYLPLQIQVVTGGGDK 1273 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~-~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~-~~~~~~~~~~~lv~g~~d~ 1273 (2435)
.++|....+.+... ........++.|+|++++++++. .++.|.++|+.+.+.+..+.. ...
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~---------------- 386 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT---------------- 386 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS----------------
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC----------------
Confidence 99998875433221 13345677899999999988877 678899999988765443322 110
Q ss_pred eEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCC-cceeEEee-cCCeEEEEEccc------
Q psy4869 1274 SVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD-SKLLAVSL-LDTTVKIFFLDT------ 1345 (2435)
Q Consensus 1274 ~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spd-g~~lavgs-~dG~V~v~d~~~------ 1345 (2435)
++.+....+ +.|+ +..++++. .++.|.++|.++
T Consensus 387 --------------------------------------Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~ 427 (567)
T 1qks_A 387 --------------------------------------PHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN 427 (567)
T ss_dssp --------------------------------------BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred --------------------------------------CCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc
Confidence 011111111 4676 44455553 468999999987
Q ss_pred -ceEEEEecCCCCCeEEEEEecCCCEEEEEeC-------CCcEEEEeCCCC-----c-eEEEec--------ccccceEE
Q psy4869 1346 -FKFFISLYGHKLPVLSLDMSYDSTLIATGSG-------DRTVKVWGLDYG-----D-CHKSLL--------AHEDSVTG 1403 (2435)
Q Consensus 1346 -~k~i~~~~~h~~~V~~la~spdg~~L~sGg~-------Dg~V~iwdl~~g-----k-~~~~~~--------~h~~~V~~ 1403 (2435)
.+.+..+......-.-+..+||+++|.+... .+.|.++|+.+. . .+..+. .....+..
T Consensus 428 ~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (567)
T 1qks_A 428 AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQ 507 (567)
T ss_dssp BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEE
T ss_pred cCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEe
Confidence 7788888865444455778999999988663 469999999876 2 222232 12347899
Q ss_pred EEEeeCCCEE-EEEe----CCCcEEEEECCCceeEEEEe
Q psy4869 1404 VTFVPKTHYF-FTTS----KDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1404 laf~P~~~~l-aSgg----~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
++|+|+|..+ +|.. .++.|.++|..+.+.++.++
T Consensus 508 ~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 508 GEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 9999999655 4533 37999999999999888776
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-12 Score=157.04 Aligned_cols=239 Identities=11% Similarity=0.208 Sum_probs=181.3
Q ss_pred CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEec------cCccccccCcccCCCeEEEEEe-CCCeEEEE
Q psy4869 403 GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKG------HSTFVNSCDPVRRGQLLIASGS-DDCTVKVW 475 (2435)
Q Consensus 403 ~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~------h~~~v~sv~~~~~~~~llasgs-~Dg~I~vw 475 (2435)
++-..+.+++++++++++++...++.|++||.+ ++.+..+.. |...+..+++.+.+..++++.. .++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455778999999999988888889999999986 666666642 3345667777434445666554 38899999
Q ss_pred eCCCCcceEeec--CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEe--cCCCCEEEEEEcCCCCEEEEEEC
Q psy4869 476 DPRKKNQAVSMN--NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR--GHSDTVTGLSLSPDGSYILSNAM 551 (2435)
Q Consensus 476 D~~~~~~~~~~~--~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~--~h~~~V~~i~~spdg~~las~s~ 551 (2435)
| ..++.+..+. ....+..++++++|+++++...++.|++||.. ++.+..+. .+...+.+|+++++|+++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 5555555553 33568999999999988877788999999964 56666664 45567899999999998888888
Q ss_pred CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC-eEEEEECCCCcEEEEecCCCC--CeeE
Q psy4869 552 DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK-CVYIWDTTTRRIAYKLPGHNG--SVND 628 (2435)
Q Consensus 552 Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg-~V~iwd~~s~~~~~~l~~h~~--~V~~ 628 (2435)
++.|++||.. .+.+..+..+.. ...+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.+
T Consensus 184 ~~~i~~~~~~-----g~~~~~~~~~g~--~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 184 AHCVKVFNYE-----GQYLRQIGGEGI--TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD 255 (286)
T ss_dssp GTEEEEEETT-----CCEEEEESCTTT--SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred CCEEEEEcCC-----CCEEEEEccCCc--cCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCccee
Confidence 9999999975 344555543211 13578899999999999988886 9999995 5677776655443 4789
Q ss_pred EEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 629 VQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 629 l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
++|+|+++++++ +.|+.|++|++.
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECS
T ss_pred EEECCCCcEEEE-CCCCeEEEEEcc
Confidence 999999987776 679999999985
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-12 Score=161.62 Aligned_cols=272 Identities=11% Similarity=0.058 Sum_probs=194.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM 443 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l 443 (2435)
.|.++.|++++..++..+.++.++.|.- .....+..+...+.+++|+++|++++++..++.|.+||.++++.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTITA----EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEEC----EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred ccceeeecCCccceeEEeecccCccccc----ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 3566788888877777778889999931 234456677778899999999997778888999999999888766555
Q ss_pred eccCccccccCcccCCCeEEEEEeCC----CeEEEEeCCCCcceEee---cCcccEEEEEECCCCCEEEEEec------C
Q psy4869 444 KGHSTFVNSCDPVRRGQLLIASGSDD----CTVKVWDPRKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGI------D 510 (2435)
Q Consensus 444 ~~h~~~v~sv~~~~~~~~llasgs~D----g~I~vwD~~~~~~~~~~---~~~~~v~sv~~sp~g~~l~sgs~------d 510 (2435)
..+...+.++.+.+++. ++++...+ +.|.+||...+.....+ .....+..++++|+|+++++... .
T Consensus 83 ~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp ECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 45667788899988875 45555555 68999999877654332 23457899999999987776653 3
Q ss_pred CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCCCCCceEEEEe---CcccccccCeEE
Q psy4869 511 NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILS-NAMDNTVRIWDIRPYVPGERCVKVMS---GHQHNFEKNLLR 586 (2435)
Q Consensus 511 g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las-~s~Dg~I~lWdl~~~~~~~~~v~~~~---~h~~~~~~~i~~ 586 (2435)
+.|+.||..+++... +..+...+.+++|+|||+.|+. .+.++.|.+||++.. ...+..+. .........+..
T Consensus 162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~---g~~~~~~~~~~~~~~~~~~~~~~ 237 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD---GVTIQPFGATIPYYFTGHEGPDS 237 (333)
T ss_dssp EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT---SSSEEEEEEEEEEECCSSSEEEE
T ss_pred ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC---CcCcccccceEEEecCCCCCCCc
Confidence 678888877665443 3233446889999999986654 456899999998631 11111110 000000124677
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCC------CeeEEEEcCCCCEEEEEECCC
Q psy4869 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNG------SVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 587 v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~------~V~~l~fspd~~~Lasgs~Dg 645 (2435)
++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+|+++.|+.++.++
T Consensus 238 i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 238 CCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred eEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 999999998888888899999998 5677666654433 689999999988777666653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.1e-12 Score=153.82 Aligned_cols=241 Identities=15% Similarity=0.217 Sum_probs=180.5
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee------CCCCCeeEEEEc-cCCCEEEEEeC-CCeEEE
Q psy4869 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS------GHTGAVMDLKFS-TDGCHIFTCST-DQTLAV 431 (2435)
Q Consensus 360 gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~------~h~~~V~~l~~s-~dg~~L~s~s~-Dg~I~v 431 (2435)
+|-....+++++++|+++++...++.|++||..... ...+. +|...+..++++ +++..+++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 566778999999999999988899999999987532 22232 345678999994 66655555533 789999
Q ss_pred EECCCCceEEEEec-cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec---CcccEEEEEECCCCCEEEEE
Q psy4869 432 WDLEKGQRIKKMKG-HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN---NTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 432 wd~~tg~~v~~l~~-h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~---~~~~v~sv~~sp~g~~l~sg 507 (2435)
|| .+++.+..+.. +...+..+++.+++. ++++...++.|.+||.. ++....+. ....+..++++++|+++++.
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 99 57777776643 345677888888874 66777778999999965 44444442 33468999999999988777
Q ss_pred ecCCeEEEEECCCCcEEEEEecC--CCCEEEEEEcCCCCEEEEEECCC-cEEEEEcCCCCCCCceEEEEeCcccccccCe
Q psy4869 508 GIDNDIKMWDLRTNSVVQKLRGH--SDTVTGLSLSPDGSYILSNAMDN-TVRIWDIRPYVPGERCVKVMSGHQHNFEKNL 584 (2435)
Q Consensus 508 s~dg~V~lwD~~s~~~v~~l~~h--~~~V~~i~~spdg~~las~s~Dg-~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i 584 (2435)
..++.|++||. +++.+..+..+ ...+.+|+++++|+++++...++ .|.+||.. .+.+..+..+.. ...+
T Consensus 182 ~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-----g~~~~~~~~~~~--~~~~ 253 (286)
T 1q7f_A 182 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-----GQLISALESKVK--HAQC 253 (286)
T ss_dssp GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-----SCEEEEEEESSC--CSCE
T ss_pred CCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-----CCEEEEEcccCC--CCcc
Confidence 78999999997 45666677543 36789999999999888888886 99999954 455555554321 1246
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q psy4869 585 LRCAWSVSGLYVTAGSADKCVYIWDTTTRR 614 (2435)
Q Consensus 585 ~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~ 614 (2435)
..++++|+|+++++ +.|+.|++|+.....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 78999999987777 569999999986543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-11 Score=157.96 Aligned_cols=330 Identities=13% Similarity=0.077 Sum_probs=227.2
Q ss_pred CcEEEEec-CCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEcc--CCceeecccccccceeEE
Q psy4869 897 NLALVSAC-ASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG--AGEILEDIPAHSQELWSV 973 (2435)
Q Consensus 897 g~~la~g~-~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~--sg~~v~~~~~h~~~V~sv 973 (2435)
+.++++.. ++.|.|||..+++.+..+..+..+..+.|+|||++|+++..++.|.+||+. +++++..+..... ...+
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~i 245 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSI 245 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-Ccee
Confidence 33444433 589999999999999999988888899999999999999999999999995 8888888876443 4789
Q ss_pred EEe----cCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEc
Q psy4869 974 AML----PDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1049 (2435)
Q Consensus 974 ~~s----~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 1049 (2435)
+|+ |++ ...+++...++.|.++|....+.... +...... .....+.....+..+.++
T Consensus 246 a~s~~~~pDG---------k~l~v~n~~~~~v~ViD~~t~~~~~~-------i~~~~~~---~~~~~~~p~~rva~i~~s 306 (567)
T 1qks_A 246 ETSKMEGWED---------KYAIAGAYWPPQYVIMDGETLEPKKI-------QSTRGMT---YDEQEYHPEPRVAAILAS 306 (567)
T ss_dssp EECCSTTCTT---------TEEEEEEEETTEEEEEETTTCCEEEE-------EECCEEC---TTTCCEESCCCEEEEEEC
T ss_pred EEccccCCCC---------CEEEEEEccCCeEEEEECCCCcEEEE-------Eeccccc---cccccccCCCceEEEEEc
Confidence 999 576 12444555579999999654332110 0000000 000001112367889999
Q ss_pred CCCCEEEEEEC-CCcEEEEEcCCCeEEEEE-ecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEec----
Q psy4869 1050 PDSKLLAVSLL-DTTVKIFFLDTFKFFISL-YGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLA---- 1122 (2435)
Q Consensus 1050 pdg~~Lavg~~-dg~V~i~d~~~~~~~~~l-~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~---- 1122 (2435)
+++..+++... +|.|.++|..+.+.+... ........++.|+|++++|+++. .++.|.++|+.+++.+..+..
T Consensus 307 ~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 307 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 98877666654 599999998765432221 12334577889999999887765 578999999999988777654
Q ss_pred -cCCCEEEEEEccCCCEEE-EEe-CCCcEEEEeCCC-------cceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeC
Q psy4869 1123 -HEDSVTGVTFVPKTHYFF-TTS-KDGRVKQWDADN-------FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG 1192 (2435)
Q Consensus 1123 -h~~~V~~v~fsp~~~~l~-s~s-~Dg~V~iwD~~~-------~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 1192 (2435)
|....-. -++|++..++ +.. .++.|.++|... .+.+..+. .....-..+..+|+++++++...
T Consensus 387 Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~------~~g~g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 387 PHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP------ALGGGSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp BCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE------CSCSCCCCEECCTTCSEEEEECT
T ss_pred CCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe------cCCCCCEEEEeCCCCCeEEEecC
Confidence 3321111 2577755454 443 468999999887 34444432 22233345678999999998763
Q ss_pred -------CCcEEEEEccCC-----cee-eEee--------ccCCCEEEEEEeeCCCEEEEEEC-----CCcEEEEECCCC
Q psy4869 1193 -------DRTVKVWGLDYG-----DCH-KSLL--------AHEDSVTGVTFVPKTHYFFTTSK-----DGRVKQWDADNF 1246 (2435)
Q Consensus 1193 -------Dg~V~iwd~~t~-----~~~-~~~~--------~h~~~V~~i~~spd~~~lvsgs~-----Dg~I~vwD~~~~ 1246 (2435)
.+.|.++|+.+. ... ..+. .....+..+.|+|+|+.+..+.+ ++.|.++|.++.
T Consensus 460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 358999999877 211 2232 12457899999999999888755 789999999998
Q ss_pred ceEEEEe
Q psy4869 1247 ERIVTLH 1253 (2435)
Q Consensus 1247 ~~v~~~~ 1253 (2435)
+.+..+.
T Consensus 540 ~~~~~i~ 546 (567)
T 1qks_A 540 ELKHVIK 546 (567)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 8777665
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-12 Score=160.75 Aligned_cols=241 Identities=13% Similarity=0.177 Sum_probs=186.0
Q ss_pred CCCeeEEEEccCCCEEEEEeCC------------------------CeEEEEECCCCceEEEEe-ccCccccccCcccCC
Q psy4869 405 TGAVMDLKFSTDGCHIFTCSTD------------------------QTLAVWDLEKGQRIKKMK-GHSTFVNSCDPVRRG 459 (2435)
Q Consensus 405 ~~~V~~l~~s~dg~~L~s~s~D------------------------g~I~vwd~~tg~~v~~l~-~h~~~v~sv~~~~~~ 459 (2435)
-+.+.+|+++++|+++++...+ +.|.+||..+++.+..+. ++......+++.+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3679999999999888887777 479999999898876664 344567788888888
Q ss_pred CeEEEEEeCCCeEEEEeCCCCc-ceEeec----------CcccEEEEEECC-CCCEEEEEe-cCCeEEEEECCCCcEEEE
Q psy4869 460 QLLIASGSDDCTVKVWDPRKKN-QAVSMN----------NTYQVTSVAFND-TAECVLTGG-IDNDIKMWDLRTNSVVQK 526 (2435)
Q Consensus 460 ~~llasgs~Dg~I~vwD~~~~~-~~~~~~----------~~~~v~sv~~sp-~g~~l~sgs-~dg~V~lwD~~s~~~v~~ 526 (2435)
. ++++...++.|++||..... .+..+. +...+..++++| +|+++++.+ .++.|++|| .+++.+..
T Consensus 103 ~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 103 N-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp C-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred C-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 6 77788889999999986542 344332 223688999999 788887776 699999999 67777777
Q ss_pred EecCC----------CCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC----
Q psy4869 527 LRGHS----------DTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV---- 591 (2435)
Q Consensus 527 l~~h~----------~~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp---- 591 (2435)
+.... ....+|+++|+ |+++++...+++|++||.. .++.+..+.... ....+..++|+|
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~----~G~~~~~~~~~~--~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD----TKEFVREIKHAS--FGRNVFAISYIPGFLF 254 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT----TCCEEEEECCTT--TTTCEEEEEEETTEEE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC----CCcEEEEEeccc--cCCCcceeeecCCEEE
Confidence 74322 34899999999 7777777789999999987 356666664332 224677889999
Q ss_pred --CCCEEEEecCCCeEEEEECCCCcEEEEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 592 --SGLYVTAGSADKCVYIWDTTTRRIAYKLP---GHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 592 --dg~~Lasgs~Dg~V~iwd~~s~~~~~~l~---~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+|+.+++...+..|++||..+++.+..+. ++...+..|+++|++.++++...++.|++|+++
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 33333333445689999999999998884 677889999999999888888899999999986
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-12 Score=157.24 Aligned_cols=252 Identities=13% Similarity=0.071 Sum_probs=186.7
Q ss_pred CCCEEEEEEccCCCEEEEEeCC------------------------CcEEEEeCCCcceeEEEEEEEeecccccCeEEEE
Q psy4869 1124 EDSVTGVTFVPKTHYFFTTSKD------------------------GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLD 1179 (2435)
Q Consensus 1124 ~~~V~~v~fsp~~~~l~s~s~D------------------------g~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~ 1179 (2435)
-..+.+|+++++++++++...+ +.|.+||..+++....+. ..+......++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-----~~~~~~p~gia 97 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-----KNLFYLPHGLS 97 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-----TTTCSSEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-----CCccCCceEEE
Confidence 3578999999999988887776 479999998776543321 23445788999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEccCCc-eeeEe---------eccCCCEEEEEEee-CCCEEEEEE-CCCcEEEEECCCCc
Q psy4869 1180 MSYDSTLIATGSGDRTVKVWGLDYGD-CHKSL---------LAHEDSVTGVTFVP-KTHYFFTTS-KDGRVKQWDADNFE 1247 (2435)
Q Consensus 1180 ~s~dg~~l~sgs~Dg~V~iwd~~t~~-~~~~~---------~~h~~~V~~i~~sp-d~~~lvsgs-~Dg~I~vwD~~~~~ 1247 (2435)
++++|+++++...++.|++||..... .+..+ ..+......|+++| +++++++.+ .++.|++||. ...
T Consensus 98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~ 176 (329)
T 3fvz_A 98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGK 176 (329)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSC
T ss_pred ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCC
Confidence 99999988888888999999986442 45555 23445789999999 788777776 6899999984 333
Q ss_pred eEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCC-c
Q psy4869 1248 RIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD-S 1326 (2435)
Q Consensus 1248 ~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spd-g 1326 (2435)
.+..+.... .+ ... ....-.....++++|+ |
T Consensus 177 ~~~~~~~~g---------------~~---------------------~~~------------~~~~~~~p~gia~d~~~g 208 (329)
T 3fvz_A 177 FVTQWGEES---------------SG---------------------SSP------------RPGQFSVPHSLALVPHLD 208 (329)
T ss_dssp EEEEECEEC---------------CS---------------------SSC------------CTTEESCEEEEEEETTTT
T ss_pred EEEEeccCC---------------CC---------------------CCC------------CCcccCCCcEEEEECCCC
Confidence 322221000 00 000 0000124678999999 8
Q ss_pred ceeEEeecCCeEEEEEcccceEEEEec--CCCCCeEEEEEec------CCCEEEEEeCCCcEEEEeCCCCceEEEe---c
Q psy4869 1327 KLLAVSLLDTTVKIFFLDTFKFFISLY--GHKLPVLSLDMSY------DSTLIATGSGDRTVKVWGLDYGDCHKSL---L 1395 (2435)
Q Consensus 1327 ~~lavgs~dG~V~v~d~~~~k~i~~~~--~h~~~V~~la~sp------dg~~L~sGg~Dg~V~iwdl~~gk~~~~~---~ 1395 (2435)
..+++...+++|++|+.++++.+..+. .+...+..++++| +|+..++...+..|++|++.+++++..+ .
T Consensus 209 ~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~ 288 (329)
T 3fvz_A 209 QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR 288 (329)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC
Confidence 888888899999999999899888885 4556788999999 3333333334568999999999999887 3
Q ss_pred ccccceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1396 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1396 ~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
++-..+.+|+++|++.++++...+++|++|+++.
T Consensus 289 ~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 289 KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 6777899999999999999999999999999875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-12 Score=159.92 Aligned_cols=256 Identities=13% Similarity=0.148 Sum_probs=178.8
Q ss_pred cEEEEEECCCCCEEEEEe---------CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC---C--eE
Q psy4869 364 EIFCSKYHPDGQYIASSG---------YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD---Q--TL 429 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs---------~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D---g--~I 429 (2435)
.+..+++ ||++|+... .++.|.+||+.++... .+ ..+..++|+|||++|+.++.+ + .|
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR--FI----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE--EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE--Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 4566677 888877642 3678999998765322 22 568899999999999887754 2 48
Q ss_pred EEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeC--------------------------CCeEEEEeCCCCcce
Q psy4869 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSD--------------------------DCTVKVWDPRKKNQA 483 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~--------------------------Dg~I~vwD~~~~~~~ 483 (2435)
.+||+.+++.......+. +..+.|+|++..++++... ...|.+||+.+++.+
T Consensus 88 ~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888998887655544443 8889999999777666533 357999999887763
Q ss_pred EeecCcccEEEEEECCCCCEEEEEecCC---------eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCC-
Q psy4869 484 VSMNNTYQVTSVAFNDTAECVLTGGIDN---------DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN- 553 (2435)
Q Consensus 484 ~~~~~~~~v~sv~~sp~g~~l~sgs~dg---------~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg- 553 (2435)
..+... .+..++|+|+| +++++..++ .|+++| +++ ...+..+ ..+..+ +|||++|+.++.++
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 333223 78899999999 777776542 455556 554 3444444 556554 99999998877543
Q ss_pred -------cEEEEEcCCCCCCCceEEEEeCcccccccCeEE-EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCC
Q psy4869 554 -------TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR-CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGS 625 (2435)
Q Consensus 554 -------~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~-v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~ 625 (2435)
.|.+|| . ++.......+ ...+.. +.|+ || ++++++.++.++|| +.+++....+ .+.+.
T Consensus 238 ~~~~~~~~l~~~d-~-----~~~~~l~~~~----~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~ 303 (347)
T 2gop_A 238 KYMSEHNKLYIYD-G-----KEVMGILDEV----DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHW 303 (347)
T ss_dssp SCCCSSCEEEEEC-S-----SCEEESSTTC----CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSE
T ss_pred CCccccceEEEEC-C-----CceEeccccC----CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCe
Confidence 577777 2 2222222222 234555 8899 88 89999999999999 8777764444 55788
Q ss_pred eeEEEEcCCCCEEEEEECCCcE-EEecCC
Q psy4869 626 VNDVQFHPKEPIIMSASSDKTI-YLGESP 653 (2435)
Q Consensus 626 V~~l~fspd~~~Lasgs~Dg~I-~vWd~~ 653 (2435)
|.+++|+| .++++++.++.. .+|.++
T Consensus 304 v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 304 IMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99999999 688888877765 677654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-11 Score=155.98 Aligned_cols=264 Identities=10% Similarity=-0.001 Sum_probs=177.7
Q ss_pred CEEEEEEcCCCCEEEEEE---------CCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCC---C--cEE
Q psy4869 1084 PVLSLDMSYDSTLIATGS---------GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD---G--RVK 1149 (2435)
Q Consensus 1084 ~V~sl~~spdg~~L~Sgs---------~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~D---g--~V~ 1149 (2435)
.+...++ ||+.++... .++.|.+||+.+++... + ..+..+.|+|+|+.|+..+.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 3566666 777776542 25679999998887533 3 467899999999998877654 2 377
Q ss_pred EEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC---------------------------CcEEEEEcc
Q psy4869 1150 QWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD---------------------------RTVKVWGLD 1202 (2435)
Q Consensus 1150 iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D---------------------------g~V~iwd~~ 1202 (2435)
+||+..++...... +.. +..+.|+|+|+.|+.++.+ ..|++||+.
T Consensus 89 ~~~~~~g~~~~l~~-------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 89 VADLETLSSKKILE-------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEETTTTEEEEEEE-------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred EEECCCCceEEEEc-------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 88887765433221 223 8999999999988887632 579999999
Q ss_pred CCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccc
Q psy4869 1203 YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLEL 1282 (2435)
Q Consensus 1203 t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~ 1282 (2435)
+++.+..+.. . .+..+.|+|++ .++++..++. ... . .+...+|.+..
T Consensus 161 ~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~-------~~~-------------~----------~~~~~l~~~d~ 207 (347)
T 2gop_A 161 SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREI-------IPQ-------------Y----------FKFWDIYIWED 207 (347)
T ss_dssp TTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCS-------SCC-------------S----------SCCEEEEEEET
T ss_pred CCeEEeeecC-C-CcccccCCCCe-EEEEEecccc-------ccc-------------c----------cccccEEEeCC
Confidence 8876455544 3 78899999999 7777765431 000 0 00111121110
Q ss_pred ccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC--------CeEEEEEcccceEEEEecC
Q psy4869 1283 VSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD--------TTVKIFFLDTFKFFISLYG 1354 (2435)
Q Consensus 1283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d--------G~V~v~d~~~~k~i~~~~~ 1354 (2435)
.. . ..+.. . ..+..+ +|||++|+.++.+ +.|.+|| .++.......
T Consensus 208 ~~-----------------~-~~l~~----~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~ 260 (347)
T 2gop_A 208 GK-----------------E-EKMFE----K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE 260 (347)
T ss_dssp TE-----------------E-EEEEE----E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT
T ss_pred Cc-----------------e-EEecc----C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc
Confidence 00 0 00000 0 122233 8999999887754 3677777 6666555566
Q ss_pred CCCCeEE-EEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcE-EEEECC
Q psy4869 1355 HKLPVLS-LDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRV-KQWDAD 1428 (2435)
Q Consensus 1355 h~~~V~~-la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V-~lWd~~ 1428 (2435)
+...+.. +.|+ || ++++++.++.+++| +.+++.... ..+...|.+++|+| .++++++.++.. .||.++
T Consensus 261 ~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 261 VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 7778886 9999 98 99999999999999 887776443 34577899999999 677787777765 788876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-10 Score=137.19 Aligned_cols=278 Identities=9% Similarity=-0.023 Sum_probs=197.3
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ 438 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~ 438 (2435)
..+...+.+++++++|+++++...++.|.+||.. ..........+...+..++++++|..+++...++.|..||.. ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 3456779999999999988877668999999987 322222223456789999999999877777778899999986 44
Q ss_pred eEEEEe--ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee--cCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 439 RIKKMK--GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM--NNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 439 ~v~~l~--~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
. ..+. .+...+..+.+.+++ .++++...++.|..||. .++..... .....+..++++++|++.++...++.|.
T Consensus 89 ~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 89 I-KEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp E-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred E-EEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 3 3332 234556778777776 45556666889999998 44433222 2345689999999998877777789999
Q ss_pred EEECCCCcEEEE-EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCC
Q psy4869 515 MWDLRTNSVVQK-LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSG 593 (2435)
Q Consensus 515 lwD~~s~~~v~~-l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg 593 (2435)
.||. +++.... +..+...+.+++++++|+++++...++.|.+||.. . + +..+... .....+..++++++|
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g----~-~~~~~~~--~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS-G----E-ITEFKIP--TPNARPHAITAGAGI 236 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C----C-EEEEECS--STTCCEEEEEECSTT
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC-C----c-EEEEECC--CCCCCceeEEECCCC
Confidence 9999 6665443 33445678999999999977776678899999973 1 2 1222211 112367889999999
Q ss_pred CEEEEecCCCeEEEEECCCCcEEEE-ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 594 LYVTAGSADKCVYIWDTTTRRIAYK-LPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 594 ~~Lasgs~Dg~V~iwd~~s~~~~~~-l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+++++...++.|.+||. +++.... +..+...+.++++ +++.+.++.. .+.|..++..
T Consensus 237 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp CEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred CEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 97777777899999998 4554322 3456678999999 8887766655 4556655553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.8e-11 Score=149.90 Aligned_cols=267 Identities=16% Similarity=0.121 Sum_probs=186.4
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1083 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1083 ~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
..|.++.|++++..++....++.++.| .++....+..+...+.+++|++++++++++..++.|.+||..+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 456778899888777777888899999 45566677777778899999999997778888999999999876543322
Q ss_pred EEEEeecccccCeEEEEEeCCCCEEEEEeCC----CcEEEEEccCCceeeEee--ccCCCEEEEEEeeCCCEEEEEECC-
Q psy4869 1163 HFFISLYGHKLPVLSLDMSYDSTLIATGSGD----RTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVPKTHYFFTTSKD- 1235 (2435)
Q Consensus 1163 ~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D----g~V~iwd~~t~~~~~~~~--~h~~~V~~i~~spd~~~lvsgs~D- 1235 (2435)
..+...+.+++++++++++++...+ +.|.+||.++++....+. .+...+.++.+.|+++.+++...+
T Consensus 83 ------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 83 ------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp ------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred ------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence 1355789999999999888777666 689999998877543332 244578999999998876655431
Q ss_pred -----CcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1236 -----GRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1236 -----g~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+.|..||....+. ..+ .
T Consensus 157 ~~~~~~~l~~~~~~~~~~---------------------------~~~---------------------------~---- 178 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTV---------------------------TPI---------------------------I---- 178 (333)
T ss_dssp TTBCCEEEEEECTTSCCE---------------------------EEE---------------------------E----
T ss_pred ccCCCceEEEEeCCCCEE---------------------------EEe---------------------------e----
Confidence 2233333221110 000 0
Q ss_pred ccccccEEEEEecCCcceeEE-eecCCeEEEEEccc-ceEEE--------EecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAV-SLLDTTVKIFFLDT-FKFFI--------SLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1380 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lav-gs~dG~V~v~d~~~-~k~i~--------~~~~h~~~V~~la~spdg~~L~sGg~Dg~V 1380 (2435)
........++|+|||+.|.+ .+.++.|.+|+++. ++.+. .+.++ ..+..++++++|+++++...++.|
T Consensus 179 -~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 179 -QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp -EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEE
T ss_pred -cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEE
Confidence 00123567899999986655 45678999999963 33221 12222 467889999999988888888999
Q ss_pred EEEeCCCCceEEEeccccc------ceEEEEEeeCCCEEEEEeCC
Q psy4869 1381 KVWGLDYGDCHKSLLAHED------SVTGVTFVPKTHYFFTTSKD 1419 (2435)
Q Consensus 1381 ~iwdl~~gk~~~~~~~h~~------~V~~laf~P~~~~laSgg~D 1419 (2435)
.+||. +++.+..+..+.. .+.+++|+|++..|..++.+
T Consensus 257 ~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 257 LVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 99998 5666666554432 68999999998666544444
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-10 Score=146.53 Aligned_cols=263 Identities=8% Similarity=0.034 Sum_probs=190.4
Q ss_pred CCCcEEEEEccCCceeEEEe------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCe
Q psy4869 1102 GDRTVKVWGLDYGDCHKSLL------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPV 1175 (2435)
Q Consensus 1102 ~Dg~I~vWd~~t~~~~~~l~------~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V 1175 (2435)
.++.|.+||.++++....+. ........+.+. +++.+++...++.|.+||..+++.+..+. .....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-------~~~~p 86 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-------GFTSP 86 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-------CCSSE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-------CCCCC
Confidence 37899999999988765442 122346778774 45555666667999999999988776653 34568
Q ss_pred EEEEEeCCCCEEEEEe-CCCcEEEEEccCCceeeEeeccC-----CCEEEEEEeeCCCEEEEEE--CCCcEEEEECCCCc
Q psy4869 1176 LSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHE-----DSVTGVTFVPKTHYFFTTS--KDGRVKQWDADNFE 1247 (2435)
Q Consensus 1176 ~~l~~s~dg~~l~sgs-~Dg~V~iwd~~t~~~~~~~~~h~-----~~V~~i~~spd~~~lvsgs--~Dg~I~vwD~~~~~ 1247 (2435)
..+++++++ .++++. .++.|.+||..+++....+.... .....+.+ ++..|+++. .++.|.+||+.+.+
T Consensus 87 ~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 87 RYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp EEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTE
T ss_pred cEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCe
Confidence 889998888 555555 88999999999998777665433 14456666 344555555 37888888887765
Q ss_pred eEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcc
Q psy4869 1248 RIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1327 (2435)
Q Consensus 1248 ~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~ 1327 (2435)
.+..+.. ......++++|+|+
T Consensus 164 ~~~~i~~-----------------------------------------------------------g~~p~~i~~~~dG~ 184 (328)
T 3dsm_A 164 VVDELTI-----------------------------------------------------------GIQPTSLVMDKYNK 184 (328)
T ss_dssp EEEEEEC-----------------------------------------------------------SSCBCCCEECTTSE
T ss_pred EEEEEEc-----------------------------------------------------------CCCccceEEcCCCC
Confidence 4433211 01123567889999
Q ss_pred eeEEeecC----------CeEEEEEcccceEEEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE--e
Q psy4869 1328 LLAVSLLD----------TTVKIFFLDTFKFFISLYGHK-LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS--L 1394 (2435)
Q Consensus 1328 ~lavgs~d----------G~V~v~d~~~~k~i~~~~~h~-~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~--~ 1394 (2435)
++++...+ +.|.++|.++++....+.... .....++|+||+++|+++.. .|.+||..++++... .
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~ 262 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFL 262 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSB
T ss_pred EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeee
Confidence 77776654 789999999998877766432 36889999999999988866 999999999886421 1
Q ss_pred cccccceEEEEEee-CCCEEEEE----eCCCcEEEEECCCceeEEEEe
Q psy4869 1395 LAHEDSVTGVTFVP-KTHYFFTT----SKDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1395 ~~h~~~V~~laf~P-~~~~laSg----g~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
..+.....+++++| ++.++++. ..++.|.+||.+ .+.+++++
T Consensus 263 ~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 263 EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 12235789999999 56777777 678999999998 77778776
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.1e-11 Score=144.81 Aligned_cols=232 Identities=10% Similarity=0.049 Sum_probs=174.2
Q ss_pred EeeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCC
Q psy4869 400 VMSGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR 478 (2435)
Q Consensus 400 ~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~ 478 (2435)
.+..+.....+++|+++++ .++++..++.|..||..++ ...+..+...+..+.+.+++. ++++...++.|.+||..
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQREP 98 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEECST
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEcCC
Confidence 3445566788999999998 6777888899999999877 667777777788899988875 55666667899999997
Q ss_pred CCcceEeec-----CcccEEEEEECCCCCEEEE----Ee-------------cCCeEEEEECCCCcEEEEEecCCCCEEE
Q psy4869 479 KKNQAVSMN-----NTYQVTSVAFNDTAECVLT----GG-------------IDNDIKMWDLRTNSVVQKLRGHSDTVTG 536 (2435)
Q Consensus 479 ~~~~~~~~~-----~~~~v~sv~~sp~g~~l~s----gs-------------~dg~V~lwD~~s~~~v~~l~~h~~~V~~ 536 (2435)
+++...... ....++.++++|+|+++++ |. ..+.|+.+|.. ++ +..+..+.....+
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~g 176 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNG 176 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCcc
Confidence 776543322 1234678999999998887 33 13577777766 44 4445566778899
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCCCCCce---EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC
Q psy4869 537 LSLSPDGSYILSNAMDNTVRIWDIRPYVPGERC---VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR 613 (2435)
Q Consensus 537 i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~---v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~ 613 (2435)
++|+|||+.|++.+.++.|.+||+.. .+.. ...+..+ ...+..++++++|+++++. ++.|.+||.. +
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~----~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g 246 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNA---RGETEYQGVHFTVE----PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G 246 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECS---SSCEEEEEEEECCS----SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECC---CCcCcCCCeEeeCC----CCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence 99999999997777889999999862 1222 2233111 2245578999999977776 8899999986 8
Q ss_pred cEEEEecCCCCCeeEEEE-cCCCCEEEEEECCCcE
Q psy4869 614 RIAYKLPGHNGSVNDVQF-HPKEPIIMSASSDKTI 647 (2435)
Q Consensus 614 ~~~~~l~~h~~~V~~l~f-spd~~~Lasgs~Dg~I 647 (2435)
+.+..+..+.. +++++| .|+++.|++++.++.+
T Consensus 247 ~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~ 280 (296)
T 3e5z_A 247 DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFW 280 (296)
T ss_dssp CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence 88888877777 999999 6899999999887533
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-10 Score=142.45 Aligned_cols=241 Identities=14% Similarity=0.079 Sum_probs=176.2
Q ss_pred EecccCCcEEEEEECCCCC-EEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 357 LLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
.+..+.....+++|+|+|+ +++++..++.|.+||..+. ...+..+...+..++++++|+++++...++.|.+||..
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 4445666778999999998 7888889999999998765 34556677889999999999987777677899999998
Q ss_pred CCceEEEEecc----CccccccCcccCCCeEEEE----Ee-------------CCCeEEEEeCCCCcceEeecCcccEEE
Q psy4869 436 KGQRIKKMKGH----STFVNSCDPVRRGQLLIAS----GS-------------DDCTVKVWDPRKKNQAVSMNNTYQVTS 494 (2435)
Q Consensus 436 tg~~v~~l~~h----~~~v~sv~~~~~~~~llas----gs-------------~Dg~I~vwD~~~~~~~~~~~~~~~v~s 494 (2435)
+++........ ...++.+.+.+++. ++++ |. ..+.|..+|.. ++...........+.
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG 176 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence 88755443221 23466788888885 4444 22 13466666665 444333455566789
Q ss_pred EEECCCCCEEEEEecCCeEEEEECC-CCcE---EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceE
Q psy4869 495 VAFNDTAECVLTGGIDNDIKMWDLR-TNSV---VQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCV 570 (2435)
Q Consensus 495 v~~sp~g~~l~sgs~dg~V~lwD~~-s~~~---v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v 570 (2435)
++|+|+|+.+++...++.|++||+. +++. ...+..+.+.+.+|+++++|+++++. ++.|.+||.. ++.+
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-----g~~~ 249 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-----GDEL 249 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-----SCEE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-----CCEE
Confidence 9999999999777778999999987 5554 33344455667889999999976666 8899999975 4555
Q ss_pred EEEeCcccccccCeEEEEE-cCCCCEEEEecCCCeEEEEECCCCcE
Q psy4869 571 KVMSGHQHNFEKNLLRCAW-SVSGLYVTAGSADKCVYIWDTTTRRI 615 (2435)
Q Consensus 571 ~~~~~h~~~~~~~i~~v~~-spdg~~Lasgs~Dg~V~iwd~~s~~~ 615 (2435)
..+..+. . +..++| +|+++.|++++.++ +.-++.++.++
T Consensus 250 ~~~~~~~----~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 250 GRVLTPQ----T-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEEECSS----C-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEEECCC----C-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 5565443 2 677889 68999999988764 55667766655
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-09 Score=132.58 Aligned_cols=281 Identities=9% Similarity=0.059 Sum_probs=198.1
Q ss_pred cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE-eccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcce
Q psy4869 1080 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL-LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1158 (2435)
Q Consensus 1080 ~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l-~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~ 1158 (2435)
.+...+.++++.++|+++++...++.|.+||.. ++..... ..+...+..+++.+++.++++...++.|..||.. +.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~- 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI- 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-
Confidence 455689999999999987766668899999988 6543322 2345679999999999877777778899999976 22
Q ss_pred eEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeE-eeccCCCEEEEEEeeCCCEEEEEECCCc
Q psy4869 1159 IVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LLAHEDSVTGVTFVPKTHYFFTTSKDGR 1237 (2435)
Q Consensus 1159 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~-~~~h~~~V~~i~~spd~~~lvsgs~Dg~ 1237 (2435)
...+. .......+..+++.+++.++++...++.|.+||. +++.... ...+...+.++.+.++++.+++...++.
T Consensus 89 ~~~~~----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 89 IKEYT----LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp EEEEE----CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred EEEEe----CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 22221 1224557899999999988887777889999998 5654322 2234557899999998887666656678
Q ss_pred EEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccE
Q psy4869 1238 VKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV 1317 (2435)
Q Consensus 1238 I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 1317 (2435)
|..||. +.+.. . +.+. .....+
T Consensus 164 i~~~~~-~g~~~-~--------------------------~~~~------------------------------~~~~~~ 185 (299)
T 2z2n_A 164 IGRITE-SGDIT-E--------------------------FKIP------------------------------TPASGP 185 (299)
T ss_dssp EEEECT-TCCEE-E--------------------------EECS------------------------------STTCCE
T ss_pred EEEEcC-CCcEE-E--------------------------eeCC------------------------------CCCCcc
Confidence 888876 32211 0 1000 001346
Q ss_pred EEEEecCCcceeEEeecCCeEEEEEcccceEEE-EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE-ec
Q psy4869 1318 LCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI-SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LL 1395 (2435)
Q Consensus 1318 ~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~-~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~-~~ 1395 (2435)
..+++.++|+.+++...++.|.+|+. +++... ....+...+..++++++|++.++...++.|.+||. +++.... ..
T Consensus 186 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~ 263 (299)
T 2z2n_A 186 VGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQ 263 (299)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECS
T ss_pred eeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCC
Confidence 68899999987777767889999998 665432 23345567899999999997777767899999998 4554332 34
Q ss_pred ccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1396 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1396 ~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
.+...+.++++ +++.++++.. .+.|..+|.++.
T Consensus 264 ~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 264 IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 55567999999 8888887765 567777777653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-10 Score=161.08 Aligned_cols=280 Identities=11% Similarity=-0.025 Sum_probs=189.2
Q ss_pred CCCCEEEEEECC-C----cEEEEEcCCCeEEEEEe------cCCcCEEEEEEcCCCCEEEEEECCC-----cEEEEEccC
Q psy4869 1050 PDSKLLAVSLLD-T----TVKIFFLDTFKFFISLY------GHKLPVLSLDMSYDSTLIATGSGDR-----TVKVWGLDY 1113 (2435)
Q Consensus 1050 pdg~~Lavg~~d-g----~V~i~d~~~~~~~~~l~------~h~~~V~sl~~spdg~~L~Sgs~Dg-----~I~vWd~~t 1113 (2435)
|+|++++....+ + .+.+.+..+++....+. +|...+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 889888766533 2 33444443444322221 3445688999999999998766543 899999999
Q ss_pred CceeEEEeccCCCEEEEEEccCCCEEEEEeCCCc----------------EEEEeCCCcceeEEEEEEEeecccccCeEE
Q psy4869 1114 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR----------------VKQWDADNFERIVTLHFFISLYGHKLPVLS 1177 (2435)
Q Consensus 1114 ~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~----------------V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~ 1177 (2435)
++.+.....+ ..+..++|+||++.|+.+..++. |++|++.++.....+ +.....+...+..
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~--v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL--CAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE--EECCTTCTTCEEE
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE--EeccCCCCeEEEE
Confidence 9876643322 22678999999999998887765 999999876532111 0111234556789
Q ss_pred EEEeCCCCEEEEEeC-----CCcEEEEEccC------Cc-eeeEeeccCCCEEEEEEeeCCCEEEEEECCC----cEEEE
Q psy4869 1178 LDMSYDSTLIATGSG-----DRTVKVWGLDY------GD-CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG----RVKQW 1241 (2435)
Q Consensus 1178 l~~s~dg~~l~sgs~-----Dg~V~iwd~~t------~~-~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg----~I~vw 1241 (2435)
+.|+|||++|+.++. +..|++||+.+ +. ....+..+...+.. .|+++++.|+..+.++ .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 999999999988764 67899999987 53 35566666666655 4788888777666432 36666
Q ss_pred ECCCCce--EEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEE
Q psy4869 1242 DADNFER--IVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1319 (2435)
Q Consensus 1242 D~~~~~~--v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1319 (2435)
|+..... ...+. .......+..
T Consensus 317 d~~~~~~~~~~~l~--------------------------------------------------------~~~~~~~~~~ 340 (710)
T 2xdw_A 317 DFTDPEESKWKVLV--------------------------------------------------------PEHEKDVLEW 340 (710)
T ss_dssp ETTSCCGGGCEEEE--------------------------------------------------------CCCSSCEEEE
T ss_pred eCCCCCcccceecc--------------------------------------------------------CCCCCCeEEE
Confidence 6544321 00000 0000124566
Q ss_pred EEecCCcceeEEeecCCe--EEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEE----eCCCcEEEEeCCCCc
Q psy4869 1320 ARVSPDSKLLAVSLLDTT--VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG----SGDRTVKVWGLDYGD 1389 (2435)
Q Consensus 1320 ia~spdg~~lavgs~dG~--V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sG----g~Dg~V~iwdl~~gk 1389 (2435)
++|++++..+++...+|. |.+|++.+++.+..+..+.+.+..++++|+++.|+.. ...+.|+.||+.+++
T Consensus 341 ~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 341 VACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 788888888888888885 5566766788777888788889999999999866533 235789999999887
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-10 Score=141.10 Aligned_cols=283 Identities=10% Similarity=0.013 Sum_probs=193.9
Q ss_pred cCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEe
Q psy4869 322 RKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVM 401 (2435)
Q Consensus 322 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l 401 (2435)
..++.+.++|.+.......+..... -.........+.+. +++++++...++.|.+||..+... +..+
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n-----------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i 80 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRAN-----------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRI 80 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHH-----------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhc-----------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEc
Confidence 3477899999886544332211000 00112335566664 345555556689999999876533 2333
Q ss_pred eCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEeccC-----ccccccCcccCCCeEEEEEe-CCCeEEE
Q psy4869 402 SGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQRIKKMKGHS-----TFVNSCDPVRRGQLLIASGS-DDCTVKV 474 (2435)
Q Consensus 402 ~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~~v~~l~~h~-----~~v~sv~~~~~~~~llasgs-~Dg~I~v 474 (2435)
. .......+++++++ .++.+. .++.|.+||..+++....+.... .....+.+ ++..++++.. .++.|.+
T Consensus 81 ~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~v 156 (328)
T 3dsm_A 81 T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILK 156 (328)
T ss_dssp E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEE
T ss_pred C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEE
Confidence 3 34678999999988 555555 89999999999998887776433 13445555 4556666655 5899999
Q ss_pred EeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC----------CeEEEEECCCCcEEEEEecC-CCCEEEEEEcCCC
Q psy4869 475 WDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID----------NDIKMWDLRTNSVVQKLRGH-SDTVTGLSLSPDG 543 (2435)
Q Consensus 475 wD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d----------g~V~lwD~~s~~~v~~l~~h-~~~V~~i~~spdg 543 (2435)
||+.+++....+........++++|+|++++++..+ +.|.+||..+++....+... ......++|+||+
T Consensus 157 iD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 157 IDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp EETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred EECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 999999888777666667889999999977776554 78999999999988777543 2468999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC-CCCEEEEe----cCCCeEEEEECCCCcEEEE
Q psy4869 544 SYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV-SGLYVTAG----SADKCVYIWDTTTRRIAYK 618 (2435)
Q Consensus 544 ~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp-dg~~Lasg----s~Dg~V~iwd~~s~~~~~~ 618 (2435)
++|+.+.. .|.+||+......... .+... ......++++| +++++++. ..++.|.+||.. ++.+..
T Consensus 237 ~~lyv~~~--~v~~~d~~t~~~~~~~--~~~~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEADRVPVRP--FLEFR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp CEEEEESS--SEEEEETTCSSCCSSC--SBCCC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred CEEEEEcc--EEEEEECCCCceeeee--eecCC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 99988765 8999998743211100 01100 23578899999 56666666 678999999998 988887
Q ss_pred ecCCCCCeeEEEE
Q psy4869 619 LPGHNGSVNDVQF 631 (2435)
Q Consensus 619 l~~h~~~V~~l~f 631 (2435)
+.- ......++|
T Consensus 308 i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 308 FYV-GIIPGAFCW 319 (328)
T ss_dssp EEE-EESEEEEEE
T ss_pred EEe-ccCcceEEE
Confidence 742 233444554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-09 Score=133.94 Aligned_cols=286 Identities=10% Similarity=-0.090 Sum_probs=195.8
Q ss_pred EcCCCCEEEEEEC--CC---cEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEEcc
Q psy4869 1048 VSPDSKLLAVSLL--DT---TVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDRTVKVWGLD 1112 (2435)
Q Consensus 1048 ~spdg~~Lavg~~--dg---~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs----------~Dg~I~vWd~~ 1112 (2435)
..|+++++++... .+ .|.+||..+++.+..+.....+ .++++||+++|+.+. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4478888888764 22 7899999999998888765555 999999999999886 36789999999
Q ss_pred CCceeEEEecc-------CCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCcceeEE-EEEEEeecccccCeEEEEEeC
Q psy4869 1113 YGDCHKSLLAH-------EDSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVT-LHFFISLYGHKLPVLSLDMSY 1182 (2435)
Q Consensus 1113 t~~~~~~l~~h-------~~~V~~v~fsp~~~~l~s~s~--Dg~V~iwD~~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~ 1182 (2435)
+++.+..+... ......+.|+|++++|+++.. ++.|.++| .+++.... +. ... ++.+.+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-------~~~---~~~~~~ 174 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-------SPT---CYHIHP 174 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-------CCc---eEEEEe
Confidence 98888776532 123468999999999998874 47899999 88776554 32 111 133445
Q ss_pred CC-CEEEEEeCCCcEEEEEccCCceeeEee-----ccCCCE-EEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1183 DS-TLIATGSGDRTVKVWGLDYGDCHKSLL-----AHEDSV-TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1183 dg-~~l~sgs~Dg~V~iwd~~t~~~~~~~~-----~h~~~V-~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
++ +.+++.+.||.+.++|. +++.+.... ....++ ....+.+++..++..+.++.+.+.|+.......
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v----- 248 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN----- 248 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE-----
Confidence 44 45566778999999999 887653321 111221 234566665555555577788888875432110
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec-
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL- 1334 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~- 1334 (2435)
+.-|++..... ............++++||++.+.+...
T Consensus 249 -------------------~~~~~~~~~~~----------------------~~~~~~p~g~~~~~~s~d~~~lyV~~~~ 287 (373)
T 2mad_H 249 -------------------KAPIDALSGGR----------------------KADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred -------------------eeeeeecCCcc----------------------cccceecCceEeEEECCCCCEEEEEecc
Confidence 01122110000 000000122345678999988877653
Q ss_pred ---------CCeEEEEEcccceEEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCceEEEe
Q psy4869 1335 ---------DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST-LIATGS-GDRTVKVWGLDYGDCHKSL 1394 (2435)
Q Consensus 1335 ---------dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~-~L~sGg-~Dg~V~iwdl~~gk~~~~~ 1394 (2435)
.+.|.++|.++++.+..+... .....++|+|||+ +++++. .++.|.++|..+++.++.+
T Consensus 288 ~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 288 QSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 358999999999998888643 3578999999999 788887 5899999999999998873
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-10 Score=139.95 Aligned_cols=212 Identities=10% Similarity=0.068 Sum_probs=171.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEeccC-ccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCc--ccE
Q psy4869 416 DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHS-TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT--YQV 492 (2435)
Q Consensus 416 dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~-~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~--~~v 492 (2435)
.++.|++++.|+.|++||.++|+.+.++..+. ..+.++.+.|++. +++ +.++.|..||. +++.+..+... ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 45789999999999999999999999998776 4678888899885 444 45788999999 78888888643 578
Q ss_pred EEEEECCCCCEEEEEec-CCeEEEEECCCCcEEEEEec------CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCC
Q psy4869 493 TSVAFNDTAECVLTGGI-DNDIKMWDLRTNSVVQKLRG------HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP 565 (2435)
Q Consensus 493 ~sv~~sp~g~~l~sgs~-dg~V~lwD~~s~~~v~~l~~------h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~ 565 (2435)
.++.+.++|+++++.+. ++.|..+|. +++.+..+.. +......+.+.++|+++++...++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~---- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN---- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT----
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC----
Confidence 89999999999999887 888988886 7887777642 22345567889999999999999999999975
Q ss_pred CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCC------CCeeEEEEcCCCCEEE
Q psy4869 566 GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHN------GSVNDVQFHPKEPIIM 639 (2435)
Q Consensus 566 ~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~------~~V~~l~fspd~~~La 639 (2435)
++.+-.+.... ....+...++|++|+++..++.|..+|..+|+.+..+..+. ..+..++..+++.+++
T Consensus 155 -G~~~w~~~~~~-----~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 155 -GQLLNSVKLSG-----TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp -SCEEEEEECSS-----CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred -CCEEEEEECCC-----CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 45566665432 34567788999999999999999999999999998886432 2378889999999888
Q ss_pred EEE
Q psy4869 640 SAS 642 (2435)
Q Consensus 640 sgs 642 (2435)
+..
T Consensus 229 ~~~ 231 (276)
T 3no2_A 229 CNW 231 (276)
T ss_dssp EEE
T ss_pred Eec
Confidence 774
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-10 Score=160.42 Aligned_cols=244 Identities=15% Similarity=0.067 Sum_probs=175.6
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCC-----eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCe-------
Q psy4869 404 HTGAVMDLKFSTDGCHIFTCSTDQ-----TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT------- 471 (2435)
Q Consensus 404 h~~~V~~l~~s~dg~~L~s~s~Dg-----~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~------- 471 (2435)
|...+..++|+|||++|+.+..++ .|++||+.+|+.+.....+. .+..+.|+|++..++.+. .++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~-~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNA-YPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEE-CCCCSSCCSSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEE-ECCcccccccc
Confidence 445688999999999998776543 89999999998766433332 266789999997766554 4433
Q ss_pred ---------EEEEeCCCCcce--Eeec---CcccEEEEEECCCCCEEEEEec-----CCeEEEEECCC------Cc-EEE
Q psy4869 472 ---------VKVWDPRKKNQA--VSMN---NTYQVTSVAFNDTAECVLTGGI-----DNDIKMWDLRT------NS-VVQ 525 (2435)
Q Consensus 472 ---------I~vwD~~~~~~~--~~~~---~~~~v~sv~~sp~g~~l~sgs~-----dg~V~lwD~~s------~~-~v~ 525 (2435)
|++|++.++... ..+. +...+..+.|+|||++|+.+.. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999877632 2222 3445789999999999998765 67899999986 43 456
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEECC----CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 526 KLRGHSDTVTGLSLSPDGSYILSNAMD----NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 526 ~l~~h~~~V~~i~~spdg~~las~s~D----g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
.+..+...+.. .|+|+|..|+..+.+ +.|.+||+.... ......+..+.. ...+..+.|++++.++++...
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~~l~~~~~--~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE--ESKWKVLVPEHE--KDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC--GGGCEEEECCCS--SCEEEEEEEETTTEEEEEEEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC--cccceeccCCCC--CCeEEEEEEEcCCEEEEEEEE
Confidence 66667666655 488999988876653 369999987421 112233433321 124667889988888888888
Q ss_pred CCe--EEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEE-E---CCCcEEEecCCC
Q psy4869 602 DKC--VYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSA-S---SDKTIYLGESPL 654 (2435)
Q Consensus 602 Dg~--V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasg-s---~Dg~I~vWd~~~ 654 (2435)
|+. |.+||+.+++.+..+..+.+.|..+.++|+++.|+.. + ..+.|+.||+..
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 884 6677887888888888888889999999998865533 3 247899999863
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-10 Score=138.97 Aligned_cols=238 Identities=8% Similarity=-0.041 Sum_probs=170.2
Q ss_pred CeeEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe
Q psy4869 407 AVMDLKFSTDGCHIF-TCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS 485 (2435)
Q Consensus 407 ~V~~l~~s~dg~~L~-s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~ 485 (2435)
...+++++++|+.++ +...++.|.+||..++........+...+..+++.+++. ++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEeee
Confidence 678899999998666 446788999999765543322223335677788888775 555544 88999999876554322
Q ss_pred e-cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC
Q psy4869 486 M-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV 564 (2435)
Q Consensus 486 ~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~ 564 (2435)
. .....+..++++++|+++++...++.|.+||..+.........+...+.+|+++++|+++++...++.|.+||...
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-- 180 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-- 180 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT--
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC--
Confidence 2 2235689999999999777777789999998766654433333344678999999999777777789999999863
Q ss_pred CCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECC
Q psy4869 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 565 ~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~D 644 (2435)
.......... ...+..++++++|+++++...++.|.+||............+...+.++++.++++++++...+
T Consensus 181 --~~~~~~~~~~----~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 181 --NNQVVLPFTD----ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp --CCEEECCCSS----CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred --CceEeecccC----CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence 2221111111 1357889999999888888889999999987655433322344678999999999988898899
Q ss_pred CcEEEecCCC
Q psy4869 645 KTIYLGESPL 654 (2435)
Q Consensus 645 g~I~vWd~~~ 654 (2435)
+.|++++++.
T Consensus 255 ~~v~~~~~~~ 264 (270)
T 1rwi_B 255 DRVVKLTSLE 264 (270)
T ss_dssp TEEEEECCCG
T ss_pred CEEEEEcCCC
Confidence 9999999873
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-07 Score=132.49 Aligned_cols=481 Identities=9% Similarity=0.063 Sum_probs=294.4
Q ss_pred CceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe-CCC---eEEEEEEecCCCEEEEEeCCCeEEEEEccCCceee
Q psy4869 886 SEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID-TGS---YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILE 961 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~-~~~---~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~ 961 (2435)
..|.+|...++|...+ |..+.+..||..+.+...-.. ... .+.++...++|++. +++. +.|.+||.+++++..
T Consensus 88 n~I~~i~~d~~g~lWi-gT~~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lw-i~t~-~gl~~~~~~~~~~~~ 164 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWI-GTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLL-ISTP-EGLIMFDIKESKFID 164 (795)
T ss_dssp SCEEEEEECTTSCEEE-EESSCEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEE-EEET-TEEEEEETTTTEEEC
T ss_pred cceeEEEECCCCCEEE-EeCCchheeCCCCCeEEeccccccCCCceEEEEEECCCCCEE-EEEC-CceEEEECCCCEEEe
Confidence 4689999999887665 445678999988765432111 111 16677777777644 4555 568899988776543
Q ss_pred ccccc-ccc-eeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeecccccc
Q psy4869 962 DIPAH-SQE-LWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1039 (2435)
Q Consensus 962 ~~~~h-~~~-V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1039 (2435)
-...+ ... |.++...+++ .+..+..++-|..|+.....+.. .. ....
T Consensus 165 ~~~~~~~~~~i~~i~~d~~g-----------~lwigt~~~Gl~~~~~~~~~~~~-----------------~~---~~~~ 213 (795)
T 4a2l_A 165 DSFSTAMHKTIASTLYRQGD-----------QIYIGTSTDGLYTYSITQKTFEK-----------------VI---PILG 213 (795)
T ss_dssp SSSCHHHHTCCEEEEEEETT-----------EEEEEESSSCEEEEETTTCCEEE-----------------CC-------
T ss_pred ccCCCCCCcceEEEEECCCC-----------CEEEEECCCCEEEEeCCCCeEEE-----------------ec---CCCC
Confidence 22211 123 7788777665 56666665557788754322100 00 0012
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec-------CCcCEEEEEEcCCCCEEEEEECCCcEEEEEcc
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG-------HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1112 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~-------h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~ 1112 (2435)
...|.++...++|.+.+ |+.++-+.+|+..+.+....... ....|.++...++|.+.+ |..+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 35688888888777554 55454588999877665433221 135699999988887555 5555 58999987
Q ss_pred CCceeEEEec-------cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEE-eecccccCeEEEEEeCCC
Q psy4869 1113 YGDCHKSLLA-------HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFI-SLYGHKLPVLSLDMSYDS 1184 (2435)
Q Consensus 1113 t~~~~~~l~~-------h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~-~~~~h~~~V~~l~~s~dg 1184 (2435)
+++....... ....|.++...+++. |..|+.++-|..|+.....- ..+.... ........|.++...++|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCC
Confidence 7654433211 235799999988776 55677777899998765432 1111000 000124569999988877
Q ss_pred CEEEEEeCCCcEEEEEccCCceeeEeec--------cCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeC-
Q psy4869 1185 TLIATGSGDRTVKVWGLDYGDCHKSLLA--------HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFN- 1255 (2435)
Q Consensus 1185 ~~l~sgs~Dg~V~iwd~~t~~~~~~~~~--------h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~- 1255 (2435)
. |..|+.++-|..||..+++....... ....|.++...++++.|..|+.++-|..||..+.+. ..+...
T Consensus 369 ~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~ 446 (795)
T 4a2l_A 369 N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRN 446 (795)
T ss_dssp C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTT
T ss_pred C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCC
Confidence 5 55677777899999887764332211 235799999888888677788888899999876543 222210
Q ss_pred ----C-ccc---ccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcc
Q psy4869 1256 ----P-NVY---LPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1327 (2435)
Q Consensus 1256 ----~-~~~---~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~ 1327 (2435)
. .++ ......+..|+. +.+.+|+......... .. . ..........|.++...++|+
T Consensus 447 ~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~-~~-------~-------~~~~~~~~~~i~~i~~d~~g~ 510 (795)
T 4a2l_A 447 SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTI-EK-------E-------KDGTPVVSKQITTLFRDSHKR 510 (795)
T ss_dssp SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEEC-CB-------C-------TTCCBCCCCCEEEEEECTTCC
T ss_pred CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEc-cc-------c-------ccccccCCceEEEEEECCCCC
Confidence 0 000 111234555555 4577777642211000 00 0 000001135688999888887
Q ss_pred eeEEeecCCeEEEEEcccceEEEEec-------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeccc---
Q psy4869 1328 LLAVSLLDTTVKIFFLDTFKFFISLY-------GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH--- 1397 (2435)
Q Consensus 1328 ~lavgs~dG~V~v~d~~~~k~i~~~~-------~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h--- 1397 (2435)
..+ |+. +.|..|+.++.+. .+. .....|.++..+++|++.+... + -|..||.++++...-...+
T Consensus 511 lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~ 584 (795)
T 4a2l_A 511 LWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLP 584 (795)
T ss_dssp EEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCS
T ss_pred EEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCc
Confidence 555 444 5688899877665 222 1235689999999998666544 3 5778888877654322211
Q ss_pred ccceEEEEEeeCCCEEEEEeCCCcEEEEECCCce
Q psy4869 1398 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1398 ~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
...|.++..++++++.+++ ++.|..||..+.+
T Consensus 585 ~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 585 NNVVYGILEDSFGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp CSCEEEEEECTTSCEEEEE--TTEEEEEETTTTE
T ss_pred hhheEEEEECCCCCEEEEc--CCceEEEcCCCCc
Confidence 3469999999999888766 4568889988644
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-09 Score=135.42 Aligned_cols=285 Identities=9% Similarity=-0.049 Sum_probs=192.8
Q ss_pred cCCCCEEEEEEC--CC---cEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCC
Q psy4869 1091 SYDSTLIATGSG--DR---TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS----------KDGRVKQWDADN 1155 (2435)
Q Consensus 1091 spdg~~L~Sgs~--Dg---~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s----------~Dg~V~iwD~~~ 1155 (2435)
.|+++++++... .. .|.+||..+++.+..+.....+ .++++||++.++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 467777766653 22 7899999999988887654444 999999999999886 367899999998
Q ss_pred cceeEEEEEE-EeecccccCeEEEEEeCCCCEEEEEeC--CCcEEEEEccCCceeeE-eeccCCCEEEEEEeeCC-CEEE
Q psy4869 1156 FERIVTLHFF-ISLYGHKLPVLSLDMSYDSTLIATGSG--DRTVKVWGLDYGDCHKS-LLAHEDSVTGVTFVPKT-HYFF 1230 (2435)
Q Consensus 1156 ~~~~~~~~~~-~~~~~h~~~V~~l~~s~dg~~l~sgs~--Dg~V~iwd~~t~~~~~~-~~~h~~~V~~i~~spd~-~~lv 1230 (2435)
.+....+... .....+......+.++|||++|+++.. ++.|.++| .+++.+.. +... . ++.+.|++ +.++
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~ 181 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFY 181 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEE
Confidence 7776665411 000001123458899999999999874 57899999 99988777 5322 1 24455654 4566
Q ss_pred EEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1231 sgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+.+.||.+.++|. ..+.+........ + ..
T Consensus 182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~--------------------~-~~----------------------------- 210 (373)
T 2mad_H 182 LLCAQGGLAKTDH-AGGAAGAGLVGAM--------------------L-TA----------------------------- 210 (373)
T ss_pred EEcCCCCEEEEEC-CCcEEEEEecccc--------------------c-cC-----------------------------
Confidence 6778999999988 6554322110000 0 00
Q ss_pred ccccccEEEEEecCCcceeEEeecCCeEEEEEcccc--eEEEEecC----------CCCCeEEEEEecCCCEEEEEeC--
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF--KFFISLYG----------HKLPVLSLDMSYDSTLIATGSG-- 1376 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~--k~i~~~~~----------h~~~V~~la~spdg~~L~sGg~-- 1376 (2435)
.........+.+++..++..+.+|.+.++|+... +.+..+.. .......++++||++.|+.+..
T Consensus 211 --~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 211 --AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred --CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 0000112345566655555557788888888654 22222221 1223445789999998887654
Q ss_pred --------CCcEEEEeCCCCceEEEecccccceEEEEEeeCCC-EEEEEe-CCCcEEEEECCCceeEEEE
Q psy4869 1377 --------DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH-YFFTTS-KDGRVKQWDADNFERIVTL 1436 (2435)
Q Consensus 1377 --------Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~-~laSgg-~Dg~V~lWd~~~~~~l~~~ 1436 (2435)
++.|.++|..+++.++.+... ....+++|+||++ +|+++. .++.|.+||..+.+.++.+
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 357999999999998888533 3589999999998 777777 5899999999999988873
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.1e-11 Score=164.27 Aligned_cols=278 Identities=13% Similarity=0.032 Sum_probs=181.9
Q ss_pred cCCCCEEEEEECCC---cEEEE--EcCCCeEEEEEe------cCCcCEEEEEEcCCCCEEEE-----EECCCcEEEEEcc
Q psy4869 1049 SPDSKLLAVSLLDT---TVKIF--FLDTFKFFISLY------GHKLPVLSLDMSYDSTLIAT-----GSGDRTVKVWGLD 1112 (2435)
Q Consensus 1049 spdg~~Lavg~~dg---~V~i~--d~~~~~~~~~l~------~h~~~V~sl~~spdg~~L~S-----gs~Dg~I~vWd~~ 1112 (2435)
+|+|++++....++ .-.+| +...++....+. +|...+.+++|||||++|+. |+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37899888776543 34444 444444333322 46667999999999999883 4445689999999
Q ss_pred CCceeEEEeccCCCE--EEEEEccCCCEEEEEeCCCc-------------EEEEeCCCcceeEEEEEEEeecccccCeEE
Q psy4869 1113 YGDCHKSLLAHEDSV--TGVTFVPKTHYFFTTSKDGR-------------VKQWDADNFERIVTLHFFISLYGHKLPVLS 1177 (2435)
Q Consensus 1113 t~~~~~~l~~h~~~V--~~v~fsp~~~~l~s~s~Dg~-------------V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~ 1177 (2435)
+++.+. ..+...+ ..++|+||++.|+.++.|.. |++|++.++.....+ +.....+...+..
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l--v~~~~~~~~~~~~ 231 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV--VHERTGDPTTFLQ 231 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE--EECCCCCTTCEEE
T ss_pred CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE--EEecCCCCEEEEE
Confidence 988641 1111222 68999999999999988776 999999876532111 1112234567889
Q ss_pred EEEeCCCCEEEEEeCCC----cEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEEC----CCcEEEEECCCCce-
Q psy4869 1178 LDMSYDSTLIATGSGDR----TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK----DGRVKQWDADNFER- 1248 (2435)
Q Consensus 1178 l~~s~dg~~l~sgs~Dg----~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~----Dg~I~vwD~~~~~~- 1248 (2435)
+.|+|||++|+.++.++ .|++||..+++ ...+..+...+....+ +++. |+..+. ++.|.+||+.....
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc
Confidence 99999999998877665 67777766555 4455556666666666 5666 444442 35566666543321
Q ss_pred -EEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcc
Q psy4869 1249 -IVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1327 (2435)
Q Consensus 1249 -v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~ 1327 (2435)
...+. .......+..++++ ++.
T Consensus 309 ~~~~l~--------------------------------------------------------~~~~~~~l~~~~~~-~~~ 331 (695)
T 2bkl_A 309 SWKEIV--------------------------------------------------------PEDSSASLLSVSIV-GGH 331 (695)
T ss_dssp GCEEEE--------------------------------------------------------CCCSSCEEEEEEEE-TTE
T ss_pred CCeEEe--------------------------------------------------------cCCCCCeEEEEEEE-CCE
Confidence 00000 00002235566777 677
Q ss_pred eeEEeecCCeEEEEEcc-cceEEEEecCC-CCCeEEEEEecCCCEEEE----EeCCCcEEEEeCCCCce
Q psy4869 1328 LLAVSLLDTTVKIFFLD-TFKFFISLYGH-KLPVLSLDMSYDSTLIAT----GSGDRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1328 ~lavgs~dG~V~v~d~~-~~k~i~~~~~h-~~~V~~la~spdg~~L~s----Gg~Dg~V~iwdl~~gk~ 1390 (2435)
.+++...+|..+||.++ .++....+..+ .+.+..++++||++.|+. ....+.|++||+.+++.
T Consensus 332 lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 332 LSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 88888899988888765 45555666655 567788899999987763 33458899999998874
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-07 Score=129.19 Aligned_cols=525 Identities=9% Similarity=0.069 Sum_probs=292.0
Q ss_pred CCceEEEEEeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEE
Q psy4869 23 NCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTF 102 (2435)
Q Consensus 23 ~~~v~~~~~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~ 102 (2435)
+.+.+...+..++|++.+... +.+.+||..+.+....... . ......|.++...++| .+.++.. +-+..|
T Consensus 86 ~~n~I~~i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~~~~~-~------~~~~~~i~~i~~d~~g-~lwi~t~-~gl~~~ 155 (795)
T 4a2l_A 86 ANDISRIVKTDSQGRVWIGTR-DGLSRYDEEKDIFQNFFYE-K------NGKHLQVNGIEEISPE-QLLISTP-EGLIMF 155 (795)
T ss_dssp SCSCEEEEEECTTSCEEEEES-SCEEEEETTTTEEEEECCE-E------TTEECCCCEEEEEETT-EEEEEET-TEEEEE
T ss_pred cccceeEEEECCCCCEEEEeC-CchheeCCCCCeEEecccc-c------cCCCceEEEEEECCCC-CEEEEEC-CceEEE
Confidence 344444444456787666554 5689999875543221110 0 0000115677777777 4555655 458889
Q ss_pred ECCCCCeEEEecCC-CCC-EEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEE-EecCCCcEEEEEEeecCCCcEEEEE
Q psy4869 103 SLDTTDVISTFTGH-KSA-ITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHR-LSGHKGVITDIRFMSQPGHHFVVSS 179 (2435)
Q Consensus 103 d~~~~~~~~~l~gH-~~~-V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~-l~gH~~~V~~v~~~~~~~~~~l~S~ 179 (2435)
+..+++......++ ... |.++...++|.+.+ |+.++-|..||..+.+.... ...+...|.++... .++.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d--~~g~lwig- 231 (795)
T 4a2l_A 156 DIKESKFIDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQ--SPTRIWVA- 231 (795)
T ss_dssp ETTTTEEECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEE--ETTEEEEE-
T ss_pred ECCCCEEEeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEc--CCCCEEEE-
Confidence 98776443221111 123 88898888776555 66665689999776653322 12235678888764 34555554
Q ss_pred eCCCcEEEEeccCCcccccccc-------ccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcce
Q psy4869 180 AKDTFVKIWDADTGDCFKTMAA-------HLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQ 252 (2435)
Q Consensus 180 s~Dg~I~iWd~~tg~~~~~~~~-------h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~ 252 (2435)
+.++-+.+||..+++....... ....|+++...++|.+ ..|+.+ -|.+||........
T Consensus 232 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~------------- 296 (795)
T 4a2l_A 232 TEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFAS------------- 296 (795)
T ss_dssp EBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEE-------------
T ss_pred ECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEE-------------
Confidence 4444488999887754322111 2356888887766654 445555 58888876432110
Q ss_pred eeccc-CCCCc---eeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEE
Q psy4869 253 LLLSE-DEPDL---TVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVT 328 (2435)
Q Consensus 253 ~~~~~-~~~~~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~ 328 (2435)
+.... ....+ .+..+... ..| ..| ++...+.+.
T Consensus 297 ~~~~~~~~~~l~~~~i~~i~~D--------~~g-~lW----------------------------------igt~~~Gl~ 333 (795)
T 4a2l_A 297 YSSNPVENGSLSQRSVRSIFMD--------SQG-GMW----------------------------------LGTYFGGLN 333 (795)
T ss_dssp ECCCTTSTTSCSSSCEEEEEEC--------TTS-CEE----------------------------------EEESSSCEE
T ss_pred EecCCCCCCCCCCCcEEEEEEe--------CCc-CEE----------------------------------EEECCCCeE
Confidence 00000 00000 01111000 000 001 011223344
Q ss_pred EEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee------
Q psy4869 329 VYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS------ 402 (2435)
Q Consensus 329 i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~------ 402 (2435)
.++......... ..... + -.-....|.++...++|++. .|+.++-|..||............
T Consensus 334 ~~~~~~~~~~~~-~~~~~-------~---~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 401 (795)
T 4a2l_A 334 YYHPIRNRFKNI-RNIPY-------K---NSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESAR 401 (795)
T ss_dssp EECGGGGSSEEE-CCCTT-------S---SSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------
T ss_pred EeCCCcccceEE-cCCCC-------C---CCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCccc
Confidence 444332211000 00000 0 00124569999999888754 477777899998764321111100
Q ss_pred -CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe----ccCccccccCcccCCCeEEEEEeCCCeEEEEeC
Q psy4869 403 -GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK----GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477 (2435)
Q Consensus 403 -~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~----~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~ 477 (2435)
.....|.++...+++..|..|+.++-|.+||..+++...... .+...|.++...+++..++. +. +-+.+||.
T Consensus 402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig--t~-~Gl~~~~~ 478 (795)
T 4a2l_A 402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG--TL-SALVRFNP 478 (795)
T ss_dssp CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE--ES-SCEEEEET
T ss_pred CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE--ec-CceeEEeC
Confidence 124679999998888767888888889999998876443321 12345666665555654443 33 45888998
Q ss_pred CCCcceEeec-------CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEe-------cCCCCEEEEEEcCCC
Q psy4869 478 RKKNQAVSMN-------NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR-------GHSDTVTGLSLSPDG 543 (2435)
Q Consensus 478 ~~~~~~~~~~-------~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~-------~h~~~V~~i~~spdg 543 (2435)
.+++...... ....|.++...++|++.+. +. +.|..||..+++. .+. .+...|.+|...++|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g 554 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNG 554 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTS
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEE-eC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCC
Confidence 7765433221 1356899999999886554 44 6689999887765 332 234579999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCC
Q psy4869 544 SYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHN 623 (2435)
Q Consensus 544 ~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~ 623 (2435)
+..++. .. -|..||... .....+..........+.++...++|++.+++ ++-|..||.++++.. .+..+.
T Consensus 555 ~lWigT-~~-Gl~~~d~~~-----~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~d 624 (795)
T 4a2l_A 555 IIWVGT-RE-GFYCFNEKD-----KQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESD 624 (795)
T ss_dssp CEEEEE-SS-CEEEEETTT-----TEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGG
T ss_pred CEEEEe-CC-CceeECCCC-----CcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcC
Confidence 865544 34 577888652 22333432222223467888888888877666 355788998877653 332221
Q ss_pred ----CCe--eEEEEcCCCCEEEEEECCCcEEE
Q psy4869 624 ----GSV--NDVQFHPKEPIIMSASSDKTIYL 649 (2435)
Q Consensus 624 ----~~V--~~l~fspd~~~Lasgs~Dg~I~v 649 (2435)
..+ .++...++|. |..|+.+|.+++
T Consensus 625 Gl~~~~f~~~~~~~~~~G~-l~~g~~~Gl~~~ 655 (795)
T 4a2l_A 625 GLQSNQFNTASYCRTSVGQ-MYFGGINGITTF 655 (795)
T ss_dssp TCSCSCEEEEEEEECTTSC-EEEEETTEEEEE
T ss_pred CCccccCccCceeECCCCe-EEEecCCceEEE
Confidence 222 4666777775 455677775553
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-09 Score=137.58 Aligned_cols=303 Identities=12% Similarity=0.008 Sum_probs=201.9
Q ss_pred EEcCCCCEEEEEEC-----CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEEc
Q psy4869 1047 RVSPDSKLLAVSLL-----DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDRTVKVWGL 1111 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~-----dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs----------~Dg~I~vWd~ 1111 (2435)
...|+++.+++... ++.|.++|..+++.+..+.....+ . ++++|||++|+++. .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 45689999999986 578999999999999999866666 4 99999999888765 3678999999
Q ss_pred cCCceeEEEeccC-------CCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeC
Q psy4869 1112 DYGDCHKSLLAHE-------DSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY 1182 (2435)
Q Consensus 1112 ~t~~~~~~l~~h~-------~~V~~v~fsp~~~~l~s~s~--Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 1182 (2435)
.+++.+..+.... .....++|+||+++++++.. ++.|.++|+.+.+.+..+.. .+ . ...+..
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v----~g----~-~~~~P~ 187 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV----PD----C-YHIFPT 187 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CS----E-EEEEEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC----CC----c-ceeecC
Confidence 9999988875321 24567999999999998874 68999999999988777641 11 1 122223
Q ss_pred CCCEEEEEeCCCcEEEEEccC-CceeeEeecc----CCCEE-EEEEe-eCCCEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1183 DSTLIATGSGDRTVKVWGLDY-GDCHKSLLAH----EDSVT-GVTFV-PKTHYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1183 dg~~l~sgs~Dg~V~iwd~~t-~~~~~~~~~h----~~~V~-~i~~s-pd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
..+.+++.+.||.+.+.++.. ++.......+ ..++. ...|. +++++++ .+.+|.|.+.|........
T Consensus 188 g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v----- 261 (386)
T 3sjl_D 188 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF----- 261 (386)
T ss_dssp ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE-----
T ss_pred CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee-----
Confidence 445677777888888888876 5542211111 11221 13454 3554333 4556777777775433210
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec-
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL- 1334 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~- 1334 (2435)
+.-|++.... . .. ... ....+..++++|+++.+.+...
T Consensus 262 -------------------~~~~~~~~~~------~----~~---~g~---------~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 262 -------------------LPAVEALTEA------E----RA---DGW---------RPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp -------------------CCCEESSCHH------H----HH---TTE---------EECSSSCEEEETTTTEEEEEEEE
T ss_pred -------------------ecceeccccc------c----cc---ccc---------cCCCcceeeECCCCCeEEEEecc
Confidence 0001100000 0 00 000 0011123566888888887653
Q ss_pred ---------CCeEEEEEcccceEEEEecCCCCCeEEEEEecCCC-EEEEE-eCCCcEEEEeCCCCceEEEecccccceEE
Q psy4869 1335 ---------DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST-LIATG-SGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1403 (2435)
Q Consensus 1335 ---------dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~-~L~sG-g~Dg~V~iwdl~~gk~~~~~~~h~~~V~~ 1403 (2435)
.++|.++|.++++.+..+.... .+..|++++|++ +|++. ..++.|.++|..+++.++.++.-. .-+.
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~-~p~~ 378 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG-HGPQ 378 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC-SSCC
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC-CCce
Confidence 2579999999999988887433 677899999997 66665 558999999999999998876332 2345
Q ss_pred EEEeeC
Q psy4869 1404 VTFVPK 1409 (2435)
Q Consensus 1404 laf~P~ 1409 (2435)
|.+++|
T Consensus 379 l~~s~d 384 (386)
T 3sjl_D 379 VITTAD 384 (386)
T ss_dssp EEEECC
T ss_pred eEECCc
Confidence 666655
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-11 Score=165.85 Aligned_cols=246 Identities=11% Similarity=-0.014 Sum_probs=169.5
Q ss_pred cccCCcEEEEEECCCCCEEE-----EEeCCCeEEEEecCCceeeEEEeeCCCCCe--eEEEEccCCCEEEEEeCCCe---
Q psy4869 359 EGHGGEIFCSKYHPDGQYIA-----SSGYDRQIFIWSVYGECENIGVMSGHTGAV--MDLKFSTDGCHIFTCSTDQT--- 428 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~La-----sgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V--~~l~~s~dg~~L~s~s~Dg~--- 428 (2435)
.+|...+..++|+|||++|| .|+.+..|++||+.++.... ..+...+ ..++|+|||+.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence 36777899999999999998 44455789999998754320 1122223 68999999999999998776
Q ss_pred ----------EEEEECCCCc----eEEEEeccCccccccCcccCCCeEEEEEeCC-C--eEEEEeCCCCcceEeecCccc
Q psy4869 429 ----------LAVWDLEKGQ----RIKKMKGHSTFVNSCDPVRRGQLLIASGSDD-C--TVKVWDPRKKNQAVSMNNTYQ 491 (2435)
Q Consensus 429 ----------I~vwd~~tg~----~v~~l~~h~~~v~sv~~~~~~~~llasgs~D-g--~I~vwD~~~~~~~~~~~~~~~ 491 (2435)
|++|++.+++ .+.....|...+..+.|+|++..++++...+ + .|.+||...+.......+...
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 273 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA 273 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc
Confidence 9999998876 3333344556777889999998777665544 2 677777655554444444445
Q ss_pred EEEEEECCCCCEEEEEe---cCCeEEEEECCCCcE--EEEE-ecC-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC
Q psy4869 492 VTSVAFNDTAECVLTGG---IDNDIKMWDLRTNSV--VQKL-RGH-SDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV 564 (2435)
Q Consensus 492 v~sv~~sp~g~~l~sgs---~dg~V~lwD~~s~~~--v~~l-~~h-~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~ 564 (2435)
+....+ ++|++++... .++.|.+||+.+++. ...+ ..+ ...+..++|+ ++.++++...|+..+||.+..
T Consensus 274 ~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-- 349 (695)
T 2bkl_A 274 KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL-- 349 (695)
T ss_dssp CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET--
T ss_pred eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC--
Confidence 556666 5666444443 258899999988753 2333 333 4568889998 777888899999999997753
Q ss_pred CCCceEEEEeCcccccccCeEEEEEcCCCCEEEE----ecCCCeEEEEECCCCcE
Q psy4869 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA----GSADKCVYIWDTTTRRI 615 (2435)
Q Consensus 565 ~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Las----gs~Dg~V~iwd~~s~~~ 615 (2435)
.++....+..+. ...+..+.++|+++.|+. ....+.|++||+.+++.
T Consensus 350 -~g~~~~~l~~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 350 -KGKPVRTVQLPG---VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp -TCCEEEECCCSS---SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred -CCCeeEEecCCC---CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 233444443321 124566788999987773 33457899999998874
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=138.59 Aligned_cols=243 Identities=11% Similarity=0.050 Sum_probs=172.1
Q ss_pred CEEEEEEccCCCEEE-EEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCC
Q psy4869 1126 SVTGVTFVPKTHYFF-TTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1204 (2435)
Q Consensus 1126 ~V~~v~fsp~~~~l~-s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~ 1204 (2435)
...++++++++++++ +...++.|.+||........ + ...+...+.++++.++++++++.. ++.|.+||....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~-----~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-L-----PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-C-----CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-E-----eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc
Confidence 678999999998666 44678899999976543211 1 112335678899999998665555 889999998765
Q ss_pred ceeeEee-ccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccc
Q psy4869 1205 DCHKSLL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELV 1283 (2435)
Q Consensus 1205 ~~~~~~~-~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~ 1283 (2435)
.. ..+. .....+.++.+.++++.+++...++.|.+||......... .
T Consensus 98 ~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~----------------------------~--- 145 (270)
T 1rwi_B 98 NQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL----------------------------P--- 145 (270)
T ss_dssp CC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC----------------------------C---
T ss_pred eE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee----------------------------c---
Confidence 43 3332 3335789999999988666666677788776543221100 0
Q ss_pred cccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEE
Q psy4869 1284 SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363 (2435)
Q Consensus 1284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la 1363 (2435)
.........++++++|+.+++...++.|.+|+.+..........+...+..|+
T Consensus 146 ---------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~ 198 (270)
T 1rwi_B 146 ---------------------------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIA 198 (270)
T ss_dssp ---------------------------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEE
T ss_pred ---------------------------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEE
Confidence 00011345688999999777777789999999887665544444446789999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEE
Q psy4869 1364 MSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434 (2435)
Q Consensus 1364 ~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~ 1434 (2435)
++++|.++++...++.|.+|+............+-..+.+|+++|+++++++...++.|.++++...++++
T Consensus 199 ~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~~ 269 (270)
T 1rwi_B 199 VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHHH 269 (270)
T ss_dssp ECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSCC
T ss_pred ECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccccC
Confidence 99999888888888999999997765543333344578999999999999999999999999999876553
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-08 Score=125.98 Aligned_cols=276 Identities=10% Similarity=-0.003 Sum_probs=193.3
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceE
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
....+.++.+.++|+++++...++.|.+||.... .....+..+...+..+++++++..+++...++.|..||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGR-IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCc-eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 4567889999999998888778899999998732 2222233445789999999999877777668899999987 6543
Q ss_pred EE-EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe-ec-CcccEEEEEECCCCCEEEEEecCCeEEEEE
Q psy4869 441 KK-MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS-MN-NTYQVTSVAFNDTAECVLTGGIDNDIKMWD 517 (2435)
Q Consensus 441 ~~-l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~-~~-~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD 517 (2435)
.. +......+..+.+.+++. ++++...++.|..||.. ++.... .. ....+..++++++|++.++...++.|..||
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 22 222335567777777664 55556667899999987 544322 22 345789999999999666666678999999
Q ss_pred CCCCcEEEE-EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEE
Q psy4869 518 LRTNSVVQK-LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYV 596 (2435)
Q Consensus 518 ~~s~~~v~~-l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~L 596 (2435)
. +++.... +..+...+.+++++++|+..++....+.|.+||.. .+... +... .....+..+++.++|++.
T Consensus 174 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-----g~~~~-~~~~--~~~~~~~~i~~d~~g~l~ 244 (300)
T 2qc5_A 174 N-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-----GEISE-YDIP--TPNARPHAITAGKNSEIW 244 (300)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-----CCEEE-EECS--STTCCEEEEEECSTTCEE
T ss_pred C-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-----CcEEE-EECC--CCCCCceEEEECCCCCEE
Confidence 8 5555432 22445678999999999877776677889999973 22222 2111 112357889999999977
Q ss_pred EEecCCCeEEEEECCCCcEEE-EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 597 TAGSADKCVYIWDTTTRRIAY-KLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 597 asgs~Dg~V~iwd~~s~~~~~-~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
++...++.|..||. +++... .+..+...+.++++.+++.+.++.. . .|..++.
T Consensus 245 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 245 FTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 77777899999998 455432 2344556789999999998666554 4 5555543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-09 Score=133.47 Aligned_cols=197 Identities=10% Similarity=0.027 Sum_probs=157.4
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEEecCC-cCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEecc-CCCE
Q psy4869 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK-LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH-EDSV 1127 (2435)
Q Consensus 1050 pdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~-~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h-~~~V 1127 (2435)
..+++|++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|++|+ +.++.|..||. +|+.+..+..+ ...+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 346889999999999999999999999998776 4788999999999888 45788999999 89999998865 3578
Q ss_pred EEEEEccCCCEEEEEeC-CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce
Q psy4869 1128 TGVTFVPKTHYFFTTSK-DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1206 (2435)
Q Consensus 1128 ~~v~fsp~~~~l~s~s~-Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~ 1206 (2435)
..+.+.++++.+++.+. ++.|..+|. +++.+..+........+......+++.++|+++++...++.|..||.+ |+.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 89999999999998887 778888885 566666554211111222345566788999999999999999999998 998
Q ss_pred eeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEE
Q psy4869 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1252 (2435)
Q Consensus 1207 ~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~ 1252 (2435)
+..+..+ ....++...++++.++++..+++|..+|..+++.+..+
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 8888654 44566778889999998888889999998877665444
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-08 Score=122.75 Aligned_cols=278 Identities=10% Similarity=0.059 Sum_probs=194.7
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEE-EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCccee
Q psy4869 1081 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1159 (2435)
Q Consensus 1081 h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~-l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~ 1159 (2435)
....+.++++.++|+++++...++.|.+||.. ++.... +..+...+..+++.++++++++...++.|..||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~- 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF- 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-
Confidence 44578999999999988877678999999988 654432 22334678999999999877776667899999987 432
Q ss_pred EEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeE-eeccCCCEEEEEEeeCCCEEEEEECCCcE
Q psy4869 1160 VTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LLAHEDSVTGVTFVPKTHYFFTTSKDGRV 1238 (2435)
Q Consensus 1160 ~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~-~~~h~~~V~~i~~spd~~~lvsgs~Dg~I 1238 (2435)
..+. .......+.++++.++++++++...++.|..||.. ++.... +......+.++.+.++++.+++...++.|
T Consensus 95 ~~~~----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 95 TEYP----LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp EEEE----CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred EEec----CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 2221 12234678999999999887777668899999988 664422 22345678999999988855555456778
Q ss_pred EEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEE
Q psy4869 1239 KQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1318 (2435)
Q Consensus 1239 ~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1318 (2435)
..||. ..+.. .+.+. .....+.
T Consensus 170 ~~~~~-~g~~~---------------------------~~~~~------------------------------~~~~~~~ 191 (300)
T 2qc5_A 170 GRITN-TGKLE---------------------------EYPLP------------------------------TNAAAPV 191 (300)
T ss_dssp EEECT-TCCEE---------------------------EEECS------------------------------STTCCEE
T ss_pred EEECC-CCcEE---------------------------EeeCC------------------------------CCCCCcc
Confidence 77776 22211 11100 0013467
Q ss_pred EEEecCCcceeEEeecCCeEEEEEcccceEEEE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE-ecc
Q psy4869 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS-LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LLA 1396 (2435)
Q Consensus 1319 ~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~-~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~-~~~ 1396 (2435)
.+++.++|+.+++....+.|.+|+. +++.... +..+...+..++++++|++.++...++.|..|+. +++.... +..
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~ 269 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQT 269 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCS
T ss_pred eEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCc
Confidence 8889999987777667788999998 4443332 3345567899999999997777767899999998 4554432 333
Q ss_pred cccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1397 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1397 h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
....+.++++++++.++++.. . .|..+|.+
T Consensus 270 ~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 270 ENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred cCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 456789999999998777655 4 67766654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-09 Score=133.36 Aligned_cols=282 Identities=12% Similarity=0.042 Sum_probs=198.0
Q ss_pred EEEccCCCEEEEEeC-----CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe----------CCC
Q psy4869 1130 VTFVPKTHYFFTTSK-----DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDR 1194 (2435)
Q Consensus 1130 v~fsp~~~~l~s~s~-----Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs----------~Dg 1194 (2435)
....|+++.+++... ++.|.++|..+.+.+..+. ....+ . +.++|||++++++. .++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~------vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~ 109 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID------GGFLP-N-PVVADDGSFIAHASTVFSRIARGERTD 109 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE------ECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE------CCCCC-c-EEECCCCCEEEEEcccccccccCCCCC
Confidence 445688988888875 6799999999988877764 22334 3 99999999998875 367
Q ss_pred cEEEEEccCCceeeEeeccC-------CCEEEEEEeeCCCEEEEEEC--CCcEEEEECCCCceEEEEeeCCc--ccccCc
Q psy4869 1195 TVKVWGLDYGDCHKSLLAHE-------DSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVTLHFNPN--VYLPLQ 1263 (2435)
Q Consensus 1195 ~V~iwd~~t~~~~~~~~~h~-------~~V~~i~~spd~~~lvsgs~--Dg~I~vwD~~~~~~v~~~~~~~~--~~~~~~ 1263 (2435)
.|.+||..+++.+..+.-.. ..-..+.++||+++++++.. ++.|.++|+.+.+.+.++..... .+....
T Consensus 110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~ 189 (386)
T 3sjl_D 110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP 189 (386)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCC
Confidence 89999999999888775321 23557899999999998874 68999999999999988876543 122223
Q ss_pred eEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccE-EEEEec-CCcceeEEeecCCeEEEE
Q psy4869 1264 IQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV-LCARVS-PDSKLLAVSLLDTTVKIF 1341 (2435)
Q Consensus 1264 ~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~ia~s-pdg~~lavgs~dG~V~v~ 1341 (2435)
..+++.+.||++.+.++........... . .+... ...+ ....|. ++|+++. .+.+|+|+++
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~---------~---~~~~~----~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~ 252 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEGTPEITHT---------E---VFHPE----DEFLINHPAYSQKAGRLVW-PTYTGKIHQI 252 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEEC---------C---CCSCT----TSCBCSCCEEETTTTEEEE-EBTTSEEEEE
T ss_pred ceeEEECCCCCEEEEECCCCCeEEEeec---------c---eeccc----cccccccceeEcCCCcEEE-EeCCCEEEEE
Confidence 4567888899999999864221110000 0 00000 0011 112453 6776554 5568999999
Q ss_pred Ecccce--EEEEec----------CCCCCeEEEEEecCCCEEEEEeC----------CCcEEEEeCCCCceEEEeccccc
Q psy4869 1342 FLDTFK--FFISLY----------GHKLPVLSLDMSYDSTLIATGSG----------DRTVKVWGLDYGDCHKSLLAHED 1399 (2435)
Q Consensus 1342 d~~~~k--~i~~~~----------~h~~~V~~la~spdg~~L~sGg~----------Dg~V~iwdl~~gk~~~~~~~h~~ 1399 (2435)
|..... .+..+. ...+....++++++++.|+.... .+.|.++|+.++++++.+.-- .
T Consensus 253 d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~ 331 (386)
T 3sjl_D 253 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-H 331 (386)
T ss_dssp ECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-E
T ss_pred ECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-C
Confidence 996543 222221 01233445778999998888643 257999999999999987633 2
Q ss_pred ceEEEEEeeCCC-EEEE-EeCCCcEEEEECCCceeEEEEe
Q psy4869 1400 SVTGVTFVPKTH-YFFT-TSKDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1400 ~V~~laf~P~~~-~laS-gg~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
++..|+|+|+++ +|.+ ...++.|.++|..+.+.+++++
T Consensus 332 ~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 332 EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 688999999985 5555 5568999999999999999886
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-09 Score=133.77 Aligned_cols=286 Identities=12% Similarity=0.018 Sum_probs=194.4
Q ss_pred CCCCEEEEEECC-----CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEEccCC
Q psy4869 1050 PDSKLLAVSLLD-----TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDRTVKVWGLDYG 1114 (2435)
Q Consensus 1050 pdg~~Lavg~~d-----g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs----------~Dg~I~vWd~~t~ 1114 (2435)
++++.+++.... +.|.++|..+++.+..+..-..+ .++++||+++|+++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 577888887753 68999999999999999866666 899999999888776 4678999999999
Q ss_pred ceeEEEecc-------CCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCC-C
Q psy4869 1115 DCHKSLLAH-------EDSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD-S 1184 (2435)
Q Consensus 1115 ~~~~~l~~h-------~~~V~~v~fsp~~~~l~s~s~--Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~d-g 1184 (2435)
+.+..+... ......+.|+|++++++++.. ++.|.++|+.+.+.+..+.. .. . ....|+ .
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v-----~g---~--~~~~p~g~ 229 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-----PD---C--YHIFPASP 229 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-----CS---E--EEEEEEET
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc-----CC---c--eeeccCCC
Confidence 998887532 123457899999999999874 57899999999887776641 11 1 122232 2
Q ss_pred CEEEEEeCCCcEEEEEccCCceeeE----eeccCCCE-EEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCccc
Q psy4869 1185 TLIATGSGDRTVKVWGLDYGDCHKS----LLAHEDSV-TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVY 1259 (2435)
Q Consensus 1185 ~~l~sgs~Dg~V~iwd~~t~~~~~~----~~~h~~~V-~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~ 1259 (2435)
+.+++.+.||.+.+.+..+++.... +.....++ ..+.+.+++..++.....+.+.+.|........
T Consensus 230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v--------- 300 (426)
T 3c75_H 230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF--------- 300 (426)
T ss_dssp TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE---------
T ss_pred cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE---------
Confidence 4556666777777777755554422 11111121 124567777766666677777777765432110
Q ss_pred ccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec-----
Q psy4869 1260 LPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL----- 1334 (2435)
Q Consensus 1260 ~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~----- 1334 (2435)
+.-|.+..... .. .. . .......++++||++.+.+...
T Consensus 301 ---------------~~~~~~~~~~~----------i~---~g-------~--~p~g~~~va~s~dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 301 ---------------RAPIEALTEAE----------RA---DD-------W--RPGGWQQTAYHRQSDRIYLLVDQRDEW 343 (426)
T ss_dssp ---------------CCCEESSCTTT----------GG---GT-------E--EECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred ---------------eeeeeeccccc----------cc---cc-------c--ccCCceeeEEcCCCCEEEEEecccccc
Confidence 00011100000 00 00 0 0011113578999887777643
Q ss_pred -----CCeEEEEEcccceEEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCceEEEe
Q psy4869 1335 -----DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST-LIATGS-GDRTVKVWGLDYGDCHKSL 1394 (2435)
Q Consensus 1335 -----dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~-~L~sGg-~Dg~V~iwdl~~gk~~~~~ 1394 (2435)
.+.|.++|..+++.+..+.... ....++|+|||+ ++++.. .++.|.++|..+++.++.+
T Consensus 344 thk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 344 KHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 3579999999999998887433 478899999999 888888 5999999999999999886
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-09 Score=129.91 Aligned_cols=240 Identities=11% Similarity=0.137 Sum_probs=169.8
Q ss_pred CCCCeeEEEEccCCCEEEE-------EeCCCeEEEEECCCCceEEEEe----ccCccccccCcccCCCeEEEEEeCCCeE
Q psy4869 404 HTGAVMDLKFSTDGCHIFT-------CSTDQTLAVWDLEKGQRIKKMK----GHSTFVNSCDPVRRGQLLIASGSDDCTV 472 (2435)
Q Consensus 404 h~~~V~~l~~s~dg~~L~s-------~s~Dg~I~vwd~~tg~~v~~l~----~h~~~v~sv~~~~~~~~llasgs~Dg~I 472 (2435)
.-....+++|++++..+++ ...++.|.+||..+++...... ++...+..+.+.+++..++++.. +..|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3456789999999987777 5678899999988887543222 24456778888887334444443 3478
Q ss_pred EEEeCCCCcceEe-ec-----CcccEEEEEECCCCCEEEEEecC---------------CeEEEEECCCCcEEEEEecCC
Q psy4869 473 KVWDPRKKNQAVS-MN-----NTYQVTSVAFNDTAECVLTGGID---------------NDIKMWDLRTNSVVQKLRGHS 531 (2435)
Q Consensus 473 ~vwD~~~~~~~~~-~~-----~~~~v~sv~~sp~g~~l~sgs~d---------------g~V~lwD~~s~~~v~~l~~h~ 531 (2435)
.+||.. ++.... .. ....+.+++++++|++.++...+ +.|..||.. ++... +..+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCC
Confidence 999988 654433 21 12357899999999988776655 678888876 55433 33334
Q ss_pred CCEEEEEEc----CCCCEEEEE-ECCCcEEEEEcCCCCCCCc-----eEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 532 DTVTGLSLS----PDGSYILSN-AMDNTVRIWDIRPYVPGER-----CVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 532 ~~V~~i~~s----pdg~~las~-s~Dg~I~lWdl~~~~~~~~-----~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
.....++|+ |+|+.|+.+ ..++.|.+||+.. .++ ....+.++. ......++++++|+++++...
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG---PAKIENKKVWGHIPGTH---EGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE---TTEEEEEEEEEECCCCS---SCEEEEEEEBTTCCEEEEEET
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC---CCccccceEEEECCCCC---CCCCCceEECCCCCEEEEEcC
Confidence 457899999 999766655 5689999999762 111 111222111 024677999999999888888
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEE-EEECCCcEEEecCC
Q psy4869 602 DKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIM-SASSDKTIYLGESP 653 (2435)
Q Consensus 602 Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~La-sgs~Dg~I~vWd~~ 653 (2435)
++.|.+||..+++.+..+..+...+.+++|+|+++.|+ +...++.|..|+++
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 89999999988887777777778899999999999555 44566889998876
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.7e-09 Score=132.72 Aligned_cols=285 Identities=13% Similarity=0.039 Sum_probs=198.9
Q ss_pred CCCCEEEEEECC-----CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCc
Q psy4869 1092 YDSTLIATGSGD-----RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS----------KDGRVKQWDADNF 1156 (2435)
Q Consensus 1092 pdg~~L~Sgs~D-----g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s----------~Dg~V~iwD~~~~ 1156 (2435)
++++.+++.... +.|.++|..+++.+.++..-..+ .+.++|+++.++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466666666553 69999999999999999865555 899999999888876 3678999999998
Q ss_pred ceeEEEEEE-EeecccccCeEEEEEeCCCCEEEEEeC--CCcEEEEEccCCceeeEeeccCCCEEEEEEeeC-CCEEEEE
Q psy4869 1157 ERIVTLHFF-ISLYGHKLPVLSLDMSYDSTLIATGSG--DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK-THYFFTT 1232 (2435)
Q Consensus 1157 ~~~~~~~~~-~~~~~h~~~V~~l~~s~dg~~l~sgs~--Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd-~~~lvsg 1232 (2435)
+....+... ............+.++|||++++++.. ++.|.++|+.+++.+..+.... . ....|+ .+.+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEE
Confidence 887766410 000001123456899999999999874 5789999999999888775422 1 233443 3667778
Q ss_pred ECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccc
Q psy4869 1233 SKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK 1312 (2435)
Q Consensus 1233 s~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1312 (2435)
+.||.+.+.+....+...... .+++...
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~----------------------~~~~v~~------------------------------ 263 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNT----------------------EVFHTED------------------------------ 263 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEEC----------------------CCCSCTT------------------------------
T ss_pred cCCCCEEEEECCCCcEEEEee----------------------eeeccCC------------------------------
Confidence 889988888874333221100 0111110
Q ss_pred ccccEEEEEecCCcceeEEeecCCeEEEEEcccceEE--EEecC----------CCCCeEEEEEecCCCEEEEEeC----
Q psy4869 1313 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFF--ISLYG----------HKLPVLSLDMSYDSTLIATGSG---- 1376 (2435)
Q Consensus 1313 ~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i--~~~~~----------h~~~V~~la~spdg~~L~sGg~---- 1376 (2435)
......+.+.++++.++..+..|.|.+.|....... ..+.. .......++++||++.++....
T Consensus 264 -~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~ 342 (426)
T 3c75_H 264 -ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE 342 (426)
T ss_dssp -SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred -CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence 000112467889888888888999999998654321 11110 0112223689999998777643
Q ss_pred ------CCcEEEEeCCCCceEEEecccccceEEEEEeeCCC-EEEEEe-CCCcEEEEECCCceeEEEE
Q psy4869 1377 ------DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH-YFFTTS-KDGRVKQWDADNFERIVTL 1436 (2435)
Q Consensus 1377 ------Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~-~laSgg-~Dg~V~lWd~~~~~~l~~~ 1436 (2435)
++.|.++|..+++.++.+.... ....|+|+|+++ ++++.. .++.|.++|..+.+.++++
T Consensus 343 gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 343 WKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 3579999999999999886432 478999999998 888777 5899999999999999886
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-09 Score=149.79 Aligned_cols=273 Identities=12% Similarity=0.013 Sum_probs=177.3
Q ss_pred CCCCEEEEEeCCCe---EEEEec--C---CceeeEE-----EeeCCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEE
Q psy4869 372 PDGQYIASSGYDRQ---IFIWSV--Y---GECENIG-----VMSGHTGAVMDLKFSTDGCHIFTCSTD-----QTLAVWD 433 (2435)
Q Consensus 372 pdg~~Lasgs~Dg~---I~iwd~--~---~~~~~~~-----~l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~I~vwd 433 (2435)
|+|.+++....++. -.+|.. . ++..... .-.+|...+..++|+|||++|+.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78888776654432 455543 2 2221111 112344478899999999999887654 4699999
Q ss_pred CCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC-------------eEEEEeCCCCcc--eEeec---CcccEEEE
Q psy4869 434 LEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC-------------TVKVWDPRKKNQ--AVSMN---NTYQVTSV 495 (2435)
Q Consensus 434 ~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg-------------~I~vwD~~~~~~--~~~~~---~~~~v~sv 495 (2435)
+.+|+.+... .+...+..+.|+|+ ..++.+...+. .|++|++.++.. ...+. +...+..+
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9999876532 12222467889999 66665543322 489999987653 22222 22358899
Q ss_pred EECCCCCEEEEEecCC-----eEEEEECCCC--cEEEEEecCCCCEEEEEEcCCCCEEEEEECC----CcEEEEEcCCCC
Q psy4869 496 AFNDTAECVLTGGIDN-----DIKMWDLRTN--SVVQKLRGHSDTVTGLSLSPDGSYILSNAMD----NTVRIWDIRPYV 564 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~dg-----~V~lwD~~s~--~~v~~l~~h~~~V~~i~~spdg~~las~s~D----g~I~lWdl~~~~ 564 (2435)
.|+|||++|+....++ .|++||+.++ +....+..+.+.+.... +|+|+.|+..+.+ +.|.+||+....
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999999877554 8999999887 41455555555555553 4899999887764 459999987421
Q ss_pred CCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC-CCcEEEEecC-CCCCeeEEEEcCCCCEEE-EE
Q psy4869 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT-TRRIAYKLPG-HNGSVNDVQFHPKEPIIM-SA 641 (2435)
Q Consensus 565 ~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~-s~~~~~~l~~-h~~~V~~l~fspd~~~La-sg 641 (2435)
......+..+. ..+..+.|+ ++.++++...|+..+||.+. +++.+..+.. +.+.|..+.++|+++.|+ +.
T Consensus 353 --~~~~~l~~~~~----~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 353 --PRFDTVVPESK----DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp --CEEEEEECCCS----SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred --cccEEEecCCC----CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence 22233333322 235567777 66778888889887777554 4666666765 367789999999988555 33
Q ss_pred E---CCCcEEEecCCC
Q psy4869 642 S---SDKTIYLGESPL 654 (2435)
Q Consensus 642 s---~Dg~I~vWd~~~ 654 (2435)
+ ..+.|++||+..
T Consensus 426 ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 426 SSFTQPATVLALDPAT 441 (741)
T ss_dssp EETTEEEEEEEEETTT
T ss_pred cCCCCCCEEEEEECCC
Confidence 2 347899999863
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-08 Score=126.46 Aligned_cols=239 Identities=10% Similarity=0.101 Sum_probs=163.8
Q ss_pred CCcEEEEEECCCCCEEEE-------EeCCCeEEEEecCCceeeEEEe---eCCCCCeeEEEEccC-CCEEEEEeCCCeEE
Q psy4869 362 GGEIFCSKYHPDGQYIAS-------SGYDRQIFIWSVYGECENIGVM---SGHTGAVMDLKFSTD-GCHIFTCSTDQTLA 430 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Las-------gs~Dg~I~iwd~~~~~~~~~~l---~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~ 430 (2435)
-....+++|+++|.++++ +..++.|.+||..++....... .++...+..++++++ ++ |+.+..++.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEE
Confidence 345578999999998888 6788999999975543221111 125577999999998 64 55555555899
Q ss_pred EEECCCCceEEE-Eec----cCccccccCcccCCCeEEEEEeCC---------------CeEEEEeCCCCcceEeecCcc
Q psy4869 431 VWDLEKGQRIKK-MKG----HSTFVNSCDPVRRGQLLIASGSDD---------------CTVKVWDPRKKNQAVSMNNTY 490 (2435)
Q Consensus 431 vwd~~tg~~v~~-l~~----h~~~v~sv~~~~~~~~llasgs~D---------------g~I~vwD~~~~~~~~~~~~~~ 490 (2435)
+||.+ ++.... ... +...+.++.+.+++..++ +...+ +.|..||.. ++.........
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~ 172 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ 172 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEE-EecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC
Confidence 99998 765433 221 123467888888875544 44433 578888876 44433333344
Q ss_pred cEEEEEEC----CCCCEEEEE-ecCCeEEEEECC-CCc-----EEEEEecCC-CCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy4869 491 QVTSVAFN----DTAECVLTG-GIDNDIKMWDLR-TNS-----VVQKLRGHS-DTVTGLSLSPDGSYILSNAMDNTVRIW 558 (2435)
Q Consensus 491 ~v~sv~~s----p~g~~l~sg-s~dg~V~lwD~~-s~~-----~v~~l~~h~-~~V~~i~~spdg~~las~s~Dg~I~lW 558 (2435)
....++|+ |+++.++++ ..++.|.+||.+ +++ ....+.++. ..+..++++++|+++++...++.|.+|
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 56889999 999776666 457899999986 454 223334444 668899999999988888889999999
Q ss_pred EcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEE-EecCCCeEEEEECCC
Q psy4869 559 DIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVT-AGSADKCVYIWDTTT 612 (2435)
Q Consensus 559 dl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~La-sgs~Dg~V~iwd~~s 612 (2435)
|.+. .+.+..+..+. ..+.+++|+++|++|+ +...++.|..|++..
T Consensus 253 d~~~----g~~~~~~~~~~----~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 253 GPDG----GQPKMRIRCPF----EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTC----BSCSEEEECSS----SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCC----CcEeEEEeCCC----CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9863 23333443331 3678999999999555 455678899999764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.3e-06 Score=117.70 Aligned_cols=491 Identities=11% Similarity=0.020 Sum_probs=290.2
Q ss_pred CceEEEEecCCCcEEEEecCC-cEEEEeCCCCceeEEE-e-------CCCeEEEEEEec--CCCEEEEEeCCCeEEEEEc
Q psy4869 886 SEVRALAFSSDNLALVSACAS-QVKIWNRPSLSCLRTI-D-------TGSYALSVCFVP--GDRHVLVGTKDGRLLIVDI 954 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~~~-~V~Iwd~~~~~~~~~l-~-------~~~~v~~vafsp--dg~~Lavg~~dg~V~vwd~ 954 (2435)
..|.+|...++|..|..|..+ .+..||..+.+...-. . ....+.++.... ++ .|.+|+.++.|..||.
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~ 144 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDI 144 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEET
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEEC
Confidence 468999999888834455554 8999999876654321 1 123577777666 44 5677776667889998
Q ss_pred cCCceeeccc-----ccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEccccccccccccccccccccccee
Q psy4869 955 GAGEILEDIP-----AHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVL 1029 (2435)
Q Consensus 955 ~sg~~v~~~~-----~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l 1029 (2435)
+++++..-.. .....|.++....++ .|..+..++-|..++.....+.. +...
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-----------~lwigt~~~Gl~~~~~~~~~~~~--------~~~~---- 201 (781)
T 3v9f_A 145 ATGKFTHYNKSTVPALPSEQTWTATEAEDG-----------KLYIGHVEGGLSILSLNDKSVKH--------FVHD---- 201 (781)
T ss_dssp TTTEEEEESTTTCTTCSCCCEEEEEEEETT-----------EEEEEETTTEEEEEETTTTEEEE--------ECC-----
T ss_pred CCCeEEeeccCcccCCCccceEEEEECCCC-----------CEEEEecCCCeEEEcCCCCceEe--------eecC----
Confidence 8777543211 112457777766664 56667766567778754322100 0000
Q ss_pred eeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec-------CCcCEEEEEEcCCCCEEEEEEC
Q psy4869 1030 SLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG-------HKLPVLSLDMSYDSTLIATGSG 1102 (2435)
Q Consensus 1030 ~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~-------h~~~V~sl~~spdg~~L~Sgs~ 1102 (2435)
..... .-....|.++...++|.+.+ |..+ -+.+|+..+.+....... ....|.+|....+|. |..|..
T Consensus 202 -~~~~~-~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~ 276 (781)
T 3v9f_A 202 -PQNPN-SLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATE 276 (781)
T ss_dssp ---------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEES
T ss_pred -CCCcc-cCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeC
Confidence 00000 01135688999999887655 4444 588899876654332211 235699999887776 555677
Q ss_pred CCcEEEEEccCCceeEEEe--------------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEE--
Q psy4869 1103 DRTVKVWGLDYGDCHKSLL--------------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFI-- 1166 (2435)
Q Consensus 1103 Dg~I~vWd~~t~~~~~~l~--------------~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~-- 1166 (2435)
.+-|.++|..+++...... .....|.++...+++. |..|..++-|..|+....... .+....
T Consensus 277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~ 354 (781)
T 3v9f_A 277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFH-TWSYSPTQ 354 (781)
T ss_dssp SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCE-EEC----C
T ss_pred CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcce-eeccCccc
Confidence 5678899987665332211 1345789999988776 666777778899987654321 111000
Q ss_pred --eecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEe---eccCCCEEEEEEeeCCCEEEEEECCCcEEEE
Q psy4869 1167 --SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL---LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1241 (2435)
Q Consensus 1167 --~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~---~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vw 1241 (2435)
........|.++...++|. |..|+.++-|..||..+++..... ......|.++...++++ |..|+.++-|..+
T Consensus 355 ~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~ 432 (781)
T 3v9f_A 355 MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYY 432 (781)
T ss_dssp CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEE
T ss_pred cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEE
Confidence 0011245689998887775 556676667999998755422111 12345789998877776 5557777778889
Q ss_pred ECCCCceEEEEeeC----Ccc---cccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccccc
Q psy4869 1242 DADNFERIVTLHFN----PNV---YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314 (2435)
Q Consensus 1242 D~~~~~~v~~~~~~----~~~---~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1314 (2435)
|.++.+. ..+... ... +......+..|+. +.+..|+........... . .......
T Consensus 433 ~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~---------------~-~~~~~~~ 494 (781)
T 3v9f_A 433 NTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYD---------------T-SNSQLLE 494 (781)
T ss_dssp CSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEEC---------------T-TTSSCSC
T ss_pred cCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEeccc---------------C-ccccccc
Confidence 8765432 222110 001 1122335666665 567778765322100000 0 0000123
Q ss_pred ccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceE
Q psy4869 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG---HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1391 (2435)
Q Consensus 1315 ~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~---h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~ 1391 (2435)
..+.++...++|.. .+|+.++.|..||.+..+...-... ....|.++...++|++.+... +|.|..||.++++..
T Consensus 495 ~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 495 NFVRSIAQDSEGRF-WIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ 572 (781)
T ss_dssp SCEEEEEECTTCCE-EEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE
T ss_pred ceeEEEEEcCCCCE-EEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE
Confidence 57889998888864 4566655577888776654332211 235689999999998766554 777688998887654
Q ss_pred EEeccc---ccceEEEEEeeCCCEEEEEeCCCcEEEEECCCce
Q psy4869 1392 KSLLAH---EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1392 ~~~~~h---~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
.-...+ ...|.++..++++.+.+++ ++.|..+|..+.+
T Consensus 573 ~~~~~~gl~~~~i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~~ 613 (781)
T 3v9f_A 573 VFQRKEGLPNTHIRAISEDKNGNIWAST--NTGISCYITSKKC 613 (781)
T ss_dssp EECGGGTCSCCCCCEEEECSSSCEEEEC--SSCEEEEETTTTE
T ss_pred EccccCCCCCceEEEEEECCCCCEEEEc--CCceEEEECCCCc
Confidence 322111 2368899999999877754 3458888887543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-06 Score=117.35 Aligned_cols=489 Identities=11% Similarity=0.051 Sum_probs=287.6
Q ss_pred CCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe---------CCCeEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q psy4869 885 HSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID---------TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG 955 (2435)
Q Consensus 885 ~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~---------~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~ 955 (2435)
+..|.+|+-.++|. |-.|..+.+..||-.+.+.... . ....+.++....+|+.|.+|+.++.|..||.+
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~GL~ryDG~~f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~ 95 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEGLNKFDGTRFITYYK-EEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYE 95 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSCEEEECSSSEEEECC-CSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETT
T ss_pred cCEeEEEEECCCCC-EEEccCCcCccccCCceEEEEc-CCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCC
Confidence 35799999988884 5566666677788554222111 1 12358888887777757788888679999998
Q ss_pred CCceeecc-c---c---cccceeEEEEec--CCCCCCCcCCcceEEEEEeCCCeEEEEEccccccccccccccccccccc
Q psy4869 956 AGEILEDI-P---A---HSQELWSVAMLP--DQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSH 1026 (2435)
Q Consensus 956 sg~~v~~~-~---~---h~~~V~sv~~s~--d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~ 1026 (2435)
+++...-. . . ....|.++.... ++ .|..+..++-|..++.....+.. +.. .
T Consensus 96 ~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-----------~lwi~t~~~gl~~~~~~~~~~~~--------~~~-~ 155 (781)
T 3v9f_A 96 TQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-----------GLWVCTYYRGIEYLDIATGKFTH--------YNK-S 155 (781)
T ss_dssp TTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-----------EEEEEESSSCEEEEETTTTEEEE--------EST-T
T ss_pred CCeEEeeccccCCCCCcccCcceEEEecCccCC-----------CEEEEECCCCeeEEECCCCeEEe--------ecc-C
Confidence 87754321 0 0 123577777665 44 56666644557777754222100 000 0
Q ss_pred ceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec-------CCcCEEEEEEcCCCCEEEE
Q psy4869 1027 KVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG-------HKLPVLSLDMSYDSTLIAT 1099 (2435)
Q Consensus 1027 ~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~-------h~~~V~sl~~spdg~~L~S 1099 (2435)
.........|.++...++|.+.+ |..++-+..|+..+.+...-... ....|.+|...+++.+.+
T Consensus 156 -------~~~~l~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi- 226 (781)
T 3v9f_A 156 -------TVPALPSEQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI- 226 (781)
T ss_dssp -------TCTTCSCCCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-
T ss_pred -------cccCCCccceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-
Confidence 00001124588888887776554 66565688899877654332111 134699999888887655
Q ss_pred EECCCcEEEEEccCCceeEEEe-------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEE----EEEe-
Q psy4869 1100 GSGDRTVKVWGLDYGDCHKSLL-------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH----FFIS- 1167 (2435)
Q Consensus 1100 gs~Dg~I~vWd~~t~~~~~~l~-------~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~----~~~~- 1167 (2435)
|..+ -|.+||..+++...... .....|.++...+++. |..|...+-|.++|..+........ .+..
T Consensus 227 gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~ 304 (781)
T 3v9f_A 227 GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREG 304 (781)
T ss_dssp EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBC
T ss_pred EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCC
Confidence 5555 68999987665432211 1245689998887766 5556665678889887643211100 0000
Q ss_pred ---ecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEee---------ccCCCEEEEEEeeCCCEEEEEECC
Q psy4869 1168 ---LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL---------AHEDSVTGVTFVPKTHYFFTTSKD 1235 (2435)
Q Consensus 1168 ---~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~---------~h~~~V~~i~~spd~~~lvsgs~D 1235 (2435)
.......|.++....+|. |..|..++-|..++...+....... -....|.++...++++ |..|+.+
T Consensus 305 ~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~ 382 (781)
T 3v9f_A 305 DNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDG 382 (781)
T ss_dssp SSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBS
T ss_pred CCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCC
Confidence 011345799999888775 6667777779999987655322110 1235689998877766 6677777
Q ss_pred CcEEEEECCCCceEEEE---eeCCc-cc---ccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeec
Q psy4869 1236 GRVKQWDADNFERIVTL---HFNPN-VY---LPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHT 1308 (2435)
Q Consensus 1236 g~I~vwD~~~~~~v~~~---~~~~~-~~---~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1308 (2435)
+-|..||.......... ..... ++ ......|..|+.++.+..++.+..... ....
T Consensus 383 ~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~------------------~~~~ 444 (781)
T 3v9f_A 383 GGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ------------------IIEL 444 (781)
T ss_dssp SCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE------------------ECCS
T ss_pred CcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE------------------Eecc
Confidence 77888987643211100 00000 10 112334566666666777765321110 0000
Q ss_pred ccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCC-----CCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy4869 1309 RTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGH-----KLPVLSLDMSYDSTLIATGSGDRTVKVW 1383 (2435)
Q Consensus 1309 ~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h-----~~~V~~la~spdg~~L~sGg~Dg~V~iw 1383 (2435)
. ......|.++...++|.. .+|+. +.|.+|+..+++........ ...|.++...++|++.+....+| |..|
T Consensus 445 ~-~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~ 520 (781)
T 3v9f_A 445 E-KNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIY 520 (781)
T ss_dssp T-TTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEE
T ss_pred C-CCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEE
Confidence 0 112356888888888764 44555 56888998776543322222 35789999999998766544345 6778
Q ss_pred eCCCCceEEEecc---cccceEEEEEeeCCCEEEEEeCCCcEEEEECCCce
Q psy4869 1384 GLDYGDCHKSLLA---HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1384 dl~~gk~~~~~~~---h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
+.+.++...-... ....|.+|..++++.+.++.. +|.|..||..+.+
T Consensus 521 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 521 TPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp CTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred eCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 8877765432211 235799999999998777554 6655888887643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-08 Score=129.05 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=166.6
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC-eEEEEeCCCCcceE
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC-TVKVWDPRKKNQAV 484 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg-~I~vwD~~~~~~~~ 484 (2435)
.....|+|+++++++++...++.|++||..+++........ .... ++|.+++..++++....+ .|.+||...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46788999999987777767789999999877765555442 3333 888888876555444333 89999987655433
Q ss_pred ee----c-CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE----EecCCCCE--EEEEEcCC-CCEEEEEECC
Q psy4869 485 SM----N-NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK----LRGHSDTV--TGLSLSPD-GSYILSNAMD 552 (2435)
Q Consensus 485 ~~----~-~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~----l~~h~~~V--~~i~~spd-g~~las~s~D 552 (2435)
.+ . ....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..|+|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 2 445678899999666666677889999999988764332 22222222 39999995 5555566678
Q ss_pred CcEEEEEcCCCCCCCceEEEEeCcc---c--------ccccCeEEEEEcCCCCEEEEec-CCCeEEEEECCCCcEEEEec
Q psy4869 553 NTVRIWDIRPYVPGERCVKVMSGHQ---H--------NFEKNLLRCAWSVSGLYVTAGS-ADKCVYIWDTTTRRIAYKLP 620 (2435)
Q Consensus 553 g~I~lWdl~~~~~~~~~v~~~~~h~---~--------~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iwd~~s~~~~~~l~ 620 (2435)
++|+.||... . +..+.++. . ..-.....++++++|+++++-. .++.|+.||..+++.. .+.
T Consensus 289 ~~I~~~~~~g-----~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~ 361 (409)
T 3hrp_A 289 SSVYKITPDG-----E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVA 361 (409)
T ss_dssp TEEEEECTTC-----C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEE
T ss_pred CEEEEEecCC-----C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEe
Confidence 9999999762 2 23333321 0 0012467899999999888888 8999999998888653 333
Q ss_pred CC---------------CCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 621 GH---------------NGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 621 ~h---------------~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
++ -.....|++.+++.++++-..++.|+.+++
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 43 245889999999888888888888887654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=135.36 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=136.7
Q ss_pred ceEEEEecCCCcEEEEecCCcEEEEeCCCCc-----------eeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q psy4869 887 EVRALAFSSDNLALVSACASQVKIWNRPSLS-----------CLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG 955 (2435)
Q Consensus 887 ~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~-----------~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~ 955 (2435)
+++.|++++.+..+|+|....++||+++..+ ....++.+. +..|+| |+++|+++ .++.|.+||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 6888999999999999999999999977554 224556666 999999 99999999 88999999998
Q ss_pred CCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeecc
Q psy4869 956 AGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1035 (2435)
Q Consensus 956 sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1035 (2435)
+.........|..++.++.+.+. .++++..||.|.+|++..... .
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~~p------------~~av~~~dG~L~v~dl~~~~~-----------------~------ 159 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNVNN------------TLVILNSVNDLSALDLRTKST-----------------K------ 159 (388)
T ss_dssp STTCEEEEEECSSCEEEEEECSS------------EEEEEETTSEEEEEETTTCCE-----------------E------
T ss_pred hhhccCccceeecceeeEEecCC------------CEEEEECCCCEEEEEccCCcc-----------------c------
Confidence 76655556677777887776653 388889999999999863221 0
Q ss_pred ccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE--EEEE------e---cCCcCEEEEEEcCCCCEEEE
Q psy4869 1036 TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF--FISL------Y---GHKLPVLSLDMSYDSTLIAT 1099 (2435)
Q Consensus 1036 ~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~--~~~l------~---~h~~~V~sl~~spdg~~L~S 1099 (2435)
.+...|+|++|||+| +++|..||.+++|+.+..+. ..++ . +|...|.+|.|.+++.+|++
T Consensus 160 --~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 160 --QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred --cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 123579999999999 78899999999999888775 5666 3 47788999999999888875
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.7e-08 Score=123.52 Aligned_cols=305 Identities=10% Similarity=0.017 Sum_probs=192.0
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEEecC---------CcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe
Q psy4869 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGH---------KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1121 (2435)
Q Consensus 1051 dg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h---------~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~ 1121 (2435)
++..|++++.++.|..+|..+++.+..+... ...+.+.- ..++..++.++.++.|..+|.++|+.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 3667888888899999999999887766542 22332221 2245678889999999999999999888776
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q psy4869 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1122 ~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~ 1201 (2435)
........... .+..+++++.++.|..+|..+++.+............ ......... +..++++..++.|..+|.
T Consensus 131 ~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 131 VAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL-RGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp CSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC------CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred CCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee-cCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 54322212222 2457888889999999999999887766421000000 000111222 457888888999999999
Q ss_pred cCCceeeEeeccCCC----EE---EEEEee--CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECC
Q psy4869 1202 DYGDCHKSLLAHEDS----VT---GVTFVP--KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGD 1272 (2435)
Q Consensus 1202 ~t~~~~~~~~~h~~~----V~---~i~~sp--d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d 1272 (2435)
.+|+.+......... +. .+...| .+..++.++.++.+..+|.++++.+......
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----------------- 268 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----------------- 268 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-----------------
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-----------------
Confidence 999987665432110 00 010111 2455666667777777777655433221100
Q ss_pred CeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEe
Q psy4869 1273 KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL 1352 (2435)
Q Consensus 1273 ~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~ 1352 (2435)
....+. .++..+.+++.+|.|..+|..+++.+...
T Consensus 269 -------------------------------------------~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 269 -------------------------------------------SVNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp -------------------------------------------CEEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred -------------------------------------------CCCCce--EECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 011111 23567777888999999999999887766
Q ss_pred cCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1353 YGH-KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1353 ~~h-~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
... ...+..+.. .+..|+.++.+|.|+++|..+|+.+...+.....+.+.... .+..|..++.||.|..||
T Consensus 304 ~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 304 SDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred cccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 522 222222222 35788899999999999999999887766533333322222 255777789999999987
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-09 Score=136.64 Aligned_cols=171 Identities=11% Similarity=0.060 Sum_probs=137.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCce----------eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC----------ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~----------~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd 433 (2435)
.++.+++++...++++|+.++ +++|++.... ... ....+.. |+.|+| |+.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 578899999999999999985 5569865322 111 1223566 999999 88999998 889999999
Q ss_pred CCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeE
Q psy4869 434 LEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDI 513 (2435)
Q Consensus 434 ~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V 513 (2435)
+.+.........|...+.++.+.+. . ++.+..||.|.+||+..+.... ....|.|++|+|+| ++.|..||.+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9887766677777777877766554 3 7788999999999999776543 45689999999999 7889999999
Q ss_pred EEEECCCCcE--EEEE------e---cCCCCEEEEEEcCCCCEEEE
Q psy4869 514 KMWDLRTNSV--VQKL------R---GHSDTVTGLSLSPDGSYILS 548 (2435)
Q Consensus 514 ~lwD~~s~~~--v~~l------~---~h~~~V~~i~~spdg~~las 548 (2435)
++|+...++. ..++ . +|...|.+|.|.+++.++++
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999988875 5666 3 47889999999999988885
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-07 Score=120.18 Aligned_cols=305 Identities=11% Similarity=0.067 Sum_probs=192.4
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCC----------CeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTG----------SYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPA 965 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~----------~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~ 965 (2435)
+++.++...++.|..+|..+++.+.....+ ..+.+ ....++..|++++.++.|+.+|.++|+++.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 444444444689999999999998777652 22321 2223567888899999999999999998866654
Q ss_pred cccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEE
Q psy4869 966 HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1045 (2435)
Q Consensus 966 h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 1045 (2435)
........... + ..++.++.++.|..+|...++..+....... ... .. ....
T Consensus 132 ~~~~~~~p~~~-~-----------~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~-------~~~------~~---~~~~ 183 (376)
T 3q7m_A 132 AGEALSRPVVS-D-----------GLVLIHTSNGQLQALNEADGAVKWTVNLDMP-------SLS------LR---GESA 183 (376)
T ss_dssp SSCCCSCCEEE-T-----------TEEEEECTTSEEEEEETTTCCEEEEEECCC------------------C---CCCC
T ss_pred CCceEcCCEEE-C-----------CEEEEEcCCCeEEEEECCCCcEEEEEeCCCC-------cee------ec---CCCC
Confidence 33221112222 2 3678888899999999876654332111000 000 00 0001
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCc-------CEEEEEEcC--CCCEEEEEECCCcEEEEEccCCce
Q psy4869 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL-------PVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDC 1116 (2435)
Q Consensus 1046 l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~-------~V~sl~~sp--dg~~L~Sgs~Dg~I~vWd~~t~~~ 1116 (2435)
.... +..++++..++.+..+|..+++.+........ .+..+.-.| .+..++.++.++.|..+|.++|+.
T Consensus 184 ~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 184 PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI 261 (376)
T ss_dssp CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE
T ss_pred cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE
Confidence 1111 45677888889999999999888776653211 000011111 246778888899999999999998
Q ss_pred eEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcE
Q psy4869 1117 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196 (2435)
Q Consensus 1117 ~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 1196 (2435)
+..... .....+.. ++..++.++.++.|..+|..+++...... ......+..... .+..|++++.+|.|
T Consensus 262 ~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~-----~~~~~~~~~~~~--~~~~l~v~~~~g~l 330 (376)
T 3q7m_A 262 MWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS-----DLLHRLLTSPVL--YNGNLVVGDSEGYL 330 (376)
T ss_dssp EEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC-----TTTTSCCCCCEE--ETTEEEEECTTSEE
T ss_pred EeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec-----ccCCCcccCCEE--ECCEEEEEeCCCeE
Confidence 876643 22344443 46678888889999999999988765432 011112222222 25688999999999
Q ss_pred EEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEEC
Q psy4869 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1243 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~ 1243 (2435)
+++|..+++.+..+......+...-.. .+..|+.++.+|.|..||.
T Consensus 331 ~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 331 HWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp EEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEEC
T ss_pred EEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEeC
Confidence 999999999887766533333322122 2456888888999988863
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.4e-09 Score=145.00 Aligned_cols=246 Identities=10% Similarity=-0.002 Sum_probs=164.6
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCe-----
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYD-----RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQT----- 428 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~D-----g~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~----- 428 (2435)
.+|...+..++|+|||++||.+..+ ..|++||+.++....... +...+..++|+|| +.|+.++.|+.
T Consensus 159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 3455578899999999999887654 469999998764322111 1222357899999 99988887654
Q ss_pred ---------EEEEECCCCce--EEEEe--ccCccccccCcccCCCeEEEEEeC----CCeEEEEeCCCC--c-ceEeecC
Q psy4869 429 ---------LAVWDLEKGQR--IKKMK--GHSTFVNSCDPVRRGQLLIASGSD----DCTVKVWDPRKK--N-QAVSMNN 488 (2435)
Q Consensus 429 ---------I~vwd~~tg~~--v~~l~--~h~~~v~sv~~~~~~~~llasgs~----Dg~I~vwD~~~~--~-~~~~~~~ 488 (2435)
|++|++.+++. ...+. .+...+..+.|+|++..++++... ...|.+||+.++ + ......+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 89999987752 22232 333457788899999877766643 348999999876 4 3333333
Q ss_pred cccEEEEEECCCCCEEEEEec----CCeEEEEECCCC--cEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 489 TYQVTSVAFNDTAECVLTGGI----DNDIKMWDLRTN--SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 489 ~~~v~sv~~sp~g~~l~sgs~----dg~V~lwD~~s~--~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
...+.... +|+|+.|+..+. ++.|.+||+.++ +....+..+...+..+.|. ++.++++...|+..+||.+..
T Consensus 316 ~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 316 LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence 33444443 489998888765 356999999885 3334444555567778887 667778888999988887652
Q ss_pred CCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEE----ecCCCeEEEEECCCCcE
Q psy4869 563 YVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA----GSADKCVYIWDTTTRRI 615 (2435)
Q Consensus 563 ~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Las----gs~Dg~V~iwd~~s~~~ 615 (2435)
.+.....+..+. ...+..+.++|+++.|+. ....+.|++||+.+++.
T Consensus 394 ---~g~~~~~l~~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 394 ---DGKPAGAVSLPG---IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ---TSCEEEECBCSS---SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred ---CCCceeeccCCC---CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 233444443221 235778899999986663 23457899999998873
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-09 Score=133.00 Aligned_cols=271 Identities=11% Similarity=0.040 Sum_probs=172.2
Q ss_pred cCEEEEEEcCCCCEEEEEEC--CCcEEEEEccCCceeEEEe-------ccCCCEEEEEEccCCCEEEEEeC-----CCcE
Q psy4869 1083 LPVLSLDMSYDSTLIATGSG--DRTVKVWGLDYGDCHKSLL-------AHEDSVTGVTFVPKTHYFFTTSK-----DGRV 1148 (2435)
Q Consensus 1083 ~~V~sl~~spdg~~L~Sgs~--Dg~I~vWd~~t~~~~~~l~-------~h~~~V~~v~fsp~~~~l~s~s~-----Dg~V 1148 (2435)
.....++++++|+++++... ++.++||.+.+++ +..+. .+-..+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999999888642 3436666665554 33221 24567999999999876555443 5789
Q ss_pred EEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe----CCCcEEEEEccCCceeeEeeccCCCEE-EEEEe
Q psy4869 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS----GDRTVKVWGLDYGDCHKSLLAHEDSVT-GVTFV 1223 (2435)
Q Consensus 1149 ~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs----~Dg~V~iwd~~t~~~~~~~~~h~~~V~-~i~~s 1223 (2435)
.+||+.+++....+........+...+..+++++++..++.+. .++.|.+||+.+++..+.+..|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 9999988775555431101112234578999998655555443 578999999998887665544432110 02233
Q ss_pred eCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccccccccccccccccee
Q psy4869 1224 PKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVL 1303 (2435)
Q Consensus 1224 pd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 1303 (2435)
+++..+.+...++.+. .|.
T Consensus 176 ~~g~~~~~~~~~g~~~-------------------------------------~~~------------------------ 194 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVI-------------------------------------RPH------------------------ 194 (343)
T ss_dssp ETTEECBEECTTSCEE-------------------------------------CCC------------------------
T ss_pred ECCEEEEeccCCCcee-------------------------------------cee------------------------
Confidence 3443333333333322 221
Q ss_pred eeeecccccccccEEEEEecCCcceeEEeecCC-eEEEEEcccc--------eEEE--EecCCCCCeEEEEEecCCCEEE
Q psy4869 1304 SLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDT-TVKIFFLDTF--------KFFI--SLYGHKLPVLSLDMSYDSTLIA 1372 (2435)
Q Consensus 1304 ~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG-~V~v~d~~~~--------k~i~--~~~~h~~~V~~la~spdg~~L~ 1372 (2435)
..+..++|+|||+.|.++...+ ++..++.... +... ...++.+....++++++|++++
T Consensus 195 -----------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~v 263 (343)
T 2qe8_A 195 -----------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYV 263 (343)
T ss_dssp -----------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEE
T ss_pred -----------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEE
Confidence 1245689999999888877666 5555554211 0000 1113344566789999999999
Q ss_pred EEeCCCcEEEEeCCCCceEEEec-ccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1373 TGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1373 sGg~Dg~V~iwdl~~gk~~~~~~-~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
+...++.|.+||..+|+...... .+-.++.+|+|.+++.++++.+..+.+.+|.
T Consensus 264 a~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 264 GDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 99999999999996676433332 2355799999999999998887766665554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.7e-08 Score=124.69 Aligned_cols=237 Identities=11% Similarity=0.103 Sum_probs=165.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC--eEEEEECCCCceE
Q psy4869 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ--TLAVWDLEKGQRI 440 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg--~I~vwd~~tg~~v 440 (2435)
.....|+|+++|+++++...++.|++||..+..... .... ..... ++|+++++.|+++..++ .|.+||...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-VHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-EEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-eecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 356789999999988887778999999987643322 2222 23334 99999999999988866 8999998776554
Q ss_pred EEE----eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe----ecCcccE---EEEEECCC-CCEEEEEe
Q psy4869 441 KKM----KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS----MNNTYQV---TSVAFNDT-AECVLTGG 508 (2435)
Q Consensus 441 ~~l----~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~----~~~~~~v---~sv~~sp~-g~~l~sgs 508 (2435)
..+ ..+...+.++++.+.+..+++ +..++.|..||...+..... ....... ..++|+|+ +.++++-.
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 444 224556788888886556666 56688999999987654332 1111111 28999996 44455555
Q ss_pred cCCeEEEEECCCCcEEEEEecCC---------------CCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEE
Q psy4869 509 IDNDIKMWDLRTNSVVQKLRGHS---------------DTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKV 572 (2435)
Q Consensus 509 ~dg~V~lwD~~s~~~v~~l~~h~---------------~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~ 572 (2435)
.++.|+.||.... +..+.++. ....+|+++|+|+++++-. .+++|+.||+.. +. +..
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~----G~-v~~ 359 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD----GY-VST 359 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT----TE-EEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC----CE-EEE
Confidence 6789999997654 33443332 3578999999999888877 899999999652 22 344
Q ss_pred EeCcccc-----------cccCeEEEEEcCCCCEEEEecCCCeEEEEEC
Q psy4869 573 MSGHQHN-----------FEKNLLRCAWSVSGLYVTAGSADKCVYIWDT 610 (2435)
Q Consensus 573 ~~~h~~~-----------~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~ 610 (2435)
+.++... .-.....++++++|.++++-..++.|+.+++
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 4333100 0135788999999988888888899988775
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-08 Score=137.57 Aligned_cols=317 Identities=15% Similarity=0.124 Sum_probs=204.6
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCCe------------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSY------------ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI 963 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~------------v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~ 963 (2435)
+|+.+++..++.|.-+|..+++.+..++.... ...+++ ++..|++++.|+.|+.+|.++|+++..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 55555555568899999999999988874321 123333 4678889999999999999999998777
Q ss_pred ccc-c----cceeEEEEecCCCCCCCcCCcceEEEEEeC------CCeEEEEEcccccccccccccccccccc-------
Q psy4869 964 PAH-S----QELWSVAMLPDQFNPNVYLPLQIQVVTGGG------DKSVKLWQLELVSVNREADEETKDVSRS------- 1025 (2435)
Q Consensus 964 ~~h-~----~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~------Dg~V~lW~l~~~~~~~~~~~~~~~~~~~------- 1025 (2435)
..+ . ..+.+.-...+ ..++.+.. +|.|+.+|...++..+............
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~-----------~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFK-----------GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEET-----------TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred cCCcCcCcCcccccCcEEEC-----------CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 654 1 01111000111 35555543 6999999998777554422111100000
Q ss_pred --cceeee-eecccc-ccCCCEEEEEEcCCCCEEEEEECCC-------------------cEEEEEcCCCeEEEEEec--
Q psy4869 1026 --HKVLSL-LHTRTL-KLEEQVLCARVSPDSKLLAVSLLDT-------------------TVKIFFLDTFKFFISLYG-- 1080 (2435)
Q Consensus 1026 --~~~l~~-~~~~~~-~~~~~v~~l~~spdg~~Lavg~~dg-------------------~V~i~d~~~~~~~~~l~~-- 1080 (2435)
...... ...... ........+++++++.+|+++..++ .|..+|.++++.+..++.
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~ 303 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP 303 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST
T ss_pred cccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC
Confidence 000000 000000 0111223578999999999887664 499999999998887763
Q ss_pred CC-------cCEEEEEEcCCC---CEEEEEECCCcEEEEEccCCceeEEEeccCC-----------CE------------
Q psy4869 1081 HK-------LPVLSLDMSYDS---TLIATGSGDRTVKVWGLDYGDCHKSLLAHED-----------SV------------ 1127 (2435)
Q Consensus 1081 h~-------~~V~sl~~spdg---~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~-----------~V------------ 1127 (2435)
|. ....-+....+| ..++.++.+|.|+++|..+|+.+..+..... .+
T Consensus 304 ~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 383 (677)
T 1kb0_A 304 GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQ 383 (677)
T ss_dssp TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCE
T ss_pred CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCcc
Confidence 21 112223344477 6789999999999999999998877652210 01
Q ss_pred ------------EEEEEccCCCEEEEEeCC-------------------------------------------CcEEEEe
Q psy4869 1128 ------------TGVTFVPKTHYFFTTSKD-------------------------------------------GRVKQWD 1152 (2435)
Q Consensus 1128 ------------~~v~fsp~~~~l~s~s~D-------------------------------------------g~V~iwD 1152 (2435)
..++|+|+..++++...+ +.|..||
T Consensus 384 ~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D 463 (677)
T 1kb0_A 384 DAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD 463 (677)
T ss_dssp ECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred EECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence 146888888888775431 7799999
Q ss_pred CCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccC-CCEEEEEEeeCCCEEEE
Q psy4869 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE-DSVTGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~-~~V~~i~~spd~~~lvs 1231 (2435)
+.+++.+.... +..++....+...+..++.++.||.+++||.++++.+..+.... ....-+.|..+++++++
T Consensus 464 ~~tG~~~W~~~-------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 464 PVAQKAAWSVE-------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTTTEEEEEEE-------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCcEEeecC-------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 99998877664 22334444556678889999999999999999999998887443 23344556677766554
Q ss_pred E
Q psy4869 1232 T 1232 (2435)
Q Consensus 1232 g 1232 (2435)
.
T Consensus 537 ~ 537 (677)
T 1kb0_A 537 V 537 (677)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.01 E-value=9.7e-08 Score=117.73 Aligned_cols=232 Identities=11% Similarity=0.038 Sum_probs=158.5
Q ss_pred CCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc
Q psy4869 403 GHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN 481 (2435)
Q Consensus 403 ~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~ 481 (2435)
.+........|++++. .+++...++.|+.||..+++. ..+. ....+..+.+.+++. ++++ . +..|.+||..+++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTTTE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCC-EEEE-E-CCeEEEEECCCCc
Confidence 3445567889999655 455555688999999987765 3332 345678888999887 3333 2 5689999998776
Q ss_pred ceEeec-----CcccEEEEEECCCCCEEEEEec-----------CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCE
Q psy4869 482 QAVSMN-----NTYQVTSVAFNDTAECVLTGGI-----------DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSY 545 (2435)
Q Consensus 482 ~~~~~~-----~~~~v~sv~~sp~g~~l~sgs~-----------dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~ 545 (2435)
...... ....++.++++|+|++.++... .+.|+.+|.. ++.. .+..+-...+.++|+||++.
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECTTSCE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcCCCCE
Confidence 443322 2345889999999996665432 2345555543 3332 23334456789999999997
Q ss_pred EE-EEECCCcEEEEEcCCCCCCCce--EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCC
Q psy4869 546 IL-SNAMDNTVRIWDIRPYVPGERC--VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGH 622 (2435)
Q Consensus 546 la-s~s~Dg~I~lWdl~~~~~~~~~--v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h 622 (2435)
|+ +.+.++.|.+||+... .+.. ...+.... ........+++.++|++.++...++.|.+||..+++++..+..+
T Consensus 163 lyv~~~~~~~i~~~~~d~~--~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQ--TGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EEEEEGGGTEEEEEEECTT--TCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred EEEecCCCCcEEEEeccCC--CCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 75 4556889999998421 1211 11111110 11134678899999998888888899999999999999999888
Q ss_pred CCCeeEEEEc-CCCCEEEEEECC
Q psy4869 623 NGSVNDVQFH-PKEPIIMSASSD 644 (2435)
Q Consensus 623 ~~~V~~l~fs-pd~~~Lasgs~D 644 (2435)
...+++++|. |+++.|+.++..
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCceEEEEeCCCCCEEEEEcCC
Confidence 7889999998 888877666643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.00 E-value=2.7e-07 Score=113.70 Aligned_cols=230 Identities=11% Similarity=0.023 Sum_probs=156.8
Q ss_pred eeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEc
Q psy4869 970 LWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1049 (2435)
Q Consensus 970 V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 1049 (2435)
..+..|.++. +..+++...++.|..|+.+.... ........+.+++++
T Consensus 15 ~Egp~w~~~~---------~~l~~~d~~~~~i~~~d~~~~~~-----------------------~~~~~~~~~~~i~~~ 62 (297)
T 3g4e_A 15 GESPVWEEVS---------NSLLFVDIPAKKVCRWDSFTKQV-----------------------QRVTMDAPVSSVALR 62 (297)
T ss_dssp EEEEEEETTT---------TEEEEEETTTTEEEEEETTTCCE-----------------------EEEECSSCEEEEEEB
T ss_pred ccCCeEECCC---------CEEEEEECCCCEEEEEECCCCcE-----------------------EEEeCCCceEEEEEC
Confidence 3567788753 24666666789999998753221 012234678999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEEec----CCcCEEEEEEcCCCCEEEEEECC---------CcEEEEEccCCce
Q psy4869 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYG----HKLPVLSLDMSYDSTLIATGSGD---------RTVKVWGLDYGDC 1116 (2435)
Q Consensus 1050 pdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~----h~~~V~sl~~spdg~~L~Sgs~D---------g~I~vWd~~t~~~ 1116 (2435)
++|++++ +. ++.|.+||.++++....... ....+.+++++++|+++++...+ ..-.+|.+.....
T Consensus 63 ~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 140 (297)
T 3g4e_A 63 QSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH 140 (297)
T ss_dssp TTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC
T ss_pred CCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC
Confidence 9999544 44 56799999988765433322 22458899999999977654322 2345665543322
Q ss_pred eEEEeccCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCC--CcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC
Q psy4869 1117 HKSLLAHEDSVTGVTFVPKTHYFFT-TSKDGRVKQWDAD--NFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1193 (2435)
Q Consensus 1117 ~~~l~~h~~~V~~v~fsp~~~~l~s-~s~Dg~V~iwD~~--~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 1193 (2435)
+..+..+....+.++|+|+++.|+. .+.++.|.+||+. ++.. ...+....+..+......+++.++|++.++....
T Consensus 141 ~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~-~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 141 VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI-SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE-EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT
T ss_pred EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc-cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC
Confidence 3333334455789999999987755 4567889999974 4432 1112222222334567889999999877777778
Q ss_pred CcEEEEEccCCceeeEeeccCCCEEEEEEe-eCCCEEEEEEC
Q psy4869 1194 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFV-PKTHYFFTTSK 1234 (2435)
Q Consensus 1194 g~V~iwd~~t~~~~~~~~~h~~~V~~i~~s-pd~~~lvsgs~ 1234 (2435)
+.|..||.++++.+..+..+...+++++|. |+++.|++++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 889999999999888888777889999998 78877776664
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-08 Score=135.65 Aligned_cols=339 Identities=12% Similarity=0.034 Sum_probs=203.5
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCCcC----------E-EEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE
Q psy4869 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP----------V-LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120 (2435)
Q Consensus 1052 g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~----------V-~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l 1120 (2435)
+..|++++.++.|..+|..+++.+-.+..+... + ..+.+ ++..|+.++.|+.|..+|.++|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 667778877899999999999988887533210 0 11122 3567888999999999999999998887
Q ss_pred ecc--CCCEEEEEEcc---CCCEEEEEe------CCCcEEEEeCCCcceeEEEEEEEeec--------------------
Q psy4869 1121 LAH--EDSVTGVTFVP---KTHYFFTTS------KDGRVKQWDADNFERIVTLHFFISLY-------------------- 1169 (2435)
Q Consensus 1121 ~~h--~~~V~~v~fsp---~~~~l~s~s------~Dg~V~iwD~~~~~~~~~~~~~~~~~-------------------- 1169 (2435)
... ......+...| ++ .++++. .++.|+.||..+++.+..+.......
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 642 11111111122 44 444443 36899999999999888765210000
Q ss_pred -----ccccCeEEEEEeCCCCEEEEEeCCCc-------------------EEEEEccCCceeeEeec--cC-------CC
Q psy4869 1170 -----GHKLPVLSLDMSYDSTLIATGSGDRT-------------------VKVWGLDYGDCHKSLLA--HE-------DS 1216 (2435)
Q Consensus 1170 -----~h~~~V~~l~~s~dg~~l~sgs~Dg~-------------------V~iwd~~t~~~~~~~~~--h~-------~~ 1216 (2435)
........++++++..+++.+..++. |..||.++|+.+..++. |. .+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 00011125788888899999987763 99999999998877764 22 12
Q ss_pred EEEEEEeeCCC---EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccc
Q psy4869 1217 VTGVTFVPKTH---YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEET 1293 (2435)
Q Consensus 1217 V~~i~~spd~~---~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~ 1293 (2435)
+.-.....+++ .++.++.+|.++++|.++++.+....+....+.. + .+..............
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~-------~--------~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK-------G--------MDMKTGRPILDEENAA 371 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE-------E--------EETTTTEEEECHHHHC
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc-------c--------cCccCCCcccchhhcc
Confidence 22222223554 7888999999999999999988766554321100 0 0000000000000000
Q ss_pred cccccccceeeeeeccccccc-ccEEEEEecCCcceeEEee---------------------------------------
Q psy4869 1294 KDVSRSHKVLSLLHTRTLKLE-EQVLCARVSPDSKLLAVSL--------------------------------------- 1333 (2435)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~~~-~~i~~ia~spdg~~lavgs--------------------------------------- 1333 (2435)
. .. ..... ........ .....++++|+...+.+..
T Consensus 372 ~-~~-~~~~~---~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~ 446 (689)
T 1yiq_A 372 Y-WK-NGKRN---LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGL 446 (689)
T ss_dssp T-TT-SSSCE---EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHH
T ss_pred c-cC-CCCee---EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccC
Confidence 0 00 00000 00000000 0011234444444444331
Q ss_pred ------cCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeccccc-ceEEEEE
Q psy4869 1334 ------LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTGVTF 1406 (2435)
Q Consensus 1334 ------~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~-~V~~laf 1406 (2435)
.+|.|+.||+.+++.+..+..+.. +..-.+...+.+|+.|+.|+.|+.||.++|+++..++.... ...-+.|
T Consensus 447 ~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty 525 (689)
T 1yiq_A 447 LEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTY 525 (689)
T ss_dssp HHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEE
Confidence 148899999999999888775542 33335667888999999999999999999999987764422 2244667
Q ss_pred eeCCCEEE
Q psy4869 1407 VPKTHYFF 1414 (2435)
Q Consensus 1407 ~P~~~~la 1414 (2435)
..+|..++
T Consensus 526 ~~~G~qyv 533 (689)
T 1yiq_A 526 SVDGEQYV 533 (689)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 78885444
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.1e-08 Score=132.53 Aligned_cols=337 Identities=12% Similarity=0.013 Sum_probs=211.2
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCCc-----------CEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE
Q psy4869 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL-----------PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120 (2435)
Q Consensus 1052 g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~-----------~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l 1120 (2435)
+..|++++.++.|..+|..+++.+-.+..... ....+++ ++..|+.++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 56677777789999999999998887754321 0112232 4567888999999999999999999888
Q ss_pred ecc-C----CCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCcceeEEEEEEEeec--------------------
Q psy4869 1121 LAH-E----DSVTGVTFVPKTHYFFTTSK------DGRVKQWDADNFERIVTLHFFISLY-------------------- 1169 (2435)
Q Consensus 1121 ~~h-~----~~V~~v~fsp~~~~l~s~s~------Dg~V~iwD~~~~~~~~~~~~~~~~~-------------------- 1169 (2435)
..+ . ..+...-.. .+..+++++. ++.|+.||..+++.+..+.......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 754 1 111111111 2345555543 6899999999999888775211100
Q ss_pred ------ccccCeEEEEEeCCCCEEEEEeCCC-------------------cEEEEEccCCceeeEeec--cC-------C
Q psy4869 1170 ------GHKLPVLSLDMSYDSTLIATGSGDR-------------------TVKVWGLDYGDCHKSLLA--HE-------D 1215 (2435)
Q Consensus 1170 ------~h~~~V~~l~~s~dg~~l~sgs~Dg-------------------~V~iwd~~t~~~~~~~~~--h~-------~ 1215 (2435)
........+++++++..++.+..++ .|..+|.++|+.+..++. |. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 0011113578888899999887664 499999999998877653 21 1
Q ss_pred CEEEEEEeeCC---CEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccccccc
Q psy4869 1216 SVTGVTFVPKT---HYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEE 1292 (2435)
Q Consensus 1216 ~V~~i~~spd~---~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~ 1292 (2435)
...-+....++ ..++.++.+|.|.++|.++++.+..+.+....+. . -+| ............
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~-------~--------~~d-~~g~~~~~~~~~ 377 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA-------S--------GYD-KHGKPIGIAAAR 377 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE-------E--------EEC-TTSCEEECGGGG
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc-------c--------ccC-CCCceeeccccC
Confidence 12222333466 6788999999999999999998887765432110 0 011 000000000000
Q ss_pred ccccccccceeeeeecccccccccEEEEEecCCcceeEEeec--------------------------------------
Q psy4869 1293 TKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL-------------------------------------- 1334 (2435)
Q Consensus 1293 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~-------------------------------------- 1334 (2435)
. ........ ..... ......++++|++..+.+...
T Consensus 378 ~-----~~~~~~~~-P~~~G-~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 450 (677)
T 1kb0_A 378 D-----GSKPQDAV-PGPYG-AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEP 450 (677)
T ss_dssp C-----TTSCEECS-SCTTC-SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSC
T ss_pred c-----CCCccEEC-cCccc-ccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccccccc
Confidence 0 00000000 00000 011124677777777666543
Q ss_pred -----CCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeccc-ccceEEEEEee
Q psy4869 1335 -----DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH-EDSVTGVTFVP 1408 (2435)
Q Consensus 1335 -----dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h-~~~V~~laf~P 1408 (2435)
.|.|..||+.+++.+..+... .++....+..++.+++.|+.||.+++||..+|+++..+... .....-+.|.+
T Consensus 451 ~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~ 529 (677)
T 1kb0_A 451 PKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMV 529 (677)
T ss_dssp CCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEe
Confidence 278999999999988877633 34445556778889999999999999999999999887633 23334556678
Q ss_pred CCCEEEE
Q psy4869 1409 KTHYFFT 1415 (2435)
Q Consensus 1409 ~~~~laS 1415 (2435)
++..++.
T Consensus 530 ~G~~~v~ 536 (677)
T 1kb0_A 530 DGRQYVS 536 (677)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 8865554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-08 Score=121.01 Aligned_cols=232 Identities=9% Similarity=0.089 Sum_probs=158.2
Q ss_pred eCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC
Q psy4869 402 SGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK 480 (2435)
Q Consensus 402 ~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~ 480 (2435)
...........|+++++ ++++...++.|..|+. +++ ...+..+...++.+.+.+++. ++++...++.|.+||.. +
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECCC-C
Confidence 33445677899999998 5566667889999998 454 345555666778888888875 55555556789999986 4
Q ss_pred cceEeec-----CcccEEEEEECCCCCEEEE----Eec-------------CCeEEEEECCCCcEEEEEecCCCCEEEEE
Q psy4869 481 NQAVSMN-----NTYQVTSVAFNDTAECVLT----GGI-------------DNDIKMWDLRTNSVVQKLRGHSDTVTGLS 538 (2435)
Q Consensus 481 ~~~~~~~-----~~~~v~sv~~sp~g~~l~s----gs~-------------dg~V~lwD~~s~~~v~~l~~h~~~V~~i~ 538 (2435)
+...... ....++.++++++|++.++ |.. .+.|+.||..+++..... +....+.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~ 194 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLA 194 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceE
Confidence 4322221 1234678999999998876 332 357888998777654433 345678999
Q ss_pred EcCCCCEEEEEECC------CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 539 LSPDGSYILSNAMD------NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 539 ~spdg~~las~s~D------g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
|+||++.|+.+..+ +.|.+||+.... ......+... .......+++.++|++.+ +..+ .|.+||. .
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~---~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~ 266 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASV---PDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-D 266 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECC---SSSCCCSEEECTTSCEEE-CCSS-EEEEECT-T
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEEC---CCCCCCeEEECCCCCEEE-ecCC-cEEEECC-C
Confidence 99999988877665 789999986321 0011111111 012234578999999544 4444 4999998 5
Q ss_pred CcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEE
Q psy4869 613 RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIY 648 (2435)
Q Consensus 613 ~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~ 648 (2435)
++.+..+..+. .+..++|.++++.|+.++.++..+
T Consensus 267 g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 267 GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 77777776555 589999999999888888765444
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.3e-08 Score=134.91 Aligned_cols=319 Identities=15% Similarity=0.135 Sum_probs=198.9
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCCe------------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSY------------ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI 963 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~------------v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~ 963 (2435)
+++.++.+.++.|.-+|..+++.+..++.... ...+++ ++..|++++.|+.|+.+|.++|+++..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 55555555568899999999999988864321 112222 4678889999999999999999988766
Q ss_pred ccc--ccceeEEEEecCCCCCCCcCCcceEEEEEe------CCCeEEEEEcccccccccccccccccc--cccceeee-e
Q psy4869 964 PAH--SQELWSVAMLPDQFNPNVYLPLQIQVVTGG------GDKSVKLWQLELVSVNREADEETKDVS--RSHKVLSL-L 1032 (2435)
Q Consensus 964 ~~h--~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs------~Dg~V~lW~l~~~~~~~~~~~~~~~~~--~~~~~l~~-~ 1032 (2435)
... ......+...|- -.+..++.+. .+|.|+.||...++..+.......... .....+.. .
T Consensus 148 ~~~~~~~~~~~~~~sP~--------v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~ 219 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPR--------VVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAA 219 (689)
T ss_dssp ECCSCTTSCCBCCSCCE--------EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHH
T ss_pred cCcCCCCCCccccCCcE--------EECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccc
Confidence 432 111111111110 0012455543 368999999987776554221000000 00000000 0
Q ss_pred ecc---cc----ccCCCEEEEEEcCCCCEEEEEECCCc-------------------EEEEEcCCCeEEEEEec--CC--
Q psy4869 1033 HTR---TL----KLEEQVLCARVSPDSKLLAVSLLDTT-------------------VKIFFLDTFKFFISLYG--HK-- 1082 (2435)
Q Consensus 1033 ~~~---~~----~~~~~v~~l~~spdg~~Lavg~~dg~-------------------V~i~d~~~~~~~~~l~~--h~-- 1082 (2435)
... .. ........++++|++.+|+++..++. |..+|.++++.+..++. |.
T Consensus 220 ~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w 299 (689)
T 1yiq_A 220 KTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW 299 (689)
T ss_dssp TTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS
T ss_pred cccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc
Confidence 000 00 00111235789999999999987753 99999999999888764 21
Q ss_pred -----cCEEEEEEcCCCC---EEEEEECCCcEEEEEccCCceeEEEeccC-C----------------------------
Q psy4869 1083 -----LPVLSLDMSYDST---LIATGSGDRTVKVWGLDYGDCHKSLLAHE-D---------------------------- 1125 (2435)
Q Consensus 1083 -----~~V~sl~~spdg~---~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~-~---------------------------- 1125 (2435)
.++.-.....+|+ .++.++.+|.++++|.++|+.+....... .
T Consensus 300 d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~ 379 (689)
T 1yiq_A 300 DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRN 379 (689)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCE
T ss_pred cccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCee
Confidence 2222223333564 78889999999999999999875443111 0
Q ss_pred ----------CEEEEEEccCCCEEEEEeC---------------------------------------------CCcEEE
Q psy4869 1126 ----------SVTGVTFVPKTHYFFTTSK---------------------------------------------DGRVKQ 1150 (2435)
Q Consensus 1126 ----------~V~~v~fsp~~~~l~s~s~---------------------------------------------Dg~V~i 1150 (2435)
....++|+|+..++++... +|.|+.
T Consensus 380 ~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A 459 (689)
T 1yiq_A 380 LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIA 459 (689)
T ss_dssp EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEE
T ss_pred EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEE
Confidence 0112688888777776532 377999
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCC-EEEEEEeeCCCEE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS-VTGVTFVPKTHYF 1229 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~-V~~i~~spd~~~l 1229 (2435)
||+.+++.+.... +..++..-.+...+.+++.|+.||.|+.||.++|+.+..+....+. ..-+.|..++++.
T Consensus 460 ~D~~tG~~~W~~~-------~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 460 WDPVKQQAAWEVP-------YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EETTTTEEEEEEE-------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred EECCCCCeEeEcc-------CCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 9999998877764 1222333344556789999999999999999999999888754332 2346666777655
Q ss_pred EE
Q psy4869 1230 FT 1231 (2435)
Q Consensus 1230 vs 1231 (2435)
++
T Consensus 533 v~ 534 (689)
T 1yiq_A 533 VT 534 (689)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-08 Score=128.14 Aligned_cols=267 Identities=11% Similarity=0.043 Sum_probs=174.6
Q ss_pred CcEEEEEECCCCCEEEEEe--CCCeEEEEecCCceeeEEEe-------eCCCCCeeEEEEccCCCEEEEEeC-----CCe
Q psy4869 363 GEIFCSKYHPDGQYIASSG--YDRQIFIWSVYGECENIGVM-------SGHTGAVMDLKFSTDGCHIFTCST-----DQT 428 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs--~Dg~I~iwd~~~~~~~~~~l-------~~h~~~V~~l~~s~dg~~L~s~s~-----Dg~ 428 (2435)
.....++++|+|+++++.. .++.++||.+..+. +..+ ..|...+..++++++++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 6788999999999998864 23435566554221 1211 235678999999999865554333 578
Q ss_pred EEEEECCCCceEEEEecc------CccccccCcccCCCeEEEEEe---CCCeEEEEeCCCCcceEeecCc-c-cEEEEEE
Q psy4869 429 LAVWDLEKGQRIKKMKGH------STFVNSCDPVRRGQLLIASGS---DDCTVKVWDPRKKNQAVSMNNT-Y-QVTSVAF 497 (2435)
Q Consensus 429 I~vwd~~tg~~v~~l~~h------~~~v~sv~~~~~~~~llasgs---~Dg~I~vwD~~~~~~~~~~~~~-~-~v~sv~~ 497 (2435)
|.+||+.+++.+..+..+ ...++.+++.+++..++++.. .++.|.+||+.+++....+... . ......+
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999999999877777532 234577788776667777766 7889999999877655544221 1 0001334
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCC-cEEEEEcCCCCC---CC-c---e
Q psy4869 498 NDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN-TVRIWDIRPYVP---GE-R---C 569 (2435)
Q Consensus 498 sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg-~I~lWdl~~~~~---~~-~---~ 569 (2435)
.++|..+.+.+.+|.+..|. ..+..|+|+|||+.|+.+..++ .+..++...... .. + .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 45677777777777765553 2468899999999999888766 444444321000 00 0 0
Q ss_pred EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC-CCCCeeEEEEcCCCCEEEEEECCCcEE
Q psy4869 570 VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG-HNGSVNDVQFHPKEPIIMSASSDKTIY 648 (2435)
Q Consensus 570 v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~-h~~~V~~l~fspd~~~Lasgs~Dg~I~ 648 (2435)
+... ++. .....++++++|+++++...++.|.+||.++++....... +...+.+++|.+++.++++.+..+.+.
T Consensus 241 ~~~~-g~~----g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 241 IERY-SEK----PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp CEEE-EEC----CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred eEec-ccC----CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 0111 111 1234589999999999999999999999966765433322 345689999999988888777555544
Q ss_pred Ee
Q psy4869 649 LG 650 (2435)
Q Consensus 649 vW 650 (2435)
+|
T Consensus 316 ~f 317 (343)
T 2qe8_A 316 PL 317 (343)
T ss_dssp GG
T ss_pred cc
Confidence 33
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-08 Score=124.41 Aligned_cols=290 Identities=7% Similarity=-0.116 Sum_probs=189.5
Q ss_pred CCCEEEEEECC-C----cEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEEccCCc
Q psy4869 1051 DSKLLAVSLLD-T----TVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDRTVKVWGLDYGD 1115 (2435)
Q Consensus 1051 dg~~Lavg~~d-g----~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs----------~Dg~I~vWd~~t~~ 1115 (2435)
+...+++.... + .|.++|.++++.+.++.....+ .+.++||+++++++. .++.|.+||..+++
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 33455555543 3 7889999999999999866667 799999999988886 37889999999999
Q ss_pred eeEEEecc-------CCCEEEEEEccCCCEEEEEeC--CCcEEE--EeCCCcceeEEEEEEEeecccccCeEEEEEeCCC
Q psy4869 1116 CHKSLLAH-------EDSVTGVTFVPKTHYFFTTSK--DGRVKQ--WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS 1184 (2435)
Q Consensus 1116 ~~~~l~~h-------~~~V~~v~fsp~~~~l~s~s~--Dg~V~i--wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 1184 (2435)
.+.++... ......++|+||+++++++.. +..|.+ +|..+ ...+. . . .. +.+.|++
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~----v-~--~~---~~~~p~g 174 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTK----S-A--SC---FHIHPGA 174 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEE----C-S--SC---CCCEEEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEE----C-C--Cc---eEEccCC
Confidence 99998643 123568999999999998875 457888 88876 23322 1 1 11 1122333
Q ss_pred -CEEEEEeCCCcEEEEEccC-----Cceee----EeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEee
Q psy4869 1185 -TLIATGSGDRTVKVWGLDY-----GDCHK----SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF 1254 (2435)
Q Consensus 1185 -~~l~sgs~Dg~V~iwd~~t-----~~~~~----~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~ 1254 (2435)
..+++.+.||.+.+.|+++ ++... .+.....+. . .+++..++..+. +.+.+.|+......
T Consensus 175 ~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~----- 244 (368)
T 1mda_H 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT----- 244 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE-----
T ss_pred CeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce-----
Confidence 3445566788888888886 44321 121223343 2 555666665556 77877777532110
Q ss_pred CCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec
Q psy4869 1255 NPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL 1334 (2435)
Q Consensus 1255 ~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~ 1334 (2435)
.+..|.+..... ... .........++++||++.+.++..
T Consensus 245 -------------------v~~~~~~~~~~~-------------~~~---------~~~p~g~~~v~~s~dg~~lyV~~~ 283 (368)
T 1mda_H 245 -------------------MKAAIDGNESGR-------------KAD---------NFRSAGFQMVAKLKNTDGIMILTV 283 (368)
T ss_dssp -------------------EECCCCSSCTHH-------------HHT---------TEEECSSSCEEEETTTTEEEEEEE
T ss_pred -------------------EEEEEEeccccc-------------ccc---------ccccCcceeeEEcCCCCEEEEEec
Confidence 011121110000 000 000111122579999998887654
Q ss_pred -C--------CeEEEEEcccceEEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCceEEEecccccceEE
Q psy4869 1335 -D--------TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST-LIATGS-GDRTVKVWGLDYGDCHKSLLAHEDSVTG 1403 (2435)
Q Consensus 1335 -d--------G~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~-~L~sGg-~Dg~V~iwdl~~gk~~~~~~~h~~~V~~ 1403 (2435)
+ +.+.++|..+++.+..+.... ....|+|+|||+ ++++.. .++.|.++|+.+++.++.++.... ...
T Consensus 284 ~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~ 361 (368)
T 1mda_H 284 EHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PES 361 (368)
T ss_dssp ECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCE
T ss_pred cccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCE
Confidence 2 467799999999988887544 578899999998 566666 599999999999999998875544 345
Q ss_pred EEEee
Q psy4869 1404 VTFVP 1408 (2435)
Q Consensus 1404 laf~P 1408 (2435)
|++++
T Consensus 362 i~~~~ 366 (368)
T 1mda_H 362 LSVQN 366 (368)
T ss_dssp EECCC
T ss_pred EEeec
Confidence 55543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-07 Score=115.33 Aligned_cols=230 Identities=11% Similarity=0.085 Sum_probs=156.0
Q ss_pred ecccCCcEEEEEECCCCC-EEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy4869 358 LEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK 436 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t 436 (2435)
+..+........|+|+|+ +++++..++.|..|+..+. ...+..+...+..++++++|+++++...++.|.+||.+
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 334455667889999998 6677778899999987543 23344566789999999999866665566889999986
Q ss_pred CceEEEEecc----CccccccCcccCCCeEEEE----EeC-------------CCeEEEEeCCCCcceEeecCcccEEEE
Q psy4869 437 GQRIKKMKGH----STFVNSCDPVRRGQLLIAS----GSD-------------DCTVKVWDPRKKNQAVSMNNTYQVTSV 495 (2435)
Q Consensus 437 g~~v~~l~~h----~~~v~sv~~~~~~~~llas----gs~-------------Dg~I~vwD~~~~~~~~~~~~~~~v~sv 495 (2435)
++........ ...++++.+.+++..+ ++ |.. .+.|..||..+++..... .....+.+
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~-~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl 193 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIW-FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL 193 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSCEE-EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCCEE-EeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce
Confidence 6533222111 1346778888888544 43 321 356888887666654433 44567889
Q ss_pred EECCCCCEEEEEecC------CeEEEEECCCCcEE--EEE-ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 496 AFNDTAECVLTGGID------NDIKMWDLRTNSVV--QKL-RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~d------g~V~lwD~~s~~~v--~~l-~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
+|+|+++.|+++... +.|++||+..+... ..+ ....+...+++++++|++.+ +..++ |.+||..
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~g-v~~~~~~----- 266 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTG-VCVFDSD----- 266 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSE-EEEECTT-----
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCc-EEEECCC-----
Confidence 999999988888765 78999998765421 111 12234456789999999544 44554 8899874
Q ss_pred CceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeE
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCV 605 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V 605 (2435)
++.+..+.... .+..++|+++++.|+.++.++..
T Consensus 267 g~~~~~~~~~~-----~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 267 GQLLGHIPTPG-----TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp SCEEEEEECSS-----CCCEEEECTTSCEEEEEETTEEE
T ss_pred CCEEEEEECCC-----ceeEEEEeCCCCEEEEEcCCeEE
Confidence 45555554332 46789999999988888776533
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=9.3e-07 Score=110.50 Aligned_cols=226 Identities=13% Similarity=0.061 Sum_probs=153.1
Q ss_pred CeeEEEEccCCCE-EEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe
Q psy4869 407 AVMDLKFSTDGCH-IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS 485 (2435)
Q Consensus 407 ~V~~l~~s~dg~~-L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~ 485 (2435)
......|++++.. +++...++.|..||..+++.. .+. ....+.++.+.+++..+++ .. ..|.+||..+++....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~--~~-~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA--SD-DGLFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE--ET-TEEEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE--EC-CCEEEEECCCCcEEEE
Confidence 3456789997554 555556789999999877543 333 2356778888888754443 33 4499999987765433
Q ss_pred ecC-----cccEEEEEECCCCCEEEEEec------CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEE-ECCC
Q psy4869 486 MNN-----TYQVTSVAFNDTAECVLTGGI------DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSN-AMDN 553 (2435)
Q Consensus 486 ~~~-----~~~v~sv~~sp~g~~l~sgs~------dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~-s~Dg 553 (2435)
... ...++.++++|+|+++++... .+.|+.+| +++.. .+..+......++|+|||+.|+.+ +.++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 221 246899999999997665432 35677777 45433 333334467899999999977655 4578
Q ss_pred cEEEEEcC--CC-CCCC-ceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEE
Q psy4869 554 TVRIWDIR--PY-VPGE-RCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDV 629 (2435)
Q Consensus 554 ~I~lWdl~--~~-~~~~-~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l 629 (2435)
.|.+||+. .. .... +....+... ......+++.++|+++++...++.|.+||. +++.+..+..+...++++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~----~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGI----KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTS----SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCC----CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 99999985 21 1111 122222111 124567899999998887777789999998 678878787777789999
Q ss_pred EEc-CCCCEEEEEECCC
Q psy4869 630 QFH-PKEPIIMSASSDK 645 (2435)
Q Consensus 630 ~fs-pd~~~Lasgs~Dg 645 (2435)
+|. ++++.|+.++..+
T Consensus 277 af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 277 AFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEESTTSCEEEEEEBCT
T ss_pred EEecCCCCEEEEEecCC
Confidence 998 8888776655443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=9.5e-07 Score=110.39 Aligned_cols=222 Identities=13% Similarity=0.018 Sum_probs=148.9
Q ss_pred cEEEEEECCCC-CEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q psy4869 364 EIFCSKYHPDG-QYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK 442 (2435)
Q Consensus 364 ~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~ 442 (2435)
-.....|+|++ .+++++..++.|.+||..++.... +. +...+.+++|+++|+++++. .+ .|.+||..+++....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 34677899975 456666678999999987654322 22 34689999999998766654 44 599999988875433
Q ss_pred Eec----cCccccccCcccCCCeEEEEEeC-----CCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe-cCCe
Q psy4869 443 MKG----HSTFVNSCDPVRRGQLLIASGSD-----DCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG-IDND 512 (2435)
Q Consensus 443 l~~----h~~~v~sv~~~~~~~~llasgs~-----Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~ 512 (2435)
... ....++++.+.+++..++.+... .+.|..+| .++...........+.++|+|+|+.++.+. .++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 221 12356788888988755544332 24566666 343332223334578999999999876654 5689
Q ss_pred EEEEECC--CC-c-----EEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCe
Q psy4869 513 IKMWDLR--TN-S-----VVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL 584 (2435)
Q Consensus 513 V~lwD~~--s~-~-----~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i 584 (2435)
|.+||+. ++ + .+..+..+.....+++++++|++.++...++.|.+||.. ++.+..+..+. ..+
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-----g~~~~~i~~~~----~~~ 273 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-----GNHIARYEVPG----KQT 273 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-----CCEEEEEECSC----SBE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-----CCEEEEEECCC----CCc
Confidence 9999986 55 3 233333345667899999999988777778899999874 34445554332 357
Q ss_pred EEEEEc-CCCCEEEEecC
Q psy4869 585 LRCAWS-VSGLYVTAGSA 601 (2435)
Q Consensus 585 ~~v~~s-pdg~~Lasgs~ 601 (2435)
.+++|+ ++++.|+.++.
T Consensus 274 ~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 274 TCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEESTTSCEEEEEEB
T ss_pred EEEEEecCCCCEEEEEec
Confidence 899998 88877765543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6.2e-08 Score=134.35 Aligned_cols=243 Identities=12% Similarity=0.094 Sum_probs=161.9
Q ss_pred cccCCcEEEEEECCCCCEEEEE-----eCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC------
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASS-----GYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ------ 427 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasg-----s~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg------ 427 (2435)
.+|...+..++|+|||++||-+ +....|++||+.++......+.. .....++|+ ||+.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccc
Confidence 4566788899999999998843 33357999999876432222221 113568999 999999988774
Q ss_pred -------eEEEEECCCCc----eEEEEec-cCccccccCcccCCCeEEEEEeCC---CeEEEEeCCCCc--ceEeecCcc
Q psy4869 428 -------TLAVWDLEKGQ----RIKKMKG-HSTFVNSCDPVRRGQLLIASGSDD---CTVKVWDPRKKN--QAVSMNNTY 490 (2435)
Q Consensus 428 -------~I~vwd~~tg~----~v~~l~~-h~~~v~sv~~~~~~~~llasgs~D---g~I~vwD~~~~~--~~~~~~~~~ 490 (2435)
.|++|++.++. .+..... |......+.+++++..++++.+.+ ..|.++|+..+. ......+..
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 39999998764 2333333 445566788999998887776543 589999997763 232223333
Q ss_pred cEEEEEECCCCCEEEEEe-c---CCeEEEEECCCCcE--EEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEEcC
Q psy4869 491 QVTSVAFNDTAECVLTGG-I---DNDIKMWDLRTNSV--VQKLRGHSDTVTGLSLSPDGSYILSNAM-DN--TVRIWDIR 561 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs-~---dg~V~lwD~~s~~~--v~~l~~h~~~V~~i~~spdg~~las~s~-Dg--~I~lWdl~ 561 (2435)
..... ++++|..|+..+ . .+.|..+|+.++.. ...+..|...+. .|++++++|+.... |+ .|++||+.
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 34443 666666665444 3 36899999988654 345666766665 89999998887665 44 68888876
Q ss_pred CCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC----CeEEEEECCCCcE
Q psy4869 562 PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD----KCVYIWDTTTRRI 615 (2435)
Q Consensus 562 ~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D----g~V~iwd~~s~~~ 615 (2435)
. .....+.... ...+..+.++++++.|+....+ +.|+.||+.+++.
T Consensus 359 g-----~~~~~l~~p~---~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 G-----KRVREVALPG---LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp S-----CEEEEECCSS---SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred C-----CeeEEeecCC---CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 2 2233332111 1245667778888776655443 7899999988764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=119.24 Aligned_cols=257 Identities=8% Similarity=-0.073 Sum_probs=175.8
Q ss_pred cEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe----------CCCcEEEEEccCCceeeEeeccC--
Q psy4869 1147 RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDRTVKVWGLDYGDCHKSLLAHE-- 1214 (2435)
Q Consensus 1147 ~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs----------~Dg~V~iwd~~t~~~~~~~~~h~-- 1214 (2435)
.|.++|..+++.+..+. ....+ .+.++||+++++++. .++.|.+||+.+++.+..+..+.
T Consensus 47 ~vsvID~~t~~v~~~i~------vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~ 118 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSL------GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118 (368)
T ss_dssp EEEEEETTTTEEEEEEE------ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred eEEEEECCCCeEEEEEe------CCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc
Confidence 88899999998887765 22334 799999999999886 36889999999999998886431
Q ss_pred -----CCEEEEEEeeCCCEEEEEEC--CCcEEE--EECCCCceEEEEeeCCc-ccccC-ceEEEEEECCCeEEEEEccc-
Q psy4869 1215 -----DSVTGVTFVPKTHYFFTTSK--DGRVKQ--WDADNFERIVTLHFNPN-VYLPL-QIQVVTGGGDKSVKLWQLEL- 1282 (2435)
Q Consensus 1215 -----~~V~~i~~spd~~~lvsgs~--Dg~I~v--wD~~~~~~v~~~~~~~~-~~~~~-~~~lv~g~~d~~v~iwdl~~- 1282 (2435)
..-..+.++||+++++++.. +..+.+ +|..+ +..+..... ...+. ...+++.+.|+.+.+.++..
T Consensus 119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~ 195 (368)
T 1mda_H 119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccc
Confidence 23568999999999999885 456888 89877 455544322 11122 22345556788888888763
Q ss_pred ----ccccccccccccccccccceeeeeecccccc-cccEEEEEecCCcceeEEeecCCeEEEEEcccc--eEEEEecCC
Q psy4869 1283 ----VSVNREADEETKDVSRSHKVLSLLHTRTLKL-EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF--KFFISLYGH 1355 (2435)
Q Consensus 1283 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~--k~i~~~~~h 1355 (2435)
.+...... . .... ..+. . ++++..++..+. |.|.+.|.... +.+..+...
T Consensus 196 ~~~~~~v~~~~t-------------~-----~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~ 252 (368)
T 1mda_H 196 PAAAGIVGAQCT-------------G-----AQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN 252 (368)
T ss_dssp CCCCEECCCCSC-------------T-----TSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred cccCCeEEEEee-------------e-----eeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence 11100000 0 0000 1111 2 566666666666 99999998653 233322211
Q ss_pred ----------CCCeEEEEEecCCCEEEEEeC---------CCcEEEEeCCCCceEEEecccccceEEEEEeeCCC-EEEE
Q psy4869 1356 ----------KLPVLSLDMSYDSTLIATGSG---------DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH-YFFT 1415 (2435)
Q Consensus 1356 ----------~~~V~~la~spdg~~L~sGg~---------Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~-~laS 1415 (2435)
......++++||++.++.+.. ++.+.++|+.+++.++.+.... ...+|+|+|++. +|++
T Consensus 253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYA 331 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEE
T ss_pred cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEE
Confidence 111222689999998887543 2356699999999998876543 588999999996 6777
Q ss_pred Ee-CCCcEEEEECCCceeEEEEee
Q psy4869 1416 TS-KDGRVKQWDADNFERIVTLHI 1438 (2435)
Q Consensus 1416 gg-~Dg~V~lWd~~~~~~l~~~~~ 1438 (2435)
.. .++.|.++|..+.+.+++++.
T Consensus 332 ~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EETTTTEEEEEESSSCEEEEECCC
T ss_pred ccCCCCeEEEEECCCCcEEEEEEC
Confidence 77 699999999999999998863
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.4e-08 Score=123.36 Aligned_cols=301 Identities=14% Similarity=0.043 Sum_probs=187.9
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCC
Q psy4869 1047 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1126 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~ 1126 (2435)
.+..+|. |.+++.++.|..|| .+++.+..+..+...+.++...+++. |+.++.+ |..+|. +++.+..+......
T Consensus 26 ~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 26 ILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAI 99 (330)
T ss_dssp EECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred eEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCc
Confidence 4445554 55666788899999 88877665554545567777776765 4445544 888886 56544333322222
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce
Q psy4869 1127 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1206 (2435)
Q Consensus 1127 V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~ 1206 (2435)
.....+. +..+++++.++.|..+|.. ++...... .....+.++...+++. ++.++.++.|..+|.. ++.
T Consensus 100 ~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~------~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~ 168 (330)
T 3hxj_A 100 VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK------TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE 168 (330)
T ss_dssp -CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE------CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCE
T ss_pred ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc------CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE
Confidence 2223333 5567888889999999988 65544432 2333455566666665 6667788999999999 887
Q ss_pred eeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccc
Q psy4869 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVN 1286 (2435)
Q Consensus 1207 ~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~ 1286 (2435)
+..+......+.++...+++..++. + +.|..+| .+.+........
T Consensus 169 ~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~------------------------------- 213 (330)
T 3hxj_A 169 KWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAG------------------------------- 213 (330)
T ss_dssp EEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCS-------------------------------
T ss_pred eEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccC-------------------------------
Confidence 7666655556667777666764443 3 7777777 443332211100
Q ss_pred ccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEec
Q psy4869 1287 READEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY 1366 (2435)
Q Consensus 1287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~sp 1366 (2435)
...+.++...++| .+.+++.++.+..++. +++.+..+......+..+.+.+
T Consensus 214 ---------------------------~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 264 (330)
T 3hxj_A 214 ---------------------------YWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN 264 (330)
T ss_dssp ---------------------------SCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT
T ss_pred ---------------------------CcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC
Confidence 0123445556666 4556777788888874 5555555554444344455555
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCce
Q psy4869 1367 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1367 dg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
++ .|..|+.+|.|..+|. +++.+.........+.++..++++.+++ ++.+|.+++...+..+
T Consensus 265 ~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 265 TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLEHH 326 (330)
T ss_dssp TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC----
T ss_pred CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEeccccc
Confidence 55 5667788888999996 6777666655556678888888876555 8889999988877544
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-07 Score=118.93 Aligned_cols=300 Identities=11% Similarity=0.019 Sum_probs=191.4
Q ss_pred EEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCC-eEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccc
Q psy4869 891 LAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGS-YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQE 969 (2435)
Q Consensus 891 la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~-~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~ 969 (2435)
.++..+|...+.+.++.|..|| .+++.+.....+. .+.++.+.++++ |.+|+.+ |..+|. +|+.+..+..+...
T Consensus 25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAI 99 (330)
T ss_dssp CEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred ceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCc
Confidence 4555566655544577899999 8887766555333 335556555554 5666555 888886 77776665544333
Q ss_pred eeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEc
Q psy4869 970 LWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1049 (2435)
Q Consensus 970 V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 1049 (2435)
....... ++ .+..++.++.|..++.+ +....... .....+.++...
T Consensus 100 ~~~~~~~-~~-----------~l~v~t~~~~l~~~d~~-g~~~~~~~---------------------~~~~~~~~~~~~ 145 (330)
T 3hxj_A 100 VSDFTIF-ED-----------ILYVTSMDGHLYAINTD-GTEKWRFK---------------------TKKAIYATPIVS 145 (330)
T ss_dssp -CCEEEE-TT-----------EEEEECTTSEEEEECTT-SCEEEEEE---------------------CSSCCCSCCEEC
T ss_pred ccCceEE-CC-----------EEEEEecCCEEEEEcCC-CCEEEEEc---------------------CCCceeeeeEEc
Confidence 3333333 32 67778888989888865 32211100 011223445666
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEE
Q psy4869 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1129 (2435)
Q Consensus 1050 pdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~ 1129 (2435)
++|. |.+++.++.|..|+.. ++.+..+......+.++.+.+++.+++ ++ +.|..+| .+++.+.........+.+
T Consensus 146 ~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~ 219 (330)
T 3hxj_A 146 EDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTR 219 (330)
T ss_dssp TTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSC
T ss_pred CCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceec
Confidence 6776 5567777999999998 777777765556677778877777555 44 8899999 788877777666666788
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeE
Q psy4869 1130 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1209 (2435)
Q Consensus 1130 v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~ 1209 (2435)
+...+++. |+.++.++.|..+|. ++....... .....+..+.+.+++ .|++++.+|.|..+|. +++.+..
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~------~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFK------TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWN 289 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECT-TSCEEEEEE------CSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEE
T ss_pred eEECCCCe-EEEEcCCCeEEEECC-CCCEeEEee------CCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEE
Confidence 88887765 666677888888874 444443332 222223334454444 6777888889999996 6776666
Q ss_pred eeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCC
Q psy4869 1210 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1246 (2435)
Q Consensus 1210 ~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~ 1246 (2435)
+......+.++...++++ |..++.+|.+++......
T Consensus 290 ~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 290 FETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred EEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 655555667777766665 667889999988776543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-07 Score=128.19 Aligned_cols=239 Identities=15% Similarity=0.132 Sum_probs=158.9
Q ss_pred CCCCCeeEEEEccCCCEEEEEe-----CCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC--------
Q psy4869 403 GHTGAVMDLKFSTDGCHIFTCS-----TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD-------- 469 (2435)
Q Consensus 403 ~h~~~V~~l~~s~dg~~L~s~s-----~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D-------- 469 (2435)
+|...+..++|||||++|+-+. .+..|++||+++|+.+... .+......+.|+ ++..++.+...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3556788999999999888533 2357999999999865431 111113567899 887666554432
Q ss_pred ----CeEEEEeCCCCcc--eEeecC----cccEEEEEECCCCCEEEEEec----CCeEEEEECCCCc-EEEEEecCCCCE
Q psy4869 470 ----CTVKVWDPRKKNQ--AVSMNN----TYQVTSVAFNDTAECVLTGGI----DNDIKMWDLRTNS-VVQKLRGHSDTV 534 (2435)
Q Consensus 470 ----g~I~vwD~~~~~~--~~~~~~----~~~v~sv~~sp~g~~l~sgs~----dg~V~lwD~~s~~-~v~~l~~h~~~V 534 (2435)
..|++|++.++.. ...+.. ......+.|+|||++|+.... +..|+++|+.++. ....+..+.+..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 3499999887653 222222 335778999999999876543 3589999998764 455666666666
Q ss_pred EEEEEcCCCCEEEEEE-CC---CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC---eEEE
Q psy4869 535 TGLSLSPDGSYILSNA-MD---NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK---CVYI 607 (2435)
Q Consensus 535 ~~i~~spdg~~las~s-~D---g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg---~V~i 607 (2435)
... |+++|..|+..+ .| +.|.++|+.... ......+..+.. .+. .|++++++|+....++ .|++
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~--~~~~~~l~~~~~----~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG--PAHWRDLIPERQ----QVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC--GGGCEEEECCCS----SCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC--ccccEEEecCCC----CEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 555 677777666544 33 678889987421 112234444432 233 8999999888776543 7899
Q ss_pred EECCCCcEEEEec-CCCCCeeEEEEcCCCCEEEEEECC----CcEEEecCC
Q psy4869 608 WDTTTRRIAYKLP-GHNGSVNDVQFHPKEPIIMSASSD----KTIYLGESP 653 (2435)
Q Consensus 608 wd~~s~~~~~~l~-~h~~~V~~l~fspd~~~Lasgs~D----g~I~vWd~~ 653 (2435)
||+..+. ...+. .+.+.+..+.++++++.|+....+ +.|+.||+.
T Consensus 355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 9987544 44443 345668888889888866655544 789999875
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-06 Score=106.66 Aligned_cols=224 Identities=12% Similarity=0.110 Sum_probs=152.5
Q ss_pred cCCCEEEEEe-CCCeEEEEECCCC----ceEEEEec-------cCccccccCcccCCCeEEEEEeCC------CeEEEEe
Q psy4869 415 TDGCHIFTCS-TDQTLAVWDLEKG----QRIKKMKG-------HSTFVNSCDPVRRGQLLIASGSDD------CTVKVWD 476 (2435)
Q Consensus 415 ~dg~~L~s~s-~Dg~I~vwd~~tg----~~v~~l~~-------h~~~v~sv~~~~~~~~llasgs~D------g~I~vwD 476 (2435)
.++++|+..+ .++.|+++|+.+. +.++.+.. .......+...|++ +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 7788777655 5788999998755 56666630 11122334556777 55555544 7899999
Q ss_pred CCCCcceEeecCc----ccEEEEEECCCCCEEEEEe-------------------cCCeEEEEECCCCcEEEEEecC-C-
Q psy4869 477 PRKKNQAVSMNNT----YQVTSVAFNDTAECVLTGG-------------------IDNDIKMWDLRTNSVVQKLRGH-S- 531 (2435)
Q Consensus 477 ~~~~~~~~~~~~~----~~v~sv~~sp~g~~l~sgs-------------------~dg~V~lwD~~s~~~v~~l~~h-~- 531 (2435)
..+.+.+...... ..-..+.|+|+++.+++.. .+.+|.+||+.+++.+.++... .
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9999988887532 2244678899999888874 3789999999999888888642 2
Q ss_pred CCEEEEEE--cCCCCEEEEEE------CCCcEEEEEcCCCCCCCceEEEEe--Ccc--cc----------cccCeEEEEE
Q psy4869 532 DTVTGLSL--SPDGSYILSNA------MDNTVRIWDIRPYVPGERCVKVMS--GHQ--HN----------FEKNLLRCAW 589 (2435)
Q Consensus 532 ~~V~~i~~--spdg~~las~s------~Dg~I~lWdl~~~~~~~~~v~~~~--~h~--~~----------~~~~i~~v~~ 589 (2435)
.....|.| +|+|++++.++ .+++|.+|..... .....+.+. ... .. .......+.+
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 23456666 99999988766 5678888776521 112222221 100 00 0134677899
Q ss_pred cCCCCEEEEecC-CCeEEEEECC---CCcEEEEecCCC--------------CCeeEEEEcCCCCEEEEEE
Q psy4869 590 SVSGLYVTAGSA-DKCVYIWDTT---TRRIAYKLPGHN--------------GSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 590 spdg~~Lasgs~-Dg~V~iwd~~---s~~~~~~l~~h~--------------~~V~~l~fspd~~~Lasgs 642 (2435)
|+||++|+++.. .+.|.+||+. +.+++..+.-.. +....++++|||++|+++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999988765 6899999985 345665554321 1368899999999999887
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-05 Score=96.64 Aligned_cols=249 Identities=8% Similarity=0.023 Sum_probs=159.6
Q ss_pred CEEEEEeCCCeEEEEecCCceee----EEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEeccCcc
Q psy4869 375 QYIASSGYDRQIFIWSVYGECEN----IGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQRIKKMKGHSTF 449 (2435)
Q Consensus 375 ~~Lasgs~Dg~I~iwd~~~~~~~----~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~~v~~l~~h~~~ 449 (2435)
.+|+.+.. +.|+.+++.+.... ...+......+..++|++++..|+.+. .++.|..+|+..+.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34444443 47888887654221 111211234578999999766666554 5689999999766544333333345
Q ss_pred ccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecC-cccEEEEEECCCCCEEEEEec---CCeEEEEECCCCcEEE
Q psy4869 450 VNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN-TYQVTSVAFNDTAECVLTGGI---DNDIKMWDLRTNSVVQ 525 (2435)
Q Consensus 450 v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~-~~~v~sv~~sp~g~~l~sgs~---dg~V~lwD~~s~~~v~ 525 (2435)
...+++.+.+..++++-...+.|.++++........... ......++++|++..|+.+.. .+.|..+++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 667888887778888888889999999875443322222 246789999998777766654 36898998764332 2
Q ss_pred EE-ecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC
Q psy4869 526 KL-RGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK 603 (2435)
Q Consensus 526 ~l-~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg 603 (2435)
.+ ...-.....+++++++.+|+.+. ..+.|.++|+.. ........+. .....++.. ++..+++....+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g----~~~~~~~~~~-----~~P~gi~~d-~~~lyva~~~~~ 229 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ----PGRRKVLEGL-----QYPFAVTSY-GKNLYYTDWKTN 229 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE----EEEEEEEECC-----CSEEEEEEE-TTEEEEEETTTT
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC----CceEEEecCC-----CCceEEEEe-CCEEEEEECCCC
Confidence 22 23334678999999887766555 568999999863 2222222221 123455554 344444445678
Q ss_pred eEEEEECCCCcEEEEecCCC-CCeeEEEEcCCC
Q psy4869 604 CVYIWDTTTRRIAYKLPGHN-GSVNDVQFHPKE 635 (2435)
Q Consensus 604 ~V~iwd~~s~~~~~~l~~h~-~~V~~l~fspd~ 635 (2435)
.|.++|..+++.+..+.... .....+++.|++
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 99999999999988886433 347788888775
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4.3e-07 Score=118.01 Aligned_cols=311 Identities=13% Similarity=0.077 Sum_probs=197.2
Q ss_pred EEEEEeCCCeEEEEEccccccccc-------------cccccccccccc------ceeeeeeccccccCCCEEEEEEcC-
Q psy4869 991 QVVTGGGDKSVKLWQLELVSVNRE-------------ADEETKDVSRSH------KVLSLLHTRTLKLEEQVLCARVSP- 1050 (2435)
Q Consensus 991 ~l~sgs~Dg~V~lW~l~~~~~~~~-------------~~~~~~~~~~~~------~~l~~~~~~~~~~~~~v~~l~~sp- 1050 (2435)
.|.+|+..|.|+++-+..+..... ..++++++.... +.+...-...+. .+......+|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~-~gd~hh~~~s~t 95 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHD-NGDLHHVHMSFT 95 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCC-CCCBCCEEEEEE
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecc-cCCCCccccCCC
Confidence 789999999999999865532211 122222222110 000000000011 12222355565
Q ss_pred ----CCCEEEEEECC-CcEEEEEcCCCeEEEEEec-CCcCEEEEEE-c-CCCCEEEEEEC------------------CC
Q psy4869 1051 ----DSKLLAVSLLD-TTVKIFFLDTFKFFISLYG-HKLPVLSLDM-S-YDSTLIATGSG------------------DR 1104 (2435)
Q Consensus 1051 ----dg~~Lavg~~d-g~V~i~d~~~~~~~~~l~~-h~~~V~sl~~-s-pdg~~L~Sgs~------------------Dg 1104 (2435)
||++|++...+ +.|.+.|+++.+....+.- .......+++ . |++++++++++ ++
T Consensus 96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 89999998764 6799999999998885542 2245788888 5 89999988852 45
Q ss_pred cEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCC---------------cEEEEeCCCcceeEEEEEEEeec
Q psy4869 1105 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG---------------RVKQWDADNFERIVTLHFFISLY 1169 (2435)
Q Consensus 1105 ~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg---------------~V~iwD~~~~~~~~~~~~~~~~~ 1169 (2435)
.+.++|.++.+.+.++..-. .-..++++|+++++++++.+. .|.++|......
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~----------- 243 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK----------- 243 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH-----------
T ss_pred eEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE-----------
Confidence 79999999999888886433 346778999999999988763 233333222110
Q ss_pred ccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC--Cce-eeEeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCC
Q psy4869 1170 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY--GDC-HKSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADN 1245 (2435)
Q Consensus 1170 ~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t--~~~-~~~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~ 1245 (2435)
+.++|+.... +.|.+.|.++ ++. +..+.. .....++.++||++++++++ .+.+|.++|+.+
T Consensus 244 ----------~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 244 ----------AIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp ----------HHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred ----------eccCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc
Confidence 1223443333 5599999998 555 455543 33567899999999888776 577788887764
Q ss_pred CceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCC
Q psy4869 1246 FERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD 1325 (2435)
Q Consensus 1246 ~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spd 1325 (2435)
.+... +++ +. . ..........+...+.++|+|+
T Consensus 309 ~~~~~---------------------~~~-----l~---------~------------~~~v~~~v~vG~gP~h~aF~~d 341 (595)
T 1fwx_A 309 FDAVF---------------------YEN-----AD---------P------------RSAVVAEPELGLGPLHTAFDGR 341 (595)
T ss_dssp HHHHH---------------------HSC-----CC---------G------------GGGEEECCBCCSCEEEEEECTT
T ss_pred ccccc---------------------ccc-----cC---------c------------ccceEEEcCCCCCcceEEECCC
Confidence 32110 000 00 0 0000112344566788999999
Q ss_pred cceeEEeecCCeEEEEEccc----------ceEEEEecCCCCCe-E----EEEEecCCCEEEEEeC
Q psy4869 1326 SKLLAVSLLDTTVKIFFLDT----------FKFFISLYGHKLPV-L----SLDMSYDSTLIATGSG 1376 (2435)
Q Consensus 1326 g~~lavgs~dG~V~v~d~~~----------~k~i~~~~~h~~~V-~----~la~spdg~~L~sGg~ 1376 (2435)
|..+.+...++.|.+||+++ .+.+..+..|..+- . .+.++|||++|++...
T Consensus 342 G~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 342 GNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 96667788999999999987 56788888776542 1 2245899999998754
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-06 Score=117.53 Aligned_cols=301 Identities=17% Similarity=0.144 Sum_probs=186.8
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCCe------------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSY------------ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI 963 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~------------v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~ 963 (2435)
+++.++...++.|.-+|..+++.+..++.... ...+++ .+..|++++.|+.|+.+|.++|+++..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 56555555678899999999999988764321 112233 3567888999999999999999988776
Q ss_pred ccccc-ceeEEEEecCCCCCCCcCCcceEEEEEeC------CCeEEEEEccccccccccccccccc--ccccceee-eee
Q psy4869 964 PAHSQ-ELWSVAMLPDQFNPNVYLPLQIQVVTGGG------DKSVKLWQLELVSVNREADEETKDV--SRSHKVLS-LLH 1033 (2435)
Q Consensus 964 ~~h~~-~V~sv~~s~d~~~~~~~~p~~~~l~sgs~------Dg~V~lW~l~~~~~~~~~~~~~~~~--~~~~~~l~-~~~ 1033 (2435)
..... ....+...|- -.+..++.+.. +|.|..+|...++..+......... ......+. ...
T Consensus 144 ~~~~~~~~~~~~~~P~--------v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 215 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPR--------VVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK 215 (668)
T ss_dssp ECSCTTSSCBCCSCCE--------EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred ccCCCCCcceecCCCE--------EECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccc
Confidence 44211 0000000000 00124555543 5899999998777655432110000 00000000 000
Q ss_pred cc----cc---ccCCCEEEEEEcCCCCEEEEEECCC-------------------cEEEEEcCCCeEEEEEec--CC---
Q psy4869 1034 TR----TL---KLEEQVLCARVSPDSKLLAVSLLDT-------------------TVKIFFLDTFKFFISLYG--HK--- 1082 (2435)
Q Consensus 1034 ~~----~~---~~~~~v~~l~~spdg~~Lavg~~dg-------------------~V~i~d~~~~~~~~~l~~--h~--- 1082 (2435)
.. .. ........+++++++.+++++..++ .|..+|.++++.+..++. |.
T Consensus 216 ~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd 295 (668)
T 1kv9_A 216 TWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD 295 (668)
T ss_dssp TCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred cCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccc
Confidence 00 00 0011223578999989999987665 389999999998888764 32
Q ss_pred ----cCEEEEEEcCCCC---EEEEEECCCcEEEEEccCCceeEEEeccCC------------C-----------------
Q psy4869 1083 ----LPVLSLDMSYDST---LIATGSGDRTVKVWGLDYGDCHKSLLAHED------------S----------------- 1126 (2435)
Q Consensus 1083 ----~~V~sl~~spdg~---~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~------------~----------------- 1126 (2435)
.+.....+..+|+ .++.++.+|.++++|..+|+.+........ +
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p 375 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence 3333334444665 688899999999999999998855432110 0
Q ss_pred -------EEEEEEccCCCEEEEEe------------------------------------CCCcEEEEeCCCcceeEEEE
Q psy4869 1127 -------VTGVTFVPKTHYFFTTS------------------------------------KDGRVKQWDADNFERIVTLH 1163 (2435)
Q Consensus 1127 -------V~~v~fsp~~~~l~s~s------------------------------------~Dg~V~iwD~~~~~~~~~~~ 1163 (2435)
-..++++|+...+++.. .++.|..||..+++.+....
T Consensus 376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~ 455 (668)
T 1kv9_A 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP 455 (668)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc
Confidence 01267777766665421 34789999999998877664
Q ss_pred EEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeecc
Q psy4869 1164 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1213 (2435)
Q Consensus 1164 ~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h 1213 (2435)
. ..+.....+...+.+++.|+.|+.|+.||.++++.+..+...
T Consensus 456 ~-------~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 456 Y-------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp E-------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred C-------CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 1 122222333446789999999999999999999998887654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-08 Score=124.43 Aligned_cols=187 Identities=14% Similarity=0.066 Sum_probs=107.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcc--cEE
Q psy4869 416 DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTY--QVT 493 (2435)
Q Consensus 416 dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~--~v~ 493 (2435)
++..|++++.|+.|+.||..+|+.+..+.. ..+.+..+..++ .++++++.|+.|+.||..+++.+....... .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 577899999999999999999999888876 445454445444 456677899999999999888776653321 111
Q ss_pred -EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEE
Q psy4869 494 -SVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572 (2435)
Q Consensus 494 -sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~ 572 (2435)
+..+ ..+..+++|+.++.|+.||.++|+.+..+..+. .+.++|++..+++++.|+.|+.||.++.. .+-.
T Consensus 85 ~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~----~~W~ 155 (369)
T 2hz6_A 85 ASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRE----LRWN 155 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSS----CCCE
T ss_pred cCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCC----EEEe
Confidence 0111 145678888899999999999999988776554 24566788999999999999999998532 2211
Q ss_pred EeCcccccccCeEEEEEcCCC---CEEEEecCCCeEEEEECCCCcEEEEec
Q psy4869 573 MSGHQHNFEKNLLRCAWSVSG---LYVTAGSADKCVYIWDTTTRRIAYKLP 620 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~spdg---~~Lasgs~Dg~V~iwd~~s~~~~~~l~ 620 (2435)
+.... .....+..++ ..+++++.||.|+.||.++|+.+....
T Consensus 156 ~~~~~------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 156 ATYFD------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEE------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred Eeccc------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 11110 0111223322 457778899999999999999887765
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.5e-06 Score=110.57 Aligned_cols=314 Identities=13% Similarity=0.085 Sum_probs=188.4
Q ss_pred CCcEEEEec-CCcEEEEeC-CCCceeEEEeCCCe------------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceee
Q psy4869 896 DNLALVSAC-ASQVKIWNR-PSLSCLRTIDTGSY------------ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILE 961 (2435)
Q Consensus 896 dg~~la~g~-~~~V~Iwd~-~~~~~~~~l~~~~~------------v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~ 961 (2435)
+++.++... ++.|.-+|. .+++.+..++.... ...+++ ++..|+++..++.|+.+|.++|+++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 555555555 678999999 99999987764321 112232 36678889999999999999999886
Q ss_pred ccccccc----ceeE-EEEecCCCCCCCcCCcceEEEEEeC------CCeEEEEEcccccccccccccccccc----c--
Q psy4869 962 DIPAHSQ----ELWS-VAMLPDQFNPNVYLPLQIQVVTGGG------DKSVKLWQLELVSVNREADEETKDVS----R-- 1024 (2435)
Q Consensus 962 ~~~~h~~----~V~s-v~~s~d~~~~~~~~p~~~~l~sgs~------Dg~V~lW~l~~~~~~~~~~~~~~~~~----~-- 1024 (2435)
....... .+.+ .... + ..++.+.. +|.|..+|...++..+.......... .
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-----------g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~ 207 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-----------DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDF 207 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-----------TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred EecCCCCCccceeccCCEEE-C-----------CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccc
Confidence 6542210 1110 0111 2 25555554 78999999987765544221110000 0
Q ss_pred --ccce-------eeeeeccccccCC--CEEEEEEcCCCCEEEEEECC----------------CcEEEEEcCCCeEEEE
Q psy4869 1025 --SHKV-------LSLLHTRTLKLEE--QVLCARVSPDSKLLAVSLLD----------------TTVKIFFLDTFKFFIS 1077 (2435)
Q Consensus 1025 --~~~~-------l~~~~~~~~~~~~--~v~~l~~spdg~~Lavg~~d----------------g~V~i~d~~~~~~~~~ 1077 (2435)
.... ............+ ....++++++...++++..+ +.|..+|.++++.+..
T Consensus 208 ~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~ 287 (571)
T 2ad6_A 208 NSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWG 287 (571)
T ss_dssp TTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEE
Confidence 0000 0000000000001 11235677877778777642 2589999999998887
Q ss_pred Eec--C--------CcCEEEEEEcCCCC---EEEEEECCCcEEEEEccCCceeEEEeccC-------------CCE----
Q psy4869 1078 LYG--H--------KLPVLSLDMSYDST---LIATGSGDRTVKVWGLDYGDCHKSLLAHE-------------DSV---- 1127 (2435)
Q Consensus 1078 l~~--h--------~~~V~sl~~spdg~---~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~-------------~~V---- 1127 (2435)
++. | ..++. +....+|+ .++.++.+|.+.++|.++|+.+....... .++
T Consensus 288 ~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~ 366 (571)
T 2ad6_A 288 YQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPE 366 (571)
T ss_dssp EESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGG
T ss_pred ecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccc
Confidence 753 2 12332 23234673 57788999999999999999887764321 111
Q ss_pred ----------------------EEEEEccCCCEEEEEe-------------------------------------CCCcE
Q psy4869 1128 ----------------------TGVTFVPKTHYFFTTS-------------------------------------KDGRV 1148 (2435)
Q Consensus 1128 ----------------------~~v~fsp~~~~l~s~s-------------------------------------~Dg~V 1148 (2435)
..++|+|+...+++.. .++.|
T Consensus 367 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l 446 (571)
T 2ad6_A 367 FATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQI 446 (571)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEE
T ss_pred cCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeE
Confidence 2357788777776653 34789
Q ss_pred EEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCC-EEEEEEeeCCC
Q psy4869 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS-VTGVTFVPKTH 1227 (2435)
Q Consensus 1149 ~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~-V~~i~~spd~~ 1227 (2435)
..||..+++.+..... ...+....+...+..++.++.||.|+.||.++|+.+..+...... ...+.+..+++
T Consensus 447 ~a~D~~tG~~~W~~~~-------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~ 519 (571)
T 2ad6_A 447 RAFDLTTGKAKWTKWE-------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK 519 (571)
T ss_dssp EEECTTTCCEEEEEEE-------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EEEECCCCCEEEEecC-------CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCE
Confidence 9999999988776641 112222222224668888999999999999999998887643321 12233445665
Q ss_pred EEEE
Q psy4869 1228 YFFT 1231 (2435)
Q Consensus 1228 ~lvs 1231 (2435)
+++.
T Consensus 520 ~yv~ 523 (571)
T 2ad6_A 520 QYIG 523 (571)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=7.9e-06 Score=109.54 Aligned_cols=315 Identities=14% Similarity=0.099 Sum_probs=190.2
Q ss_pred CCcEEEEec-CCcEEEEeC-CCCceeEEEeCCCe------------EEEEEEecCCCE----EEEEeCCCeEEEEEccCC
Q psy4869 896 DNLALVSAC-ASQVKIWNR-PSLSCLRTIDTGSY------------ALSVCFVPGDRH----VLVGTKDGRLLIVDIGAG 957 (2435)
Q Consensus 896 dg~~la~g~-~~~V~Iwd~-~~~~~~~~l~~~~~------------v~~vafspdg~~----Lavg~~dg~V~vwd~~sg 957 (2435)
+++.+++.. ++.|.-+|. .+++.+..++.... ...++++|.+.. |++++.|+.|+.+|.++|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 555555555 678999999 89999988774321 234566554444 888999999999999999
Q ss_pred ceeeccccccc----ceeE-EEEecCCCCCCCcCCcceEEEEEe------CCCeEEEEEcccccccccccccccccc---
Q psy4869 958 EILEDIPAHSQ----ELWS-VAMLPDQFNPNVYLPLQIQVVTGG------GDKSVKLWQLELVSVNREADEETKDVS--- 1023 (2435)
Q Consensus 958 ~~v~~~~~h~~----~V~s-v~~s~d~~~~~~~~p~~~~l~sgs------~Dg~V~lW~l~~~~~~~~~~~~~~~~~--- 1023 (2435)
+++........ .+.+ .... + ..++.++ .+|.|+.+|...++.............
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-----------g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~ 209 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-----------DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLL 209 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-----------TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTB
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-----------CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccc
Confidence 98866533210 1111 1111 2 2555555 379999999987776554322111100
Q ss_pred -cc----ccee-------eeeeccccccCC-C-EEEEEEcCCCCEEEEEECCC----------------cEEEEEcCCCe
Q psy4869 1024 -RS----HKVL-------SLLHTRTLKLEE-Q-VLCARVSPDSKLLAVSLLDT----------------TVKIFFLDTFK 1073 (2435)
Q Consensus 1024 -~~----~~~l-------~~~~~~~~~~~~-~-v~~l~~spdg~~Lavg~~dg----------------~V~i~d~~~~~ 1073 (2435)
.. ...+ ...........+ . -..+++.++..+++++..++ .|..+|.++++
T Consensus 210 ~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~ 289 (599)
T 1w6s_A 210 ASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE 289 (599)
T ss_dssp CTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred ccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence 00 0000 000000011111 1 12457778888888887653 79999999999
Q ss_pred EEEEEecCC----------cCEEEEEEc-CCC---CEEEEEECCCcEEEEEccCCceeEEEeccC-------------CC
Q psy4869 1074 FFISLYGHK----------LPVLSLDMS-YDS---TLIATGSGDRTVKVWGLDYGDCHKSLLAHE-------------DS 1126 (2435)
Q Consensus 1074 ~~~~l~~h~----------~~V~sl~~s-pdg---~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~-------------~~ 1126 (2435)
.+-.++... .++. +... .+| ..++.++.+|.+.++|.++|+.+....... .+
T Consensus 290 ~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p 368 (599)
T 1w6s_A 290 AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQP 368 (599)
T ss_dssp EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCE
T ss_pred eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCce
Confidence 888776421 2232 2332 467 467778999999999999999887664211 11
Q ss_pred E--------------------------EEEEEccCCCEEEEEe-------------------------------------
Q psy4869 1127 V--------------------------TGVTFVPKTHYFFTTS------------------------------------- 1143 (2435)
Q Consensus 1127 V--------------------------~~v~fsp~~~~l~s~s------------------------------------- 1143 (2435)
+ ..++|+|+..++++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~ 448 (599)
T 1w6s_A 369 VRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN 448 (599)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT
T ss_pred eeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCccc
Confidence 1 2356666655554421
Q ss_pred --CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCC-EEEE
Q psy4869 1144 --KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS-VTGV 1220 (2435)
Q Consensus 1144 --~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~-V~~i 1220 (2435)
.++.|..||+.+++.+..... ..++..-.+.-.+.+++.++.|+.++.||.++|+.+..++-.... ..-+
T Consensus 449 ~~~~G~l~A~D~~tG~~~W~~~~-------~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~ 521 (599)
T 1w6s_A 449 YEGLGQIKAYNAITGDYKWEKME-------RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPM 521 (599)
T ss_dssp TBCCEEEEEECTTTCCEEEEEEE-------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred CCCcCeEEEEECCCCCEEeEecC-------CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccE
Confidence 347899999999988776641 111111112224678888999999999999999998887643321 1224
Q ss_pred EEeeCCCEEE
Q psy4869 1221 TFVPKTHYFF 1230 (2435)
Q Consensus 1221 ~~spd~~~lv 1230 (2435)
.|..++++.+
T Consensus 522 ~y~~~G~qyv 531 (599)
T 1w6s_A 522 TYTHKGTQYV 531 (599)
T ss_dssp EEEETTEEEE
T ss_pred EEEeCCEEEE
Confidence 4555665443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.57 E-value=0.02 Score=82.37 Aligned_cols=464 Identities=13% Similarity=0.070 Sum_probs=237.2
Q ss_pred EEEEecCCcEEEEeCCCCceeEEEeC--CCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc-cccccceeEEEE
Q psy4869 899 ALVSACASQVKIWNRPSLSCLRTIDT--GSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI-PAHSQELWSVAM 975 (2435)
Q Consensus 899 ~la~g~~~~V~Iwd~~~~~~~~~l~~--~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~-~~h~~~V~sv~~ 975 (2435)
.++--+.+.|++.+....+.+..... +..+...+ -++..|+++. ++.+.++++.++++.... ..-..+|.|+++
T Consensus 485 ~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As--~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i 561 (1158)
T 3ei3_A 485 QLIQITSASVRLVSQEPKALVSEWKEPQAKNISVAS--CNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDI 561 (1158)
T ss_dssp EEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEE--ECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEEC
T ss_pred eEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEE--eCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEe
Confidence 33344445566666555445544442 23343333 2345777774 678888888777643221 112457999998
Q ss_pred ecCCCCCCCcCCcceEEEEEeC-CCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCE
Q psy4869 976 LPDQFNPNVYLPLQIQVVTGGG-DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1054 (2435)
Q Consensus 976 s~d~~~~~~~~p~~~~l~sgs~-Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 1054 (2435)
.+..... .....++.|.. |+.|++++++..+.... .. +. . -.....+.-+.+ ....+
T Consensus 562 ~~~~~~~----~~s~~~aVg~~~d~tv~I~sL~~l~~~~~-----~~-------L~---~--~~~p~si~l~~~-~~~~~ 619 (1158)
T 3ei3_A 562 TPLGDSN----GLSPLCAIGLWTDISARILKLPSFELLHK-----EM-------LG---G--EIIPRSILMTTF-ESSHY 619 (1158)
T ss_dssp CCCSSST----TCCSEEEEEETTTTEEEEEETTTCCEEEE-----EE-------CC---S--SCCEEEEEEEEE-TTEEE
T ss_pred ecCCCCc----ccccEEEEEECCCCEEEEEECCCCCeEEE-----EE-------CC---C--CCCCcEEEEEEe-CCCcE
Confidence 7642101 12357888886 99999999864321100 00 00 0 001122333334 23468
Q ss_pred EEEEECCCcEEEEEcC--CCeEEEE---EecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEE
Q psy4869 1055 LAVSLLDTTVKIFFLD--TFKFFIS---LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1129 (2435)
Q Consensus 1055 Lavg~~dg~V~i~d~~--~~~~~~~---l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~ 1129 (2435)
|.+|..||.+..+.++ ++++... +-| ..++.=..+...+..-+-+..+.-..++.-+ ++....-.....--..
T Consensus 620 L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~ 697 (1158)
T 3ei3_A 620 LLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYM 697 (1158)
T ss_dssp EEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEE
T ss_pred EEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceE
Confidence 9999999998777664 4444322 223 3344444444444433333445555555433 3322221111112234
Q ss_pred EEEccC--CCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcee
Q psy4869 1130 VTFVPK--THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1207 (2435)
Q Consensus 1130 v~fsp~--~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~ 1207 (2435)
..|+.. .+-++..+ ++.+++..+......... . ..-...+..++++|+.+.++++..+. ..++.......
T Consensus 698 ~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~----~-ipL~~Tprri~y~~~~~~~~v~~~~~--~~~~~~~~~~~ 769 (1158)
T 3ei3_A 698 CPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIR----T-VPLYESPRKICYQEVSQCFGVLSSRI--EVQDTSGGTTA 769 (1158)
T ss_dssp EEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEE----E-EECSSEEEEEEEEGGGTEEEEEEEEE--EEECSSSSEEE
T ss_pred eccCcccCCCcEEEEc-CCceEEEEecccCCeeEE----E-EeCCCCceEEEEcCCCCEEEEEEEec--cccccccccch
Confidence 445432 23344433 456999988654332211 1 12345788899998888777665332 11121100000
Q ss_pred ----------eEe-----------------eccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccc
Q psy4869 1208 ----------KSL-----------------LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYL 1260 (2435)
Q Consensus 1208 ----------~~~-----------------~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~ 1260 (2435)
... .+......++.+.... .-..+.-+++...+.+..+..-... .
T Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~-------t~~~i~~~~l~~nE~~~sv~~v~~~-~ 841 (1158)
T 3ei3_A 770 LRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQH-------TFEVLHAHQFLQNEYALSLVSCKLG-K 841 (1158)
T ss_dssp SSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETT-------TCCEEEEEECCTTEEEEEEEEECCT-T
T ss_pred hhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCC-------CCeEEEEEeCCCCcceEEEEEEEEc-c
Confidence 000 0000112233222110 1123445566655554443211110 0
Q ss_pred cCceEEEEEE----------CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeE
Q psy4869 1261 PLQIQVVTGG----------GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1330 (2435)
Q Consensus 1261 ~~~~~lv~g~----------~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~la 1330 (2435)
.....+++|. ..|.+.+|++... ... .......++.+.+++-. +| +|+
T Consensus 842 ~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~------------------kL~--lv~~~~v~g~v~al~~~-~g-~Ll 899 (1158)
T 3ei3_A 842 DPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG------------------KLQ--TVAEKEVKGAVYSMVEF-NG-KLL 899 (1158)
T ss_dssp CCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT------------------EEE--EEEEEEESSCEEEEEEE-TT-EEE
T ss_pred CCCEEEEEEeeecCCCCCCCCceEEEEEEEECC------------------EEE--EEEEEEcCCcCEEEeee-CC-EEE
Confidence 1223555554 3467888887410 111 11223456788888654 34 444
Q ss_pred EeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC--CCCceEEEec-ccccceEEEEEe
Q psy4869 1331 VSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL--DYGDCHKSLL-AHEDSVTGVTFV 1407 (2435)
Q Consensus 1331 vgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl--~~gk~~~~~~-~h~~~V~~laf~ 1407 (2435)
+| ....|++|++...+.+..-..+...|..+.....+++|+.|+.-..|.++.+ ..+++.-..+ .+..||+++.|-
T Consensus 900 a~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~l 978 (1158)
T 3ei3_A 900 AS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 978 (1158)
T ss_dssp EE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEE
T ss_pred EE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEE
Confidence 43 4689999999876544311112222334444446789999998888777554 4455544333 356799999998
Q ss_pred eCCCEEEEEeCCCcEEEEECCC
Q psy4869 1408 PKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1408 P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
.+. .++.+..+|.|.+...+.
T Consensus 979 d~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 979 DDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ETT-EEEEEETTSEEEEEEECT
T ss_pred ccC-cEEEEcCCCcEEEEecCC
Confidence 654 777789999998887764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=6.9e-06 Score=112.68 Aligned_cols=290 Identities=14% Similarity=0.136 Sum_probs=180.5
Q ss_pred CCEEEEEECCCcEEEEEccCCceeEEEeccCCC----------E-EEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1094 STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS----------V-TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1094 g~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~----------V-~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
+..|+.++.++.|..+|..+|+.+..+...... + ..+.+ .+..+++++.|+.|..+|..+++.+...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777888999999999999998887543210 0 12223 2557888889999999999999988876
Q ss_pred EEEEeecccccCeEE-EEEeCCCCEEEEEeC------CCcEEEEEccCCceeeEeeccC---C-----------------
Q psy4869 1163 HFFISLYGHKLPVLS-LDMSYDSTLIATGSG------DRTVKVWGLDYGDCHKSLLAHE---D----------------- 1215 (2435)
Q Consensus 1163 ~~~~~~~~h~~~V~~-l~~s~dg~~l~sgs~------Dg~V~iwd~~t~~~~~~~~~h~---~----------------- 1215 (2435)
.... ......+.+ ..+ .+..++++.. +|.|+.+|.++|+.+..+.... .
T Consensus 144 ~~~~--~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 144 QTTD--PAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp ECSC--TTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred ccCC--CCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 5210 000011110 011 1345666543 5899999999999887764210 0
Q ss_pred -----------CEEEEEEeeCCCEEEEEECCCc-------------------EEEEECCCCceEEEEeeCCcccccCceE
Q psy4869 1216 -----------SVTGVTFVPKTHYFFTTSKDGR-------------------VKQWDADNFERIVTLHFNPNVYLPLQIQ 1265 (2435)
Q Consensus 1216 -----------~V~~i~~spd~~~lvsgs~Dg~-------------------I~vwD~~~~~~v~~~~~~~~~~~~~~~~ 1265 (2435)
....+.+.++...++.+..++. |..+|.++++.+..++.....
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~------- 292 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGD------- 292 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC-------
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCc-------
Confidence 0123567777777777766553 444555444443333221100
Q ss_pred EEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcc---eeEEeecCCeEEEEE
Q psy4869 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK---LLAVSLLDTTVKIFF 1342 (2435)
Q Consensus 1266 lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~---~lavgs~dG~V~v~d 1342 (2435)
.||. ..........+..+|+ .+++++.+|.++++|
T Consensus 293 -----------~wd~-------------------------------~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD 330 (668)
T 1kv9_A 293 -----------SWDF-------------------------------TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLD 330 (668)
T ss_dssp -----------CSCC-------------------------------CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEE
T ss_pred -----------cccc-------------------------------cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEE
Confidence 0000 0011111122223564 688899999999999
Q ss_pred cccceEEEEecCCCC------------Ce------------------------EEEEEecCCCEEEEE------------
Q psy4869 1343 LDTFKFFISLYGHKL------------PV------------------------LSLDMSYDSTLIATG------------ 1374 (2435)
Q Consensus 1343 ~~~~k~i~~~~~h~~------------~V------------------------~~la~spdg~~L~sG------------ 1374 (2435)
..+++++........ ++ ..++++|+..+++..
T Consensus 331 ~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~ 410 (668)
T 1kv9_A 331 RTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEG 410 (668)
T ss_dssp TTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCG
T ss_pred CCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeec
Confidence 999998754432110 00 126788887766642
Q ss_pred ------------------------eCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1375 ------------------------SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1375 ------------------------g~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
..+|.|..||+.+|+.+-+.+.+ .++....+...+.+++.++.||.|+.||..+.
T Consensus 411 ~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 411 KDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp GGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 13478999999999987665543 33444555567888888999999999999999
Q ss_pred eeEEEEeec
Q psy4869 1431 ERIVTLHIC 1439 (2435)
Q Consensus 1431 ~~l~~~~~~ 1439 (2435)
+.+.++...
T Consensus 490 ~~l~~~~~~ 498 (668)
T 1kv9_A 490 EALWQFEAQ 498 (668)
T ss_dssp CEEEEEECS
T ss_pred hhheEecCC
Confidence 999988743
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-08 Score=126.63 Aligned_cols=190 Identities=15% Similarity=0.092 Sum_probs=115.2
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCC-CEE-
Q psy4869 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVT- 1128 (2435)
Q Consensus 1051 dg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~-~V~- 1128 (2435)
++..|++++.||.|+.||..+++.+..+.. ..+.+..+..++..+++++.||.|+.||.++|+.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578899999999999999999999888876 4555555566777888888999999999999988776643211 010
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceee
Q psy4869 1129 GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1208 (2435)
Q Consensus 1129 ~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~ 1208 (2435)
...+. .+..+++++.|+.|+.||..+++.+..+. .+. ...++|++..+++++.|+.|+.||.++|+.+.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~------~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS------SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec------CCC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 00111 34567888889999999999998876653 111 12345678899999999999999999999776
Q ss_pred EeeccCCCEEEEEEeeCC---CEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1209 SLLAHEDSVTGVTFVPKT---HYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1209 ~~~~h~~~V~~i~~spd~---~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
.+..+. .....+.++. ..+++++.||.|..||.++++.+......
T Consensus 155 ~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 155 NATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp EEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred eEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 654321 1122233321 56788899999999999999887776643
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-05 Score=100.00 Aligned_cols=227 Identities=13% Similarity=0.091 Sum_probs=149.7
Q ss_pred CCCCEEEE-EeCCCeEEEEecCCc---eeeEEEee------C-CCCCeeEEEEccCCCEEEEEeCC------CeEEEEEC
Q psy4869 372 PDGQYIAS-SGYDRQIFIWSVYGE---CENIGVMS------G-HTGAVMDLKFSTDGCHIFTCSTD------QTLAVWDL 434 (2435)
Q Consensus 372 pdg~~Las-gs~Dg~I~iwd~~~~---~~~~~~l~------~-h~~~V~~l~~s~dg~~L~s~s~D------g~I~vwd~ 434 (2435)
+++++|+. |..+++|.++|+... .+....+. . -...-..+...|+| .++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67777665 557889999998633 12222231 1 11245667888999 76666555 78999999
Q ss_pred CCCceEEEEeccCc---cccccCcccCCCeEEEEE------------------eCCCeEEEEeCCCCcceEeecCc---c
Q psy4869 435 EKGQRIKKMKGHST---FVNSCDPVRRGQLLIASG------------------SDDCTVKVWDPRKKNQAVSMNNT---Y 490 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~---~v~sv~~~~~~~~llasg------------------s~Dg~I~vwD~~~~~~~~~~~~~---~ 490 (2435)
++++.+.++..... .-..+.|+|+++.++.+- ..+.+|.+||+.+++.+..+... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999998863321 223456688887555442 24789999999988777766543 3
Q ss_pred cEEEEEE--CCCCCEEEEEec------CCeEEEEECCCCcE--EEEE--ecC----------------CCCEEEEEEcCC
Q psy4869 491 QVTSVAF--NDTAECVLTGGI------DNDIKMWDLRTNSV--VQKL--RGH----------------SDTVTGLSLSPD 542 (2435)
Q Consensus 491 ~v~sv~~--sp~g~~l~sgs~------dg~V~lwD~~s~~~--v~~l--~~h----------------~~~V~~i~~spd 542 (2435)
....++| +|+++++++++. ++.|.+|....++. +..+ ... ......|.++||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 4555656 999999998874 56888776655432 1111 110 245788999999
Q ss_pred CCEEEEEEC-CCcEEEEEcCCCCCCCceEEEEeCcc----------cccccCeEEEEEcCCCCEEEEec
Q psy4869 543 GSYILSNAM-DNTVRIWDIRPYVPGERCVKVMSGHQ----------HNFEKNLLRCAWSVSGLYVTAGS 600 (2435)
Q Consensus 543 g~~las~s~-Dg~I~lWdl~~~~~~~~~v~~~~~h~----------~~~~~~i~~v~~spdg~~Lasgs 600 (2435)
|++|+++.. .+.|.+||+... ...+.+..+.... .........+.++|||++|++..
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~-~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNP-FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSST-TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCC-CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999998775 789999999632 1234444443210 00111346789999999999887
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=0.02 Score=77.30 Aligned_cols=466 Identities=8% Similarity=0.015 Sum_probs=244.0
Q ss_pred eeeCCCCceEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEE-c
Q psy4869 18 IIASPNCNVVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAY-T 95 (2435)
Q Consensus 18 ~~~~~~~~v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~-~ 95 (2435)
++.+.-.+++.++++..+|++..+- ..+.|..++++..... +.....+ ......++.++.+..|.++. .
T Consensus 34 ~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--------~~v~~~~-~~~P~GlAvD~~~~~ly~~d~~ 104 (619)
T 3s94_A 34 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------QNVVVSG-LLSPDGLACDWLGEKLYWTDSE 104 (619)
T ss_dssp --CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C--------EEEECSS-CSCEEEEEEETTTTEEEEEETT
T ss_pred EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--------EEEEeCC-CCCcCeEEEEecCCEEEEEeCC
Confidence 3445556788899988888777665 6778888887643210 1111111 12345678887666666665 4
Q ss_pred CCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeC--CCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCC
Q psy4869 96 NGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSK--DTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGH 173 (2435)
Q Consensus 96 ~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~--Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~ 173 (2435)
++.|.+.+++.......+.+.-..-..|+++|.+.+|.-... .+.|...++............-.....|++.+. ++
T Consensus 105 ~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~-~~ 183 (619)
T 3s94_A 105 TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQ 183 (619)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETT-TT
T ss_pred CCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEcc-CC
Confidence 678999999876544444344556778999997666555443 355666665443332223334456788998753 45
Q ss_pred cEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhccee
Q psy4869 174 HFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQL 253 (2435)
Q Consensus 174 ~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~ 253 (2435)
.+.++-...+.|...|++.........+....-.++++..+ ..+++-...+.|...|..+++....+..
T Consensus 184 ~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~---------- 252 (619)
T 3s94_A 184 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHS---------- 252 (619)
T ss_dssp EEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCS----------
T ss_pred EEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEec----------
Confidence 56667777888999998754432222212222345555433 3333444567788888765543211100
Q ss_pred ecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCc
Q psy4869 254 LLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDRE 333 (2435)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~ 333 (2435)
....+. .+. ........ .+ .+.+.. ....-..+-+....
T Consensus 253 --~~~~p~----~i~--v~~~~~qp-~~--------------------~n~C~~------------~ng~Cs~lCl~~~~ 291 (619)
T 3s94_A 253 --DIFSPM----DIH--AFSQQRQP-NA--------------------TNPCGI------------DNGGCSHLCLMSPV 291 (619)
T ss_dssp --CCCCCS----EEE--ECCGGGSC-CC--------------------CCTTTT------------TGGGCSSEEEECSS
T ss_pred --CCCCCc----EEE--EEccccCC-Cc--------------------cccccC------------CCCcccceEECCCC
Confidence 000000 000 00000000 00 000000 00000001111000
Q ss_pred cceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee-CCCCCeeEEE
Q psy4869 334 KNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS-GHTGAVMDLK 412 (2435)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~-~h~~~V~~l~ 412 (2435)
.......... -+.+. .+..+|.. . ...+|+.+ ..+.|+..++.........+. ..-..+..|+
T Consensus 292 ~~~~~C~C~~-----------g~~l~--~d~~~C~~-~-~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld 355 (619)
T 3s94_A 292 KPFYQCACPT-----------GVKLL--ENGKTCKD-G-ATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAID 355 (619)
T ss_dssp TTSEEEECCT-----------TCCBC--TTSSCBCS-S-CSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEE
T ss_pred CCCceEeCCc-----------hheec--ccCcccCC-C-CceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEE
Confidence 0000000000 00010 01111111 1 12244443 345677777754322111111 1234578899
Q ss_pred EccCCCEEEEEe-CCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcc
Q psy4869 413 FSTDGCHIFTCS-TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTY 490 (2435)
Q Consensus 413 ~s~dg~~L~s~s-~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~ 490 (2435)
|++.+..|+.+. ..+.|+.++++.......+.........+++.+.+.++.++-...+.|.+.++......... ..-.
T Consensus 356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~ 435 (619)
T 3s94_A 356 YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLE 435 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCC
T ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCC
Confidence 998655655554 57889999987644444444333456677777667788888788899999998765433332 2345
Q ss_pred cEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcC
Q psy4869 491 QVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIR 561 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~ 561 (2435)
....++++|...+|+.... .+.|...++............-...++|++++++..|+.+. ..+.|..+++.
T Consensus 436 ~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 436 EPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp SEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred CeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 6899999998666666543 36787777764333222333345678999999877777665 45788888886
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-05 Score=105.37 Aligned_cols=319 Identities=13% Similarity=0.079 Sum_probs=188.9
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCCeE----------EEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSYA----------LSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPA 965 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v----------~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~ 965 (2435)
+++.++.+..+.|.-+|..+++.+..++..... ..+++ .+..|++++.++.|+.+|.++|+++.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 565555555456889999999999877643211 22233 356788899999999999999998866543
Q ss_pred ccc----cee-EEEEecCCCCCCCcCCcce-EEEEEe------CCCeEEEEEccccccccccccccccccc-ccceeeee
Q psy4869 966 HSQ----ELW-SVAMLPDQFNPNVYLPLQI-QVVTGG------GDKSVKLWQLELVSVNREADEETKDVSR-SHKVLSLL 1032 (2435)
Q Consensus 966 h~~----~V~-sv~~s~d~~~~~~~~p~~~-~l~sgs------~Dg~V~lW~l~~~~~~~~~~~~~~~~~~-~~~~l~~~ 1032 (2435)
... .+. +.....+.. .+. .++.+. .+|.|..+|...++...........+.. ........
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~-------~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~ 218 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGK-------TGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVT 218 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTT-------TCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEES
T ss_pred CCCCcCcccccCCEEeCCCc-------CCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccc
Confidence 221 111 111111100 011 455554 2789999998877655532211000000 00000000
Q ss_pred --------ecc---------cccc--CCCEEEEEEcCCCCEEEEEEC--------------------C----CcEEEEEc
Q psy4869 1033 --------HTR---------TLKL--EEQVLCARVSPDSKLLAVSLL--------------------D----TTVKIFFL 1069 (2435)
Q Consensus 1033 --------~~~---------~~~~--~~~v~~l~~spdg~~Lavg~~--------------------d----g~V~i~d~ 1069 (2435)
... .... ...-..++++|+..+++++.. | +.|..+|.
T Consensus 219 g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~ 298 (582)
T 1flg_A 219 GDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP 298 (582)
T ss_dssp SCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT
T ss_pred cccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC
Confidence 000 0000 011134678888888888773 2 57999999
Q ss_pred CCCeEEEEEec--CC--------cCEEEEEEc-CCCC---EEEEEECCCcEEEEEccCCceeEEEeccC-----------
Q psy4869 1070 DTFKFFISLYG--HK--------LPVLSLDMS-YDST---LIATGSGDRTVKVWGLDYGDCHKSLLAHE----------- 1124 (2435)
Q Consensus 1070 ~~~~~~~~l~~--h~--------~~V~sl~~s-pdg~---~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~----------- 1124 (2435)
.+++.+-.++. |. .++. +... .+|+ .++.++.+|.++++|.++|+.+..+....
T Consensus 299 ~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~ 377 (582)
T 1flg_A 299 SSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK 377 (582)
T ss_dssp TTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT
T ss_pred CCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc
Confidence 99998888753 32 2333 2222 4664 78889999999999999999887665321
Q ss_pred --CC--------------------------------EEEEEEccCCCEEEEEe---------------------------
Q psy4869 1125 --DS--------------------------------VTGVTFVPKTHYFFTTS--------------------------- 1143 (2435)
Q Consensus 1125 --~~--------------------------------V~~v~fsp~~~~l~s~s--------------------------- 1143 (2435)
.+ ...++++|+...+++..
T Consensus 378 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 457 (582)
T 1flg_A 378 TGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRI 457 (582)
T ss_dssp TCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred CCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceee
Confidence 00 01345666555554432
Q ss_pred ------CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCE
Q psy4869 1144 ------KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1217 (2435)
Q Consensus 1144 ------~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V 1217 (2435)
.++.|..||+.+++.+..... ..++..-.....+.+++.|+.|+.++.||.++|+.+..++.....+
T Consensus 458 ~p~~~~~~G~l~A~D~~tG~~~W~~~~-------~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~ 530 (582)
T 1flg_A 458 KRMYDDHVGSLRAMDPVSGKVVWEHKE-------HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIV 530 (582)
T ss_dssp EESCSSCSEEEEEECTTTCCEEEEEEE-------SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCCCCCCcceEEEEECCCCCEEEEecC-------CCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcc
Confidence 257899999999988776641 1122111112246788889999999999999999998886543321
Q ss_pred -EEEEEeeCCCEEEE
Q psy4869 1218 -TGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1218 -~~i~~spd~~~lvs 1231 (2435)
.-+.|..++++.++
T Consensus 531 a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 531 SPPITWEQDGEQYLG 545 (582)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred cCceEEEECCEEEEE
Confidence 22555566664443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=0.022 Score=76.90 Aligned_cols=229 Identities=10% Similarity=0.040 Sum_probs=134.1
Q ss_pred CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCce-EEEEeccCccccccCcccCC
Q psy4869 382 YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQR-IKKMKGHSTFVNSCDPVRRG 459 (2435)
Q Consensus 382 ~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~~-v~~l~~h~~~v~sv~~~~~~ 459 (2435)
....|++.++.+...........-..+..|+|++.+..|+.+. ..+.|..++++.... ...+.........+++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 3556777777543212222233345678999998766666554 467899999865432 22333333456678887777
Q ss_pred CeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCCEEE
Q psy4869 460 QLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDTVTG 536 (2435)
Q Consensus 460 ~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~V~~ 536 (2435)
..++++-...+.|.+.++......... ..-.....++++|.+.+|+.... .+.|...++............-...++
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 788888888899999999865543333 34455778999998777776653 467888887644333333333456799
Q ss_pred EEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcE
Q psy4869 537 LSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI 615 (2435)
Q Consensus 537 i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~ 615 (2435)
|++++++..|+.+. ..+.|..+|+.. ........+.. .....+++..+ ..+.+-...+.|...|..+++.
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG----~~~~~~~~~~~----~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDG----TNRQAVVKGSL----PHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSC----CEEC-------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCC----CccEEEEeCCC----CCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 99999877666554 567888888762 11111111110 11234555544 3444444566787788777765
Q ss_pred EEEe
Q psy4869 616 AYKL 619 (2435)
Q Consensus 616 ~~~l 619 (2435)
...+
T Consensus 247 ~~~i 250 (619)
T 3s94_A 247 LREI 250 (619)
T ss_dssp CEEC
T ss_pred cEEE
Confidence 5544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-06 Score=110.03 Aligned_cols=249 Identities=15% Similarity=0.101 Sum_probs=163.3
Q ss_pred CCCcEEEEecC--CcEEEEeCCCCceeE--EEeCCCeEEEEEE-e-cCCCEEEEEe------------------CCCeEE
Q psy4869 895 SDNLALVSACA--SQVKIWNRPSLSCLR--TIDTGSYALSVCF-V-PGDRHVLVGT------------------KDGRLL 950 (2435)
Q Consensus 895 ~dg~~la~g~~--~~V~Iwd~~~~~~~~--~l~~~~~v~~vaf-s-pdg~~Lavg~------------------~dg~V~ 950 (2435)
+||++|+.... +.|.+.|+++.++.. .++.+..+..+++ . |++++|++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48999999774 579999999999887 5555677888998 5 9999999884 356899
Q ss_pred EEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeC-C--------------CeEEEEEcccccccccc
Q psy4869 951 IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG-D--------------KSVKLWQLELVSVNREA 1015 (2435)
Q Consensus 951 vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~-D--------------g~V~lW~l~~~~~~~~~ 1015 (2435)
+.|.++.+++.++.... .-..+++++++ ..+++.+. + ..|.+.++......-..
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdG----------k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEG----------KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSS----------SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCC----------CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 99999999888876433 33566777775 34444443 3 33666665322110000
Q ss_pred cccccccccccceeeeee------ccccccCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCe------------EEE
Q psy4869 1016 DEETKDVSRSHKVLSLLH------TRTLKLEEQVLCARVSPDSKLLAVSLL-DTTVKIFFLDTFK------------FFI 1076 (2435)
Q Consensus 1016 ~~~~~~~~~~~~~l~~~~------~~~~~~~~~v~~l~~spdg~~Lavg~~-dg~V~i~d~~~~~------------~~~ 1076 (2435)
+. ...+ ....++.... ...+.......++.++|||+++++++. +..|.++|+.+.+ ...
T Consensus 248 Gk-~~~i-~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 248 GD-YQEL-NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp TC-SEEE-TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred CC-eeEE-CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 00 0001 1111222221 112334557789999999999988864 5899999998653 334
Q ss_pred EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC----------CceeEEEeccCCCE-----EEEEEccCCCEEEE
Q psy4869 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY----------GDCHKSLLAHEDSV-----TGVTFVPKTHYFFT 1141 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t----------~~~~~~l~~h~~~V-----~~v~fsp~~~~l~s 1141 (2435)
.+. -......++|+++|...++.-.|+.|.+||++. .+.+..+..|..+- .++.+.|||++|++
T Consensus 326 ~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 326 EPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp CCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred EcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 443 234578899999995445666799999999987 55677776665432 12244689999998
Q ss_pred EeCC--CcE-----------EEEeCCCcc
Q psy4869 1142 TSKD--GRV-----------KQWDADNFE 1157 (2435)
Q Consensus 1142 ~s~D--g~V-----------~iwD~~~~~ 1157 (2435)
...- ..+ .++|+...+
T Consensus 405 ~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 405 LSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 8642 233 788885444
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00011 Score=98.55 Aligned_cols=331 Identities=14% Similarity=0.035 Sum_probs=188.1
Q ss_pred CCEEEEEEC-CCcEEEEEc-CCCeEEEEEecCCc----------C-EEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE
Q psy4869 1052 SKLLAVSLL-DTTVKIFFL-DTFKFFISLYGHKL----------P-VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1052 g~~Lavg~~-dg~V~i~d~-~~~~~~~~l~~h~~----------~-V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~ 1118 (2435)
+..|++++. ++.|..+|. .+++.+-.+..... . -..+++ ++..++.++.|+.|..+|.++|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 556777777 789999999 89988777642211 0 011222 35678888899999999999999988
Q ss_pred EEeccC----CCEEE-EEEccCCCEEEEEeC------CCcEEEEeCCCcceeEEEEEEEee-cc----------------
Q psy4869 1119 SLLAHE----DSVTG-VTFVPKTHYFFTTSK------DGRVKQWDADNFERIVTLHFFISL-YG---------------- 1170 (2435)
Q Consensus 1119 ~l~~h~----~~V~~-v~fsp~~~~l~s~s~------Dg~V~iwD~~~~~~~~~~~~~~~~-~~---------------- 1170 (2435)
...... ..+.. ... .+..+++++. ++.|+.+|..+++.+..+...... ..
T Consensus 140 ~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 765321 01111 111 1345666654 789999999999988876521110 00
Q ss_pred -------------c-ccCe-EEEEEeCCCCEEEEEeCC----------------CcEEEEEccCCceeeEeec--cC---
Q psy4869 1171 -------------H-KLPV-LSLDMSYDSTLIATGSGD----------------RTVKVWGLDYGDCHKSLLA--HE--- 1214 (2435)
Q Consensus 1171 -------------h-~~~V-~~l~~s~dg~~l~sgs~D----------------g~V~iwd~~t~~~~~~~~~--h~--- 1214 (2435)
+ ...+ ..+++.++...++.+..+ +.|..+|.++|+.+..++. |.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 0 0000 135666766777776632 3599999999998877653 21
Q ss_pred -----CCEEEEEEeeCCC---EEEEEECCCcEEEEECCCCceEEEEeeCCcc----------------------------
Q psy4869 1215 -----DSVTGVTFVPKTH---YFFTTSKDGRVKQWDADNFERIVTLHFNPNV---------------------------- 1258 (2435)
Q Consensus 1215 -----~~V~~i~~spd~~---~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~---------------------------- 1258 (2435)
.++. +....+++ .++.++.+|.+.++|..+++.+....+....
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 376 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT 376 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence 1221 22224663 5777889999999999999988877654311
Q ss_pred ----------------cccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEe
Q psy4869 1259 ----------------YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV 1322 (2435)
Q Consensus 1259 ----------------~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~ 1322 (2435)
+.|....+++...+....++..+. ... ... ..-+....+..
T Consensus 377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~---------~~~-------------~g~-~~~g~~~~~~~ 433 (571)
T 2ad6_A 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFML---------PYR-------------AGQ-FFVGATLAMYP 433 (571)
T ss_dssp EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC---------CCC-------------TTS-CCCCEEEEEEE
T ss_pred EECCCCccccCCCCceECCCCCEEEEEchhcccccccccc---------ccc-------------cCC-ccccccceecc
Confidence 000111111111111111111000 000 000 00000001111
Q ss_pred cCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeccccc-ce
Q psy4869 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SV 1401 (2435)
Q Consensus 1323 spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~-~V 1401 (2435)
+|.+. + ...+|.|..||..+++.+..+.... ++....+...+..|+.|+.|+.|+.+|.++|+++.+++.... .-
T Consensus 434 ~~~~~-~--~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 509 (571)
T 2ad6_A 434 GPNGP-T--KKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG 509 (571)
T ss_dssp CTTST-T--SCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred Ccccc-C--CCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEe
Confidence 22211 0 0246889999999998877776332 222223344567788899999999999999999887663321 11
Q ss_pred EEEEEeeCCCEEE
Q psy4869 1402 TGVTFVPKTHYFF 1414 (2435)
Q Consensus 1402 ~~laf~P~~~~la 1414 (2435)
.-+.+..++..++
T Consensus 510 ~p~~~~~~G~~yv 522 (571)
T 2ad6_A 510 SPMTYSFKGKQYI 522 (571)
T ss_dssp CCEEEEETTEEEE
T ss_pred eeEEEEECCEEEE
Confidence 2233556775444
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.9e-05 Score=102.80 Aligned_cols=292 Identities=16% Similarity=0.122 Sum_probs=173.1
Q ss_pred CCEEEEEEC-CCcEEEEEc-cCCceeEEEeccCC-----------CEEEEEEccCCCE----EEEEeCCCcEEEEeCCCc
Q psy4869 1094 STLIATGSG-DRTVKVWGL-DYGDCHKSLLAHED-----------SVTGVTFVPKTHY----FFTTSKDGRVKQWDADNF 1156 (2435)
Q Consensus 1094 g~~L~Sgs~-Dg~I~vWd~-~t~~~~~~l~~h~~-----------~V~~v~fsp~~~~----l~s~s~Dg~V~iwD~~~~ 1156 (2435)
+..|+.++. ++.|.-+|. .+|+.+..+..... ....+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456666777 889999999 89998888754221 0123455333333 888889999999999999
Q ss_pred ceeEEEEEEEeecccccCeEE-EEEeCCCCEEEEEe------CCCcEEEEEccCCceeeEeeccCCC-------------
Q psy4869 1157 ERIVTLHFFISLYGHKLPVLS-LDMSYDSTLIATGS------GDRTVKVWGLDYGDCHKSLLAHEDS------------- 1216 (2435)
Q Consensus 1157 ~~~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~sgs------~Dg~V~iwd~~t~~~~~~~~~h~~~------------- 1216 (2435)
+.+....... ......+.+ -.+. ++ .+++++ .++.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~--~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ETVWKVENSD--IKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CEEEEEECCC--GGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CEEEeecCCC--CCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 9887754110 000001111 1111 33 566655 3799999999999988766432110
Q ss_pred ------------------------E-EEEEEeeCCCEEEEEECCC----------------cEEEEECCCCceEEEEeeC
Q psy4869 1217 ------------------------V-TGVTFVPKTHYFFTTSKDG----------------RVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1217 ------------------------V-~~i~~spd~~~lvsgs~Dg----------------~I~vwD~~~~~~v~~~~~~ 1255 (2435)
+ ..+.+.++...++.+..++ .|..+|.++++.+..++..
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 0 1345556666777766553 4444444444433332221
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEec-CCc---ceeEE
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS-PDS---KLLAV 1331 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~s-pdg---~~lav 1331 (2435)
... .||.. . ....+. +... .+| +.++.
T Consensus 298 ~~d------------------~wd~d----------------~--------------~~~p~l-~d~~~~~G~~~~~v~~ 328 (599)
T 1w6s_A 298 PHD------------------EWDYA----------------G--------------VNVMML-SEQKDKDGKARKLLTH 328 (599)
T ss_dssp TTC------------------SSCCC----------------C--------------CCCCEE-EEEECTTSCEEEEEEE
T ss_pred CCc------------------ccccc----------------C--------------CCccEE-EeccccCCcEEEEEEE
Confidence 110 01100 0 000111 1111 456 46777
Q ss_pred eecCCeEEEEEcccceEEEEecCCC------------C-Ce--------------------------EEEEEecCCCEEE
Q psy4869 1332 SLLDTTVKIFFLDTFKFFISLYGHK------------L-PV--------------------------LSLDMSYDSTLIA 1372 (2435)
Q Consensus 1332 gs~dG~V~v~d~~~~k~i~~~~~h~------------~-~V--------------------------~~la~spdg~~L~ 1372 (2435)
++.+|.++++|..+++++....... + ++ ..++++|+..+++
T Consensus 329 ~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~y 408 (599)
T 1w6s_A 329 PDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFF 408 (599)
T ss_dssp ECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEE
T ss_pred ECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEE
Confidence 8889999999999988876655211 0 11 1356777766665
Q ss_pred EE---------------------------------e------CCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEE
Q psy4869 1373 TG---------------------------------S------GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF 1413 (2435)
Q Consensus 1373 sG---------------------------------g------~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~l 1413 (2435)
+. + .+|.|.-||+.+|+.+-+.+. ..++..-...-.+.++
T Consensus 409 v~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~v 487 (599)
T 1w6s_A 409 MGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLV 487 (599)
T ss_dssp EEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEE
T ss_pred EeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEE
Confidence 43 1 347899999999998765532 1222221223356677
Q ss_pred EEEeCCCcEEEEECCCceeEEEEeec
Q psy4869 1414 FTTSKDGRVKQWDADNFERIVTLHIC 1439 (2435)
Q Consensus 1414 aSgg~Dg~V~lWd~~~~~~l~~~~~~ 1439 (2435)
+.++.||.|+.||..+.+.+.++...
T Consensus 488 f~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 488 FYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEECCCCeEEEEECCCCCEEEEeeCC
Confidence 77999999999999999999988743
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.036 Score=74.88 Aligned_cols=479 Identities=9% Similarity=0.004 Sum_probs=261.7
Q ss_pred EEEEecCCcEEEEeCCCCceeEEEeCC--CeEEEEEEecCCCEEEEE-eCCCeEEEEEccCCceeecccccccceeEEEE
Q psy4869 899 ALVSACASQVKIWNRPSLSCLRTIDTG--SYALSVCFVPGDRHVLVG-TKDGRLLIVDIGAGEILEDIPAHSQELWSVAM 975 (2435)
Q Consensus 899 ~la~g~~~~V~Iwd~~~~~~~~~l~~~--~~v~~vafspdg~~Lavg-~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~ 975 (2435)
+|+.+....|+..++.+......++.. ..+.+|+|.+.+..|... ..++.|..+++..+.....+.........+++
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAv 87 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAV 87 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence 555566778889998876655544432 367799999977777754 46889999998755433223222233456666
Q ss_pred ecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEE
Q psy4869 976 LPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL 1055 (2435)
Q Consensus 976 s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~L 1055 (2435)
...+ +..+++-...+.|.+.+++.... .++. ...-.....++++|...+|
T Consensus 88 D~~~---------~~LY~tD~~~~~I~v~~~dG~~~---------------~~l~------~~~l~~P~~iavdp~~G~l 137 (628)
T 4a0p_A 88 DWLG---------KNLYWADTGTNRIEVSKLDGQHR---------------QVLV------WKDLDSPRALALDPAEGFM 137 (628)
T ss_dssp ETTT---------TEEEEEETTTTEEEEEETTSTTC---------------EEEE------CSSCCCEEEEEEETTTTEE
T ss_pred EeCC---------CEEEEEECCCCEEEEEecCCCcE---------------EEEE------eCCCCCcccEEEccCCCeE
Confidence 5432 23555555567788877653210 0000 0112457899999987788
Q ss_pred EEEEC--CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCceeEEEeccCCCEEEEEE
Q psy4869 1056 AVSLL--DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHKSLLAHEDSVTGVTF 1132 (2435)
Q Consensus 1056 avg~~--dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~-Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~f 1132 (2435)
+.... .+.|...+++.......+. .-.....|++++++..|+.+.. .+.|...+++.... ..+.........+++
T Consensus 138 Y~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav 215 (628)
T 4a0p_A 138 YWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQ 215 (628)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEE
T ss_pred EEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEE
Confidence 87764 4677777776544333333 3456789999998777776654 67888999865433 344433445567777
Q ss_pred ccCCCEEEEEe-CCCcEEEEeCCCcceeEEEEE-------EEeeccc-----------ccCeEEEEEe-C---------C
Q psy4869 1133 VPKTHYFFTTS-KDGRVKQWDADNFERIVTLHF-------FISLYGH-----------KLPVLSLDMS-Y---------D 1183 (2435)
Q Consensus 1133 sp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~-------~~~~~~h-----------~~~V~~l~~s-~---------d 1183 (2435)
.. + .|+.+. ..+.|...|..+++....+.. +...... .+....+|+. + .
T Consensus 216 ~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~ 293 (628)
T 4a0p_A 216 YQ-D-YIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPA 293 (628)
T ss_dssp ET-T-EEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECST
T ss_pred EC-C-EEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCC
Confidence 64 3 455444 478888888766554433321 0000000 0111112221 1 1
Q ss_pred C--------------CEEEEEeCCCcEEEEEccCCcee-eEee-ccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCC
Q psy4869 1184 S--------------TLIATGSGDRTVKVWGLDYGDCH-KSLL-AHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNF 1246 (2435)
Q Consensus 1184 g--------------~~l~sgs~Dg~V~iwd~~t~~~~-~~~~-~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~ 1246 (2435)
| .+|+.+ ....|+-..+...... ..+. ..-..+..|.|.+.++.|+.+. ..+.|..+++...
T Consensus 294 g~~l~~d~~~C~~~~~~Ll~s-~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~ 372 (628)
T 4a0p_A 294 HYSLNADNRTCSAPTTFLLFS-QKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGS 372 (628)
T ss_dssp TCEECTTSSCEECCSSEEEEE-ETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEecccCCcCccccceeeee-ccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCC
Confidence 1 112221 1233444444322110 1111 1224578899998666666555 5677888887643
Q ss_pred ceEEEEee-----------CCcccccC-ceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccccc
Q psy4869 1247 ERIVTLHF-----------NPNVYLPL-QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314 (2435)
Q Consensus 1247 ~~v~~~~~-----------~~~~~~~~-~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1314 (2435)
.....+.. ....+... ....++....+.|.+.++.-.. ...+.. .--
T Consensus 373 ~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~------------------~~~l~~---~~l 431 (628)
T 4a0p_A 373 QGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRS------------------VGVVLK---GEQ 431 (628)
T ss_dssp SCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCE------------------EEEEEE---CTT
T ss_pred CceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCe------------------EEEEEe---CCC
Confidence 32222211 01111111 2233444455666666553100 000000 012
Q ss_pred ccEEEEEecC-CcceeEEeecCC--eEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCce
Q psy4869 1315 EQVLCARVSP-DSKLLAVSLLDT--TVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1315 ~~i~~ia~sp-dg~~lavgs~dG--~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~-Dg~V~iwdl~~gk~ 1390 (2435)
...+.|++.| .|..+.+-.... +|...+++-..........-.....|+++++++.|+.+.. .+.|..++++....
T Consensus 432 ~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r 511 (628)
T 4a0p_A 432 DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR 511 (628)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce
Confidence 4578899999 566666544333 5666666543332223333456789999998887777765 57899999865432
Q ss_pred EEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEE
Q psy4869 1391 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434 (2435)
Q Consensus 1391 ~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~ 1434 (2435)
............+|+... +.++.+=.....|...|..+.+...
T Consensus 512 ~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 512 IVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp EEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCE
T ss_pred EEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcE
Confidence 222222233456777754 4555555555677777766544333
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.33 E-value=0.063 Score=77.22 Aligned_cols=485 Identities=14% Similarity=0.138 Sum_probs=259.0
Q ss_pred CCceEEEEecCCCcEEEEec-CCcEEEEeCCCC--------ceeEEEeCCCeEEEEEEecCC----CEEE-E-E-eCCCe
Q psy4869 885 HSEVRALAFSSDNLALVSAC-ASQVKIWNRPSL--------SCLRTIDTGSYALSVCFVPGD----RHVL-V-G-TKDGR 948 (2435)
Q Consensus 885 ~~~V~~la~s~dg~~la~g~-~~~V~Iwd~~~~--------~~~~~l~~~~~v~~vafspdg----~~La-v-g-~~dg~ 948 (2435)
....+||++-.+| +|+.|. .|.=.+|.+... +.+..+..-.++..++..... ..|+ + | +.+|.
T Consensus 326 ~~~~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gs 404 (1158)
T 3ei3_A 326 TSIAECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGS 404 (1158)
T ss_dssp CSCCSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCE
T ss_pred ccCccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCe
Confidence 4456788888777 555555 466666665533 334566666677766665421 2444 3 2 25788
Q ss_pred EEEEEccCC-cee--ecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccc
Q psy4869 949 LLIVDIGAG-EIL--EDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRS 1025 (2435)
Q Consensus 949 V~vwd~~sg-~~v--~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~ 1025 (2435)
|++..-.=+ +.. ..++ ....+|.+....+. ....+|+..-.+.+ +++.+..... .++.
T Consensus 405 L~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~-------~~~~yLvlS~~~~T-~Vl~i~~e~v--------eev~-- 465 (1158)
T 3ei3_A 405 LRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNR-------ETDDTLVLSFVGQT-RVLMLNGEEV--------EETE-- 465 (1158)
T ss_dssp EEEEEESBCEEEEEEECCC-SCCEEEEECCCSSC-------SSCCEEEEEETTEE-EEEEEETTEE--------EEEC--
T ss_pred EEEEecCCCEEEEEeecCC-CccEEEEEeecCCC-------CCCCEEEEECCCCe-EEEEEeCCcc--------cccc--
Confidence 887542111 111 1233 23577777654221 11235555555444 5555531110 0110
Q ss_pred cceeeeeecccccc-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecC-CcCEEEEEEcCCCCEEEEEECC
Q psy4869 1026 HKVLSLLHTRTLKL-EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGH-KLPVLSLDMSYDSTLIATGSGD 1103 (2435)
Q Consensus 1026 ~~~l~~~~~~~~~~-~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h-~~~V~sl~~spdg~~L~Sgs~D 1103 (2435)
..-+.. ...+.+-.+ .++ .++=.. ...|++++.+....+..+... ...|...+.+. .+++.+. +
T Consensus 466 --------~~gf~~~~~TL~~~~l-~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g 531 (1158)
T 3ei3_A 466 --------LMGFVDDQQTFFCGNV-AHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-G 531 (1158)
T ss_dssp --------CTTCCSSSCEEEEEEE-TTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-T
T ss_pred --------cccccCCCCcEEEEEc-CCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-C
Confidence 000111 112222222 233 333222 455888887666666666533 33566666543 4566665 6
Q ss_pred CcEEEEEccCCceeEEE-eccCCCEEEEEEccC------CCEEEEEeC-CCcEEEEeCCCcceeEEEEEEEeecccccCe
Q psy4869 1104 RTVKVWGLDYGDCHKSL-LAHEDSVTGVTFVPK------THYFFTTSK-DGRVKQWDADNFERIVTLHFFISLYGHKLPV 1175 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l-~~h~~~V~~v~fsp~------~~~l~s~s~-Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V 1175 (2435)
+.|.+++++.++..... ..-...|.++++.+. +.++++|.+ |+.|+++++.+.+.+.... + ......
T Consensus 532 ~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~----L-~~~~~p 606 (1158)
T 3ei3_A 532 RALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM----L-GGEIIP 606 (1158)
T ss_dssp TEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE----C-CSSCCE
T ss_pred CEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE----C-CCCCCC
Confidence 78888888766432211 124568999999863 468999998 9999999998765543322 1 111233
Q ss_pred EEEEEe--CCCCEEEEEeCCCcEEEEEc--cCCceeeE--eeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceE
Q psy4869 1176 LSLDMS--YDSTLIATGSGDRTVKVWGL--DYGDCHKS--LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1249 (2435)
Q Consensus 1176 ~~l~~s--~dg~~l~sgs~Dg~V~iwd~--~t~~~~~~--~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v 1249 (2435)
.++.+. ....+|..|-.||.+.-+.+ .+|+.... ..-...++.=..+...+..-+-+..++-..++--+. +..
T Consensus 607 ~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l~ 685 (1158)
T 3ei3_A 607 RSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH-KLV 685 (1158)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSS-SEE
T ss_pred cEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCC-ceE
Confidence 344333 23457888989998765554 44553322 112234444333433333333333344444443221 111
Q ss_pred EEEeeCCc------ccccC--ceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEE
Q psy4869 1250 VTLHFNPN------VYLPL--QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCAR 1321 (2435)
Q Consensus 1250 ~~~~~~~~------~~~~~--~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia 1321 (2435)
.. ..... .|... ..-++ ...++.++|..+... ..+..+..+++...+.++
T Consensus 686 ~s-~l~~~~v~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~--------------------~~~~~~~ipL~~Tprri~ 743 (1158)
T 3ei3_A 686 FS-NVNLKEVNYMCPLNSDGYPDSLA-LANNSTLTIGTIDEI--------------------QKLHIRTVPLYESPRKIC 743 (1158)
T ss_dssp EE-EBSSSCCCEEEEECCSSSTTEEE-EECSSCEEEEEECCS--------------------SSEEEEEEECSSEEEEEE
T ss_pred Ee-ccChHHhceEeccCcccCCCcEE-EEcCCceEEEEeccc--------------------CCeeEEEEeCCCCceEEE
Confidence 11 11100 11110 11233 334556888876421 123455667788888888
Q ss_pred ecCCcceeEEeecC-------------------------------------------------CeEEEEEcccceEEEEe
Q psy4869 1322 VSPDSKLLAVSLLD-------------------------------------------------TTVKIFFLDTFKFFISL 1352 (2435)
Q Consensus 1322 ~spdg~~lavgs~d-------------------------------------------------G~V~v~d~~~~k~i~~~ 1352 (2435)
++|+.+.++++..+ +.++++|..+++.+..+
T Consensus 744 y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~ 823 (1158)
T 3ei3_A 744 YQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAH 823 (1158)
T ss_dssp EEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEE
T ss_pred EcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEE
Confidence 88888777765421 23677777777776666
Q ss_pred cCCC-CCeEEEE---EecC-CCEEEEEe----------CCCcEEEEeCCCCceEEEec-ccccceEEEEEeeCCCEEEEE
Q psy4869 1353 YGHK-LPVLSLD---MSYD-STLIATGS----------GDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVPKTHYFFTT 1416 (2435)
Q Consensus 1353 ~~h~-~~V~~la---~spd-g~~L~sGg----------~Dg~V~iwdl~~gk~~~~~~-~h~~~V~~laf~P~~~~laSg 1416 (2435)
.-.. ..+.+++ |..+ ..+|+.|. ..|.|++|++..+++....+ ...++|++|+-- +|++++..
T Consensus 824 ~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i 902 (1158)
T 3ei3_A 824 QFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI 902 (1158)
T ss_dssp ECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE
T ss_pred eCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc
Confidence 5322 2344544 3322 46888886 34889999998665433222 346789998843 45555544
Q ss_pred eCCCcEEEEECCCceeEE
Q psy4869 1417 SKDGRVKQWDADNFERIV 1434 (2435)
Q Consensus 1417 g~Dg~V~lWd~~~~~~l~ 1434 (2435)
| ..|++||+...+.++
T Consensus 903 g--~~l~vy~l~~~~~L~ 918 (1158)
T 3ei3_A 903 N--STVRLYEWTTEKELR 918 (1158)
T ss_dssp T--TEEEEEEECTTSCEE
T ss_pred C--CEEEEEECCCCceEE
Confidence 3 689999999766554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00039 Score=83.71 Aligned_cols=250 Identities=12% Similarity=0.000 Sum_probs=152.5
Q ss_pred cEEEEecCCcEEEEeCCCCcee-----EEEe-CCCeEEEEEEecCCCEEEEEe-CCCeEEEEEccCCceeecccccccce
Q psy4869 898 LALVSACASQVKIWNRPSLSCL-----RTID-TGSYALSVCFVPGDRHVLVGT-KDGRLLIVDIGAGEILEDIPAHSQEL 970 (2435)
Q Consensus 898 ~~la~g~~~~V~Iwd~~~~~~~-----~~l~-~~~~v~~vafspdg~~Lavg~-~dg~V~vwd~~sg~~v~~~~~h~~~V 970 (2435)
.+|..+..+.|..+++...... ..+. ....+.+++++++++.|.+.. .++.|.++|+..+.....+.......
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4555555567888887754321 1122 224567899999877776654 57899999987655433333222456
Q ss_pred eEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcC
Q psy4869 971 WSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP 1050 (2435)
Q Consensus 971 ~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp 1050 (2435)
..+++.+++ +..+++-...+.|.+++++.... ..+ .. ........++++|
T Consensus 82 ~~ia~d~~~---------~~lyv~d~~~~~I~~~~~~g~~~---------------~~~--~~----~~~~~P~~i~vd~ 131 (267)
T 1npe_A 82 EGIALDHLG---------RTIFWTDSQLDRIEVAKMDGTQR---------------RVL--FD----TGLVNPRGIVTDP 131 (267)
T ss_dssp EEEEEETTT---------TEEEEEETTTTEEEEEETTSCSC---------------EEE--EC----SSCSSEEEEEEET
T ss_pred cEEEEEecC---------CeEEEEECCCCEEEEEEcCCCCE---------------EEE--EE----CCCCCccEEEEee
Confidence 788888753 23555555678888888752110 000 00 0114578999999
Q ss_pred CCCEEEEEECC---CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEeccCCC
Q psy4869 1051 DSKLLAVSLLD---TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHEDS 1126 (2435)
Q Consensus 1051 dg~~Lavg~~d---g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~h~~~ 1126 (2435)
++..|+++... +.|..++.+.................+++++++..|+.+. ..+.|.+++.........+.. ...
T Consensus 132 ~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~ 210 (267)
T 1npe_A 132 VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQY 210 (267)
T ss_dssp TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCS
T ss_pred CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCC
Confidence 87777777643 6788888764332222222334578999999877666555 467899999875543333332 233
Q ss_pred EEEEEEccCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCC
Q psy4869 1127 VTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDST 1185 (2435)
Q Consensus 1127 V~~v~fsp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 1185 (2435)
...++.. +..|+.+. .++.|..+|..+++....+. .+.......+++.|++.
T Consensus 211 P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~-----~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 211 PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH-----PHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC-----CSSCCCCCCEEEECSCC
T ss_pred ceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc-----cccccccceeeecCccC
Confidence 4566654 45555555 56899999998887666553 11122456677777653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00019 Score=96.52 Aligned_cols=343 Identities=15% Similarity=0.047 Sum_probs=190.1
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCCcC---------EEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec
Q psy4869 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP---------VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1122 (2435)
Q Consensus 1052 g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~---------V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~ 1122 (2435)
+..|++++.++.|..+|..+++.+-.+...... -..+++ .+..++.++.|+.|..+|.++|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 455666666455899999999988777543211 011222 356788889999999999999999887754
Q ss_pred cCC----CEE-EEEEcc---CCC-EEEEEe------CCCcEEEEeCCCcceeEEEEEEE----eec----------c---
Q psy4869 1123 HED----SVT-GVTFVP---KTH-YFFTTS------KDGRVKQWDADNFERIVTLHFFI----SLY----------G--- 1170 (2435)
Q Consensus 1123 h~~----~V~-~v~fsp---~~~-~l~s~s------~Dg~V~iwD~~~~~~~~~~~~~~----~~~----------~--- 1170 (2435)
... .+. .-.... +++ .+++++ .++.|+.+|..+++.+...+... ... +
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 321 111 111111 123 566654 37899999999999887653210 000 0
Q ss_pred ------------------cccCeEEEEEeCCCCEEEEEeC--------------------C----CcEEEEEccCCceee
Q psy4869 1171 ------------------HKLPVLSLDMSYDSTLIATGSG--------------------D----RTVKVWGLDYGDCHK 1208 (2435)
Q Consensus 1171 ------------------h~~~V~~l~~s~dg~~l~sgs~--------------------D----g~V~iwd~~t~~~~~ 1208 (2435)
....-..+++.++..+++.+.. | +.|..+|.++|+.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 0000123566777778887763 2 589999999999887
Q ss_pred Eeec--cCC----CEEE-EEEe---eCC---CEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEEC--CC
Q psy4869 1209 SLLA--HED----SVTG-VTFV---PKT---HYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGG--DK 1273 (2435)
Q Consensus 1209 ~~~~--h~~----~V~~-i~~s---pd~---~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~--d~ 1273 (2435)
.++. |.. .+.. +.+. .++ ..++.++.+|.+.++|.++++.+.........-. +.+-. .+
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~------~~~~~~~~g 379 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW------ASHIDLKTG 379 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS------EEEECTTTC
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc------cccccccCC
Confidence 7653 321 1111 1122 356 3688889999999999999999887766432100 00000 00
Q ss_pred eEEEEEcccccc-cccccccccccccccceeeeeecccccc-cccEEEEEecCCcceeEEe-------------------
Q psy4869 1274 SVKLWQLELVSV-NREADEETKDVSRSHKVLSLLHTRTLKL-EEQVLCARVSPDSKLLAVS------------------- 1332 (2435)
Q Consensus 1274 ~v~iwdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ia~spdg~~lavg------------------- 1332 (2435)
... .+...... ..+... ........| ... ......++++|+...+.+.
T Consensus 380 ~p~-~~~~~~~~~~~~~~~-----~~~~~~~~P-----~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 380 RPV-EREGQRPPLPEPGQK-----HGKAVEVSP-----PFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CEE-ECTTCSCCCCCTTCS-----SCCCEEESS-----CTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred CEe-EccccCCcccccccc-----CCCceEECc-----CCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 000 00000000 000000 000000000 000 0001122333333332221
Q ss_pred --------------ecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccc
Q psy4869 1333 --------------LLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE 1398 (2435)
Q Consensus 1333 --------------s~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~ 1398 (2435)
..+|.|..||+.+++.+.....+. ++..-.....+.+|+.|+.|+.++.||.++|+++-+++...
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 136889999999999877666332 22111222357788889999999999999999998776443
Q ss_pred cc-eEEEEEeeCCCEEE
Q psy4869 1399 DS-VTGVTFVPKTHYFF 1414 (2435)
Q Consensus 1399 ~~-V~~laf~P~~~~la 1414 (2435)
.. ..-+.|..++..++
T Consensus 528 g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 528 GIVSPPITWEQDGEQYL 544 (582)
T ss_dssp CCCSCCEEEEETTEEEE
T ss_pred CcccCceEEEECCEEEE
Confidence 21 12356667775443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.049 Score=73.55 Aligned_cols=229 Identities=9% Similarity=0.022 Sum_probs=145.1
Q ss_pred CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCceEEEEeccCccccccCcccCCC
Q psy4869 382 YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460 (2435)
Q Consensus 382 ~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~ 460 (2435)
....|+..++.+...........-..+..|+|++++..|+.+ ..++.|+.++++.......+.........+++.+.+.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 556788888865422211111223568899999876666654 4578899999875544444433334456677777777
Q ss_pred eEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCCEEEE
Q psy4869 461 LLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDTVTGL 537 (2435)
Q Consensus 461 ~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~V~~i 537 (2435)
.++++-...+.|.+.++......... ..-.....++++|...+|+.... .+.|...++........+ ..-....+|
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~Gl 171 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGL 171 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEE
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceE
Confidence 88888888899999998765433333 34456789999997777777653 578888888655433323 344567899
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEE
Q psy4869 538 SLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIA 616 (2435)
Q Consensus 538 ~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~ 616 (2435)
++++++..|+.+. ..+.|..+|+... .+ ..+.... .....+++.. ++.+++-...+.|...|..+++..
T Consensus 172 alD~~~~~LY~aD~~~~~I~~~d~dG~---~~--~v~~~~l----~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 172 TIDYAKRRLYWTDLDTNLIESSNMLGL---NR--EVIADDL----PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC---SC--EEEEECC----SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEccccCEEEEEECCCCEEEEEcCCCC---ce--EEeeccC----CCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 9999877776655 5778999998632 12 1222111 1335566653 444445455778888887777655
Q ss_pred EEecC
Q psy4869 617 YKLPG 621 (2435)
Q Consensus 617 ~~l~~ 621 (2435)
..+..
T Consensus 242 ~~l~~ 246 (628)
T 4a0p_A 242 TIIQG 246 (628)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 54433
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.6e-05 Score=92.76 Aligned_cols=198 Identities=9% Similarity=-0.006 Sum_probs=139.7
Q ss_pred CeeEEEEccCCCEEEEEeC--CCeEEEEECCCCceEEEEeccCc-cccccCcccCCCeEEEEEeCCCeEEEEeCCCCcce
Q psy4869 407 AVMDLKFSTDGCHIFTCST--DQTLAVWDLEKGQRIKKMKGHST-FVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQA 483 (2435)
Q Consensus 407 ~V~~l~~s~dg~~L~s~s~--Dg~I~vwd~~tg~~v~~l~~h~~-~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~ 483 (2435)
....++|++|+..+++.+. ++.|+++|+.+++.+..+.-... ....+.+ .+..+.++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEecCCEEEEEECCCCcEE
Confidence 3689999998644444443 57999999999999988763221 1112332 35577788888999999999999888
Q ss_pred EeecCc-ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCC-----CCEEEEEEcCCCCEEEEEECCCcEEE
Q psy4869 484 VSMNNT-YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS-----DTVTGLSLSPDGSYILSNAMDNTVRI 557 (2435)
Q Consensus 484 ~~~~~~-~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~-----~~V~~i~~spdg~~las~s~Dg~I~l 557 (2435)
..+... .. ...+++||+.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|...+....++.|.+
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 887543 22 23456688888888888999999999999888875321 246788888 7755555546889999
Q ss_pred EEcCCCCCCCceEEEEeCcc---------cccccCeEEEEEcCCCC-EEEEecCCCeEEEEECCCC
Q psy4869 558 WDIRPYVPGERCVKVMSGHQ---------HNFEKNLLRCAWSVSGL-YVTAGSADKCVYIWDTTTR 613 (2435)
Q Consensus 558 Wdl~~~~~~~~~v~~~~~h~---------~~~~~~i~~v~~spdg~-~Lasgs~Dg~V~iwd~~s~ 613 (2435)
.|..+ .+.+..+.-.. .........++|+|+++ +++++...+.|.+.++...
T Consensus 177 ID~~t----g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 177 ISAKD----GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EETTT----CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EECCC----CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99984 56666665321 01113568899999985 5566667888888887543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.26 E-value=0.037 Score=77.21 Aligned_cols=482 Identities=10% Similarity=0.053 Sum_probs=258.7
Q ss_pred CCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEE--eCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeec
Q psy4869 885 HSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTI--DTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILED 962 (2435)
Q Consensus 885 ~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l--~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~ 962 (2435)
+..|.||.-.++|..- .|..+.+..||-...+..... .....+.++....+ ..|.+|+.+| |..||..+++....
T Consensus 21 ~n~V~~I~qD~~G~lW-igT~~GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~-g~lWigT~~G-l~~yd~~~~~f~~~ 97 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW-IGSNKGLFSYDGYSTQQHFTYGENNNTRIYCGVIIDN-TYLYMGTDNG-ILVYNYRADRYEQP 97 (758)
T ss_dssp CCCEEEEEECTTSCEE-EEESSCEEEECSSCEEECSCTTSTTSSCEEEEEEETT-TEEEEEETTE-EEEEETTTTEECCC
T ss_pred cceEEEEEECCCCCEE-EEECCCccccCCCceEEEEccCCCCCceEEEEEEcCC-CcEEEEeCCC-eEEEeCCCCEEECc
Confidence 4579999988888544 445556777774332111000 12345777776655 4677888665 78999888765432
Q ss_pred ccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCC
Q psy4869 963 IPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1042 (2435)
Q Consensus 963 ~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1042 (2435)
.......|.++.. .++ .|..+..+ -|..++.....+.. ............
T Consensus 98 ~~~~~~~i~~i~~-~~g-----------~lWigt~~-Gl~~~~~~~~~~~~-----------------~~~~~~~l~~~~ 147 (758)
T 3ott_A 98 ETDFPTDVRTMAL-QGD-----------TLWLGALN-GLYTYQLQSRKLTS-----------------FDTRRNGLPNNT 147 (758)
T ss_dssp SCCCCSCEEEEEE-ETT-----------EEEEEETT-EEEEEETTTCCEEE-----------------ECHHHHCCSCSC
T ss_pred ccCCCceEEEEEe-cCC-----------cEEEEcCC-cceeEeCCCCeEEE-----------------eccCCCCcCCCe
Confidence 1112234666543 232 45556555 46666643211100 000000012346
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEE-ecC----CcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCcee
Q psy4869 1043 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL-YGH----KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1117 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l-~~h----~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~ 1117 (2435)
|.++....+|.+.+ |..+ -+..|+..+.+..... ... ...|.++....++..|..|.. +-|..+|..+++..
T Consensus 148 i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~ 224 (758)
T 3ott_A 148 IYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK 224 (758)
T ss_dssp EEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE
T ss_pred EEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE
Confidence 88888888887665 5544 4778887766543221 111 224888888777776665664 45888888766543
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEe--ecccccCeEEEEEeCCCCEEEEEeCCCc
Q psy4869 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFIS--LYGHKLPVLSLDMSYDSTLIATGSGDRT 1195 (2435)
Q Consensus 1118 ~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~sgs~Dg~ 1195 (2435)
.........|.++....++.+.+ |.. +-+.+++..+... ..+..... ..-....|.++....+|. |..|+..|
T Consensus 225 ~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G- 299 (758)
T 3ott_A 225 QTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG- 299 (758)
T ss_dssp EEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-
T ss_pred eccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-
Confidence 22111234578888877776554 444 4588888765432 11110000 001234688888877765 45555556
Q ss_pred EEEEEccCCceeeEee-------ccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCc--eEEEEeeCC-------c--
Q psy4869 1196 VKVWGLDYGDCHKSLL-------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE--RIVTLHFNP-------N-- 1257 (2435)
Q Consensus 1196 V~iwd~~t~~~~~~~~-------~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~--~v~~~~~~~-------~-- 1257 (2435)
+.++... .. ...+. .....|.++.-..++. |..|+.+| +..++..... ....+.... .
T Consensus 300 l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 375 (758)
T 3ott_A 300 ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRI 375 (758)
T ss_dssp EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCE
T ss_pred ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCC-EEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCce
Confidence 5544332 11 11111 1134688888777776 45556554 6666654321 111111100 0
Q ss_pred --ccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC
Q psy4869 1258 --VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD 1335 (2435)
Q Consensus 1258 --~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d 1335 (2435)
.+......|..|+ ++-+..|+....... . ..............|.++....+|+ |-+|+..
T Consensus 376 ~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~ 438 (758)
T 3ott_A 376 RHIYEDKEQQLWIAT-DGSINRYDYATRQFI-H--------------YNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCL 438 (758)
T ss_dssp EEEEECTTSCEEEEE-TTEEEEEETTTTEEE-E--------------EEEECCC--CBSSSEEEEEECTTSE-EEEEESS
T ss_pred EEEEECCCCCEEEEe-CCcHhhcCcCCCcEE-E--------------eecCCCcCCCCCceEEEEEEcCCCC-EEEEECC
Confidence 0111223355565 456777876422110 0 0000000000134578888777765 5667777
Q ss_pred CeEEEEEcccc-----eEE---EEec---C-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecc---cccc
Q psy4869 1336 TTVKIFFLDTF-----KFF---ISLY---G-HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA---HEDS 1400 (2435)
Q Consensus 1336 G~V~v~d~~~~-----k~i---~~~~---~-h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~---h~~~ 1400 (2435)
+.|.+|+.++. +.+ ..+. + ....|.++...++|++.+.++..+-|..+|..+++....... ....
T Consensus 439 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~ 518 (758)
T 3ott_A 439 GGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKS 518 (758)
T ss_dssp SCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGC
T ss_pred CceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcc
Confidence 77888886531 111 1111 1 123488999999999777444445578889888765543211 1346
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1401 VTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1401 V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
++++..+.++.+.+.. . +.|..+|..+.
T Consensus 519 ~~~i~~d~~g~lWigt-~-~Gl~~~~~~~~ 546 (758)
T 3ott_A 519 PNYLLCDEDGLLWVGF-H-GGVMRINPKDE 546 (758)
T ss_dssp EEEEEECTTSCEEEEE-T-TEEEEECC--C
T ss_pred cceEEECCCCCEEEEe-c-CceEEEecCCC
Confidence 8899988888777644 3 45888887653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.25 E-value=4.9e-05 Score=89.20 Aligned_cols=183 Identities=10% Similarity=0.107 Sum_probs=126.2
Q ss_pred cccCcccCCCeEEEEEeCCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEEE
Q psy4869 451 NSCDPVRRGQLLIASGSDDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRTNSVVQKL 527 (2435)
Q Consensus 451 ~sv~~~~~~~~llasgs~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s~~~v~~l 527 (2435)
..+.|. + ..++.+.+.+| .|+++|+.+++.+.............+.++++.|+... .++.+.+||..+.+.+.++
T Consensus 46 qGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 46 EGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred ceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 456665 3 36777777766 89999999999988876544443333333456666654 5889999999999999998
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc-cccCeEEEEEcCCCCEEEEecCCCeEE
Q psy4869 528 RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN-FEKNLLRCAWSVSGLYVTAGSADKCVY 606 (2435)
Q Consensus 528 ~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~-~~~~i~~v~~spdg~~Lasgs~Dg~V~ 606 (2435)
..... ...+.+|+..|+.+..+++|.++|..+ .+.+..+...... .-..+..+.|. +|+..+..-.++.|.
T Consensus 124 ~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T----~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 124 NYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPES----LTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp ECSSC---CCCEEECSSCEEECCSSSEEEEECTTT----CSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred ECCCC---ceEEecCCCEEEEECCCCeEEEEcCCC----CeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence 75332 233446788777777788899999874 3444444332111 01234456776 777665555688999
Q ss_pred EEECCCCcEEEEecCC------------CCCeeEEEEcCCCCEEEEEEC
Q psy4869 607 IWDTTTRRIAYKLPGH------------NGSVNDVQFHPKEPIIMSASS 643 (2435)
Q Consensus 607 iwd~~s~~~~~~l~~h------------~~~V~~l~fspd~~~Lasgs~ 643 (2435)
+.|.++++.+..+.-. ....+.|+|+|+++.|+..+.
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999998887542 135689999999887777663
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00015 Score=90.23 Aligned_cols=239 Identities=12% Similarity=0.091 Sum_probs=146.1
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeC------------------CCCCeeEEEEccCCCEEEEEeCC
Q psy4869 365 IFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSG------------------HTGAVMDLKFSTDGCHIFTCSTD 426 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~------------------h~~~V~~l~~s~dg~~L~s~s~D 426 (2435)
..+++++++|+++.++..++.|..||..+.......... ....+..|++.+++..|+.+...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 345788999997888889999999987653222111100 11357899999733456666555
Q ss_pred CeEEEEECCCCceEEEEec-----cCccccccCccc-CCCeEEEEEe----------------CCCeEEEEeCCCCcceE
Q psy4869 427 QTLAVWDLEKGQRIKKMKG-----HSTFVNSCDPVR-RGQLLIASGS----------------DDCTVKVWDPRKKNQAV 484 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~-----h~~~v~sv~~~~-~~~~llasgs----------------~Dg~I~vwD~~~~~~~~ 484 (2435)
+.|..+|..+++. ..+.. .....+.+.+.+ ++..++.... .++.|..||..+++...
T Consensus 101 ~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 101 YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 6688888765542 22211 112356677778 7754444322 13678888887665433
Q ss_pred eecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCc--EEEEEecCCCCEEEEEEcCCCCEEEEEEC----------
Q psy4869 485 SMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRTNS--VVQKLRGHSDTVTGLSLSPDGSYILSNAM---------- 551 (2435)
Q Consensus 485 ~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s~~--~v~~l~~h~~~V~~i~~spdg~~las~s~---------- 551 (2435)
........+.++++|+|++|+++. ..+.|++||+.... ....+....+ ...|++.++|++.++...
T Consensus 180 ~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~ 258 (322)
T 2fp8_A 180 LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRV 258 (322)
T ss_dssp EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCE
T ss_pred eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCC
Confidence 322233456799999999777764 56899999987521 1122211223 788999999987766544
Q ss_pred CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 552 DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 552 Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
.+.|..+|.. ++.+..+.......-..+..+++ .+|+++++...++.|.++++.
T Consensus 259 ~~~v~~~d~~-----G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 259 DPKGIKFDEF-----GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEEEECTT-----SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred ccEEEEECCC-----CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 3567777743 45555554322111123455555 466666666677889888875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00021 Score=85.02 Aligned_cols=193 Identities=9% Similarity=0.044 Sum_probs=134.5
Q ss_pred cEEEEEECCCCCEEEEEeC--CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCceE
Q psy4869 364 EIFCSKYHPDGQYIASSGY--DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~--Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~~v 440 (2435)
....+.|+++|.++++.+. ++.|+++|..++........+.......+++. ++.|+.+. .++.+.++|..+++.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3578999998765555543 57999999986543322211222222345554 55666655 5789999999999999
Q ss_pred EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCc------ccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 441 KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT------YQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 441 ~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~------~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
.++... .-....+.+++..++++- .++.|.++|..+.+....+... ..++.+.|. +|+..+....++.|.
T Consensus 100 ~~i~~g--~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 100 KNFTHQ--MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIA 175 (266)
T ss_dssp EEEECC--SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEECC--CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEE
Confidence 988643 111233566777777765 5889999999998877776432 136788888 675444444679999
Q ss_pred EEECCCCcEEEEEecC-------------CCCEEEEEEcCCCCEEE-EEECCCcEEEEEcCC
Q psy4869 515 MWDLRTNSVVQKLRGH-------------SDTVTGLSLSPDGSYIL-SNAMDNTVRIWDIRP 562 (2435)
Q Consensus 515 lwD~~s~~~v~~l~~h-------------~~~V~~i~~spdg~~la-s~s~Dg~I~lWdl~~ 562 (2435)
+.|..+++.+..+.-. ....++|+|+|+++.|+ ++...+++...++..
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 9999999999888531 13669999999987655 555788898888864
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00011 Score=86.07 Aligned_cols=184 Identities=13% Similarity=0.123 Sum_probs=128.2
Q ss_pred EEEEEEcCCCCEEEEEECCC--cEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEE
Q psy4869 1043 VLCARVSPDSKLLAVSLLDT--TVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKS 1119 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~~dg--~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~ 1119 (2435)
...+.|+ ++.++.+.+.+| .|+++|.++++.+..+.-.. ........++++.|+... .++.+.+||.++.+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 3678898 665555555555 89999999999998886432 333322233455555554 588999999999999999
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccc-cCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy4869 1120 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK-LPVLSLDMSYDSTLIATGSGDRTVKV 1198 (2435)
Q Consensus 1120 l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l~sgs~Dg~V~i 1198 (2435)
+...... ..++ ++++.|+.+..++.|.++|..+.+....+.... .+.. ..++.+.|. +|...+..-.++.|.+
T Consensus 123 i~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~--~g~~~~~lNELe~~-~G~lyan~w~~~~I~v 196 (262)
T 3nol_A 123 FNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA--HGEELPELNELEWV-DGEIFANVWQTNKIVR 196 (262)
T ss_dssp EECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEE--TTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc--CCccccccceeEEE-CCEEEEEEccCCeEEE
Confidence 8753322 3444 467777777778899999999988877765211 1111 345667877 6654444446889999
Q ss_pred EEccCCceeeEeecc------------CCCEEEEEEeeCCCEEEEEEC
Q psy4869 1199 WGLDYGDCHKSLLAH------------EDSVTGVTFVPKTHYFFTTSK 1234 (2435)
Q Consensus 1199 wd~~t~~~~~~~~~h------------~~~V~~i~~spd~~~lvsgs~ 1234 (2435)
.|.++++.+..+... .+-.+.|+|+|+++.|++.+.
T Consensus 197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999988777531 135689999998888777763
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00045 Score=85.79 Aligned_cols=236 Identities=11% Similarity=0.039 Sum_probs=149.1
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEecc--------------------CccccccCcccCCCeEEEE
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGH--------------------STFVNSCDPVRRGQLLIAS 465 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h--------------------~~~v~sv~~~~~~~~llas 465 (2435)
....+++|++++++++++..++.|..||..+++.. .+... ......+++.+.+..++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 45677889999887888888999999998765433 22210 1234556666533344444
Q ss_pred EeCCCeEEEEeCCCCcceEeec-----CcccEEEEEECC-CCCEEEEEec-----------------CCeEEEEECCCCc
Q psy4869 466 GSDDCTVKVWDPRKKNQAVSMN-----NTYQVTSVAFND-TAECVLTGGI-----------------DNDIKMWDLRTNS 522 (2435)
Q Consensus 466 gs~Dg~I~vwD~~~~~~~~~~~-----~~~~v~sv~~sp-~g~~l~sgs~-----------------dg~V~lwD~~s~~ 522 (2435)
...+.|..+|...+....... .....+.+++.+ +|++.++-.. +|.|..||..+++
T Consensus 98 -d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 -DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp -ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred -ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 333458888877553322111 113478899999 9986665432 3789999988776
Q ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 523 VVQKLRGHSDTVTGLSLSPDGSYILSN-AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 523 ~v~~l~~h~~~V~~i~~spdg~~las~-s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
....... -.....|+|+|+|+.|+.+ ...+.|.+|++..... .. ...+... .. ...+++.++|++.++...
T Consensus 177 ~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~-~~~~~~~----~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 177 TTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GT-AEVLVKI----PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TC-EEEEEEC----SS-EEEEEECTTSCEEEEEEE
T ss_pred EEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-Cc-cceEEeC----CC-CCCeEECCCCCEEEEecC
Confidence 4332222 2334679999999976655 5578999999874211 11 1122111 12 567899999987777644
Q ss_pred ----------CCeEEEEECCCCcEEEEecCCC----CCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 602 ----------DKCVYIWDTTTRRIAYKLPGHN----GSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 602 ----------Dg~V~iwd~~s~~~~~~l~~h~----~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.+.|..+|. .++.+..+.... ..++.+++ .++.++++....+.|..++++
T Consensus 249 ~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 467888887 477777665432 45777777 355555555567788888775
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00038 Score=81.08 Aligned_cols=183 Identities=13% Similarity=0.082 Sum_probs=124.1
Q ss_pred ccccCcccCCCeEEEEEeCC--CeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEE
Q psy4869 450 VNSCDPVRRGQLLIASGSDD--CTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTG-GIDNDIKMWDLRTNSVVQK 526 (2435)
Q Consensus 450 v~sv~~~~~~~~llasgs~D--g~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sg-s~dg~V~lwD~~s~~~v~~ 526 (2435)
...+.|.. ..++.+.+.+ ..|+.+|+.+++.+.................++.|+.. -.++.+.+||..+.+.+.+
T Consensus 23 tqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 23 TEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp EEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 34566654 4677777775 48999999999998887544443333233334555544 4689999999999999999
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccccc-ccCeEEEEEcCCCCEEEEecCCCeE
Q psy4869 527 LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF-EKNLLRCAWSVSGLYVTAGSADKCV 605 (2435)
Q Consensus 527 l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~-~~~i~~v~~spdg~~Lasgs~Dg~V 605 (2435)
+...... ..+ .+|+..|+.+..++.|.++|..+. +.+..+....... -..+..+.|. +|+..+..-.+..|
T Consensus 101 i~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~----~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I 172 (243)
T 3mbr_X 101 FRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTL----QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRI 172 (243)
T ss_dssp EECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTC----CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEE
T ss_pred EeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCC----eEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeE
Confidence 9754322 234 457777777777999999998753 4444444321111 1234556665 67766555568899
Q ss_pred EEEECCCCcEEEEecCC-------------CCCeeEEEEcCCCCEEEEEE
Q psy4869 606 YIWDTTTRRIAYKLPGH-------------NGSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 606 ~iwd~~s~~~~~~l~~h-------------~~~V~~l~fspd~~~Lasgs 642 (2435)
.+.|.++|+.+..+.-. ....+.|+|+|+++.|+..+
T Consensus 173 ~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 173 ARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999998887521 13568999999888776666
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00017 Score=84.63 Aligned_cols=179 Identities=9% Similarity=-0.002 Sum_probs=124.0
Q ss_pred cccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccE--EEEEECCCCCEEE-EEecCCeEEEEECCCCcEEEEE
Q psy4869 451 NSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQV--TSVAFNDTAECVL-TGGIDNDIKMWDLRTNSVVQKL 527 (2435)
Q Consensus 451 ~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v--~sv~~sp~g~~l~-sgs~dg~V~lwD~~s~~~v~~l 527 (2435)
..+.|. +..++.+.+.++.|+++|+.+++.+... ..... ..+++. ++.|+ ..-.++.+.+||..+.+.+.++
T Consensus 58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 345544 3578888999999999999999988776 43333 335554 44444 4456899999999999999998
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc-cccCeEEEEEcCCCCEEEEecCCCeEE
Q psy4869 528 RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN-FEKNLLRCAWSVSGLYVTAGSADKCVY 606 (2435)
Q Consensus 528 ~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~-~~~~i~~v~~spdg~~Lasgs~Dg~V~ 606 (2435)
...... ..++ +|++.|+.+..+++|.++|..+ .+.+..+...... .-..+..+.|. +|+..+..-.++.|.
T Consensus 133 ~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T----~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDG----FALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp ECSSCC-CCEE--EETTEEEEECSSSEEEEECTTT----CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred eCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCC----CeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence 753222 2333 6788888888899999999874 3444444422111 11234566776 776555555688999
Q ss_pred EEECCCCcEEEEecCC-------------CCCeeEEEEcCCCCEEEEEE
Q psy4869 607 IWDTTTRRIAYKLPGH-------------NGSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 607 iwd~~s~~~~~~l~~h-------------~~~V~~l~fspd~~~Lasgs 642 (2435)
+.|.++++.+..+.-. ....+.|+|+|+++.|+..+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999998887532 13578999999877555554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.02 E-value=9e-05 Score=101.82 Aligned_cols=271 Identities=10% Similarity=0.064 Sum_probs=154.1
Q ss_pred EEEECC-CCCEEEEEeCCC-----------eEEEEecCCce-eeEEEe-eCCCCCeeEEEEccCCCEEEEEeC-CCeEEE
Q psy4869 367 CSKYHP-DGQYIASSGYDR-----------QIFIWSVYGEC-ENIGVM-SGHTGAVMDLKFSTDGCHIFTCST-DQTLAV 431 (2435)
Q Consensus 367 ~l~fsp-dg~~Lasgs~Dg-----------~I~iwd~~~~~-~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~v 431 (2435)
.+++.+ +|++++.|+.+. .+.+||..... ..+..+ ..+......+++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 445666 888888887643 58889876532 222222 223444556788889999999885 458999
Q ss_pred EECCCCceEEEEeccCcccc-ccCcccCCCeEEEEEe-CC-----CeEEEEeCCCCcceEee-----cCcccEEEEEECC
Q psy4869 432 WDLEKGQRIKKMKGHSTFVN-SCDPVRRGQLLIASGS-DD-----CTVKVWDPRKKNQAVSM-----NNTYQVTSVAFND 499 (2435)
Q Consensus 432 wd~~tg~~v~~l~~h~~~v~-sv~~~~~~~~llasgs-~D-----g~I~vwD~~~~~~~~~~-----~~~~~v~sv~~sp 499 (2435)
||..+++....-..+..... ++...+++ .+++.|+ .+ ..+.+||+.+......- .....-....+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 99988765543222222222 22334455 4566666 44 56899999876543320 0000000112234
Q ss_pred CCCEEEEEecCC---------eEEEEECCCCcEEEEEecCCC---------CEEEEEEcC-CCCEEEEEECCC-------
Q psy4869 500 TAECVLTGGIDN---------DIKMWDLRTNSVVQKLRGHSD---------TVTGLSLSP-DGSYILSNAMDN------- 553 (2435)
Q Consensus 500 ~g~~l~sgs~dg---------~V~lwD~~s~~~v~~l~~h~~---------~V~~i~~sp-dg~~las~s~Dg------- 553 (2435)
++..++.|+.+| .+..||..+......+..+.. .-.++.|.. +++.++.|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 566666665554 467899888765443332211 224455543 677888887543
Q ss_pred ----cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----------CeEEEEECCCCcEEE-
Q psy4869 554 ----TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----------KCVYIWDTTTRRIAY- 617 (2435)
Q Consensus 554 ----~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----------g~V~iwd~~s~~~~~- 617 (2435)
.|.+||.... ... ............-..+...|+|++++.|+.+ ..+.+||..+.+-..
T Consensus 429 ~~~~~v~~yd~~~~----~W~-~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 429 TNAHIITLGEPGTS----PNT-VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp CCEEEEECCSTTSC----CEE-EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred CcceEEEcCCCCCC----Cee-EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 5677776531 111 1110011111122345667899999999864 468999998765432
Q ss_pred -EecCCCCCeeEEEEcCCCCEEEEEEC
Q psy4869 618 -KLPGHNGSVNDVQFHPKEPIIMSASS 643 (2435)
Q Consensus 618 -~l~~h~~~V~~l~fspd~~~Lasgs~ 643 (2435)
.+......-.+..+.|++++++.||.
T Consensus 504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCccccccHhhcCCCcEEEecCCC
Confidence 12112222334556789999999885
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00015 Score=85.10 Aligned_cols=184 Identities=13% Similarity=0.039 Sum_probs=128.9
Q ss_pred CeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee
Q psy4869 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM 486 (2435)
Q Consensus 407 ~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~ 486 (2435)
-...|.|+ ++.++.+.+.+|.|+++|+++++.+..+ -.. .....-....+..+.+....++.+.+||..+.+.+..+
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 34788887 3556667778889999999999988777 222 22221123345567777888999999999999998888
Q ss_pred cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEec--CC---CCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 487 NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG--HS---DTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 487 ~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~--h~---~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
.....-..++ ++++.|+....++.|+++|..+.+.+.++.- +. ..++.+.|. +|+..+..-.+..|.+.|.+
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence 6544323333 5788888888899999999999999888753 22 245778887 77555444468899999987
Q ss_pred CCCCCCceEEEEeCc---------ccccccCeEEEEEcCCCC-EEEEec
Q psy4869 562 PYVPGERCVKVMSGH---------QHNFEKNLLRCAWSVSGL-YVTAGS 600 (2435)
Q Consensus 562 ~~~~~~~~v~~~~~h---------~~~~~~~i~~v~~spdg~-~Lasgs 600 (2435)
.++.+..+.-. ......-...++|.|+++ ++++|-
T Consensus 210 ----TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 210 ----TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ----TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ----CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 45666666532 111223568899999764 555553
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.003 Score=77.71 Aligned_cols=229 Identities=11% Similarity=0.034 Sum_probs=142.3
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC-eEEEEeCCCCcceE
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC-TVKVWDPRKKNQAV 484 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg-~I~vwD~~~~~~~~ 484 (2435)
.....++|+++++.+++-..++.|..||.+. +....+.. ......+++.+++..+++....++ .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 4567899999988666666788999999864 33333332 335677888888864444333333 57777777766433
Q ss_pred ee--cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEEe---------cCCCCEEEEEEcCCCCEEEEEE-C
Q psy4869 485 SM--NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV-VQKLR---------GHSDTVTGLSLSPDGSYILSNA-M 551 (2435)
Q Consensus 485 ~~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~-v~~l~---------~h~~~V~~i~~spdg~~las~s-~ 551 (2435)
.. ........++..+++..+++-..+|.|+.+|...++. +.... ..-...+.| +||+++|+.+. .
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 22 2223345566655554444444589999999876532 22111 111245666 88887766554 5
Q ss_pred CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEE--EecCCCCCeeEE
Q psy4869 552 DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAY--KLPGHNGSVNDV 629 (2435)
Q Consensus 552 Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~--~l~~h~~~V~~l 629 (2435)
.++|..||+.... .......+... .....+++.++|+++++....+.|.++|.. ++... .+......++++
T Consensus 188 ~~~I~~~~~~~~g-~~~~~~~~~~~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 188 KMLLLRIPVDSTD-KPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp TTEEEEEEBCTTS-CBCCCEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred CCEEEEEEeCCCC-CCCccEEEecc-----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 7899999987310 00111111110 123457899999988887778899999975 66533 333334668999
Q ss_pred EEc---CCCCEEEEEECCC
Q psy4869 630 QFH---PKEPIIMSASSDK 645 (2435)
Q Consensus 630 ~fs---pd~~~Lasgs~Dg 645 (2435)
+|. |+++.|+.++..+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 998 8888777776554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0013 Score=76.56 Aligned_cols=184 Identities=10% Similarity=0.028 Sum_probs=126.0
Q ss_pred CCEEEEEEcCCCCEEEEEECC--CcEEEEEcCCCeEEEEEecCCcC-EEEEEEcCCCCEEE-EEECCCcEEEEEccCCce
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLD--TTVKIFFLDTFKFFISLYGHKLP-VLSLDMSYDSTLIA-TGSGDRTVKVWGLDYGDC 1116 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~-V~sl~~spdg~~L~-Sgs~Dg~I~vWd~~t~~~ 1116 (2435)
.-...+.|+. +.++.+.+.+ ..|+++|..+++.+..+...... --.+++ +++.|+ ..-.++.+.+||.++.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEEEEEECCcCcE
Confidence 4456788986 4444444443 48999999999999887643221 123333 344444 445688999999999999
Q ss_pred eEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecc-cccCeEEEEEeCCCCEEEEEeCCCc
Q psy4869 1117 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYG-HKLPVLSLDMSYDSTLIATGSGDRT 1195 (2435)
Q Consensus 1117 ~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~-h~~~V~~l~~s~dg~~l~sgs~Dg~ 1195 (2435)
+.++...... ..++ +++..|+.+..++.|.++|..+.+....+.... .+ .-..++.+.+. +|..++..-.+..
T Consensus 98 ~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~--~g~~~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 98 RARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA--GGRPLDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE--TTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc--CCcccccceeeEEe-CCEEEEEECCCCe
Confidence 9998754333 4554 457777777778999999999998877765211 11 11345677776 5654444446789
Q ss_pred EEEEEccCCceeeEeecc-------------CCCEEEEEEeeCCCEEEEEE
Q psy4869 1196 VKVWGLDYGDCHKSLLAH-------------EDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1196 V~iwd~~t~~~~~~~~~h-------------~~~V~~i~~spd~~~lvsgs 1233 (2435)
|.+.|.++++.+..+.-. .+-.+.|+|+|+++.|++.+
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 999999999988776521 13568999999877777766
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.01 Score=74.42 Aligned_cols=245 Identities=11% Similarity=0.025 Sum_probs=152.7
Q ss_pred CceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEE-eCCCeEEEEEccCCceeeccc
Q psy4869 886 SEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG-TKDGRLLIVDIGAGEILEDIP 964 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg-~~dg~V~vwd~~sg~~v~~~~ 964 (2435)
+..+|.+..+++ +|..+....|+..++........+.....+.+++|.+.++.|... ...+.|..+++..+.....+.
T Consensus 34 d~~~C~~~~~~~-~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp TSSCEEESSSCC-EEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCCcccccccCc-eeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 455677777744 555666677888998887766666666678899999877766654 468899999988665333222
Q ss_pred ccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEE
Q psy4869 965 AHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1044 (2435)
Q Consensus 965 ~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 1044 (2435)
........+++.+.+ +..+++-...+.|.+.+++.... ..+ ....-....
T Consensus 113 ~~~~~p~glavd~~~---------g~ly~~d~~~~~I~~~~~dG~~~---------------~~l------~~~~l~~P~ 162 (349)
T 3v64_C 113 TGLESPGGLAVDWVH---------DKLYWTDSGTSRIEVANLDGAHR---------------KVL------LWQSLEKPR 162 (349)
T ss_dssp SSCSCCCEEEEETTT---------TEEEEEETTTTEEEEEETTSCSC---------------EEE------ECTTCSCEE
T ss_pred CCCCCccEEEEecCC---------CeEEEEcCCCCeEEEEcCCCCce---------------EEE------EeCCCCCcc
Confidence 222334567776543 24555555677888887653110 000 001124578
Q ss_pred EEEEcCCCCEEEEEECC--CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCceeEEEe
Q psy4869 1045 CARVSPDSKLLAVSLLD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHKSLL 1121 (2435)
Q Consensus 1045 ~l~~spdg~~Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~-Dg~I~vWd~~t~~~~~~l~ 1121 (2435)
.++++|.+..|+..... +.|..++.+.......+...-.....|+|++++..|+.+.. .+.|..++++.......+.
T Consensus 163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe
Confidence 99999988777777643 67888887654332222323345789999987776666654 6679999986443333333
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1122 ~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
........+++. ++..+++-...+.|..++..+++....+
T Consensus 243 ~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 243 QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 334456777773 4444445455677888876555544443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0043 Score=78.98 Aligned_cols=252 Identities=9% Similarity=-0.019 Sum_probs=158.7
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCceEEEEec
Q psy4869 367 CSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEKGQRIKKMKG 445 (2435)
Q Consensus 367 ~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~v~~l~~ 445 (2435)
|.+..+.+ +|+.+ ....|+..++.+.... .+......+..++|++.+..|+.+ ...+.|+.++++.+.....+..
T Consensus 81 C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~--~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGPEP-VLLFA-NRIDIRQVLPHRSEYT--LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSSCC-EEEEE-CBSCEEEECTTSCCCE--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccccc-eeEee-cCccceeeccCCCcEE--EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 44445533 34333 3456888887654222 222234568899999866665554 4568899999976654444443
Q ss_pred cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEec-C-CeEEEEECCCCc
Q psy4869 446 HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGI-D-NDIKMWDLRTNS 522 (2435)
Q Consensus 446 h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~-d-g~V~lwD~~s~~ 522 (2435)
.......+++.+.+..++++-...+.|.+.++.......... .......++++|.+.+|+.... . +.|+.+++....
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 334456677777777888887888899999987554433332 3356789999998877776654 3 689999987544
Q ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 523 VVQKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 523 ~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
........-...+.|+|+|++..|+.+. ..+.|..+|+.. ......+... ......+++ ..+.++++-..
T Consensus 237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG----~~~~~~~~~~----~~~P~giav-~~~~ly~td~~ 307 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG----SHRKAVISQG----LPHPFAITV-FEDSLYWTDWH 307 (386)
T ss_dssp CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS----CSCEEEECSS----CSSEEEEEE-ETTEEEEEETT
T ss_pred cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC----CeeEEEEECC----CCCceEEEE-ECCEEEEeeCC
Confidence 3333333344578999998777666554 567899998763 1111222211 123456777 34566666667
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCeeEEEE
Q psy4869 602 DKCVYIWDTTTRRIAYKLPGHNGSVNDVQF 631 (2435)
Q Consensus 602 Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~f 631 (2435)
.+.|..+|..+|+.+..+.........|++
T Consensus 308 ~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 308 TKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 888999997788776666544344444443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0075 Score=76.75 Aligned_cols=244 Identities=11% Similarity=0.020 Sum_probs=151.4
Q ss_pred ceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEE-eCCCeEEEEEccCCceeecccc
Q psy4869 887 EVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG-TKDGRLLIVDIGAGEILEDIPA 965 (2435)
Q Consensus 887 ~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg-~~dg~V~vwd~~sg~~v~~~~~ 965 (2435)
.-+|.+..++ .+|..+....|+.+++........+.....+.+++|.+.++.|... ...+.|..+++..+.....+..
T Consensus 78 ~~~C~~~~~~-~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp SSCEEECSSC-CEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred CCeECCcccc-ceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 3446666664 4566666688999999887776666666678899999876666654 4688999999886654332222
Q ss_pred cccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEE
Q psy4869 966 HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1045 (2435)
Q Consensus 966 h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 1045 (2435)
.......+++.+.+ +..+++-...+.|.+.+++.... ..+ ....-.....
T Consensus 157 ~~~~p~glavd~~~---------g~lY~~d~~~~~I~~~~~dg~~~---------------~~l------~~~~l~~P~g 206 (386)
T 3v65_B 157 GLESPGGLAVDWVH---------DKLYWTDSGTSRIEVANLDGAHR---------------KVL------LWQSLEKPRA 206 (386)
T ss_dssp SCSCCCCEEEETTT---------TEEEEEETTTTEEEECBTTSCSC---------------EEE------ECSSCSCEEE
T ss_pred CCCCccEEEEEeCC---------CeEEEEcCCCCeEEEEeCCCCce---------------EEe------ecCCCCCCcE
Confidence 22233456666432 23455555566777666542110 000 0011245789
Q ss_pred EEEcCCCCEEEEEECC--CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEec
Q psy4869 1046 ARVSPDSKLLAVSLLD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLA 1122 (2435)
Q Consensus 1046 l~~spdg~~Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~ 1122 (2435)
++++|.+..|+..... +.|..++.+.......+...-.....|+|++++..|+.+. ..+.|..++++.......+..
T Consensus 207 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 207 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS
T ss_pred EEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC
Confidence 9999988888877653 5788888765443333333344578999998776666655 466799999864433333333
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1123 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1123 h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
.......+++. .+..+++-...+.|..+|..+++....+
T Consensus 287 ~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 287 GLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 34456777773 4455555556678888886666554444
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0064 Score=76.25 Aligned_cols=253 Identities=9% Similarity=-0.018 Sum_probs=156.8
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCceEEEE
Q psy4869 365 IFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEKGQRIKKM 443 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~v~~l 443 (2435)
.+|.+..+++.++++ ....|+..++.+... ..+......+..++|++.+..|+.+ ...+.|+.++++.+.....+
T Consensus 36 ~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPEPVLLFA--NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSCCEEEEE--CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccCceeEee--cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 345555554433333 344588888765422 2222233458899999866666555 45788999999766544444
Q ss_pred eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec-C-CeEEEEECCC
Q psy4869 444 KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI-D-NDIKMWDLRT 520 (2435)
Q Consensus 444 ~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~-d-g~V~lwD~~s 520 (2435)
.........+++.+.+..++++-...+.|.+.++......... ........++++|.+..|+.... . +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 3333445667777777788888788889999998765443333 23356789999997777666554 3 7899998875
Q ss_pred CcEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe
Q psy4869 521 NSVVQKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG 599 (2435)
Q Consensus 521 ~~~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg 599 (2435)
......+...-...++|+|+|++..|+.+. ..+.|..+|+.. ......+... ......+++ ..+..+++-
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG----~~~~~~~~~~----~~~P~giav-~~~~ly~td 262 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG----SHRKAVISQG----LPHPFAITV-FEDSLYWTD 262 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----CSCEEEECSS----CSSEEEEEE-ETTEEEEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC----CceEEEEeCC----CCCceEEEE-ECCEEEEec
Confidence 433222222334578999998777666554 567899999863 1111122211 123456666 355566666
Q ss_pred cCCCeEEEEECCCCcEEEEecCCCCCeeEEE
Q psy4869 600 SADKCVYIWDTTTRRIAYKLPGHNGSVNDVQ 630 (2435)
Q Consensus 600 s~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~ 630 (2435)
...+.|..+|..+|+.+..+.........|+
T Consensus 263 ~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 293 (349)
T 3v64_C 263 WHTKSINSANKFTGKNQEIIRNKLHFPMDIH 293 (349)
T ss_dssp TTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred CCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence 6778888888777776666644333344443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00031 Score=96.43 Aligned_cols=274 Identities=11% Similarity=-0.021 Sum_probs=151.7
Q ss_pred eEEEEEEec-CCCEEEEEeCCC-----------eEEEEEccCCceee--ccc-ccccceeEEEEecCCCCCCCcCCcceE
Q psy4869 927 YALSVCFVP-GDRHVLVGTKDG-----------RLLIVDIGAGEILE--DIP-AHSQELWSVAMLPDQFNPNVYLPLQIQ 991 (2435)
Q Consensus 927 ~v~~vafsp-dg~~Lavg~~dg-----------~V~vwd~~sg~~v~--~~~-~h~~~V~sv~~s~d~~~~~~~~p~~~~ 991 (2435)
...++++.+ +++.++.|+.+. .+.+||+.+++... .++ .+.....++++..++ ..
T Consensus 187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g----------~l 256 (656)
T 1k3i_A 187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG----------QI 256 (656)
T ss_dssp CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS----------CE
T ss_pred CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC----------CE
Confidence 334667788 888888876432 58899998887322 221 122234456666664 57
Q ss_pred EEEEeC-CCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEE-CC-----CcE
Q psy4869 992 VVTGGG-DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-LD-----TTV 1064 (2435)
Q Consensus 992 l~sgs~-Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~-~d-----g~V 1064 (2435)
++.|+. +..+.+||.....+... . .+...+.-.+++..++|+++++|+ .+ ..+
T Consensus 257 yv~GG~~~~~v~~yd~~t~~W~~~--------~------------~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 257 VVTGGNDAKKTSLYDSSSDSWIPG--------P------------DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp EEECSSSTTCEEEEEGGGTEEEEC--------C------------CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCE
T ss_pred EEeCCCCCCceEEecCcCCceeEC--------C------------CCCccccccceEEecCCeEEEEeCcccCCcccccc
Confidence 777774 56788888754332110 0 011122234556668999999998 33 568
Q ss_pred EEEEcCCCeEEEEE----ecCCcCEEEEEEcCCCCEEEEEECCC---------cEEEEEccCCceeEEEeccC-------
Q psy4869 1065 KIFFLDTFKFFISL----YGHKLPVLSLDMSYDSTLIATGSGDR---------TVKVWGLDYGDCHKSLLAHE------- 1124 (2435)
Q Consensus 1065 ~i~d~~~~~~~~~l----~~h~~~V~sl~~spdg~~L~Sgs~Dg---------~I~vWd~~t~~~~~~l~~h~------- 1124 (2435)
.+||..+.+....- ......-....+..++..++.|+.+| .+..||..+.........+.
T Consensus 317 e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 317 EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp EEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred eEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCC
Confidence 99998876543320 00000000011223455555555443 46788887766443332221
Q ss_pred --CCEEEEEEcc-CCCEEEEEeCCC-----------cEEEEeCCCcceeEEEEEEEeecccccC-eEEEEEeCCCCEEEE
Q psy4869 1125 --DSVTGVTFVP-KTHYFFTTSKDG-----------RVKQWDADNFERIVTLHFFISLYGHKLP-VLSLDMSYDSTLIAT 1189 (2435)
Q Consensus 1125 --~~V~~v~fsp-~~~~l~s~s~Dg-----------~V~iwD~~~~~~~~~~~~~~~~~~h~~~-V~~l~~s~dg~~l~s 1189 (2435)
..-.++.|.. ++++++.|+.++ .|.+||..+..-.... ....+... -.+++..++++.++.
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~----~~~mp~~R~~~~~~~l~~g~i~v~ 472 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA----SNGLYFARTFHTSVVLPDGSTFIT 472 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC----TTCCSSCCBSCEEEECTTSCEEEE
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc----cCCCCCCcccCCeEECCCCCEEEE
Confidence 1234555544 677777877532 5778887664322111 00111222 234456679999999
Q ss_pred EeCC-----------CcEEEEEccCCceee--EeeccCCCEEEEEEeeCCCEEEEEEC
Q psy4869 1190 GSGD-----------RTVKVWGLDYGDCHK--SLLAHEDSVTGVTFVPKTHYFFTTSK 1234 (2435)
Q Consensus 1190 gs~D-----------g~V~iwd~~t~~~~~--~~~~h~~~V~~i~~spd~~~lvsgs~ 1234 (2435)
|+.+ ..+.+||..+++-.. .+...........+.++++.++.|+.
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 9854 568999998765321 11111222334456689998888874
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0071 Score=74.30 Aligned_cols=239 Identities=11% Similarity=0.022 Sum_probs=135.0
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCC--cEEE
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG--RVKQ 1150 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg--~V~i 1150 (2435)
+.+..+... .....++|+++++++++-..++.|..||.+. +....+. .......+++.++++++++....+ .|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 344444322 4567899999998777666789999999764 3333332 335688999999998655544332 4667
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce-eeEee---------ccCCCEEEE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC-HKSLL---------AHEDSVTGV 1220 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~-~~~~~---------~h~~~V~~i 1220 (2435)
+|..+++...... . ........++..+++..+++-..++.|+.+|...++. +.... ..-.....|
T Consensus 100 ~d~~~g~~~~~~~----~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi 174 (306)
T 2p4o_A 100 LVKSDGTVETLLT----L-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL 174 (306)
T ss_dssp EECTTSCEEEEEE----C-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred EcCCCCeEEEEEe----C-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence 7766655322211 1 1122234455444444444444578899999875431 11110 011123444
Q ss_pred EEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccc
Q psy4869 1221 TFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRS 1299 (2435)
Q Consensus 1221 ~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~ 1299 (2435)
+++++.|+.+. ..+.|..||+.....+ +...++
T Consensus 175 --s~dg~~lyv~d~~~~~I~~~~~~~~g~~-----------------------~~~~~~--------------------- 208 (306)
T 2p4o_A 175 --KRFGNFLYVSNTEKMLLLRIPVDSTDKP-----------------------GEPEIF--------------------- 208 (306)
T ss_dssp --EEETTEEEEEETTTTEEEEEEBCTTSCB-----------------------CCCEEE---------------------
T ss_pred --CcCCCEEEEEeCCCCEEEEEEeCCCCCC-----------------------CccEEE---------------------
Confidence 56665554443 3455555555321000 000000
Q ss_pred cceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEE--EecCCCCCeEEEEEe---cCCCEEEEE
Q psy4869 1300 HKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI--SLYGHKLPVLSLDMS---YDSTLIATG 1374 (2435)
Q Consensus 1300 ~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~--~~~~h~~~V~~la~s---pdg~~L~sG 1374 (2435)
.. ......++++++|+++++....++|.+|+.+ ++... .+........+++|. ||++.|+..
T Consensus 209 -------~~-----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 209 -------VE-----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp -------EE-----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred -------ec-----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEE
Confidence 00 0123457888999887777778999999975 55532 344334568999998 898877666
Q ss_pred eCCC
Q psy4869 1375 SGDR 1378 (2435)
Q Consensus 1375 g~Dg 1378 (2435)
...+
T Consensus 276 ~~~~ 279 (306)
T 2p4o_A 276 TNGG 279 (306)
T ss_dssp ECTT
T ss_pred CCCC
Confidence 5443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.41 Score=66.59 Aligned_cols=488 Identities=9% Similarity=0.018 Sum_probs=260.3
Q ss_pred CceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe-CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc-
Q psy4869 886 SEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI- 963 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~-~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~- 963 (2435)
..|.++....+|. |..|..+.+..||..+.+...... ....+.++.. .+ ..|.+|+.+ .|..+|.+++++..-.
T Consensus 63 ~~i~~i~~d~~g~-lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~-g~lWigt~~-Gl~~~~~~~~~~~~~~~ 138 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL-QG-DTLWLGALN-GLYTYQLQSRKLTSFDT 138 (758)
T ss_dssp SCEEEEEEETTTE-EEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE-ET-TEEEEEETT-EEEEEETTTCCEEEECH
T ss_pred ceEEEEEEcCCCc-EEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe-cC-CcEEEEcCC-cceeEeCCCCeEEEecc
Confidence 4688888877774 455556678999988764332111 2234665543 34 467777766 6888998877653220
Q ss_pred ---cccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccC
Q psy4869 964 ---PAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1040 (2435)
Q Consensus 964 ---~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1040 (2435)
......|.++....++ .|..|...| |..++.....+.. + .. ........
T Consensus 139 ~~~~l~~~~i~~i~~d~~g-----------~lWigt~~G-l~~~~~~~~~~~~--------~-------~~-~~~~~~~~ 190 (758)
T 3ott_A 139 RRNGLPNNTIYSIIRTKDN-----------QIYVGTYNG-LCRYIPSNGKFEG--------I-------PL-PVHSSQSN 190 (758)
T ss_dssp HHHCCSCSCEEEEEECTTC-----------CEEEEETTE-EEEEETTTTEEEE--------E-------CC-CCCTTCSS
T ss_pred CCCCcCCCeEEEEEEcCCC-----------CEEEEeCCC-HhhCccCCCceEE--------e-------cC-CCcccccc
Confidence 0112356666655554 455555544 5556543211100 0 00 00000112
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l 1120 (2435)
..|.++....++..|.+|.. +-+..|+..+.+...........|.++....+|.+.+ |..+ -|.+++..+++.....
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHII 267 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEEC
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEE
Confidence 35888888888876666764 4588888776654322111234588888877777555 5544 5888887766543221
Q ss_pred ec-------cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEe-ecccccCeEEEEEeCCCCEEEEEeC
Q psy4869 1121 LA-------HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFIS-LYGHKLPVLSLDMSYDSTLIATGSG 1192 (2435)
Q Consensus 1121 ~~-------h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~-~~~h~~~V~~l~~s~dg~~l~sgs~ 1192 (2435)
.. ....|.++....++. |..|...| +.++.... .......... .......|.++....+|.+- .|+.
T Consensus 268 ~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~ 342 (758)
T 3ott_A 268 HDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGA 342 (758)
T ss_dssp CCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEET
T ss_pred cCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeC
Confidence 11 234588888887776 44455556 54443221 1111110000 00123468888887777644 4455
Q ss_pred CCcEEEEEccCCc--eeeEeec-------cCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEee-CC------
Q psy4869 1193 DRTVKVWGLDYGD--CHKSLLA-------HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF-NP------ 1256 (2435)
Q Consensus 1193 Dg~V~iwd~~t~~--~~~~~~~-------h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~-~~------ 1256 (2435)
+| +..++..+++ ....+.. ....|.++.-..+++ |..|+ ++-|..||..+.+.. .+.. ..
T Consensus 343 ~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~-~~~~~~~~~~~~~ 418 (758)
T 3ott_A 343 NG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFI-HYNIVDNTGTYNT 418 (758)
T ss_dssp TE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEE-EEEEECCC--CBS
T ss_pred Cc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEE-EeecCCCcCCCCC
Confidence 54 6667665432 1112211 123588888777776 45556 457889998765432 2211 10
Q ss_pred -c---ccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEe
Q psy4869 1257 -N---VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVS 1332 (2435)
Q Consensus 1257 -~---~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavg 1332 (2435)
. .+......|..|+..+-+.+++.+....... . ... .. .............|.++...++|...+.+
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~-~----~~~-~~---~~~~~~~~l~~~~i~~i~~d~~g~lWi~~ 489 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTS-G----QYI-AE---QNYSVHNGLSGMFINQIIPDNEGNVWVLL 489 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCS-S----EEE-CS---EEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCC-c----cee-cc---cccccccccccceeeeEEEcCCCCEEEEc
Confidence 0 1112234566777666777777542100000 0 000 00 00000011112458899988888866533
Q ss_pred ecCCeEEEEEcccceEEEEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE-ecc-cccceEEEEEe
Q psy4869 1333 LLDTTVKIFFLDTFKFFISLYG---HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LLA-HEDSVTGVTFV 1407 (2435)
Q Consensus 1333 s~dG~V~v~d~~~~k~i~~~~~---h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~-~~~-h~~~V~~laf~ 1407 (2435)
+..+.|..||.++++....... ....+.++....+|++.+.. .+| +..|+.++++.... ..+ ....|.++...
T Consensus 490 ~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~ 567 (758)
T 3ott_A 490 YNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQQSISFGSFSNNEILSMTCV 567 (758)
T ss_dssp TTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCCCBCCCCC---CCEEEEEEE
T ss_pred cCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCceEEecccCCCccceEEEEEC
Confidence 3345688889887665433221 12457888888888876544 445 77788766653221 011 12458888774
Q ss_pred eCCCEEEEEeCCCcEEEEECCCce
Q psy4869 1408 PKTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1408 P~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
++.+.++. . ..|..+|..+.+
T Consensus 568 -~g~lWi~t-~-~Gl~~~~~~~~~ 588 (758)
T 3ott_A 568 -KNSIWVST-T-NGLWIIDRKTMD 588 (758)
T ss_dssp -TTEEEEEE-S-SCEEEEETTTCC
T ss_pred -CCCEEEEC-C-CCeEEEcCCCce
Confidence 66655544 3 458888988654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.029 Score=69.21 Aligned_cols=228 Identities=9% Similarity=0.001 Sum_probs=142.2
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCC----CceEEEEeccCccccccCccc
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEK----GQRIKKMKGHSTFVNSCDPVR 457 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~t----g~~v~~l~~h~~~v~sv~~~~ 457 (2435)
...|+..|+...... . +......+..++|++++..|+.+ ..++.|+.+++.. ......+.........+++.+
T Consensus 9 ~~~I~~i~~~~~~~~-~-~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYT-S-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp BSSEEEEETTSCCCE-E-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CCeEEEEECCCcceE-e-hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 345788887654221 1 22234567899999876666555 4568999999875 222222332323456677766
Q ss_pred CCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEecC--CeEEEEECCCCcEEEEE-ecCCCC
Q psy4869 458 RGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGID--NDIKMWDLRTNSVVQKL-RGHSDT 533 (2435)
Q Consensus 458 ~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~d--g~V~lwD~~s~~~v~~l-~~h~~~ 533 (2435)
.+..+.++-...+.|.++|+.......... .......++++|.+..|+..... +.|..+++.... ...+ ...-..
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~ 165 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQW 165 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSC
T ss_pred cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCC
Confidence 666777777788999999987654333332 34567899999977777766543 789999886433 3333 233456
Q ss_pred EEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 534 VTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 534 V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
.+.|+++|++..|+.+. ..+.|..+|+.. ........... .......+++. .+.++++-...+.|..+|..+
T Consensus 166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg----~~~~~~~~~~~--~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEK--RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS----CSCEEEEECTT--TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred ceEEEEeccCCEEEEEECCCCeEEEEecCC----CceEEEeecCC--ccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC
Confidence 78999999877776555 567899999863 11111111110 01234566764 456666666778999999888
Q ss_pred CcEEEEec
Q psy4869 613 RRIAYKLP 620 (2435)
Q Consensus 613 ~~~~~~l~ 620 (2435)
++.+..+.
T Consensus 239 g~~~~~i~ 246 (316)
T 1ijq_A 239 GSDVNLLA 246 (316)
T ss_dssp CCCCEEEE
T ss_pred CcceEEEe
Confidence 87666554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.028 Score=69.26 Aligned_cols=231 Identities=9% Similarity=-0.048 Sum_probs=142.8
Q ss_pred EEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEE-eCCCeEEEEEccC----CceeecccccccceeEE
Q psy4869 899 ALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG-TKDGRLLIVDIGA----GEILEDIPAHSQELWSV 973 (2435)
Q Consensus 899 ~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg-~~dg~V~vwd~~s----g~~v~~~~~h~~~V~sv 973 (2435)
+|..+....|+..|+.+.+....+.....+.+++|.+.++.|... ..++.|..+++.. ......+.........+
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl 82 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 82 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred EEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE
Confidence 455666678999999988777777766778899999977766654 4678999999876 22222222222344677
Q ss_pred EEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCC
Q psy4869 974 AMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1053 (2435)
Q Consensus 974 ~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~ 1053 (2435)
++.+.+ +..+++-...+.|.+.+++.... .. ... ........++++|.+.
T Consensus 83 avd~~~---------~~ly~~d~~~~~I~~~~~~g~~~---------------~~--~~~----~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 83 AVDWIH---------SNIYWTDSVLGTVSVADTKGVKR---------------KT--LFR----ENGSKPRAIVVDPVHG 132 (316)
T ss_dssp EEETTT---------TEEEEEETTTTEEEEEETTSSSE---------------EE--EEE----CTTCCEEEEEEETTTT
T ss_pred EEeecC---------CeEEEEECCCCEEEEEeCCCCce---------------EE--EEE----CCCCCcceEEeCCCCC
Confidence 776432 23455555678888887652110 00 000 1124678999999888
Q ss_pred EEEEEECC--CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEec---cCCCE
Q psy4869 1054 LLAVSLLD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLA---HEDSV 1127 (2435)
Q Consensus 1054 ~Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~---h~~~V 1127 (2435)
.|+.+... +.|..++.+...........-.....|++++++..|+.+. ..+.|..+|++.. ....+.. .....
T Consensus 133 ~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P 211 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHP 211 (316)
T ss_dssp EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSE
T ss_pred EEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCc
Confidence 77777653 6788888765433222233345678999999877776665 4568999998743 3333321 22345
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEE
Q psy4869 1128 TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1161 (2435)
Q Consensus 1128 ~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~ 1161 (2435)
..+++. .+..+++-...+.|..++..+++....
T Consensus 212 ~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~ 244 (316)
T 1ijq_A 212 FSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL 244 (316)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred EEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEE
Confidence 677775 344445555567888888766654443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0023 Score=82.66 Aligned_cols=243 Identities=9% Similarity=0.082 Sum_probs=143.5
Q ss_pred CCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC----eEEEEeCCCC
Q psy4869 406 GAVMDLKFST-DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC----TVKVWDPRKK 480 (2435)
Q Consensus 406 ~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg----~I~vwD~~~~ 480 (2435)
.....|+|+| ++..|+.+...+.|+.+|++.++.. .+.........+++.+++..++++...++ .+.+++.. +
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 3557889998 4566777766688999999766543 33334455677888898876777665332 34444432 2
Q ss_pred cce--EeecCcccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEEec-CCCCEEEEEEcCCCCEEEEE-ECCCcE
Q psy4869 481 NQA--VSMNNTYQVTSVAFND-TAECVLTGGIDNDIKMWDLRTNSVVQKLRG-HSDTVTGLSLSPDGSYILSN-AMDNTV 555 (2435)
Q Consensus 481 ~~~--~~~~~~~~v~sv~~sp-~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~-h~~~V~~i~~spdg~~las~-s~Dg~I 555 (2435)
... ..+........++++| +|.++++-..++.|+.||...+........ .......|+|+|+|++|+.+ ...++|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 221 2222233456788999 666666656778999999987765322221 22356899999999965554 467889
Q ss_pred EEEEcCCCCCCCceEEEEeCc---cc---------ccccCeE-EEEEc--------CCCCEEEEecCCCeEEEEECCCCc
Q psy4869 556 RIWDIRPYVPGERCVKVMSGH---QH---------NFEKNLL-RCAWS--------VSGLYVTAGSADKCVYIWDTTTRR 614 (2435)
Q Consensus 556 ~lWdl~~~~~~~~~v~~~~~h---~~---------~~~~~i~-~v~~s--------pdg~~Lasgs~Dg~V~iwd~~s~~ 614 (2435)
..++..........+..+.+. .. .+ .... .+... ++|.++++-...+.|+.++ .+|+
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~-~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARM-HAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBB-SSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEe-CCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCc
Confidence 998875210000001122211 00 01 1122 34443 4466677766778899998 4565
Q ss_pred EEEEecC----C-------------CCCeeEEEEcCC-CCEEEEEECCCcEEEecC
Q psy4869 615 IAYKLPG----H-------------NGSVNDVQFHPK-EPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 615 ~~~~l~~----h-------------~~~V~~l~fspd-~~~Lasgs~Dg~I~vWd~ 652 (2435)
....... . -.....|++.|+ +.++++-.....|+..++
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 4433211 0 125788999985 555555445567776654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.022 Score=70.67 Aligned_cols=273 Identities=10% Similarity=0.037 Sum_probs=149.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEecCCc--eeeEEE-eeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCce
Q psy4869 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE--CENIGV-MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR 439 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~--~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~ 439 (2435)
..+.++.|.+++..+++ +..|.|... ...+ ...... .......+.+|.|.+ + .++.++.++.|.. ..+.|+.
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTSS
T ss_pred CcEEEEEECCCCcEEEE-cCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCCC
Confidence 46889999888887775 457765333 2222 111110 112345788999975 3 4555566665544 3333444
Q ss_pred EEEEec---cCccccccCcccCCCeEEEEEeCCCeE-EEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEE
Q psy4869 440 IKKMKG---HSTFVNSCDPVRRGQLLIASGSDDCTV-KVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKM 515 (2435)
Q Consensus 440 v~~l~~---h~~~v~sv~~~~~~~~llasgs~Dg~I-~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~l 515 (2435)
...+.. +...+..+.+.+++ .+++.+ .++.| +-.|--..-..........+..+++.+++.+++++...+..+-
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S 188 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYST 188 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEE
T ss_pred ceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEE
Confidence 333321 22234455544444 444444 34543 3333211111111233456889999999988877654444444
Q ss_pred EE--CCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCC
Q psy4869 516 WD--LRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSG 593 (2435)
Q Consensus 516 wD--~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg 593 (2435)
.| -.+.+.+. ......+..+.+.+++..+ .++.+|.+++++... ++.-.............+..+.+.+++
T Consensus 189 ~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~----G~tW~~~~~~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 189 WEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDN----SENWGELLSPLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp ECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTE----EEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred eCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCC----CCeeEeccCCcccCCcceEEEEecCCC
Confidence 45 34555542 3455678999999998765 455678887764220 111111110000011247788899888
Q ss_pred CEEEEecCCCeEEEEECCCCcEEEEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 594 LYVTAGSADKCVYIWDTTTRRIAYKLP---GHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 594 ~~Lasgs~Dg~V~iwd~~s~~~~~~l~---~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
.+++++. ++.| ++....|+--..+. .+...+.++.|.+++ .++.++.+|.|.-++-
T Consensus 262 ~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 262 EVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp CEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 8777765 5656 34444454444343 234678899997544 5777788998876654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.017 Score=68.15 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=112.1
Q ss_pred EEecCCcCEEEEEEcCCCCE-EEEEECCCcEEEEEccCCceeEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy4869 1077 SLYGHKLPVLSLDMSYDSTL-IATGSGDRTVKVWGLDYGDCHKSLLA-HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1154 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~~-L~Sgs~Dg~I~vWd~~t~~~~~~l~~-h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~ 1154 (2435)
.+.+-...+..|+|+|+++. +++...++.|...|.. ++.++.+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 34455567999999997664 4557888999999998 888887743 23567889999888877776678899999987
Q ss_pred CcceeEEEEEEEe---ecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC---CceeeEee-------ccCCCEEEEE
Q psy4869 1155 NFERIVTLHFFIS---LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY---GDCHKSLL-------AHEDSVTGVT 1221 (2435)
Q Consensus 1155 ~~~~~~~~~~~~~---~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t---~~~~~~~~-------~h~~~V~~i~ 1221 (2435)
....+........ ........-.++|++.+..|+++.......+|.+.. ...+..+. .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6554333332221 123456689999999998888877665556666541 11122221 1234678999
Q ss_pred EeeCCCEEEEEE-CCCcEEEEECC
Q psy4869 1222 FVPKTHYFFTTS-KDGRVKQWDAD 1244 (2435)
Q Consensus 1222 ~spd~~~lvsgs-~Dg~I~vwD~~ 1244 (2435)
++|....++.-+ ..+.|.++|..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC
Confidence 999655555555 56667777754
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.64 E-value=7.1e-06 Score=118.03 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=18.9
Q ss_pred eecccchhhhheeeeeechhhhH-HHHHhHhhhh
Q psy4869 1625 KKFLFSSELEEVLLVLSLSQVTD-LLTHLSSLLD 1657 (2435)
Q Consensus 1625 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 1657 (2435)
..++.++++-|.+-||=.+++-. |++-|...+.
T Consensus 1330 ~~rt~sNdI~ei~~vlGIEAAR~~Ii~Ei~~v~~ 1363 (1752)
T 3h0g_A 1330 ATRTYSNSFVEILQILGIEATRSALLKELRNVIE 1363 (1752)
T ss_dssp TTTCCCSCHHHHHHHSCHHHHHHHHHHHHHTTSC
T ss_pred cccCeeCCHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555677777777776664433 3455555544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0051 Score=79.39 Aligned_cols=243 Identities=7% Similarity=0.042 Sum_probs=143.8
Q ss_pred CCeeEEEEccC--CCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC---Ce-EEEEeCCC
Q psy4869 406 GAVMDLKFSTD--GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD---CT-VKVWDPRK 479 (2435)
Q Consensus 406 ~~V~~l~~s~d--g~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D---g~-I~vwD~~~ 479 (2435)
.....|+|+++ +..|+.+...+.|+.+|..+++... +.........+++.+++. ++++.... .. +..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999984 4566666555889999997776544 333445567888888887 55544321 12 33333322
Q ss_pred Ccc-eEeecCcccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEE-e-cCCCCEEEEEEcCCCCEEEEEE-CCCc
Q psy4869 480 KNQ-AVSMNNTYQVTSVAFND-TAECVLTGGIDNDIKMWDLRTNSVVQKL-R-GHSDTVTGLSLSPDGSYILSNA-MDNT 554 (2435)
Q Consensus 480 ~~~-~~~~~~~~~v~sv~~sp-~g~~l~sgs~dg~V~lwD~~s~~~v~~l-~-~h~~~V~~i~~spdg~~las~s-~Dg~ 554 (2435)
+.. ...+........++++| +|.+.++-..++.|+.+|..+++....+ . +....-..|+|+|+|++|+.+. ..++
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 111 01122233456788999 6665555556789999999888763333 2 1222335799999999665554 5788
Q ss_pred EEEEEcCCCCCCCceEEEEeCc---cc--------ccccCeEEEEE---------cCCCCEEEEecCCCeEEEEECCCCc
Q psy4869 555 VRIWDIRPYVPGERCVKVMSGH---QH--------NFEKNLLRCAW---------SVSGLYVTAGSADKCVYIWDTTTRR 614 (2435)
Q Consensus 555 I~lWdl~~~~~~~~~v~~~~~h---~~--------~~~~~i~~v~~---------spdg~~Lasgs~Dg~V~iwd~~s~~ 614 (2435)
|+.+++............+.+. .. ..-.....+++ .++|+++++-...+.|+.++. +|.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 9998875211000111122111 00 00123567888 778888888888899999985 564
Q ss_pred EEEEecCC------------------CCCeeEEEEc-CCCCEEEEEECCCcEEEecC
Q psy4869 615 IAYKLPGH------------------NGSVNDVQFH-PKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 615 ~~~~l~~h------------------~~~V~~l~fs-pd~~~Lasgs~Dg~I~vWd~ 652 (2435)
..... +. -.....|++. +++.++++-...+.|+..++
T Consensus 376 v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 376 VTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 43322 21 1236788888 55555555555667776654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.61 E-value=0.036 Score=70.73 Aligned_cols=239 Identities=9% Similarity=-0.004 Sum_probs=150.9
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCC----ceEEEEeccCccccccCccc
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKG----QRIKKMKGHSTFVNSCDPVR 457 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg----~~v~~l~~h~~~v~sv~~~~ 457 (2435)
...|+..++...... .+......+..|+|++.+..|+-+. ..+.|+.+++... .....+.........+++.+
T Consensus 91 ~~~I~~i~l~~~~~~--~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~ 168 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYT--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 168 (400)
T ss_dssp TTEEEEECTTSCSCE--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred cceeEEEccCCccee--EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence 467888887654221 2233456788999998666666554 5678999998652 22333332334455667766
Q ss_pred CCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCCE
Q psy4869 458 RGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDTV 534 (2435)
Q Consensus 458 ~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~V 534 (2435)
.+..++++-...+.|.+.++........+. .......++++|.+.+|+.... .+.|...++........+...-...
T Consensus 169 ~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P 248 (400)
T 3p5b_L 169 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 248 (400)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCE
T ss_pred cCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCce
Confidence 666788887888899999988665444443 4445889999998777777653 3789999987554433334334567
Q ss_pred EEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC
Q psy4869 535 TGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR 613 (2435)
Q Consensus 535 ~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~ 613 (2435)
+.|++++++..|+.+. ..+.|..+|+.. ........... .......+++. .+.++.+-...+.|..+|..+|
T Consensus 249 ~glavd~~~~~lY~aD~~~~~I~~~d~dG----~~~~~~~~~~~--~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 249 NGITLDLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEK--RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTS----CCCEEEEECSS--TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred EEEEEEeCCCEEEEEECCCCEEEEEeCCC----CccEEEEeCCC--CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 9999999877777654 567899999863 11112222111 01234556663 3445555566788999998888
Q ss_pred cEEEEecCCCCCeeEEE
Q psy4869 614 RIAYKLPGHNGSVNDVQ 630 (2435)
Q Consensus 614 ~~~~~l~~h~~~V~~l~ 630 (2435)
+.+..+.........|.
T Consensus 322 ~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 322 SDVNLLAENLLSPEDMV 338 (400)
T ss_dssp CCCEEEECSCSCEEEEE
T ss_pred CceEEEecCCCCCceEE
Confidence 77776654444445443
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.59 E-value=9e-06 Score=116.98 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=16.8
Q ss_pred eeeEEeccccccCcccceeeCcc--cchhH
Q psy4869 1711 EFLIQCQYCDFDSSMNLLSVSPY--ITNNL 1738 (2435)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 1738 (2435)
|+.++..-|.|-.-|++-.|-+. .+||+
T Consensus 1309 ~~~l~teG~nL~~v~~~~gVD~~rt~sNdI 1338 (1752)
T 3h0g_A 1309 EWVLETDGINLTEAMTVEGVDATRTYSNSF 1338 (1752)
T ss_dssp EEEEECCSCCCSTTTSSSSCCTTTCCCSCH
T ss_pred eEEEEecccCHHHHhCcCCCccccCeeCCH
Confidence 56677777777776666544443 34554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.56 E-value=0.13 Score=65.61 Aligned_cols=251 Identities=9% Similarity=-0.088 Sum_probs=148.6
Q ss_pred cEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEe-CCCeEEEEEccCCceeecccccccceeEEEEe
Q psy4869 898 LALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGT-KDGRLLIVDIGAGEILEDIPAHSQELWSVAML 976 (2435)
Q Consensus 898 ~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~-~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s 976 (2435)
.+|.......|+..++........+.....+.+|+|.+.++.|.... ..+.|..+++..+....
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~--------------- 148 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------------- 148 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C---------------
T ss_pred ceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC---------------
Confidence 35666667889999998877777677667788899998666555443 45566655543211000
Q ss_pred cCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEE
Q psy4869 977 PDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1056 (2435)
Q Consensus 977 ~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~La 1056 (2435)
....+.. .....+..+++++.+..|+
T Consensus 149 ----------------------~~~~~~~--------------------------------~~~~~p~glavD~~~~~lY 174 (400)
T 3p5b_L 149 ----------------------SYDTVIS--------------------------------RDIQAPDGLAVDWIHSNIY 174 (400)
T ss_dssp ----------------------CCEEEEC--------------------------------SSCSCEEEEEEETTTTEEE
T ss_pred ----------------------cceEEEe--------------------------------CCCCCcccEEEEecCCceE
Confidence 0000000 0012355677777555555
Q ss_pred EEEC-CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC--CCcEEEEEccCCceeEEEeccCCCEEEEEEc
Q psy4869 1057 VSLL-DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG--DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1133 (2435)
Q Consensus 1057 vg~~-dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~--Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fs 1133 (2435)
.... .+.|.+.+++.......+.........|++.|.+..|+.... .+.|...+++.......+...-.....|+++
T Consensus 175 ~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd 254 (400)
T 3p5b_L 175 WTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD 254 (400)
T ss_dssp EEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEE
T ss_pred EEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEE
Confidence 5543 467777777765544444444455789999987666665553 3678888876443333333333567899999
Q ss_pred cCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeec
Q psy4869 1134 PKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1212 (2435)
Q Consensus 1134 p~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~ 1212 (2435)
+++..|+.+. ..+.|..+|+........+. ..........+++. .+..+++-...+.|..+|..+|+.+..+..
T Consensus 255 ~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~----~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 255 LLSGRLYWVDSKLHSISSIDVNGGNRKTILE----DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCCCEEEEE----CSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred eCCCEEEEEECCCCEEEEEeCCCCccEEEEe----CCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 8777777665 45789999987543322221 11223345567764 334445555667899999888877766654
Q ss_pred cCCCEEEEEE
Q psy4869 1213 HEDSVTGVTF 1222 (2435)
Q Consensus 1213 h~~~V~~i~~ 1222 (2435)
......+|..
T Consensus 330 ~~~~p~~i~v 339 (400)
T 3p5b_L 330 NLLSPEDMVL 339 (400)
T ss_dssp SCSCEEEEEE
T ss_pred CCCCCceEEE
Confidence 4444444443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.071 Score=65.97 Aligned_cols=271 Identities=9% Similarity=-0.006 Sum_probs=149.0
Q ss_pred CCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe-----CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCc-
Q psy4869 885 HSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID-----TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGE- 958 (2435)
Q Consensus 885 ~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~-----~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~- 958 (2435)
...+.+|+|.+++..+++|..+.| +...+.++.-..+. ....+.+|.|.+ ++.+++ +..|.|+. ....|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSS
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCC
Confidence 347999999888888888877754 44444443222221 244678899976 444444 45665543 333344
Q ss_pred --eeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 959 --ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1036 (2435)
Q Consensus 959 --~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (2435)
.+.....+...+..+.+.+++ ..++ ++.+|.|.. ..+.+. .. ... .
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~----------~~~~-~~~~g~v~~-S~DgG~-tW----------------~~~---~ 158 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNG----------SAEM-ITNVGAIYR-TKDSGK-NW----------------QAL---V 158 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETT----------EEEE-EETTCCEEE-ESSTTS-SE----------------EEE---E
T ss_pred ceECccccCCCCCeEEEEEECCC----------CEEE-EeCCccEEE-EcCCCC-CC----------------EEe---e
Confidence 221111223456777776554 3344 445564422 112111 00 000 0
Q ss_pred cccCCCEEEEEEcCCCCEEEEEECCCcEEE-EE--cCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC
Q psy4869 1037 LKLEEQVLCARVSPDSKLLAVSLLDTTVKI-FF--LDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1113 (2435)
Q Consensus 1037 ~~~~~~v~~l~~spdg~~Lavg~~dg~V~i-~d--~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t 1113 (2435)
......+..+.+.+++.+++++. +|.+.. .| -.+++.+. ......+..+.+.+++.++ .++.+|.+++.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDN 234 (327)
T ss_dssp CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTE
T ss_pred cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCC
Confidence 11234678899999998887775 444443 33 23445442 2355678999999988755 456788887764333
Q ss_pred CceeEEEe-c---cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEE
Q psy4869 1114 GDCHKSLL-A---HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIAT 1189 (2435)
Q Consensus 1114 ~~~~~~l~-~---h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 1189 (2435)
|+.-..+. . +...+..+.+.+++..++++ .++.| ++..+.++....+. ........+.++.|.++ ..+++
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~---~~~~~~~~~~~v~~~~~-~~~~~ 308 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDV---DVKKVPSNFYKILFFSP-DQGFI 308 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECG---GGTTSSSCCCEEEEEET-TEEEE
T ss_pred CCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcC---ccCCCCCCeEEEEEECC-CceEE
Confidence 33222222 1 23458899999877655554 46666 34444443332221 00012356788888744 45667
Q ss_pred EeCCCcEEEEEc
Q psy4869 1190 GSGDRTVKVWGL 1201 (2435)
Q Consensus 1190 gs~Dg~V~iwd~ 1201 (2435)
++.+|.|..++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 778888776654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.01 Score=70.18 Aligned_cols=206 Identities=9% Similarity=0.113 Sum_probs=135.2
Q ss_pred EEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec--CcccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 442 KMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN--NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 442 ~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~--~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
.+.+-...+..+++.|++..++++...++.|...|.. ++....+. .......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445555688889999888888888889999999998 77666653 33568889999999877776677899999886
Q ss_pred CCcE---EEEEe------cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCc---ccccccCeEEE
Q psy4869 520 TNSV---VQKLR------GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGH---QHNFEKNLLRC 587 (2435)
Q Consensus 520 s~~~---v~~l~------~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h---~~~~~~~i~~v 587 (2435)
.... +.... .+.....+|+|+|+++.|+++.......||.++. ......+...... .......+..+
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cccCCceeeecchhhccccccCCceeE
Confidence 5442 23332 1344568999999998888877665666666542 1112222222110 00112345788
Q ss_pred EEcCCC-CEEEEecCCCeEEEEECCCCcEEEEecCCC---------CCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 588 AWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHN---------GSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 588 ~~spdg-~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~---------~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
++.|.. ++++.....+.|.++|.. |+++..+.-.. .....|+|.++|++.++ ++-..++.+.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 898855 455555567788899965 55655443221 25689999999984444 6666666554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.013 Score=75.50 Aligned_cols=236 Identities=8% Similarity=0.052 Sum_probs=141.6
Q ss_pred EEEEECC-CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC-C----eEEEEECCCCce
Q psy4869 366 FCSKYHP-DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD-Q----TLAVWDLEKGQR 439 (2435)
Q Consensus 366 ~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-g----~I~vwd~~tg~~ 439 (2435)
..|+++| ++..|+.+...+.|+.+|...... ..+.........|+|++++++|+.+... + .+.+++. .+..
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v--~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~ 216 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV--STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF 216 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEE--EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEE--EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence 5678888 455666666558899999876432 2333345678899999999977766542 1 3444453 3322
Q ss_pred E--EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe--ecCcccEEEEEECCCCCEEEEEe-cCCeEE
Q psy4869 440 I--KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS--MNNTYQVTSVAFNDTAECVLTGG-IDNDIK 514 (2435)
Q Consensus 440 v--~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~--~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~ 514 (2435)
. ..+.. ......+++.|.+..++++-..++.|..+|...+..... .........++|+|+|++|++.. ..+.|+
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1 22321 233566777885556777777788999999986654222 22334578999999999666654 568899
Q ss_pred EEECCC--CcE--EEEEecC------C---------CCEE-EEEEc--------CCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 515 MWDLRT--NSV--VQKLRGH------S---------DTVT-GLSLS--------PDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 515 lwD~~s--~~~--v~~l~~h------~---------~~V~-~i~~s--------pdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
.+|... ++. +..+.+. . ..-. .+... ++|.++++-...+.|+.++..
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~----- 370 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ----- 370 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-----
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-----
Confidence 987653 322 1222211 0 1123 45553 346666665567788888732
Q ss_pred CceEEEEeCc-----cc---c------cccCeEEEEEcC-CCCEEEEecCCCeEEEEECC
Q psy4869 567 ERCVKVMSGH-----QH---N------FEKNLLRCAWSV-SGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 567 ~~~v~~~~~h-----~~---~------~~~~i~~v~~sp-dg~~Lasgs~Dg~V~iwd~~ 611 (2435)
+. +..+.+. .. . .-.....+++.+ +|.++++-..++.|+.++++
T Consensus 371 G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 371 GR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp SE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred Cc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 22 2222221 00 0 012467889998 46666666667788877753
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.48 E-value=0.021 Score=70.38 Aligned_cols=230 Identities=10% Similarity=0.039 Sum_probs=142.8
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCce-EEEEeccCccccccCcccCCC
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEKGQR-IKKMKGHSTFVNSCDPVRRGQ 460 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~-v~~l~~h~~~v~sv~~~~~~~ 460 (2435)
...|+..++.+..............+..++|++.+..|+-+ ...+.|+.+++..+.. ...+.........+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 45788888765421111111112356789999865555544 4567899999876532 122222223455677776677
Q ss_pred eEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCCEEEE
Q psy4869 461 LLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDTVTGL 537 (2435)
Q Consensus 461 ~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~V~~i 537 (2435)
.++++-...+.|.++++......... ........++++|.+.+|+.... .+.|..+++........+...-..-+.|
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 78888777889999998765433333 34456789999998777777663 5789999886433322223333456899
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEE
Q psy4869 538 SLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIA 616 (2435)
Q Consensus 538 ~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~ 616 (2435)
+|+|++..|+.+. ..+.|..+|+.. ........+. ......+++. .+.++.+-...+.|..+|..+|+..
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG----~~~~~~~~~~----~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDG----TNRQAVVKGS----LPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS----CSCEEEECSC----CSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCC----CceEEEecCC----CCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCce
Confidence 9999777666554 578899999863 1111112211 1234566664 3455555666788999998888766
Q ss_pred EEecC
Q psy4869 617 YKLPG 621 (2435)
Q Consensus 617 ~~l~~ 621 (2435)
..+..
T Consensus 243 ~~i~~ 247 (318)
T 3sov_A 243 REIHS 247 (318)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 65543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.026 Score=72.78 Aligned_cols=236 Identities=9% Similarity=0.092 Sum_probs=141.8
Q ss_pred EEEEECCC--CCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC----C-eEEEEECCCCc
Q psy4869 366 FCSKYHPD--GQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD----Q-TLAVWDLEKGQ 438 (2435)
Q Consensus 366 ~~l~fspd--g~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D----g-~I~vwd~~tg~ 438 (2435)
..++|+|+ +..|+.+...+.|+.+|..+... ..+.........|+|+++|+ |+.+... . .+...+...+.
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v--~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV--DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEE--EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEE--EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 46889984 44555555558999999855432 23334456789999999999 5554432 1 23344433222
Q ss_pred e-EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee---cCcccEEEEEECCCCCEEEEEe-cCCeE
Q psy4869 439 R-IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM---NNTYQVTSVAFNDTAECVLTGG-IDNDI 513 (2435)
Q Consensus 439 ~-v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~---~~~~~v~sv~~sp~g~~l~sgs-~dg~V 513 (2435)
. ...+. .......+++.+.+..++++-..++.|+.+|..++.....+ ........++|+|+|++|+++. ..+.|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 11121 23345667778855566666667889999999866552222 1222334799999999766665 46889
Q ss_pred EEEECC--CCcE--EEEEecC---------------CCCEEEEEE---------cCCCCEEEEEECCCcEEEEEcCCCCC
Q psy4869 514 KMWDLR--TNSV--VQKLRGH---------------SDTVTGLSL---------SPDGSYILSNAMDNTVRIWDIRPYVP 565 (2435)
Q Consensus 514 ~lwD~~--s~~~--v~~l~~h---------------~~~V~~i~~---------spdg~~las~s~Dg~I~lWdl~~~~~ 565 (2435)
+.+|.. +++. ...+.+. -.....+++ .++|+++++-...++|+.++..
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~---- 373 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE---- 373 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT----
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC----
Confidence 998865 3321 1222221 123577999 7777777777778889998843
Q ss_pred CCceEEEEeCccc--------c------cccCeEEEEEc-CCCCEEEEecCCCeEEEEECC
Q psy4869 566 GERCVKVMSGHQH--------N------FEKNLLRCAWS-VSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 566 ~~~~v~~~~~h~~--------~------~~~~i~~v~~s-pdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
+ .+.++.+... . .-.....+++. ++|.++++=..++.|+.++++
T Consensus 374 -G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 374 -G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 2 2333332210 0 01235678888 677766666667778777654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.013 Score=75.79 Aligned_cols=242 Identities=11% Similarity=0.081 Sum_probs=143.4
Q ss_pred CeeEEEEcc-CCCEEEEEeC-CCeEEEEECCCCceEEEEeccC---ccccccCc-------ccCCCeEEEEEeCCC----
Q psy4869 407 AVMDLKFST-DGCHIFTCST-DQTLAVWDLEKGQRIKKMKGHS---TFVNSCDP-------VRRGQLLIASGSDDC---- 470 (2435)
Q Consensus 407 ~V~~l~~s~-dg~~L~s~s~-Dg~I~vwd~~tg~~v~~l~~h~---~~v~sv~~-------~~~~~~llasgs~Dg---- 470 (2435)
....|+|+| +...|+.+.. .+.|++.|++++.....+.... .....++| .+++..++++-..++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 4555665554 4679999988776655443322 24567778 888876776655542
Q ss_pred --eEEEEeCCC-Ccce-----EeecCcccEEEEEECCCCCEEE-EEecCCeEEEEECC-------CCcE-----------
Q psy4869 471 --TVKVWDPRK-KNQA-----VSMNNTYQVTSVAFNDTAECVL-TGGIDNDIKMWDLR-------TNSV----------- 523 (2435)
Q Consensus 471 --~I~vwD~~~-~~~~-----~~~~~~~~v~sv~~sp~g~~l~-sgs~dg~V~lwD~~-------s~~~----------- 523 (2435)
.|.+++... +... ..+..-.....++++|++..|+ +-..++.|+.||+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 366776443 1221 1222222456788999555544 55567889999987 5543
Q ss_pred EEEE-e-cCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCCCCCce--EEEEeCc---c---------cccccCeE-
Q psy4869 524 VQKL-R-GHSDTVTGLSLSPDGSYILSN-AMDNTVRIWDIRPYVPGERC--VKVMSGH---Q---------HNFEKNLL- 585 (2435)
Q Consensus 524 v~~l-~-~h~~~V~~i~~spdg~~las~-s~Dg~I~lWdl~~~~~~~~~--v~~~~~h---~---------~~~~~~i~- 585 (2435)
...+ . +....-+.|+|+|+|+.|+.+ +...+|+.+|.... .... ...+-+. . ..+ ....
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~--~~~~~~~~~~aG~~g~~G~~DG~~~~a~f-~~P~~ 376 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI--KKEFITPYNFVGGYKQSGYRDDVGTEARM-NNPCQ 376 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT--TTEECCCEEEEEBTTBCCCBCCBGGGCBC-SSEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC--cceecccEEecCCCCCCcccCCccccccc-CCCeE
Confidence 2222 1 223456899999999965554 46788888776421 1110 0122221 0 011 1223
Q ss_pred EEEEc-------CCCCEEEEecCCCeEEEEECCCCcEEEEecCC------------------------CCCeeEEEEcCC
Q psy4869 586 RCAWS-------VSGLYVTAGSADKCVYIWDTTTRRIAYKLPGH------------------------NGSVNDVQFHPK 634 (2435)
Q Consensus 586 ~v~~s-------pdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h------------------------~~~V~~l~fspd 634 (2435)
.+... .+|.++++=..+.+|+.++ .+|.. ..+.|. -.....|++.++
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 44554 5677777777888999999 45643 333221 123678888886
Q ss_pred -CCEEEEEECCCcEEEecCC
Q psy4869 635 -EPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 635 -~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+.++++=.....|+.++++
T Consensus 455 ~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp TTEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEECC
Confidence 6555555566788877775
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0024 Score=88.81 Aligned_cols=197 Identities=12% Similarity=0.108 Sum_probs=114.9
Q ss_pred cEEEEEEC-CCCCEEEEEec-CC----eEEEEECCCC-cEEE-EEecCCCCEEEEEEcCCCCEEEEEECC-----CcEEE
Q psy4869 491 QVTSVAFN-DTAECVLTGGI-DN----DIKMWDLRTN-SVVQ-KLRGHSDTVTGLSLSPDGSYILSNAMD-----NTVRI 557 (2435)
Q Consensus 491 ~v~sv~~s-p~g~~l~sgs~-dg----~V~lwD~~s~-~~v~-~l~~h~~~V~~i~~spdg~~las~s~D-----g~I~l 557 (2435)
.+...+|+ |||++|+.+.. +| .|+++|+.++ +.+. .+.. ....+.|+|||+.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 46678999 99998886543 23 4999999998 6321 1111 12467899999988877765 25777
Q ss_pred EEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEec---CCCeEEEEECCCC--cE--EEEecCCCCCeeEEE
Q psy4869 558 WDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGS---ADKCVYIWDTTTR--RI--AYKLPGHNGSVNDVQ 630 (2435)
Q Consensus 558 Wdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs---~Dg~V~iwd~~s~--~~--~~~l~~h~~~V~~l~ 630 (2435)
+++.... ......+.... ......+.|+|||++|+..+ ....|+++|+.++ +. .....+..+....+.
T Consensus 252 ~~lgt~~--~~~~lv~~~~~---~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 252 HVMGKLQ--SEDVCLYEEHN---PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EETTSCG--GGCEEEEECCC---TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred EECCCCc--hhcEEEEecCC---CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 7776421 12223332211 12356789999999988765 3457889999876 33 233334455666777
Q ss_pred EcCCCCEEEEEECC--C--cEEEecCCCccccCcc-eeecCce-eeEEEecCCCCeEEEEecCCceEEeeeec
Q psy4869 631 FHPKEPIIMSASSD--K--TIYLGESPLHCDKAGS-ILRSGKG-RVHTMVNDKHRQILCCHGNDNVVDLFYFC 697 (2435)
Q Consensus 631 fspd~~~Lasgs~D--g--~I~vWd~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 697 (2435)
|+..+.+++....+ + .|+.++++.. ..+.. ++..... .+..+... .+.+++....+....++.+.
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence 66544455555444 3 4555555421 22233 3333222 22333222 45666666666666666654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.087 Score=72.66 Aligned_cols=231 Identities=8% Similarity=-0.004 Sum_probs=145.0
Q ss_pred CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEE-EeCCCeEEEEECCCC----ceEEEEeccCccccccCcc
Q psy4869 382 YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFT-CSTDQTLAVWDLEKG----QRIKKMKGHSTFVNSCDPV 456 (2435)
Q Consensus 382 ~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s-~s~Dg~I~vwd~~tg----~~v~~l~~h~~~v~sv~~~ 456 (2435)
....|+..++..... ..+......+..|+|++....|+. -...+.|+.+++... .....+.........+++.
T Consensus 402 n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 345677777764322 223334567789999985555554 445678999998652 2233333344456677777
Q ss_pred cCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCC
Q psy4869 457 RRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDT 533 (2435)
Q Consensus 457 ~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~ 533 (2435)
+.+..++++-...+.|.+.++........+ ........|+++|.+.+|+.... .+.|...++........+...-..
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~ 559 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 559 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence 777788888888899999999865543333 24456889999998777777653 378999998755444444444457
Q ss_pred EEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 534 VTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 534 V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
.++|++++.+.+|+.+. ....|...|+.. ............ . .....+++. .++++++-...+.|...|..+
T Consensus 560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG----~~~~~v~~~~~~-l-~~P~glav~-~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 560 PNGITLDLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEKR-L-AHPFSLAVF-EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS----CSCEEEEECTTT-T-SSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred ceEEEEecCCCeEEEEeCCCCcEEEEecCC----CceEEEecCCCc-c-CCCCEEEEe-CCEEEEEECCCCEEEEEeCCC
Confidence 89999998777766654 467888888862 222222222110 1 123455553 234444555667888888888
Q ss_pred CcEEEEecC
Q psy4869 613 RRIAYKLPG 621 (2435)
Q Consensus 613 ~~~~~~l~~ 621 (2435)
|+.+..+..
T Consensus 633 G~~~~~l~~ 641 (791)
T 3m0c_C 633 GSDVNLLAE 641 (791)
T ss_dssp CCCCEEEEC
T ss_pred CcceEEeec
Confidence 766665543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.25 E-value=0.11 Score=63.88 Aligned_cols=233 Identities=11% Similarity=0.012 Sum_probs=139.2
Q ss_pred EEEEecCCcEEEEeCCCCc--eeEEEeCCCeEEEEEEecCCCEEEE-EeCCCeEEEEEccCCceee-cccccccceeEEE
Q psy4869 899 ALVSACASQVKIWNRPSLS--CLRTIDTGSYALSVCFVPGDRHVLV-GTKDGRLLIVDIGAGEILE-DIPAHSQELWSVA 974 (2435)
Q Consensus 899 ~la~g~~~~V~Iwd~~~~~--~~~~l~~~~~v~~vafspdg~~Lav-g~~dg~V~vwd~~sg~~v~-~~~~h~~~V~sv~ 974 (2435)
+|..+....|+.+|+.... ....+..-..+.+++|.+.++.|.. -...+.|..+++..+.... .+.........++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 4555556788888888764 2233333345668999986666654 4467899999987663211 1111122345666
Q ss_pred EecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCE
Q psy4869 975 MLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1054 (2435)
Q Consensus 975 ~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 1054 (2435)
+.+.+ +..+++-...+.|.+.+++.... ..+ ..........++++|.+..
T Consensus 86 vd~~~---------g~ly~~d~~~~~I~~~~~dG~~~---------------~~l------~~~~~~~P~giavdp~~g~ 135 (318)
T 3sov_A 86 CDWLG---------EKLYWTDSETNRIEVSNLDGSLR---------------KVL------FWQELDQPRAIALDPSSGF 135 (318)
T ss_dssp EETTT---------TEEEEEETTTTEEEEEETTSCSC---------------EEE------ECSSCSSEEEEEEEGGGTE
T ss_pred EEcCC---------CeEEEEECCCCEEEEEECCCCcE---------------EEE------EeCCCCCccEEEEeCCCCE
Confidence 66432 23555555667888888753110 000 0012245789999998888
Q ss_pred EEEEEC--CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEeccCCCEEEEE
Q psy4869 1055 LAVSLL--DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131 (2435)
Q Consensus 1055 Lavg~~--dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~ 1131 (2435)
|+.... .+.|..++.+.......+...-..-..|+|++++..|+.+. ..+.|..+|++.......+.........++
T Consensus 136 ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla 215 (318)
T 3sov_A 136 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT 215 (318)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE
T ss_pred EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 888774 47788888765333222333334568999999777666665 467899999864332222232334556777
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1132 fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
+. .+..+++-...+.|..++..+++....+
T Consensus 216 v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 216 LF-EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred Ee-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 75 3344445455678888888766654443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.06 Score=69.52 Aligned_cols=247 Identities=8% Similarity=0.028 Sum_probs=148.1
Q ss_pred cEEEEEECCC-C-CEEEEEeCCCeEEEEecCCceeeEEEeeC--CCCCeeEEEE-------ccCCCEEEEEeCCC-----
Q psy4869 364 EIFCSKYHPD-G-QYIASSGYDRQIFIWSVYGECENIGVMSG--HTGAVMDLKF-------STDGCHIFTCSTDQ----- 427 (2435)
Q Consensus 364 ~V~~l~fspd-g-~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~--h~~~V~~l~~-------s~dg~~L~s~s~Dg----- 427 (2435)
.-..|+|+|. + +++++....+.|++.|..........-.+ .......|+| +++++.|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3567899983 4 44444444567888888764332211111 2235899999 99999777776543
Q ss_pred --eEEEEECCC-CceE-----EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCC-------CCcc----------
Q psy4869 428 --TLAVWDLEK-GQRI-----KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR-------KKNQ---------- 482 (2435)
Q Consensus 428 --~I~vwd~~t-g~~v-----~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~-------~~~~---------- 482 (2435)
.|.+++... |... ..+.. ......++..|.+..++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366776444 2221 22221 12345677788777888888889999999987 4443
Q ss_pred ----eEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEEC--CCCcE--EEEEecC---C------------CCEE-EE
Q psy4869 483 ----AVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDL--RTNSV--VQKLRGH---S------------DTVT-GL 537 (2435)
Q Consensus 483 ----~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~--~s~~~--v~~l~~h---~------------~~V~-~i 537 (2435)
+...........++|+|+|++|+.+. ....|+.+|. ..+.. ...+-+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 12223344568999999999766665 5678888554 44432 1222221 1 1234 45
Q ss_pred EEc-------CCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccc--------------c------cccCeEEEEEc
Q psy4869 538 SLS-------PDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH--------------N------FEKNLLRCAWS 590 (2435)
Q Consensus 538 ~~s-------pdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~--------------~------~~~~i~~v~~s 590 (2435)
... ++|.++++=....+|+.++.. + .+.++-+... . .-.....+++.
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-----G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-----G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECTT-----C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeCC-----C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 554 566666666678899998843 2 3444433210 0 01235678888
Q ss_pred CC-CCEEEEecCCCeEEEEECCCCcEEE
Q psy4869 591 VS-GLYVTAGSADKCVYIWDTTTRRIAY 617 (2435)
Q Consensus 591 pd-g~~Lasgs~Dg~V~iwd~~s~~~~~ 617 (2435)
++ |.++++=..+..|+.++++....+.
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 86 7777777777888888876554443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.029 Score=68.53 Aligned_cols=198 Identities=14% Similarity=0.283 Sum_probs=127.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccC----CC---eEEEEEeC--CCeEEEEeCC--CCcceE
Q psy4869 416 DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR----GQ---LLIASGSD--DCTVKVWDPR--KKNQAV 484 (2435)
Q Consensus 416 dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~----~~---~llasgs~--Dg~I~vwD~~--~~~~~~ 484 (2435)
...+++....++-+.+||+ +|+.+..+.. ..++.++..+. +. ..+++.-. +++|.+|++. ++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3456676777889999999 8999988864 34566665552 11 12344444 6899999663 332 33
Q ss_pred eec-------Cc-ccEEEEEE--CCC-CC-EEEEEecCCeEEEEECC-------CCcEEEEEecCCCCEEEEEEcCCCCE
Q psy4869 485 SMN-------NT-YQVTSVAF--NDT-AE-CVLTGGIDNDIKMWDLR-------TNSVVQKLRGHSDTVTGLSLSPDGSY 545 (2435)
Q Consensus 485 ~~~-------~~-~~v~sv~~--sp~-g~-~l~sgs~dg~V~lwD~~-------s~~~v~~l~~h~~~V~~i~~spdg~~ 545 (2435)
... .. ..+..+++ +|. ++ ++++...+|.+..|++. +.+.++++... +.+-.|...+...+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCe
Confidence 331 11 55667777 774 44 68888889999999883 34667777643 57889999999999
Q ss_pred EEEEECCCcEEEEEcCCCCC-CCceEEEEeCcccccccCeEEEEE--cCCCC-EEEEec-CCCeEEEEECC-CCcEEEEe
Q psy4869 546 ILSNAMDNTVRIWDIRPYVP-GERCVKVMSGHQHNFEKNLLRCAW--SVSGL-YVTAGS-ADKCVYIWDTT-TRRIAYKL 619 (2435)
Q Consensus 546 las~s~Dg~I~lWdl~~~~~-~~~~v~~~~~h~~~~~~~i~~v~~--spdg~-~Lasgs-~Dg~V~iwd~~-s~~~~~~l 619 (2435)
|+.+-.|.-|-.+|.+.... ..+.+..+... .....+..+++ .++|+ ||++.+ .++.+.+||.+ +.+.+..+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g--~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR--HLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSS--SBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCC--ccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 99999986655555443221 12344333211 12224566666 56666 666655 67899999996 66776665
Q ss_pred c
Q psy4869 620 P 620 (2435)
Q Consensus 620 ~ 620 (2435)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0096 Score=82.80 Aligned_cols=188 Identities=12% Similarity=0.149 Sum_probs=113.2
Q ss_pred EEEEeC-CCCcEEEEe--cCC----cEEEEEcCcc-ccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcC---
Q psy4869 28 FVTLKN-QEGRFLATG--ASE----DVIIWDLRLA-EKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN--- 96 (2435)
Q Consensus 28 ~~~~~~-~~g~~lasg--~~g----~V~IwD~~~~-~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~--- 96 (2435)
....|| |||++||-+ .+| .|.++|+.++ +... . .+.+ ....+.|+|||+.|+....+
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----~----~~~~---~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-----D----KVSG---TNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-----C----CEEE---ECSCCEECSSTTEEEEEEECTTC
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-----c----cccC---ceeeEEEecCCCEEEEEEECCCC
Confidence 345779 999999975 233 3999999877 5211 0 0111 12358899999988877664
Q ss_pred --CeEEEEECCCCC--eEEEecC-CCCCEEEEEEcCCCCEEEEEeC---CCCEEEEEccCCe-eE--EEE-ecCCCcEEE
Q psy4869 97 --GSLKTFSLDTTD--VISTFTG-HKSAITVIQYDPLGHRLATGSK---DTDIVLWDVVAEC-GL--HRL-SGHKGVITD 164 (2435)
Q Consensus 97 --G~i~i~d~~~~~--~~~~l~g-H~~~V~~l~f~p~g~~laSgs~---Dg~I~iWd~~~~~-~~--~~l-~gH~~~V~~ 164 (2435)
..|..+++.+++ .+..+.+ +......+.|+|||++|+..+. ...|.++|+.+.. .. ..+ .+..+...+
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 258888888764 2333332 3345678999999998876553 3458888987652 12 333 345566677
Q ss_pred EEEeecCCCcEEEEEeCC--C--cEEEEeccCCccccc-cccccc--eEEEEEEEeCCC-eEEEeeCCCcEEEEE
Q psy4869 165 IRFMSQPGHHFVVSSAKD--T--FVKIWDADTGDCFKT-MAAHLT--EVWGVCVMREDS-YLISGSNDAELKVWN 231 (2435)
Q Consensus 165 v~~~~~~~~~~l~S~s~D--g--~I~iWd~~tg~~~~~-~~~h~~--~V~~l~~~p~~~-~l~s~s~Dg~v~vwd 231 (2435)
+.|+ .++.+++....| + .|.++|+.++..... +..|.. .+..+.+ .+. ++++...|+..++|-
T Consensus 325 ~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 325 VQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEE
T ss_pred Eeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEE
Confidence 7764 355566666555 3 455566655323334 333433 3344444 444 455777778655553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.065 Score=65.50 Aligned_cols=199 Identities=15% Similarity=0.243 Sum_probs=128.8
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCC----CC---EEEEEEC---CCcEEEEEcc--CCceeE
Q psy4869 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYD----ST---LIATGSG---DRTVKVWGLD--YGDCHK 1118 (2435)
Q Consensus 1051 dg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spd----g~---~L~Sgs~---Dg~I~vWd~~--t~~~~~ 1118 (2435)
...+++.....+-+.+||+ +++.+..+.. +.++.++.-|+ |+ ++++... +++|.+|++. ++ .+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence 3455666666788999999 7788888764 56777777663 21 3344444 5789999773 33 344
Q ss_pred EEec------cC-CCEEEEEE--ccC-CC-EEEEEeCCCcEEEEeCCCc-ceeEEEEEEEeecccccCeEEEEEeCCCCE
Q psy4869 1119 SLLA------HE-DSVTGVTF--VPK-TH-YFFTTSKDGRVKQWDADNF-ERIVTLHFFISLYGHKLPVLSLDMSYDSTL 1186 (2435)
Q Consensus 1119 ~l~~------h~-~~V~~v~f--sp~-~~-~l~s~s~Dg~V~iwD~~~~-~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 1186 (2435)
.+.. .. ..+..+++ ++. +. ++++...++.+..|++... ......+..+.+ ...+.+-.|...+...+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcceEEEcCCCCe
Confidence 4421 12 56677888 664 43 6888889999999998432 111111222222 23457888899988899
Q ss_pred EEEEeCCCcEEEEEcc-----CCceeeEee-cc-CCCEEEEEEee--CCC-EEEEEE-CCCcEEEEECC-CCceEEEEee
Q psy4869 1187 IATGSGDRTVKVWGLD-----YGDCHKSLL-AH-EDSVTGVTFVP--KTH-YFFTTS-KDGRVKQWDAD-NFERIVTLHF 1254 (2435)
Q Consensus 1187 l~sgs~Dg~V~iwd~~-----t~~~~~~~~-~h-~~~V~~i~~sp--d~~-~lvsgs-~Dg~I~vwD~~-~~~~v~~~~~ 1254 (2435)
|+.+-.+..|..++.+ +++.+..+. ++ ...+..|.+.+ +++ +|++++ .+.++.+||.. ..+.+..+.+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRI 273 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence 9999998777777754 244454442 22 24788898854 445 677777 67899999997 5555555543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.069 Score=64.74 Aligned_cols=203 Identities=10% Similarity=0.054 Sum_probs=130.2
Q ss_pred EEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCeEEEE-Eec----CC--cCEEEEEE---cCCCCEEEEEE----------
Q psy4869 1043 VLCARVSPDSKLLAVSL-LDTTVKIFFLDTFKFFIS-LYG----HK--LPVLSLDM---SYDSTLIATGS---------- 1101 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~-~dg~V~i~d~~~~~~~~~-l~~----h~--~~V~sl~~---spdg~~L~Sgs---------- 1101 (2435)
..+++|++....|.+++ ..+.|..|+...+..... +.+ .. ..+..|.| .++++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34678988777777776 689999999875543333 222 11 13689999 68877777544
Q ss_pred ---CCCcEEEEEcc---CCceeEEEe--cc-----------CCCEEEEEEccCCCEEEEEeCC-CcEEEEeCCCcceeEE
Q psy4869 1102 ---GDRTVKVWGLD---YGDCHKSLL--AH-----------EDSVTGVTFVPKTHYFFTTSKD-GRVKQWDADNFERIVT 1161 (2435)
Q Consensus 1102 ---~Dg~I~vWd~~---t~~~~~~l~--~h-----------~~~V~~v~fsp~~~~l~s~s~D-g~V~iwD~~~~~~~~~ 1161 (2435)
.+..|..+|+. +++.+.... .. ......++..++|+..++++.. +.|..++.... ....
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence 26779999999 888776654 11 1258899999999999988888 88887776643 2222
Q ss_pred EEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce--eeEee--cc---CCCEEEE-EEeeCCCE-EEEE
Q psy4869 1162 LHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC--HKSLL--AH---EDSVTGV-TFVPKTHY-FFTT 1232 (2435)
Q Consensus 1162 ~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~--~~~~~--~h---~~~V~~i-~~spd~~~-lvsg 1232 (2435)
+.............+.|+++|+|..|++...+|.+..+|+..... +. +. +. -.....| ..-.+++. +++.
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~ 252 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGA 252 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEEc
Confidence 211000112234577999999999999887799999999884322 11 11 11 1223443 22237777 4444
Q ss_pred ECCCcEEEEECCCCc
Q psy4869 1233 SKDGRVKQWDADNFE 1247 (2435)
Q Consensus 1233 s~Dg~I~vwD~~~~~ 1247 (2435)
...+.+.+.+....+
T Consensus 253 ~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 253 RAPYAISFRSWDNWK 267 (334)
T ss_dssp ETTEEEEEECSSTTS
T ss_pred CCCCEEEEECCCCcc
Confidence 456666666554433
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.21 Score=68.85 Aligned_cols=241 Identities=10% Similarity=-0.076 Sum_probs=145.9
Q ss_pred EEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEE-eCCCeEEEEEccCC----ceeecc
Q psy4869 889 RALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG-TKDGRLLIVDIGAG----EILEDI 963 (2435)
Q Consensus 889 ~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg-~~dg~V~vwd~~sg----~~v~~~ 963 (2435)
+|.++... .+|.......|+..++........+.....+.+|+|.+.+..|+.. ...++|+.+++... .....+
T Consensus 388 ~C~~~~~~-p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi 466 (791)
T 3m0c_C 388 ACKAVGSI-AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 466 (791)
T ss_dssp CCEETTSC-CEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE
T ss_pred eeeecccc-cccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE
Confidence 34444332 3555556677888888877766666666677899999966666654 46788999988753 222222
Q ss_pred cccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCE
Q psy4869 964 PAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV 1043 (2435)
Q Consensus 964 ~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 1043 (2435)
.........|++...+ +..+++-...+.|.+.+++.... .++ ....-..+
T Consensus 467 ~~~l~~P~GLAvD~~~---------~~LY~tD~~~~~I~v~~ldG~~~---------------~~l------~~~~l~~P 516 (791)
T 3m0c_C 467 SRDIQAPDGLAVDWIH---------SNIYWTDSVLGTVSVADTKGVKR---------------KTL------FRENGSKP 516 (791)
T ss_dssp CSSCSCCCEEEEETTT---------TEEEEEETTTTEEEEEETTSSSE---------------EEE------EECTTCCE
T ss_pred ecCCCCcceeeeeecC---------CcEEEEecCCCeEEEEeCCCCeE---------------EEE------EeCCCCCc
Confidence 2222344566666543 24556656678888888753210 000 00112457
Q ss_pred EEEEEcCCCCEEEEEECC--CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCceeEEE
Q psy4869 1044 LCARVSPDSKLLAVSLLD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHKSL 1120 (2435)
Q Consensus 1044 ~~l~~spdg~~Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~-Dg~I~vWd~~t~~~~~~l 1120 (2435)
..|+++|.+.+|+..... +.|.+.+++.......+...-.....|++.+.+..|+.+.. .+.|...+++.......+
T Consensus 517 ~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~ 596 (791)
T 3m0c_C 517 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 596 (791)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe
Confidence 899999998888888643 67888888765554445544467889999987777776654 567888888644433333
Q ss_pred ec--cCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCcceeEEE
Q psy4869 1121 LA--HEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1121 ~~--h~~~V~~v~fsp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
.. .-....+|++. +..|+.+. ..+.|...|..+++.+..+
T Consensus 597 ~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 597 EDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp ECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 32 12234566664 33455444 4567777777666554443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.087 Score=63.86 Aligned_cols=204 Identities=9% Similarity=0.090 Sum_probs=130.7
Q ss_pred eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe-ecC-------cccEEEEEE---CCCCCEEEEEec---
Q psy4869 444 KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS-MNN-------TYQVTSVAF---NDTAECVLTGGI--- 509 (2435)
Q Consensus 444 ~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~-~~~-------~~~v~sv~~---sp~g~~l~sgs~--- 509 (2435)
........+++|.+.+..++++.-..+.|..||...+..... +.. ...+..+.| .|+++++++...
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 333444556778777777777777899999999975543322 221 124689999 688888876542
Q ss_pred ----------CCeEEEEECC---CCcEEEEEe--c-----------CCCCEEEEEEcCCCCEEEEEECC-CcEEEEEcCC
Q psy4869 510 ----------DNDIKMWDLR---TNSVVQKLR--G-----------HSDTVTGLSLSPDGSYILSNAMD-NTVRIWDIRP 562 (2435)
Q Consensus 510 ----------dg~V~lwD~~---s~~~v~~l~--~-----------h~~~V~~i~~spdg~~las~s~D-g~I~lWdl~~ 562 (2435)
+..|..||+. +++.+.... . -......++..++|+..++++.- +.|...+..
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd- 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD- 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-
Confidence 6789999999 777765543 1 11358899999999999998887 777666654
Q ss_pred CCCCCceEEEEe-Ccc-cccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcE--EEEec--CC---CCCeeEE-EEc
Q psy4869 563 YVPGERCVKVMS-GHQ-HNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI--AYKLP--GH---NGSVNDV-QFH 632 (2435)
Q Consensus 563 ~~~~~~~v~~~~-~h~-~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~--~~~l~--~h---~~~V~~l-~fs 632 (2435)
++.+..+. ... .........+++.|+|+.|++...+|.|..+|+..... +. +. +. -.....| .--
T Consensus 168 ----G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~ 242 (334)
T 2p9w_A 168 ----GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVP 242 (334)
T ss_dssp ----SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEE
T ss_pred ----CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccc
Confidence 22233222 111 11122456899999999888886799999999885433 21 11 22 1223343 333
Q ss_pred CCCCE-EEEEECCCcEEEecCC
Q psy4869 633 PKEPI-IMSASSDKTIYLGESP 653 (2435)
Q Consensus 633 pd~~~-Lasgs~Dg~I~vWd~~ 653 (2435)
.+++. |++.+..+.+.+.+.+
T Consensus 243 ~~G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 243 VGNESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp ETTEEEEEEEETTEEEEEECSS
T ss_pred cCCEEEEEEcCCCCEEEEECCC
Confidence 46666 5555566666665554
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.26 Score=61.53 Aligned_cols=227 Identities=9% Similarity=0.043 Sum_probs=122.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee---CCCCCeeEEEEccC---CCEEEEEeC-C-----CeEEE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS---GHTGAVMDLKFSTD---GCHIFTCST-D-----QTLAV 431 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~---~h~~~V~~l~~s~d---g~~L~s~s~-D-----g~I~v 431 (2435)
.-..++|.|+|+++++ ..+|.|++++ ......+..+. ........|+|+|| +..|+.+.. + +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 3468999999985554 6679999998 44322222221 22457899999998 556665543 2 67888
Q ss_pred EECCCCc-----eE-EEEe---ccCccccccCcccCCCeEEEEEeC------------CCeEEEEeCCCC----------
Q psy4869 432 WDLEKGQ-----RI-KKMK---GHSTFVNSCDPVRRGQLLIASGSD------------DCTVKVWDPRKK---------- 480 (2435)
Q Consensus 432 wd~~tg~-----~v-~~l~---~h~~~v~sv~~~~~~~~llasgs~------------Dg~I~vwD~~~~---------- 480 (2435)
|+...+. .+ ..+. +.......+.|.+++..++..+.. .+.|.-+|....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 8876442 11 1233 112234678889988544444321 256666665431
Q ss_pred ----cceEeecCcccEEEEEECC-CCCEEEEEecCCe--------EEEEECCC----------------CcEEEEEecCC
Q psy4869 481 ----NQAVSMNNTYQVTSVAFND-TAECVLTGGIDND--------IKMWDLRT----------------NSVVQKLRGHS 531 (2435)
Q Consensus 481 ----~~~~~~~~~~~v~sv~~sp-~g~~l~sgs~dg~--------V~lwD~~s----------------~~~v~~l~~h~ 531 (2435)
..+....+ .....++|+| +|+++++-...+. |.+..... ..++..+. +.
T Consensus 190 ~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~ 267 (352)
T 2ism_A 190 RGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QG 267 (352)
T ss_dssp TTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TC
T ss_pred CCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CC
Confidence 11212222 2366789999 5665554332222 33332111 01223332 23
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC--CceEEEEeCcccccccCeEEEEEcCCCCEEEEe
Q psy4869 532 DTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG--ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG 599 (2435)
Q Consensus 532 ~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~--~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg 599 (2435)
.....++| .+|..+++.-..+.|...++...... ......+-. ....+..+++.|||.++++.
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~----~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS----GFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE----SSCCEEEEEECTTSCEEEEE
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc----cCCCeeEEEECCCCcEEEEE
Confidence 34567788 46776666656777877777532110 000111111 11367889999998766654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=1.4 Score=54.75 Aligned_cols=259 Identities=11% Similarity=0.096 Sum_probs=158.5
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeE
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLL 462 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~l 462 (2435)
+..|.|-|+.+.......-..- -+.-.+|..+.|+.-. ...+.+||+++.+.++.+.-.. .|.-..|......-
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCC----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEE
T ss_pred CCeEEEEECCCCCcceeccccc----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEE
Confidence 3478888887644332222111 2233456555555444 6799999999998887776544 34445555554333
Q ss_pred EEEEeCCCeEEEEeCCCC-cceEeec-----CcccEEEEEECCCCCEEEEEe-------cCCeEEEEECCCCcEEEEEec
Q psy4869 463 IASGSDDCTVKVWDPRKK-NQAVSMN-----NTYQVTSVAFNDTAECVLTGG-------IDNDIKMWDLRTNSVVQKLRG 529 (2435)
Q Consensus 463 lasgs~Dg~I~vwD~~~~-~~~~~~~-----~~~~v~sv~~sp~g~~l~sgs-------~dg~V~lwD~~s~~~v~~l~~ 529 (2435)
++ .+..|..|++... .+...+. ....|.....+++.++++..+ -.|.+.+|..+.+. -+.++|
T Consensus 121 lV---T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 196 (494)
T 1bpo_A 121 LV---TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (494)
T ss_dssp EE---CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred EE---cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence 33 2467999999743 3433332 245688888899999887543 24778899987663 356677
Q ss_pred CCCCEEEEEEcCCC---CEEEEEECC---CcEEEEEcCCCC-C----CCceEEEEeCcccccccCeEEEEEcCCCCEEEE
Q psy4869 530 HSDTVTGLSLSPDG---SYILSNAMD---NTVRIWDIRPYV-P----GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA 598 (2435)
Q Consensus 530 h~~~V~~i~~spdg---~~las~s~D---g~I~lWdl~~~~-~----~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Las 598 (2435)
|.+.-..+.+.-+. +.++-+... +.++|-++.... . ..+.+..+.... ...+-...+..++....++.
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe-~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-AQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT-STTCCEEEEEEETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc-cccCceeEEEecccCCEEEE
Confidence 76555444433221 234444442 789999986421 0 112222222222 22334567888888888999
Q ss_pred ecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 599 GSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 599 gs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
-..-|.|++||++++.++..-+-....|..-+-+....-++.....|.|.--.+
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence 999999999999999999877666666666565555555555555665544433
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0065 Score=83.38 Aligned_cols=240 Identities=8% Similarity=0.001 Sum_probs=137.1
Q ss_pred CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCC----CceEEEEeccCccccccCcc
Q psy4869 382 YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEK----GQRIKKMKGHSTFVNSCDPV 456 (2435)
Q Consensus 382 ~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~t----g~~v~~l~~h~~~v~sv~~~ 456 (2435)
..+.|++.++..... ..+......+..|+|++.+..|+.+. ..+.|+.+++.. ......+.........+++.
T Consensus 384 ~~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 345677777764321 12222234677899998776666654 457899999865 12211221112234456666
Q ss_pred cCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCC
Q psy4869 457 RRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDT 533 (2435)
Q Consensus 457 ~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~ 533 (2435)
+.+..++++-...+.|.++++........+. .......++++|.+.+|+.... .+.|..+++........+...-..
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~ 541 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 541 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCC
Confidence 5566677766677889999987654433332 2345678899997776666543 278888887543222222222334
Q ss_pred EEEEEEcCCCCEEE-EEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 534 VTGLSLSPDGSYIL-SNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 534 V~~i~~spdg~~la-s~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
.+.|+|+|++.+|+ +-+..+.|..+|+.. ......+.... . ......+++..+ .++++-...+.|..+|..+
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG----~~~~~~~~~~~-~-~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEK-R-LAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSSS----SCCEEECCCSS-S-CSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccCC----CceEEEEecCC-c-CCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 57899999765555 445677899999863 11111111110 0 012233444433 4444555678999999988
Q ss_pred CcEEEEecCCCCCeeEEE
Q psy4869 613 RRIAYKLPGHNGSVNDVQ 630 (2435)
Q Consensus 613 ~~~~~~l~~h~~~V~~l~ 630 (2435)
++.+..+......+..|+
T Consensus 615 G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 615 GSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EEEEECCCTTCSSCCCCC
T ss_pred CCceEEeecCCCCCcEEE
Confidence 888877754333344443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=1.8 Score=53.82 Aligned_cols=240 Identities=8% Similarity=0.004 Sum_probs=142.4
Q ss_pred CCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeC
Q psy4869 1103 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY 1182 (2435)
Q Consensus 1103 Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 1182 (2435)
+..|.|.|+..+..+.+.... -.+.-.+|..+.++.-. ...+.+||+++..++.... ...+|.--.|-.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~-------~~e~VvfWkWis 115 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-------MTDDVTFWKWIS 115 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE-------CSSCCCEEEEEE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee-------cCCCceEEEecC
Confidence 336888888876544332211 12445677777666554 6899999999987776653 234565556653
Q ss_pred CCCEEEEEeCCCcEEEEEccC-CceeeEeeccC----CCEEEEEEeeCCCEEEEEEC-------CCcEEEEECCCCceEE
Q psy4869 1183 DSTLIATGSGDRTVKVWGLDY-GDCHKSLLAHE----DSVTGVTFVPKTHYFFTTSK-------DGRVKQWDADNFERIV 1250 (2435)
Q Consensus 1183 dg~~l~sgs~Dg~V~iwd~~t-~~~~~~~~~h~----~~V~~i~~spd~~~lvsgs~-------Dg~I~vwD~~~~~~v~ 1250 (2435)
+ +.|+.. .+..|+.|++.. ..+.+.+..|. ..|..-..+++.++++..|- .|.+.+|....... .
T Consensus 116 ~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q 192 (494)
T 1bpo_A 116 L-NTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-Q 192 (494)
T ss_dssp T-TEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-E
T ss_pred C-CeEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-c
Confidence 3 344444 346799999974 34566666554 36777777888888876652 35677887765432 2
Q ss_pred EEeeCCcccc-------cCceEEEE-EEC---CCeEEEEEccccc-ccccccccccccccccceeeeeecccccccccEE
Q psy4869 1251 TLHFNPNVYL-------PLQIQVVT-GGG---DKSVKLWQLELVS-VNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1318 (2435)
Q Consensus 1251 ~~~~~~~~~~-------~~~~~lv~-g~~---d~~v~iwdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1318 (2435)
.++.+...|. +....+++ +.. .+++++-++.... .. ....+....+..........-.
T Consensus 193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~----------~~f~kk~vdv~fppe~~~DFPv 262 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN----------QPFPKKAVDVFFPPEAQNDFPV 262 (494)
T ss_dssp EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC----------CCCCCEEEECCCCTTSTTCCEE
T ss_pred hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC----------CCccceeeeeeCCcccccCcee
Confidence 2333333331 11122333 222 2788888885331 10 0000000001111112345566
Q ss_pred EEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEec
Q psy4869 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY 1366 (2435)
Q Consensus 1319 ~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~sp 1366 (2435)
++..++.-..+.+-+.-|.+++||++++.++..-+--..+|..-+...
T Consensus 263 amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~ 310 (494)
T 1bpo_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE 310 (494)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET
T ss_pred EEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccC
Confidence 788888888888999999999999999998877775555554444333
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.75 Score=57.32 Aligned_cols=228 Identities=10% Similarity=0.074 Sum_probs=125.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee---CCCCCeeEEEEccC---CCEEEEEeC----C----CeE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS---GHTGAVMDLKFSTD---GCHIFTCST----D----QTL 429 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~---~h~~~V~~l~~s~d---g~~L~s~s~----D----g~I 429 (2435)
.-..++|.|+|++++ +..+|+|+++|..+. ..+..+. ........|+++|+ +..|+.+.. + ..|
T Consensus 30 ~P~~ia~~pdG~l~V-~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLV-TERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTEEEE-EETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCeEEE-EeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 456899999998555 466799999974433 2332221 22356899999997 556655443 3 567
Q ss_pred EEEECCCC--c-----eE-EEEec-cCccccccCcccCCCeEEEEEeC------------CCeEEEEeCCCC--------
Q psy4869 430 AVWDLEKG--Q-----RI-KKMKG-HSTFVNSCDPVRRGQLLIASGSD------------DCTVKVWDPRKK-------- 480 (2435)
Q Consensus 430 ~vwd~~tg--~-----~v-~~l~~-h~~~v~sv~~~~~~~~llasgs~------------Dg~I~vwD~~~~-------- 480 (2435)
..|+...+ . .+ ..+.. .......+.|.|++..++..+.. .+.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 77877544 1 11 11221 12235678889988655544431 245666665432
Q ss_pred -cceEeecCcccEEEEEECC-CCCEEEEEecCC---eEEEEECCC----------------CcEEEEEecCCCCEEEEEE
Q psy4869 481 -NQAVSMNNTYQVTSVAFND-TAECVLTGGIDN---DIKMWDLRT----------------NSVVQKLRGHSDTVTGLSL 539 (2435)
Q Consensus 481 -~~~~~~~~~~~v~sv~~sp-~g~~l~sgs~dg---~V~lwD~~s----------------~~~v~~l~~h~~~V~~i~~ 539 (2435)
..+....+ .....++|+| +|+++++-...+ .|.+...-. ..++..+.........+.|
T Consensus 188 ~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~ 266 (354)
T 3a9g_A 188 NSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASF 266 (354)
T ss_dssp TCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEE
T ss_pred CCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEE
Confidence 11222222 2356899999 566554432221 244332111 0122333112345788888
Q ss_pred c-------CCCCEEEEEECCCcEEEEEcCCCCCCCceE--EEEeCcccccccCeEEEEEcCCCCEEEEec
Q psy4869 540 S-------PDGSYILSNAMDNTVRIWDIRPYVPGERCV--KVMSGHQHNFEKNLLRCAWSVSGLYVTAGS 600 (2435)
Q Consensus 540 s-------pdg~~las~s~Dg~I~lWdl~~~~~~~~~v--~~~~~h~~~~~~~i~~v~~spdg~~Lasgs 600 (2435)
. .+|.++++.-..+.|...++... .+.. ..+... ....+..+++.|||.++++..
T Consensus 267 y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~---g~~~~~~~~~~~---~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 267 VHGDMFPGLRGWLLIACLRGSMLAAVNFGDN---MEVRKISTFFKN---VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCSSSCGGGTTEEEEEETTTTEEEEEEECGG---GCEEEEEEECTT---TSCCEEEEEECTTSCEEEEEC
T ss_pred ECCCCCcccCCcEEEEEcCCCEEEEEEECCC---CcccceeeeccC---CCCCeeEEEECCCCcEEEEEe
Confidence 4 56777776666778888887631 1121 122111 123678899999997666653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.35 Score=60.36 Aligned_cols=235 Identities=16% Similarity=0.131 Sum_probs=120.5
Q ss_pred CceEEEEecCCCcEEEEecCCcEEEEeCCCCce--eEEEe----CCCeEEEEEEecC---CCEEEEEeC-C-----CeEE
Q psy4869 886 SEVRALAFSSDNLALVSACASQVKIWNRPSLSC--LRTID----TGSYALSVCFVPG---DRHVLVGTK-D-----GRLL 950 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~--~~~l~----~~~~v~~vafspd---g~~Lavg~~-d-----g~V~ 950 (2435)
..+..++|.|||+++++-..+.|.+++ .++. +..+. .......|+|+|+ +++|.+... + +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 367899999999987776678999998 3332 22222 2346789999998 666666443 2 6888
Q ss_pred EEEccCCc------eeecccc---cccceeEEEEecCCCCCCCcCCcceEEEEEeCC-------------CeEEEEEccc
Q psy4869 951 IVDIGAGE------ILEDIPA---HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGD-------------KSVKLWQLEL 1008 (2435)
Q Consensus 951 vwd~~sg~------~v~~~~~---h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~D-------------g~V~lW~l~~ 1008 (2435)
.|+...+. ++..++. .......++|.+++ ..+++.+.. |.|..++.+.
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG----------~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG----------MLYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS----------CEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC----------CEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 88887542 2222331 11123567887775 344443221 3333333221
Q ss_pred ccccccccccccccccccceeeeeeccccccCCCEEEEEEcC-CCCEEEEEECCCc--------EEEEEcCC--------
Q psy4869 1009 VSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTT--------VKIFFLDT-------- 1071 (2435)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp-dg~~Lavg~~dg~--------V~i~d~~~-------- 1071 (2435)
.... ............++.. .. -.....++|+| +|.++++-..... |.+.....
T Consensus 179 -~~p~-~npf~~~~~~~~~i~a------~G-~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~ 249 (352)
T 2ism_A 179 -EPAP-GNPFLGRRGARPEVYS------LG-HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVV 249 (352)
T ss_dssp -SBCT-TCTTTTCTTSCTTEEE------EC-CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCC
T ss_pred -CCCC-CCcccCCCCCCccEEE------Ec-CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCccc
Confidence 1000 0000000000001100 00 12366789999 5554444332222 33322111
Q ss_pred --------CeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCce------eEEEeccCCCEEEEEEccCCC
Q psy4869 1072 --------FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC------HKSLLAHEDSVTGVTFVPKTH 1137 (2435)
Q Consensus 1072 --------~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~------~~~l~~h~~~V~~v~fsp~~~ 1137 (2435)
...+..+ .+......++| .+|.++++.-..+.|...+++.... ...+......+..+++.|++.
T Consensus 250 g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 327 (352)
T 2ism_A 250 GRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA 327 (352)
T ss_dssp SCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC
T ss_pred CCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc
Confidence 0112222 22334567777 4676666666667788877764431 122222235688999999987
Q ss_pred EEEEEe
Q psy4869 1138 YFFTTS 1143 (2435)
Q Consensus 1138 ~l~s~s 1143 (2435)
++++..
T Consensus 328 lyv~~~ 333 (352)
T 2ism_A 328 LYVTTS 333 (352)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 666554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.012 Score=80.71 Aligned_cols=231 Identities=9% Similarity=-0.061 Sum_probs=126.1
Q ss_pred EEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEe-CCCeEEEEEccC----CceeecccccccceeEEE
Q psy4869 900 LVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGT-KDGRLLIVDIGA----GEILEDIPAHSQELWSVA 974 (2435)
Q Consensus 900 la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~-~dg~V~vwd~~s----g~~v~~~~~h~~~V~sv~ 974 (2435)
|+......|++.++.+.+....+.....+.+|+|.+.++.|+... ..+.|..+++.. ......+.........|+
T Consensus 380 ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred EEecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 334445677888888776655555445566889999777777654 568999999875 222222221112234455
Q ss_pred EecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCE
Q psy4869 975 MLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1054 (2435)
Q Consensus 975 ~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 1054 (2435)
+...+ +..+++-...+.|.+.+++.... . . +. .........++++|.+.+
T Consensus 460 vD~~~---------g~LY~tD~~~~~I~v~d~dg~~~--------~-------~--l~----~~~~~~P~giavDp~~g~ 509 (699)
T 1n7d_A 460 VDWIH---------SNIYWTDSVLGTVSVADTKGVKR--------K-------T--LF----REQGSKPRAIVVDPVHGF 509 (699)
T ss_dssp CCCSS---------SBCEECCTTTSCEEEEBSSSCCE--------E-------E--EC----CCSSCCCCCEECCSSSSC
T ss_pred EEeeC---------CcEEEEeccCCeEEEEecCCCce--------E-------E--EE----eCCCCCcceEEEccCCCc
Confidence 54322 13444444567787777652110 0 0 00 001123567889998777
Q ss_pred EEEEECC--CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEEccCCceeEEEec--cCCCEEE
Q psy4869 1055 LAVSLLD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG-SGDRTVKVWGLDYGDCHKSLLA--HEDSVTG 1129 (2435)
Q Consensus 1055 Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sg-s~Dg~I~vWd~~t~~~~~~l~~--h~~~V~~ 1129 (2435)
|+++... +.|.+++++.......+...-.....|+|++++..|+.+ ...+.|.++++........+.. .......
T Consensus 510 ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~g 589 (699)
T 1n7d_A 510 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS 589 (699)
T ss_dssp CEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCC
T ss_pred EEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceE
Confidence 7776532 677777765432222222222345688999876555544 4567899999864332222221 1122334
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCcceeEE
Q psy4869 1130 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1161 (2435)
Q Consensus 1130 v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~ 1161 (2435)
|++.. +.++++....+.|..++..+++.+..
T Consensus 590 lavd~-~~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 590 LAVFE-DKVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CEEET-TEEEEECSTTTCEEEEETTTEEEEEC
T ss_pred eEEEC-CEEEEEeCCCCeEEEEEccCCCceEE
Confidence 55543 23344444567888888776654433
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=2.2 Score=53.09 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=62.4
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCC---CCEEEEEeC----C----
Q psy4869 1125 DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD---STLIATGSG----D---- 1193 (2435)
Q Consensus 1125 ~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~d---g~~l~sgs~----D---- 1193 (2435)
.....++|.|+++ |+++..++.|+++|. ++. ..+..+............|+++|+ +..|++... +
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 4568999999987 555667799999973 333 222111111123457899999997 556665543 2
Q ss_pred CcEEEEEccCC--c-----e-eeEeec-cCCCEEEEEEeeCCCEEEEEE
Q psy4869 1194 RTVKVWGLDYG--D-----C-HKSLLA-HEDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1194 g~V~iwd~~t~--~-----~-~~~~~~-h~~~V~~i~~spd~~~lvsgs 1233 (2435)
+.|..|+.... . . +..+.. .......|.|.||+.+.++.+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 56777877644 1 1 111221 112346788888887666544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=4.4 Score=50.07 Aligned_cols=192 Identities=13% Similarity=0.194 Sum_probs=113.0
Q ss_pred EEEEECCCCCEEEEE------------eCCCeEEEEecCCc--eeeEEEeeC-----CCCCeeEEEEcc--CCC-EEEEE
Q psy4869 366 FCSKYHPDGQYIASS------------GYDRQIFIWSVYGE--CENIGVMSG-----HTGAVMDLKFST--DGC-HIFTC 423 (2435)
Q Consensus 366 ~~l~fspdg~~Lasg------------s~Dg~I~iwd~~~~--~~~~~~l~~-----h~~~V~~l~~s~--dg~-~L~s~ 423 (2435)
-.+.+.|+|..++++ ..+|.|.++|.... ......+.+ .......|.+.+ ++. +|+.+
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 345567777555554 27899999998632 111112222 234677888766 454 45555
Q ss_pred eC---CCeEEEEECCCC-c---eEEEEecc-CccccccCcccCCCeEEEEEe-----------------CCCeEEEEeCC
Q psy4869 424 ST---DQTLAVWDLEKG-Q---RIKKMKGH-STFVNSCDPVRRGQLLIASGS-----------------DDCTVKVWDPR 478 (2435)
Q Consensus 424 s~---Dg~I~vwd~~tg-~---~v~~l~~h-~~~v~sv~~~~~~~~llasgs-----------------~Dg~I~vwD~~ 478 (2435)
.. +..|.+|+++.+ . .+..+.+. -...+++.+.+++..+ ++.. ..+.|..+|.
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fy-vt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFY-ATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEE-EEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEE-ecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 32 457888877653 2 22333332 2345677777777433 3322 1245555665
Q ss_pred CCcceEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCC-CcE--EEEEecCCCCEEEEEEcC-CCCEEEEEECC-
Q psy4869 479 KKNQAVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRT-NSV--VQKLRGHSDTVTGLSLSP-DGSYILSNAMD- 552 (2435)
Q Consensus 479 ~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s-~~~--v~~l~~h~~~V~~i~~sp-dg~~las~s~D- 552 (2435)
++.......-...+.++|+||+++|+++. ..+.|+.||+.. ++. .+.+ ...+..-.+++.+ +|++.+++..+
T Consensus 211 -~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g 288 (355)
T 3sre_A 211 -NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNG 288 (355)
T ss_dssp -TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCH
T ss_pred -CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCc
Confidence 33332233445679999999999888876 468999999863 332 2233 2345678899999 59988877654
Q ss_pred CcEEEEEcC
Q psy4869 553 NTVRIWDIR 561 (2435)
Q Consensus 553 g~I~lWdl~ 561 (2435)
+.|..||..
T Consensus 289 ~~v~~~~P~ 297 (355)
T 3sre_A 289 MRIFFYDAE 297 (355)
T ss_dssp HHHHSCCTT
T ss_pred eEEEEECCC
Confidence 355555543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.15 E-value=4.4 Score=49.85 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=67.0
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEE-eecccccCeEEEEEeCC---CCEEEEE---eC
Q psy4869 1120 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFI-SLYGHKLPVLSLDMSYD---STLIATG---SG 1192 (2435)
Q Consensus 1120 l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~-~~~~h~~~V~~l~~s~d---g~~l~sg---s~ 1192 (2435)
+...-...+.++|.|+++++++--..|.|++++...+... .+.... ...........|+++|+ +..|++. ..
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3333456789999999986665544899999986654432 121110 11234677899999995 4555553 23
Q ss_pred CCcEEEEEccCCc----------ee-eEee-ccCCCEEEEEEeeCCCEEEEEECC
Q psy4869 1193 DRTVKVWGLDYGD----------CH-KSLL-AHEDSVTGVTFVPKTHYFFTTSKD 1235 (2435)
Q Consensus 1193 Dg~V~iwd~~t~~----------~~-~~~~-~h~~~V~~i~~spd~~~lvsgs~D 1235 (2435)
++.|.-|.+..+. .+ ..+. ........|.|.||+.+.++.+..
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~ 160 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES 160 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC
Confidence 4566666665421 11 1121 112234678899998877765543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.82 Score=57.00 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=124.9
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe-------ccCccccccCcccC---CCeEEEEEeC-------
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK-------GHSTFVNSCDPVRR---GQLLIASGSD------- 468 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~-------~h~~~v~sv~~~~~---~~~llasgs~------- 468 (2435)
.....|+|.|||++|+.+...|.|++++.. ++....+. ........+++.|+ +..+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 356789999999845566678999999853 33211111 11223466788885 4455555433
Q ss_pred CCeEEEEeCCCCc-------ceE-eec----CcccEEEEEECCCCCEEEEEec-------------CCeEEEEECCCCc-
Q psy4869 469 DCTVKVWDPRKKN-------QAV-SMN----NTYQVTSVAFNDTAECVLTGGI-------------DNDIKMWDLRTNS- 522 (2435)
Q Consensus 469 Dg~I~vwD~~~~~-------~~~-~~~----~~~~v~sv~~sp~g~~l~sgs~-------------dg~V~lwD~~s~~- 522 (2435)
...|..|+..... .+. .+. ..+....++|.|||.+.++-+. .|.|.-+|....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2346556554321 111 111 1223467999999965554433 2567777765320
Q ss_pred -----------EEEEE-ecCCCCEEEEEEcC-CCCEEEEEE-CCCcEEEEEcCCCCC-----------------------
Q psy4869 523 -----------VVQKL-RGHSDTVTGLSLSP-DGSYILSNA-MDNTVRIWDIRPYVP----------------------- 565 (2435)
Q Consensus 523 -----------~v~~l-~~h~~~V~~i~~sp-dg~~las~s-~Dg~I~lWdl~~~~~----------------------- 565 (2435)
....+ .+|. ....++|+| +|+++++-. .++.=.|.-+.....
T Consensus 177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 11111 2343 357899999 555544422 222223322221100
Q ss_pred ----CCceEEEEeCcccccccCeEEEEEcC-------CCCEEEEecCCCeEEEEECCCCcEEEE---ecCCCCCeeEEEE
Q psy4869 566 ----GERCVKVMSGHQHNFEKNLLRCAWSV-------SGLYVTAGSADKCVYIWDTTTRRIAYK---LPGHNGSVNDVQF 631 (2435)
Q Consensus 566 ----~~~~v~~~~~h~~~~~~~i~~v~~sp-------dg~~Lasgs~Dg~V~iwd~~s~~~~~~---l~~h~~~V~~l~f 631 (2435)
...++..+..+ .....+.|-. +|+++++.-..+.|...++..++.+.. +......+..+++
T Consensus 256 ~~~~~~~P~~~~~~~-----~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 330 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDS-----PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT 330 (353)
T ss_dssp SCTTSCCCSEEESSC-----CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred CCCCccCCeEEeCCC-----cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence 00111122111 1345666653 577777777788888888876654432 2223357899999
Q ss_pred cCCCCEEEEEE-CCCcE
Q psy4869 632 HPKEPIIMSAS-SDKTI 647 (2435)
Q Consensus 632 spd~~~Lasgs-~Dg~I 647 (2435)
.|||.+.++.. .+|.|
T Consensus 331 ~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 331 GPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CTTSCEEEEECSTTEEE
T ss_pred CCCCcEEEEEeCCCCEE
Confidence 99998655433 34443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.35 Score=59.42 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=109.5
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEecc-CccccccC--cccCCCeEEEEE-eCCCeEEEEeCCCCcceEeecCcccEE
Q psy4869 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGH-STFVNSCD--PVRRGQLLIASG-SDDCTVKVWDPRKKNQAVSMNNTYQVT 493 (2435)
Q Consensus 418 ~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h-~~~v~sv~--~~~~~~~llasg-s~Dg~I~vwD~~~~~~~~~~~~~~~v~ 493 (2435)
..++.++.||.|.-+|.++|+..-.++.. ...+.... -.+.+...++.. ..||.|..+|..++.....+.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47899999999999999999988888754 11111111 011222444443 689999999998876555443211110
Q ss_pred --EEEEC-----------CCCCEEEEEecCCeEEEEECCCCcEEEEEecCC--CC-----EEEEEEc-----CCCCEEEE
Q psy4869 494 --SVAFN-----------DTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS--DT-----VTGLSLS-----PDGSYILS 548 (2435)
Q Consensus 494 --sv~~s-----------p~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~--~~-----V~~i~~s-----pdg~~las 548 (2435)
-+... ..+..+++|+.+|.++..|+++|+.+..+.... +. ..|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 01111 145688999999999999999999999886321 11 1111111 12456777
Q ss_pred EECCCcEEEEEcCCCCCCCceEEEEeCcccccccCe-EEEEEcCCCCEEEEecCCCeEEEEECCCCcEEE
Q psy4869 549 NAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL-LRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAY 617 (2435)
Q Consensus 549 ~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i-~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~ 617 (2435)
+..+..+.+.+ +....=......+..... ...+ ..-..+.|+++ +.++.||.|.-+|..+|+.+.
T Consensus 171 g~~~y~v~~~~-~sG~~W~~~~s~~~~~~~--~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGASYNVTYSTWQQNVL--DVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSCCCCCEEEEEECCTT--THHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCCeEEEeccccccccc--ccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77776666655 211000000111111100 0000 00001234666 447889999999999888765
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.09 E-value=7.5 Score=47.81 Aligned_cols=232 Identities=11% Similarity=0.117 Sum_probs=123.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEecCCcee-eEEEe----eCCCCCeeEEEEccC---CCEEEEE---eCCCeEE
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE-NIGVM----SGHTGAVMDLKFSTD---GCHIFTC---STDQTLA 430 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~l----~~h~~~V~~l~~s~d---g~~L~s~---s~Dg~I~ 430 (2435)
-..-..++|.|+|.++++--..|+|++++..+... .+..+ ....+....|+++|| +..|+.. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34567899999999777765589999998653322 22222 123567899999995 4455543 2345666
Q ss_pred EEECCCC----------ceE-EEEe-ccCccccccCcccCCCeEEEEEe------------CCCeEEEEeCCCC------
Q psy4869 431 VWDLEKG----------QRI-KKMK-GHSTFVNSCDPVRRGQLLIASGS------------DDCTVKVWDPRKK------ 480 (2435)
Q Consensus 431 vwd~~tg----------~~v-~~l~-~h~~~v~sv~~~~~~~~llasgs------------~Dg~I~vwD~~~~------ 480 (2435)
-|.+..+ +.+ ..+. +..+....+.|.+++..++..|. ..+.|.-++....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6665441 111 1222 12234567888998865555443 1244444454422
Q ss_pred ---cceEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCCC------------------cEEEEEecCCCCEEEEE
Q psy4869 481 ---NQAVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRTN------------------SVVQKLRGHSDTVTGLS 538 (2435)
Q Consensus 481 ---~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s~------------------~~v~~l~~h~~~V~~i~ 538 (2435)
..+....+. ....++|+|+|++.++-. .++.=.|.-+..+ .++..+..+......|.
T Consensus 191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~ 269 (347)
T 3das_A 191 FPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIA 269 (347)
T ss_dssp STTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEE
T ss_pred CCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceE
Confidence 112222332 356889999887665432 2222222222211 12233333333556777
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe
Q psy4869 539 LSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG 599 (2435)
Q Consensus 539 ~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg 599 (2435)
|. +|..++..-..+.|....+.......+....+.+. ...+..+...|||.++++-
T Consensus 270 ~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~----~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 270 YA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE----YGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp EE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT----SSCEEEEEEEETTEEEEEE
T ss_pred EE-cCceeeccccCCEEEEEEecCCceecceEEeecCC----CCCccEEEECCCCcEEEEE
Confidence 76 45556555556666666665321111122222221 2367888899998766554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.97 E-value=1.3 Score=53.63 Aligned_cols=212 Identities=11% Similarity=0.051 Sum_probs=106.8
Q ss_pred CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC-----CeEEEEeCCCCc---ceEee--c-CcccEEEE
Q psy4869 427 QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD-----CTVKVWDPRKKN---QAVSM--N-NTYQVTSV 495 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D-----g~I~vwD~~~~~---~~~~~--~-~~~~v~sv 495 (2435)
..+.+||+.+++....-............. .+..+++.|+.+ ..+.+||+.+.. ..... . .......+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 368889988776443211111111111111 234677777765 458899988766 32221 1 11222233
Q ss_pred EECCCCCEEEEEecC-----CeEEEEECCCCcEEE--EEecCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q psy4869 496 AFNDTAECVLTGGID-----NDIKMWDLRTNSVVQ--KLRGHSDTVTGLSLSPDGSYILSNAMD-----NTVRIWDIRPY 563 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~d-----g~V~lwD~~s~~~v~--~l~~h~~~V~~i~~spdg~~las~s~D-----g~I~lWdl~~~ 563 (2435)
.+ ++++++.|+.+ ..+.+||..+.+-.. .+......-..+.+ +++.++.|+.+ ..+.+||+...
T Consensus 110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 33 56777777654 468999988765432 22211111222222 67777777765 45788887642
Q ss_pred CCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----CeEEEEECCCCcEEEE--ecCCCCCeeEEEEcCCCC
Q psy4869 564 VPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----KCVYIWDTTTRRIAYK--LPGHNGSVNDVQFHPKEP 636 (2435)
Q Consensus 564 ~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----g~V~iwd~~s~~~~~~--l~~h~~~V~~l~fspd~~ 636 (2435)
.-......... ......+. .++++++.|+.+ ..+.+||..+.+-... +......-.++.+ +++
T Consensus 186 -----~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 255 (301)
T 2vpj_A 186 -----HWTNVTPMATK-RSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGR 255 (301)
T ss_dssp -----EEEEECCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred -----cEEeCCCCCcc-cccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCE
Confidence 11111111100 01112222 267777888764 4689999987754332 2111111122222 566
Q ss_pred EEEEEECCC-----cEEEecCC
Q psy4869 637 IIMSASSDK-----TIYLGESP 653 (2435)
Q Consensus 637 ~Lasgs~Dg-----~I~vWd~~ 653 (2435)
+++.|+.++ .+.+||+.
T Consensus 256 i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 256 LYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp EEEECCBCSSSBEEEEEEEETT
T ss_pred EEEEcCcCCCcccccEEEEcCC
Confidence 777777653 35555554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=1.1 Score=55.41 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=97.0
Q ss_pred cEEEEEECCCCCEEEEE------------ecCCeEEEEECCC--CcEE-EEEec-----CCCCEEEEEEcC--CCC-EEE
Q psy4869 491 QVTSVAFNDTAECVLTG------------GIDNDIKMWDLRT--NSVV-QKLRG-----HSDTVTGLSLSP--DGS-YIL 547 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sg------------s~dg~V~lwD~~s--~~~v-~~l~~-----h~~~V~~i~~sp--dg~-~la 547 (2435)
....+.+.|+|..+++. ..+|.|.++|..+ .+.. -.+.+ ..-....|.+.+ +|. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566677776544443 2689999999874 3321 12222 224678888866 454 344
Q ss_pred EEE-C--CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC-----------------CCeEEE
Q psy4869 548 SNA-M--DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA-----------------DKCVYI 607 (2435)
Q Consensus 548 s~s-~--Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~-----------------Dg~V~i 607 (2435)
.+. . +.+|.+|++.........+..+.+.. -.....+.+.++|++.++... .|.|..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~---~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL---LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTT---CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCC---CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 443 3 67889998875322223344444432 246788999999998887651 255666
Q ss_pred EECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEecCC
Q psy4869 608 WDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS-SDKTIYLGESP 653 (2435)
Q Consensus 608 wd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs-~Dg~I~vWd~~ 653 (2435)
+|.. +. ..+...-...+.++|+||++.|+.+. ..+.|+.|+++
T Consensus 208 ~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 208 YSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp ECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 6653 32 22223345679999999999777665 56889999886
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.89 E-value=3.8 Score=50.83 Aligned_cols=233 Identities=11% Similarity=0.142 Sum_probs=122.6
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCcee-eEEEe----eCCCCCeeEEEEccC---CCEEEEEeC--------CC
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE-NIGVM----SGHTGAVMDLKFSTD---GCHIFTCST--------DQ 427 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~l----~~h~~~V~~l~~s~d---g~~L~s~s~--------Dg 427 (2435)
.-..|+|.|+|++|+.+...|+|++++..+... .+..+ ....+....|+|+|+ +..|+.+.. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 346899999999344556789999998543221 11111 112346789999996 555555432 23
Q ss_pred eEEEEECCCC--c--eEEE-Eec------cCccccccCcccCCCeEEEEEeC------------CCeEEEEeCCCC----
Q psy4869 428 TLAVWDLEKG--Q--RIKK-MKG------HSTFVNSCDPVRRGQLLIASGSD------------DCTVKVWDPRKK---- 480 (2435)
Q Consensus 428 ~I~vwd~~tg--~--~v~~-l~~------h~~~v~sv~~~~~~~~llasgs~------------Dg~I~vwD~~~~---- 480 (2435)
.|..|++..+ + .... +.. .......+.|.|++..++..|.. .+.|.-+|....
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~ 178 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD 178 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence 5666666432 1 1111 111 11234678899988444444332 246666666532
Q ss_pred ----------cceEeecCcccEEEEEECCCCCEEEEEecCC----eEEEEECCCC-------------------------
Q psy4869 481 ----------NQAVSMNNTYQVTSVAFNDTAECVLTGGIDN----DIKMWDLRTN------------------------- 521 (2435)
Q Consensus 481 ----------~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg----~V~lwD~~s~------------------------- 521 (2435)
..+.... ......++|+|....|.++.... .|.+ +..+
T Consensus 179 npf~~~~~~~~~i~a~G-~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~--i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 179 NPFIKESGVRAEIWSYG-IRNPQGMAMNPWSNALWLNEHGPRGGDEINI--PQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTTTSTTSCTTEEEEC-CSEEEEEEEETTTTEEEEEEECSBSCEEEEC--CCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCcCCCCCCccEEEEc-CcCccceEEECCCCCEEEEecCCCCCcEEeE--eccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 1122222 23467899999433444443321 2222 1111
Q ss_pred ------cEEEEEecCCCCEEEEEEcC-------CCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEE
Q psy4869 522 ------SVVQKLRGHSDTVTGLSLSP-------DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588 (2435)
Q Consensus 522 ------~~v~~l~~h~~~V~~i~~sp-------dg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~ 588 (2435)
.++..+. |......+.|.. +|.++++.-..+.|...++.. .+.+....-. ......+..++
T Consensus 256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~----~~~~~~~~~~-~~~~~rp~~v~ 329 (353)
T 2g8s_A 256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG----DKVTEDGRIL-TDRGQRIRDVR 329 (353)
T ss_dssp SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET----TEEEEEEEES-GGGCCCEEEEE
T ss_pred CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC----CeEeeeEEcc-cCCCCceeEEE
Confidence 1122233 234567788864 466666666677787777762 2222211100 01123678899
Q ss_pred EcCCCCEEEEec-CCCeE
Q psy4869 589 WSVSGLYVTAGS-ADKCV 605 (2435)
Q Consensus 589 ~spdg~~Lasgs-~Dg~V 605 (2435)
+.|||.++++.. .+|.|
T Consensus 330 ~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 330 TGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp ECTTSCEEEEECSTTEEE
T ss_pred ECCCCcEEEEEeCCCCEE
Confidence 999998666432 34443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.47 E-value=2.5 Score=50.90 Aligned_cols=213 Identities=12% Similarity=0.081 Sum_probs=106.2
Q ss_pred CcEEEEeCCCCceeEE--EeCCCeEEEEEEecCCCEEEEEeCC-----CeEEEEEccCCc---e--eecccccccceeEE
Q psy4869 906 SQVKIWNRPSLSCLRT--IDTGSYALSVCFVPGDRHVLVGTKD-----GRLLIVDIGAGE---I--LEDIPAHSQELWSV 973 (2435)
Q Consensus 906 ~~V~Iwd~~~~~~~~~--l~~~~~v~~vafspdg~~Lavg~~d-----g~V~vwd~~sg~---~--v~~~~~h~~~V~sv 973 (2435)
+.+.+||..+.+.... ++.+..-.+++ ..+++.++.|+.+ ..+.+||+.+++ - +..++..... .++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-eeE
Confidence 5788999887654322 22221111222 2466666776643 468999988766 2 2222211111 122
Q ss_pred EEecCCCCCCCcCCcceEEEEEeCCC-----eEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEE
Q psy4869 974 AMLPDQFNPNVYLPLQIQVVTGGGDK-----SVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV 1048 (2435)
Q Consensus 974 ~~s~d~~~~~~~~p~~~~l~sgs~Dg-----~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 1048 (2435)
+.. ++ ..++.|+.++ .+.++|.....+... .... .......++.+
T Consensus 109 ~~~-~~----------~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~------------------~~~p-~~r~~~~~~~~ 158 (301)
T 2vpj_A 109 TTL-GD----------MIYVSGGFDGSRRHTSMERYDPNIDQWSML------------------GDMQ-TAREGAGLVVA 158 (301)
T ss_dssp EEE-TT----------EEEEECCBCSSCBCCEEEEEETTTTEEEEE------------------EECS-SCCBSCEEEEE
T ss_pred EEE-CC----------EEEEEcccCCCcccceEEEEcCCCCeEEEC------------------CCCC-CCcccceEEEE
Confidence 222 22 3566666543 455666543322110 0000 01111122222
Q ss_pred cCCCCEEEEEECC-----CcEEEEEcCCCeEEEE--EecCCcCEEEEEEcCCCCEEEEEECC-----CcEEEEEccCCce
Q psy4869 1049 SPDSKLLAVSLLD-----TTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDSTLIATGSGD-----RTVKVWGLDYGDC 1116 (2435)
Q Consensus 1049 spdg~~Lavg~~d-----g~V~i~d~~~~~~~~~--l~~h~~~V~sl~~spdg~~L~Sgs~D-----g~I~vWd~~t~~~ 1116 (2435)
++++++.|+.+ ..+.+||..+.+-... +.........+.+ ++++++.|+.+ ..+.+||+++.+-
T Consensus 159 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 159 --SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred --CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 67777777654 4688899876544332 2111111222222 56777777764 4689999987754
Q ss_pred eEEE--eccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCc
Q psy4869 1117 HKSL--LAHEDSVTGVTFVPKTHYFFTTSKD-----GRVKQWDADNF 1156 (2435)
Q Consensus 1117 ~~~l--~~h~~~V~~v~fsp~~~~l~s~s~D-----g~V~iwD~~~~ 1156 (2435)
...- .........+.+ +++.++.|+.+ ..+.+||..+.
T Consensus 235 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 235 TTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 3321 111222223333 56777777765 35778888764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.39 E-value=1.6 Score=52.66 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=58.0
Q ss_pred CcceeEEeecC-------CeEEEEEcccceEEEE--ecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCce
Q psy4869 1325 DSKLLAVSLLD-------TTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDSTLIATGSGD-----RTVKVWGLDYGDC 1390 (2435)
Q Consensus 1325 dg~~lavgs~d-------G~V~v~d~~~~k~i~~--~~~h~~~V~~la~spdg~~L~sGg~D-----g~V~iwdl~~gk~ 1390 (2435)
+++.++.|+.+ ..+.+||+.+.+.... +.........+ .-++++++.||.+ ..+.+||..+.+-
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 56677776542 3578888877553322 22211111222 2378888888875 4689999987653
Q ss_pred EEE--ecccccceEEEEEeeCCCEEEEEeCCC-----cEEEEECCCc
Q psy4869 1391 HKS--LLAHEDSVTGVTFVPKTHYFFTTSKDG-----RVKQWDADNF 1430 (2435)
Q Consensus 1391 ~~~--~~~h~~~V~~laf~P~~~~laSgg~Dg-----~V~lWd~~~~ 1430 (2435)
... +......-..+.+ ++.+++.||.++ .|.+||+.+.
T Consensus 233 ~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 233 RQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 322 1111111222222 677888888664 4788888764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.29 E-value=2.5 Score=51.06 Aligned_cols=212 Identities=15% Similarity=0.177 Sum_probs=104.8
Q ss_pred CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC-----eEEEEeCCCCcceEeec---CcccEEEEEEC
Q psy4869 427 QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC-----TVKVWDPRKKNQAVSMN---NTYQVTSVAFN 498 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg-----~I~vwD~~~~~~~~~~~---~~~~v~sv~~s 498 (2435)
..+.+||+.+++....-........... ...+..+++.|+.++ .+.+||+.+.+...... .......+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGM-VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceE-EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence 3578888887764332111111111111 112446777777553 58889987765333221 1112222333
Q ss_pred CCCCEEEEEecCC-----eEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEECC-------CcEEEEEcCCCC
Q psy4869 499 DTAECVLTGGIDN-----DIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAMD-------NTVRIWDIRPYV 564 (2435)
Q Consensus 499 p~g~~l~sgs~dg-----~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~D-------g~I~lWdl~~~~ 564 (2435)
++++++.|+.++ .+.+||..+.+-... +.........+.+ +++.++.|+.+ ..+.+||+...
T Consensus 108 -~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~- 183 (302)
T 2xn4_A 108 -NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN- 183 (302)
T ss_dssp -TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT-
T ss_pred -CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC-
Confidence 567777787653 588999887754332 2111111122222 56666666643 34788888632
Q ss_pred CCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----CeEEEEECCCCcEEEE--ecCCCCCeeEEEEcCCCCE
Q psy4869 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----KCVYIWDTTTRRIAYK--LPGHNGSVNDVQFHPKEPI 637 (2435)
Q Consensus 565 ~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----g~V~iwd~~s~~~~~~--l~~h~~~V~~l~fspd~~~ 637 (2435)
+ -......... ......+. .++++++.|+.+ ..+.+||..+.+-... +......- +++. -++.+
T Consensus 184 ---~-W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~-~~~~i 254 (302)
T 2xn4_A 184 ---E-WTYIAEMSTR-RSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVCA-VNGLL 254 (302)
T ss_dssp ---E-EEEECCCSSC-CBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEE
T ss_pred ---c-EEECCCCccc-cccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEEE-ECCEE
Confidence 1 1111111100 01112222 267888888764 3689999987754322 21111111 1222 25667
Q ss_pred EEEEECCC-----cEEEecCC
Q psy4869 638 IMSASSDK-----TIYLGESP 653 (2435)
Q Consensus 638 Lasgs~Dg-----~I~vWd~~ 653 (2435)
++.|+.++ .+.+||+.
T Consensus 255 ~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 255 YVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp EEECCBCSSSBCCCEEEEETT
T ss_pred EEECCcCCCcccccEEEEcCC
Confidence 77777654 35666654
|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... | Back alignment and structure |
|---|
Probab=94.12 E-value=0.0088 Score=86.80 Aligned_cols=47 Identities=15% Similarity=0.312 Sum_probs=31.0
Q ss_pred eecccchhhhheeeeeechhhh-HHHHHhHhhhhcCC------CceEEEeeeeee
Q psy4869 1625 KKFLFSSELEEVLLVLSLSQVT-DLLTHLSSLLDSSH------HRCELVIRVAVF 1672 (2435)
Q Consensus 1625 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~ 1672 (2435)
..++.++++.|.+-+|=.+++- -|++-+..++...+ | ++|++++..+
T Consensus 1324 ~~rt~SNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vd~RH-l~LlaD~MT~ 1377 (1733)
T 1twf_A 1324 PTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRH-MALLVDVMTT 1377 (1733)
T ss_dssp TTTCBCSCHHHHHHHHCHHHHHHHHHHHHHHHHHTTTCCCCHHH-HHHHHHHTTT
T ss_pred cccceeccHHHHHHHhhHHHHHHHHHHHHHHHHhhcCccccchh-hhhhhhhhcc
Confidence 4567788898988888888554 45555665555332 3 6777776654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.64 E-value=3.5 Score=49.77 Aligned_cols=220 Identities=11% Similarity=0.048 Sum_probs=111.3
Q ss_pred EEEEEeC--CCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC----CeEEEEeCCCCcceEee--c-Cc
Q psy4869 419 HIFTCST--DQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD----CTVKVWDPRKKNQAVSM--N-NT 489 (2435)
Q Consensus 419 ~L~s~s~--Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D----g~I~vwD~~~~~~~~~~--~-~~ 489 (2435)
.++.|+. ...+.+||..+++....-............. .+..+++.|+.+ ..+.+||+.+......- . ..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 92 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR 92 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence 4445554 3578999998876543211111111111111 244677777765 56888998876543322 1 11
Q ss_pred ccEEEEEECCCCCEEEEEecC------CeEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEEC---------C
Q psy4869 490 YQVTSVAFNDTAECVLTGGID------NDIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAM---------D 552 (2435)
Q Consensus 490 ~~v~sv~~sp~g~~l~sgs~d------g~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~---------D 552 (2435)
.....+.+ ++++++.|+.+ ..+.+||..+.+-... +......-..+.+ +++.++.|+. -
T Consensus 93 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 93 DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEEC
T ss_pred cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccccc
Confidence 12222333 56777777765 4689999988754332 2111111122222 5666666654 3
Q ss_pred CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----CeEEEEECCCCcEEE--EecCCCCC
Q psy4869 553 NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----KCVYIWDTTTRRIAY--KLPGHNGS 625 (2435)
Q Consensus 553 g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----g~V~iwd~~s~~~~~--~l~~h~~~ 625 (2435)
..+.+||+... .-......... ......+.+ ++++++.|+.+ ..+.+||..+.+-.. .+......
T Consensus 169 ~~~~~yd~~~~-----~W~~~~~~p~~-r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 169 NSCEVYDPATE-----TWTELCPMIEA-RKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp CCEEEEETTTT-----EEEEECCCSSC-CBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred ceEEEeCCCCC-----eEEECCCccch-hhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 44788888642 11122111100 011122222 67777887754 468899998765322 22222222
Q ss_pred eeEEEEcCCCCEEEEEECCC-----cEEEecCC
Q psy4869 626 VNDVQFHPKEPIIMSASSDK-----TIYLGESP 653 (2435)
Q Consensus 626 V~~l~fspd~~~Lasgs~Dg-----~I~vWd~~ 653 (2435)
..++.+ ++.+++.|+.++ .+.+||+.
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 223333 566788887553 45566654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.43 E-value=4 Score=49.27 Aligned_cols=212 Identities=7% Similarity=0.051 Sum_probs=106.7
Q ss_pred CcEEEEeCCCCceeEE--EeCCCeEEEEEEecCCCEEEEEeCC----CeEEEEEccCCcee--ecccccccceeEEEEec
Q psy4869 906 SQVKIWNRPSLSCLRT--IDTGSYALSVCFVPGDRHVLVGTKD----GRLLIVDIGAGEIL--EDIPAHSQELWSVAMLP 977 (2435)
Q Consensus 906 ~~V~Iwd~~~~~~~~~--l~~~~~v~~vafspdg~~Lavg~~d----g~V~vwd~~sg~~v--~~~~~h~~~V~sv~~s~ 977 (2435)
+.+.+||..+.+.... ++.+..-.+++ .-+++.++.|+.+ ..+.+||+.+++-. ..++..... .+++..
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~- 100 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACV-FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS-LAACAA- 100 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEE-EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS-CEEEEE-
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEE-EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc-eeEEEE-
Confidence 6899999887654422 22222111222 2366777777644 67889999887632 222211111 122222
Q ss_pred CCCCCCCcCCcceEEEEEeCC------CeEEEEEcccccccccccccccccccccceeeeeeccccccC-CCEEEEEEcC
Q psy4869 978 DQFNPNVYLPLQIQVVTGGGD------KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE-EQVLCARVSP 1050 (2435)
Q Consensus 978 d~~~~~~~~p~~~~l~sgs~D------g~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~v~~l~~sp 1050 (2435)
++ ..++.|+.+ ..+.+||.....+... .. .... ....++. -
T Consensus 101 ~~----------~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~------------------~~--~p~~r~~~~~~~--~ 148 (306)
T 3ii7_A 101 EG----------KIYTSGGSEVGNSALYLFECYDTRTESWHTK------------------PS--MLTQRCSHGMVE--A 148 (306)
T ss_dssp TT----------EEEEECCBBTTBSCCCCEEEEETTTTEEEEE------------------CC--CSSCCBSCEEEE--E
T ss_pred CC----------EEEEECCCCCCCcEeeeEEEEeCCCCceEeC------------------CC--CcCCcceeEEEE--E
Confidence 22 366666654 3466666543332110 00 0011 1111222 2
Q ss_pred CCCEEEEEEC---------CCcEEEEEcCCCeEEEE--EecCCcCEEEEEEcCCCCEEEEEECC-----CcEEEEEccCC
Q psy4869 1051 DSKLLAVSLL---------DTTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDSTLIATGSGD-----RTVKVWGLDYG 1114 (2435)
Q Consensus 1051 dg~~Lavg~~---------dg~V~i~d~~~~~~~~~--l~~h~~~V~sl~~spdg~~L~Sgs~D-----g~I~vWd~~t~ 1114 (2435)
++++++.|+. -..+.+||..+.+-... +......-..+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 6677777753 34588899876543322 2111111122222 56677776653 35888998776
Q ss_pred ceeEE--EeccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCc
Q psy4869 1115 DCHKS--LLAHEDSVTGVTFVPKTHYFFTTSKD-----GRVKQWDADNF 1156 (2435)
Q Consensus 1115 ~~~~~--l~~h~~~V~~v~fsp~~~~l~s~s~D-----g~V~iwD~~~~ 1156 (2435)
+-... +.........+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 227 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 227 EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 43221 1111222233333 67778888754 56888998764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.39 E-value=15 Score=47.26 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=86.6
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEE--EEec------cCccccccCcccC---CCeEEEEEeC------
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIK--KMKG------HSTFVNSCDPVRR---GQLLIASGSD------ 468 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~--~l~~------h~~~v~sv~~~~~---~~~llasgs~------ 468 (2435)
...+.|+|.|||+++++-...+.|++++..+++... .+.. ....+..+++.|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456799999999866655444578888866565322 2221 1233457888885 5555555442
Q ss_pred ------CCeEEEEeCCCC-------cceEe-ec--CcccEEEEEECCCCCEEEEEecC----------------------
Q psy4869 469 ------DCTVKVWDPRKK-------NQAVS-MN--NTYQVTSVAFNDTAECVLTGGID---------------------- 510 (2435)
Q Consensus 469 ------Dg~I~vwD~~~~-------~~~~~-~~--~~~~v~sv~~sp~g~~l~sgs~d---------------------- 510 (2435)
...|.-|+.... +.+.. +. ..+....|+|.|||.+.++.+..
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~ 186 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQE 186 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHH
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccccccccc
Confidence 234555554321 11111 21 23457899999999877764431
Q ss_pred ----------CeEEEEECCCCc----------EEEEE-ecCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcC
Q psy4869 511 ----------NDIKMWDLRTNS----------VVQKL-RGHSDTVTGLSLSPDGSYILS-NAMDNTVRIWDIR 561 (2435)
Q Consensus 511 ----------g~V~lwD~~s~~----------~v~~l-~~h~~~V~~i~~spdg~~las-~s~Dg~I~lWdl~ 561 (2435)
|.|.-++....- ....+ .+|. ....++|+|+|.+.++ .+.|+--.|.-+.
T Consensus 187 ~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 187 LNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp HHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCS-EEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred ccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCC-CcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 445555543220 11112 2443 4678999998876665 3345555555444
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=93.27 E-value=2.2 Score=53.14 Aligned_cols=158 Identities=9% Similarity=0.073 Sum_probs=100.6
Q ss_pred EEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCC----C-eEEEEEEecCCCEEEEEeCCCeEEEEEccCCce------
Q psy4869 891 LAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTG----S-YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEI------ 959 (2435)
Q Consensus 891 la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~----~-~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~------ 959 (2435)
...+.+|..|+.+.++.|+.-++.....-..+..+ . .+..+..+|+|++||+-+ +..|.|-.+..+..
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence 34556888888999999998887754444444443 2 466799999999999874 45788877764321
Q ss_pred ------eecccc------cccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccc
Q psy4869 960 ------LEDIPA------HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHK 1027 (2435)
Q Consensus 960 ------v~~~~~------h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~ 1027 (2435)
.+.+.. ...+|..+.|+|-+ ..+..|++-..|+.||+|++.... +... .+.....
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~-------~~ds~LVVLtsD~~Ir~yDl~~s~-----~~P~-~L~k~~~ 171 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKS-------YRDSCIVVLKEDDTITMFDILNSQ-----EKPI-VLNKPNN 171 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTB-------GGGCEEEEEETTSCEEEEETTCTT-----SCCE-EESCCCS
T ss_pred cccccceeEEEcCCcccCCCCceeEEEecccc-------CCCCeEEEEecCCEEEEEEcccCC-----CCCc-chhcccc
Confidence 111211 24579999999987 345689999999999999986411 0001 1110000
Q ss_pred eeeeeeccccccCCCEEEEEEcCCCCEEEEEE--CCCcEEEE
Q psy4869 1028 VLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL--LDTTVKIF 1067 (2435)
Q Consensus 1028 ~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~--~dg~V~i~ 1067 (2435)
... .-.....|.+++|..+|=.|.+.+ .+|.|+-.
T Consensus 172 ~fg-----~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 172 SFG-----LDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEE-----SCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ccC-----CCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 000 011226788999999877677655 55655433
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.15 E-value=4.1 Score=49.45 Aligned_cols=179 Identities=10% Similarity=0.039 Sum_probs=90.7
Q ss_pred EEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC-----C------CeEEEEECCCCceEEEEec
Q psy4869 377 IASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST-----D------QTLAVWDLEKGQRIKKMKG 445 (2435)
Q Consensus 377 Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-----D------g~I~vwd~~tg~~v~~l~~ 445 (2435)
++.|+ ..+.+||.....=....+..............++..++.|+. . ..+.+||..+++....-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 34444 568888876543222222222223333333457777788773 1 1378899888765332111
Q ss_pred cCccccccCcccCCCeEEEEEeCC--------CeEEEEeCCCCcceEee--cC-cccEEEEEECCCCCEEEEEec-----
Q psy4869 446 HSTFVNSCDPVRRGQLLIASGSDD--------CTVKVWDPRKKNQAVSM--NN-TYQVTSVAFNDTAECVLTGGI----- 509 (2435)
Q Consensus 446 h~~~v~sv~~~~~~~~llasgs~D--------g~I~vwD~~~~~~~~~~--~~-~~~v~sv~~sp~g~~l~sgs~----- 509 (2435)
....... .....+..+++.|+.+ ..+.+||+.+.+-.... .. ......+. -++++++.|+.
T Consensus 86 p~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 86 PSPRCLF-GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRK 162 (315)
T ss_dssp SSCEESC-EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSC
T ss_pred Ccchhce-eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCc
Confidence 1111110 0111244666777742 45888998876432221 11 11122222 35667777776
Q ss_pred -CCeEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEEcCC
Q psy4869 510 -DNDIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAMDN-----TVRIWDIRP 562 (2435)
Q Consensus 510 -dg~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~Dg-----~I~lWdl~~ 562 (2435)
-..+.+||..+.+-... +......-.++.+ +++.++.|+.++ .+.+||+..
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence 24689999987654321 1111111122222 677777887654 477888763
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=93.06 E-value=2 Score=53.44 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=69.1
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEECCCCc------------EEEEEec------CCCCEEEEEEcCC---CCEEEEE
Q psy4869 491 QVTSVAFNDTAECVLTGGIDNDIKMWDLRTNS------------VVQKLRG------HSDTVTGLSLSPD---GSYILSN 549 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~------------~v~~l~~------h~~~V~~i~~spd---g~~las~ 549 (2435)
.+..+..+|+|++||..+ +..|.|..+..+. ..+.+.- ...+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577799999999999886 5588888887321 1223321 3578999999994 6789999
Q ss_pred ECCCcEEEEEcCCCCCCCceEEEEeCccc-----ccccCeEEEEEcCCCCEEEE
Q psy4869 550 AMDNTVRIWDIRPYVPGERCVKVMSGHQH-----NFEKNLLRCAWSVSGLYVTA 598 (2435)
Q Consensus 550 s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~-----~~~~~i~~v~~spdg~~Las 598 (2435)
..|++||+||+.... .++. .+..... .....+.+++|..+|-.|..
T Consensus 146 tsD~~Ir~yDl~~s~--~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 146 KEDDTITMFDILNSQ--EKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp ETTSCEEEEETTCTT--SCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred ecCCEEEEEEcccCC--CCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 999999999998522 2222 3321111 11146778888875543333
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.02 E-value=1.1 Score=54.93 Aligned_cols=189 Identities=10% Similarity=-0.013 Sum_probs=105.8
Q ss_pred CEEEEEECCCcEEEEEccCCceeEEEecc-CCCEEEEEEc--cCCCEEEEE--eCCCcEEEEeCCCcceeEEEEEEEeec
Q psy4869 1095 TLIATGSGDRTVKVWGLDYGDCHKSLLAH-EDSVTGVTFV--PKTHYFFTT--SKDGRVKQWDADNFERIVTLHFFISLY 1169 (2435)
Q Consensus 1095 ~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h-~~~V~~v~fs--p~~~~l~s~--s~Dg~V~iwD~~~~~~~~~~~~~~~~~ 1169 (2435)
.+++.++.||.|.-+|.++|+.+..+... ..++....-. +.+..++.. ..||.|..++..++.....+... ..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~--~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR--QL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH--HH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc--cc
Confidence 46888999999999999999999988754 1222221100 112234443 58999999999887554433210 00
Q ss_pred ccccCeEE---EEE-----eCCCCEEEEEeCCCcEEEEEccCCceeeEeeccC--CC-----EEEEEEe-----eCCCEE
Q psy4869 1170 GHKLPVLS---LDM-----SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE--DS-----VTGVTFV-----PKTHYF 1229 (2435)
Q Consensus 1170 ~h~~~V~~---l~~-----s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~--~~-----V~~i~~s-----pd~~~l 1229 (2435)
....++.. ..+ ...+..+++|+.+|.+...|+++|+.+..+.... .. ..|.... ..+..|
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 11222221 000 0145688999999999999999999988875321 10 1111111 123567
Q ss_pred EEEECCCcEEEEECCCCceEEEEee---CCcccc---------cCceEEEEEECCCeEEEEEcccccccc
Q psy4869 1230 FTTSKDGRVKQWDADNFERIVTLHF---NPNVYL---------PLQIQVVTGGGDKSVKLWQLELVSVNR 1287 (2435)
Q Consensus 1230 vsgs~Dg~I~vwD~~~~~~v~~~~~---~~~~~~---------~~~~~lv~g~~d~~v~iwdl~~~~~~~ 1287 (2435)
+.+..+..+.+.+ ++++ +..... ...... .....++.+..|+.|..+|........
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence 7777777766665 3332 211110 000000 011234668889999999887655544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.21 E-value=3 Score=50.77 Aligned_cols=202 Identities=10% Similarity=0.027 Sum_probs=98.5
Q ss_pred CeEEEEECCCCceEEEEec--cCccccccCcccCCCeEEEEEeC-----C------CeEEEEeCCCCcceEee--cC-cc
Q psy4869 427 QTLAVWDLEKGQRIKKMKG--HSTFVNSCDPVRRGQLLIASGSD-----D------CTVKVWDPRKKNQAVSM--NN-TY 490 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~--h~~~v~sv~~~~~~~~llasgs~-----D------g~I~vwD~~~~~~~~~~--~~-~~ 490 (2435)
..+.+||..+++... ... ............ +..+++.|+. . ..+..||+.+.+....- .. ..
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 578999998887643 221 111111111122 3456666663 1 12778888776532221 11 11
Q ss_pred cEEEEEECCCCCEEEEEecC--------CeEEEEECCCCcEEE--EEecCCCCEEEEEEcCCCCEEEEEEC-C-----Cc
Q psy4869 491 QVTSVAFNDTAECVLTGGID--------NDIKMWDLRTNSVVQ--KLRGHSDTVTGLSLSPDGSYILSNAM-D-----NT 554 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs~d--------g~V~lwD~~s~~~v~--~l~~h~~~V~~i~~spdg~~las~s~-D-----g~ 554 (2435)
....+.+ +++.++.|+.+ ..+.+||..+.+-.. .+......-..+. -+++.++.|+. + ..
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 166 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNK 166 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCC
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccce
Confidence 1222222 56667777642 458999998875322 1111111112222 35667777776 2 46
Q ss_pred EEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC-----eEEEEECCCCcEEEE--ecCCCCCee
Q psy4869 555 VRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK-----CVYIWDTTTRRIAYK--LPGHNGSVN 627 (2435)
Q Consensus 555 I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg-----~V~iwd~~s~~~~~~--l~~h~~~V~ 627 (2435)
+.+||+... .-......... ......+. -++++++.|+.++ .+.+||..+.+-... +......-.
T Consensus 167 ~~~yd~~~~-----~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 167 MCVYDPKKF-----EWKELAPMQTA-RSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp EEEEETTTT-----EEEECCCCSSC-CBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred EEEEeCCCC-----eEEECCCCCCc-hhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 888887642 11111111000 01112222 2677888887654 588999987754332 111111112
Q ss_pred EEEEcCCCCEEEEEECC
Q psy4869 628 DVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 628 ~l~fspd~~~Lasgs~D 644 (2435)
.+.+ ++++++.|+.+
T Consensus 239 ~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 239 LVSL--VGTLYAIGGFA 253 (315)
T ss_dssp EEEE--TTEEEEEEEEE
T ss_pred EEEE--CCEEEEECCcc
Confidence 2222 55677777764
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=92.21 E-value=24 Score=45.43 Aligned_cols=90 Identities=16% Similarity=0.292 Sum_probs=62.6
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEEecCC-------------------------cCE--EEEEEc---CCCCEEEEEEC-C
Q psy4869 1055 LAVSLLDTTVKIFFLDTFKFFISLYGHK-------------------------LPV--LSLDMS---YDSTLIATGSG-D 1103 (2435)
Q Consensus 1055 Lavg~~dg~V~i~d~~~~~~~~~l~~h~-------------------------~~V--~sl~~s---pdg~~L~Sgs~-D 1103 (2435)
+.+|+..|.|+||-+.+++.+..+.... +.. -.+++. .||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5567778999999999998888763110 001 122332 26788887764 6
Q ss_pred CcEEEEEccCCceeEEEec-cCCCEEEEEEc--cCCCEEEEEeC
Q psy4869 1104 RTVKVWGLDYGDCHKSLLA-HEDSVTGVTFV--PKTHYFFTTSK 1144 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l~~-h~~~V~~v~fs--p~~~~l~s~s~ 1144 (2435)
.+|-..+++..++-+.+.. ....+..++|. |+..++++++.
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEEC
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecce
Confidence 7788888888888777754 55678888887 67888888765
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=92.02 E-value=4.6 Score=48.83 Aligned_cols=203 Identities=12% Similarity=0.162 Sum_probs=99.4
Q ss_pred eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeC----C-----CeEEEEeCCCCcceEee--c-CcccEEEE
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSD----D-----CTVKVWDPRKKNQAVSM--N-NTYQVTSV 495 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~----D-----g~I~vwD~~~~~~~~~~--~-~~~~v~sv 495 (2435)
.+.+||..+++....-........... ...+..+++.|+. + ..+.+||+.+.+..... . .......+
T Consensus 40 ~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 118 (308)
T 1zgk_A 40 YLEAYNPSNGTWLRLADLQVPRSGLAG-CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG 118 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEE-EEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred eEEEEcCCCCeEeECCCCCcccccceE-EEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE
Confidence 578888877765432111111111111 1123466677765 2 35788888766533221 1 11222233
Q ss_pred EECCCCCEEEEEecC-----CeEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q psy4869 496 AFNDTAECVLTGGID-----NDIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAMD-----NTVRIWDIRPY 563 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~d-----g~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~D-----g~I~lWdl~~~ 563 (2435)
.+ ++++++.|+.+ ..+.+||..+.+-... +......-..+.+ +++.++.|+.+ ..+.+||+...
T Consensus 119 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 194 (308)
T 1zgk_A 119 VI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN 194 (308)
T ss_dssp EE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence 33 56777777643 4688999987654322 1111111222333 56777777754 45788887632
Q ss_pred CCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----CeEEEEECCCCcEEEE--ecCCCCCeeEEEEcCCCC
Q psy4869 564 VPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----KCVYIWDTTTRRIAYK--LPGHNGSVNDVQFHPKEP 636 (2435)
Q Consensus 564 ~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----g~V~iwd~~s~~~~~~--l~~h~~~V~~l~fspd~~ 636 (2435)
.-........ .......+.+ ++++++.|+.+ ..+.+||+.+.+-... +......- +++. -+++
T Consensus 195 -----~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~ 264 (308)
T 1zgk_A 195 -----EWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITV-HQGR 264 (308)
T ss_dssp -----EEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTE
T ss_pred -----eEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEEE-ECCE
Confidence 1111111100 0011122222 67788888765 5699999987754322 21111111 2222 2566
Q ss_pred EEEEEECCC
Q psy4869 637 IIMSASSDK 645 (2435)
Q Consensus 637 ~Lasgs~Dg 645 (2435)
+++.|+.++
T Consensus 265 i~v~GG~~~ 273 (308)
T 1zgk_A 265 IYVLGGYDG 273 (308)
T ss_dssp EEEECCBCS
T ss_pred EEEEcCcCC
Confidence 777777553
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=91.94 E-value=27 Score=42.08 Aligned_cols=208 Identities=8% Similarity=0.051 Sum_probs=113.0
Q ss_pred CCCCEEEEEe--CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC--------------CeEEEEECC
Q psy4869 372 PDGQYIASSG--YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD--------------QTLAVWDLE 435 (2435)
Q Consensus 372 pdg~~Lasgs--~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D--------------g~I~vwd~~ 435 (2435)
.+|.+|+-.. .++.|...+..+.... .+.. ..+ --++++|.+|+-+... ..|+..+++
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~--~l~~--~~~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIH--KLSN--DTA--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCE--EEEE--EEE--EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCE--EccC--Cce--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 4566666554 3566666665543221 1111 112 2346788888776542 468888887
Q ss_pred CCceEEEEeccCccccccCcccCCCeEEEEE---eCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEec-CC
Q psy4869 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASG---SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI-DN 511 (2435)
Q Consensus 436 tg~~v~~l~~h~~~v~sv~~~~~~~~llasg---s~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~-dg 511 (2435)
.++........ ...+.+.+..+..+- ..+..|...++..........+.. .+++++++.|+-.+. ..
T Consensus 97 g~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 97 GHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp SCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 66543322221 124556776666554 344556666666444332223222 457788998887665 67
Q ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCC--cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEE
Q psy4869 512 DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN--TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg--~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~ 589 (2435)
.|++.++..+.....+. +... ..+.|++.+|+-...++ .|..-++. +.....+... .+ ..|
T Consensus 168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld-----G~~~~~Lt~~------~~--~~~ 230 (302)
T 3s25_A 168 QLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN-----NPNPVVLTEA------NI--EHY 230 (302)
T ss_dssp CEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSS-----SCCCEECSCS------CE--EEE
T ss_pred eEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECC-----CCCeEEEeCC------Cc--ceE
Confidence 89999987765443333 2232 34669999888665443 34444443 2222223211 22 347
Q ss_pred cCCCCEEEEecC--CCeEEEEECC
Q psy4869 590 SVSGLYVTAGSA--DKCVYIWDTT 611 (2435)
Q Consensus 590 spdg~~Lasgs~--Dg~V~iwd~~ 611 (2435)
+|+|++|.-++. .+.|..-++.
T Consensus 231 ~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 231 NVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEETTEEEEEECSSSCEEEEEETT
T ss_pred EECCCEEEEEECCCCcEEEEEECC
Confidence 888888876532 3556666654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=91.65 E-value=38 Score=43.31 Aligned_cols=108 Identities=11% Similarity=0.139 Sum_probs=62.6
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE--EEec------cCCCEEEEEEccC---CCEEEEEeC--------
Q psy4869 1084 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK--SLLA------HEDSVTGVTFVPK---THYFFTTSK-------- 1144 (2435)
Q Consensus 1084 ~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~--~l~~------h~~~V~~v~fsp~---~~~l~s~s~-------- 1144 (2435)
....|+|.|+|+++++-...+.|++++..+++... .+.. .......|+|+|+ +..|+++..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 45799999999977754333478888866565322 2211 2456789999995 555555442
Q ss_pred -----CCcEEEEeCCCcc-eeEEEEEEEe-ec-ccccCeEEEEEeCCCCEEEEEe
Q psy4869 1145 -----DGRVKQWDADNFE-RIVTLHFFIS-LY-GHKLPVLSLDMSYDSTLIATGS 1191 (2435)
Q Consensus 1145 -----Dg~V~iwD~~~~~-~~~~~~~~~~-~~-~h~~~V~~l~~s~dg~~l~sgs 1191 (2435)
...|..|+..... .+.....+.. +. ........|+|.+||.++++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2356666554321 1111111111 11 2234578999999998777654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=91.19 E-value=4.5 Score=49.00 Aligned_cols=223 Identities=15% Similarity=0.166 Sum_probs=109.2
Q ss_pred CCcEEEEec-----CCcEEEEeCCCCceeEE--EeCCCeEEEEEEecCCCEEEEEeC----C-----CeEEEEEccCCce
Q psy4869 896 DNLALVSAC-----ASQVKIWNRPSLSCLRT--IDTGSYALSVCFVPGDRHVLVGTK----D-----GRLLIVDIGAGEI 959 (2435)
Q Consensus 896 dg~~la~g~-----~~~V~Iwd~~~~~~~~~--l~~~~~v~~vafspdg~~Lavg~~----d-----g~V~vwd~~sg~~ 959 (2435)
++..++.|+ .+.+.+||..+.+.... ++.+..-.+++. .+++.++.|+. + ..+.+||+.+++-
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 445555554 16889999887654432 222222122232 36666666654 2 4688999887763
Q ss_pred ee--cccccccceeEEEEecCCCCCCCcCCcceEEEEEeCC-----CeEEEEEcccccccccccccccccccccceeeee
Q psy4869 960 LE--DIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGD-----KSVKLWQLELVSVNREADEETKDVSRSHKVLSLL 1032 (2435)
Q Consensus 960 v~--~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~D-----g~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 1032 (2435)
.. .++..... .+++.. ++ ..++.|+.+ ..+.++|.....+... .
T Consensus 103 ~~~~~~p~~r~~-~~~~~~-~~----------~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--------~--------- 153 (308)
T 1zgk_A 103 SPCAPMSVPRNR-IGVGVI-DG----------HIYAVGGSHGCIHHNSVERYEPERDEWHLV--------A--------- 153 (308)
T ss_dssp EECCCCSSCCBT-CEEEEE-TT----------EEEEECCEETTEECCCEEEEETTTTEEEEC--------C---------
T ss_pred eECCCCCcCccc-cEEEEE-CC----------EEEEEcCCCCCcccccEEEECCCCCeEeEC--------C---------
Confidence 22 22211111 122222 22 355666543 3455566543322110 0
Q ss_pred eccccccCCCEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCCeEEEE--EecCCcCEEEEEEcCCCCEEEEEECC--
Q psy4869 1033 HTRTLKLEEQVLCARVSPDSKLLAVSLLD-----TTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDSTLIATGSGD-- 1103 (2435)
Q Consensus 1033 ~~~~~~~~~~v~~l~~spdg~~Lavg~~d-----g~V~i~d~~~~~~~~~--l~~h~~~V~sl~~spdg~~L~Sgs~D-- 1103 (2435)
.. ........++.+ ++.+++.|+.+ ..+.+||..+.+-... +........++.+ ++++++.|+.+
T Consensus 154 -~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 227 (308)
T 1zgk_A 154 -PM-LTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQ 227 (308)
T ss_dssp -CC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred -CC-CccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCC
Confidence 00 001111222223 67777777654 4588899876543321 1111111222233 56777777664
Q ss_pred ---CcEEEEEccCCceeEE--EeccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCc
Q psy4869 1104 ---RTVKVWGLDYGDCHKS--LLAHEDSVTGVTFVPKTHYFFTTSKD-----GRVKQWDADNF 1156 (2435)
Q Consensus 1104 ---g~I~vWd~~t~~~~~~--l~~h~~~V~~v~fsp~~~~l~s~s~D-----g~V~iwD~~~~ 1156 (2435)
..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 228 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 228 DQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 4688999887653321 1111122222322 56777777754 45778887764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=4 Score=46.29 Aligned_cols=148 Identities=10% Similarity=0.029 Sum_probs=85.2
Q ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE------EEEEe--cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 490 YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV------VQKLR--GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 490 ~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~------v~~l~--~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
..+..++|+|+|.+.++ .+|.++-.+..+... -..+. +-+ .-.++.|.|+|.+.++ .||.|.-++--
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36779999999986666 788888888755221 11221 111 1467899999999888 66988877642
Q ss_pred CCCCCCc--eEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc------EEEEec-CCCCCeeEEEEc
Q psy4869 562 PYVPGER--CVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR------IAYKLP-GHNGSVNDVQFH 632 (2435)
Q Consensus 562 ~~~~~~~--~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~------~~~~l~-~h~~~V~~l~fs 632 (2435)
......- .-..+..... ..+..+.+.|+|.+.++. |+.++-....+.. ....+. +.-..-.-+.|.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred cCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 1110000 0001100000 246789999999887777 7775433322111 111111 222334457799
Q ss_pred CCCCEEEEEECCCcEEE
Q psy4869 633 PKEPIIMSASSDKTIYL 649 (2435)
Q Consensus 633 pd~~~Lasgs~Dg~I~v 649 (2435)
+++.+.++. +|.++-
T Consensus 191 ~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 191 SVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp TTSCEEEEE--TTEEEE
T ss_pred CCCcEEEEe--CCeEEe
Confidence 999877666 776653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=90.79 E-value=5.1 Score=57.01 Aligned_cols=239 Identities=11% Similarity=0.124 Sum_probs=134.9
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeE
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLL 462 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~l 462 (2435)
...|.|.|+.++......-..-. +.-.+|..+.|+.- ...++.|||+++.+.++...-.. .|.-..|......-
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~Ad----sAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVA 120 (1630)
T ss_pred CceEEEEECCCCCCcccccccch----hhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeE
Confidence 34788888876443322111111 22235555444443 47799999999887666655433 34444555544333
Q ss_pred EEEEeCCCeEEEEeCCCC-cceEeec-----CcccEEEEEECCCCCEEEEEe-------cCCeEEEEECCCCcEEEEEec
Q psy4869 463 IASGSDDCTVKVWDPRKK-NQAVSMN-----NTYQVTSVAFNDTAECVLTGG-------IDNDIKMWDLRTNSVVQKLRG 529 (2435)
Q Consensus 463 lasgs~Dg~I~vwD~~~~-~~~~~~~-----~~~~v~sv~~sp~g~~l~sgs-------~dg~V~lwD~~s~~~v~~l~~ 529 (2435)
++| +..|..|++... .+...+. ....|..-+.+++.++++..| -.|.+.+|..+.+. -+.++|
T Consensus 121 lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg 196 (1630)
T 1xi4_A 121 LVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (1630)
T ss_pred EEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH
Confidence 333 467999999642 2222221 245677788889999877543 34788999887553 234566
Q ss_pred CCCCEEEEEEc--CC-CCEEEEEEC---CCcEEEEEcCCC-CCC----CceEEEEeCcccccccCeEEEEEcCCCCEEEE
Q psy4869 530 HSDTVTGLSLS--PD-GSYILSNAM---DNTVRIWDIRPY-VPG----ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA 598 (2435)
Q Consensus 530 h~~~V~~i~~s--pd-g~~las~s~---Dg~I~lWdl~~~-~~~----~~~v~~~~~h~~~~~~~i~~v~~spdg~~Las 598 (2435)
|.+.-..+... +. ...++-+.. .+.++|-++... ... .+.+..+.... ...+-...+..++....+..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~-~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-AQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcc-cccCcceEEEeccccCEEEE
Confidence 65544333332 11 122222222 368888888642 000 11122222211 11223456777777778888
Q ss_pred ecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEc
Q psy4869 599 GSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632 (2435)
Q Consensus 599 gs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fs 632 (2435)
...-|.|.+||+.++.++..-+-....|...+-+
T Consensus 276 itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~ 309 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 309 (1630)
T ss_pred EecCceEEEEecccchhhhhccccCCceEEeccC
Confidence 8999999999999999877554444444444433
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.77 E-value=6.9 Score=47.51 Aligned_cols=172 Identities=8% Similarity=0.049 Sum_probs=84.0
Q ss_pred EEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC----CC-------eEEEEECCCCceEEEEeccCccccccC
Q psy4869 386 IFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST----DQ-------TLAVWDLEKGQRIKKMKGHSTFVNSCD 454 (2435)
Q Consensus 386 I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~----Dg-------~I~vwd~~tg~~v~~l~~h~~~v~sv~ 454 (2435)
+.+||.....=....+..............++..++.|+. ++ .+.+||..+++....-...........
T Consensus 26 ~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 105 (318)
T 2woz_A 26 AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGL 105 (318)
T ss_dssp EEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEE
T ss_pred eEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccce
Confidence 6777766433222222211122222333456777777773 11 277889887765432111111111111
Q ss_pred cccCCCeEEEEEeCC-------CeEEEEeCCCCcceEeecCc---ccEEEEEECCCCCEEEEEec------CCeEEEEEC
Q psy4869 455 PVRRGQLLIASGSDD-------CTVKVWDPRKKNQAVSMNNT---YQVTSVAFNDTAECVLTGGI------DNDIKMWDL 518 (2435)
Q Consensus 455 ~~~~~~~llasgs~D-------g~I~vwD~~~~~~~~~~~~~---~~v~sv~~sp~g~~l~sgs~------dg~V~lwD~ 518 (2435)
.. .+..+++.|+.+ ..+.+||+.+.+........ .....+. .++++++.|+. -..+.+||.
T Consensus 106 ~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~ 182 (318)
T 2woz_A 106 GE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNP 182 (318)
T ss_dssp EE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEET
T ss_pred EE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcC
Confidence 11 134666667654 35788888776543322111 1112222 36667777764 245999999
Q ss_pred CCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEEcCC
Q psy4869 519 RTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAMDN-----TVRIWDIRP 562 (2435)
Q Consensus 519 ~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~Dg-----~I~lWdl~~ 562 (2435)
.+.+-... +........++.+ +++.++.|+.++ .+.+||+..
T Consensus 183 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 183 KKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred CCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence 88754332 2111111122222 567777776543 466788764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.25 E-value=12 Score=45.16 Aligned_cols=202 Identities=12% Similarity=0.042 Sum_probs=95.3
Q ss_pred eEEEEECCCCceEEEE-eccCccccccCcccCCCeEEEEEeC----CC-------eEEEEeCCCCcceEee--cC-cccE
Q psy4869 428 TLAVWDLEKGQRIKKM-KGHSTFVNSCDPVRRGQLLIASGSD----DC-------TVKVWDPRKKNQAVSM--NN-TYQV 492 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l-~~h~~~v~sv~~~~~~~~llasgs~----Dg-------~I~vwD~~~~~~~~~~--~~-~~~v 492 (2435)
.+..||..+++....- ........... ...+..+++.|+. ++ .+..||+.+.+....- .. ....
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSI-VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEE-ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEE-EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 4789999888765421 11111111111 1223456666763 11 2777888765543221 11 1122
Q ss_pred EEEEECCCCCEEEEEecC-------CeEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEEC------CCcEEE
Q psy4869 493 TSVAFNDTAECVLTGGID-------NDIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAM------DNTVRI 557 (2435)
Q Consensus 493 ~sv~~sp~g~~l~sgs~d-------g~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~------Dg~I~l 557 (2435)
..+.+ ++++++.|+.+ ..+.+||..+.+-... +......-..+. .+++.++.|+. -..+.+
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEE
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEE
Confidence 22233 56777777764 3588999987654332 111100111122 36666677664 235888
Q ss_pred EEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----CeEEEEECCCCcEEE--EecCCCCCeeEEE
Q psy4869 558 WDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----KCVYIWDTTTRRIAY--KLPGHNGSVNDVQ 630 (2435)
Q Consensus 558 Wdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----g~V~iwd~~s~~~~~--~l~~h~~~V~~l~ 630 (2435)
||+... + -......... ......+. -++++++.|+.+ ..+.+||..+.+-.. .++.....-..+.
T Consensus 180 yd~~~~----~-W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 251 (318)
T 2woz_A 180 YNPKKG----D-WKDLAPMKTP-RSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS 251 (318)
T ss_dssp EETTTT----E-EEEECCCSSC-CBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE
T ss_pred EcCCCC----E-EEECCCCCCC-cccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE
Confidence 888742 1 1111111100 01111222 267777777653 357789988765332 2221111112222
Q ss_pred EcCCCCEEEEEECC
Q psy4869 631 FHPKEPIIMSASSD 644 (2435)
Q Consensus 631 fspd~~~Lasgs~D 644 (2435)
-++++++.||.+
T Consensus 252 --~~~~i~v~GG~~ 263 (318)
T 2woz_A 252 --LAGSLYAIGGFA 263 (318)
T ss_dssp --ETTEEEEECCBC
T ss_pred --ECCEEEEECCee
Confidence 245667777654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=90.14 E-value=6.9 Score=55.76 Aligned_cols=235 Identities=8% Similarity=0.039 Sum_probs=130.5
Q ss_pred CCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeC
Q psy4869 1103 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY 1182 (2435)
Q Consensus 1103 Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 1182 (2435)
...|.|.|+..+..+.+-. -.--+.-.+|..+.++.-. ...+.+||+.+...+.... ...+|.--.|-.
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~-------~~e~VvfWkWis 115 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-------MTDDVTFWKWIS 115 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc-------cCCCceEEEecC
Confidence 3478888887765432211 1122344567666665554 6899999998876665542 234566556654
Q ss_pred CCCEEEEEeCCCcEEEEEccC-CceeeEeecc----CCCEEEEEEeeCCCEEEEEE-------CCCcEEEEECCCCceEE
Q psy4869 1183 DSTLIATGSGDRTVKVWGLDY-GDCHKSLLAH----EDSVTGVTFVPKTHYFFTTS-------KDGRVKQWDADNFERIV 1250 (2435)
Q Consensus 1183 dg~~l~sgs~Dg~V~iwd~~t-~~~~~~~~~h----~~~V~~i~~spd~~~lvsgs-------~Dg~I~vwD~~~~~~v~ 1250 (2435)
+. .|+.. .+..|..|++.. ..+.+.+..| ...|..-..+++.++++..| -.|.+.+|....... .
T Consensus 116 ~~-~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q 192 (1630)
T 1xi4_A 116 LN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-Q 192 (1630)
T ss_pred CC-eeEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-h
Confidence 33 34333 245799999974 2344455555 34677777788888887665 346677777654321 1
Q ss_pred EEeeCCcccc-------cCceEEEEE----ECCCeEEEEEcccc-cccccccccccccccccceeeeeecccccccccEE
Q psy4869 1251 TLHFNPNVYL-------PLQIQVVTG----GGDKSVKLWQLELV-SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1318 (2435)
Q Consensus 1251 ~~~~~~~~~~-------~~~~~lv~g----~~d~~v~iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1318 (2435)
.+..+...|. +....+++- ...+++++-++... ........ +....... .......-.
T Consensus 193 ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k---------k~~~~~~~-~~~~~Dfpv 262 (1630)
T 1xi4_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---------KAVDVFFP-PEAQNDFPV 262 (1630)
T ss_pred hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc---------ccccccCC-cccccCcce
Confidence 1122222221 111223321 12378888888643 11000000 00000000 011234455
Q ss_pred EEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEE
Q psy4869 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLS 1361 (2435)
Q Consensus 1319 ~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~ 1361 (2435)
.+..++.-..+.+-+.-|.+++||+.++.++..-+-...+|..
T Consensus 263 ~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~ 305 (1630)
T 1xi4_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (1630)
T ss_pred EEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEE
Confidence 7778888778888999999999999998876655533333433
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.78 E-value=6.1 Score=48.87 Aligned_cols=219 Identities=10% Similarity=0.000 Sum_probs=101.7
Q ss_pred CCCEEEEEeC-CCeEEEEECCC--CceEEEEec-c-CccccccCcccCCCeEEEEEeC-C---------CeEEEEeCCCC
Q psy4869 416 DGCHIFTCST-DQTLAVWDLEK--GQRIKKMKG-H-STFVNSCDPVRRGQLLIASGSD-D---------CTVKVWDPRKK 480 (2435)
Q Consensus 416 dg~~L~s~s~-Dg~I~vwd~~t--g~~v~~l~~-h-~~~v~sv~~~~~~~~llasgs~-D---------g~I~vwD~~~~ 480 (2435)
++..++.|+. ...+.+||+.+ .+.. .+.. . .......... .+..+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 3444444443 34688888864 3332 2221 1 1111111111 13456666665 2 45888998876
Q ss_pred cceEee--c-C-cccEEEEEECCCCCEEEEEecC---------------------------------------CeEEEEE
Q psy4869 481 NQAVSM--N-N-TYQVTSVAFNDTAECVLTGGID---------------------------------------NDIKMWD 517 (2435)
Q Consensus 481 ~~~~~~--~-~-~~~v~sv~~sp~g~~l~sgs~d---------------------------------------g~V~lwD 517 (2435)
+..... . . .....++. .++++++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 533322 1 1 11222222 467778888754 5799999
Q ss_pred CCCCcEE--EEEecCCCCEEEEEEcCCCCEEEEEEC------CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEE
Q psy4869 518 LRTNSVV--QKLRGHSDTVTGLSLSPDGSYILSNAM------DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589 (2435)
Q Consensus 518 ~~s~~~v--~~l~~h~~~V~~i~~spdg~~las~s~------Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~ 589 (2435)
..+.+-. ..+......-.++... +++.++.|+. ...+.+||+... ...-......... .......+.
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~---~~~W~~~~~~~~~-~~~~~~~~~ 249 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGN---NLKWNKLAPVSSP-DGVAGGFAG 249 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC------CEEEECCCSSTT-TCCBSCEEE
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCC---CCcEEecCCCCCC-cccccceEE
Confidence 9876543 3322111110122222 5666666654 235666776311 1111111111000 001111122
Q ss_pred cCCCCEEEEecCC----------------------CeEEEEECCCC--cEEEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 590 SVSGLYVTAGSAD----------------------KCVYIWDTTTR--RIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 590 spdg~~Lasgs~D----------------------g~V~iwd~~s~--~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
..++++++.|+.+ ..+.+||+.+. +.+..+......-.++ .-++++++.||.++
T Consensus 250 ~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 250 ISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETA 327 (357)
T ss_dssp EETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECG
T ss_pred EECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCC
Confidence 3367777777732 25788998865 3444444332222222 24677888888654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.52 E-value=5.2 Score=49.52 Aligned_cols=62 Identities=5% Similarity=-0.024 Sum_probs=34.4
Q ss_pred CCcEEEEec--CCcEEEEeCCC--Cce--eEEEe-CCCeEEEEEEecCCCEEEEEeC----------CCeEEEEEccCCc
Q psy4869 896 DNLALVSAC--ASQVKIWNRPS--LSC--LRTID-TGSYALSVCFVPGDRHVLVGTK----------DGRLLIVDIGAGE 958 (2435)
Q Consensus 896 dg~~la~g~--~~~V~Iwd~~~--~~~--~~~l~-~~~~v~~vafspdg~~Lavg~~----------dg~V~vwd~~sg~ 958 (2435)
+++.++.|+ .+.+.++|... .+. +..++ .+..-.+++. -++++++.|+. -..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 555555554 36899999864 222 22222 1222222222 35666666654 2468899998876
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=87.43 E-value=20 Score=43.11 Aligned_cols=158 Identities=6% Similarity=0.043 Sum_probs=88.2
Q ss_pred CeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe----cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCE
Q psy4869 470 CTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG----IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSY 545 (2435)
Q Consensus 470 g~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs----~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~ 545 (2435)
..|+..++...+........ +..|++++++|+-.. ....|+..++.... ...+..+.. ..|+++|+.
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTE
T ss_pred CeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCE
Confidence 46777777766533322222 236778999988776 34567777776443 344443432 456788888
Q ss_pred EEEEEC-CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC--CeEEEEECCCCcEEEEecCC
Q psy4869 546 ILSNAM-DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD--KCVYIWDTTTRRIAYKLPGH 622 (2435)
Q Consensus 546 las~s~-Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D--g~V~iwd~~s~~~~~~l~~h 622 (2435)
|+-.+. ..+|.+-++.. ......+.+. .. ..+.|++++|+-...+ ..|..-++.... ...+..
T Consensus 159 iy~t~~g~~~Iy~~~l~g----~~~~~l~~~~-------~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~- 224 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTAS----QSEALFYDCN-------CY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE- 224 (302)
T ss_dssp EEEECTTTCCEEEEETTT----TEEEEEECSC-------EE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC-
T ss_pred EEEEeCCCceEEEEECCC----CCEEEEeCCC-------cc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC-
Confidence 885554 67777777752 2222222221 12 2355888888766543 356666665443 233322
Q ss_pred CCCeeEEEEcCCCCEEEEEEC--CCcEEEecCC
Q psy4869 623 NGSVNDVQFHPKEPIIMSASS--DKTIYLGESP 653 (2435)
Q Consensus 623 ~~~V~~l~fspd~~~Lasgs~--Dg~I~vWd~~ 653 (2435)
..+ ..|+|++++|+-+.. .+.|..-+++
T Consensus 225 -~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 225 -ANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp -SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred -CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 223 347888888876543 2445554444
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=84.79 E-value=87 Score=38.90 Aligned_cols=175 Identities=7% Similarity=-0.019 Sum_probs=83.6
Q ss_pred CEEEEEeCCCeEEEEecCC---ceeeEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCC----eEEEEECCCCceEEEEecc
Q psy4869 375 QYIASSGYDRQIFIWSVYG---ECENIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQ----TLAVWDLEKGQRIKKMKGH 446 (2435)
Q Consensus 375 ~~Lasgs~Dg~I~iwd~~~---~~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg----~I~vwd~~tg~~v~~l~~h 446 (2435)
..|..|+..| +.+++... ....... ......|.+|++.| +...|+++...+ .|...+ +.|+....+...
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 4667777777 44444322 2222211 12346799999998 344555555554 343332 234333332210
Q ss_pred --------------CccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCc--ceEee-----------------cCcccE
Q psy4869 447 --------------STFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKN--QAVSM-----------------NNTYQV 492 (2435)
Q Consensus 447 --------------~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~--~~~~~-----------------~~~~~v 492 (2435)
...|.++.+.+.+ +..+..+...+.|...+-.... .+... .....+
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1134456666532 2334444444544444322111 11100 012357
Q ss_pred EEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEEec-----C--------CCCEEEEEEcCC-CCEEEEEECCC
Q psy4869 493 TSVAFNDT-AECVLTGGIDNDIKMWDLRTNSVVQKLRG-----H--------SDTVTGLSLSPD-GSYILSNAMDN 553 (2435)
Q Consensus 493 ~sv~~sp~-g~~l~sgs~dg~V~lwD~~s~~~v~~l~~-----h--------~~~V~~i~~spd-g~~las~s~Dg 553 (2435)
.+|.++|. ...|+++..++.|+..+- .++....+.. + ...+.+|.+.|+ ...|+.+...+
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 89999984 455666665565555432 1222222210 0 124899999986 46677766554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=84.65 E-value=12 Score=51.01 Aligned_cols=201 Identities=10% Similarity=0.123 Sum_probs=103.8
Q ss_pred cCCCEEEEEeCC----CeEEEEECCCCceEEEE-e-----ccCccc-cccCcccCCCeEEEEEeCCC------eEEEEeC
Q psy4869 415 TDGCHIFTCSTD----QTLAVWDLEKGQRIKKM-K-----GHSTFV-NSCDPVRRGQLLIASGSDDC------TVKVWDP 477 (2435)
Q Consensus 415 ~dg~~L~s~s~D----g~I~vwd~~tg~~v~~l-~-----~h~~~v-~sv~~~~~~~~llasgs~Dg------~I~vwD~ 477 (2435)
.++..++.|+.+ ..+.+||..+++....- . ...... .++.....+..+++.|+.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 355666666643 35889998887765443 2 111111 11222221446777777543 4788888
Q ss_pred CCCcceEee--cCcccEEEEEECCCCCEEEEEecCC--eEEEEECCCCcEEEEE-----ecCCCCEEEEEEcCC-CCEEE
Q psy4869 478 RKKNQAVSM--NNTYQVTSVAFNDTAECVLTGGIDN--DIKMWDLRTNSVVQKL-----RGHSDTVTGLSLSPD-GSYIL 547 (2435)
Q Consensus 478 ~~~~~~~~~--~~~~~v~sv~~sp~g~~l~sgs~dg--~V~lwD~~s~~~v~~l-----~~h~~~V~~i~~spd-g~~la 547 (2435)
.+......- .....-.+++.-.++++++.|+.++ .+.+||..+.+-...- ........++.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 775433221 1111122333334788888887655 7999999887543221 111122233555555 66777
Q ss_pred EEEC--C-----CcEEEEEcCCCCCCCc-eEEEEeCcccccccCeEEEEEcCCCCEEEEecC--------CCeEEEEECC
Q psy4869 548 SNAM--D-----NTVRIWDIRPYVPGER-CVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA--------DKCVYIWDTT 611 (2435)
Q Consensus 548 s~s~--D-----g~I~lWdl~~~~~~~~-~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~--------Dg~V~iwd~~ 611 (2435)
.|+. + ..+.+||+........ .-......... ...-..+....++++++.|+. ...+.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~-~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF-QRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG-CCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC-CcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 3588899875321000 01111111000 011112233333777888874 3469999998
Q ss_pred CCcEE
Q psy4869 612 TRRIA 616 (2435)
Q Consensus 612 s~~~~ 616 (2435)
+.+-.
T Consensus 635 t~~W~ 639 (695)
T 2zwa_A 635 SETLT 639 (695)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 87654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=83.92 E-value=1.1e+02 Score=39.21 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=34.5
Q ss_pred eEEEEEEecCCC-EEEEEeCCCeEEEEEccCCc---eeeccc---c------cccceeEEEEecC
Q psy4869 927 YALSVCFVPGDR-HVLVGTKDGRLLIVDIGAGE---ILEDIP---A------HSQELWSVAMLPD 978 (2435)
Q Consensus 927 ~v~~vafspdg~-~Lavg~~dg~V~vwd~~sg~---~v~~~~---~------h~~~V~sv~~s~d 978 (2435)
....|+|.|||+ .|+++...|.|++++..... .+..++ + .......|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 456899999996 67777889999999753221 222221 1 1346788999986
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=83.48 E-value=42 Score=38.16 Aligned_cols=145 Identities=12% Similarity=-0.021 Sum_probs=81.7
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCce------EEEEe-ccCccccccCcccCCCeEEEEEeCCCeEEEEeCC
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR------IKKMK-GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR 478 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~------v~~l~-~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~ 478 (2435)
..+.+++|+|+|.+.++ .+|.++-.+..++.. -..+- ..-..-..+.|.+++..+++ .||.|.-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav---~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV---SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE---ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe---CCCEEEEeCCC
Confidence 47789999998875444 677766666544211 11111 01111345666777754443 55888877764
Q ss_pred CCcceEe------ec--CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCc------EEEEEe-cCCCCEEEEEEcCCC
Q psy4869 479 KKNQAVS------MN--NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNS------VVQKLR-GHSDTVTGLSLSPDG 543 (2435)
Q Consensus 479 ~~~~~~~------~~--~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~------~v~~l~-~h~~~V~~i~~spdg 543 (2435)
+.....- +. .=..+..|.|.|+|.+.++. ||.++-.....+. ....+. .......-+.|.++|
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 3221111 10 11357999999999977776 7776543333211 111221 333345557799999
Q ss_pred CEEEEEECCCcEEEEEcC
Q psy4869 544 SYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 544 ~~las~s~Dg~I~lWdl~ 561 (2435)
...+.. ++ ++|-..
T Consensus 194 ~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 194 TLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp CEEEEE--TT--EEEEES
T ss_pred cEEEEe--CC--eEEecC
Confidence 888876 66 455443
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=80.67 E-value=1.4e+02 Score=38.20 Aligned_cols=233 Identities=13% Similarity=0.136 Sum_probs=113.2
Q ss_pred EEEEEECCCCC-EEEEEeCCCeEEEEecCCce--eeEEEee---------CCCCCeeEEEEccC---CCEEEEE-eC--C
Q psy4869 365 IFCSKYHPDGQ-YIASSGYDRQIFIWSVYGEC--ENIGVMS---------GHTGAVMDLKFSTD---GCHIFTC-ST--D 426 (2435)
Q Consensus 365 V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~--~~~~~l~---------~h~~~V~~l~~s~d---g~~L~s~-s~--D 426 (2435)
-..|+|.|+|. .|+.+...|.|++++..+.. ..+..+. ...+....|+|+|+ ..+|+.. +. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 35789999996 45556789999999754321 1112111 11457889999996 2344433 22 1
Q ss_pred ----------CeEEEEECCC----------CceEEEEe--ccCccccccCcccCCCeEEEEEeCC---------------
Q psy4869 427 ----------QTLAVWDLEK----------GQRIKKMK--GHSTFVNSCDPVRRGQLLIASGSDD--------------- 469 (2435)
Q Consensus 427 ----------g~I~vwd~~t----------g~~v~~l~--~h~~~v~sv~~~~~~~~llasgs~D--------------- 469 (2435)
..|.-|.+.. .+.+..+. ........+.|.|++..++.+|...
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~ 175 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDF 175 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSC
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCC
Confidence 1344455532 12333332 2223456788999986666665432
Q ss_pred -CeEEEEeCCCC---------------------cceEeecCcccEEEEEECCC-----CC-EEEEEecCC----eEEEEE
Q psy4869 470 -CTVKVWDPRKK---------------------NQAVSMNNTYQVTSVAFNDT-----AE-CVLTGGIDN----DIKMWD 517 (2435)
Q Consensus 470 -g~I~vwD~~~~---------------------~~~~~~~~~~~v~sv~~sp~-----g~-~l~sgs~dg----~V~lwD 517 (2435)
|.|.=.|.... ..+....+. ....++|+|. |+ +++.+...| .-.|..
T Consensus 176 ~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~ 254 (463)
T 2wg3_C 176 TGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQ 254 (463)
T ss_dssp TTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEEEEE
T ss_pred CeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCeEee
Confidence 22333344331 112222333 2457889986 34 344443212 123333
Q ss_pred CCCC------cEEEEEecCC-CCEEEEEEcCC-------CCEEEEEECCCcEEEEEcCCCCCCCceEEEE-eCc----cc
Q psy4869 518 LRTN------SVVQKLRGHS-DTVTGLSLSPD-------GSYILSNAMDNTVRIWDIRPYVPGERCVKVM-SGH----QH 578 (2435)
Q Consensus 518 ~~s~------~~v~~l~~h~-~~V~~i~~spd-------g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~-~~h----~~ 578 (2435)
+..+ .++..+..|. ..+..+.|-.. |.+| .+...+.|....+........ ...+ .+. ..
T Consensus 255 i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~-~~~~~~g~~~~~~~ 332 (463)
T 2wg3_C 255 IIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQ-EKPLCLGTSGSCRG 332 (463)
T ss_dssp EC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCE-EEEECEEETTSSCS
T ss_pred eccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceee-EEEeecCCcccccc
Confidence 3322 2344444332 46778887542 3344 445556655555542211111 1111 110 01
Q ss_pred ccccCeEEEEEcCCCCEEEEec
Q psy4869 579 NFEKNLLRCAWSVSGLYVTAGS 600 (2435)
Q Consensus 579 ~~~~~i~~v~~spdg~~Lasgs 600 (2435)
.....+..+...|||.++++-.
T Consensus 333 ~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 333 YFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CCCSEEEEEEECTTCCEEEEEE
T ss_pred cccCcceEEEECCCCCEEEEec
Confidence 1124678888999988766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2435 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-42 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-30 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-28 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-27 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-27 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-27 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-23 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-22 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-40 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-39 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-35 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-32 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-31 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-30 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-29 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-29 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-28 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-21 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-36 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-28 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-27 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-26 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-24 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-24 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-22 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-18 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-08 | |
| d1gmya_ | 254 | d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens | 1e-34 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-32 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-29 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-27 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-23 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-21 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-21 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-19 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-04 | |
| g1k3b.1 | 233 | d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase | 5e-30 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-28 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-22 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-20 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-17 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-16 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-14 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| g8pch.1 | 228 | d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax | 6e-27 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-25 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-21 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-21 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-18 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-18 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-25 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-22 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-21 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-19 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-19 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-25 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-18 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-18 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-17 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-14 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1m6da_ | 214 | d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta | 3e-25 | |
| d2h7ja1 | 217 | d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa | 1e-24 | |
| d1ppoa_ | 216 | d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca | 4e-24 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-24 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-23 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-21 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-18 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-18 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-17 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-16 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-14 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-13 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-08 | |
| d1me4a_ | 215 | d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56 | 1e-23 | |
| d1cqda_ | 216 | d.3.1.1 (A:) Proline-specific cysteine protease {G | 1e-23 | |
| d2oula1 | 241 | d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip | 2e-23 | |
| d2r6na1 | 215 | d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa | 3e-23 | |
| d1s4va_ | 224 | d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor | 4e-23 | |
| d1iwda_ | 215 | d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia | 5e-23 | |
| d1deua_ | 275 | d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens | 8e-23 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-22 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-19 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-17 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-16 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-16 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-11 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1yala_ | 218 | d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [ | 5e-22 | |
| d1fh0a_ | 221 | d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens | 6e-22 | |
| d1o0ea_ | 208 | d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv | 1e-21 | |
| d1aeca_ | 218 | d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi | 2e-21 | |
| d1khqa_ | 212 | d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId | 3e-21 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-21 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-17 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-17 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-17 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-15 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-19 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-16 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-15 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-14 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-19 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-16 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-15 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-14 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-14 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-13 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-10 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-10 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-10 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-19 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-15 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-14 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-13 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-13 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-18 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-16 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-12 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-12 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-04 | |
| d1xkga1 | 302 | d.3.1.1 (A:4-305) Major mite fecal allergen der p | 5e-18 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-18 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-15 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-15 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-12 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1cs8a_ | 316 | d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens | 2e-17 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-15 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-15 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-14 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-13 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-13 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-11 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-10 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-09 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 5e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-13 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-12 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-10 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-10 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-11 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-08 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-07 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.003 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-10 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-09 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-08 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 6e-08 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-06 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 8e-10 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 1e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.003 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 8e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 3e-04 | |
| d1k32a2 | 281 | b.68.7.1 (A:39-319) Tricorn protease N-terminal do | 9e-05 | |
| d1acca_ | 722 | f.11.1.1 (A:) Anthrax protective antigen {Anthrax | 8e-04 | |
| d1acca_ | 722 | f.11.1.1 (A:) Anthrax protective antigen {Anthrax | 0.001 | |
| d1acca_ | 722 | f.11.1.1 (A:) Anthrax protective antigen {Anthrax | 0.002 | |
| d1q7fa_ | 279 | b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D | 0.001 | |
| d2hqsa1 | 269 | b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 158 bits (399), Expect = 1e-42
Identities = 58/341 (17%), Positives = 122/341 (35%), Gaps = 11/341 (3%)
Query: 313 QELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNL-FAPIMLLEGHGGEIFCSKYH 371
+LR + + KN + + ++ ++ + L GH +I+ +
Sbjct: 5 DQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG 64
Query: 372 PDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431
D + + S+ D ++ IW Y + + + VM ++ G ++ D ++
Sbjct: 65 TDSRLLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 432 WDLEKGQRIKKMKGHST---FVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN 488
++L+ + ++ SC ++ S D + +
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH 183
Query: 489 TYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILS 548
T V S++ ++G D K+WD+R Q GH + + P+G+ +
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 549 NAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIW 608
+ D T R++D+R N + ++S SG + AG D +W
Sbjct: 244 GSDDATCRLFDLRADQELMTY------SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 609 DTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
D A L GH+ V+ + + + S D + +
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 122 bits (305), Expect = 3e-30
Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 4/202 (1%)
Query: 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHI 420
G + S + + +GHTG VM L + D
Sbjct: 140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 421 FTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK 480
+ + D + +WD+ +G + GH + +N+ G A+GSDD T +++D R
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRAD 258
Query: 481 NQAVSMNNTY---QVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGL 537
+ ++ ++ +TSV+F+ + +L G D + +WD L GH + V+ L
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Query: 538 SLSPDGSYILSNAMDNTVRIWD 559
++ DG + + + D+ ++IW+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 116 bits (291), Expect = 2e-28
Identities = 64/332 (19%), Positives = 120/332 (36%), Gaps = 33/332 (9%)
Query: 912 NRPSLSCLRTIDTGSYA-LSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQEL 970
R + RT+ ++ + R ++ ++DG+L+I D + IP S +
Sbjct: 41 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 971 WSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLS 1030
+ A P + L ++ + +T++ +
Sbjct: 101 MTCAYAPSG---------------------NYVACGGLDNICSIYNLKTREGNVRV---- 135
Query: 1031 LLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDM 1090
+R L L D + S DTT ++ ++T + + GH V+SL +
Sbjct: 136 ---SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192
Query: 1091 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150
+ D+ L +G+ D + K+W + G C ++ HE + + F P + F T S D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1210
+D + S + S+ S L+ G D VW D L
Sbjct: 253 FDLRADQE----LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 1211 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1242
H++ V+ + T S D +K W+
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 112 bits (281), Expect = 3e-27
Identities = 66/352 (18%), Positives = 115/352 (32%), Gaps = 31/352 (8%)
Query: 1038 KLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTL 1096
+L+ Q+ AR + D+ L ++ V + T + +L GH + ++ DS L
Sbjct: 13 QLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRR---TLRGHLAKIYAMHWGTDSRL 69
Query: 1097 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1156
+ + S D + +W + ++ V + P +Y D ++
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 1157 ERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1216
E LS D I T SGD T +W ++ G + H
Sbjct: 130 EGN---VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Query: 1217 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN-----VYLPLQIQVVTGGG 1271
V ++ P T F + + D K WD T + + + P TG
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 1272 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV 1331
D + +L+ L+ + + S +LL
Sbjct: 247 DATCRLFD-------------------LRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 1332 SLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1383
D ++ L GH V L ++ D +ATGS D +K+W
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 112 bits (281), Expect = 4e-27
Identities = 48/321 (14%), Positives = 95/321 (29%), Gaps = 37/321 (11%)
Query: 1116 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPV 1175
++L H + + + + + S+DG++ WD+ ++ + V
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP------LRSSWV 100
Query: 1176 LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFT---- 1231
++ + +A G D ++ L + + + TG +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 1232 ----TSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNR 1287
T ++ T P V+G D S KLW +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR------ 214
Query: 1288 EADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK 1347
+ + H E + P+ A D T ++F L +
Sbjct: 215 --EGMCRQTFTGH-------------ESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 1348 FFISLYGHKL--PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1405
++ + + S+ S L+ G D VW D L H++ V+ +
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319
Query: 1406 FVPKTHYFFTTSKDGRVKQWD 1426
T S D +K W+
Sbjct: 320 VTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 112 bits (281), Expect = 5e-27
Identities = 54/321 (16%), Positives = 100/321 (31%), Gaps = 36/321 (11%)
Query: 882 QGHHSEVRALAFSSDNLALVSACAS-QVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH +++ A+ + +D+ LVSA ++ IW+ + + + I S + C +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 941 LVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
+ + + +N G
Sbjct: 112 VAC---------------------------GGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 1001 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL 1060
L + T V+ ++PD++L
Sbjct: 145 YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV--WGLDYGDCHK 1118
D + K++ + + GH+ + ++ + ATGS D T ++ D
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSL 1178
S +T V+F D WDA +R L GH V L
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA------GHDNRVSCL 318
Query: 1179 DMSYDSTLIATGSGDRTVKVW 1199
++ D +ATGS D +K+W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 100 bits (248), Expect = 7e-23
Identities = 42/273 (15%), Positives = 78/273 (28%), Gaps = 15/273 (5%)
Query: 1167 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1226
+L GH + ++ DS L+ + S D + +W + ++ V + P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 1227 HYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVN 1286
+Y D ++ E G L
Sbjct: 110 NYVACGGLDNICSIYNLKTREGN-------------VRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 1287 READEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF 1346
+ T V+ ++PD++L D + K++ +
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 1347 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV--WGLDYGDCHKSLLAHEDSVTGV 1404
+ GH+ + ++ + ATGS D T ++ D S +T V
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 1405 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1437
+F D WDA +R L
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 97.5 bits (241), Expect = 7e-22
Identities = 42/157 (26%), Positives = 65/157 (41%)
Query: 75 KHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLAT 134
+V LS D+ + S K + + TFTGH+S I I + P G+ AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 135 GSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD 194
GS D L+D+ A+ L S + +++ D +WDA D
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 195 CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+A H V + V + + +GS D+ LK+WN
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.6 bits (205), Expect = 2e-17
Identities = 51/350 (14%), Positives = 99/350 (28%), Gaps = 36/350 (10%)
Query: 85 HDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLW 144
D++ + + + T T GH + I + + L + S+D +++W
Sbjct: 26 ADATLSQITNNIDPVGRIQMRTR---RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW 82
Query: 145 DVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLT 204
D +H + + + ++V D I++ T + ++ L
Sbjct: 83 DSYTTNKVHAIPLRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELA 140
Query: 205 EVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTV 264
G + + D L + L V
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 265 SKIEVQIINELKNLSTGKKKWLQVFRL-ALCISSITLNIDDFAFGIDTTQELRTRSMKRK 323
S L ++ G Q F I++I + T S
Sbjct: 201 SGACDASAK-LWDVREG--MCRQTFTGHESDINAICFFPNG--------NAFATGSDDAT 249
Query: 324 NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYD 383
+ ++ G TS F+ G+ + + D
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSK------------------SGRLLLAGYDD 291
Query: 384 RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433
+W + + GV++GH V L + DG + T S D L +W+
Sbjct: 292 FNCNVWDAL-KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.7 bits (200), Expect = 1e-16
Identities = 45/296 (15%), Positives = 96/296 (32%), Gaps = 15/296 (5%)
Query: 441 KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFND 499
+ ++GH + + +LL S S D + +WD N+ ++ + V + A+
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLL-VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 500 TAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559
+ V GG+DN +++L+T ++ T + D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT----GYLSCCRFLDDNQIVTSSGD 163
Query: 560 IRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKL 619
+ + + + + + L+V+ G+ D +WD
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS-GACDASAKLWDVREGMCRQTF 222
Query: 620 PGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHR 679
GH +N + F P + S D T L + + + + ++ K
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 680 QILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSG 735
++L +D +++ R L + S L G + +G
Sbjct: 283 RLLLAGYDDFNCNVW--------DALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.1 bits (175), Expect = 2e-13
Identities = 43/258 (16%), Positives = 93/258 (36%), Gaps = 13/258 (5%)
Query: 1206 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQ 1265
++L H + + + + + S+DG++ WD+ ++ + +
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-------- 98
Query: 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD 1325
+ D + + ++ +R L L D
Sbjct: 99 -----WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 1326 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1385
+ S DTT ++ ++T + + GH V+SL ++ D+ L +G+ D + K+W +
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 1386 DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNS 1445
G C ++ HE + + F P + F T S D + +D + ++T +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 1446 PMNSVHLNSCPALEASND 1463
S + L +D
Sbjct: 274 TSVSFSKSGRLLLAGYDD 291
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.5 bits (171), Expect = 6e-13
Identities = 57/321 (17%), Positives = 107/321 (33%), Gaps = 32/321 (9%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
L G ++ + DS L A +G L + TT+ + S + Y P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 131 RLATGSKDTDIVLWDVVAECGLHR-LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
+A G D ++++ G R G + + +V+S+ DT +WD
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 190 ADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQ 249
+TG T H +V + + + +SG+ DA K+W+VR+ T +
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SD 228
Query: 250 LNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGI 309
+N + + + + + I+S++ +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-GITSVSFSKSG----- 282
Query: 310 DTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSK 369
+ L V+D K + L GH + C
Sbjct: 283 ---RLLLAGYDDFN---CNVWDALKADRAGV-----------------LAGHDNRVSCLG 319
Query: 370 YHPDGQYIASSGYDRQIFIWS 390
DG +A+ +D + IW+
Sbjct: 320 VTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.9 bits (120), Expect = 1e-06
Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
Query: 1312 KLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTL 1370
+L+ Q+ AR + D+ L ++ V + T + +L GH + ++ DS L
Sbjct: 13 QLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRR---TLRGHLAKIYAMHWGTDSRL 69
Query: 1371 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430
+ + S D + +W + ++ V + P +Y D ++
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.2 bits (113), Expect = 8e-06
Identities = 34/342 (9%), Positives = 78/342 (22%), Gaps = 49/342 (14%)
Query: 614 RIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTM 673
R L GH + + + +++SAS D G++
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQD-----------------------GKLIIW 82
Query: 674 VNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILR 733
+ ++ + V C S + S
Sbjct: 83 DSYTTNKVHAIPLRSSWV---MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139
Query: 734 SGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQ 793
+G + + D L+ T +++T +
Sbjct: 140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 794 MEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALL 853
+ + D G + I ++ G A
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTG------------HESDINAICFFPNGN---AFATG 244
Query: 854 LNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACA-SQVKIWN 912
++ + L + + L + + +++FS L++ +W+
Sbjct: 245 SDDATCRLFD------LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 913 RPSLSCLRTIDTGSYA-LSVCFVPGDRHVLVGTKDGRLLIVD 953
+ + V G+ D L I +
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 149 bits (376), Expect = 8e-40
Identities = 66/312 (21%), Positives = 123/312 (39%), Gaps = 29/312 (9%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH + +HP + S+ D I +W + + GHT +V D+ F G
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSG 71
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ +CS D T+ +WD + + I+ M GH V+S + G ++++ D
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 478 RKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGL 537
+ V V N + + D +++W + T +LR H V +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 538 SL--------------------SPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQ 577
S G ++LS + D T+++WD+ C+ + GH
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS----TGMCLMTLVGHD 247
Query: 578 HNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPI 637
+ + + G ++ + + DK + +WD +R L H V + FH P
Sbjct: 248 N----WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 638 IMSASSDKTIYL 649
+++ S D+T+ +
Sbjct: 304 VVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 148 bits (374), Expect = 2e-39
Identities = 78/350 (22%), Positives = 130/350 (37%), Gaps = 44/350 (12%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
+L GH+ PV + +++ + S D T+KVW + GD ++L H DSV ++F
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
+ S D +K WD F +++GH V S+ + + I + S D+T+
Sbjct: 72 KLLASCSADMTIKLWDFQGF------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNP 1256
K+W + G C K+ H + V V + S D V+ W E L +
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 1257 NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1316
+V + + ++
Sbjct: 186 HVVECISWAPES--------------------------------------SYSSISEATG 207
Query: 1317 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG 1376
+ L D T+K++ + T ++L GH V + I + +
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 1377 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
D+T++VW C K+L AHE VT + F Y T S D VK W+
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 137 bits (344), Expect = 1e-35
Identities = 71/311 (22%), Positives = 125/311 (40%), Gaps = 22/311 (7%)
Query: 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRG 459
+SGH V + F + + S D T+ VWD E G + +KGH+ V G
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 460 QLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519
+LL + +D + + + V+SV+ + +++ D IKMW+++
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH- 578
T V+ GH + V + + DG+ I S + D TVR+W + C + H+H
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK----ECKAELREHRHV 187
Query: 579 ---------------NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHN 623
+ G ++ +GS DK + +WD +T L GH+
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 247
Query: 624 GSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILC 683
V V FH I+S + DKT+ + + + L + + V ++ K +
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWD--YKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305
Query: 684 CHGNDNVVDLF 694
D V ++
Sbjct: 306 TGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 126 bits (317), Expect = 5e-32
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 21/224 (9%)
Query: 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST 415
+ GH + P+G +I S+ D+ I +W V + +GH V ++ +
Sbjct: 95 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKTFTGHREWVRMVRPNQ 153
Query: 416 DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCD-------------------PV 456
DG I +CS DQT+ VW + + +++ H V
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213
Query: 457 RRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKM 515
+ + SGS D T+K+WD +++ + V V F+ + +L+ D +++
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 273
Query: 516 WDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559
WD + ++ L H VT L Y+++ ++D TV++W+
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 124 bits (310), Expect = 4e-31
Identities = 61/333 (18%), Positives = 109/333 (32%), Gaps = 57/333 (17%)
Query: 930 SVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQ 989
V F P ++ ++D + + D G+ + H+ + ++
Sbjct: 22 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81
Query: 990 IQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1049
+ +
Sbjct: 82 TIKLWDFQGFECIRTMHGHDHNVS-------------------------------SVSIM 110
Query: 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1109
P+ + + D T+K++ + T + GH+ V + + D TLIA+ S D+TV+VW
Sbjct: 111 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
Query: 1110 GLDYGDCHKSLLAHEDSVTGVTF--------------------VPKTHYFFTTSKDGRVK 1149
+ +C L H V +++ + + S+D +K
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 1150 QWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1209
WD ++TL GH V + I + + D+T++VW C K+
Sbjct: 231 MWDVSTGMCLMTLV------GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 284
Query: 1210 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1242
L AHE VT + F Y T S D VK W+
Sbjct: 285 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 122 bits (305), Expect = 2e-30
Identities = 69/339 (20%), Positives = 129/339 (38%), Gaps = 57/339 (16%)
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
GH S V + F +VSA + +K+W+ + RT+ + ++ +
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 941 LVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
L I + + ++ + +P +V+ DK+
Sbjct: 74 LASCSADM---------TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124
Query: 1001 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL 1060
+K+W+++ H+ E V R + D L+A
Sbjct: 125 IKMWEVQ--------TGYCVKTFTGHR-------------EWVRMVRPNQDGTLIASCSN 163
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--------------------LIATG 1100
D TV+++ + T + L H+ V + + +S+ + +G
Sbjct: 164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C +L+ H++ V GV F + + + D ++ WD N +
Sbjct: 224 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
TL+ H+ V SLD + + TGS D+TVKVW
Sbjct: 284 TLN------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 119 bits (299), Expect = 1e-29
Identities = 74/322 (22%), Positives = 133/322 (41%), Gaps = 53/322 (16%)
Query: 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1208
K+W E+ +L GH+ PV + +++ + S D T+KVW + GD +
Sbjct: 1 KEWIPRPPEKY-------ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER 53
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH-----FNPNVYLPLQ 1263
+L H DSV ++F + S D +K WD FE I T+H + +P
Sbjct: 54 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 1264 IQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1323
+V+ DK++K+W+++ H+ E V R +
Sbjct: 114 DHIVSASRDKTIKMWEVQ--------TGYCVKTFTGHR-------------EWVRMVRPN 152
Query: 1324 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST-------------- 1369
D L+A D TV+++ + T + L H+ V + + +S+
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212
Query: 1370 ------LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1423
+ +GS D+T+K+W + G C +L+ H++ V GV F + + + D ++
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 272
Query: 1424 QWDADNFERIVTLHICSCSLNS 1445
WD N + TL+ + S
Sbjct: 273 VWDYKNKRCMKTLNAHEHFVTS 294
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 118 bits (296), Expect = 3e-29
Identities = 71/328 (21%), Positives = 123/328 (37%), Gaps = 28/328 (8%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
+GH+S +T + + P+ + + S+D I +WD L GH + DI F
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--H 69
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ S + D +K+WD +C +TM H V V +M +++S S D +K+W
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 232 VRDRSDIDTEDKDKLSEQL------NQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKW 285
V+ + T + ++ L+ S D TV V L +
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-DQTVRVWVVATKECKAELREHRHVV 188
Query: 286 LQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDV 345
I+ + I T+ + + R+K K+ V
Sbjct: 189 ----------ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-- 236
Query: 346 GRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHT 405
+M L GH + +H G++I S D+ + +W Y + ++ H
Sbjct: 237 ------GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD-YKNKRCMKTLNAHE 289
Query: 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWD 433
V L F ++ T S DQT+ VW+
Sbjct: 290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 115 bits (288), Expect = 3e-28
Identities = 72/324 (22%), Positives = 125/324 (38%), Gaps = 17/324 (5%)
Query: 153 HRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVM 212
+ LSGH+ +T + F P +VS+++D +K+WD +TGD +T+ H V +
Sbjct: 11 YALSGHRSPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68
Query: 213 REDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQII 272
L S S D +K+W+ + I T + ++ + D I
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD------------HI 116
Query: 273 NELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDR 332
T K +Q + + D T + + S + V +
Sbjct: 117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVATK 175
Query: 333 EKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY 392
E ++++ + V S K G ++ S D+ I +W
Sbjct: 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD-V 234
Query: 393 GECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNS 452
+ + GH V + F + G I +C+ D+TL VWD + + +K + H FV S
Sbjct: 235 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 294
Query: 453 CDPVRRGQLLIASGSDDCTVKVWD 476
D + + +GS D TVKVW+
Sbjct: 295 LDFHKTAPYV-VTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.4 bits (233), Expect = 5e-21
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 22/180 (12%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQY----- 125
G + V + PN D + +A + +++ + + T + + H+ + I +
Sbjct: 139 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 198
Query: 126 ---------------DPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQ 170
G L +GS+D I +WDV L L GH + + F
Sbjct: 199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH-- 256
Query: 171 PGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVW 230
G F++S A D +++WD C KT+ AH V + + Y+++GS D +KVW
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.6 bits (210), Expect = 4e-18
Identities = 43/188 (22%), Positives = 85/188 (45%), Gaps = 18/188 (9%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G H V +S + + A + ++K + + T + TFTGH+ + +++ + G
Sbjct: 97 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 156
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFM------------------SQPG 172
+A+ S D + +W V + L H+ V+ I + S
Sbjct: 157 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 216
Query: 173 HHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232
F++S ++D +K+WD TG C T+ H V GV +++S ++D L+VW+
Sbjct: 217 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 276
Query: 233 RDRSDIDT 240
+++ + T
Sbjct: 277 KNKRCMKT 284
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.8 bits (208), Expect = 7e-18
Identities = 56/308 (18%), Positives = 104/308 (33%), Gaps = 22/308 (7%)
Query: 473 KVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532
K W PR + + VT V F+ +++ D IK+WD T + L+GH+D
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60
Query: 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592
+V +S G + S + D T+++WD + + + +
Sbjct: 61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSS--------VSIMPN 112
Query: 593 GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652
G ++ + S DK + +W+ T GH V V+ + +I S S+D+T+ +
Sbjct: 113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
Query: 653 PLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRK 712
KA LR + V + + R + K
Sbjct: 173 ATKECKA--ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 713 LKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESS 772
+ L V ++ + + +D + ++ D +
Sbjct: 231 MWDVST-------GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW-----DYKN 278
Query: 773 TRCRKRLR 780
RC K L
Sbjct: 279 KRCMKTLN 286
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.1 bits (201), Expect = 7e-17
Identities = 59/321 (18%), Positives = 127/321 (39%), Gaps = 40/321 (12%)
Query: 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTS 494
+ + GH + V ++ S S+D T+KVWD + ++ +T V
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVM-VSASEDATIKVWDYETGDFERTLKGHTDSVQD 64
Query: 495 VAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNT 554
++F+ + + + + D IK+WD + ++ + GH V+ +S+ P+G +I+S + D T
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124
Query: 555 VRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR 614
+++W+++ CVK +GH+ + G + + S D+ V +W T+
Sbjct: 125 IKMWEVQTG----YCVKTFTGHREWVR----MVRPNQDGTLIASCSNDQTVRVWVVATKE 176
Query: 615 IAYKLPGHNGSVNDVQFH--------------------PKEPIIMSASSDKTIYLGESPL 654
+L H V + + P ++S S DKTI + +
Sbjct: 177 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV-- 234
Query: 655 HCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLK 714
L V ++ + + +D + ++ + ++ ++ L
Sbjct: 235 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW--------DYKNKRCMKTLN 286
Query: 715 KKEKYESPLHCDKAGSILRSG 735
E + + L K + +G
Sbjct: 287 AHEHFVTSLDFHKTAPYVVTG 307
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.9 bits (177), Expect = 7e-14
Identities = 30/168 (17%), Positives = 66/168 (39%), Gaps = 13/168 (7%)
Query: 33 NQEGRFLATGASE-DVIIWDLRLAEKALLLPGEKH----------EALLLPGEKHEVCQL 81
NQ+G +A+ +++ V +W + E L +H + E
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211
Query: 82 SPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDI 141
L + ++K + + T + T GH + + + + G + + + D +
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 271
Query: 142 VLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
+WD + + L+ H+ +T + F +VV+ + D VK+W+
Sbjct: 272 RVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.2 bits (170), Expect = 5e-13
Identities = 52/370 (14%), Positives = 107/370 (28%), Gaps = 102/370 (27%)
Query: 62 PGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAIT 121
P EK+ L G + V ++ + S + A + ++K + +T D T GH ++
Sbjct: 7 PPEKYA---LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63
Query: 122 VIQYDPL------------------------------------------GHRLATGSKDT 139
I +D G + + S+D
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
I +W+V + +GH+ + +R + S + D V++W T +C +
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRP--NQDGTLIASCSNDQTVRVWVVATKECKAEL 181
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDE 259
H V + E SY + + + + +DK
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK-------------- 227
Query: 260 PDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRS 319
I++ ++ L T V + + + D T
Sbjct: 228 ------TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI----LSCADDKT------- 270
Query: 320 MKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIAS 379
+ V+D + ++ L H + +H Y+ +
Sbjct: 271 -------LRVWDYKNKRCMKT-----------------LNAHEHFVTSLDFHKTAPYVVT 306
Query: 380 SGYDRQIFIW 389
D+ + +W
Sbjct: 307 GSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.2 bits (152), Expect = 1e-10
Identities = 30/99 (30%), Positives = 49/99 (49%)
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1410
+L GH+ PV + +++ + S D T+KVW + GD ++L H DSV ++F
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 1411 HYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNS 1449
+ S D +K WD FE I T+H +++S
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 110
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.0 bits (102), Expect = 1e-04
Identities = 18/100 (18%), Positives = 34/100 (34%)
Query: 1393 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNSVHL 1452
+L H VT V F P + S+D +K WD + + TL + S+
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 1453 NSCPALEASNDIAELLMECLATMKEYEVECKEMTAMGKPP 1492
+ A I + ++ ++++ P
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 111
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 142 bits (357), Expect = 1e-36
Identities = 63/340 (18%), Positives = 125/340 (36%), Gaps = 35/340 (10%)
Query: 344 DVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSV------------ 391
+ + + H + C K+ DG+Y+A+ G ++ ++ V
Sbjct: 44 NPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDD 102
Query: 392 -----YGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGH 446
E N + + FS DG + T + D+ + +WD+E + + ++GH
Sbjct: 103 SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 162
Query: 447 STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLT 506
+ S D G L++ D + T + +
Sbjct: 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222
Query: 507 GGIDNDIKMWDLRTNSVVQKL-------RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559
G +D +++WD T +V++L GH D+V + + DG ++S ++D +V++W+
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282
Query: 560 IR----PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI 615
++ + +L A + + Y+ +GS D+ V WD +
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342
Query: 616 AYKLPGHNGSV------NDVQFHPKEPIIMSASSDKTIYL 649
L GH SV N P+ + + S D +
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 116 bits (290), Expect = 6e-28
Identities = 73/384 (19%), Positives = 126/384 (32%), Gaps = 55/384 (14%)
Query: 1083 LPVLSLDMSYDSTL-IATGSGDRTVKVWGLDYGDC----HKSLLAHEDSVTGVTFVPKTH 1137
+P LD+ S + ++ L H V V F
Sbjct: 16 IPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE 75
Query: 1138 YFFTTSKDGRVKQWDADNFERIVTLHF------------FISLYGHKLPVLSLDMSYDST 1185
Y T + + + + + L S L + S+ S D
Sbjct: 76 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134
Query: 1186 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1245
+ATG+ DR +++W ++ L HE + + + P + S D V+ WD
Sbjct: 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 194
Query: 1246 FERIVTL-----HFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSH 1300
+ +TL V + G D++V++W E
Sbjct: 195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE--------------TGFLV 240
Query: 1301 KVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK------------F 1348
+ L + ++ V + D + + LD +VK++ L
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 1349 FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV- 1407
++ GHK VLS+ + + I +GS DR V W G+ L H +SV V
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360
Query: 1408 -----PKTHYFFTTSKDGRVKQWD 1426
P+ + F T S D + + W
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 114 bits (286), Expect = 2e-27
Identities = 62/393 (15%), Positives = 126/393 (32%), Gaps = 62/393 (15%)
Query: 185 VKIWDADTGDCFK----TMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDT 240
+++ H + V V + YL +G + +V+ V D S +
Sbjct: 40 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR 98
Query: 241 EDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITL 300
D + + + L + P + V + K L+TG + L + +
Sbjct: 99 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI 158
Query: 301 NIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEG 360
+ + + TV + + +
Sbjct: 159 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--------------- 203
Query: 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE------CENIGVMSGHTGAVMDLKFS 414
G + DG+YIA+ DR + +W +GH +V + F+
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263
Query: 415 TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKV 474
DG + + S D+++ +W+L+ K ++
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG------------------------- 298
Query: 475 WDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV 534
+ + + V SVA E +L+G D + WD ++ + + L+GH ++V
Sbjct: 299 -----TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 353
Query: 535 TGL------SLSPDGSYILSNAMDNTVRIWDIR 561
+ SL P+ + + + D RIW +
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 111 bits (278), Expect = 2e-26
Identities = 66/405 (16%), Positives = 126/405 (31%), Gaps = 73/405 (18%)
Query: 95 TNGSLKTFSLDTTDVIS----TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAEC 150
TN ++ I H S + +++ G LATG T ++ V
Sbjct: 36 TNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGS 94
Query: 151 GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVC 210
+ RLS D ++ + + VC
Sbjct: 95 LVARLSDDSAANKDPENLNTSSSP--------------------------SSDLYIRSVC 128
Query: 211 VMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQ 270
+ +L +G+ D +++W++ +R + + S D+ V+
Sbjct: 129 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188
Query: 271 IINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVY 330
I + + I A +D V V+
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI--AAGSLDRA--------------VRVW 232
Query: 331 DREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWS 390
D E + V++ L + GH ++ + DGQ + S DR + +W+
Sbjct: 233 DSETGFLVER----------LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282
Query: 391 VYG-----------ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR 439
+ GH V+ + + + +I + S D+ + WD + G
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342
Query: 440 IKKMKGHSTFVNSCDPVRRGQL-----LIASGSDDCTVKVWDPRK 479
+ ++GH V S L + A+GS DC ++W +K
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 104 bits (259), Expect = 7e-24
Identities = 61/356 (17%), Positives = 113/356 (31%), Gaps = 43/356 (12%)
Query: 869 STDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYA 928
+ + + H S V + FS+D L + C +++ S + +
Sbjct: 46 ALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLS----- 100
Query: 929 LSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPL 988
D ++ I + + +
Sbjct: 101 -------DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR 153
Query: 989 QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV 1048
+I ++ G ++ + + + V + A
Sbjct: 154 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213
Query: 1049 SPDSKLLAVSLLDTTVKIFFLDTFKFFISL-------YGHKLPVLSLDMSYDSTLIATGS 1101
D K +A LD V+++ +T L GHK V S+ + D + +GS
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 1102 GDRTVKVWGLDYGD------------CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1149
DR+VK+W L + C + + H+D V V Y + SKD V
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 1150 QWDADNFERIVTLHFFISLYGHKLPVLSLD------MSYDSTLIATGSGDRTVKVW 1199
WD + ++ L GH+ V+S+ + + + ATGSGD ++W
Sbjct: 334 FWDKKSGNPLLMLQ------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 104 bits (258), Expect = 8e-24
Identities = 61/309 (19%), Positives = 113/309 (36%), Gaps = 29/309 (9%)
Query: 324 NDEVTVYDREKNYKVQKVQKDVGRTSNL-FAPIMLLEGHGGEIFCSKYHPDGQYIASSGY 382
N VY V ++ D + I + PDG+++A+ G
Sbjct: 82 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT-GA 140
Query: 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK 442
+ ++ + + ++ GH + L + G + + S D+T+ +WDL GQ
Sbjct: 141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 200
Query: 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN--------TYQVTS 494
+ G+ IA+GS D V+VWD +++ V S
Sbjct: 201 LSIEDGVTTVAVSPGDGKY-IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259
Query: 495 VAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG------------HSDTVTGLSLSPD 542
V F + V++G +D +K+W+L+ + + H D V ++ + +
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 319
Query: 543 GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE--KNLLRCAWSVSGLYVTAGS 600
YILS + D V WD + + ++ GH+++ + GS
Sbjct: 320 DEYILSGSKDRGVLFWDKK----SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375
Query: 601 ADKCVYIWD 609
D IW
Sbjct: 376 GDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 99.9 bits (247), Expect = 2e-22
Identities = 70/388 (18%), Positives = 122/388 (31%), Gaps = 84/388 (21%)
Query: 1027 KVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG------ 1080
+ + + ++L V C + S D + LA + T +++ + L
Sbjct: 49 REIDVELHKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANK 107
Query: 1081 ------------HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT 1128
L + S+ S D +ATG+ DR +++W ++ L HE +
Sbjct: 108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 167
Query: 1129 GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIA 1188
+ + P + S D V+ WD + +TL + D IA
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA------VSPGDGKYIA 221
Query: 1189 TGSGDRTVKVWGLDYGDCHKSL-------LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1241
GS DR V+VW + G + L H+DSV V F + S D VK W
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
Query: 1242 DADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHK 1301
+ N + +
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKD-------------------------------- 309
Query: 1302 VLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLS 1361
VL + + + + D V + + + L GH+ V+S
Sbjct: 310 --------------FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355
Query: 1362 LD------MSYDSTLIATGSGDRTVKVW 1383
+ + + + ATGSGD ++W
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.5 bits (215), Expect = 2e-18
Identities = 55/328 (16%), Positives = 105/328 (32%), Gaps = 41/328 (12%)
Query: 843 GGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVS 902
G ++ +++ SL + +L + + +R++ FS D L +
Sbjct: 80 GCNKTTQV-YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138
Query: 903 ACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILED 962
++ + I D + L G L+ G +
Sbjct: 139 GAEDRLIRIWDIENRKIVMIL--------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190
Query: 963 IPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDV 1022
Q ++++ V + G D++V++W E
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE--------------T 236
Query: 1023 SRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK--------- 1073
+ L + ++ V + D + + LD +VK++ L
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296
Query: 1074 ---FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGV 1130
++ GHK VLS+ + + I +GS DR V W G+ L H +SV V
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 356
Query: 1131 TFV------PKTHYFFTTSKDGRVKQWD 1152
P+ + F T S D + + W
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.5 bits (207), Expect = 3e-17
Identities = 62/336 (18%), Positives = 109/336 (32%), Gaps = 58/336 (17%)
Query: 1139 FFTTSKDGRVKQWDADNFERI-VTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1197
+ ++ I V LH + H V + S D +ATG ++T +
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSL---DHTSVVCCVKFSNDGEYLATGC-NKTTQ 86
Query: 1198 VWGLDYGDCHKSL------------------LAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1239
V+ + G L + + + V F P + T ++D ++
Sbjct: 87 VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 146
Query: 1240 QWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRS 1299
WD +N + ++ L + L + + + T +
Sbjct: 147 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 206
Query: 1300 HKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL------- 1352
A D K +A LD V+++ +T L
Sbjct: 207 VTT----------------VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 250
Query: 1353 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD------------CHKSLLAHEDS 1400
GHK V S+ + D + +GS DR+VK+W L + C + + H+D
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310
Query: 1401 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
V V Y + SKD V WD + ++ L
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.0 bits (198), Expect = 3e-16
Identities = 67/294 (22%), Positives = 112/294 (38%), Gaps = 40/294 (13%)
Query: 403 GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLL 462
HT V +KFS DG ++ T ++T V+ + G + ++ S
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA-------------- 104
Query: 463 IASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNS 522
DP N + S ++ + SV F+ + + TG D I++WD+
Sbjct: 105 ----------ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 154
Query: 523 VVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEK 582
+V L+GH + L P G ++S + D TVRIWD+R
Sbjct: 155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV-- 212
Query: 583 NLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP-------GHNGSVNDVQFHPKE 635
G Y+ AGS D+ V +WD+ T + +L GH SV V F
Sbjct: 213 ------SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 266
Query: 636 PIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDN 689
++S S D+++ L +K+ S + T + K + ++
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.7 bits (192), Expect = 2e-15
Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 27/175 (15%)
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVIST-------FTGHKSAITVIQYDPLGHRLATGS 136
D +A + +++ + +T ++ TGHK ++ + + G + +GS
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 137 KDTDIVLWDV------------VAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTF 184
D + LW++ + GHK + + +++S +KD
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT--QNDEYILSGSKDRG 331
Query: 185 VKIWDADTGDCFKTMAAHLTEVWGVCVMR------EDSYLISGSNDAELKVWNVR 233
V WD +G+ + H V V V E + +GS D + ++W +
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.4 bits (160), Expect = 2e-11
Identities = 50/305 (16%), Positives = 85/305 (27%), Gaps = 15/305 (4%)
Query: 1173 LPVLSLDMSYDSTL-IATGSGDRTVKVWGLDYGDC----HKSLLAHEDSVTGVTFVPKTH 1227
+P LD+ S + ++ L H V V F
Sbjct: 16 IPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE 75
Query: 1228 YFFTTSKDGRVKQWDADNFERIVTL--HFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSV 1285
Y T + + + + + L N + D ++
Sbjct: 76 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134
Query: 1286 NREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT 1345
E + + + E+ + P L D TV+I+ L T
Sbjct: 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 194
Query: 1346 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL-------LAHE 1398
+ ++L D IA GS DR V+VW + G + L H+
Sbjct: 195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 254
Query: 1399 DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNSVHLNSCPAL 1458
DSV V F + S D VK W+ N + H + ++
Sbjct: 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314
Query: 1459 EASND 1463
+ +
Sbjct: 315 ATTQN 319
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 3e-11
Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 20/174 (11%)
Query: 33 NQEGRFLATGASEDVI-IWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLA 91
+G+++A G+ + + +WD L E G K V + D +
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES---GTGHKDSVYSVVFTRDGQSVV 270
Query: 92 VAYTNGSLKTFSLDTTDVIS------------TFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ S+K ++L + S T+ GHK + + + +GSKD
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQ----PGHHFVVSSAKDTFVKIWD 189
++ WD + L L GH+ + + + P ++ + + D +IW
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.7 bits (140), Expect = 5e-09
Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 21/184 (11%)
Query: 76 HEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATG 135
++ L +L + +++ + L T T + TV G +A G
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG 223
Query: 136 SKDTDIVLWDV-------VAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIW 188
S D + +WD + +GHK + + F VVS + D VK+W
Sbjct: 224 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF--TRDGQSVVSGSLDRSVKLW 281
Query: 189 DADTGD------------CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRS 236
+ + C T H V V + D Y++SGS D + W+ + +
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341
Query: 237 DIDT 240
+
Sbjct: 342 PLLM 345
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.1 bits (136), Expect = 2e-08
Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 17/221 (7%)
Query: 33 NQEGRFLATGASEDVIIWDLRLAEKALLLPG--------EKHEALLLPGEKHEVCQLSPN 84
+ +G +LATG ++ ++ + L E P + + +
Sbjct: 71 SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130
Query: 85 HDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLW 144
D LA + ++ + ++ ++ GH+ I + Y P G +L +GS D + +W
Sbjct: 131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190
Query: 145 DVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM----- 199
D+ LS G +S ++ + + D V++WD++TG + +
Sbjct: 191 DLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 248
Query: 200 --AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDI 238
H V+ V R+ ++SGS D +K+WN+++ ++
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289
|
| >d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin B species: Human (Homo sapiens) [TaxId: 9606]
Score = 132 bits (333), Expect = 1e-34
Identities = 75/294 (25%), Positives = 102/294 (34%), Gaps = 98/294 (33%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P +FDARE+WPQC I ++ DQG+C SCW
Sbjct: 2 LPASFDAREQWPQCP-TIKEIRDQGSCGSCW----------------------------- 31
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHL-ICSCTNCTRMHTKTPMSMCMGGDSAAA 2292
A A +SDRICI + V +S + L C + C C GG A A
Sbjct: 32 ---AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCG--------DGCNGGYPAEA 80
Query: 2293 WMYWINAGLVDGGD---------------------------------------------- 2306
W +W GLV GG
Sbjct: 81 WNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPT 140
Query: 2307 ------YGTHDVSMGRYIEGIGHAASVMGSSNPEVN---NFEKVIRLYSCEGSINPRYIH 2357
YG + S+ + I G + +F + H
Sbjct: 141 YKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGH 200
Query: 2358 SVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAK 2411
+++I+GWG PYWL NS+N WG+ G FKI RG + C IE V+AG +
Sbjct: 201 AIRILGWG-VENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 253
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 128 bits (321), Expect = 2e-32
Identities = 71/340 (20%), Positives = 116/340 (34%), Gaps = 60/340 (17%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+L+GH + G I S D + +WS G+C + + GHTG V
Sbjct: 6 LKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKC--LRTLVGHTGGVWS 62
Query: 411 LKFSTD--------------------------------------GCHIFTCSTDQTLAVW 432
+ + + + S D TL VW
Sbjct: 63 SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122
Query: 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQV 492
D+E GQ + + GH V R + SG+ D VKVWDP + ++
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPETETCLHTLQGHTNR 179
Query: 493 TSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMD 552
D V++G +D I++WD+ T + + L GH + + + ++S D
Sbjct: 180 VYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS--GMELKDNILVSGNAD 236
Query: 553 NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612
+TV+IWDI+ + + +V S D V +WD T
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAV-------TCLQFNKNFVITSSDDGTVKLWDLKT 289
Query: 613 RRIAYKLP-----GHNGSVNDVQFHPKEPIIMSASSDKTI 647
L G G V ++ + + S + T
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 119 bits (297), Expect = 3e-29
Identities = 74/373 (19%), Positives = 128/373 (34%), Gaps = 49/373 (13%)
Query: 1069 LDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT 1128
K L GH V++ + + I +GS D T+KVW G C ++L+ H V
Sbjct: 3 RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 1129 GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIA 1188
+T + +V + + M +
Sbjct: 62 SSQMRDNIIISGSTDRTLKVWNAE----------TGECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 1189 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1248
+GS D T++VW ++ G C L+ H +V + + D VK WD +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETC 169
Query: 1249 IVTLHFNPNVYLPLQI---QVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
+ TL + N LQ VV+G D S+++W +E + S
Sbjct: 170 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-------- 221
Query: 1306 LHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPV-LSLDM 1364
+ +L D+TVKI+ + T + +L G +
Sbjct: 222 ---------------GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 266
Query: 1365 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA-----HEDSVTGVTFVPKTHYFFTTSKD 1419
++ + T S D TVK+W L G+ ++L+ V + S++
Sbjct: 267 QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326
Query: 1420 G----RVKQWDAD 1428
G ++ D D
Sbjct: 327 GTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (280), Expect = 5e-27
Identities = 61/348 (17%), Positives = 119/348 (34%), Gaps = 23/348 (6%)
Query: 911 WNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQEL 970
W R L + + + C ++ G+ D L + G+ L + H+ +
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 971 WSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLS 1030
WS M + G+ L+ E+ L
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 1031 LLHTRTLKLEEQVL-----CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPV 1085
+ T + ++ V D + + D VK++ +T +L GH V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180
Query: 1086 LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD 1145
+ +D + +GS D +++VW ++ G+C +L H+ +G+ + + + D
Sbjct: 181 --YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNAD 236
Query: 1146 GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1205
VK WD + + TL + ++ + T S D TVK+W L G+
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTC-----LQFNKNFVITSSDDGTVKLWDLKTGE 291
Query: 1206 CHKSLLA-----HEDSVTGVTFVPKTHYFFTTSKDG----RVKQWDAD 1244
++L+ V + S++G ++ D D
Sbjct: 292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (254), Expect = 1e-23
Identities = 68/299 (22%), Positives = 117/299 (39%), Gaps = 53/299 (17%)
Query: 389 WSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHST 448
W GE ++ V+ GH V+ G I + S D TL VW G+ ++ + GH+
Sbjct: 1 WRR-GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 449 FVNSCD-------------------------------------PVRRGQLLIASGSDDCT 471
V S + + + SGS D T
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118
Query: 472 VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS 531
++VWD + + V++G D +K+WD T + + L+GH+
Sbjct: 119 LRVWDIETGQCLHVLMG-HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 532 DTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV 591
+ V SL DG +++S ++D ++R+WD+ C+ ++GHQ +
Sbjct: 178 NRVY--SLQFDGIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLT------SGMEL 225
Query: 592 SGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIYL 649
+ +G+AD V IWD T + L G N + V ++++S D T+ L
Sbjct: 226 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 284
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.8 bits (239), Expect = 1e-21
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 17/210 (8%)
Query: 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHI 420
G DG+ + S YD + +W + + GHT V L+F DG H+
Sbjct: 134 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYSLQF--DGIHV 190
Query: 421 FTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK 480
+ S D ++ VWD+E G I + GH + + + ++ SG+ D TVK+WD +
Sbjct: 191 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTG 247
Query: 481 NQAVSMNNTYQVTSVAFNDTAEC--VLTGGIDNDIKMWDLRTNSVVQKLR-----GHSDT 533
++ + S V+T D +K+WDL+T ++ L G
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 534 VTGLSLSPDGSYILSNAMDNT----VRIWD 559
V + S + + T + + D
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.7 bits (236), Expect = 3e-21
Identities = 61/305 (20%), Positives = 115/305 (37%), Gaps = 28/305 (9%)
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1210
W + L GH V++ + + I +GS D T+KVW G C ++L
Sbjct: 1 WRRGELKSPKVLK------GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL 53
Query: 1211 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNP-NVYLPLQIQVVTG 1269
+ H V +T + +V + + H + + +VV+G
Sbjct: 54 VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 113
Query: 1270 GGDKSVKLWQLELVSVNREADEETKDVSRSHK----VLSLLHTRTLKLEEQVLCARV--- 1322
D ++++W +E V V+S + +K+ + +
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173
Query: 1323 ----------SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIA 1372
D + LDT+++++ ++T +L GH+ + ++
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNILV 231
Query: 1373 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFE 1431
+G+ D TVK+W + G C ++L + VT + ++ T+S DG VK WD E
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 291
Query: 1432 RIVTL 1436
I L
Sbjct: 292 FIRNL 296
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (216), Expect = 9e-19
Identities = 61/387 (15%), Positives = 114/387 (29%), Gaps = 64/387 (16%)
Query: 103 SLDTTDVISTFTGHKSAI-TVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGV 161
GH + T +Q+ G+R+ +GS D + +W V L L GH G
Sbjct: 2 RRGELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 162 ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISG 221
+ + T + + + C+ + ++SG
Sbjct: 60 VWSSQMRDNIIISG------STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 113
Query: 222 SNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLL---LSEDEPDLTVSKIEVQIINELKNL 278
S DA L+VW++ + + + Q + D V + + L L
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173
Query: 279 STGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKV 338
+ + + + S +L DT+ + V+D E +
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSL---------DTS--------------IRVWDVETGNCI 210
Query: 339 QKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENI 398
+ G + S + S D + IW +
Sbjct: 211 HTL-------------------TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251
Query: 399 GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK-----GHSTFVNSC 453
+ + + + T S D T+ +WDL+ G+ I+ + G V
Sbjct: 252 TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 311
Query: 454 DPVRRGQLLIASGSDDCT----VKVWD 476
+ A GS + T + V D
Sbjct: 312 RASNTKLVC-AVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (161), Expect = 1e-11
Identities = 51/402 (12%), Positives = 108/402 (26%), Gaps = 70/402 (17%)
Query: 516 WDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG 575
W + L+GH D V L G+ I+S + DNT+++W +C++ + G
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG----KCLRTLVG 55
Query: 576 HQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKE 635
H WS S + + + H E
Sbjct: 56 HTGG--------VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 107
Query: 636 PIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFY 695
++S S D T+ + + + +L V + + + D +V ++
Sbjct: 108 KRVVSGSRDATLRVWDI--ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVW- 162
Query: 696 FCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHG 755
L L+ L D + S + + I G
Sbjct: 163 -------DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG 215
Query: 756 NDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPE 815
+ ++ S ++ K + + +
Sbjct: 216 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK----- 270
Query: 816 LVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRH 875
+ T+S G +K D+ G + +R+
Sbjct: 271 --------NFVITSSDDGTVKLWDLKTG---------------------------EFIRN 295
Query: 876 LRSIHAQGHHSEVRALAFSSDNLALVSACAS-----QVKIWN 912
L ++ + G V + S+ L + ++ + +
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 2e-09
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 1/114 (0%)
Query: 1343 LDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT 1402
K L GH V++ + + I +GS D T+KVW G C ++L+ H V
Sbjct: 3 RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 1403 GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNSVHLNSCP 1456
+T + +V + + H + ++
Sbjct: 62 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 6e-08
Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 25/247 (10%)
Query: 1199 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNV 1258
W K L H+D V + + S D +K W A + + TL
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV----- 54
Query: 1259 YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1318
G V W ++ + + + + V
Sbjct: 55 -----------GHTGGV--WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR 101
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDR 1378
C + + D T++++ ++T + L GH V + YD + +G+ D
Sbjct: 102 CMHLHEKRVVSGSR--DATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDF 157
Query: 1379 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHI 1438
VKVW + C +L H + V + F + + S D ++ WD + I TL
Sbjct: 158 MVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTG 215
Query: 1439 CSCSLNS 1445
+
Sbjct: 216 HQSLTSG 222
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 3e-05
Identities = 50/356 (14%), Positives = 97/356 (27%), Gaps = 29/356 (8%)
Query: 608 WDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGK 667
W + L GH+ V I+S S D T+ + K L
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWS--AVTGKCLRTLVGHT 57
Query: 668 GRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDK 727
G V + + I V + +R + EK D
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 728 AGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEK 787
+ G+ ++ + C + V D
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV---VSGAYDFMVKVWDPETETCLHT-- 172
Query: 788 KLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGE 847
LQ V G V V+ I T + + S +
Sbjct: 173 -LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--- 228
Query: 848 IRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQ 907
L ++++++ + + + L+++ H + N + S+
Sbjct: 229 -ILVSGNADSTVKIWDI------KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 281
Query: 908 VKIWNRPSLSCLRTIDT------GSYALSVCFVPGDRHVLVGTKDG----RLLIVD 953
VK+W+ + +R + T G + VG+++G +LL++D
Sbjct: 282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 7e-04
Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 19/140 (13%)
Query: 16 FNIIASPNCNVVFVTLKNQEGRFLATGASEDVI-IWDLRLAEKALLLPGEKHEALLLPGE 74
N I + + + + L +G ++ + IWD++ + L
Sbjct: 207 GNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK---------TGQCLQTLQGPN 257
Query: 75 KHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFT-----GHKSAITVIQYDPLG 129
KH+ + + + + +G++K + L T + I G + I+
Sbjct: 258 KHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 317
Query: 130 HRLATGSKD----TDIVLWD 145
A GS++ T +++ D
Sbjct: 318 LVCAVGSRNGTEETKLLVLD 337
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (286), Expect = 3e-28
Identities = 61/307 (19%), Positives = 105/307 (34%), Gaps = 35/307 (11%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMDLKF 413
I ++C D Q I S D I IW EC +++GHTG+V+ L++
Sbjct: 8 IHCRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLEC--KRILTGHTGSVLCLQY 63
Query: 414 STDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVK 473
+ + + + + + + S D ++
Sbjct: 64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT-----CSKDRSIA 118
Query: 474 VWDPRKKNQAVSMNNTYQVTSVAFNDTAECVL--TGGIDNDIKMWDLRTNSVVQKLRGHS 531
VWD + + + D IK+W+ T V+ L GH
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178
Query: 532 DTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV 591
+ L ++S + DNT+R+WDI C++V+ GH+
Sbjct: 179 RGIA--CLQYRDRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELV------RCIRF 226
Query: 592 SGLYVTAGSADKCVYIWDTTT---------RRIAYKLPGHNGSVNDVQFHPKEPIIMSAS 642
+ +G+ D + +WD L H+G V +QF I+S+S
Sbjct: 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSS 284
Query: 643 SDKTIYL 649
D TI +
Sbjct: 285 HDDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.2 bits (240), Expect = 4e-22
Identities = 47/259 (18%), Positives = 89/259 (34%), Gaps = 15/259 (5%)
Query: 310 DTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSK 369
D R + V ++ + R ++ ML
Sbjct: 41 DKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH 100
Query: 370 YHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTL 429
+ + + DR I +W + + D +I + S D+T+
Sbjct: 101 LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI 160
Query: 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT 489
VW+ + ++ + GH + L+ SGS D T+++WD + +
Sbjct: 161 KVWNTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIE-CGACLRVLEG 216
Query: 490 YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTN---------SVVQKLRGHSDTVTGLSLS 540
++ + +++G D IK+WDL ++ L HS V L
Sbjct: 217 HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF--RLQ 274
Query: 541 PDGSYILSNAMDNTVRIWD 559
D I+S++ D+T+ IWD
Sbjct: 275 FDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.1 bits (224), Expect = 4e-20
Identities = 51/308 (16%), Positives = 95/308 (30%), Gaps = 32/308 (10%)
Query: 1080 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF 1139
V L YD I +G D T+K+W + +C + L H SV + + +
Sbjct: 13 ETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV--- 67
Query: 1140 FTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
+ + L + +++ ++ T S DR++ VW
Sbjct: 68 -------IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120
Query: 1200 GLDYGDC-HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNP-- 1256
+ + Y + S D +K W+ E + TL+ +
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180
Query: 1257 -NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1315
VV+G D +++LW +E + R + + V + +
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS------- 233
Query: 1316 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS 1375
+ V L + +L H V L +D I + S
Sbjct: 234 -------GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--QFDEFQIVSSS 284
Query: 1376 GDRTVKVW 1383
D T+ +W
Sbjct: 285 HDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.6 bits (202), Expect = 3e-17
Identities = 49/287 (17%), Positives = 99/287 (34%), Gaps = 36/287 (12%)
Query: 1170 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTF-VPKTHY 1228
V L YD I +G D T+K+W + +C + L H SV + +
Sbjct: 13 ETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70
Query: 1229 FFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVS---- 1284
+ S + ++ +VT D+S+ +W + +
Sbjct: 71 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130
Query: 1285 -----------VNREADEETKDVSRSHKVLSLLHTRTLKL-----EEQVLCARVSPDSKL 1328
+ D++ + + + + +T T + + A + +L
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL 190
Query: 1329 LAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1388
+ D T++++ ++ L GH L + +D+ I +G+ D +KVW L
Sbjct: 191 VVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248
Query: 1389 D---------CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
C ++L+ H V + F ++S D + WD
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.3 bits (196), Expect = 2e-16
Identities = 51/279 (18%), Positives = 100/279 (35%), Gaps = 17/279 (6%)
Query: 932 CFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQ 991
C D+ ++ G +D + I D E + H+ + +
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79
Query: 992 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL--------LHTRTLKLEEQV 1043
G+ L ++ + + +++ + R + + +
Sbjct: 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 139
Query: 1044 LCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1103
V D K + + D T+K++ T +F +L GHK + + Y L+ +GS D
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSD 197
Query: 1104 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1163
T+++W ++ G C + L HE+ V + + DG++K WD
Sbjct: 198 NTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 1164 FFI---SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
+ +L H V L +D I + S D T+ +W
Sbjct: 256 GTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.7 bits (179), Expect = 3e-14
Identities = 53/310 (17%), Positives = 98/310 (31%), Gaps = 48/310 (15%)
Query: 960 LEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEET 1019
L+ I S+ V L Q++ ++V+G D ++K+W + R T
Sbjct: 5 LQRIHCRSETSKGVYCL--QYDDQ-------KIVSGLRDNTIKIWDKNTLECKRILTGHT 55
Query: 1020 KDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY 1079
V ++ T + +V L F
Sbjct: 56 GSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR 115
Query: 1080 GHKL------------------PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1121
+ + +D I + SGDRT+KVW + ++L
Sbjct: 116 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 175
Query: 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMS 1181
H+ + + + + S D ++ WD + + L L +
Sbjct: 176 GHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--------IR 225
Query: 1182 YDSTLIATGSGDRTVKVWGLDYGD---------CHKSLLAHEDSVTGVTFVPKTHYFFTT 1232
+D+ I +G+ D +KVW L C ++L+ H V + F ++
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSS 283
Query: 1233 SKDGRVKQWD 1242
S D + WD
Sbjct: 284 SHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (168), Expect = 8e-13
Identities = 52/332 (15%), Positives = 106/332 (31%), Gaps = 54/332 (16%)
Query: 110 ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS 169
I + + +QYD ++ +G +D I +WD L+GH G + +++
Sbjct: 8 IHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKV 229
+ + + D + + + +++ S D + V
Sbjct: 66 RVIITG------SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119
Query: 230 WNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVF 289
W++ +DI V ++ +S + ++V+
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVN----------------VVDFDDKYIVSASGDRTIKVW 163
Query: 290 RLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTS 349
+ C TLN ++ S N + ++D E ++ +
Sbjct: 164 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDN-TIRLWDIECGACLRVL-------- 214
Query: 350 NLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECEN--------IGVM 401
G E D + I S YD +I +W + + + +
Sbjct: 215 -----------EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 263
Query: 402 SGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433
H+G V L+F D I + S D T+ +WD
Sbjct: 264 VEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.0 bits (164), Expect = 2e-12
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 76 HEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATG 135
H + D + A + ++K ++ T + + T GHK I +QY + +G
Sbjct: 137 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSG 194
Query: 136 SKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD- 194
S D I LWD+ L L GH+ ++ + + +VS A D +K+WD
Sbjct: 195 SSDNTIRLWDIECGACLRVLEGHE----ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 250
Query: 195 --------CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
C +T+ H V+ + ++ ++S S+D + +W+
Sbjct: 251 PRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 9e-06
Identities = 28/204 (13%), Positives = 63/204 (30%), Gaps = 30/204 (14%)
Query: 908 VKIWNRPSLSCLRTIDTGSY--ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPA 965
+ +W+ S + + A D++++ + D + + + E + +
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176
Query: 966 HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRS 1025
H + + + VV+G D +++LW +E + R + + V
Sbjct: 177 HKRGIACLQYRDRL------------VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 224
Query: 1026 HKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPV 1085
+ + + V L + +L H V
Sbjct: 225 RFDNKRIVS--------------GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270
Query: 1086 LSLDMSYDSTLIATGSGDRTVKVW 1109
L +D I + S D T+ +W
Sbjct: 271 FRL--QFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 2e-05
Identities = 31/196 (15%), Positives = 72/196 (36%), Gaps = 41/196 (20%)
Query: 85 HDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPL---------------- 128
+D ++ + ++K + +T + TGH ++ +QYD
Sbjct: 23 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDV 82
Query: 129 ----------------------GHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIR 166
+ T SKD I +WD+ + +
Sbjct: 83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL-RRVLVGHRAAV 141
Query: 167 FMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAE 226
+ ++VS++ D +K+W+ T + +T+ H + C+ D ++SGS+D
Sbjct: 142 NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNT 199
Query: 227 LKVWNVRDRSDIDTED 242
+++W++ + + +
Sbjct: 200 IRLWDIECGACLRVLE 215
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 5e-05
Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 23/132 (17%)
Query: 882 QGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH + L + + + + +++W+ +CLR ++ G L C ++ ++
Sbjct: 175 NGHKRGIACLQYRDRLVV-SGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFDNKRIV 232
Query: 942 VGTKDGRLLIVDIGAGE---------ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQV 992
G DG++ + D+ A L + HS ++ + F+ Q+
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-----FDEF-------QI 280
Query: 993 VTGGGDKSVKLW 1004
V+ D ++ +W
Sbjct: 281 VSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 0.002
Identities = 36/247 (14%), Positives = 82/247 (33%), Gaps = 26/247 (10%)
Query: 1208 KSLLAHEDSVTGVT-FVPKTHYFFTTSKDGRVKQWDADNFE--RIVTLHFNPNVYLPLQI 1264
+ + ++ GV + +D +K WD + E RI+T H +
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL------ 59
Query: 1265 QVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP 1324
++ + +++ + ++ DV+ + +L+H L + +
Sbjct: 60 ---------CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT 110
Query: 1325 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1384
SK ++++ D + +D I + SGDRT+KVW
Sbjct: 111 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVN------VVDFDDKYIVSASGDRTIKVWN 164
Query: 1385 LDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLN 1444
+ ++L H+ + + + + S D ++ WD + + L +
Sbjct: 165 TSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 222
Query: 1445 SPMNSVH 1451
Sbjct: 223 CIRFDNK 229
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 109 bits (271), Expect = 1e-25
Identities = 51/357 (14%), Positives = 98/357 (27%), Gaps = 10/357 (2%)
Query: 1084 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK--SLLAHEDSVTGVTFVPKTHYFFT 1141
P+ + D T IA + V ++ + L H VTGV + P ++ T
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 1142 TSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201
D W TL + + + + +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 1202 DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLP 1261
D+ C +V + + P + S D + + + A E P
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 1262 LQIQVVTGGGDKSVKLWQLELVSVNREA--DEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1319
+++ + + + V + + +L
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 1320 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1379
+S L+A D +F D+ +S G + + D+
Sbjct: 249 VTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 1380 VKVWGLDYGDCHKSLLAHEDSVTGVTFVP----KTHYFFTTSKDGRVKQWDADNFER 1432
G H++SV+ ++ + K F TT DG + WD + E
Sbjct: 308 ASSEGSAAAGA-GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 96.5 bits (238), Expect = 2e-21
Identities = 66/378 (17%), Positives = 105/378 (27%), Gaps = 54/378 (14%)
Query: 1039 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF--FISLYGHKLPVLSLDMSYDSTL 1096
L E + C + D +A+ + V I+ K+ L H V +D + DS
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 1097 IATGSGDRTVKVW--GLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1154
I T DR VW +L + V + P F S + +
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 1155 NFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD--------- 1205
+ VLSLD +S L+A GS D +++ +
Sbjct: 126 QENDWWVCKHIK--KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183
Query: 1206 ---------CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNP 1256
+ V GV F S D V DAD + TL
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243
Query: 1257 NVYLPLQI----QVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK 1312
L + +V G D L+ D + +
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVLFTY--------------DSAAGKLSFGGRLDVPKQ 289
Query: 1313 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDS---- 1368
++ L AR + S + LD+ HK V + +
Sbjct: 290 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDS--------LHKNSVSQISVLSGGKAKC 341
Query: 1369 TLIATGSGDRTVKVWGLD 1386
+ T D + +W +
Sbjct: 342 SQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 96.1 bits (237), Expect = 3e-21
Identities = 50/354 (14%), Positives = 105/354 (29%), Gaps = 37/354 (10%)
Query: 365 IFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMDLKFSTDGCHIFTC 423
I C ++ D IA + ++ I+ + + + H G V + ++ D I TC
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 424 STDQTLAVWDLEKGQRIKKMKGHSTF-VNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ 482
TD+ VW L+ + C + A GS + + ++N
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 483 AVSMNNTYQ-----VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK----------- 526
+ + V S+ ++ + + G D +++ V ++
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189
Query: 527 -------LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579
V G+ S +GS + + D+TV + D +
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA- 248
Query: 580 FEKNLLRCAWSVSGLYVTAGSADK-CVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPII 638
+ V AG ++ +D+ ++ G
Sbjct: 249 -------VTFITESSLVAAGHDCFPVLFTYDSAAGKL--SFGGRLDVPKQSSQRGLTARE 299
Query: 639 MSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHR-QILCCHGNDNVV 691
+ DK S S+ ++ ++ + K + C G D +
Sbjct: 300 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 353
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 88.4 bits (217), Expect = 1e-18
Identities = 36/375 (9%), Positives = 104/375 (27%), Gaps = 23/375 (6%)
Query: 162 ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD--CFKTMAAHLTEVWGVCVMREDSYLI 219
I+ + + + V I++ + H +V GV + + ++
Sbjct: 10 ISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
Query: 220 SGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLS 279
+ D VW ++ R+ T +++ + + + + +
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV--RWAPNEKKFAVGSGSRVISICYFE 125
Query: 280 TGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYD-REKNYKV 338
W+ S++ + + + ++ K +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNS--------VLLAAGSCDFKCRIFSAYIKEVEE 177
Query: 339 QKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENI 398
+ G + G + + +G +A +D + + + +
Sbjct: 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA-DADKKMAV 236
Query: 399 GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR 458
++ T ++ + F T+ + D ++ + G R
Sbjct: 237 ATLASETLPLLAVTFITES-SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS-SQRG 294
Query: 459 GQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAF----NDTAECVLTGGIDNDIK 514
+ D + + V+ ++ T G+D +
Sbjct: 295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354
Query: 515 MWDLRT-NSVVQKLR 528
+WD+R+ S ++ L+
Sbjct: 355 IWDVRSLESALKDLK 369
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 88.0 bits (216), Expect = 2e-18
Identities = 42/329 (12%), Positives = 96/329 (29%), Gaps = 37/329 (11%)
Query: 348 TSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTG 406
+ N + + L+ H G++ + PD I + G DR ++W++ G + V+
Sbjct: 37 SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 96
Query: 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVN---SCDPVRRGQLLI 463
A ++++ + S + +++ E+ K + +L+
Sbjct: 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156
Query: 464 ASGSDDCTVKVWDPRKKNQAVSMNNTYQ-------------------VTSVAFNDTAECV 504
A+GS D +++ K T V V F+ V
Sbjct: 157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216
Query: 505 LTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV 564
D+ + + D V L + + ++ + S + + D ++
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDS-- 273
Query: 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNG 624
G ++ + + DK + H
Sbjct: 274 --AAGKLSFGGRLDVPKQ----SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKN 326
Query: 625 SVNDVQFHP----KEPIIMSASSDKTIYL 649
SV+ + K + D + +
Sbjct: 327 SVSQISVLSGGKAKCSQFCTTGMDGGMSI 355
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 84.5 bits (207), Expect = 2e-17
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 23/373 (6%)
Query: 111 STFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG--LHRLSGHKGVITDIRFM 168
+ + I+ ++ ++A + ++ +++ +H L H G +T + +
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 169 SQPGHHFVVSSAKDTFVKIWDADTGD--CFKTMAAHLTEVWGVCVMREDSYLISGSNDAE 226
P + +V+ D +W + V + GS
Sbjct: 61 --PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 118
Query: 227 LKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWL 286
+ + +D K + L L + ++ + + + +
Sbjct: 119 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178
Query: 287 QVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVG 346
+ + + + + + V+ K
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 238
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTG 406
S + + + +A +G+D +++ + G
Sbjct: 239 LAS-----------ETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKL-SFGGRLD 285
Query: 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ---LLI 463
+ D+ + H V+ + G+
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQF 344
Query: 464 ASGSDDCTVKVWD 476
+ D + +WD
Sbjct: 345 CTTGMDGGMSIWD 357
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.0 bits (203), Expect = 6e-17
Identities = 34/265 (12%), Positives = 76/265 (28%), Gaps = 20/265 (7%)
Query: 402 SGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ--RIKKMKGHSTFVNSCDPVRRG 459
S + ++ D I C + + +++ + ++ ++K H+ V D
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 460 QLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLT---GGIDNDIKMW 516
+ + D VW + + ++ + A G I +
Sbjct: 64 NRI-VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122
Query: 517 DLRTNS----VVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+ + TV L P+ + + + D RI+ ER
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182
Query: 573 MSGHQ----------HNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGH 622
G + + + +S +G V S D V + D + L
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242
Query: 623 NGSVNDVQFHPKEPIIMSASSDKTI 647
+ V F + ++ + +
Sbjct: 243 TLPLLAVTFITESSLVAAGHDCFPV 267
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.7 bits (197), Expect = 4e-16
Identities = 49/378 (12%), Positives = 103/378 (27%), Gaps = 29/378 (7%)
Query: 882 QGHHSEVRALAFSSDNLALVSACAS-QVKIWNRPS--LSCLRTIDTGSYA-LSVCFVPGD 937
+ A++ D + + +V I+ + + + + V + P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 938 RHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG 997
++ D + + + + + P + + G G
Sbjct: 64 NRIVTCGTDRNAYVWT--------LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG 115
Query: 998 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC---ARVSPDSKL 1054
+ + + E N + VLSL L C R+
Sbjct: 116 SRVISICYFE--QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173
Query: 1055 LAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1114
T + + V + S + + +A S D TV + D
Sbjct: 174 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 233
Query: 1115 DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP 1174
+L + + VTF+ ++ D + D+ ++ G
Sbjct: 234 MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFG------GRLDV 286
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP----KTHYFF 1230
+ + D+ G H++SV+ ++ + K F
Sbjct: 287 PKQSSQRGLTARERFQNLDKKASSEGSAAAGA-GLDSLHKNSVSQISVLSGGKAKCSQFC 345
Query: 1231 TTSKDGRVKQWDADNFER 1248
TT DG + WD + E
Sbjct: 346 TTGMDGGMSIWDVRSLES 363
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 78.0 bits (190), Expect = 2e-15
Identities = 41/378 (10%), Positives = 101/378 (26%), Gaps = 29/378 (7%)
Query: 78 VCQLSPNHDSSQLAVAYTNGSLKTFSLDTTD--VISTFTGHKSAITVIQYDPLGHRLATG 135
+ + N D +Q+A+ N + + + H +T + + P +R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 136 SKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD- 194
D + +W + L + P + + I + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 195 ---CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLN 251
C + V + L +GS D + +++ ++ ++
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF------SAYIKEVEERPAPTP 183
Query: 252 QLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDT 311
+ S ++ + + G + +C++ + +T
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243
Query: 312 TQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYH 371
L + + +D + G S
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAG----------KLSFGGRLDVPKQSSQR 293
Query: 372 PDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG----CHIFTCSTDQ 427
D++ G+ S H +V + + G T D
Sbjct: 294 GLTARERFQNLDKKASSEGSAA--AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG 351
Query: 428 TLAVWDLEKGQR-IKKMK 444
+++WD+ + +K +K
Sbjct: 352 GMSIWDVRSLESALKDLK 369
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.7 bits (166), Expect = 3e-12
Identities = 46/381 (12%), Positives = 115/381 (30%), Gaps = 48/381 (12%)
Query: 202 HLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPD 261
+ + ++ + + N+ E+ ++ + + + + Q+ + + D
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 262 LTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMK 321
+ ++ G + V+ L TL I +
Sbjct: 66 I---------------VTCGTDRNAYVWTLKGRTWKPTLVILRI----------NRAARC 100
Query: 322 RKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG 381
+ + + ++ + + + + +HP+ +A+
Sbjct: 101 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160
Query: 382 YDRQIFIWSVYGE-----------------CENIGVMSGHTGAVMDLKFSTDGCHIFTCS 424
D + I+S Y + E + S G V + FS +G + S
Sbjct: 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220
Query: 425 TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV 484
D T+ + D +K + + + + + + L +A+G D C ++ +
Sbjct: 221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSL-VAAGHD-CFPVLFTYDSAAGKL 278
Query: 485 SMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGS 544
S V + + + + H ++V+ +S+ G
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK 338
Query: 545 Y----ILSNAMDNTVRIWDIR 561
+ MD + IWD+R
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.3 bits (165), Expect = 3e-12
Identities = 42/360 (11%), Positives = 101/360 (28%), Gaps = 20/360 (5%)
Query: 578 HNFEKNLLRC-AWSVSGLYVTAGSADKCVYIWDTTTRRIA--YKLPGHNGSVNDVQFHPK 634
H+F + C AW+ + + V+I++ + + ++L HNG V V + P
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 635 EPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLF 694
I++ +D+ Y+ K ++ + + + V+ +
Sbjct: 63 SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122
Query: 695 YFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCH 754
YF +++ + + + + K R+ + + +
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182
Query: 755 GNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKP 814
+ + + SS + + V D
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242
Query: 815 ELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVR 874
L + T + G + +L+ + + S + + +
Sbjct: 243 TLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302
Query: 875 HL------------RSIHAQGHHSEVRALAFSSDNLALVSACAS-----QVKIWNRPSLS 917
+L + H + V ++ S A S + + IW+ SL
Sbjct: 303 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.4 bits (160), Expect = 1e-11
Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%)
Query: 1313 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF--FISLYGHKLPVLSLDMSYDSTL 1370
L E + C + D +A+ + V I+ K+ L H V +D + DS
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 1371 IATGSGDRTVKVW--GLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428
I T DR VW +L + V + P F S + +
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 1429 NFERIVTLHICSCSLNSPMNSVHLNSCPAL 1458
+ S + S+ + L
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVL 155
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 9e-06
Identities = 20/168 (11%), Positives = 45/168 (26%), Gaps = 8/168 (4%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
V + + + S++A + ++ D ++T + + +
Sbjct: 197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS 256
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDA 190
+A G VL+ + G G V + D +
Sbjct: 257 LVAAGHDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL--DKKASSEGS 313
Query: 191 DTGDCFKTMAAHLTEVWGVCVMREDSY----LISGSNDAELKVWNVRD 234
+ H V + V+ + D + +W+VR
Sbjct: 314 AAAGA-GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.2 bits (97), Expect = 6e-04
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 15/116 (12%)
Query: 35 EGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAY 94
E +A G +++ A L G + +V + S +
Sbjct: 254 ESSLVAAGHDCFPVLFTYDSAAGKLSFGG-----------RLDVPKQSSQRGLTARERFQ 302
Query: 95 TNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG----HRLATGSKDTDIVLWDV 146
+ + HK++++ I G + T D + +WDV
Sbjct: 303 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (267), Expect = 2e-25
Identities = 35/295 (11%), Positives = 76/295 (25%), Gaps = 16/295 (5%)
Query: 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV----MSGHTGAVMDLKFST 415
HG + +++ + G + +W + V + K
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 416 DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVW 475
DGC + TL++WDL K + S+ +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 476 DPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDND-IKMWDLRTNSVVQKLRGHSDTV 534
V + + + + + D + + +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227
Query: 535 TGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594
L P G ++ + V + + H E +L ++ G
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKP---------DKYQLHLHESCVLSLKFAYCGK 278
Query: 595 YVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
+ + D + W T ++ + SV + I++ S DK +
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.7 bits (244), Expect = 2e-22
Identities = 54/353 (15%), Positives = 96/353 (27%), Gaps = 20/353 (5%)
Query: 1074 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1133
+F G K P S ++ D + + G+ + L H + V VT
Sbjct: 2 YFQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTIS 60
Query: 1134 PKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1193
T + +T G VK WD + + + S + D + G
Sbjct: 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL-DCLNRDNYIRSCKLLPDGCTLIVGGEA 118
Query: 1194 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1253
T+ +W L + S D + +
Sbjct: 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178
Query: 1254 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1313
F + I S +L ++ R +
Sbjct: 179 FQGHTDGASCID-------ISNDGTKLWTGGLDNTVRSWDLREGRQL--------QQHDF 223
Query: 1314 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIAT 1373
Q+ P + LAV + + V++ ++ + + H+ VLSL +Y +
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVS 282
Query: 1374 GSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
D + W YG SV Y T S D + ++
Sbjct: 283 TGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.0 bits (237), Expect = 2e-21
Identities = 51/347 (14%), Positives = 99/347 (28%), Gaps = 31/347 (8%)
Query: 1047 RVSPDSKLLAVSL-LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1105
V+ D ++ V D + + +L H V ++ +S + + TG
Sbjct: 16 HVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGC 73
Query: 1106 VKVWGLDYGDCHKSLL-----AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
VKVW + + + ++ + +P + + WD +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGV 1220
S +S D + + G+ H D + +
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG----HTDGASCI 189
Query: 1221 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQL 1280
+T D V+ WD ++ F ++ + + + +
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF-----SLGYCPTGEWLAVGME 244
Query: 1281 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKI 1340
++ K H E VL + + K + D +
Sbjct: 245 SSNVEVLHVNKPDKYQLHLH-------------ESCVLSLKFAYCGKWFVSTGKDNLLNA 291
Query: 1341 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1387
+ I VLS D+S D I TGSGD+ V+ + Y
Sbjct: 292 WRTPYGAS-IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.6 bits (223), Expect = 1e-19
Identities = 46/252 (18%), Positives = 80/252 (31%), Gaps = 10/252 (3%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
I K PDG + G + IW + I + +
Sbjct: 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ Q + + T SC + + +G D TV+ WD
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 478 RKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGL 537
R+ Q + T Q+ S+ + T E + G +++++ + Q H V L
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSL 271
Query: 538 SLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVT 597
+ G + +S DN + W S ++L C SV Y+
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTP-----YGASIFQSKESS----SVLSCDISVDDKYIV 322
Query: 598 AGSADKCVYIWD 609
GS DK +++
Sbjct: 323 TGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.3 bits (222), Expect = 2e-19
Identities = 48/297 (16%), Positives = 93/297 (31%), Gaps = 20/297 (6%)
Query: 874 RHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWN------RPSLSCLRTIDTGSY 927
RH R I+ H V A+ S+ + + VK+W+ + +S L ++ +Y
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNY 99
Query: 928 ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLP 987
S +P ++VG + L I D+ A S A+ + +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 988 LQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL------------LHTR 1035
+ + L + + + + + L +
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Query: 1036 TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST 1095
Q+ P + LAV + + V++ ++ + + H+ VLSL +Y
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGK 278
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152
+ D + W YG SV Y T S D + ++
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.6 bits (184), Expect = 1e-14
Identities = 58/304 (19%), Positives = 96/304 (31%), Gaps = 28/304 (9%)
Query: 918 CLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILE-----DIPAHSQELWS 972
+ T++ G +V RHV G G + + DI D + S
Sbjct: 44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRS 102
Query: 973 VAMLPD-------------QFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEET 1019
+LPD +I+ + + S +
Sbjct: 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162
Query: 1020 KDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY 1079
+++ L + + C +S D L LD TV+ + L + +
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-H 221
Query: 1080 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF 1139
+ SL +A G V+V ++ D ++ HE V + F +F
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH-LHESCVLSLKFAYCGKWF 280
Query: 1140 FTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
+T KD + W I VLS D+S D I TGSGD+ V+
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-------KESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 1200 GLDY 1203
+ Y
Sbjct: 334 EVIY 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.1 bits (180), Expect = 4e-14
Identities = 50/350 (14%), Positives = 96/350 (27%), Gaps = 32/350 (9%)
Query: 169 SQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELK 228
+ G V D + T+ H V V + ++ +G +K
Sbjct: 18 TADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGGKG-CVK 75
Query: 229 VWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQV 288
VW++ + + + N I K L G
Sbjct: 76 VWDISHPGNKSPVSQLDCLNRDNY-------------------IRSCKLLPDGC------ 110
Query: 289 FRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRT 348
L + + TL+I D A + T S D + +
Sbjct: 111 -TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 349 SNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAV 408
+ + +GH C DG + + G D + W + + T +
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ--QHDFTSQI 227
Query: 409 MDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSD 468
L + G + + V + K ++ H + V S G+ S
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNK-PDKYQLHLHESCVLSLKFAYCGKWF-VSTGK 285
Query: 469 DCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDL 518
D + W + V S + + ++TG D ++++
Sbjct: 286 DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.7 bits (179), Expect = 5e-14
Identities = 39/294 (13%), Positives = 74/294 (25%), Gaps = 48/294 (16%)
Query: 1033 HTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF-----FISLYGHKLPVLS 1087
TL E V +S ++ + VK++ + + + S
Sbjct: 44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRS 102
Query: 1088 LDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1147
+ D + G T+ +W L + S
Sbjct: 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162
Query: 1148 VKQW-------------------------------------DADNFERIVTLHFFISLYG 1170
D + + +
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD 222
Query: 1171 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF 1230
+ SL +A G V+V ++ D ++ HE V + F +F
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH-LHESCVLSLKFAYCGKWFV 281
Query: 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVY----LPLQIQVVTGGGDKSVKLWQL 1280
+T KD + W I + +V +VTG GDK ++++
Sbjct: 282 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (166), Expect = 2e-12
Identities = 44/300 (14%), Positives = 87/300 (29%), Gaps = 29/300 (9%)
Query: 1143 SKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202
D + + +I TL H V ++ +S + + TG VKVW +
Sbjct: 29 PPDALIGPGIPRHARQINTL-------NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS 80
Query: 1203 YGDCHKSLL-----AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN 1257
+ + ++ + +P + + WD + +
Sbjct: 81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS 140
Query: 1258 VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV 1317
+ + S + +++ L + +
Sbjct: 141 AP--------------ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186
Query: 1318 LCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1377
C +S D L LD TV+ + L + + + SL +A G
Sbjct: 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMES 245
Query: 1378 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1437
V+V ++ D ++ HE V + F +F +T KD + W I
Sbjct: 246 SNVEVLHVNKPDKYQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 304
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 1e-09
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 113 FTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPG 172
S I + Y P G LA G + +++ + V H+ + ++F
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFA--YC 276
Query: 173 HHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232
+ VS+ KD + W G + V + +D Y+++GS D + V+ V
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 1e-09
Identities = 38/244 (15%), Positives = 76/244 (31%), Gaps = 12/244 (4%)
Query: 459 GQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDL 518
GQ+ D + PR Q ++N+ V +V ++ V TGG +K+WD+
Sbjct: 21 GQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79
Query: 519 RTNSVVQKLR-----GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVM 573
+ + + L PDG ++ +T+ IWD+ P +
Sbjct: 80 SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139
Query: 574 SGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHP 633
S A S + +D + +WD + + + GH + +
Sbjct: 140 SAPACYA------LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 634 KEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDL 693
+ + D T+ + S + + + N V+ +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
Query: 694 FYFC 697
Sbjct: 254 NKPD 257
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 3e-09
Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 8/142 (5%)
Query: 1321 RVSPDSKLLAVSL-LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1379
V+ D ++ V D + + +L H V ++ +S + + TG
Sbjct: 16 HVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGC 73
Query: 1380 VKVWGLDYGDCHKSLL-----AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
VKVW + + + ++ + +P + + WD +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 1435 TLHICSCSLNSPMNSVHLNSCP 1456
+ S + ++ +S
Sbjct: 134 KAELTSSAPACYALAISPDSKV 155
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 3e-07
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 873 VRHLRSIHAQGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDTGSYALSV 931
V H S V +L F+ VS + + W P + + S LS
Sbjct: 253 VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 312
Query: 932 CFVPGDRHVLVGTKDGRLLIVDI 954
D++++ G+ D + + ++
Sbjct: 313 DISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (122), Expect = 6e-07
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
Query: 75 KHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLAT 134
+ V L + + L + I S++ + T
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323
Query: 135 GSKDTDIVLWDVV 147
GS D +++V+
Sbjct: 324 GSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 2e-06
Identities = 31/332 (9%), Positives = 77/332 (23%), Gaps = 60/332 (18%)
Query: 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRI-----AYKLPGHNGSVNDVQFHPKEPIIMSA 641
S +V G CV +WD + + + + P ++
Sbjct: 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115
Query: 642 SSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDE 701
T+ + + + + L S + + ++ +D + ++ +
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175
Query: 702 SSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVD 761
+ + + G + + + L H + +
Sbjct: 176 VRQFQGHT-------DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF 228
Query: 762 LFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVK 821
+C E + K + Q+ + E + GK
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK---------- 278
Query: 822 RLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHA 881
+ K + + G SI
Sbjct: 279 ---WFVSTGKDNLLNAWRTPYG---------------------------------ASIFQ 302
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWN 912
S V + S D+ +V+ + ++
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 4e-06
Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 12/128 (9%)
Query: 880 HAQGHHSEVRALAFSS-DNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDR 938
S++ +L + V +S V++ + + S LS+ F +
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278
Query: 939 HVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGD 998
+ KD L G + S + S + D +VTG GD
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK----------YIVTGSGD 327
Query: 999 KSVKLWQL 1006
K ++++
Sbjct: 328 KKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 4e-05
Identities = 38/326 (11%), Positives = 76/326 (23%), Gaps = 49/326 (15%)
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ DG L + + R H V + + + +G
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHV-YTGGKG- 72
Query: 471 TVKVWDPRKKN------QAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVV 524
VKVWD Q +N + S ++ GG + + +WDL +
Sbjct: 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132
Query: 525 QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH------ 578
K S +L+ + + + I +
Sbjct: 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192
Query: 579 -----------------------------NFEKNLLRCAWSVSGLYVTAGSADKCVYIWD 609
+F + + +G ++ G V +
Sbjct: 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252
Query: 610 TTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSG-KG 668
H V ++F +S D + SI +S
Sbjct: 253 VNKPDKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNA----WRTPYGASIFQSKESS 307
Query: 669 RVHTMVNDKHRQILCCHGNDNVVDLF 694
V + + + D ++
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 5e-05
Identities = 15/135 (11%), Positives = 33/135 (24%), Gaps = 6/135 (4%)
Query: 83 PNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIV 142
D V + +L + H + + + TG K +
Sbjct: 17 VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC-VK 75
Query: 143 LWDVVAECGLHRLS-----GHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFK 197
+WD+ +S I + + V A + A T
Sbjct: 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135
Query: 198 TMAAHLTEVWGVCVM 212
+ + + + +
Sbjct: 136 ELTSSAPACYALAIS 150
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 7e-05
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 1348 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1407
+F G K P S ++ D + + G+ + L H + V VT
Sbjct: 2 YFQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTIS 60
Query: 1408 PKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCS 1442
T + +T G VK WD + + C
Sbjct: 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCL 94
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 107 bits (267), Expect = 2e-25
Identities = 38/314 (12%), Positives = 93/314 (29%), Gaps = 22/314 (7%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS--GHTGAVMDLK 412
+ + + I K P + + +D + ++ + +N+ ++ + ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 413 FS-TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT 471
F I+ + + DL + + + + C + G + + S D
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 472 VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI-------DNDIKMWDLRTNSVV 524
++V DPR V + + + T ++ ++ + L
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183
Query: 525 QKLRGHSD----TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF 580
S L + +++D V + K + H
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 581 EKNLLR-------CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHP 633
+S ++ +D + W+ TR+ N + V+
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIAC 302
Query: 634 KEPIIMSASSDKTI 647
+ I+ A+SD T
Sbjct: 303 SDNILCLATSDDTF 316
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.1 bits (211), Expect = 5e-18
Identities = 37/330 (11%), Positives = 86/330 (26%), Gaps = 13/330 (3%)
Query: 1080 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA---HEDSVTGVTFVPKT 1136
K + + + +L+ S D ++ V+ D + LL ++ + F+ T
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
+ G +
Sbjct: 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH--YFFTTSKDGRVKQWDADNFERIVTLHF 1254
D K+L ++ V F T+ + +V+ + E
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188
Query: 1255 NPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314
+ ++ + + ++ D++ D + S + H LK
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248
Query: 1315 EQV---LCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLI 1371
SP K L + D + + L T K + + ++ ++
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNIL 307
Query: 1372 ATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1401
+ D T K +++ + S+
Sbjct: 308 CLATSDDTFKTNAA----IDQTIELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.7 bits (210), Expect = 6e-18
Identities = 34/278 (12%), Positives = 79/278 (28%), Gaps = 30/278 (10%)
Query: 398 IGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK---GHSTFVNSCD 454
+ + + D+K + S D +L V+ + + + + + C+
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 455 PVRRGQLLIASGSDDCTVKVWDPRK--KNQAVSMNNTYQVTSVAFNDTAECVLTGGIDND 512
+ L I G+ + D QA++ N + ++ D
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 513 IKMWDLRTNSVVQKLRGHSDTV------TGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566
I++ D R + ++ ++ + S ++ ++ V+ + + P
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL----PL 179
Query: 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR------------- 613
+ S D V + +
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 614 --RIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
R+ K VN ++F P+ + +A SD I
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.4 bits (204), Expect = 4e-17
Identities = 47/325 (14%), Positives = 90/325 (27%), Gaps = 27/325 (8%)
Query: 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMS 1181
A +D ++ + +P TS DG + + D + V L + +K P+L +
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL---LQSLRYKHPLLCCNFI 65
Query: 1182 YDS-TLIATGSGDRTVKVWGLD-YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1239
++ I G+ + L + S DG ++
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 1240 QWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRS 1299
D N+ V N N + S +L S + +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 1300 HKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT-------------- 1345
+ + A + + + A S +D V + F D
Sbjct: 186 T------IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 1346 -FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGV 1404
+ + PV S++ S + T D + W L K+ + + V
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVV 298
Query: 1405 TFVPKTHYFFTTSKDGRVKQWDADN 1429
+ + D K A +
Sbjct: 299 KIACSDNILCLATSDDTFKTNAAID 323
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.8 bits (200), Expect = 1e-16
Identities = 27/356 (7%), Positives = 84/356 (23%), Gaps = 50/356 (14%)
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWN----RPSLSCLRTIDTGSYALSVCFVPG 936
Q + + L+ + ++ ++ L+++ L F+
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 937 DRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGG 996
+ ++ G +++ + + + + ++
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 997 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1056
++ + + + + +S++
Sbjct: 128 DPRNYGDGV-------------IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174
Query: 1057 VSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD- 1115
L + + A S D V V D
Sbjct: 175 FRLPLCEDD------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228
Query: 1116 --------------CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1161
+ V + F P+ + +T DG + W+ ++I
Sbjct: 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288
Query: 1162 LHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1217
++ V+ + + ++ + D T K +++ + S+
Sbjct: 289 FAK-----FNEDSVVKI--ACSDNILCLATSDDTFKTNAA----IDQTIELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.0 bits (177), Expect = 8e-14
Identities = 33/345 (9%), Positives = 100/345 (28%), Gaps = 17/345 (4%)
Query: 109 VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG---LHRLSGHKGVITDI 165
++ K I+ I+ P L S D + ++ + L + +K +
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 166 RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225
F+ V + + +K+ + D LI+ S D
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122
Query: 226 ELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKW 285
++V + R+ D K L + + + ++ + ++ + +W
Sbjct: 123 LIEVIDPRNYGDGVIAVK--------NLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174
Query: 286 LQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDV 345
++ +I + + + + V + +
Sbjct: 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234
Query: 346 GRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHT 405
+ + ++ P +++ ++G D I W++ + +
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294
Query: 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFV 450
+V+ + + ++D T + ++ +++ +
Sbjct: 295 DSVVK--IACSDNILCLATSDDTFKTN----AAIDQTIELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.5 bits (168), Expect = 1e-12
Identities = 40/361 (11%), Positives = 94/361 (26%), Gaps = 57/361 (15%)
Query: 958 EILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADE 1017
+I++ A + + P+ + ++ D S+ ++
Sbjct: 2 QIVQIEQAPKDYISDIK-----IIPS-----KSLLLITSWDGSLTVY------------- 38
Query: 1018 ETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV--SLLDTTVKIFFLDTFKFF 1075
K + LL +L+ + +LC ++ L ++ +K+ + + F
Sbjct: 39 ---KFDIQAKNVDLLQ--SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ 93
Query: 1076 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1135
+ Y + S D ++V + + +S
Sbjct: 94 ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI 153
Query: 1136 THYFFTTSK------DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIAT 1189
+S+ + +V+ + E L + + A
Sbjct: 154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ--IRDVALLPKEQEGYAC 211
Query: 1190 GSGDRTVKVWGLDYGD---------------CHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
S D V V D + V + F P+ + +T
Sbjct: 212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS 271
Query: 1235 DGRVKQWDADNFERIVTLHFNPNVYL----PLQIQVVTGGGDKSVKLWQLELVSVNREAD 1290
DG + W+ ++I + + D + K ++ A
Sbjct: 272 DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNAS 331
Query: 1291 E 1291
Sbjct: 332 S 332
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.9 bits (156), Expect = 4e-11
Identities = 37/369 (10%), Positives = 87/369 (23%), Gaps = 53/369 (14%)
Query: 195 CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLL 254
+ A + + ++ S L+ S D L V+ + + K + L L
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY--------KFDIQAKNVDLLQSLR 54
Query: 255 LSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQE 314
I + + + ++T N +
Sbjct: 55 YKHPLLCCNFIDNTDLQIY---VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG 111
Query: 315 LRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDG 374
+ + V D K++ + + +
Sbjct: 112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-----------TKVKNKIFTMDTNS 160
Query: 375 QYIASSGYDRQIFIWSVYG---ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431
+ + Q+ + + + I + S D +AV
Sbjct: 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV 220
Query: 432 WDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQ 491
+ F + N Y
Sbjct: 221 EFFDDQGDDYNSSKRFAF---------------------------RCHRLNLKDTNLAYP 253
Query: 492 VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM 551
V S+ F+ + + T G D I W+L+T ++ + + + ++ + +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATS 312
Query: 552 DNTVRIWDI 560
D+T +
Sbjct: 313 DDTFKTNAA 321
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.3 bits (152), Expect = 1e-10
Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 18/146 (12%)
Query: 365 IFCSKYHPDGQYIASSGYDRQIFIWSV--------------YGECENIGVMSGHTGAVMD 410
+ + + A S D ++ + + + V
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM-KGHSTFVNSCDPVRRGQLLIASGSDD 469
++FS ++T +D ++ W+L+ ++IK K + V +L + D
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC--SDNIL-CLATSD 313
Query: 470 CTVKVWDPRKKNQAVSMNNTYQVTSV 495
T K + ++ ++ Y +
Sbjct: 314 DTFKTNAAIDQTIELNASSIYIIFDY 339
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 2e-10
Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 523 VVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEK 582
+VQ + D ++ + + P S +L + D ++ ++ + V ++ ++ +
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD---IQAKNVDLLQSLRY--KH 57
Query: 583 NLLRCAWS-VSGLYVTAGSADKCVYIWDTTT 612
LL C + + L + G+ + D
Sbjct: 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.6 bits (145), Expect = 9e-10
Identities = 31/291 (10%), Positives = 83/291 (28%), Gaps = 14/291 (4%)
Query: 438 QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQ----VT 493
Q ++ + +++ + LL+ S D ++ V+ + + V + + + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLL-ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60
Query: 494 SVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN 553
F D + + G + S + +++ G+ A
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120
Query: 554 TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR 613
I I P G+ + V + + +N + + + G + V +
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 614 RIAYKLPGHNG----SVNDVQFHPKEPIIMSASSDKTIYLGE-SPLHCDKAGSILRSGKG 668
+G + ++ +S D + + D S + +
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240
Query: 669 RVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDES----STRCRKRLRKLKK 715
+ + + Y D + + RK+++ K
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.9 bits (138), Expect = 6e-09
Identities = 41/357 (11%), Positives = 105/357 (29%), Gaps = 29/357 (8%)
Query: 619 LPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKH 678
++D++ P + +++ S D ++ + + V + + ++
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK-----------FDIQAKNVDLLQSLRY 55
Query: 679 RQ-ILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKG 737
+ +LCC+ DN Y + + L +++ + + I R K
Sbjct: 56 KHPLLCCNFIDNTDLQIYVG-----TVQGEILKVDLIGSPSFQALTNNEANLGICRICKY 110
Query: 738 RVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVV 797
++ ++ N D S+ K M
Sbjct: 111 GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNS 170
Query: 798 EENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNN 857
+ E G E + ++ + K + + R+A+ ++
Sbjct: 171 QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-----EGYACSSIDGRVAVEFFDD 225
Query: 858 SLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACAS-QVKIWNRPSL 916
+ ++ S + R V ++ FS + L +A + + WN +
Sbjct: 226 QGDDYNSSKRFAFRCHRLNL--KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283
Query: 917 SCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSV 973
++ + V D + + T D I + I ++ ++ +
Sbjct: 284 KKIKNFAKFNEDSVVKIACSDNILCLATSDD----TFKTNAAIDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 9e-05
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 1396 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNSVHLNS 1454
A +D ++ + +P TS DG + + D + V L + S P+ +
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLLCCNFID 66
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 5e-04
Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 98 SLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSG 157
S K F+ + T + I++ P L T D I W++ + +
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
Query: 158 HKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVW 207
+ ++ + ++++ DTF K A +T+ + + ++
Sbjct: 292 FNEDS--VVKIACSDNILCLATSDDTF-KTNAA----IDQTIELNASSIY 334
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.004
Identities = 29/354 (8%), Positives = 99/354 (27%), Gaps = 35/354 (9%)
Query: 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDT---TDVISTFTGHKSAITVIQYD 126
+ K + + S L + +GSL + D + +K + +
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 127 PLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186
+L + + + I + + G +++++ D ++
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 187 IWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGS------NDAELKVWNVRDRSDIDT 240
+ D +L + + + S N+++++ + + D +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 241 EDK--DKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSI 298
+ + + LL +++ S I+ ++ E + + F ++
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245
Query: 299 TL-NIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIML 357
N+ I+ + + + ++ ++ + K++
Sbjct: 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--------------- 290
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDL 411
E K + + D + + + + ++ +
Sbjct: 291 ---KFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT-----IELNASSIYII 336
|
| >d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Cathepsin F species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (258), Expect = 3e-25
Identities = 50/260 (19%), Positives = 79/260 (30%), Gaps = 76/260 (29%)
Query: 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVW 2234
P +D R K + KV DQG C SCW
Sbjct: 2 PPEWDWRS-----KGAVTKVKDQGMCGSCW------------------------------ 26
Query: 2235 DKAISAASVMSDRICIQSKGQVKPILSPQH-LICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A S + + + + LS Q L C + CMGG + A+
Sbjct: 27 --AFSVTGNVEGQWFLNQGTLLS--LSEQELLDCDKMDK----------ACMGGLPSNAY 72
Query: 2294 MYWINAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKV------------ 2341
N G ++ D ++ M A + S N +K+
Sbjct: 73 SAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISV 132
Query: 2342 -------------IRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG 2388
I H+V ++G+G+ S + P+W NS+ WGE+G
Sbjct: 133 AINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRS-DVPFWAIKNSWGTDWGEKG 191
Query: 2389 LFKIRRGVNMCSIEDSVMAG 2408
+ + RG C + +
Sbjct: 192 YYYLHRGSGACGVNTMASSA 211
|
| >d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin S species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (254), Expect = 1e-24
Identities = 44/258 (17%), Positives = 75/258 (29%), Gaps = 72/258 (27%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P++ D RE K + +V QG+C +CW
Sbjct: 1 LPDSVDWRE-----KGCVTEVKYQGSCGACW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A SA + ++ +++ V + C GG A+
Sbjct: 27 ---AFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG--------NKGCNGGFMTTAF 75
Query: 2294 MYWIN-AGLVDGGDYGTHDVSMGR------------------------YIEGIGHAASVM 2328
Y I+ G+ Y + E + + V
Sbjct: 76 QYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVS 135
Query: 2329 GSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG 2388
+ +F E S H V ++G+G + YWL NS+ +GE+G
Sbjct: 136 VGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEG 194
Query: 2389 LFKIRRGV-NMCSIEDSV 2405
++ R N C I
Sbjct: 195 YIRMARNKGNHCGIASFP 212
|
| >d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Caricain (protease omega) species: Papaya (Carica papaya) [TaxId: 3649]
Score = 100 bits (250), Expect = 4e-24
Identities = 44/250 (17%), Positives = 69/250 (27%), Gaps = 58/250 (23%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+PE D R++ + V QG+C SCW
Sbjct: 1 LPENVDWRKKG-----AVTPVRHQGSCGSCW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCT--------NCTRMHTKTPMSMCM 2285
A SA + + I++ V+ LS Q L+ +
Sbjct: 27 ---AFSAVATVEGINKIRTGKLVE--LSEQELVDCERRSHGCKGGYPPYALEYVAKNGIH 81
Query: 2286 GGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIRLY 2345
G +GR + P E R +
Sbjct: 82 LRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPF 141
Query: 2346 SCEGSINPRYI------HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVN-- 2397
H+V +G+GK S + Y L NS+ WGE+G +I+R
Sbjct: 142 QLYKGGIFEGPCGTKVDHAVTAVGYGK-SGGKGYILIKNSWGTAWGEKGYIRIKRAPGNS 200
Query: 2398 --MCSIEDSV 2405
+C + S
Sbjct: 201 PGVCGLYKSS 210
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 104 bits (258), Expect = 5e-24
Identities = 52/346 (15%), Positives = 104/346 (30%), Gaps = 58/346 (16%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH + + Y+ + D+ I ++ + + +SGH G V LK++ G
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHGG 65
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ + + +ST + I +GS D T+ VW
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 478 RKKNQAVSMNNTYQVTSVAFNDTAECV----------------------LTGGIDNDIKM 515
K++ + V ++G DN + +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 516 WDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG 575
WD+ + L GH+D + + +S +MD T+RIWD+ +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245
Query: 576 HQHNFEKNLLR-------------------------------CAWSVSGLYVTAGSADKC 604
+ + VS + +GS +
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQ 304
Query: 605 VYIWDTTTRR-IAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
I++ + + + + + V F K ++ + D +L
Sbjct: 305 FNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 101 bits (252), Expect = 2e-23
Identities = 41/368 (11%), Positives = 116/368 (31%), Gaps = 24/368 (6%)
Query: 111 STFTGHKSA-ITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS 169
+T GH ++ IT +Q++ + + TG+ D I ++D + + L +LSGH G + +++ +
Sbjct: 6 TTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-A 62
Query: 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKV 229
G S+ + V + + Y+++GS D L V
Sbjct: 63 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 230 WNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVF 289
W + S + ++ + + + V
Sbjct: 123 WKLPKESSVPDHGEEH-----------------DYPLVFHTPEENPYFVGVLRGHMASVR 165
Query: 290 RLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTS 349
++ + + D + +++ + + + + + + + + T
Sbjct: 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 225
Query: 350 NLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVM 409
++ + + + + + S H +
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 285
Query: 410 DLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK-MKGHSTFVNSCDPVRRGQLLIASGSD 468
+ +I ++ +++L G+ + + + + S + +G+ L+A+
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF--KGKTLVAAVEK 343
Query: 469 DCTVKVWD 476
D +
Sbjct: 344 DGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 95.3 bits (235), Expect = 5e-21
Identities = 50/355 (14%), Positives = 104/355 (29%), Gaps = 9/355 (2%)
Query: 1076 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1135
+L GH V++ + ++ + TG+ D+ ++V+ L H+ V + +
Sbjct: 6 TTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH- 63
Query: 1136 THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1195
+ S D V+ WD S + I TGS D T
Sbjct: 64 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI----VEYKNIKYIVTGSRDNT 119
Query: 1196 VKVWGLDYGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF 1254
+ VW L D + T ++ + + + +V+ +
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179
Query: 1255 NPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314
+ + + Q+ + + + + + ++ L + +
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ + I D + H + ++ Y S I
Sbjct: 240 QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVS 299
Query: 1375 SGDRTVKVWGLDYGDC-HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428
+ ++ L G H ++L D + V F KT KDG+ D
Sbjct: 300 GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.6 bits (215), Expect = 1e-18
Identities = 55/365 (15%), Positives = 110/365 (30%), Gaps = 22/365 (6%)
Query: 882 QGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYA-LSVCFVPGDRHV 940
+GH + V DN + A +++++ + L + ++ + G V
Sbjct: 9 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68
Query: 941 LVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
T + + ++ + V +VTG D +
Sbjct: 69 SGSTDRTV---------RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119
Query: 1001 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL 1060
+ +W+L S + EE H + + VS ++
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120
D T+ ++ + K L GH + S ++ + S D T+++W L+ G+ +
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT- 238
Query: 1121 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM 1180
+ S V + + H + ++
Sbjct: 239 ---------LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT 289
Query: 1181 SYDSTLIATGSGDRTVKVWGLDYGDC-HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1239
Y S I + ++ L G H ++L D + V F KT KDG+
Sbjct: 290 FYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSF 348
Query: 1240 QWDAD 1244
D
Sbjct: 349 LEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.5 bits (212), Expect = 4e-18
Identities = 44/352 (12%), Positives = 99/352 (28%), Gaps = 20/352 (5%)
Query: 85 HDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLW 144
+ + + + ++ + + +GH + ++Y G L +GS D + +W
Sbjct: 21 FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVW 79
Query: 145 DVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLT 204
D+ C H GH + + + ++V+ ++D + +W
Sbjct: 80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 139
Query: 205 EVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTV 264
E+ Y + V V +I D T+
Sbjct: 140 YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS----------------YDNTL 183
Query: 265 SKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKN 324
+V + L LS + I+ ++D D +++
Sbjct: 184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT 243
Query: 325 DEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDR 384
V + + V R + H + I SG +
Sbjct: 244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN 303
Query: 385 QIFIWSV-YGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435
Q I+++ G+ + + + + F + D + L+
Sbjct: 304 QFNIYNLRSGKLVHA-NILKDADQIWSVNFKGKTL-VAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.2 bits (201), Expect = 9e-17
Identities = 53/359 (14%), Positives = 103/359 (28%), Gaps = 42/359 (11%)
Query: 1048 VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1107
+ + + D ++++ KF + L GH V +L ++ L++ +
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 1108 VWGLDYGDCHKSLLAH-EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL---- 1162
H + + Y T S+D + W +
Sbjct: 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138
Query: 1163 -------------HFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1209
+F L GH V +S ++ +GS D T+ VW + C
Sbjct: 139 DYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 196
Query: 1210 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTG 1269
L H D + + + + S D ++ WD +N E + TL + +
Sbjct: 197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL----------- 245
Query: 1270 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL 1329
L +S R + +L
Sbjct: 246 --------VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL 297
Query: 1330 AVSLLDTTVKIFFLDTFKFFIS-LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1387
+ I+ L + K + + + S++ TL+A D + LD+
Sbjct: 298 VSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.6 bits (194), Expect = 8e-16
Identities = 52/368 (14%), Positives = 128/368 (34%), Gaps = 27/368 (7%)
Query: 198 TMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSE 257
T+ H+T V C+ ED+Y+I+G++D ++V++ ++ + + L +
Sbjct: 7 TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAH 63
Query: 258 DEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRT 317
++ S + ++K + NI G
Sbjct: 64 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG--------- 114
Query: 318 RSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIM----LLEGHGGEIFCSKYHPD 373
+++ + V+ K V ++ P + G
Sbjct: 115 ----SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170
Query: 374 GQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433
G + S YD + +W V + + + ++SGHT + + + + S D T+ +WD
Sbjct: 171 GNIVVSGSYDNTLIVWDVA-QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 229
Query: 434 LEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVT 493
LE G+ + ++GH+ V + + + + ++
Sbjct: 230 LENGELMYTLQGHTALVGLLRLSDKFLV----SAAADGSIRGWDANDYSRKFSYHHTNLS 285
Query: 494 SVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK-LRGHSDTVTGLSLSPDGSYILSNAMD 552
++ ++ +L G +N +++LR+ +V + +D + ++ + + D
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKD 344
Query: 553 NTVRIWDI 560
+ +
Sbjct: 345 GQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.1 bits (185), Expect = 1e-14
Identities = 46/315 (14%), Positives = 100/315 (31%), Gaps = 47/315 (14%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V++ + ++ + TG+ D+ ++V+ L H+ V + +
Sbjct: 6 TTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH- 63
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQV-------VTGGGDKSVKLW 1278
+ S D V+ WD + + L I VTG D ++ +W
Sbjct: 64 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
Query: 1279 QLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTV 1338
+L S + EE H + + VS ++ D T+
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183
Query: 1339 KIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG---------- 1388
++ + K L GH + S ++ + S D T+++W L+ G
Sbjct: 184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT 243
Query: 1389 ----------------------------DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG 1420
D + H +++ +T + + +
Sbjct: 244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN 303
Query: 1421 RVKQWDADNFERIVT 1435
+ ++ + + +
Sbjct: 304 QFNIYNLRSGKLVHA 318
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.1 bits (172), Expect = 5e-13
Identities = 46/250 (18%), Positives = 82/250 (32%), Gaps = 31/250 (12%)
Query: 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRG 459
+ GH +V+ + ++ T + D+ + V+D + + ++ GH V + G
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 460 QLLIASG-SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDL 518
L+ S + + N+T + + + ++TG DN + +W L
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 519 RTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH 578
S V D V V+ GH
Sbjct: 126 PKESSVPDHGEEHDYP-----------------------LVFHTPEENPYFVGVLRGHMA 162
Query: 579 NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPII 638
+ S G V +GS D + +WD + Y L GH + + +
Sbjct: 163 SV------RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216
Query: 639 MSASSDKTIY 648
+SAS D TI
Sbjct: 217 ISASMDTTIR 226
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.6 bits (150), Expect = 2e-10
Identities = 37/282 (13%), Positives = 70/282 (24%), Gaps = 9/282 (3%)
Query: 492 VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM 551
+T + F D V+TG D I+++D + +L GH V L + G + +
Sbjct: 16 ITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 73
Query: 552 DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611
+ + + + Y+ GS D +++W
Sbjct: 74 RTVRVWDIKKGCCTHVFEGHNSTVRCLD-------IVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 612 TRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVH 671
+ + P + + H + S V
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 186
Query: 672 TMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSI 731
+ K IL H + ++ K S +R + +
Sbjct: 187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 246
Query: 732 LRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESST 773
+ I ND Y T + T
Sbjct: 247 GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 288
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.8 bits (148), Expect = 4e-10
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 2/114 (1%)
Query: 1350 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1409
+L GH V++ + ++ + TG+ D+ ++V+ L H+ V + +
Sbjct: 6 TTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH- 63
Query: 1410 THYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNSVHLNSCPALEASND 1463
+ S D V+ WD + ++ + N + S D
Sbjct: 64 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 5e-10
Identities = 56/383 (14%), Positives = 112/383 (29%), Gaps = 43/383 (11%)
Query: 572 VMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQF 631
+ GH + + YV G+ DK + ++D+ ++ +L GH+G V +++
Sbjct: 7 TLRGHMTS-----VITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 61
Query: 632 HPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVV 691
I++S S+D+T+ + + C + R +V K+ + + DN +
Sbjct: 62 AHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120
Query: 692 DLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQIL 751
++ +L K + V +
Sbjct: 121 HVW--------------KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166
Query: 752 CCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGK 811
+ VV Y T K L L ++ + + + +
Sbjct: 167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 226
Query: 812 GKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTD 871
+ TA ++ + + + G
Sbjct: 227 IWDLENGELMYTLQGHTALVGLLR-------------------LSDKFLVSAAADGSIRG 267
Query: 872 SVRHLRSIHAQGHHSEVRALA-FSSDNLALVSACASQVKIWNRPSLSCLRTIDTG--SYA 928
+ S HH+ + A+ F + LVS +Q I+N S +
Sbjct: 268 WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQI 327
Query: 929 LSVCFVPGDRHVLVGTKDGRLLI 951
SV F V KDG+ +
Sbjct: 328 WSVNFKG-KTLVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 3e-08
Identities = 40/231 (17%), Positives = 80/231 (34%), Gaps = 14/231 (6%)
Query: 379 SSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ 438
+D + + +GV+ GH +V S G + + S D TL VWD+ + +
Sbjct: 135 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMK 192
Query: 439 RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFN 498
+ + GH+ + S + I S S D T+++WD ++ + +
Sbjct: 193 CLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 251
Query: 499 DTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIW 558
V D + N +K H ++ ++ IL + +N I+
Sbjct: 252 SDKFLVSA---AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 308
Query: 559 DIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWD 609
++R G+ + + + L V A D ++
Sbjct: 309 NLR---SGKLVHANILKDA----DQIWSVNFKGKTL-VAAVEKDGQSFLEI 351
|
| >d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Cruzain species: Trypanosoma cruzi [TaxId: 5693]
Score = 99.3 bits (246), Expect = 1e-23
Identities = 39/249 (15%), Positives = 65/249 (26%), Gaps = 53/249 (21%)
Query: 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVW 2234
P D R + + V DQG C SCW
Sbjct: 2 PAAVDWRA-----RGAVTAVKDQGQCGSCW------------------------------ 26
Query: 2235 DKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMC----MGGDSA 2290
A SA + + + + G
Sbjct: 27 --AFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVY 84
Query: 2291 AAWMYWINAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIRLYSCE-- 2348
Y +G T ++G I G + V
Sbjct: 85 TEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSW 144
Query: 2349 ---------GSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMC 2399
++ + H V ++G+ S+ PYW+ NS+ WGE+G +I +G N C
Sbjct: 145 MTYTGGVMTSCVSEQLDHGVLLVGYNDSA-AVPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203
Query: 2400 SIEDSVMAG 2408
+++ +
Sbjct: 204 LVKEEASSA 212
|
| >d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Proline-specific cysteine protease species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]
Score = 98.9 bits (245), Expect = 1e-23
Identities = 42/259 (16%), Positives = 81/259 (31%), Gaps = 76/259 (29%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P++ D RE + V +QG C SCW
Sbjct: 1 LPDSIDWRE-----NGAVVPVKNQGGCGSCW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A S + + I + + S Q L+ T C GG A+
Sbjct: 27 ---AFSTVAAVEGINQIVTGDLISL--SEQQLVDCTTANHG---------CRGGWMNPAF 72
Query: 2294 MYWINAGLVDGGDYGTHD--------------------VSMGRYIEGIGHAASVMGSSNP 2333
+ +N G ++ + + ++ + E A +
Sbjct: 73 QFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSV 132
Query: 2334 EVNNFEKVIRLYSCEGSINPRYI---HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLF 2390
++ + +LY I H++ ++G+G + ++ +W+ NS+ + WGE G
Sbjct: 133 TMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYG-TENDKDFWIVKNSWGKNWGESGYI 191
Query: 2391 KIRRGV----NMCSIEDSV 2405
+ R + C I
Sbjct: 192 RAERNIENPDGKCGITRFA 210
|
| >d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Falcipain 2 species: Plasmodium falciparum [TaxId: 5833]
Score = 99.6 bits (247), Expect = 2e-23
Identities = 33/261 (12%), Positives = 63/261 (24%), Gaps = 64/261 (24%)
Query: 2170 TDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQER 2229
+ +D R + V DQ C SCW
Sbjct: 14 EENFDHAAYDWRL-----HSGVTPVKDQKNCGSCW------------------------- 43
Query: 2230 TLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDS 2289
A S+ + + I+ + LS Q L+ + +
Sbjct: 44 -------AFSSIGSVESQYAIRKNKLIT--LSEQELVDCSFKNYGCNGGLINNAFEDMIE 94
Query: 2290 AAAWMYWINAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVI------- 2342
+ V + + + + +
Sbjct: 95 LGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRFLGPISISVAVSD 154
Query: 2343 -----RLYSCEGSINPRYIHSVKIIGWG---------KSSQNEPYWLCTNSYNQGWGEQG 2388
+ +G + H+V ++G+G K + Y++ NS+ Q WGE+G
Sbjct: 155 DFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERG 214
Query: 2389 LFKIRRGV----NMCSIEDSV 2405
I C +
Sbjct: 215 FINIETDESGLMRKCGLGTDA 235
|
| >d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin K species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.1 bits (243), Expect = 3e-23
Identities = 41/257 (15%), Positives = 74/257 (28%), Gaps = 74/257 (28%)
Query: 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVW 2234
P++ D R++ + V +QG C SCW
Sbjct: 2 PDSVDYRKKG-----YVTPVKNQGQCGSCW------------------------------ 26
Query: 2235 DKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWM 2294
A S+ + ++ ++ + LSPQ+L+ + C GG A+
Sbjct: 27 --AFSSVGALEGQLKKKTGKLLN--LSPQNLVDCVSEN---------DGCGGGYMTNAFQ 73
Query: 2295 YWINAG-LVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIRLYSCEGSI-- 2351
Y + Y G AA G N + + R + G +
Sbjct: 74 YVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSV 133
Query: 2352 ----------------------NPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGL 2389
N ++ + + +W+ NS+ + WG +G
Sbjct: 134 AIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGY 193
Query: 2390 FKIRRGV-NMCSIEDSV 2405
+ R N C I +
Sbjct: 194 ILMARNKNNACGIANLA 210
|
| >d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Vignain (bean endopeptidase) species: Castor bean (Ricinus communis) [TaxId: 3988]
Score = 98.1 bits (243), Expect = 4e-23
Identities = 48/260 (18%), Positives = 78/260 (30%), Gaps = 75/260 (28%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P + D R+ K + V DQG C SCW
Sbjct: 2 VPASVDWRK-----KGAVTSVKDQGQCGSCW----------------------------- 27
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A S + I++ V S Q L+ T+ C GG A+
Sbjct: 28 ---AFSTIVAVEGINQIKTNKLVSL--SEQELVDCDTDQ--------NQGCNGGLMDYAF 74
Query: 2294 MYWINAGLV--DGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIRLYSCEG-- 2349
+ G + + + A S+ G N N+ +++ + +
Sbjct: 75 EFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVS 134
Query: 2350 --------------------SINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGL 2389
S H V I+G+G + YW NS+ WGE+G
Sbjct: 135 VAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGY 194
Query: 2390 FKIRRGV----NMCSIEDSV 2405
++ RG+ +C I
Sbjct: 195 IRMERGISDKEGLCGIAMEA 214
|
| >d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Ervatamin B species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]
Score = 97.4 bits (241), Expect = 5e-23
Identities = 45/254 (17%), Positives = 69/254 (27%), Gaps = 73/254 (28%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P D R K + + +Q C SCW
Sbjct: 1 LPSFVDWRS-----KGAVNSIKNQKQCGSCW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A SA + + I++ + LS Q L+ T C GG A+
Sbjct: 27 ---AFSAVAAVESINKIRTGQLI--SLSEQELVDCDTASH---------GCNGGWMNNAF 72
Query: 2294 MYWINAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINP 2353
Y I G +D + G S+ G NN + + +
Sbjct: 73 QYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVT 132
Query: 2354 RYIHSVK---------------------IIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKI 2392
+I + + YW+ NS+ Q WG QG +
Sbjct: 133 VEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWM 192
Query: 2393 RRGV----NMCSIE 2402
R V +C I
Sbjct: 193 ERNVASSAGLCGIA 206
|
| >d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin X species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.6 bits (244), Expect = 8e-23
Identities = 49/282 (17%), Positives = 79/282 (28%), Gaps = 73/282 (25%)
Query: 2166 HSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGA---CQSCWVSHQPRTAGLKGLFSFIK 2222
H + +P+++D R + +Q C SCW
Sbjct: 26 HEYLSPADLPKSWDWRNVD--GVNYASITRNQHIPQYCGSCW------------------ 65
Query: 2223 YGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRM---HTKT 2279
A ++ S M+DRI I+ KG L + C N + +
Sbjct: 66 --------------AHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLS 111
Query: 2280 PMSMCMGGDSAAAWMYWINAG------------------LVDGGDYGTHDVSMGRYIEGI 2321
A +Y V + G
Sbjct: 112 VWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGR 171
Query: 2322 GHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYI------HSVKIIGWGKSSQNEPYWL 2375
+ + ++ P RL + G I Y H V + GWG S YW+
Sbjct: 172 EKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISD-GTEYWI 230
Query: 2376 CTNSYNQGWGEQGLFKIRRGVN--------MCSIEDSVMAGE 2409
NS+ + WGE+G +I +IE+ G+
Sbjct: 231 VRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGD 272
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 100 bits (248), Expect = 1e-22
Identities = 31/306 (10%), Positives = 70/306 (22%), Gaps = 21/306 (6%)
Query: 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCH 419
I + D + G F+ + G V + +G
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 420 IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQL---------LIASGSDDC 470
+ + DLE G+ + + + G
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 471 TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV------- 523
+ V+D + + + AF+ ++ + + D +
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 524 VQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKN 583
+ + L P + D P +++ + +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI-LI 278
Query: 584 LLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASS 643
Y + +D TR K+ ++ D++ +M
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKD 334
Query: 644 DKTIYL 649
D IY
Sbjct: 335 DGKIYT 340
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 89.2 bits (219), Expect = 5e-19
Identities = 26/222 (11%), Positives = 56/222 (25%), Gaps = 22/222 (9%)
Query: 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKF 413
I F + P + I ++ + E I + F
Sbjct: 129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM--EGRKIFAATTENSHDYAPAF 186
Query: 414 STDGCHIFTCSTDQTLAVWDLE-------KGQRIKKMKGHSTFVNSCDPVRRGQLLIASG 466
D +++ S D + + N V R +G
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS-EAG 245
Query: 467 SDDCTVK--------VWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDL 518
D V + ++ + + A + +D+
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305
Query: 519 RTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
+T +K+ + +T L LS D ++ D + + +
Sbjct: 306 KT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 83.8 bits (205), Expect = 3e-17
Identities = 31/369 (8%), Positives = 83/369 (22%), Gaps = 51/369 (13%)
Query: 1093 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG--RVKQ 1150
D LIA S + + + K + + V T F +
Sbjct: 14 DGDLIAFVSRGQ-AFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGI 70
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1210
+D + + V ++ + + + + L+ G
Sbjct: 71 YDYRTGKAEKFE-------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123
Query: 1211 LAHEDSVTGVTFVPKTHY----------FFTTSKDGRVKQWDADNFERIVTLHFNPNVYL 1260
+ E +T T + + + +D + + N + Y
Sbjct: 124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 183
Query: 1261 ----PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1316
+ +++ + E + +
Sbjct: 184 PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI--------------PGS 229
Query: 1317 VLCARVSPDSKLLAVSLLDTTVKIFFL-------DTFKFFISLYGHKLPVLSLDMSYDST 1369
++ P S D ++ I L L +
Sbjct: 230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 289
Query: 1370 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429
+ + + + + ++++T + DG++ + +
Sbjct: 290 YYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
Query: 1430 FERIVTLHI 1438
E T+
Sbjct: 346 PEDERTVET 354
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 80.3 bits (196), Expect = 4e-16
Identities = 31/356 (8%), Positives = 81/356 (22%), Gaps = 18/356 (5%)
Query: 1046 ARVSP-DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD- 1103
SP D L+A + F D ++ L + + D+ +
Sbjct: 8 EDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 1104 -RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162
+ ++ G + + +V + + + + D + + V
Sbjct: 65 GDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123
Query: 1163 HFFI----SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT 1218
G + + V+ ++ +
Sbjct: 124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-KIFAATTENSHDY 182
Query: 1219 GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLW 1278
F + + S D + P V +PL +
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV-IPLIPGSPNPT-KLVPRSM 240
Query: 1279 QLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTV 1338
E + + + + + +
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300
Query: 1339 KIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1394
+ + T K + K + L +S D + D + + L+ + +++
Sbjct: 301 LKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 79.5 bits (194), Expect = 7e-16
Identities = 39/306 (12%), Positives = 76/306 (24%), Gaps = 31/306 (10%)
Query: 368 SKYHP-----DGQYIASSGYDRQIFIWSV-YGECENIGVMSGHTGAVMDLKFSTDGCHIF 421
SK+ DG IA Q FI V + + ++ D F
Sbjct: 4 SKFAEDFSPLDGDLIAFVSRG-QAFIQDVSGTYVLKV----PEPLRIRYVRRGGDTKVAF 58
Query: 422 TCSTD--QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK 479
T L ++D G+ +K + + V + R G+ + + + V
Sbjct: 59 IHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 117
Query: 480 KNQAVSMNNTYQVTSVAFN----------DTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
K + + +T + G + I ++D+ +
Sbjct: 118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-T 176
Query: 530 HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR---PYVPGERCVKVMSGHQHNFEKNLL- 585
+ + D + + + D V+ + L
Sbjct: 177 ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 236
Query: 586 -RCAWSVSGLYVTAGSADKCVYIW-DTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASS 643
R S +G Y + I D R+ L + A
Sbjct: 237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE 296
Query: 644 DKTIYL 649
+
Sbjct: 297 KGVLLK 302
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 74.9 bits (182), Expect = 2e-14
Identities = 33/376 (8%), Positives = 86/376 (22%), Gaps = 37/376 (9%)
Query: 890 ALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVP-GDRHVLVGTKDG 947
A FS D + Q I + L+ + V + GT++G
Sbjct: 7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIR-YVRRGGDTKVAFIHGTREG 65
Query: 948 RLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLE 1007
L + E + ++++ + + V
Sbjct: 66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND----------------RFEI 109
Query: 1008 LVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIF 1067
+ + SR + + A P + + ++
Sbjct: 110 MTVDLETGKPTVIERSREAMITDFTISDN-----SRFIAYGFPLKHGETDGYVMQAIHVY 164
Query: 1068 FLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH-------KSL 1120
++ + + + DS + S + +
Sbjct: 165 DME-GRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI 223
Query: 1121 LAHEDSVTGVTFVPKTHYFFTTSKDG-RVKQWDADNFERIVTLHFFISLYGHKLPVLSLD 1179
S VP++ D + + + I L L
Sbjct: 224 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV 283
Query: 1180 MSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1239
+ + + + + + ++++T + DG++
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIY 339
Query: 1240 QWDADNFERIVTLHFN 1255
+ + E T+ +
Sbjct: 340 TFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 72.2 bits (175), Expect = 2e-13
Identities = 37/365 (10%), Positives = 90/365 (24%), Gaps = 32/365 (8%)
Query: 129 GHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIW 188
G +A S+ + DV I +R F+ + + F+ I+
Sbjct: 15 GDLIAFVSRG-QAFIQDV--SGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY 71
Query: 189 DADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSE 248
D TG + +L V+ + + A + + + + S
Sbjct: 72 DYRTGKA-EKFEENLGNVFAMG----VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126
Query: 249 QLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFG 308
+ + + ++ E + + ++ + D
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 186
Query: 309 IDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCS 368
++ L S + DR + + + + ++ G +
Sbjct: 187 DADSKNLYYLSYR---SLDPSPDR----------VVLNFSFEVVSKPFVIPLIPGSPNPT 233
Query: 369 KYHPDGQYIASSGY------DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFT 422
K P + Y R I G+ I + +
Sbjct: 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 293
Query: 423 CSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ 482
L +D++ K+ + + + DD + + K
Sbjct: 294 APEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTV-MVRKDDGKIYTFPLEKPED 348
Query: 483 AVSMN 487
++
Sbjct: 349 ERTVE 353
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 70.7 bits (171), Expect = 6e-13
Identities = 30/351 (8%), Positives = 79/351 (22%), Gaps = 50/351 (14%)
Query: 1034 TRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMSY 1092
+ ++ R D+K+ + + D + + V ++ +
Sbjct: 36 VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR 95
Query: 1093 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW- 1151
+ + + L+ G + E +T T + + +
Sbjct: 96 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155
Query: 1152 --DADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH-- 1207
+ + + DS + S +
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE 215
Query: 1208 -----KSLLAHEDSVTGVTFVPK------THYFFTTSKDGRVKQWDADNFERIVTLHFNP 1256
+ S VP+ Y R++ +
Sbjct: 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS 275
Query: 1257 NVYL------PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310
+ + + ++ TR
Sbjct: 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK--------------------------TRK 309
Query: 1311 LK-LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVL 1360
+ ++ + R+S D K + V D + F L+ + ++ K P++
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 70.3 bits (170), Expect = 7e-13
Identities = 33/364 (9%), Positives = 82/364 (22%), Gaps = 24/364 (6%)
Query: 82 SPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTD- 140
SP D +A G + T V+ I ++
Sbjct: 11 SPL-DGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 141 -IVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ ++D V + + D +TG
Sbjct: 67 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN---DRFEIMTVDLETGKPTVIE 123
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDE 259
+ + + ++ G + ++ + + + +
Sbjct: 124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 183
Query: 260 PDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRS 319
P + + + S + F + T+
Sbjct: 184 PAFDADSKNL--------YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235
Query: 320 MKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIAS 379
+ R + + +V + I+ LE + Y
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGD--YRMIIPLESSILIYSVPVHGEFAAYYQG 293
Query: 380 SGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR 439
+ + + V ++ + DL+ S D + D + + LEK +
Sbjct: 294 APEKGVLLKYDV-----KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348
Query: 440 IKKM 443
+ +
Sbjct: 349 ERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 66.8 bits (161), Expect = 1e-11
Identities = 29/367 (7%), Positives = 76/367 (20%), Gaps = 47/367 (12%)
Query: 176 VVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSND--AELKVWNVR 233
+ ++ I D K + V + L +++ R
Sbjct: 18 IAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR 74
Query: 234 DRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLAL 293
+ + + + + + L+ + +
Sbjct: 75 -------------TGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121
Query: 294 CISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFA 353
S I DF ++ +K + V Y ++
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME------------GR 169
Query: 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSV------YGECENIGVMSGHTGA 407
I + + D + + Y + V+ G+
Sbjct: 170 KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 229
Query: 408 VMDLKFSTDGCHIFTCSTDQT-------LAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
K D D + I ++ +
Sbjct: 230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 289
Query: 461 LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRT 520
+ + +D + + +T + + + V+ D I + L
Sbjct: 290 YY-QGAPEKGVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
Query: 521 NSVVQKL 527
+ +
Sbjct: 346 PEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 58.0 bits (138), Expect = 7e-09
Identities = 17/185 (9%), Positives = 46/185 (24%), Gaps = 16/185 (8%)
Query: 73 GEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDV-------ISTFTGHKSAITVIQY 125
E + + DS L + + + +
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235
Query: 126 DPLGHRLATGS---KDTDIVLWDVVAECGLHRL-SGHKGVITDIRFM-SQPGHHFVVSSA 180
P G D + + G +R+ + I + +
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295
Query: 181 KDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDT 240
+ + +D T + + + + + ++ +D ++ + + D T
Sbjct: 296 EKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351
Query: 241 EDKDK 245
+ DK
Sbjct: 352 VETDK 356
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 53.3 bits (126), Expect = 2e-07
Identities = 29/365 (7%), Positives = 78/365 (21%), Gaps = 45/365 (12%)
Query: 36 GRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVA-Y 94
G +A + I D+ +L E + + D+ +
Sbjct: 15 GDLIAFVSRGQAFIQDV------------SGTYVLKVPEPLRIRYVRRGGDTKVAFIHGT 62
Query: 95 TNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHR 154
G T F + + + D G + +I+ D+
Sbjct: 63 REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122
Query: 155 LSGHKGVITDIRFMSQP--------GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEV 206
+ +ITD H + ++D + +
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-KIFAATTENSHD 181
Query: 207 WGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSK 266
+ + L S + + ++ + + L P+ T
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVL-----NFSFEVVSKPFVIPLIPGSPNPTKLV 236
Query: 267 IEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDE 326
+ K + + + ++
Sbjct: 237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY--------SVPVHGEFA 288
Query: 327 VTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQI 386
+ + K + + + + D + + D +I
Sbjct: 289 AYYQGAPEKGVLLKYDVKTRK----------VTEVKNNLTDLRLSADRKTVMVRKDDGKI 338
Query: 387 FIWSV 391
+ + +
Sbjct: 339 YTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.5 bits (103), Expect = 1e-04
Identities = 19/272 (6%), Positives = 56/272 (20%), Gaps = 27/272 (9%)
Query: 510 DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYIL--SNAMDNTVRIWDIRPYVPGE 567
+ D+ V++ + + D + + I+D R
Sbjct: 23 RGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR-----T 75
Query: 568 RCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVN 627
+ + N +G + + + D T + +
Sbjct: 76 GKAEKFEENLGNVF----AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131
Query: 628 DVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHG- 686
D I K + + T + +
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 191
Query: 687 ------NDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCD------KAGSILRS 734
++ + S + + +P +AG +
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNF-SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250
Query: 735 GKGRVHTMVNDKHRQILCCHGNDNVVDLFYFC 766
+ + +N ++ + ++
Sbjct: 251 DMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282
|
| >d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Chymopapain species: Papaya (Carica papaya) [TaxId: 3649]
Score = 94.6 bits (234), Expect = 5e-22
Identities = 44/249 (17%), Positives = 75/249 (30%), Gaps = 58/249 (23%)
Query: 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVW 2234
P++ D R + + V +QGAC SCW
Sbjct: 2 PQSIDWRAKG-----AVTPVKNQGACGSCW------------------------------ 26
Query: 2235 DKAISAASVMSDRICIQSKGQVKPILSPQHLI-CSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A S + + I + ++ LS Q L+ C + S+ ++
Sbjct: 27 --AFSTIATVEGINKIVTGNLLE--LSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHT 82
Query: 2294 MYWINAGLVDGGDYGTHDVSMGRYIEGIGH----------AASVMGSSNPEVNNFEKVIR 2343
T I G A + V K +
Sbjct: 83 SKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQ 142
Query: 2344 LYSC---EGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV---- 2396
LY +G + H+V +G+G +S + Y + NS+ WGE+G +++R
Sbjct: 143 LYKSGVFDGPCGTKLDHAVTAVGYG-TSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQ 201
Query: 2397 NMCSIEDSV 2405
C + S
Sbjct: 202 GTCGVYKSS 210
|
| >d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin V species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.3 bits (233), Expect = 6e-22
Identities = 44/262 (16%), Positives = 74/262 (28%), Gaps = 76/262 (29%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P++ D R++ + V +Q C SCW
Sbjct: 1 LPKSVDWRKKG-----YVTPVKNQKQCGSCW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A SA + ++ ++ V S N C GG A A+
Sbjct: 27 ---AFSATGALEGQMFRKTGKLVS---------LSEQNLVDCSRPQGNQGCNGGFMARAF 74
Query: 2294 MYWINAGLVDGGDY-----GTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIRLYSCE 2348
Y G +D + + + E + V +
Sbjct: 75 QYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPIS 134
Query: 2349 GSINPRY---------------------IHSVKIIGW---GKSSQNEPYWLCTNSYNQGW 2384
+++ + H V ++G+ G +S N YWL NS+ W
Sbjct: 135 VAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEW 194
Query: 2385 GEQGLFKIRRGV-NMCSIEDSV 2405
G G KI + N C I +
Sbjct: 195 GSNGYVKIAKDKNNHCGIATAA 216
|
| >d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Ervatamin C species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]
Score = 93.1 bits (230), Expect = 1e-21
Identities = 48/252 (19%), Positives = 75/252 (29%), Gaps = 76/252 (30%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+PE D R++ + V +QG+C SCW
Sbjct: 1 LPEQIDWRKKG-----AVTPVKNQGSCGSCW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A S S + I++ + LS Q L+ C+GG A+
Sbjct: 27 ---AFSTVSTVESINQIRTGNLIS--LSEQELVDCDKKNH---------GCLGGAFVFAY 72
Query: 2294 MYWINAGLVDGGDY----------------GTHDVSMGRYIEGIGHAASVMGSSNPEVNN 2337
Y IN G +D + D G + V
Sbjct: 73 QYIINNGGIDTQANYPYKAVQGPCQAASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAI 132
Query: 2338 FEKVIRLYSCEGSI-----NPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKI 2392
+ I + H V I+G+ YW+ NS+ + WGE+G ++
Sbjct: 133 DASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY-----QANYWIVRNSWGRYWGEKGYIRM 187
Query: 2393 RR--GVNMCSIE 2402
R G +C I
Sbjct: 188 LRVGGCGLCGIA 199
|
| >d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Actinidin species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]
Score = 92.8 bits (229), Expect = 2e-21
Identities = 45/259 (17%), Positives = 72/259 (27%), Gaps = 74/259 (28%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P D R + + QG C CW
Sbjct: 1 LPSYVDWRS-----AGAVVDIKSQGECGGCW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A SA + + I + + LS Q LI C GG +
Sbjct: 27 ---AFSAIATVEGINKIVTGVLIS--LSEQELIDCGRTQNTRG-------CNGGYITDGF 74
Query: 2294 MYWINAGLVDG-GDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIR--------- 2343
+ IN G ++ +Y ++ + + N E ++
Sbjct: 75 QFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVS 134
Query: 2344 ---------LYSCEGSINPRYI-----HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGL 2389
I H+V I+G+G + YW+ NS++ WGE+G
Sbjct: 135 VALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYG-TEGGIDYWIVKNSWDTTWGEEGY 193
Query: 2390 FKIRR---GVNMCSIEDSV 2405
+I R G C I
Sbjct: 194 MRILRNVGGAGTCGIATMP 212
|
| >d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Papain species: Papaya (Carica papaya) [TaxId: 3649]
Score = 92.0 bits (227), Expect = 3e-21
Identities = 46/254 (18%), Positives = 76/254 (29%), Gaps = 70/254 (27%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
IPE D R+ K + V +QG+C SCW
Sbjct: 1 IPEYVDWRQ-----KGAVTPVKNQGSCGSCW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMC--------- 2284
A SA + I I++ S Q L+ + P S
Sbjct: 27 ---AFSAVVTIEGIIKIRTGNLN--EYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIH 81
Query: 2285 ---------MGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEV 2335
+ + A ++ Y + V+ ++ +
Sbjct: 82 YRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF 141
Query: 2336 NNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRG 2395
+ I + C ++ H+V +G+G Y L NS+ GWGE G +I+RG
Sbjct: 142 QLYRGGIFVGPCGNKVD----HAVAAVGYG-----PNYILIKNSWGTGWGENGYIRIKRG 192
Query: 2396 VN----MCSIEDSV 2405
+C + S
Sbjct: 193 TGNSYGVCGLYTSS 206
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.9 bits (234), Expect = 8e-21
Identities = 51/369 (13%), Positives = 109/369 (29%), Gaps = 57/369 (15%)
Query: 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM- 1180
AH+ + V+ + + S DG +K WD + S + HK + +D+
Sbjct: 12 AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 1181 ------SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+++ L+AT S + + + D K ++ + + +
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS-------- 121
Query: 1235 DGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETK 1294
L + + L ++V + +W+ +
Sbjct: 122 --------------FWALKWGASNDRLLSHRLVATDVKGTTYIWKFH---PFADESNSLT 164
Query: 1295 DVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI---- 1350
L + + +S L+A + TV+I L T +
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 223
Query: 1351 --SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW----------------GLDYGDCHK 1392
S+ + + S+ S +L+A +
Sbjct: 224 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 283
Query: 1393 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNSVHL 1452
AH V ++F + DG+++ WD ERI TL++ + + + +
Sbjct: 284 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV 343
Query: 1453 NSCPALEAS 1461
+ A
Sbjct: 344 DEHGDSLAE 352
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.3 bits (209), Expect = 1e-17
Identities = 59/440 (13%), Positives = 121/440 (27%), Gaps = 101/440 (22%)
Query: 153 HRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCF------KTMAAHLTEV 206
+ H I + + F VS + D ++K+WD D + H + +
Sbjct: 8 NAGKAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63
Query: 207 WGVCVMR-------EDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDE 259
V V++ E + + S +L + + +
Sbjct: 64 HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK------------------- 104
Query: 260 PDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRS 319
+I E +L K + L S+ L D
Sbjct: 105 -----------VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-DVKGTTYIWK 152
Query: 320 MKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIAS 379
DE + T L + G IA+
Sbjct: 153 FHPFADESNSLTLNWS-----------PTLELQGTVESPMTPSQFATSVDISERG-LIAT 200
Query: 380 SGYDRQIFIWSVYGECENIGVMSGHT-----GAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434
+ + I + S H+ ++ +KFS G + + L
Sbjct: 201 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 260
Query: 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTS 494
+ + +++ ++ V + ++ V S
Sbjct: 261 YETEFGERI--------------------------GSLSVPTHSSQASLGEFAHSSWVMS 294
Query: 495 VAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV----TGLSLSPDGSYILSNA 550
++FND+ E + + G D ++ WD++T + L H D + L++ G +
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE-- 352
Query: 551 MDNTVRIWDIRPYVPGERCV 570
++D++ G R
Sbjct: 353 ----PGVFDVKFLKKGWRSG 368
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.3 bits (209), Expect = 1e-17
Identities = 41/355 (11%), Positives = 91/355 (25%), Gaps = 66/355 (18%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE-----CENIGVMSGHTGAVMDLK 412
+ H +IF + S D + +W + H + +
Sbjct: 10 GKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 413 F-------STDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVN-------------- 451
+ + C + T S L + + + KK+ +
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 452 SCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ-------------------AVSMNNTYQV 492
R + + T +W M +
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187
Query: 493 TSVAFNDTAECVLTGGIDNDIK------MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYI 546
TSV ++ + TG + ++ + L + +S+++ + SP GS +
Sbjct: 188 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246
Query: 547 LSNAMDNTVRIWDIRPYVPGERCVKVMSGHQ--------HNFEKNLLRCAWSVSGLYVTA 598
N+ + GER + ++ +++ SG + +
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306
Query: 599 GSADKCVYIWDTTTRRIAYKLPGHNGSVND----VQFHPKEPIIMSASSDKTIYL 649
D + WD T+ L H + + + +L
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 361
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.0 bits (203), Expect = 7e-17
Identities = 41/403 (10%), Positives = 96/403 (23%), Gaps = 57/403 (14%)
Query: 110 ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDV-----------VAECGLHRLSGH 158
+ H + I + + S D + +WD +H+ H
Sbjct: 7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 159 KGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLT----------EVWG 208
+ V +++ + + D K + W
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 209 VCVMRED-----SYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLT 263
+ + L++ +W +D S L E +
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 264 VSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRK 323
V I + +Q+ L+ + S +
Sbjct: 185 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244
Query: 324 ------NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYI 377
+ + + + ++ + H + ++ G+ +
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304
Query: 378 ASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD----LKFSTDGCHIFTCSTDQTLAVW 432
S+G+D ++ W V E I ++ H + L G + V
Sbjct: 305 CSAGWDGKLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF---DVK 359
Query: 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVW 475
L+KG R + + D +++ +
Sbjct: 360 FLKKGWRSGMGADLNE-------------SLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.5 bits (194), Expect = 1e-15
Identities = 45/428 (10%), Positives = 111/428 (25%), Gaps = 76/428 (17%)
Query: 881 AQGHHSEVRALAFSSDNLALVSACASQVKIWN-------RPSLSCLRTIDTGSYALSVCF 933
+ H +++ +++ + S +K+W+ P S V
Sbjct: 10 GKAHDADIFSVSACNSFTVSCSG-DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 934 V-------PGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPD-----QFN 981
+ V + G LL I + + + +L M ++
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 982 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1041
+ L ++V + +W+ + L + +
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFH---PFADESNSLTLNWSPTLELQGTVESPMTPSQ 185
Query: 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI------SLYGHKLPVLSLDMSYDST 1095
+S L+A + TV+I L T + S+ + + S+ S +
Sbjct: 186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155
L+A + T + +
Sbjct: 245 LLAIAHDSNSFGCI--------------------------------TLYETEFGERIGSL 272
Query: 1156 FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED 1215
+ + + H V+SL + + + D ++ W + + +L H D
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332
Query: 1216 SV----TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGG 1271
+ + +D ++ + L +
Sbjct: 333 DIEIEEDILAVDEHGDSLAEPGV------FDVKFLKKGWRSG----MGADLNESLCCVCL 382
Query: 1272 DKSVKLWQ 1279
D+S++ ++
Sbjct: 383 DRSIRWFR 390
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.7 bits (179), Expect = 7e-14
Identities = 36/334 (10%), Positives = 82/334 (24%), Gaps = 42/334 (12%)
Query: 444 KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQ------------ 491
K H + S S S D +KVWD + + + +Y
Sbjct: 11 KAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 492 -VTSVAFNDTAECVL-TGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSN 549
+ ++ + C++ T D+ + + +K+ + + + L
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 550 AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWD 609
N + + + H E N L WS
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS-----------------PT 170
Query: 610 TTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGR 669
+ + V + +I + ++ T+ + E +
Sbjct: 171 LELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 670 VHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAG 729
+ + C + ++ P H +A
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-------ERIGSLSVPTHSSQAS 282
Query: 730 SILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLF 763
+ V ++ + + LC G D + +
Sbjct: 283 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.9 bits (156), Expect = 5e-11
Identities = 14/128 (10%), Positives = 35/128 (27%), Gaps = 7/128 (5%)
Query: 522 SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE 581
+ + H + +S + +S + D +++WD + K S H
Sbjct: 5 ATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 582 KNLLRCAWSVS-----GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEP 636
+ + ++ V S + + T K+ + D
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 637 IIMSASSD 644
+ +
Sbjct: 123 WALKWGAS 130
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 89.7 bits (220), Expect = 1e-19
Identities = 52/295 (17%), Positives = 89/295 (30%), Gaps = 11/295 (3%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
GH I DG+ + S+ + I W + N H + +K ++ G
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
D V G K + IA + + ++
Sbjct: 68 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127
Query: 478 RKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGL 537
K + + +Y + VA ++ + V GG D+ + ++ L SV + +
Sbjct: 128 GKLTE---VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV---KTIVHPAE 181
Query: 538 SLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVT 597
S S + + I V + + + K + T
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241
Query: 598 AGSADKCVYIWDTTT---RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
GS D V +W+ I K SVN V + E I+SA D I
Sbjct: 242 -GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 78.5 bits (191), Expect = 8e-16
Identities = 44/313 (14%), Positives = 86/313 (27%), Gaps = 24/313 (7%)
Query: 1078 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVPKT 1136
YGH + +L S D + + + + W + G ++ H +TG+
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSK 66
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
FT S D +K A L L +S D +
Sbjct: 67 GDLFTVSWDDHLKVVPAGGSG---VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNP 1256
+ S + S ++ + V + + + T+
Sbjct: 124 IYSHGKLTEVPIS---YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180
Query: 1257 NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1316
+ + N T + +
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA--------------K 226
Query: 1317 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF--FISLYGHKLPVLSLDMSYDSTLIATG 1374
V C SPD+ LA LD +V ++ ++ I H + ++ + + T I +
Sbjct: 227 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSA 286
Query: 1375 SGDRTVKVWGLDY 1387
D +K W + +
Sbjct: 287 GQDSNIKFWNVPF 299
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 75.8 bits (184), Expect = 6e-15
Identities = 42/295 (14%), Positives = 84/295 (28%), Gaps = 14/295 (4%)
Query: 152 LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMA-AHLTEVWGVC 210
GH IT + + S+ + + WD TG + H T + G+
Sbjct: 5 DQVRYGHNKAITALSSS--ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 211 VMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQ 270
+ +D V D +KLS Q L +S D + +
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 271 IINELKNLSTGKKK----------WLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSM 320
I L+ Q + S + + A + + +
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 321 KRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASS 380
+ +KV + A H ++ C + PD +A+
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 381 GYDRQIFIWSV-YGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434
D + +W++ I + H + ++ + I + D + W++
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 73.5 bits (178), Expect = 3e-14
Identities = 43/317 (13%), Positives = 82/317 (25%), Gaps = 26/317 (8%)
Query: 1114 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKL 1173
G + H ++T ++ F+ +G + WD H
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-----PDVHAT 56
Query: 1174 PVLSLDMSYDSTLIATGSGD--RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFT 1231
+ + + L D + V G G+
Sbjct: 57 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116
Query: 1232 TSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADE 1291
E ++ + + + V GG D V +++L SV+
Sbjct: 117 ACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 176
Query: 1292 ETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS 1351
S + + + + + S
Sbjct: 177 VHPAEITSVAFSNNGAFLVATDQSRKVI-----------------PYSVANNFELAHTNS 219
Query: 1352 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVPK 1409
H V + S D+ +ATGS D +V VW ++ H ++ AH S
Sbjct: 220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN 279
Query: 1410 THYFFTTSKDGRVKQWD 1426
+ +D +K W+
Sbjct: 280 ETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 68.1 bits (164), Expect = 2e-12
Identities = 36/294 (12%), Positives = 80/294 (27%), Gaps = 11/294 (3%)
Query: 109 VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLS-GHKGVITDIRF 167
+ GH AIT + G L + + I WD+ H +IT I+
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 168 MSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAEL 227
S+ V V + ++ G+ V + ++
Sbjct: 64 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123
Query: 228 KVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQ 287
+ + + + ++ ++ ++ D V ++ + + + +
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183
Query: 288 VFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGR 347
+ + + + + T ++ V+ G
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243
Query: 348 TSNLF----------APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSV 391
N PI++ H S + I S+G D I W+V
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.2 bits (159), Expect = 9e-12
Identities = 28/296 (9%), Positives = 74/296 (25%), Gaps = 13/296 (4%)
Query: 193 GDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQ 252
G + H + + + L S + + W++ +
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 253 LLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTT 312
S+ + ++++ + K +++ + D
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121
Query: 313 QELRTRSMKRKND----------EVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHG 362
+ + + + KV +++ ++
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181
Query: 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFT 422
+ + + E + + HT V + +S D + T
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241
Query: 423 CSTDQTLAVWDLEKG--QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWD 476
S D ++ VW++ K I H+ + + S D +K W+
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTI-VSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.9 bits (148), Expect = 2e-10
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 1352 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVPKT 1410
YGH + +L S D + + + + W + G ++ H +TG+
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSK 66
Query: 1411 HYFFTTSKDGRVKQWDADN 1429
FT S D +K A
Sbjct: 67 GDLFTVSWDDHLKVVPAGG 85
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.4 bits (144), Expect = 8e-10
Identities = 30/250 (12%), Positives = 50/250 (20%), Gaps = 5/250 (2%)
Query: 522 SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE 581
S+ Q GH+ +T LS S DG + S + + WDI +V H
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS----TGISNRVFPDV-HATM 57
Query: 582 KNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSA 641
++ V+ K V + + + I ++A
Sbjct: 58 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 117
Query: 642 SSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDE 701
L Q H
Sbjct: 118 CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177
Query: 702 SSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVD 761
+ + + HT H + C
Sbjct: 178 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237
Query: 762 LFYFCTKDES 771
+ D S
Sbjct: 238 RLATGSLDNS 247
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.4 bits (131), Expect = 3e-08
Identities = 32/288 (11%), Positives = 70/288 (24%), Gaps = 17/288 (5%)
Query: 929 LSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIP-AHSQELWSVAMLPDQFNPNVYLP 987
++ + + +G + DI G P H+ + + V
Sbjct: 16 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD 75
Query: 988 LQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCAR 1047
++VV GG + ++ H +
Sbjct: 76 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 135
Query: 1048 VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1107
S + + + V ++ + T +A + +
Sbjct: 136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV 195
Query: 1108 VWGLDYGDC------------HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155
S H V V++ P T S D V W+ +
Sbjct: 196 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 255
Query: 1156 FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1203
+ H + ++ + + T I + D +K W + +
Sbjct: 256 PSDHPIIIKG----AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVPF 299
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.6 bits (129), Expect = 6e-08
Identities = 22/216 (10%), Positives = 57/216 (26%), Gaps = 4/216 (1%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTG 406
S + + + + DG ++ Y I +
Sbjct: 84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN--SSC 141
Query: 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASG 466
+ + T V + S
Sbjct: 142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 201
Query: 467 SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK 526
+ + +T +V V+++ + TG +DN + +W++ S
Sbjct: 202 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 261
Query: 527 LR--GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
+ H+ + + + + I+S D+ ++ W++
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.9 bits (122), Expect = 4e-07
Identities = 32/347 (9%), Positives = 72/347 (20%), Gaps = 55/347 (15%)
Query: 568 RCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP-GHNGSV 626
+V GH K + + S G + + A+ + WD +T P H +
Sbjct: 3 SIDQVRYGHN----KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 58
Query: 627 NDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHG 686
++ K + + D + D + +
Sbjct: 59 TGIKTTSKGDLFTVSWDDHLKVV-------------------PAGGSGVDSSKAVANKLS 99
Query: 687 NDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDK 746
+ + + + K + ++ + + K
Sbjct: 100 SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSK 159
Query: 747 HRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDD 806
+ + V + S + + + +
Sbjct: 160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS 219
Query: 807 TEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSL 866
K V + T S + ++
Sbjct: 220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM-------------------------- 253
Query: 867 GGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACA-SQVKIWN 912
+ I H + +VSA S +K WN
Sbjct: 254 ----NKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.1 bits (120), Expect = 7e-07
Identities = 28/302 (9%), Positives = 72/302 (23%), Gaps = 24/302 (7%)
Query: 1043 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMSYDSTLIATGS 1101
+ S D K L + + + + + T H + + + L
Sbjct: 15 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 74
Query: 1102 GD--RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1159
D + V G G+ E
Sbjct: 75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP 134
Query: 1160 VTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1219
++ + + +++ + SG +V + + S+ +
Sbjct: 135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 194
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQ 1279
V + + + P +++ TG D SV +W
Sbjct: 195 VATDQSRKVIPYSVANNFELAHTNSWTFHTA--KVACVSWSPDNVRLATGSLDNSVIVWN 252
Query: 1280 LELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVK 1339
+ S ++ H + + + + + + + D+ +K
Sbjct: 253 MN-------------KPSDHPIIIKGAHAMS------SVNSVIWLNETTIVSAGQDSNIK 293
Query: 1340 IF 1341
+
Sbjct: 294 FW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.8 bits (119), Expect = 1e-06
Identities = 37/305 (12%), Positives = 83/305 (27%), Gaps = 29/305 (9%)
Query: 957 GEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREAD 1016
G I + H++ + +++ D + + + + W + NR
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGK----------TLFSADAEGHINSWDISTGISNRVFP 51
Query: 1017 EETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI 1076
+ + K S T+ ++ + + ++ +
Sbjct: 52 DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG 111
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT-------- 1128
+ S+ S + + D + V
Sbjct: 112 DIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS 171
Query: 1129 ---------GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLD 1179
+T V ++ + ++ + L S H V +
Sbjct: 172 EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 231
Query: 1180 MSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVPKTHYFFTTSKDGR 1237
S D+ +ATGS D +V VW ++ H ++ AH S + +D
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291
Query: 1238 VKQWD 1242
+K W+
Sbjct: 292 IKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.1 bits (112), Expect = 7e-06
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 437 GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR--KKNQAVSMNNTYQVTS 494
G + GH+ + + G+ L S + + WD N+ + +T
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTL-FSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 495 VAFNDTAECVLTGGIDNDIKMWDLRTNSV 523
+ + T D+ +K+ + V
Sbjct: 61 IKTTSK-GDLFTVSWDDHLKVVPAGGSGV 88
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.4 bits (105), Expect = 6e-05
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 1388 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
G + H ++T ++ F+ +G + WD
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 50
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (97), Expect = 5e-04
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDTG--SYALSVCF 933
GH+ + AL+ S+D L SA A + W+ + R + +
Sbjct: 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 0.001
Identities = 14/143 (9%), Positives = 32/143 (22%), Gaps = 3/143 (2%)
Query: 1317 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMSYDSTLIATGS 1375
+ S D K L + + + + + T H + + + L
Sbjct: 15 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 74
Query: 1376 GD--RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1433
D + V G G+ E
Sbjct: 75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP 134
Query: 1434 VTLHICSCSLNSPMNSVHLNSCP 1456
++ + +L++ V +
Sbjct: 135 ISYNSSCVALSNDKQFVAVGGQD 157
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 89.6 bits (220), Expect = 2e-19
Identities = 35/292 (11%), Positives = 74/292 (25%), Gaps = 7/292 (2%)
Query: 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFT 422
G P G I ++ V + + + H+ K S G + +
Sbjct: 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL-TDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 423 CSTDQTLAVWDLEKGQRI--KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK 480
+ +WD + I + S V + + A G
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135
Query: 481 NQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLS 540
+ + + +D + + + +
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195
Query: 541 PDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN--FEKNLLRCAWSVSGLYVTA 598
A + V G + N ++ WS G + +
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255
Query: 599 GSADKCVYIWDTTTRRIAYKLPGHNG-SVNDVQFHPKEPIIMSASSDKTIYL 649
SADK + IW+ T ++ +P + + ++S S++ I
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 79.9 bits (195), Expect = 3e-16
Identities = 45/267 (16%), Positives = 83/267 (31%), Gaps = 18/267 (6%)
Query: 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQI-FIWSVYGECENIGVMSGHTGAVMDL- 411
+ H + +K P G Y AS + + + +G V D+
Sbjct: 50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS 109
Query: 412 --KFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD 469
S + + R +I+ D+
Sbjct: 110 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 169
Query: 470 CTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK--- 526
P K ++ +T V SV +N + G D I +++ +
Sbjct: 170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 229
Query: 527 ----LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEK 582
HS +V GL+ SPDG+ I S + D T++IW++ + K + E
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA----TLKVEKTIPVG-TRIED 284
Query: 583 NLLRCAWSVSGLYVTAGSADKCVYIWD 609
L W+ + + SA+ + +
Sbjct: 285 QQLGIIWT--KQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 78.0 bits (190), Expect = 1e-15
Identities = 36/303 (11%), Positives = 74/303 (24%), Gaps = 12/303 (3%)
Query: 1085 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1144
+ L + I +G +V + + H T P +Y +
Sbjct: 20 AVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 1145 DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1204
G V+ WD ++ PV + +S IA R +
Sbjct: 79 HGNVRIWDTTQTTH----ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134
Query: 1205 DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQI 1264
+ + + K F +
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194
Query: 1265 QVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP 1324
G + + D V + + V SP
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD------SLKNVAHSGSVFGLTWSP 248
Query: 1325 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGH-KLPVLSLDMSYDSTLIATGSGDRTVKVW 1383
D +A + D T+KI+ + T K ++ ++ L + + + + S + +
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Query: 1384 GLD 1386
+
Sbjct: 309 NPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 74.6 bits (181), Expect = 2e-14
Identities = 34/319 (10%), Positives = 82/319 (25%), Gaps = 25/319 (7%)
Query: 159 KGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYL 218
+G + + G + V + + H + Y
Sbjct: 17 RGTAVVLGN-TPAGDKIQYCNGTS--VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC 73
Query: 219 ISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNL 278
SG +++W+ + I S + +
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD---------------ISWDSESKRIA 118
Query: 279 STGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKV 338
+ G+ + + N+ A +++ +R + +
Sbjct: 119 AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 178
Query: 339 QKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENI 398
K + G + + Y G +F +
Sbjct: 179 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 238
Query: 399 GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR 458
G + G T +S DG I + S D+T+ +W++ + K + + + +
Sbjct: 239 GSVFGLT-------WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291
Query: 459 GQLLIASGSDDCTVKVWDP 477
+ + S S + + +P
Sbjct: 292 TKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 73.8 bits (179), Expect = 3e-14
Identities = 29/305 (9%), Positives = 68/305 (22%), Gaps = 16/305 (5%)
Query: 1127 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTL 1186
+ P + V + H S
Sbjct: 20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT------EHSHQTTVAKTSPSGYY 72
Query: 1187 IATGSGDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1244
A+G V++W V +++ ++ +
Sbjct: 73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132
Query: 1245 NFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLS 1304
+ + + + V++ + K H
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH---- 188
Query: 1305 LLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDM 1364
+ + + + L + + H V L
Sbjct: 189 --TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 246
Query: 1365 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVK 1423
S D T IA+ S D+T+K+W + K++ + + + S +G +
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306
Query: 1424 QWDAD 1428
+ +
Sbjct: 307 FVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 70.3 bits (170), Expect = 5e-13
Identities = 39/318 (12%), Positives = 79/318 (24%), Gaps = 30/318 (9%)
Query: 121 TVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSA 180
V+ P G ++ + + + V + + H T + P ++ S
Sbjct: 21 VVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTS--PSGYYCASGD 77
Query: 181 KDTFVKIWDADTGDCF--KTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDI 238
V+IWD T+ V + E + + E +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 239 DTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSI 298
+ + + + ++
Sbjct: 138 SNGNLTG-----------------------QARAMNSVDFKPSRPFRIISGSDDNTVAIF 174
Query: 299 TLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLL 358
F + + + V D +T +
Sbjct: 175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 234
Query: 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMDLKFSTDG 417
H G +F + PDG IAS+ D+ I IW+V + E + G L
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT-IPVGTRIEDQQLGIIWTK 293
Query: 418 CHIFTCSTDQTLAVWDLE 435
+ + S + + + E
Sbjct: 294 QALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.1 bits (159), Expect = 1e-11
Identities = 46/331 (13%), Positives = 88/331 (26%), Gaps = 30/331 (9%)
Query: 916 LSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAM 975
L G+ A+ + P + + V +G+ E HS +
Sbjct: 9 FPSLPRTARGT-AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKT 66
Query: 976 LPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1035
P + +G +V++W + + R
Sbjct: 67 SPSGY----------YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116
Query: 1036 TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST 1095
+ E F +
Sbjct: 117 IAAVGEGRER----------------FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 160
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155
I +GS D TV ++ + H V V + P F +T DG + ++ +
Sbjct: 161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220
Query: 1156 FERIVTLHFFI-SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE 1214
+ H V L S D T IA+ S D+T+K+W + K++
Sbjct: 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 280
Query: 1215 D-SVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1244
+ + + S +G + + +
Sbjct: 281 RIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.2 bits (149), Expect = 2e-10
Identities = 32/317 (10%), Positives = 76/317 (23%), Gaps = 38/317 (11%)
Query: 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS 1101
+ +P + T+V + + H S A+G
Sbjct: 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 1102 GDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1159
V++W V +++ ++ +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 1160 VTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1219
+ I +GS D TV ++ + H V
Sbjct: 138 SNGNLTGQARAMNSVD---FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNV------------YLPLQIQVV 1267
V + P F +T DG + ++ + + + + P ++
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254
Query: 1268 TGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1327
+ DK++K+W + L + T + + + +
Sbjct: 255 SASADKTIKIWNVA--------------------TLKVEKTIPVGTRIEDQQLGIIWTKQ 294
Query: 1328 LLAVSLLDTTVKIFFLD 1344
L + + +
Sbjct: 295 ALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.7 bits (145), Expect = 6e-10
Identities = 25/212 (11%), Positives = 57/212 (26%), Gaps = 10/212 (4%)
Query: 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMD-LKFSTDG 417
G + + + + IA+ G R+ F + M+ + F
Sbjct: 99 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR 158
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+D + K G T L AS D T+ +++
Sbjct: 159 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 218
Query: 478 RKKNQAVSMNNTYQVTSVAFNDTAEC--------VLTGGIDNDIKMWDLRTNSVVQKLRG 529
+ + + + D IK+W++ T V + +
Sbjct: 219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 278
Query: 530 HSD-TVTGLSLSPDGSYILSNAMDNTVRIWDI 560
+ L + ++S + + + +
Sbjct: 279 GTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.3 bits (144), Expect = 8e-10
Identities = 31/318 (9%), Positives = 72/318 (22%), Gaps = 29/318 (9%)
Query: 888 VRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYA-LSVCFVPGDRHVLVGTKD 946
L + + + V SL+ S+ P + G
Sbjct: 20 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79
Query: 947 G--RLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLW 1004
G R+ + IP S + ++ + + + +
Sbjct: 80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 139
Query: 1005 QLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTV 1064
+ K + E
Sbjct: 140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK------------------- 180
Query: 1065 KIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE 1124
F + ++ + + + + D +AH
Sbjct: 181 --FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 238
Query: 1125 DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS 1184
SV G+T+ P + S D +K W+ + T+ G ++ L + +
Sbjct: 239 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-----GTRIEDQQLGIIWTK 293
Query: 1185 TLIATGSGDRTVKVWGLD 1202
+ + S + + +
Sbjct: 294 QALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.4 bits (139), Expect = 4e-09
Identities = 33/318 (10%), Positives = 79/318 (24%), Gaps = 27/318 (8%)
Query: 74 EKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLA 133
+ L ++ S+ T + + +T H TV + P G+ A
Sbjct: 16 ARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 74
Query: 134 TGSKDTDIVLWDVVAE--CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDAD 191
+G ++ +WD + G + DI + S+ V ++ F ++ D
Sbjct: 75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134
Query: 192 TGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLN 251
TG + + V + I +D + + +
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194
Query: 252 QLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDT 311
+ + ++ + VF +
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVD-----GTKTGVFEDDSLKNVAHSGSVFGLTWSPD 249
Query: 312 TQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYH 371
++ + S + + +++ + + G E
Sbjct: 250 GTKIASASADKT---IKIWNVATLKVEKT----------------IPVGTRIEDQQLGII 290
Query: 372 PDGQYIASSGYDRQIFIW 389
Q + S + I
Sbjct: 291 WTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.9 bits (130), Expect = 4e-08
Identities = 40/264 (15%), Positives = 77/264 (29%), Gaps = 5/264 (1%)
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ L + I +G +V + + H T P +Y +
Sbjct: 20 AVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 1235 DGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETK 1294
G V+ WD + P P++ + + + + +
Sbjct: 79 HGNVRIWD-TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 1295 DVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG 1354
+++ K S D+ + K F + KF S+
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197
Query: 1355 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF 1414
+ L D T++ D T + D +AH SV G+T+ P
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254
Query: 1415 TTSKDGRVKQWDADNFERIVTLHI 1438
+ S D +K W+ + T+ +
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPV 278
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.6 bits (124), Expect = 2e-07
Identities = 10/100 (10%), Positives = 22/100 (22%)
Query: 598 AGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCD 657
VY + H+ + P S + + ++
Sbjct: 33 QYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92
Query: 658 KAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFC 697
+ + G V + D + + G F
Sbjct: 93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 7e-06
Identities = 10/143 (6%), Positives = 29/143 (20%), Gaps = 3/143 (2%)
Query: 1316 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS 1375
+ +P + T+V + + H S A+G
Sbjct: 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 1376 GDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1433
V++W V +++ ++ +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 1434 VTLHICSCSLNSPMNSVHLNSCP 1456
++ + +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPF 160
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.0 bits (107), Expect = 3e-05
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 116 HKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHF 175
H ++ + + P G ++A+ S D I +W+V + + +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII-WTKQA 295
Query: 176 VVSSAKDTFVKIWDAD 191
+VS + + F+ + +
Sbjct: 296 LVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (100), Expect = 3e-04
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 76 HEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKS-AITVIQYDPLGHRLAT 134
V L+ + D +++A A + ++K +++ T V T + L +
Sbjct: 239 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 298
Query: 135 GSKDTDIVLWD 145
S + I +
Sbjct: 299 ISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.4 bits (95), Expect = 0.001
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 868 GSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDTGS 926
G+ V S+ H V L +S D + SA A +KIWN +L +TI G+
Sbjct: 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 280
Query: 927 YALS--VCFVPGDRHVLVGTKDGRLLIVDI 954
+ + + ++ + +G + V+
Sbjct: 281 RIEDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.1 bits (216), Expect = 3e-19
Identities = 35/300 (11%), Positives = 76/300 (25%), Gaps = 25/300 (8%)
Query: 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKF 413
+ + GH I +P + S YD +I WS + H+ ++ L
Sbjct: 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDN 54
Query: 414 STDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVK 473
S + D + + + A ++D +
Sbjct: 55 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFT----------AVLTNDDDLL 104
Query: 474 VWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDT 533
+ + S+ ++V+ + V +
Sbjct: 105 ILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK 164
Query: 534 VTGLSLSPDG---SYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWS 590
+ +S+SP + +
Sbjct: 165 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 224
Query: 591 VSGLYVTAGSADKCVYIWDT-TTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
+ V GS D ++I+ +I L H VN++ + ++ S+ +D I
Sbjct: 225 IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIKR 283
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.2 bits (185), Expect = 4e-15
Identities = 44/325 (13%), Positives = 94/325 (28%), Gaps = 44/325 (13%)
Query: 109 VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFM 168
V+ T +GH IT + +PL +GS D I+ W H +I +
Sbjct: 5 VLKTISGHNKGITALTVNPL----ISGSYDGRIMEWSSS-----SMHQDHSNLIVSLDN- 54
Query: 169 SQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELK 228
S A++ WD T ++ + + ++D L
Sbjct: 55 ---------SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 105
Query: 229 VWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQV 288
+ + S + + ++ + + +
Sbjct: 106 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 165
Query: 289 FRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRT 348
+++ S + D + Y +Q + R
Sbjct: 166 SYISISPSETYIAAGDV------------------------MGKILLYDLQSREVKTSRW 201
Query: 349 SNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAV 408
+ + I + E ++ + +A+ D IFI+SV + I ++ H V
Sbjct: 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 261
Query: 409 MDLKFSTDGCHIFTCSTDQTLAVWD 433
+L + T + + D + W+
Sbjct: 262 NNLLWETPS-TLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.5 bits (178), Expect = 3e-14
Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 47/326 (14%)
Query: 152 LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCV 211
L +SGH IT + + ++S + D + W + + H + +
Sbjct: 6 LKTISGHNKGITALTV------NPLISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDN 54
Query: 212 MREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQI 271
+ S S D LKV + + +L+ D+ L + I
Sbjct: 55 S-KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113
Query: 272 INELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYD 331
I ++ S G L +A+ + ++ + +L+T
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR----------- 162
Query: 332 REKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSV 391
A + E + + G+ + R++
Sbjct: 163 ---------------------AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW 201
Query: 392 YGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK-GQRIKKMKGHSTFV 450
I +S + + + T S D + ++ +++ + IK + H V
Sbjct: 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 261
Query: 451 NSCDPVRRGQLLIASGSDDCTVKVWD 476
N+ L S D +K W+
Sbjct: 262 NNLLWETPSTL--VSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.5 bits (173), Expect = 2e-13
Identities = 34/310 (10%), Positives = 85/310 (27%), Gaps = 32/310 (10%)
Query: 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLS 1177
K++ H +T +T + + S DGR+ +W + + + H ++S
Sbjct: 7 KTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQ-----------DHSNLIVS 51
Query: 1178 LDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1237
LD S + D + + +A ++ +
Sbjct: 52 LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111
Query: 1238 VKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVS 1297
+ + N + +++ ++
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEG-----------NTIQVFKLSDLEVSFDLKTP 160
Query: 1298 RSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL 1357
K + + + L + + +
Sbjct: 161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG- 219
Query: 1358 PVLSLDMSYDSTLIATGSGDRTVKVWGL-DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT 1416
+ + + L+ATGS D + ++ + K+L AH+D V + + ++
Sbjct: 220 ---ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSS 275
Query: 1417 SKDGRVKQWD 1426
D +K+W+
Sbjct: 276 GADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.6 bits (168), Expect = 6e-13
Identities = 33/308 (10%), Positives = 80/308 (25%), Gaps = 32/308 (10%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
++ GH + +L ++ + +GS D + W H + + +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKAQ 58
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
Y + D + + G + T
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL-------------------TN 99
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNP 1256
L ++ + + V + + + + V+
Sbjct: 100 DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT 159
Query: 1257 NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1316
+ ++ ++ + + + + + + +
Sbjct: 160 PLRAK--PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 217
Query: 1317 VLCARVSPDSKLLAVSLLDTTVKIFFLDTF-KFFISLYGHKLPVLSLDMSYDSTLIATGS 1375
+ L+A LDT + I+ + K +L HK V +L STL+ +
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV-SSG 276
Query: 1376 GDRTVKVW 1383
D +K W
Sbjct: 277 ADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.6 bits (155), Expect = 2e-11
Identities = 42/300 (14%), Positives = 98/300 (32%), Gaps = 27/300 (9%)
Query: 955 GAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELV----- 1009
G E+L+ I H++ + ++ NP +++G D + W +
Sbjct: 1 GHDEVLKTISGHNKGITALT-----VNP---------LISGSYDGRIMEWSSSSMHQDHS 46
Query: 1010 -SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFF 1068
+ + + ++ S +L K E S ++ L + +
Sbjct: 47 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLIL 106
Query: 1069 LDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT 1128
I P ++ +S + + G+ D +
Sbjct: 107 QSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 166
Query: 1129 GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP-----VLSLDMSYD 1183
++ P Y G++ +D + E + F + + + + + +
Sbjct: 167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226
Query: 1184 STLIATGSGDRTVKVWGL-DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1242
L+ATGS D + ++ + K+L AH+D V + + ++ D +K+W+
Sbjct: 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.2 bits (154), Expect = 4e-11
Identities = 26/204 (12%), Positives = 62/204 (30%), Gaps = 10/204 (4%)
Query: 366 FCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST 425
+ + DG + D + + S G+ ++ AV + +
Sbjct: 84 KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI 143
Query: 426 DQTLAVWDLEKGQRIKKMKGHSTFV--------NSCDPVRRGQLLIASGSDDCTVKVWDP 477
++ +++ + V LL S + W
Sbjct: 144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF 203
Query: 478 RKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNS-VVQKLRGHSDTVTG 536
R + + + V TG +D +I ++ ++ +++ L H D V
Sbjct: 204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN 263
Query: 537 LSLSPDGSYILSNAMDNTVRIWDI 560
L ++S+ D ++ W++
Sbjct: 264 LLWETPS-TLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.7 bits (137), Expect = 5e-09
Identities = 37/285 (12%), Positives = 89/285 (31%), Gaps = 23/285 (8%)
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
GH+ + AL + L+S ++ W+ S+ + + +S+ +
Sbjct: 10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS----NLIVSLDNSKAQEYS 61
Query: 941 LVGTKDGRLLIVDIGAGEILEDIPAHSQELWS-VAMLPDQFNPNVYLPLQIQVVTGGGDK 999
+ D + + A + + D + + + +
Sbjct: 62 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 121
Query: 1000 SVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL 1059
L V +E L + L + +SP +A
Sbjct: 122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD 181
Query: 1060 LDTTVKIFFLDTFKFFISLYGHKLP-----------VLSLDMSYDSTLIATGSGDRTVKV 1108
+ + ++ L + + S + + + + + L+ATGS D + +
Sbjct: 182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 241
Query: 1109 WGL-DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152
+ + K+L AH+D V + + ++ D +K+W+
Sbjct: 242 YSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.9 bits (122), Expect = 4e-07
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 167 FMSQPGHHFVVSSAKDTFVKIWDADT-GDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225
+ V + + DT + I+ K + AH V + S L+S DA
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTLVSSGADA 279
Query: 226 ELKVWNV 232
+K WNV
Sbjct: 280 CIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 6e-06
Identities = 10/101 (9%), Positives = 27/101 (26%), Gaps = 9/101 (8%)
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1410
++ GH + +L ++ + +GS D + W H + + +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKAQ 58
Query: 1411 HYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNSVH 1451
Y + D + + + +
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN 99
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (105), Expect = 6e-05
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 79 CQLSPNHDSSQLAVAYTNGSLKTFSLDTT-DVISTFTGHKSAITVIQYDPLGHRLATGSK 137
+ +A + ++ +S+ +I HK + + ++ L +
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGA 277
Query: 138 DTDIVLWDVV 147
D I W+VV
Sbjct: 278 DACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 0.001
Identities = 35/346 (10%), Positives = 84/346 (24%), Gaps = 63/346 (18%)
Query: 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSV 626
+ +K +SGH K + + + +GS D + W +++ H+ +
Sbjct: 3 DEVLKTISGHN----KGITALTVN----PLISGSYDGRIMEWSSSSM-----HQDHSNLI 49
Query: 627 NDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHG 686
+ S + H + G
Sbjct: 50 VSLDN----------SKAQEYSSISWDDTLKV-------NGITKHEFGSQPKVASANNDG 92
Query: 687 NDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDK 746
V+ +S T + +L S A + +V + + +
Sbjct: 93 FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE 152
Query: 747 HRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDD 806
L + E+ + K+ + + +E + +
Sbjct: 153 VSFDLKTPLRAKPSYISISP--SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA 210
Query: 807 TEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSL 866
+ + + T S I V
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM---------------------- 248
Query: 867 GGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWN 912
+ +++++ H V L + + + + S + +K WN
Sbjct: 249 -------KIIKALN--AHKDGVNNLLWETPSTLVSSGADACIKRWN 285
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.5 bits (212), Expect = 2e-18
Identities = 38/287 (13%), Positives = 92/287 (32%), Gaps = 25/287 (8%)
Query: 343 KDVGRTSNLFAPIMLLEGHGGE-IFCSKYHP--DGQYIASSGYDRQIFIWSVYGECENI- 398
+ + + P++ GHG + K+ P QY+ S ++ +W + E+
Sbjct: 43 RCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 102
Query: 399 ------GVMSGHTGAVMDLKFSTDGCHI--FTCSTDQTLAVWDLEKGQRIKKMKGHSTFV 450
G + D+ + +G + D + G + ++ GHS +
Sbjct: 103 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRI 162
Query: 451 NSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVT--------SVAFNDTAE 502
N+C + + + DD +V + + S ++ S +
Sbjct: 163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 222
Query: 503 CVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562
V + + ++ + D + D T+R+WD+
Sbjct: 223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT- 281
Query: 563 YVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWD 609
+CV+ + + + + +G ++ S D + ++
Sbjct: 282 ---TSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS-LSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.6 bits (194), Expect = 6e-16
Identities = 34/305 (11%), Positives = 77/305 (25%), Gaps = 18/305 (5%)
Query: 363 GEIFCSKYHPDGQYIAS-SGYDRQIFIWSVY-GECENIGVMSGH-TGAVMDLKFS--TDG 417
Y P IA G + + + +GH + V +KFS
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKM--------KGHSTFVNSC--DPVRRGQLLIASGS 467
++ + + VW + + + + ++ D R ++ G
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 468 DDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL 527
D+ V + + ++ ++ + + D+ ++
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 528 RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRC 587
+ S + I + + +
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 588 AWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQ---FHPKEPIIMSASSD 644
+ AD + +WD TT + K + + Q I+S S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 645 KTIYL 649
T+
Sbjct: 318 GTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.0 bits (164), Expect = 3e-12
Identities = 42/325 (12%), Positives = 81/325 (24%), Gaps = 21/325 (6%)
Query: 116 HKSAITVIQYDPLGHRLATGS-KDTDIVLWDVVAECG--LHRLSGHKG-VITDIRFMSQP 171
++ T + YDP + +A K + D + + +GH V+T ++F
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
G ++ S + V +W ++ ++ + V V
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 232 VRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRL 291
RD + S + T VF
Sbjct: 136 GRDNFGVFISWDSGNSLGEVS-------GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188
Query: 292 ALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNL 351
+ G + V + + + + +
Sbjct: 189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 248
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+ D Q A+ G D I +W V +C +
Sbjct: 249 EPVQG--------GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 411 LKFS-TDGCHIFTCSTDQTLAVWDL 434
+ T I + S D TL ++L
Sbjct: 301 VGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.9 bits (161), Expect = 7e-12
Identities = 45/311 (14%), Positives = 88/311 (28%), Gaps = 17/311 (5%)
Query: 1127 VTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISLYGH-KLPVLSLDMS--Y 1182
T +++ P T+ K V+ D + + + GH V ++ S
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGD----SKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 1183 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1242
S + +G V VWG + S+ + S V P + + +GR
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW--DFEGRRLCVV 133
Query: 1243 ADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKV 1302
+ + + ++ + + + S+ D
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193
Query: 1303 LSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSL 1362
S K V SPDS +++ F F+ +
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253
Query: 1363 DM----SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT---FVPKTHYFFT 1415
+ DS AT D T++VW + C + + + +
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313
Query: 1416 TSKDGRVKQWD 1426
S DG + ++
Sbjct: 314 LSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.5 bits (147), Expect = 4e-10
Identities = 40/315 (12%), Positives = 80/315 (25%), Gaps = 23/315 (7%)
Query: 1085 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA-----HEDSVTGVTFVPKT--H 1137
L + IA G V LD GD + VT V F P
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAF-VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78
Query: 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLY--GHKLPVLSLDMSYDSTLIATGSG--D 1193
Y + + G+V W + ++ + P+ + ++ + D
Sbjct: 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138
Query: 1194 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1253
D G+ + H + T D + +
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198
Query: 1254 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1313
+ V + ++ + + + +
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI--- 255
Query: 1314 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY---DSTL 1370
A DS+ A D T++++ + T K K + + + +
Sbjct: 256 -----FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 310
Query: 1371 IATGSGDRTVKVWGL 1385
I + S D T+ + L
Sbjct: 311 IISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.6 bits (137), Expect = 8e-09
Identities = 36/324 (11%), Positives = 82/324 (25%), Gaps = 43/324 (13%)
Query: 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLD----TFKFFISLYGH-KLPVLSLDMS--YDS 1094
P + +A + + LD + GH V ++ S S
Sbjct: 19 FTTHLSYDPTTNAIAYPCGKSAF-VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 1095 TLIATGSGDRTVKVWGLDYGDCHKSLL--------AHEDSVTGVTFVPKTHYFFTTSKDG 1146
+ +G V VWG + S+ ++ +++ + +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 1147 RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1206
L S + + +
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQI-- 1264
++ V V F P + F T R + + + I
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 1265 -------QVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV 1317
+ T G D ++++W + + K + +L Q
Sbjct: 258 LSWLDSQKFATVGADATIRVWDV-----------------TTSKCVQKWTLDKQQLGNQQ 300
Query: 1318 LCARVSPDSKLLAVSLLDTTVKIF 1341
+ + + +++++S LD T+ +
Sbjct: 301 VGVVATGNGRIISLS-LDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 1e-07
Identities = 26/262 (9%), Positives = 62/262 (23%), Gaps = 22/262 (8%)
Query: 1041 EQVLCARVSP--DSKLLAVSLLDTTVKIFFLDTFKFFISLY--------GHKLPVLSLDM 1090
V + SP S+ L V ++ K S+ P+ +
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123
Query: 1091 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150
++ + R + + + S K + G
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS 183
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW----GLDYGDC 1206
+ + V ++ S DS G ++
Sbjct: 184 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243
Query: 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQI-- 1264
+ + F T D ++ WD + + + Q+
Sbjct: 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303
Query: 1265 ------QVVTGGGDKSVKLWQL 1280
++++ D ++ ++L
Sbjct: 304 VATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 1e-07
Identities = 35/328 (10%), Positives = 78/328 (23%), Gaps = 32/328 (9%)
Query: 926 SYALSVCFVPGDRHVLVGTKDG---RLLIVDIGAGEILEDIPAH-SQELWSVAMLPDQFN 981
++ + + P + R L + H S + +V P + +
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 982 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1041
+ +G V +W + + K +
Sbjct: 78 --------QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-------------G 116
Query: 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFF----ISLYGHKLPVLSLDMSYDSTLI 1097
+ + + L V F+ +S + ++ L S +
Sbjct: 117 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM 176
Query: 1098 ATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1157
G V G + H+ G ++ + +
Sbjct: 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236
Query: 1158 RIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1217
L + + DS AT D T++VW + C + + +
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL 296
Query: 1218 TGVT---FVPKTHYFFTTSKDGRVKQWD 1242
+ S DG + ++
Sbjct: 297 GNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 4e-04
Identities = 19/157 (12%), Positives = 42/157 (26%), Gaps = 18/157 (11%)
Query: 1316 QVLCARVSPDSKLLAVSLLDTTVKIFFLD----TFKFFISLYGH-KLPVLSLDMS--YDS 1368
P + +A + + LD + GH V ++ S S
Sbjct: 19 FTTHLSYDPTTNAIAYPCGKSAF-VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 1369 TLIATGSGDRTVKVWGLDYGDCHKSLL--------AHEDSVTGVTFVPK--THYFFTTSK 1418
+ +G V VWG + S+ ++ +++ + +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 1419 DGRVKQWDADNFERIVTLHICSCSLNSPMNSVHLNSC 1455
D D+ + + S +N+
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (97), Expect = 5e-04
Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 76 HEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPL---GHRL 132
DS + A + +++ + + T+ + +T K + Q + R+
Sbjct: 252 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
Query: 133 ATGSKDTDIVLWDV 146
+ S D + +++
Sbjct: 312 ISLSLDGTLNFYEL 325
|
| >d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Major mite fecal allergen der p 1 species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]
Score = 85.1 bits (209), Expect = 5e-18
Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 24/238 (10%)
Query: 2166 HSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQ 2225
++ + P D R+ + + QG C S W
Sbjct: 79 NACSINGNAPAEIDLRQMRT-----VTPIRMQGGCGSAW------AFSGVAATESAYLAY 127
Query: 2226 GQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCM 2285
+ + + S C + + + + +
Sbjct: 128 RDQSLDLAEQELVD---CASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPN 184
Query: 2286 GGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIRLY 2345
+ I + + A ++G + + +
Sbjct: 185 AQRFGISNYCQI--------YPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII 236
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403
+ P Y H+V I+G+ ++Q YW+ NS++ WG+ G +++ IE+
Sbjct: 237 QRDNGYQPNY-HAVNIVGYS-NAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEE 292
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 85.9 bits (211), Expect = 5e-18
Identities = 35/350 (10%), Positives = 81/350 (23%), Gaps = 33/350 (9%)
Query: 1093 DSTLIATGSGDRTVKVWGLDYGDCHKSL-LAHEDSVTGVTFVPKTHYFF-TTSKDGRVKQ 1150
+ + + V + +KS + + P + + G +
Sbjct: 7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1210
D D + + + S +S D + +
Sbjct: 67 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126
Query: 1211 LAHED----SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQV 1266
+ D +P+ Y + DG + D + ++ V
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIY----------------KMDV 170
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
TG V++ + + + AR D
Sbjct: 171 KTGK----------YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 220
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
+ A + L L T K + + + + + L
Sbjct: 221 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLK 280
Query: 1387 YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
K+ + + V F K + + ++ D E++ +
Sbjct: 281 QRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 77.1 bits (188), Expect = 4e-15
Identities = 33/363 (9%), Positives = 96/363 (26%), Gaps = 37/363 (10%)
Query: 171 PGHHFVVSSAKDTFVKIWDADTGDCFKTMA-AHLTEVWGVCVMREDSYL-ISGSNDAELK 228
GH +++ + + + D + +K+ + ++ + ++ ++
Sbjct: 6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65
Query: 229 VWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQV 288
++ + + S ++ S I + K + ++
Sbjct: 66 GIDLDTCKNTFHANL------------SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 113
Query: 289 FRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRT 348
+ E + +V + + +
Sbjct: 114 NDHYVVKPPRLEVFST-----ADGLEAKPVRTFPMPRQVYLMRAADDGS-------LYVA 161
Query: 349 SNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAV 408
+ + G + Y + S E + ++
Sbjct: 162 GPDIYKMDVKTGKYTVALPLRNWNRKGYS-APDVLYFWPHQSPRHEFSMLYTIA------ 214
Query: 409 MDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSD 468
+F D T DL+ G+ + T + G
Sbjct: 215 ---RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL 271
Query: 469 DCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR 528
+ + +D +++ + N + VAF+ + + GG ND+ +++ T V+ ++
Sbjct: 272 N-RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
Query: 529 GHS 531
Sbjct: 331 LPG 333
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 76.7 bits (187), Expect = 6e-15
Identities = 35/366 (9%), Positives = 84/366 (22%), Gaps = 42/366 (11%)
Query: 891 LAFSSDNLALVSACAS-QVKIWNRPSLSCLRT--IDTGSYALSVCFVPGDRHVLV-GTKD 946
A + + ++ + + + S + ++ + + P +R V
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 947 GRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQL 1006
G + +D+ + S + G + +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSV-----------PGEVGRSMYSFAISPDGKEVYATVNPT 110
Query: 1007 ELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKI 1066
+ ++ + +V + L RT + QV R + D L +
Sbjct: 111 QRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYK 167
Query: 1067 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1126
+ T K+ ++L S +
Sbjct: 168 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY---------------- 211
Query: 1127 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTL 1186
T F T D + + S
Sbjct: 212 -TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-----LTELYFTGLRSPKDPN 265
Query: 1187 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1246
G + + + L K+ + + V F K + + ++ D
Sbjct: 266 QIYGVLN-RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323
Query: 1247 ERIVTL 1252
E++ +
Sbjct: 324 EKVKNI 329
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 68.2 bits (165), Expect = 3e-12
Identities = 36/356 (10%), Positives = 84/356 (23%), Gaps = 37/356 (10%)
Query: 208 GVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267
G + Y+I + L V +V + + +++ D V
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKS-CVMPDKFGPGTAMMAPDNRTAYVL-- 57
Query: 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEV 327
+ L C ++ N+ + + S K
Sbjct: 58 ------------NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA 105
Query: 328 TVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIF 387
T Q++ +G + + P Y+ + D ++
Sbjct: 106 T------VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 159
Query: 388 IWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHS 447
+ +I M TG + + L W + + M
Sbjct: 160 VAG-----PDIYKMDVKTGKYTVALPLRNWNRKGYSA-PDVLYFWPHQSPRHEFSMLYTI 213
Query: 448 TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN--TYQVTSVAFNDTAECVL 505
A+ D + T + + +
Sbjct: 214 ARFKDDKQD------PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI 267
Query: 506 TGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561
G N + +DL+ +++ T ++ G + N + +++
Sbjct: 268 YGV-LNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 66.7 bits (161), Expect = 1e-11
Identities = 30/342 (8%), Positives = 76/342 (22%), Gaps = 39/342 (11%)
Query: 129 GHRLATGSKDTDIVLWD-----VVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDT 183
+ + ++ + D V C + G + M+ V +
Sbjct: 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAM-----MAPDNRTAYVLNNHYG 62
Query: 184 FVKIWDADTGDCFK------TMAAHLTEVWGVCVMREDSYLISGSNDAE----------- 226
+ D DT ++ + + + + N +
Sbjct: 63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122
Query: 227 -LKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKW 285
L+V++ D + + Q+ + ++D ++ + +
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLR 182
Query: 286 LQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDV 345
+ + + R K D T
Sbjct: 183 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL--------S 234
Query: 346 GRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHT 405
F P +R + +
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKA---ANLD 291
Query: 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHS 447
+ F G ++ T LAV++ + +++K +K
Sbjct: 292 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 66.3 bits (160), Expect = 1e-11
Identities = 28/322 (8%), Positives = 71/322 (22%), Gaps = 52/322 (16%)
Query: 371 HPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIF-TCSTDQTL 429
+Y+ + Y + + V + + + D + + +
Sbjct: 5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 64
Query: 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRR-----------------GQLLIASGSDDCTV 472
DL+ + S + +L +
Sbjct: 65 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL 124
Query: 473 KVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532
+V+ +A + V A+ DI D++T L +
Sbjct: 125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184
Query: 533 -------------------------TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE 567
T D + + D++ G+
Sbjct: 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK---TGK 241
Query: 568 RCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVN 627
+ + + S G + + +D R++ + +
Sbjct: 242 THTQEFADLTELY----FTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAAN-LDHTYY 295
Query: 628 DVQFHPKEPIIMSASSDKTIYL 649
V F K + + + +
Sbjct: 296 CVAFDKKGDKLYLGGTFNDLAV 317
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 65.5 bits (158), Expect = 2e-11
Identities = 17/225 (7%), Positives = 49/225 (21%), Gaps = 19/225 (8%)
Query: 495 VAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR-GHSDTVTGLSLSPDGSYIL-SNAMD 552
A E ++ N++ + D+ +++V + ++PD N
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 553 NTVRIWDIRPYVPGERCVKVMSGHQH----------NFEKNLLRCAWSVSGLYVTAGSAD 602
+ D+ + K + L
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 603 KCVYIWDTTTRRIAYKLPGHNG--SVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAG 660
+ ++ T A + V ++ + ++ + + K
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMD-----VKTGKYT 176
Query: 661 SILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTR 705
L + + Y + + +
Sbjct: 177 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 221
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 60.9 bits (146), Expect = 7e-10
Identities = 28/294 (9%), Positives = 63/294 (21%), Gaps = 15/294 (5%)
Query: 883 GHHSEVRALAFSSDN-LALVSACAS-QVKIWNRPSLSCLRTI-------DTGSYALSVCF 933
+ DN A V + + + + G S
Sbjct: 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 96
Query: 934 VPGDRHVLVGTKDGRLLIVDIGAGE----ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQ 989
P + V + L + + +P Q
Sbjct: 97 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156
Query: 990 IQVVTGGGDKSVKLWQLELV-SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV 1048
V G + + + ++ + + + AR
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216
Query: 1049 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1108
D + A + L L T K + + + +
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAK 276
Query: 1109 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162
+ L K+ + + V F K + + ++ D E++ +
Sbjct: 277 YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 52.8 bits (125), Expect = 3e-07
Identities = 31/358 (8%), Positives = 81/358 (22%), Gaps = 36/358 (10%)
Query: 588 AWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP-GHNGSVNDVQFHP-KEPIIMSASSDK 645
A Y+ + +++ D + + P + +
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62
Query: 646 TIYL-----GESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTK- 699
IY ++ H + + G+ ++ +++ ++ Y
Sbjct: 63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122
Query: 700 -----DESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCH 754
+ K +R + D + + K+ L
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLR 182
Query: 755 GNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKP 814
+ + + K P
Sbjct: 183 NWNRKGYSAPDVLYF-------------------WPHQSPRHEFSMLYTIARFKDDKQDP 223
Query: 815 ELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVR 874
D++ ++ TGK + + + + L+ D ++
Sbjct: 224 ATADLLYGYLSVDLK--TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYD-LK 280
Query: 875 HLRSIHAQGHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSV 931
+ I A +AF L + ++N +L ++ I +S
Sbjct: 281 QRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMST 338
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 52.4 bits (124), Expect = 4e-07
Identities = 7/99 (7%), Positives = 27/99 (27%)
Query: 872 SVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSV 931
+ S + + +++ ++ ++ + V
Sbjct: 238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCV 297
Query: 932 CFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQEL 970
F + +G L + + E +++I ++
Sbjct: 298 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 50.1 bits (118), Expect = 2e-06
Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 6/142 (4%)
Query: 102 FSLDTTDVISTFTG---HKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGH 158
+ D + T+ ++ AT + D+ H
Sbjct: 190 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL-KTGKTHTQEFA 248
Query: 159 KGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYL 218
+ P + + + +D K + V ++ L
Sbjct: 249 DLTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKL 306
Query: 219 ISGSNDAELKVWNVRDRSDIDT 240
G +L V+N +
Sbjct: 307 YLGGTFNDLAVFNPDTLEKVKN 328
|
| >d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin L species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.5 bits (205), Expect = 2e-17
Identities = 52/304 (17%), Positives = 86/304 (28%), Gaps = 79/304 (25%)
Query: 2135 HSEKLSANE----DPEEFPNEDVFEHTFAEIPNIDHSNQTDEAIPETFDAREEWPQCKDV 2190
HS ++ N EEF P + D W + V
Sbjct: 54 HSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVD----WREKGYV 109
Query: 2191 IGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICI 2250
V +QG C SCW A SA + ++
Sbjct: 110 T-PVKNQGQCGSCW--------------------------------AFSATGALEGQMFR 136
Query: 2251 QSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTH 2310
K LS Q+L+ C GG A+ Y + G +D + +
Sbjct: 137 --KTGRLISLSEQNLVDCSGPQGNEG-------CNGGLMDYAFQYVQDNGGLDSEESYPY 187
Query: 2311 DVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYI-------------- 2356
+ + ++ + + +++ + G I+
Sbjct: 188 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY 247
Query: 2357 -----------HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
H V ++G+G S N YWL NS+ + WG G K+ + N C I
Sbjct: 248 FEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 307
Query: 2402 EDSV 2405
+
Sbjct: 308 ASAA 311
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 78.7 bits (192), Expect = 1e-15
Identities = 31/305 (10%), Positives = 78/305 (25%), Gaps = 31/305 (10%)
Query: 375 QYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMDLKFSTDGCHIF-TCSTDQTLAVW 432
YI + ++ + + + ++ M + G + T + ++L
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 433 DLEKGQRIKKMKGHSTFVNS----------------CDPVRRGQLLIASGSDDCTVKVWD 476
DL G+ + ++ + L V ++D
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 477 PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWD----LRTNSVVQKLRGHSD 532
++ + Q+T +A+ + G D + + + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR------ 586
L++ A DI P P +++ E +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 587 --CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSD 644
+ +V+ A A + +D ++P S V + +
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL 300
Query: 645 KTIYL 649
+
Sbjct: 301 GDLAA 305
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 77.5 bits (189), Expect = 2e-15
Identities = 32/321 (9%), Positives = 82/321 (25%), Gaps = 28/321 (8%)
Query: 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD-STLIATGSGDRTV 1196
Y ++ ++ D + I++ + ++ AT + ++
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKV----ITIADAGPTPMVPMVAPGGRIAYATVNKSESL 58
Query: 1197 KVWGLDYGDCHKSLLAHE-----DSVTGVTFVPKTHYFFTTSKDGRV------------K 1239
L G+ + S+ G P R+
Sbjct: 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118
Query: 1240 QWDADNFERIVTLHFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKD 1295
+DA+ R + + ++ G D V + + ++ +
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE 178
Query: 1296 VSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGH 1355
VL++ + D + T + L+T + +
Sbjct: 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238
Query: 1356 KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFT 1415
+ V + + ++ + L+ K + S V +
Sbjct: 239 -MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL 296
Query: 1416 TSKDGRVKQWDADNFERIVTL 1436
G + +DA+ E+ +
Sbjct: 297 GGALGDLAAYDAETLEKKGQV 317
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 75.6 bits (184), Expect = 1e-14
Identities = 34/375 (9%), Positives = 77/375 (20%), Gaps = 48/375 (12%)
Query: 175 FVVSSAKDTFVKIWDADTGDCFKTMAAHLT--EVWGVCVMREDSYL-ISGSNDAELKVWN 231
++++ A+ + + D + K + V + + L +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 232 VRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRL 291
+ + D + S + + K L+ +
Sbjct: 63 LVTGETLGRIDLS-------------TPEERVKSLFGAALSPDGKTLAIYESPVRLELTH 109
Query: 292 ALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNL 351
+ D +T + R+ + V
Sbjct: 110 FEVQPTRVALYD-----AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG 164
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDL 411
+ PD + + A
Sbjct: 165 TLVEDK--PIQSWEAETYAQPDVLAVWNQHESS-------------------GVMATPFY 203
Query: 412 KFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT 471
D + L DLE G+ + V +
Sbjct: 204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNV 261
Query: 472 VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR--- 528
++ +D K + + SV + V GG D+ +D T ++
Sbjct: 262 LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321
Query: 529 -GHSDTVTGLSLSPD 542
+ + D
Sbjct: 322 NASMSLASVRLFTRD 336
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 70.6 bits (171), Expect = 5e-13
Identities = 28/330 (8%), Positives = 83/330 (25%), Gaps = 24/330 (7%)
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHED--SVTGVTFVP-KTHYFFTTSKDGRVKQWD 1152
I + + V + K + + + P + T +K + + D
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL- 1211
E + + + +S D +A +++ + +L
Sbjct: 63 LVTGETLGR-IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 1212 ----------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLP 1261
+T + + + +D V +A +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 1262 LQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL--- 1318
+ +S + D + D + L + T ++ + +
Sbjct: 182 QPDVLAVWNQHESS--GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239
Query: 1319 ---CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS 1375
+ + ++ F L+ I S+++S D + + G
Sbjct: 240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNAS-IKRVPLPHSYYSVNVSTDGSTVWLGG 298
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1405
+ + + + + ++ +
Sbjct: 299 ALGDLAAYDAETLEKKGQVDLPGNASMSLA 328
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 69.1 bits (167), Expect = 2e-12
Identities = 31/333 (9%), Positives = 88/333 (26%), Gaps = 19/333 (5%)
Query: 900 LVSACAS-QVKIWNRPSLSCLRTI---DTGSYALSVCFVPGDRHVLV-GTKDGRLLIVDI 954
+++ ++ + + ++ + I D G + PG R K L+ +D+
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 955 GAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE 1014
GE L I + E ++ +P+ + ++ + + E
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 1015 ADEETKDVSRSHKVLSLL---HTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT 1071
K ++ L L + L L+ + + +
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183
Query: 1072 FKFFISLYG---HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT 1128
+ + D + + L+ G+ + V
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-MDVF 242
Query: 1129 GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIA 1188
+ ++ +D + I + S+++S D + +
Sbjct: 243 YFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-------PLPHSYYSVNVSTDGSTVW 295
Query: 1189 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1221
G + + + + + ++ +
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 66.4 bits (160), Expect = 1e-11
Identities = 27/333 (8%), Positives = 84/333 (25%), Gaps = 22/333 (6%)
Query: 132 LATGSKDTDIVLWDVVAECGLH--RLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
+ ++ +V+ D ++ + G + K + D
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMV-APGGRIAYATVNKSESLVKID 62
Query: 190 ADTGDCFKTMAAHLTEVWG-----VCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKD 244
TG+ + E + + L + L++ + +
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 245 KLSEQLNQLLLSEDEPDLTVSKIEVQII-----NELKNLSTGKKKWLQVFRLALCISSIT 299
+ + L ++ ++ + + G + + +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182
Query: 300 LNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLE 359
++ +++ + T + D + + + G + +
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-----AMREVR 237
Query: 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCH 419
F + +P + + F + + + + STDG
Sbjct: 238 IMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGST 293
Query: 420 IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNS 452
++ LA +D E ++ ++ S
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 66.0 bits (159), Expect = 2e-11
Identities = 26/260 (10%), Positives = 68/260 (26%), Gaps = 27/260 (10%)
Query: 324 NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYD 383
++ + D + ++ L G + + +
Sbjct: 55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114
Query: 384 RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM 443
++ ++ E + + L ++ DG ++ D V D E G ++
Sbjct: 115 TRVALYDA--ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLH--VMDPEAGTLVEDK 170
Query: 444 KGHSTFVNSCDPVRRGQLL----------------------IASGSDDCTVKVWDPRKKN 481
S + + + + D
Sbjct: 171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230
Query: 482 QAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP 541
A+ V + G N ++ +DL N+ ++++ + +++S
Sbjct: 231 MAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVST 289
Query: 542 DGSYILSNAMDNTVRIWDIR 561
DGS + + +D
Sbjct: 290 DGSTVWLGGALGDLAAYDAE 309
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 63.7 bits (153), Expect = 9e-11
Identities = 31/302 (10%), Positives = 76/302 (25%), Gaps = 11/302 (3%)
Query: 870 TDSVRHLRSIHAQGHHSEVRALAFSSD-NLALVSACAS-QVKIWNRPSLSCLRTID---- 923
T+ + + I + +A + S + + + L ID
Sbjct: 18 TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77
Query: 924 --TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIP-AHSQELWSVAMLPDQF 980
P + + + RL + + A + P Q
Sbjct: 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI 137
Query: 981 NPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1040
+ ++ G D V + + ++ + VL++ +
Sbjct: 138 TMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
D + T + L+T + + + V + +
Sbjct: 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-MDVFYFSTAVNPAKTRAF 256
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
++ + L+ K + S V + G + +DA+ E+
Sbjct: 257 GAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315
Query: 1161 TL 1162
+
Sbjct: 316 QV 317
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.0 bits (128), Expect = 1e-07
Identities = 30/383 (7%), Positives = 83/383 (21%), Gaps = 60/383 (15%)
Query: 595 YVTAGSADKCVYIWDTTTRRIAY--KLPGHNGSVNDVQFHP-KEPIIMSASSDKTIYLGE 651
Y+ A + + + DT + + + P + + +++ +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 652 SPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLR 711
L +G+ ++ ++ G D +
Sbjct: 63 -----------LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111
Query: 712 KLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDES 771
+ + ++ + + L G D V
Sbjct: 112 VQPTRVALYDA--ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE------- 162
Query: 772 STRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASK 831
+ ++ + E + V G K + +
Sbjct: 163 -AGTLVEDKPIQSW----EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217
Query: 832 TGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRAL 891
+ ++D+ G + + +
Sbjct: 218 RTGLLTMDLETG-------------------------------EMAMREVRIMDVFYFST 246
Query: 892 AFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLI 951
A + + ++ ++ + ++ + SV V +G G L
Sbjct: 247 AVNPAKTRAFG-AYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305
Query: 952 VDIGAGEILEDIPAHSQELWSVA 974
D E + S+A
Sbjct: 306 YDAETLEKKGQVDLPGNASMSLA 328
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (117), Expect = 2e-06
Identities = 15/175 (8%), Positives = 35/175 (20%), Gaps = 4/175 (2%)
Query: 66 HEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQY 125
L G V + + A
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205
Query: 126 DPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFV 185
+ T ++ D+ R + F + + +
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRI---MDVFYFSTAVNPAKTRAFGAYNVL 262
Query: 186 KIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDT 240
+ +D + K + + V V + S + G +L ++
Sbjct: 263 ESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (92), Expect = 0.003
Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 12/118 (10%)
Query: 545 YILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYV-TAGSADK 603
YIL+ A + + + D KV++ + + G + +
Sbjct: 3 YILAPARPDKLVVIDTEKM----AVDKVITIADAG--PTPMVPMVAPGGRIAYATVNKSE 56
Query: 604 CVYIWDTTTRRIAYKLPGHNG-----SVNDVQFHPKEPIIMSASSDKTIYLGESPLHC 656
+ D T ++ S+ P + S + L +
Sbjct: 57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 72.1 bits (176), Expect = 3e-13
Identities = 30/264 (11%), Positives = 68/264 (25%), Gaps = 26/264 (9%)
Query: 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ-----RIKKMKGHSTFVNSCDPVRRGQL 461
AV + S G ++F D + + DL + IK + S +
Sbjct: 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 462 LIASGSDDCTVKVWDP-RKKNQAVSMNNTYQVTSVAFN------------DTAECVLTGG 508
IA + D + + + ++ E ++
Sbjct: 123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182
Query: 509 IDNDIKMWDLRTNSVVQKLRGHSDTVT-GLSLSPDGSYIL-SNAMDNTVRIWDIRPYVPG 566
I + D + ++ ++ L Y + + N + + D +
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242
Query: 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSV 626
N + + ++ T+ D V + T P + +
Sbjct: 243 AIEDTGGQTPHPGRGANFVH--PTFGPVWATSHMGDDSVALIGTDPE----GHPDNAWKI 296
Query: 627 NDVQFHPKEPIIMSASSDKTIYLG 650
D + + + YL
Sbjct: 297 LDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 66.4 bits (161), Expect = 2e-11
Identities = 53/395 (13%), Positives = 112/395 (28%), Gaps = 46/395 (11%)
Query: 96 NGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG---- 151
G + T ++ + A+ + + G L +D + + D+ +
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99
Query: 152 -LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVC 210
+ S + + T + + + I D +T + K +
Sbjct: 100 EIKIGSEARSIETSKME-GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 158
Query: 211 VMRE-DSYLISGSNDAELKVWNVRDR---SDIDTEDKDKLS-------EQLNQLLLSEDE 259
E I S+ + NV++ +D D + L L+ L
Sbjct: 159 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 218
Query: 260 PDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFG-IDTTQELRTR 318
+ + + GK ++ N FG + T +
Sbjct: 219 RYFITAANARNKLVV-IDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD 277
Query: 319 SMKRKNDEVTVYDREKNYKVQKVQKDVGRTS--------NLFAPIMLLEGHGGEIFCSKY 370
S+ + + +K+ +G S + + + EI S
Sbjct: 278 SVALIGTD-PEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA 336
Query: 371 HPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHI-FTCST---- 425
D + + G D + + E I V+ +F+ DG + F+
Sbjct: 337 VFDIKAMTGDGSDPEFKTLPI-AEWAGIT---EGQPRVVQGEFNKDGTEVWFSVWNGKDQ 392
Query: 426 --------DQTLAVWDLEKGQRIKKMKGHSTFVNS 452
D+TL + + K +R+ G N+
Sbjct: 393 ESALVVVDDKTLELKHVIKDERLVTPTGKFNVYNT 427
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 63.7 bits (154), Expect = 1e-10
Identities = 45/405 (11%), Positives = 97/405 (23%), Gaps = 90/405 (22%)
Query: 890 ALAFSSDNLALVSACAS-QVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGR 948
+ +NL V+ + Q+ + + + +DTG R++ V +DG+
Sbjct: 25 MNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGK 84
Query: 949 LLIVDIGAGE--ILEDIPA---HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKL 1003
+ ++D+ E + +I S + + + +
Sbjct: 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED---------KYAIAGAYWPPQYVI 135
Query: 1004 WQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTT 1063
E + + + E +V S V++ +T
Sbjct: 136 MDGETLEPKKIQSTRGMTY----------DEQEYHPEPRVAAILASHYRPEFIVNVKETG 185
Query: 1064 VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK---SL 1120
K+ +DY D + +
Sbjct: 186 -------------------------------------------KILLVDYTDLNNLKTTE 202
Query: 1121 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM 1180
++ E + YF T + ++V + H +
Sbjct: 203 ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 262
Query: 1181 SYDSTLIATG-SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1239
+ AT GD +V + G + + + F +
Sbjct: 263 PTFGPVWATSHMGDDSVALI----GTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY 318
Query: 1240 QWDADNFERIVTLHFNPNVYLPLQIQV------VTGGGDKSVKLW 1278
+ V NP + + V G D K
Sbjct: 319 LY--------VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTL 355
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 60.2 bits (145), Expect = 2e-09
Identities = 31/350 (8%), Positives = 71/350 (20%), Gaps = 61/350 (17%)
Query: 1084 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1143
+ D+ ++ T + + + L +V Y F
Sbjct: 24 QMNDWDL--ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIG 80
Query: 1144 KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGLD 1202
+DG+V D E I + S ++ IA + +
Sbjct: 81 RDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 139
Query: 1203 YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPL 1262
+ K + + P+ I+ H+ P
Sbjct: 140 TLEPKKIQSTRGMTYDEQEYHPEPRVAA------------------ILASHYRPEFI--- 178
Query: 1263 QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV 1322
V + L D L T + E + +
Sbjct: 179 ----VNVKETGKILLVDYT--------DLNN------------LKTTEISAERFLHDGGL 214
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS-------YDSTLIATGS 1375
+ + + +++ + +
Sbjct: 215 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHM 274
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1425
GD +V + G + + + F + +
Sbjct: 275 GDDSVALI----GTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 54.8 bits (131), Expect = 8e-08
Identities = 46/396 (11%), Positives = 108/396 (27%), Gaps = 40/396 (10%)
Query: 175 FVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRD 234
F V+ + + D T + + V + YL D ++ + ++
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92
Query: 235 RSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALC 294
+ + SE + + + + + + + ++
Sbjct: 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ----- 147
Query: 295 ISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAP 354
S+ + D+ + + S R V V + K V ++L
Sbjct: 148 -STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD--------YTDLNNL 198
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE-----NIGVMSGHTGAVM 409
+ +Y ++ R + E + + G + H G
Sbjct: 199 KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 258
Query: 410 DLKFSTDGCHIFT-CSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSD 468
+ T G T D ++A+ G + ++ + P G L
Sbjct: 259 NFVHPTFGPVWATSHMGDDSVALI----GTDPEGHPDNAWKILDSFPALGGGSLFIKTHP 314
Query: 469 DCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR 528
+ ++ N ++ SVA D G D + K + + +
Sbjct: 315 NS-QYLYVDATLNPEAEISG-----SVAVFDIKAMT-GDGSDPEFKTLPIAEWA---GIT 364
Query: 529 GHSDTVTGLSLSPDGSYIL-----SNAMDNTVRIWD 559
V + DG+ + ++ + + D
Sbjct: 365 EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 53.3 bits (127), Expect = 3e-07
Identities = 21/195 (10%), Positives = 47/195 (24%), Gaps = 11/195 (5%)
Query: 459 GQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDL 518
L + D + + D ++ Y V + + + G D + M DL
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDL 90
Query: 519 RTNSV-----VQKLRGHSDTVTGLSLSPDGSYIL-SNAMDNTVRIWD---IRPYVPGERC 569
++ T + Y + I D + P
Sbjct: 91 WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 150
Query: 570 VKVMSGHQHNFEKNLLRCAWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSV-N 627
+++ E + S ++ + + D T +
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 210
Query: 628 DVQFHPKEPIIMSAS 642
D ++A+
Sbjct: 211 DGGLDGSHRYFITAA 225
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 45.9 bits (108), Expect = 5e-05
Identities = 23/191 (12%), Positives = 46/191 (24%), Gaps = 40/191 (20%)
Query: 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD 1325
VT + L D T ++ L V +R+S
Sbjct: 35 SVTLRDAGQIALI-----------DGSTYEI-----------KTVLDTGYAVHISRLSAS 72
Query: 1326 SKLLAVSLLDTTVKIFFLDTFK-----FFISLYGHKLPVLSLDMSYDS-TLIATGSGDRT 1379
+ L V D V + L + + S ++ IA
Sbjct: 73 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ 132
Query: 1380 VKVWGLDYGDCHKSLLAHEDSVTGVTFVP------------KTHYFFTTSKDGRVKQWDA 1427
+ + + K + + P + + + G++ D
Sbjct: 133 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192
Query: 1428 DNFERIVTLHI 1438
+ + T I
Sbjct: 193 TDLNNLKTTEI 203
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (103), Expect = 2e-04
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 1358 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1417
+ D+ ++ T + + + L +V Y F
Sbjct: 24 QMNDWDL--ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIG 80
Query: 1418 KDGRVKQWDADNFERIVTLHI 1438
+DG+V D E I
Sbjct: 81 RDGKVNMIDLWMKEPTTVAEI 101
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.9 bits (100), Expect = 4e-04
Identities = 22/177 (12%), Positives = 41/177 (23%), Gaps = 17/177 (9%)
Query: 76 HEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDV-----ISTFTGHKSAITVIQYDPLGH 130
+ V + L V +G + L + I + +S T
Sbjct: 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121
Query: 131 RL-ATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRF----------MSQPGHHFVVSS 179
A V+ D S + + S F+V+
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181
Query: 180 AKDTFVKIWDADTGDCFKTMAAHLTEV-WGVCVMREDSYLISGSNDAELKVWNVRDR 235
+ + + D + KT + Y I+ +N V
Sbjct: 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 71.0 bits (172), Expect = 5e-13
Identities = 40/382 (10%), Positives = 88/382 (23%), Gaps = 58/382 (15%)
Query: 1048 VSPDSKLLAVSL-----LDTTVKIFFLDTFKFFISLYGHKLPVLSLD--------MSYDS 1094
+PD++ + V+ T + + + + G LP + S
Sbjct: 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVF 68
Query: 1095 TLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1154
+ IA G V+V+ + + V P K Q+
Sbjct: 69 SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 128
Query: 1155 NFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL---- 1210
+V L +P D ++ +
Sbjct: 129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 188
Query: 1211 --LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVT 1268
E + + K + G++ Q D + +
Sbjct: 189 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT---------- 238
Query: 1269 GGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1328
+++ V + +
Sbjct: 239 -EAERADGWRPGGWQQVAYHRALDRIYLL-------------------------VDQRDE 272
Query: 1329 LAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--LIATGSGDRTVKVWGLD 1386
V + T + + S+++S D L A +GD+T+ + +
Sbjct: 273 WRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331
Query: 1387 YGDCHKSLLAHEDSVTGVTFVP 1408
G+ +S+ +T
Sbjct: 332 SGEELRSVNQLGHGPQVITTAD 353
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 68.7 bits (166), Expect = 3e-12
Identities = 35/380 (9%), Positives = 86/380 (22%), Gaps = 59/380 (15%)
Query: 177 VSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCV----------MREDSYLISGSNDAE 226
A T + D + G + + V S + G
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 227 LKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWL 286
++V++ + L P +T L+ K L
Sbjct: 80 VEVFDPVTLLPTAD-----IELPDAPRFLVGTYPWMTS-------------LTPDGKTLL 121
Query: 287 QVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVG 346
+D ++ T + ++ + KV
Sbjct: 122 FYQFSPAPAVG---VVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE 178
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHT 405
T + + I Y + Y +I + G+ + + + T
Sbjct: 179 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238
Query: 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIAS 465
A + G +++
Sbjct: 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW-----------------------RH 275
Query: 466 GSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVL--TGGIDNDIKMWDLRTNSV 523
+ V V D + + +++ S+ + + +L D + + D +
Sbjct: 276 KTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335
Query: 524 VQKLRGHSDTVTGLSLSPDG 543
++ + ++ + G
Sbjct: 336 LRSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 62.9 bits (151), Expect = 2e-10
Identities = 46/370 (12%), Positives = 88/370 (23%), Gaps = 53/370 (14%)
Query: 888 VRALAFSSDNL-ALVSACAS-----QVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
A + D V+ A Q + + + + ID G + + +
Sbjct: 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLPNPVVADDGSFIA 62
Query: 942 V----------GTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQ 991
G + + + D DI + V P
Sbjct: 63 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM------------ 110
Query: 992 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD 1051
K++ +Q D E K R V H D
Sbjct: 111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP---TAPDTFFMHCRD 167
Query: 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1111
L V+ T T F + + S + + + + L
Sbjct: 168 GSLAKVAF-GTEGTPEITHTEVFHP---EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL 223
Query: 1112 DYGDCHKSLL--AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLY 1169
GD A ++ + P + D + +
Sbjct: 224 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV 283
Query: 1170 -------------GHKLPVLSLDMSYDST--LIATGSGDRTVKVWGLDYGDCHKSLLAHE 1214
+ S+++S D L A +GD+T+ + + G+ +S+
Sbjct: 284 VLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 343
Query: 1215 DSVTGVTFVP 1224
+T
Sbjct: 344 HGPQVITTAD 353
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 61.7 bits (148), Expect = 4e-10
Identities = 20/218 (9%), Positives = 51/218 (23%), Gaps = 32/218 (14%)
Query: 348 TSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGA 407
L P + DG + +
Sbjct: 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFL 196
Query: 408 VMDLKFSTDGCHIFTCSTDQTLAVWDLEKG--QRIKKMKGHSTFVNSCDPVRRGQLLIAS 465
+ +S + + + DL G + + ++ + + G +A
Sbjct: 197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256
Query: 466 GSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQ 525
+ + ++ + + D +T +
Sbjct: 257 HRALDRIYLLVDQRDEWR----------------------HKTASRFVVVLDAKTGERLA 294
Query: 526 KLRGHSDTVTGLSLSPDGSYIL--SNAMDNTVRIWDIR 561
K + + +++S D +L + D T+ I D
Sbjct: 295 KFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHDAE 331
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (122), Expect = 6e-07
Identities = 20/214 (9%), Positives = 39/214 (18%), Gaps = 31/214 (14%)
Query: 506 TGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYIL----------SNAMDNTV 555
+ D V+ + G + ++ DGS+I + V
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYV 80
Query: 556 RIWDIRPYVPGERCVKVMSGHQHNF----EKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611
++D + F + L S V + D
Sbjct: 81 EVFDPV---TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE 137
Query: 612 TRRIAYKLPGH-------NGSVNDVQFHPKEPIIMSASSDKTIYL-----GESPLHCDKA 659
+ L + A + P
Sbjct: 138 GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI 197
Query: 660 GSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDL 693
S K + + + L
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL 231
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (122), Expect = 6e-07
Identities = 37/390 (9%), Positives = 77/390 (19%), Gaps = 56/390 (14%)
Query: 594 LYVT---AGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLG 650
+YV +A ++ D R+ + G G + + I AS+ +
Sbjct: 16 VYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GFLPNPVVADDGSFIAHASTVFSRIAR 73
Query: 651 ESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRL 710
+ + + L
Sbjct: 74 GER---TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 130
Query: 711 RKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDE 770
+ E D + C G+ V T +
Sbjct: 131 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM-------HCRDGSLAKVAFGTEGTPEI 183
Query: 771 SSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTAS 830
+ T + E ++
Sbjct: 184 THT-------------EVFHPEDEFLINHPAYSQKAGRLVWPTYT--------------- 215
Query: 831 KTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRA 890
+ I G+ + L + G + H +
Sbjct: 216 -----GKIHQIDLSSGDAK---FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL-- 265
Query: 891 LAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLV--GTKDGR 948
+ + V + + + L + G S+ ++ +L T D
Sbjct: 266 -LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKT 324
Query: 949 LLIVDIGAGEILEDIPAHSQELWSVAMLPD 978
L I D +GE L + +
Sbjct: 325 LYIHDAESGEELRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (117), Expect = 3e-06
Identities = 37/323 (11%), Positives = 80/323 (24%), Gaps = 17/323 (5%)
Query: 821 KRLPTIKTASKTGKIKSVD---VILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLR 877
+ + I + + D + R+A + +E+ T +
Sbjct: 39 RVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD 98
Query: 878 SIHAQGHHSEVRALAFSSDNLALVSACAS---QVKIWNRPSLSCLRTIDTGSYALSVCFV 934
+ + + + D L+ S V + + + R +D F
Sbjct: 99 A-PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY--HIFP 155
Query: 935 PGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVT 994
+ +DG L V G E N Y ++V
Sbjct: 156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED----EFLINHPAYSQKAGRLVW 211
Query: 995 GGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE-EQVLCARVSPDSK 1053
+ L E + + + +
Sbjct: 212 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 271
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--LIATGSGDRTVKVWGL 1111
V + T + + S+++S D L A +GD+T+ +
Sbjct: 272 EWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDA 330
Query: 1112 DYGDCHKSLLAHEDSVTGVTFVP 1134
+ G+ +S+ +T
Sbjct: 331 ESGEELRSVNQLGHGPQVITTAD 353
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.2 bits (100), Expect = 3e-04
Identities = 11/104 (10%), Positives = 27/104 (25%), Gaps = 1/104 (0%)
Query: 108 DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRF 167
H++ + + +V+ D L + + I
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI-DSINV 307
Query: 168 MSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCV 211
S D + I DA++G+ +++ +
Sbjct: 308 SQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITT 351
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 65.4 bits (158), Expect = 3e-11
Identities = 24/361 (6%), Positives = 63/361 (17%), Gaps = 73/361 (20%)
Query: 880 HAQGHHSEVRALAFSSDN-LALVSACAS-----QVKIWNRPSLSCLRTIDTGSYALSVCF 933
A + + + ++ A + + L +
Sbjct: 14 AAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-FLSLAVA 72
Query: 934 VPGDRHVLV----------GTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPN 983
+ G + + + D + DI +SV
Sbjct: 73 GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII--- 129
Query: 984 VYLPLQIQV-VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL--- 1039
+ G + + L + +
Sbjct: 130 GNCASSACLLFFLFGSSAAAGLSVP-----------------GASDDQLTKSASCFHIHP 172
Query: 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIAT 1099
S + L A L + + +Y L+
Sbjct: 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG----AQNCSSQAAQANYPGMLVWA 228
Query: 1100 GSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG------------- 1146
+ ++ +E F K+
Sbjct: 229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS 288
Query: 1147 ------RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDST--LIATGSGDRTVKV 1198
A + + + ++ + D A +G + +
Sbjct: 289 CLAAAENTSSVTASVGQTSGPI-------SNGHDSDAIIAAQDGASDNYANSAGTEVLDI 341
Query: 1199 W 1199
+
Sbjct: 342 Y 342
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 55.4 bits (132), Expect = 4e-08
Identities = 24/367 (6%), Positives = 58/367 (15%), Gaps = 78/367 (21%)
Query: 1046 ARVSPDSKLLAVSLL-----DTTVKIFFLDTFKFFISLYGHKLPVLSLD--------MSY 1092
S+ ++L T + G L + S
Sbjct: 25 HGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALAST 84
Query: 1093 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP--------KTHYFFTTSK 1144
A G V+V+ + + V F
Sbjct: 85 SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG 144
Query: 1145 DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1204
+ GS ++ L
Sbjct: 145 SSAAAGLSVPGASDDQLTKSASC---------FHIHPGAAATHYLGSCPASLAASDLAAA 195
Query: 1205 DCH------KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNV 1258
+ A S + + A +
Sbjct: 196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAID----- 250
Query: 1259 YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1318
+G + + ++V+ + D
Sbjct: 251 ------GNESGRKADNFRSAGFQMVAKLKNTDG--------------------------- 277
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--LIATGSG 1376
+ + + + ++ + D A +G
Sbjct: 278 -IMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNGHDSDAIIAAQDGASDNYANSAG 335
Query: 1377 DRTVKVW 1383
+ ++
Sbjct: 336 TEVLDIY 342
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.1 bits (126), Expect = 2e-07
Identities = 22/310 (7%), Positives = 64/310 (20%), Gaps = 40/310 (12%)
Query: 345 VGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGH 404
+G + F + + G + + A + ++ +
Sbjct: 59 LGHSLGAFLSLAVAGHSGSDFALASTS--FARSAKGKRTDYVEVFDPVTFLPIADIELPD 116
Query: 405 TGAVM------DLKFSTDGCHIFTCS-TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVR 457
+ + A + + K S F
Sbjct: 117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAA 176
Query: 458 RGQLLIASGSDDCTVKVWD-------PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID 510
GS ++ D + + N V
Sbjct: 177 TH----YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASS 232
Query: 511 NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCV 570
++ + G+ + G +++ + + V R
Sbjct: 233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL---TVEHSRSC 289
Query: 571 KVMSGHQHNFEKNLLRC-------------AWSVSG---LYVTAGSADKCVYIWDTTTRR 614
+ + + ++ + + G Y + + + I+D + +
Sbjct: 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN-SAGTEVLDIYDAASDQ 348
Query: 615 IAYKLPGHNG 624
+ G
Sbjct: 349 DQSSVELDKG 358
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.7 bits (125), Expect = 3e-07
Identities = 11/191 (5%), Positives = 44/191 (23%), Gaps = 26/191 (13%)
Query: 372 PDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431
AS V + + + + G ++ ++
Sbjct: 183 CPASLAASDLAAAPAAAGIVGAQ-----CTGAQNCSSQAAQANYPGMLVWAVASSILQGD 237
Query: 432 WDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIA------------------SGSDDCTVK 473
+ G+ + + + G ++A +
Sbjct: 238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297
Query: 474 VWDPRKKNQAVSMNNTYQVTSVAF--NDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS 531
+ ++N + ++ + ++ + ++D ++ +
Sbjct: 298 SVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357
Query: 532 DTVTGLSLSPD 542
LS+ +
Sbjct: 358 -GPESLSVQNE 367
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.1 bits (113), Expect = 9e-06
Identities = 17/239 (7%), Positives = 46/239 (19%), Gaps = 15/239 (6%)
Query: 876 LRSIHAQGHHSEVRALAFSSDN--LALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCF 933
L V + + + L +S + P S + + S
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--H 171
Query: 934 VPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVV 993
+G+ L D+ A A + + +V
Sbjct: 172 PGAAATHYLGSCPASLAASDLAAAPA-----AAGIVGAQCTGAQNCSSQAAQANYPGMLV 226
Query: 994 -TGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1052
++ D + + + +
Sbjct: 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM--ILTVE 284
Query: 1053 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--LIATGSGDRTVKVW 1109
+ + + ++ + D A +G + ++
Sbjct: 285 HSRSCLAAAENTSSVTASVGQT-SGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.9 bits (110), Expect = 2e-05
Identities = 8/197 (4%), Positives = 34/197 (17%), Gaps = 21/197 (10%)
Query: 510 DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYI----------LSNAMDNTVRIWD 559
+ + + G ++ GS + V ++D
Sbjct: 45 TTENWVSCAGCGVTLGHSLGA--FLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD 102
Query: 560 IRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYV-TAGSADKCVYIWDTTTRRIAYK 618
++P +++ + + + S +
Sbjct: 103 PVTFLPIAD-IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQL 161
Query: 619 LPGHNGSVNDVQFHPKEPIIMSASSDKTIYL----GESPLHCDKAGSILRSGKGRVHTMV 674
+ S ++ +
Sbjct: 162 TKSASCF---HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ 218
Query: 675 NDKHRQILCCHGNDNVV 691
+ ++ + +
Sbjct: 219 ANYPGMLVWAVASSILQ 235
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.0 bits (105), Expect = 9e-05
Identities = 9/162 (5%), Positives = 31/162 (19%), Gaps = 22/162 (13%)
Query: 337 KVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE 396
+ + ++ + G + +
Sbjct: 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP-AAGAT 244
Query: 397 NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ-------------------TLAVWDLEKG 437
+ G+ F + G + + + G
Sbjct: 245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304
Query: 438 QRIKKMKGHSTFVNSCDPVRRGQ-LLIASGSDDCTVKVWDPR 478
Q + ++ + G A+ + + ++D
Sbjct: 305 QTSGPISNGHD-SDAIIAAQDGASDNYANSAGTEVLDIYDAA 345
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.0 bits (92), Expect = 0.003
Identities = 14/145 (9%), Positives = 37/145 (25%), Gaps = 18/145 (12%)
Query: 73 GEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRL 132
+ N+ + ++ + + G++S + G ++
Sbjct: 209 AQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM 268
Query: 133 ATGSKDTDIVLWDVVAECGLHRLSG------------------HKGVITDIRFMSQPGHH 174
K+TD ++ V + + I
Sbjct: 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASD 328
Query: 175 FVVSSAKDTFVKIWDADTGDCFKTM 199
+SA + I+DA + ++
Sbjct: 329 NYANSAGTEVLDIYDAASDQDQSSV 353
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 62.7 bits (151), Expect = 3e-10
Identities = 43/355 (12%), Positives = 86/355 (24%), Gaps = 21/355 (5%)
Query: 1084 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1143
+ LD+ + T + + D K + +V Y
Sbjct: 24 QLNDLDL--PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIG 80
Query: 1144 KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1203
+D R+ D E I + + D IA + +
Sbjct: 81 RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 140
Query: 1204 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQ 1263
+ + + +V T+ P+ + + V L ++
Sbjct: 141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV 200
Query: 1264 IQVVTGGG--------DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1315
+ + + D + + +S V H
Sbjct: 201 TSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV 260
Query: 1316 QVLCARV--SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY------- 1366
V + ++SL+ T K +K L G L +
Sbjct: 261 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV 320
Query: 1367 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1421
D+T ++V V+ L D +L + + K +K G
Sbjct: 321 DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE-WADLGEGAKRVVQPEYNKRGD 374
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 60.4 bits (145), Expect = 1e-09
Identities = 52/407 (12%), Positives = 113/407 (27%), Gaps = 79/407 (19%)
Query: 96 NGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWD-------VVA 148
G + D+ ++ A+ + + G L +D I + D VA
Sbjct: 41 AGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 99
Query: 149 ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWG 208
E + + V + + + + I D +T + + ++ V
Sbjct: 100 E--IKIGIEARSVESSKFK-GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 156
Query: 209 VCVMREDS-YLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267
E I S++ + NV++ + L+ +D +LTV+ I
Sbjct: 157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKV-------------LLVNYKDIDNLTVTSI 203
Query: 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLN----IDDFAFGIDTTQELRTRSMKRK 323
+ + ++ + ++ I G + K
Sbjct: 204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPK 263
Query: 324 NDEVTVYDREKNYKV-QKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGY 382
V + + + + L+G GG K HP ++
Sbjct: 264 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY---- 319
Query: 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK 442
+D F+ D Q++AV+DL+ +
Sbjct: 320 --------------------------VDTTFNPDA------RISQSVAVFDLKNLDAKYQ 347
Query: 443 MKGHSTFVNSCDPVRR---------GQLLIAS----GSDDCTVKVWD 476
+ + + + + +R G + S +D + V D
Sbjct: 348 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 394
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 57.3 bits (137), Expect = 1e-08
Identities = 33/360 (9%), Positives = 84/360 (23%), Gaps = 45/360 (12%)
Query: 1109 WGL-DYGDCHKSLLAHEDSVTGVTFV--PKTHYFFTTSKDGRVKQWDADNFERIVTLHFF 1165
WG+ + + K L+ ED + T G++ D D+ + + +
Sbjct: 2 WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG 61
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH-----KSLLAHEDSVTGV 1220
+++ MS + D + + L + K + +
Sbjct: 62 YAVHI-------SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 114
Query: 1221 TFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQ 1279
+ Y + + D + E +
Sbjct: 115 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 174
Query: 1280 LELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVK 1339
E + +E + + L+ ++ + + + ++
Sbjct: 175 PEFIVNVKETGKVLLVNYKDIDNLT---VTSIGAAPFLADGGWDSSHRYFMTAANNSNKV 231
Query: 1340 IFFLDTFKFFISLY----------------GHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1383
+ +L PV S D ++ G+ + +
Sbjct: 232 AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 291
Query: 1384 GLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT-------SKDGRVKQWDADNFERIVTL 1436
L + PK+ + + V +D N + +
Sbjct: 292 A---WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV 348
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 55.3 bits (132), Expect = 6e-08
Identities = 30/258 (11%), Positives = 70/258 (27%), Gaps = 28/258 (10%)
Query: 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ-----RIKKMKGHSTFVNSCDPVRRGQL 461
AV + S G ++ D + + DL + IK + +S +
Sbjct: 63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY 122
Query: 462 LIASGSDDCTVKVWDPRKKNQAVSMNNTYQV-------------TSVAFNDTAECVLTGG 508
IA + D ++ +A ++ E ++
Sbjct: 123 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 182
Query: 509 IDNDIKMWDLRTNSVVQKLR-GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE 567
+ + + + + G + + Y ++ A ++
Sbjct: 183 ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS 242
Query: 568 RCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAY-------KLP 620
V V G + + ++ T+ D + + T + +L
Sbjct: 243 ALVDV--GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ 300
Query: 621 GHNGSVNDVQFHPKEPII 638
G G ++ HPK +
Sbjct: 301 GQGGGSLFIKTHPKSSHL 318
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 53.0 bits (126), Expect = 3e-07
Identities = 32/231 (13%), Positives = 57/231 (24%), Gaps = 22/231 (9%)
Query: 424 STDQTLAVWDL--EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN 481
+ W + + R KK +N D L + D + + D K
Sbjct: 3 GMPEMRESWKVLVKPEDRPKKQ------LNDLDL---PNLFSVTLRDAGQIALVDGDSKK 53
Query: 482 QAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV-----VQKLRGHSDTVTG 536
++ Y V + + +L G D I M DL ++ +
Sbjct: 54 IVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113
Query: 537 LSLSPDGSY-ILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS--- 592
+ Y I I D P + R A ++
Sbjct: 114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 173
Query: 593 --GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSA 641
V K + + + G + D + M+A
Sbjct: 174 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTA 224
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 51.1 bits (121), Expect = 1e-06
Identities = 52/378 (13%), Positives = 96/378 (25%), Gaps = 54/378 (14%)
Query: 889 RALAFSSDNLALVSACAS---QVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTK 945
+ D L S Q+ + + S ++ IDTG R++LV +
Sbjct: 22 KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR 81
Query: 946 DGRLLIVDIGAGEI-----LEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
D R+ ++D+ A E ++ S + + +
Sbjct: 82 DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED---------RYTIAGAYWPPQ 132
Query: 1001 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL 1060
+ E + + V T+T E +V S + V++
Sbjct: 133 FAIMDGETLEPKQIVSTRGMTV----------DTQTYHPEPRVAAIIASHEHPEFIVNVK 182
Query: 1061 DT--TVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118
+T + + + D ++ G + T + + K
Sbjct: 183 ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAV-----IDSK 237
Query: 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI------------VTLHFFI 1166
G T P F K G V I
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297
Query: 1167 SLYGHKLPVLSLDMSY-------DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1219
L G L + D+T ++V V+ L D +L +
Sbjct: 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE-WAD 356
Query: 1220 VTFVPKTHYFFTTSKDGR 1237
+ K +K G
Sbjct: 357 LGEGAKRVVQPEYNKRGD 374
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 50.0 bits (118), Expect = 2e-06
Identities = 31/309 (10%), Positives = 81/309 (26%), Gaps = 41/309 (13%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQY-IASSGYDRQIFIWSVYGECENIGVMSGHT 405
+ A I + + +Y IA + + Q I V +
Sbjct: 93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152
Query: 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIAS 465
S + + ++++ ++ + + + L
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212
Query: 466 GSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG----------------- 508
G D + V++ ++ A D + G
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272
Query: 509 --------IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNA-------MDN 553
I D K V +L+G + P S++ + +
Sbjct: 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ 332
Query: 554 TVRIWDIRPYVPGERCVKV--MSGHQHNFEKNLLRCAWSVSGLYV-----TAGSADKCVY 606
+V ++D++ + + + + K +++ ++ G V + +
Sbjct: 333 SVAVFDLKNLDAKYQVLPIAEWADLG-EGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALV 391
Query: 607 IWDTTTRRI 615
+ D T ++
Sbjct: 392 VVDDKTLKL 400
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 61.5 bits (149), Expect = 8e-10
Identities = 38/260 (14%), Positives = 72/260 (27%), Gaps = 56/260 (21%)
Query: 326 EVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQ 385
+ T + + +Y + + G + + G+Y S+ Y+
Sbjct: 145 DGTDFSLDNSYTMFTAIDAETMDVAWQVIV------DGNLDNTDADYTGKYATSTCYNS- 197
Query: 386 IFIWSVYGECENIGVMSGHTGAVMD----------LKFSTDGCHIFTCSTDQTLAVWDLE 435
E ++G D G + V
Sbjct: 198 ----------ERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSK-VPVVDGRG 246
Query: 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSV 495
+ + + + + + G+ IA+G TV V K + + T V
Sbjct: 247 ESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV 305
Query: 496 A------------FNDTAECVLTGGIDNDIKMWDL----------RTNSVVQKL-----R 528
A F+ T ID+ + W++ R N + QKL
Sbjct: 306 AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQP 365
Query: 529 GHSDTVTGLSLSPDGSYILS 548
GH+ S DG +++
Sbjct: 366 GHNHASLTESRDADGKWLVV 385
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 48.0 bits (114), Expect = 1e-05
Identities = 51/349 (14%), Positives = 96/349 (27%), Gaps = 65/349 (18%)
Query: 360 GHGGEIFCSKYHPDGQYI-ASSGYDRQIFIWSV-YGECENIGVMSGHTGAVMDLKFSTDG 417
H I + DG+Y+ + + ++ + + + I + + A+ L+
Sbjct: 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI-PNVQAIHGLRLQKVP 127
Query: 418 CHIFTC--STDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVW 475
+ + D + V Q+++ D+
Sbjct: 128 KTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW-QVIVDGNLDNTD---A 183
Query: 476 DPRKKNQAVSMNNTYQVTSVA---FNDTAECV----------------LTGGIDNDIKMW 516
D K + N+ + +A ND V T G +
Sbjct: 184 DYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD 243
Query: 517 DLRTNSVVQKLRGHSDTVTGLSLSPDGSY-ILSNAMDNTVRIWDIRPYVPGERCVKVMSG 575
+ + + GL+ SPDG Y I + + TV + I ++ +
Sbjct: 244 GRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAI------DKLDDLFED 296
Query: 576 HQHN-----FEKNL----LRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYK-------- 618
E L L + G T D V W+ Y
Sbjct: 297 KIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIR 356
Query: 619 -------LPGHNGSVNDVQFHPKEPIIMSA---SSDKTIYLGESPLHCD 657
PGHN + ++ S D+ + +G PLH +
Sbjct: 357 QKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVG--PLHPE 403
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 49.5 bits (116), Expect = 2e-06
Identities = 23/280 (8%), Positives = 69/280 (24%), Gaps = 14/280 (5%)
Query: 177 VSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYL-ISGSNDAELKVWNVRDR 235
+++++ + + D + T+ + G + + + + ++ ++ ++ + +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64
Query: 236 S-DIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALC 294
+ + S I ++ K LAL
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124
Query: 295 ISSITLNIDDFAFGIDTTQELRTRSMKRKNDE-------VTVYDREKNYKVQKVQKDVGR 347
L + + + T+++ D K Y +
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 348 TSNLFAPIMLLEGHGGEI--FCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHT 405
+ ++ Y+ + G + +
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244
Query: 406 GAVMDLKFSTDGCHIF-TCSTDQTLAVWDLEKGQRIKKMK 444
+ + DG ++ S T++V D M
Sbjct: 245 D-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 48.7 bits (114), Expect = 5e-06
Identities = 31/266 (11%), Positives = 64/266 (24%), Gaps = 40/266 (15%)
Query: 422 TCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN 481
S ++V D+ + + S G + + + V + D N
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 482 QAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP 541
++ VA + + V + + T++ V + GL+LSP
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125
Query: 542 DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG-------------------------- 575
DG + + V V
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI 185
Query: 576 -----------HQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNG 624
+ V + DT T +I ++P
Sbjct: 186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD 245
Query: 625 SVNDVQFHPK-EPIIMSASSDKTIYL 649
+ P + + ++ S T+ +
Sbjct: 246 -PAGIAVTPDGKKVYVALSFCNTVSV 270
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 46.8 bits (109), Expect = 2e-05
Identities = 36/301 (11%), Positives = 81/301 (26%), Gaps = 28/301 (9%)
Query: 322 RKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYI-ASS 380
++D ++V D N + G + PDG + ++
Sbjct: 9 SESDNISVIDVTSNKVTATIP------------------VGSNPMGAVISPDGTKVYVAN 50
Query: 381 GYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRI 440
+ + I V +G + + + ++ ++ +
Sbjct: 51 AHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTL--SVIDTTSNTV 108
Query: 441 KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDT 500
G+ L + + D TV V + K +++ +A
Sbjct: 109 AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD 168
Query: 501 AECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
V D+ + V +G++++P+G+ +D +
Sbjct: 169 GTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228
Query: 561 RPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYV-TAGSADKCVYIWDTTTRRIAYKL 619
+ + + A + G V A S V + DT T I +
Sbjct: 229 IDTGTNK-ITARIPVG-----PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282
Query: 620 P 620
Sbjct: 283 A 283
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 43.3 bits (100), Expect = 2e-04
Identities = 38/298 (12%), Positives = 67/298 (22%), Gaps = 24/298 (8%)
Query: 1099 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT-SKDGRVKQWDADNFE 1157
S + V + ++ + G P + + V D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 1158 RIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1217
I T+ S G + + + +T S T KS L S
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125
Query: 1218 TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKL 1277
G + T + I T+ + + D +
Sbjct: 126 DGKKLYVTNNGDKTV------SVINTVTKAVINTVSVGRSPK------GIAVTPDGTKVY 173
Query: 1278 WQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTT 1337
D T V + KV + + E T
Sbjct: 174 VANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY--------FNT 225
Query: 1338 VKIFFLDTFKFFISLYGHKLPVLSLDMSYD-STLIATGSGDRTVKVWGLDYGDCHKSL 1394
V + T K + P + ++ D + S TV V ++
Sbjct: 226 VSMIDTGTNKITARIPVGPDPA-GIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.6 bits (98), Expect = 4e-04
Identities = 33/269 (12%), Positives = 66/269 (24%), Gaps = 14/269 (5%)
Query: 908 VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLV-GTKDGRLLIVDIGAGEILEDIPAH 966
+ + + S TI GS + P V V + I+D ++ +PA
Sbjct: 14 ISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG 73
Query: 967 SQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREA----------D 1016
S + + V +V S A
Sbjct: 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVT 133
Query: 1017 EETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI 1076
++ T+ + V+PD + V+ D+ I
Sbjct: 134 NNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL--LAHEDSVTGVTFVP 1134
+ + ++ + T + D+ + +K + G+ P
Sbjct: 194 DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTP 253
Query: 1135 KTHYFFTT-SKDGRVKQWDADNFERIVTL 1162
+ S V D T+
Sbjct: 254 DGKKVYVALSFCNTVSVIDTATNTITATM 282
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.2 bits (97), Expect = 5e-04
Identities = 30/300 (10%), Positives = 72/300 (24%), Gaps = 24/300 (8%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYD-STLIATGSGDRTVKVWGLDYGDCHKS 1119
+ + + + K ++ P+ +S D + + + V + + +
Sbjct: 11 SDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT 69
Query: 1120 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLD 1179
+ A + T + D + + L L
Sbjct: 70 VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-------NTVAGTVKTGKSPLGLA 122
Query: 1180 MSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1239
+S D + + + ++ S G+ P + + D
Sbjct: 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI 182
Query: 1240 QWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRS 1299
++ S E ++ +
Sbjct: 183 SVIDTVTNSVIDTVKVE--------------AAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228
Query: 1300 HKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-LDTTVKIFFLDTFKFFISLYGHKLP 1358
+ T + + V+PD K + V+L TV + T ++ K P
Sbjct: 229 IDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.9 bits (91), Expect = 0.003
Identities = 9/85 (10%), Positives = 19/85 (22%), Gaps = 2/85 (2%)
Query: 1373 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT-SKDGRVKQWDADNFE 1431
S + V + ++ + G P + + V D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 1432 RIVTLHICSCSLNSPMNSVHLNSCP 1456
I T+ S ++
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYV 90
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 47.9 bits (112), Expect = 8e-06
Identities = 33/334 (9%), Positives = 83/334 (24%), Gaps = 23/334 (6%)
Query: 177 VSSAKDTFVKIWDADTGDCFKTMA--AHLTEVWGVCVMREDSYL-ISGSNDAELKVWNVR 233
++S + + +W+ + +V + V + YL + + + + +
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI- 66
Query: 234 DRSDIDTEDKDKLSEQLNQLLLSEDEP-DLTVSKIEVQIINELKNLSTGKKKWLQVFRLA 292
D + ++ + + + G ++
Sbjct: 67 --------APDDGALTFAAESALPGSLTHISTDHQGQFVFV--GSYNAGNVSVTRLEDGL 116
Query: 293 LCISSITLNIDDFAFGIDTTQELRTRSMK-RKNDEVTVYDREKNYKVQKVQKDVGRTSNL 351
+ D + + + RT + K D + ++ + + T
Sbjct: 117 PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG 176
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDL 411
P ++ + + D I V S A
Sbjct: 177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 236
Query: 412 KFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPV---RRGQLLIASGSD 468
T + V+ + + + +G G+ LIA+G
Sbjct: 237 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK 296
Query: 469 DCTVKVWDPRKKNQAVSMNNTYQV----TSVAFN 498
+ V++ + + Y V V N
Sbjct: 297 SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVN 330
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 47.1 bits (110), Expect = 2e-05
Identities = 29/255 (11%), Positives = 61/255 (23%), Gaps = 11/255 (4%)
Query: 510 DNDIKMWDLRTNSVVQKLR--GHSDTVTGLSLSPDGSYIL-SNAMDNTVRIWDIRPYVPG 566
I +W+L + + V + +SPD Y+ + V + I P
Sbjct: 13 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA---PD 69
Query: 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSV 626
+ + + + + G +V GS + + + +
Sbjct: 70 DGALTFAAESALPGSLTHI--STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127
Query: 627 NDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQI---LC 683
+ P + G ++ V T+ R +
Sbjct: 128 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 187
Query: 684 CHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMV 743
V +L E E+ A I + GR
Sbjct: 188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 247
Query: 744 NDKHRQILCCHGNDN 758
+ I +++
Sbjct: 248 DRTASLITVFSVSED 262
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 43.3 bits (100), Expect = 3e-04
Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 25/225 (11%)
Query: 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVM----DLKFSTD 416
G + GQ++ Y+ + + +GV+ G ++
Sbjct: 81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR 140
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPV-----RRGQLLIASGSDDCT 471
+ D+ + G + + T V P Q + +
Sbjct: 141 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS 200
Query: 472 VKVWDPRKKNQAVSMNNTYQVTSVAFN------------DTAECVLTGGIDNDIKMWDLR 519
V VW+ + + + T + F+ D + I ++ +
Sbjct: 201 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 260
Query: 520 TNSVVQKLRGHSDT---VTGLSLSPDGSYIL-SNAMDNTVRIWDI 560
+ V G T G ++ G Y++ + + + +++I
Sbjct: 261 EDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.4 bits (103), Expect = 9e-05
Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 24/226 (10%)
Query: 358 LEGHGGEIFCSKYHPDGQYIA----SSGYDRQIFIWSVY---GECENI----GVMSGHTG 406
+ + G I +++ PDG+ IA ++ GE + I G +G
Sbjct: 36 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRM 95
Query: 407 AVMDLKFSTDGCHIFTCSTDQT------LAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
F DG I + Q L + + + G +T + D R
Sbjct: 96 FTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIG 155
Query: 461 LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI------DNDIK 514
+ K V+ ++ ++ + ++ ++ I D +
Sbjct: 156 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQ 215
Query: 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
++ + + L+ DG IL + ++ I++
Sbjct: 216 IYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNP 260
|
| >d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]} Length = 722 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Anthrax protective antigen superfamily: Anthrax protective antigen family: Anthrax protective antigen domain: Anthrax protective antigen species: Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
Score = 42.2 bits (99), Expect = 8e-04
Identities = 38/259 (14%), Positives = 79/259 (30%), Gaps = 18/259 (6%)
Query: 1865 DNYSEIIFTTNNNSESTVVMSTLNSLLSENTTTNSPESESTTTNNPESESTTTSSPESES 1924
++ T++ ++ V+ S L +++ + +T+ P
Sbjct: 115 KGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKRSTSAGPTVPDRDNDGIPDSL 174
Query: 1925 TTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPES---ESTTTSSPE 1981
V + + + + SS + +T S P S + T
Sbjct: 175 EVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPE-KWSTASDPYSDFEKVTGRIDKN 233
Query: 1982 SESTTTSSLVSESTTTS--------SPESESTTTISPVSESTTTSSPVSES---TTTISP 2030
LV+ S E +T + SE+ T S S S T+ +
Sbjct: 234 VSPEARHPLVAAYPIVHVDMENIILSKN-EDQSTQNTDSETRTISKNTSTSRTHTSEVHG 292
Query: 2031 ESESTTTSSPASESTTTNNPKSESTTTNNPASESITSSSPASESTTTSSPASESTTTSSP 2090
+E + S + S S+T S S+ + + T +++ ++
Sbjct: 293 NAEVHASFFDIGGSVSAGFSNSNSSTVAIDHSLSLAGER--TWAETMGLNTADTARLNAN 350
Query: 2091 ASESTTTSSPASESTTTSS 2109
T ++P T+S
Sbjct: 351 IRYVNTGTAPIYNVLPTTS 369
|
| >d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]} Length = 722 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Anthrax protective antigen superfamily: Anthrax protective antigen family: Anthrax protective antigen domain: Anthrax protective antigen species: Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
Score = 41.8 bits (98), Expect = 0.001
Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 23/202 (11%)
Query: 1948 SSPESESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTT 2007
PE +S+ + +T++ P V + +
Sbjct: 139 QLPEL-KQKSSNSRKKRSTSAGPTVPDRDNDGIPDSLEVEGYTVDVKNKRTFLSPWISNI 197
Query: 2008 ISPVSESTTTSSPVSESTT-TISPESESTTTSSPASESTTTNNP---------------- 2050
+ SSP ST + E T + S +P
Sbjct: 198 HEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEARHPLVAAYPIVHVDMENII 257
Query: 2051 --KSESTTTNNPASESITSSSPASES---TTTSSPASESTTTSSPASESTTTSSPASEST 2105
K+E +T N SE+ T S S S T+ +E + S + S S+
Sbjct: 258 LSKNEDQSTQNTDSETRTISKNTSTSRTHTSEVHGNAEVHASFFDIGGSVSAGFSNSNSS 317
Query: 2106 TTSSPESESTTTSSPASESTTI 2127
T + S S +E+ +
Sbjct: 318 TVAIDHSLSLAGERTWAETMGL 339
|
| >d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]} Length = 722 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Anthrax protective antigen superfamily: Anthrax protective antigen family: Anthrax protective antigen domain: Anthrax protective antigen species: Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
Score = 40.7 bits (95), Expect = 0.002
Identities = 34/231 (14%), Positives = 71/231 (30%), Gaps = 10/231 (4%)
Query: 1892 SENTTTNSPESESTTTNNPESESTTTSSPESESTTTSSLVSESTTTSSPESESTTTSSPE 1951
S+N PE +S+ + +T++
Sbjct: 126 SQNKKEVISSDNLQ---LPEL-KQKSSNSRKKRSTSAGPTVPDRDNDGIPDSLEVEGYTV 181
Query: 1952 SESTTTSSLVSESTTTSSPESESTTTSSPESESTTTSSLV-SESTTTSSPESESTTTISP 2010
+ L + + + SSPE ST + E T ++ S P
Sbjct: 182 DVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEARHP 241
Query: 2011 -VSESTTTSSPVSESTTTISPESESTTTSSPASESTTTNNPKSESTTTNNPASESIT-SS 2068
V+ V +S E +T + SE+ T + S S T + + +
Sbjct: 242 LVAAYPIVH--VDMENIILSKN-EDQSTQNTDSETRTISKNTSTSRTHTSEVHGNAEVHA 298
Query: 2069 SPASESTTTSSPASESTTTSSPASESTTTSSPASESTTTSSPESESTTTSS 2119
S + S+ S S +++ S + + + + T +++ ++
Sbjct: 299 SFFDIGGSVSAGFSNSNSSTVAIDHSLSLAGERTWAETMGLNTADTARLNA 349
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 41.2 bits (95), Expect = 0.001
Identities = 32/259 (12%), Positives = 73/259 (28%), Gaps = 28/259 (10%)
Query: 323 KNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGY 382
+++ V D N+++Q K+ GR F G G+ +P+ + +
Sbjct: 32 AQNDIIVADTN-NHRIQIFDKE-GRFKFQF-------GECGKRDSQLLYPNRVAVVRNSG 82
Query: 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK 442
D + S I G + + + + V I
Sbjct: 83 DIIVTERS-PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFD 141
Query: 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAE 502
G+ C + +D + + D R V + +
Sbjct: 142 QNGNVLHKFGCSKHLEFPNGV-VVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITN 200
Query: 503 C-------------VLTGGIDNDIKMWDLRTNSVVQKL--RGHSDTVTGLSLSPDGSYIL 547
+ + ++ ++ + ++ L + ++L DGS +L
Sbjct: 201 YPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL 259
Query: 548 SNAMDNTVRIWDIRPYVPG 566
++ D + I+ P
Sbjct: 260 ASK-DYRLYIYRYVQLAPV 277
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 0.002
Identities = 22/212 (10%), Positives = 58/212 (27%), Gaps = 9/212 (4%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVM-SGHTGAVMDLKFSTD 416
+ + + PDG +A ++ + + FS D
Sbjct: 34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD 93
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT----- 471
G + + + + + N+ +P + + D
Sbjct: 94 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 153
Query: 472 VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS 531
KV Q ++ + + +D V+ + + ++ +
Sbjct: 154 YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST 213
Query: 532 DTVTGLSLSPDGSYIL---SNAMDNTVRIWDI 560
SL+P+G+ ++ S M + + +
Sbjct: 214 FLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 245
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2435 | |||
| d1xkga1 | 302 | Major mite fecal allergen der p 1 {House-dust mite | 100.0 | |
| d1cs8a_ | 316 | (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960 | 100.0 | |
| d1gmya_ | 254 | (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960 | 100.0 | |
| d1m6da_ | 214 | Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ppoa_ | 216 | Caricain (protease omega) {Papaya (Carica papaya) | 100.0 | |
| d1cqda_ | 216 | Proline-specific cysteine protease {Ginger rhizome | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| g8pch.1 | 228 | Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]} | 100.0 | |
| g1k3b.1 | 233 | Cathepsin C (dipeptidyl peptidase I), catalytic do | 100.0 | |
| d1yala_ | 218 | Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} | 100.0 | |
| d2r6na1 | 215 | (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960 | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d2h7ja1 | 217 | (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960 | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1fh0a_ | 221 | (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960 | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1me4a_ | 215 | Cruzain {Trypanosoma cruzi [TaxId: 5693]} | 100.0 | |
| d1aeca_ | 218 | Actinidin {Chinese gooseberry or kiwifruit (Actini | 100.0 | |
| d1deua_ | 275 | (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960 | 100.0 | |
| d1s4va_ | 224 | Vignain (bean endopeptidase) {Castor bean (Ricinus | 100.0 | |
| d2oula1 | 241 | Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} | 100.0 | |
| d1khqa_ | 212 | Papain {Papaya (Carica papaya) [TaxId: 3649]} | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1o0ea_ | 208 | Ervatamin C {East indian rosebay (Ervatamia corona | 100.0 | |
| d1iwda_ | 215 | Ervatamin B {Adam's apple (Ervatamia coronaria) [T | 99.98 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.98 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.81 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.8 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.78 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.78 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.75 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.73 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.72 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.7 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.62 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.62 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.6 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.59 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.3 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.27 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.26 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.25 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.19 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.18 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.77 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.73 | |
| d3gcba_ | 458 | Bleomycin hydrolase {Baker's yeast (Saccharomyces | 98.67 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.55 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.54 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.52 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.48 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.46 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.41 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.37 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.37 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.36 | |
| d2cb5a_ | 453 | Bleomycin hydrolase {Human (Homo sapiens) [TaxId: | 98.35 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.33 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.32 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.3 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.22 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.16 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.84 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.53 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.39 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.37 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.3 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.13 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.06 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.03 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.0 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.99 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.97 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.97 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.94 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.92 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.76 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.67 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.62 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.61 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.56 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.55 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.55 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.34 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.3 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.8 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.4 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 93.81 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.87 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.46 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.12 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 90.11 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 89.16 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 88.8 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 87.88 | |
| d1klra_ | 30 | ZFY {Human (Homo sapiens) [TaxId: 9606]} | 82.6 | |
| d1klra_ | 30 | ZFY {Human (Homo sapiens) [TaxId: 9606]} | 82.29 |
| >d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Major mite fecal allergen der p 1 species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]
Probab=100.00 E-value=5.2e-41 Score=409.83 Aligned_cols=223 Identities=18% Similarity=0.307 Sum_probs=160.7
Q ss_pred cccccCCCCCCCCCccccccccc-------ccCccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcC
Q psy4869 2137 EKLSANEDPEEFPNEDVFEHTFA-------EIPNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQP 2209 (2435)
Q Consensus 2137 e~~~~~~~~~ef~~~~~~~~~~~-------~~~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~ 2209 (2435)
.|.++|||.|||+++++...... .............++|++||||+ +|+|+||||||.|||||
T Consensus 43 ~N~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DwR~-----~g~vtpVkdQG~CGsCw----- 112 (302)
T d1xkga1 43 INHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQ-----MRTVTPIRMQGGCGSAW----- 112 (302)
T ss_dssp CCTTTTSCHHHHHHHHSBCHHHHHHHHHHHC-----CBCCCCSCCCSCEETTT-----TTCCCCCCBCCSSBCHH-----
T ss_pred CCcCCCCCHHHHHHHhcCCCcccccccccCCCCccccccccCCCCCcceeccc-----cCccccceeccccceeh-----
Confidence 46788999999987665321110 01111111223457999999999 89999999999999999
Q ss_pred CccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCCh
Q psy4869 2210 RTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDS 2289 (2435)
Q Consensus 2210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~ 2289 (2435)
|||+++++|++++++++..+. ||+|+|+ ||.. +.||.||++
T Consensus 113 ---------------------------Afa~~~~lE~~~~i~~~~~~~--lS~q~lv----dC~~------~~~C~gG~~ 153 (302)
T d1xkga1 113 ---------------------------AFSGVAATESAYLAYRDQSLD--LAEQELV----DCAS------QHGCHGDTI 153 (302)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHCCCCC--BCHHHHH----HHTC------SSTTBCCCH
T ss_pred ---------------------------hhhhHHhHHHHHHHhcCCccc--chhHHHH----hccc------cCccCCCcc
Confidence 999999999999999998776 9999999 8863 457999999
Q ss_pred hhHHHHHHHcCccCCCcccCCCCCccccccC-------------------cccceeeccc---CC------cccccceee
Q psy4869 2290 AAAWMYWINAGLVDGGDYGTHDVSMGRYIEG-------------------IGHAASVMGS---SN------PEVNNFEKV 2341 (2435)
Q Consensus 2290 ~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~~~-------------------~~~~~~~~~~---~~------~~~~~~~~~ 2341 (2435)
..|++|++++||++|.+|||......+.... +..+....++ +. ..+..|.++
T Consensus 154 ~~a~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g 233 (302)
T d1xkga1 154 PRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGR 233 (302)
T ss_dssp HHHHHHHHHHCEEBGGGSCCCSSCCCCCCCSSCEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSS
T ss_pred chhhhhhccCcccchhhcccccccccccccccccceeeeeeeecCchHHHHHHhhhhcccccceeecccccchhhccccc
Confidence 9999999999999999999977543321110 0000000000 00 112222222
Q ss_pred EEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEeecC
Q psy4869 2342 IRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAKLE 2413 (2435)
Q Consensus 2342 ~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~~~ 2413 (2435)
+....+ +.....+|||+|||||++ +|++|||||||||++|||+|||||+||.|+|||+++++ +|.|+
T Consensus 234 i~~~~~--~~~~~~~HaV~iVGyg~~-~g~~YWivkNSWG~~WGe~GY~~i~~~~n~cgi~~~~~--~~~~~ 300 (302)
T d1xkga1 234 TIIQRD--NGYQPNYHAVNIVGYSNA-QGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPY--VVILG 300 (302)
T ss_dssp SCBCCC--CSSCCEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCE--EEECT
T ss_pred eeecCC--CCCCcCCEEEEEEEEecc-CCeEEEEEEcCCCCchhcCCEEEEECCCCeeccCCCcE--EEEec
Confidence 211111 111235799999999975 78999999999999999999999999999999999988 44443
|
| >d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin L species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-40 Score=408.94 Aligned_cols=224 Identities=23% Similarity=0.359 Sum_probs=166.6
Q ss_pred ccccccCCCCCCCCCcccccccccccCccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFAEIPNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLK 2215 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~ 2215 (2435)
..|.++|||+|||++.+....................+||++||||+ +|+|+||||||.|||||
T Consensus 59 g~N~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~Dwr~-----~g~vtpVkdQG~CGsCw----------- 122 (316)
T d1cs8a_ 59 AMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWRE-----KGYVTPVKNQGQCGSCW----------- 122 (316)
T ss_dssp CCCTTTTCCHHHHHHHHCCBCCCCCSCCEECCCCTTCCCCSCEEGGG-----GTCCCCCCBCCSSSCHH-----------
T ss_pred eceeccccCcHHHHhhhccccccccccCccccCcccccCCCceECCc-----CCcccccccCCCCceee-----------
Confidence 45778899999998776644332221222222334567999999999 89999999999999999
Q ss_pred cceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHH
Q psy4869 2216 GLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMY 2295 (2435)
Q Consensus 2216 ~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~ 2295 (2435)
|||+++++|++++++++.... ||+|+|+ ||... .++.||.||++..||+|
T Consensus 123 ---------------------Afa~~~~~E~~~~i~~~~~~~--lS~Q~lv----dC~~~---~~~~~c~gg~~~~a~~y 172 (316)
T d1cs8a_ 123 ---------------------AFSATGALEGQMFRKTGRLIS--LSEQNLV----DCSGP---QGNEGCNGGLMDYAFQY 172 (316)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----HHCGG---GTCCGGGCBCHHHHHHH
T ss_pred ---------------------ehhhhHHHHHHHHhhcCCccc--chhhhhh----hcccc---ccCCCCCCCchHHHHHH
Confidence 999999999999999988766 9999999 77642 34678999999999999
Q ss_pred HHHcC-ccCCCcccCCCCCccccc--------------------------cCcccceeecccCCcccccceeeEEEEecC
Q psy4869 2296 WINAG-LVDGGDYGTHDVSMGRYI--------------------------EGIGHAASVMGSSNPEVNNFEKVIRLYSCE 2348 (2435)
Q Consensus 2296 ~~~~G-i~~~~~y~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2348 (2435)
++.+| +..|..|||......+.. ...+++.+.+......+..|.+++... .
T Consensus 173 ~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gpv~v~i~~~~~~f~~y~~Gi~~~--~ 250 (316)
T d1cs8a_ 173 VQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE--P 250 (316)
T ss_dssp HHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCCEEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECC--T
T ss_pred HHhcCcccccccccccccccccccccccccccccccccccCcHHHHHHHHHHhCCeEEEEEeccchhccccCCcccC--C
Confidence 99997 567778887554321110 011222222222333456666665422 2
Q ss_pred CCcCcccceEEEEEEeccC---CCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeE
Q psy4869 2349 GSINPRYIHSVKIIGWGKS---SQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMA 2407 (2435)
Q Consensus 2349 ~~~~~~~~Hav~iVGyg~~---~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~ 2407 (2435)
.+....++|||+|||||.+ .+|++|||||||||+.|||+|||||+||. |+|||++.+++
T Consensus 251 ~c~~~~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WGe~GY~ri~r~~~n~CGI~~~~~y 313 (316)
T d1cs8a_ 251 DCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASY 313 (316)
T ss_dssp TCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEE
T ss_pred CCCCCcCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcccCCEEEEeeCCCCcCccCCeeee
Confidence 2222356899999999964 36889999999999999999999999986 99999999874
|
| >d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin B species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-38 Score=375.30 Aligned_cols=195 Identities=37% Similarity=0.734 Sum_probs=150.2
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
.||++||||+.|++| |+|+||||||.||||| |||++++||+++++++
T Consensus 1 ~lP~~~D~R~~w~~~-~~vtpV~dQg~cGsCw--------------------------------AfA~~~~lEs~~~i~~ 47 (254)
T d1gmya_ 1 KLPASFDAREQWPQC-PTIKEIRDQGSCGSCW--------------------------------AFGAVEAISDRICIHT 47 (254)
T ss_dssp CCCSSEEHHHHSTTC-GGGGCCCBCCSSCCHH--------------------------------HHHHHHHHHHHHHHHT
T ss_pred CCCcCCcchhhcCCC-CCCCCCCCCCCChhHH--------------------------------HHHHHHHHHHHHHHHH
Confidence 489999999999996 7999999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcc-----------------
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMG----------------- 2315 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~----------------- 2315 (2435)
+......||+|+|+ +|... ..+.||.||++..|++++.++|++.|..|++......
T Consensus 48 ~~~~~~~lS~~~l~----~~~~~---~~~~gc~gg~~~~a~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (254)
T d1gmya_ 48 NAHVSVEVSAEDLL----TCCGS---MCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120 (254)
T ss_dssp TTSSCCCBCHHHHH----HHSGG---GGBCGGGCBCHHHHHHHHHHTCBCBCCSTTCCCSSSCCCSCCCBSSSCCSSCBC
T ss_pred CCCCccccchHHHH----hhccc---cCCCCCCCCcHHHHHHHHHHcCccccccccccccccccccccccccccCccCcc
Confidence 87766669999999 55432 2346899999999999999999999998876421000
Q ss_pred -------------cc----------------------ccCcccceeecccCCc------ccccceeeEEEEecCCCcCcc
Q psy4869 2316 -------------RY----------------------IEGIGHAASVMGSSNP------EVNNFEKVIRLYSCEGSINPR 2354 (2435)
Q Consensus 2316 -------------~~----------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 2354 (2435)
.. ...++..+...+|+.+ .+..|.+++....+ ....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gpv~~~~~~~~~f~~y~~gi~~~~~---~~~~ 197 (254)
T d1gmya_ 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVT---GEMM 197 (254)
T ss_dssp CSCCCCCCCCCSCCTTCCSCHHHHCBCBSCCEECCSCHHHHHHHHHHHCCEEEEEEEEGGGTTCCSSEECCCS---CCEE
T ss_pred ccccCCccccccccCCcccceeeeeeeeeeeeccccHHHHHHHHHHHcCCEEEEEEeechhhhccCCcccccc---cccc
Confidence 00 0001111122233322 34444444332222 2335
Q ss_pred cceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEee
Q psy4869 2355 YIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAK 2411 (2435)
Q Consensus 2355 ~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~ 2411 (2435)
++|||+|||||++ ++++|||||||||++|||+|||||+||.|.||||+++++++|+
T Consensus 198 ~~Hav~IVGyg~~-~g~~ywIvkNSWG~~WGd~GYf~i~~~~n~cgi~~~~~~~~p~ 253 (254)
T d1gmya_ 198 GGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 253 (254)
T ss_dssp EEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBC
T ss_pred ccEEEEEEEEecc-CCceEEEEEcCCCCCcCCCceEEEEcCCCccCcCCceEeccCC
Confidence 6899999999975 7889999999999999999999999999999999999999886
|
| >d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Cathepsin F species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-36 Score=353.52 Aligned_cols=188 Identities=25% Similarity=0.457 Sum_probs=144.9
Q ss_pred CCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCC
Q psy4869 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKG 2254 (2435)
Q Consensus 2175 P~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~ 2254 (2435)
|++||||+ +|+|+||||||.||||| |||+++++|++++++++.
T Consensus 2 P~~~D~R~-----~~~vtpV~dQg~cGsCw--------------------------------Afa~~~~le~~~~~~~~~ 44 (214)
T d1m6da_ 2 PPEWDWRS-----KGAVTKVKDQGMCGSCW--------------------------------AFSVTGNVEGQWFLNQGT 44 (214)
T ss_dssp CSCEEGGG-----GTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHSC
T ss_pred CCceeCCC-----CCCCCCCccCCcCccHH--------------------------------HHHHHHHHHHHHHHHcCC
Confidence 89999999 89999999999999999 999999999999999987
Q ss_pred CcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcC-ccCCCcccCCCCCcccc----------------
Q psy4869 2255 QVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAG-LVDGGDYGTHDVSMGRY---------------- 2317 (2435)
Q Consensus 2255 ~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~G-i~~~~~y~~~~~~~~~~---------------- 2317 (2435)
.+. ||+|+++ +|.. .+.||.||.+..+++|++++| +..|.+|||......+.
T Consensus 45 ~~~--~S~q~~~----~c~~-----~~~gc~G~~~~~~~~~~~~~g~~~~e~~~py~~~~~~~~~~~~~~~~~~~~~~~~ 113 (214)
T d1m6da_ 45 LLS--LSEQELL----DCDK-----MDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVEL 113 (214)
T ss_dssp CCC--BCHHHHH----HHCS-----SSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCCCGGGCCBCCSEEEEC
T ss_pred Ccc--cCHHHhc----cccc-----cCCccCCCcchhhHHHHHhCCcccccccccccCccCcccccccccceeeeccccc
Confidence 766 9999999 7764 346899999999999999986 67899999976532110
Q ss_pred ---ccCcccceeecccCCccc-----ccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCce
Q psy4869 2318 ---IEGIGHAASVMGSSNPEV-----NNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGL 2389 (2435)
Q Consensus 2318 ---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy 2389 (2435)
...++......+|+.+.+ .++..+...+.........++|||+|||||++ ++++|||||||||+.|||+||
T Consensus 114 ~~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~HaV~iVGyg~~-~~~~ywivkNSWG~~WGd~Gy 192 (214)
T d1m6da_ 114 SQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQR-SDVPFWAIKNSWGTDWGEKGY 192 (214)
T ss_dssp CSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTE
T ss_pred ccCHHHHHHHHHhcCCeEEEEEEEehhhccCCccccccCCCCCcccceeEEEEccccc-CCceEEEEECCCCCccccCCE
Confidence 000111122233333222 23333333332222223357899999999965 788999999999999999999
Q ss_pred EEEEeeCcccccccceeEEEee
Q psy4869 2390 FKIRRGVNMCSIEDSVMAGEAK 2411 (2435)
Q Consensus 2390 ~~i~r~~n~cgi~~~~~~~~~~ 2411 (2435)
|||+||.|+||||+++++++++
T Consensus 193 ~~i~~g~n~cgI~~~~~~~~~~ 214 (214)
T d1m6da_ 193 YYLHRGSGACGVNTMASSAVVD 214 (214)
T ss_dssp EEEESSSCGGGTTTTCEEEECC
T ss_pred EEEEcCCCcccccceeeEEecC
Confidence 9999999999999999987764
|
| >d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Caricain (protease omega) species: Papaya (Carica papaya) [TaxId: 3649]
Probab=100.00 E-value=1.8e-35 Score=345.55 Aligned_cols=181 Identities=29% Similarity=0.474 Sum_probs=141.0
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||+++++|++++++++
T Consensus 1 LP~~~Dwr~-----~~~vtpV~dQg~cGsCw--------------------------------Afa~~~~~e~~~~~~~~ 43 (216)
T d1ppoa_ 1 LPENVDWRK-----KGAVTPVRHQGSCGSCW--------------------------------AFSAVATVEGINKIRTG 43 (216)
T ss_dssp CCSCEETTT-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcccCCc-----CCCCCCcccCCcCchHH--------------------------------HHHHHHHHHHHHHHHhC
Confidence 899999999 88999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccccccC-------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYIEG------------- 2320 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~~~------------- 2320 (2435)
.... ||+|+|+ +|.. .+.+|.||+...+++++++.|+++|++|||......+....
T Consensus 44 ~~~~--lS~q~l~----~~~~-----~~~~~~G~~~~~~~~~~~~~G~~~e~~yPy~~~~~~~~~~~~~~~~~~~~~~~~ 112 (216)
T d1ppoa_ 44 KLVE--LSEQELV----DCER-----RSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGR 112 (216)
T ss_dssp CCCC--BCHHHHH----HHCS-----SSCTTBCCCHHHHHHHHHHHCBCBTTTSCCCSSCCCCCGGGCCSCCBCCCEEEE
T ss_pred CCCC--ccHHHHh----hhhh-----ccCcccccccccccccccccCccccccCCccccccccccccccccceeecccee
Confidence 7766 9999999 6654 23579999999999999999999999999976532211000
Q ss_pred --------------cccceeecccCCcccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCC
Q psy4869 2321 --------------IGHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGE 2386 (2435)
Q Consensus 2321 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~ 2386 (2435)
.+++...+......+..|+.++....+ ...++|||+|||||.+ ++++|||||||||++|||
T Consensus 113 ~~~~~~~~~~~~l~~gpv~~~~~~~~~~~~~y~~g~~~~~~----~~~~~Hav~iVGyg~~-~~~~ywivrNSWG~~WGd 187 (216)
T d1ppoa_ 113 VQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPC----GTKVDHAVTAVGYGKS-GGKGYILIKNSWGTAWGE 187 (216)
T ss_dssp CCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCSC----CSCCCEEEEEEEEEEE-TTEEEEEEECSBCSSSTB
T ss_pred ecccHHHHHHHHHhhCCCceeeeeccccceecCCccccccc----cccCCcEEEEEecccc-CCCceEEEECCCCCCccc
Confidence 011112222222234445544432222 2246799999999975 788999999999999999
Q ss_pred CceEEEEeeC----cccccccceeE
Q psy4869 2387 QGLFKIRRGV----NMCSIEDSVMA 2407 (2435)
Q Consensus 2387 ~Gy~~i~r~~----n~cgi~~~~~~ 2407 (2435)
+|||||+|+. |.|||+..++.
T Consensus 188 ~Gy~~i~~~~~~~~~~Cgi~~~~~~ 212 (216)
T d1ppoa_ 188 KGYIRIKRAPGNSPGVCGLYKSSYY 212 (216)
T ss_dssp TTEEEEECCCSSSSCGGGTTSCCEE
T ss_pred CCEEEEEcCCCCCCCcCccccEeee
Confidence 9999999986 56999999874
|
| >d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Proline-specific cysteine protease species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]
Probab=100.00 E-value=1.4e-35 Score=346.99 Aligned_cols=185 Identities=24% Similarity=0.445 Sum_probs=143.9
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++++++
T Consensus 1 LP~~~DwR~-----~~~itpV~dQg~cgsCw--------------------------------Afa~~~~le~~~~~~~~ 43 (216)
T d1cqda_ 1 LPDSIDWRE-----NGAVVPVKNQGGCGSCW--------------------------------AFSTVAAVEGINQIVTG 43 (216)
T ss_dssp CCSCEETTT-----TTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcccCCc-----CCCCCCcccCCCCchHH--------------------------------HHHHHHHHHHHHHHHhC
Confidence 899999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCc-cCCCcccCCCCCcccc---------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGL-VDGGDYGTHDVSMGRY--------------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi-~~~~~y~~~~~~~~~~--------------- 2317 (2435)
.... ||+|+|+ +|... ..||.||+...|++|++++|+ ..|.+|||........
T Consensus 44 ~~~~--lS~q~l~----~c~~~-----~~gc~Gg~~~~a~~y~~~~g~~~~e~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (216)
T d1cqda_ 44 DLIS--LSEQQLV----DCTTA-----NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYEN 112 (216)
T ss_dssp CCCC--BCHHHHH----HHCTT-----SCTTBCCCHHHHHHHHHHHTSBCBTTTSCCCSSCCCCCSSSCCCSBCCSEEEE
T ss_pred CCcc--ccHHHhh----hcccc-----cCCCCCcchHHHHHHHHhcCCccccccCCccccccccccccCCceeEeeeEEe
Confidence 7766 9999999 77642 357999999999999999975 4578899865421110
Q ss_pred -----------ccCcccceeecccCCcccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCC
Q psy4869 2318 -----------IEGIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGE 2386 (2435)
Q Consensus 2318 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~ 2386 (2435)
+....++..........+..|+.+++.. .....++|||+|||||++ ++++|||||||||++|||
T Consensus 113 ~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~~----~~~~~~~Hav~iVGyg~~-~~~~~wiv~NSWG~~WGd 187 (216)
T d1cqda_ 113 VPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG----SCNISANHALTVVGYGTE-NDKDFWIVKNSWGKNWGE 187 (216)
T ss_dssp CCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECC----CCCCCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTB
T ss_pred cCCcchhhHHHHhhcCCcceeeeeecccccccccCcccc----cccccCCcceeeeccccc-cCCceEEEECCCCCcccc
Confidence 0001122222222333455555544322 123457899999999975 688999999999999999
Q ss_pred CceEEEEeeC----cccccccceeEEEee
Q psy4869 2387 QGLFKIRRGV----NMCSIEDSVMAGEAK 2411 (2435)
Q Consensus 2387 ~Gy~~i~r~~----n~cgi~~~~~~~~~~ 2411 (2435)
+|||||+|+. |.|||++.+...+||
T Consensus 188 ~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~ 216 (216)
T d1cqda_ 188 SGYIRAERNIENPDGKCGITRFASYPVKK 216 (216)
T ss_dssp TTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred CCEEEEEcCCCCCCCCCCccceeeeeecC
Confidence 9999999976 689999999977664
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-32 Score=336.99 Aligned_cols=287 Identities=25% Similarity=0.469 Sum_probs=265.7
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
...|+||.+.|++|+|+|++++|++|+.||.|+|||+.... ....+.+|.+.|.+++|++++.+++++..++.+.+|+.
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-EEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence 45799999999999999999999999999999999997653 45678899999999999999999999999999999999
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeE
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDI 513 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V 513 (2435)
...+....+.+|...+.++.+.+++. .+++++.|+.+++||+++++....+ .+...+.+++|+|++++|++|+.||.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v 167 (317)
T d1vyhc1 89 QGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167 (317)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cccccccccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence 99999888999999999999998875 5678999999999999998887776 477789999999999999999999999
Q ss_pred EEEECCCCcEEEEEecCCCCEEEEEEcCCC--------------------CEEEEEECCCcEEEEEcCCCCCCCceEEEE
Q psy4869 514 KMWDLRTNSVVQKLRGHSDTVTGLSLSPDG--------------------SYILSNAMDNTVRIWDIRPYVPGERCVKVM 573 (2435)
Q Consensus 514 ~lwD~~s~~~v~~l~~h~~~V~~i~~spdg--------------------~~las~s~Dg~I~lWdl~~~~~~~~~v~~~ 573 (2435)
++||.++++.+..+.+|...+.++.|+|++ .++++++.|+.|++||++ ..+++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~----~~~~~~~~ 243 (317)
T d1vyhc1 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS----TGMCLMTL 243 (317)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT----TTEEEEEE
T ss_pred EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC----CCcEEEEE
Confidence 999999999999999999999999999853 578999999999999998 46788888
Q ss_pred eCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 574 SGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 574 ~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
.+|. ..+..++|+|+|++|++|+.||.|+|||+++++++..+.+|.+.|++++|+|++++|++|+.||+|++||
T Consensus 244 ~~~~----~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 244 VGHD----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ECCS----SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred eCCC----CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 8875 4789999999999999999999999999999999999999999999999999999999999999999997
|
| >d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Chymopapain species: Papaya (Carica papaya) [TaxId: 3649]
Probab=100.00 E-value=2.6e-35 Score=344.64 Aligned_cols=183 Identities=23% Similarity=0.428 Sum_probs=143.8
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
.|++||||+ +++|+||||||.||||| |||++++||++++++++
T Consensus 1 ~P~~~DwR~-----~~~vtpV~dQg~cGsCw--------------------------------Afa~~~~~e~~~~~~~~ 43 (218)
T d1yala_ 1 YPQSIDWRA-----KGAVTPVKNQGACGSCW--------------------------------AFSTIATVEGINKIVTG 43 (218)
T ss_dssp CCSCEETTT-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCCEeCCC-----CCCCCCCccCCCCchHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 499999999 88999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcccc----------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRY---------------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~---------------- 2317 (2435)
.... ||+|+|+ +|.. .+.||.|+.+..++.|+++.|++.|.+|||........
T Consensus 44 ~~~~--lS~q~l~----~c~~-----~~~g~~g~~~~~~~~~~~~~g~~~e~~~py~~~~~~~~~~~~~~~~~~~~~~~~ 112 (218)
T d1yala_ 44 NLLE--LSEQELV----DCDK-----HSYGCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKR 112 (218)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHCBCBTTTSCCCSSCCCCCGGGCCSCCBCCSEEEE
T ss_pred CCcc--cchhhhh----cccc-----ccCCCcccccchhhhhhhhhcccccccCCcccccCccccccccccceeeccceE
Confidence 7665 9999999 7764 34679999999999999999999999999965431110
Q ss_pred -----------ccCcccceeecccCCcccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCC
Q psy4869 2318 -----------IEGIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGE 2386 (2435)
Q Consensus 2318 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~ 2386 (2435)
+...++++..+......+..|..+++...+. ...+|||+|||||.+ ++++|||||||||++|||
T Consensus 113 ~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~Giy~~~~~----~~~~Hav~IVGyg~~-~g~~ywivkNSWG~~WGd 187 (218)
T d1yala_ 113 VPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCG----TKLDHAVTAVGYGTS-DGKNYIIIKNSWGPNWGE 187 (218)
T ss_dssp CCSSBHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCSCC----SCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTB
T ss_pred eCCccHHHHHHHHHhCCceEEEEecccchhhcccceeeeccc----ccCCcEEEEEEeecc-CCceEEEEECCCCCCccc
Confidence 0001122222222333455565554432222 246799999999975 688999999999999999
Q ss_pred CceEEEEeeC----cccccccceeEEE
Q psy4869 2387 QGLFKIRRGV----NMCSIEDSVMAGE 2409 (2435)
Q Consensus 2387 ~Gy~~i~r~~----n~cgi~~~~~~~~ 2409 (2435)
+|||||+|+. |+|||++.+...+
T Consensus 188 ~Gy~~I~~~~~~~~~~CGI~~~~~~p~ 214 (218)
T d1yala_ 188 KGYMRLKRQSGNSQGTCGVYKSSYYPF 214 (218)
T ss_dssp TTEEEEECCCSBSCCGGGTTSSCEEEE
T ss_pred CCEEEEEccCCCCCCcCCccceeeecc
Confidence 9999999976 6899999988543
|
| >d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin K species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-35 Score=343.28 Aligned_cols=185 Identities=24% Similarity=0.466 Sum_probs=144.2
Q ss_pred CCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCC
Q psy4869 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKG 2254 (2435)
Q Consensus 2175 P~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~ 2254 (2435)
|++||||+ +|+|+||||||.||||| |||+++++|+++++++++
T Consensus 2 P~~~DwR~-----~~~vtpV~dQG~cGsCw--------------------------------Afa~~~~~e~~~~~~~~~ 44 (215)
T d2r6na1 2 PDSVDYRK-----KGYVTPVKNQGQCGSCW--------------------------------AFSSVGALEGQLKKKTGK 44 (215)
T ss_dssp CSCEETTT-----TTCCCCCCBCTTSCCHH--------------------------------HHHHHHHHHHHHHHHHSC
T ss_pred CCCEeCcc-----CCCCCCCccCccChhHH--------------------------------HHHHHHHHHHHHHHHhCC
Confidence 89999999 89999999999999999 999999999999999998
Q ss_pred CcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcC-ccCCCcccCCCCCcccc----------------
Q psy4869 2255 QVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAG-LVDGGDYGTHDVSMGRY---------------- 2317 (2435)
Q Consensus 2255 ~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~G-i~~~~~y~~~~~~~~~~---------------- 2317 (2435)
... ||+|+|+ +|... ..+|.||....|++|++.+| +..+..|||........
T Consensus 45 ~~~--lS~q~l~----~c~~~-----~~~c~G~~~~~a~~~~~~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (215)
T d2r6na1 45 LLN--LSPQNLV----DCVSE-----NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREI 113 (215)
T ss_dssp CCC--BCHHHHH----HHCTT-----SCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCEEEEC
T ss_pred Ccc--chhhhhh----hcccc-----cCccCCcchhhHHHHHHhcCccccccCCCcccccccccccccccceeecceeec
Confidence 776 9999999 77642 35799999999999999987 78888998865421110
Q ss_pred ----ccC-------cccceeecccCCcccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCC
Q psy4869 2318 ----IEG-------IGHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGE 2386 (2435)
Q Consensus 2318 ----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~ 2386 (2435)
... .+++..........+..|.+++... ........+|||+|||||++ .+++|||||||||++|||
T Consensus 114 ~~~~~~~ik~~~~~~g~v~~~~~~~~~~f~~y~~gi~~~--~~~~~~~~~Hav~iVGy~~~-~~~~ywivrNSWG~~WGe 190 (215)
T d2r6na1 114 PEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYD--ESCNSDNLNHAVLAVGYGIQ-KGNKHWIIKNSWGENWGN 190 (215)
T ss_dssp CTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECC--TTCCTTCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTB
T ss_pred cccHHHHHHHhhcccccEEEEEEeeechhcccCCCcccC--CCCCCCCCCeeEEEEEeecc-CCCcEEEEEcCCCCCccc
Confidence 001 1122222223333455666654332 22223457899999999975 677899999999999999
Q ss_pred CceEEEEeeC-cccccccceeEEEeec
Q psy4869 2387 QGLFKIRRGV-NMCSIEDSVMAGEAKL 2412 (2435)
Q Consensus 2387 ~Gy~~i~r~~-n~cgi~~~~~~~~~~~ 2412 (2435)
+|||||+|+. |+|||++.+. +|++
T Consensus 191 ~Gy~~i~~~~~n~Cgi~~~~~--~p~~ 215 (215)
T d2r6na1 191 KGYILMARNKNNACGIANLAS--FPKM 215 (215)
T ss_dssp TTEEEEESSSSSGGGTTSSCE--EEEC
T ss_pred CCeEEEEeCCCCcCcccCccc--cccC
Confidence 9999999997 8999999876 6654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-32 Score=339.53 Aligned_cols=280 Identities=16% Similarity=0.300 Sum_probs=247.3
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce----eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC----ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 360 gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~----~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
+|...|+|++|+|+|++||+|+ ||.|+|||+.... .......+|.+.|.+++|+||+++|++++.|+.|++||+.
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence 7999999999999999999997 8999999986432 1233456799999999999999999999999999999987
Q ss_pred CC--ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCe
Q psy4869 436 KG--QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDND 512 (2435)
Q Consensus 436 tg--~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~ 512 (2435)
.. +....+..|...+..+.|++++ .++++++.|+.|++||+++++..... .+...+.+++|+++++++++|+.||.
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~ 206 (337)
T d1gxra_ 128 APTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44 5567788899999999998876 56788999999999999988877666 47888999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCC
Q psy4869 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592 (2435)
Q Consensus 513 V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spd 592 (2435)
|++||+++++.+..+. |.+.|.+++|+|++++|++++.|+.+++||++. ... .....|. ..+.+++|+|+
T Consensus 207 v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~----~~~-~~~~~~~----~~i~~v~~s~~ 276 (337)
T d1gxra_ 207 VRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK----PDK-YQLHLHE----SCVLSLKFAYC 276 (337)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS----SCE-EEECCCS----SCEEEEEECTT
T ss_pred ccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccc----ccc-ccccccc----cccceEEECCC
Confidence 9999999999887765 888999999999999999999999999999984 222 2333443 47899999999
Q ss_pred CCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 593 GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 593 g~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
|++|++|+.||.|++||..+++.+..+ .|.+.|.+++|+|++++|++|+.||+|++||+
T Consensus 277 g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 277 GKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 999999999999999999999998876 58899999999999999999999999999997
|
| >d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin S species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-35 Score=345.33 Aligned_cols=187 Identities=26% Similarity=0.506 Sum_probs=140.4
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +++|+||||||.||||| |||++++||++++++++
T Consensus 1 LP~~~Dwr~-----~~~vtpV~dQG~cGsCw--------------------------------AfA~~~~~e~~~~i~~~ 43 (217)
T d2h7ja1 1 LPDSVDWRE-----KGCVTEVKYQGSCGACW--------------------------------AFSAVGALEAQLKLKTG 43 (217)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcccCCc-----CCCCCCCccCCCchHHH--------------------------------HHHHHHHHHHHHHHHhC
Confidence 799999999 78999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHH-cCccCCCcccCCCCCccccc--------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWIN-AGLVDGGDYGTHDVSMGRYI-------------- 2318 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~-~Gi~~~~~y~~~~~~~~~~~-------------- 2318 (2435)
.... ||+|+++ +|... ...+.||+||.+..|+.++.+ .|++.+.+|||.........
T Consensus 44 ~~~~--~S~~~~~----~~~~~--~~~~~gc~gg~~~~a~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 115 (217)
T d2h7ja1 44 KLVS--LSAQNLV----DCSTE--KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTE 115 (217)
T ss_dssp CCCC--BCHHHHH----HHSCG--GGTCCTTBCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCEEEE
T ss_pred CCCc--ccHHHhh----hhhcc--cccCCCCCCCcccceeeehhhcccccccccCCCcccccccccccccccceeeeeec
Confidence 8766 9999999 55432 124578999999999987665 58999999999665321110
Q ss_pred -------------cCcccceeecccCCcccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2319 -------------EGIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2319 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
...+++..........+..+..++ |.+.. ....++|||+|||||.+ .+++|||||||||++||
T Consensus 116 ~~~~~~~~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi--~~~~~-~~~~~~Hav~iVGy~~~-~~~~ywivrNSWG~~WG 191 (217)
T d2h7ja1 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPS-CTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFG 191 (217)
T ss_dssp CCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSC--BCCTT-CCSCCCEEEEEEEEEEE-TTEEEEEEECSBCTTST
T ss_pred cCccHHHHHHHHhhcCceEEEEEeeehhhhcccCCcc--eeCCC-CCCCCCeEEEEEecccC-CCceEEEEEcCCCCCcc
Confidence 001111111112222333333332 22221 12356899999999965 78899999999999999
Q ss_pred CCceEEEEeeC-cccccccceeEEEee
Q psy4869 2386 EQGLFKIRRGV-NMCSIEDSVMAGEAK 2411 (2435)
Q Consensus 2386 ~~Gy~~i~r~~-n~cgi~~~~~~~~~~ 2411 (2435)
|+|||||+||. |.||||+++. +|.
T Consensus 192 ~~Gy~~i~~~~~n~cgi~~~~~--~p~ 216 (217)
T d2h7ja1 192 EEGYIRMARNKGNHCGIASFPS--YPE 216 (217)
T ss_dssp BTTEEEEECSSSSGGGTTTSCE--EEE
T ss_pred cCCEEEEecCCCCcCCcccccc--cee
Confidence 99999999997 9999999877 554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-31 Score=337.28 Aligned_cols=288 Identities=18% Similarity=0.312 Sum_probs=251.4
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCce---eE--EEeccCCCEEEEEEccCCCEEEEEeCCCc
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC---HK--SLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1147 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~---~~--~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~ 1147 (2435)
+.+..+ .|...|.+++|+|++++|++|+ ||.|+|||+..+.. +. ....|...|.+++|+|++++|++++.|+.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence 444455 6999999999999999999987 89999999976532 22 33468999999999999999999999999
Q ss_pred EEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCC
Q psy4869 1148 VKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1227 (2435)
Q Consensus 1148 V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~ 1227 (2435)
|++||+........ ..+..|...+.+++|++++.++++++.|+.|++||+.+++.......|...|.+++|++++.
T Consensus 121 i~iwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 196 (337)
T d1gxra_ 121 LSIWDLAAPTPRIK----AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp EEEEECCCC--EEE----EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred cccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999876543322 23457889999999999999999999999999999999999988999999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeee
Q psy4869 1228 YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLH 1307 (2435)
Q Consensus 1228 ~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1307 (2435)
.+++++.|+.+++||+++.+.+..+
T Consensus 197 ~~~~~~~d~~v~i~d~~~~~~~~~~------------------------------------------------------- 221 (337)
T d1gxra_ 197 KLWTGGLDNTVRSWDLREGRQLQQH------------------------------------------------------- 221 (337)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEE-------------------------------------------------------
T ss_pred ccccccccccccccccccceeeccc-------------------------------------------------------
Confidence 9999999999999999876543321
Q ss_pred cccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1308 TRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1387 (2435)
Q Consensus 1308 ~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~ 1387 (2435)
.+...+.+++|+|++++|++|+.+|.+++||+...+.. ....|...|.+++|+|+|++|++|+.|+.|++||+.+
T Consensus 222 ----~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~ 296 (337)
T d1gxra_ 222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ----ccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 12356889999999999999999999999999988764 5668999999999999999999999999999999999
Q ss_pred CceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEEC
Q psy4869 1388 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1427 (2435)
Q Consensus 1388 gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~ 1427 (2435)
++++... .|..+|++++|+|++.+|++||.||.|+|||+
T Consensus 297 ~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 297 GASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 9988765 57789999999999999999999999999996
|
| >d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin V species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-35 Score=344.17 Aligned_cols=188 Identities=28% Similarity=0.484 Sum_probs=145.2
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||+++++|++++++.+
T Consensus 1 LP~~~DwR~-----~~~vtpV~dQG~cGsCw--------------------------------AfA~~~~~e~~~~~~~~ 43 (221)
T d1fh0a_ 1 LPKSVDWRK-----KGYVTPVKNQKQCGSCW--------------------------------AFSATGALEGQMFRKTG 43 (221)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCCSSCCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCCeeCCc-----CCCCCCCccCCCCchHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 899999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcC-ccCCCcccCCCCCccccc--------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAG-LVDGGDYGTHDVSMGRYI-------------- 2318 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~G-i~~~~~y~~~~~~~~~~~-------------- 2318 (2435)
.... ||+|+++ +|... .++.||+||++..|++|+.+.| +..+.+|||.........
T Consensus 44 ~~~~--lS~~~~~----~~~~~---~~~~~~~gg~~~~a~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 114 (221)
T d1fh0a_ 44 KLVS--LSEQNLV----DCSRP---QGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTV 114 (221)
T ss_dssp CCCC--BCHHHHH----HHCGG---GTCCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCSCEEE
T ss_pred CCcc--cccceeE----Eeccc---cCCcccCCCchhhhhhhhhhcCccccccCcCccccccccccccccccccceeeee
Confidence 7766 9999999 66542 2456899999999999999886 678999999665321100
Q ss_pred -------------cCcccceeecccCCcccccceeeEEEEecCCCcCcccceEEEEEEeccC---CCCcceEEEEccCCC
Q psy4869 2319 -------------EGIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKS---SQNEPYWLCTNSYNQ 2382 (2435)
Q Consensus 2319 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~---~~g~~yWiikNSWG~ 2382 (2435)
...+++...+......+..|+.++.... .......+|+|+|||||.+ +++.+|||||||||+
T Consensus 115 ~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~~~--~~~~~~~~ha~~ivG~g~~~~~~~~~~ywivrNSWG~ 192 (221)
T d1fh0a_ 115 VAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEP--DCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGP 192 (221)
T ss_dssp CCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCT--TCCSSCCCEEEEEEEEEESSSCTTSSEEEEEECSBCT
T ss_pred cCCcHHHHHHHHHHhcCCceEEEEeccccccccCCCccccc--cccccCCcccEEEeeEeccCcCCCCceEEEEEeCCCC
Confidence 0011222222222334566666554322 2223356899999999964 468889999999999
Q ss_pred CcCCCceEEEEeeC-cccccccceeEEEee
Q psy4869 2383 GWGEQGLFKIRRGV-NMCSIEDSVMAGEAK 2411 (2435)
Q Consensus 2383 ~WG~~Gy~~i~r~~-n~cgi~~~~~~~~~~ 2411 (2435)
.|||+|||||+|+. |+|||+.++. +|.
T Consensus 193 ~WGd~Gy~~i~~~~~n~CgI~~~~~--yp~ 220 (221)
T d1fh0a_ 193 EWGSNGYVKIAKDKNNHCGIATAAS--YPN 220 (221)
T ss_dssp TSTBTTEEEEECSSSSGGGTTTSCE--EEC
T ss_pred CcccCCEEEEEeCCCCccccCCCcc--ccc
Confidence 99999999999986 8999999977 554
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.7e-32 Score=333.83 Aligned_cols=303 Identities=26% Similarity=0.407 Sum_probs=272.7
Q ss_pred ccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCcee
Q psy4869 1038 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1117 (2435)
Q Consensus 1038 ~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~ 1117 (2435)
.|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|++++.+++++..++.+.+|+....+..
T Consensus 15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (317)
T d1vyhc1 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 94 (317)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEE
Q psy4869 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1197 (2435)
Q Consensus 1118 ~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~ 1197 (2435)
..+..|...+..+.|+++++.+++++.|+.+++||++++.....+ ..|...+.+++|++++.+|++++.|+.|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~v~ 168 (317)
T d1vyhc1 95 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF------TGHREWVRMVRPNQDGTLIASCSNDQTVR 168 (317)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE------ccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence 888899999999999999999999999999999999988766554 47899999999999999999999999999
Q ss_pred EEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEE
Q psy4869 1198 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKL 1277 (2435)
Q Consensus 1198 iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~i 1277 (2435)
+|++.+++.+..+..|...+.++.|.|+...+....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------------------------------------- 204 (317)
T d1vyhc1 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISE-------------------------------------------- 204 (317)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG--------------------------------------------
T ss_pred EEeeccceeeEEEecCCCCceEEEEeeccccceeec--------------------------------------------
Confidence 999999999999999999999999987643111000
Q ss_pred EEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCC
Q psy4869 1278 WQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL 1357 (2435)
Q Consensus 1278 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~ 1357 (2435)
........+..++..+++|+.||.|++|++.+++++..+.+|..
T Consensus 205 ------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 248 (317)
T d1vyhc1 205 ------------------------------------ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248 (317)
T ss_dssp ------------------------------------CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred ------------------------------------cccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence 00011122335677899999999999999999999999999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1358 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1358 ~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
+|.+++|+|++++|++|+.||.|++||+++++++..+.+|..+|++|+|+|++.+|+|||.||.|+|||
T Consensus 249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-31 Score=341.37 Aligned_cols=290 Identities=25% Similarity=0.460 Sum_probs=246.7
Q ss_pred ecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeE-----------------EEeeCCCCCeeEEEEccCCCEE
Q psy4869 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENI-----------------GVMSGHTGAVMDLKFSTDGCHI 420 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~-----------------~~l~~h~~~V~~l~~s~dg~~L 420 (2435)
..+|.+.|+||+|+|||++||+|+ |+.|+|||+....... .....|...|++++|+|++++|
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 347999999999999999999987 8999999987543211 1223577889999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECC-
Q psy4869 421 FTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFND- 499 (2435)
Q Consensus 421 ~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp- 499 (2435)
++|+.||.|++||...++.+..+.+|...|.++.+.+++ ..+++++.++.+++||.+...............++.+.+
T Consensus 137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 215 (388)
T d1erja_ 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215 (388)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred eeccccccccccccccccccccccccccccccccccccc-ccccccccceeeeeeeccccccccccccccccccccccCC
Confidence 999999999999999999999999999999999998876 566788999999999999988887777666666666665
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEE-------ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCC-------
Q psy4869 500 TAECVLTGGIDNDIKMWDLRTNSVVQKL-------RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP------- 565 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~s~~~v~~l-------~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~------- 565 (2435)
++++|++|+.||.|++||.+++..+..+ .+|.+.|.+++|+|++++|++++.|+.|++||++....
T Consensus 216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 295 (388)
T d1erja_ 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295 (388)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence 7899999999999999999999887665 36889999999999999999999999999999975321
Q ss_pred -CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEE------cCCCCEE
Q psy4869 566 -GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQF------HPKEPII 638 (2435)
Q Consensus 566 -~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~f------spd~~~L 638 (2435)
...+......|. ..+.+++|+|+|++|++|+.||.|++||+++++++..+.+|.+.|.++++ +|++++|
T Consensus 296 ~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l 371 (388)
T d1erja_ 296 NSGTCEVTYIGHK----DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371 (388)
T ss_dssp ---CEEEEEECCS----SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred cccceeeeccccc----ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEE
Confidence 112233333443 47899999999999999999999999999999999999999999999975 6789999
Q ss_pred EEEECCCcEEEecCC
Q psy4869 639 MSASSDKTIYLGESP 653 (2435)
Q Consensus 639 asgs~Dg~I~vWd~~ 653 (2435)
|+|+.||+|++|+++
T Consensus 372 ~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 372 ATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EEEeCCCEEEEEeee
Confidence 999999999999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.2e-31 Score=329.26 Aligned_cols=290 Identities=21% Similarity=0.390 Sum_probs=252.5
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
.+..+|+||.+.|++++|+|++++||+|+.||.|+|||+.... .+..+..|...|.+++|+|++.+|++++.|+.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce-eEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 3456899999999999999999999999999999999997653 456788999999999999999999999999999999
Q ss_pred ECCCC----ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEE
Q psy4869 433 DLEKG----QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 433 d~~tg----~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sg 507 (2435)
+.... .....+.+|............ ..+.....|.....++.......... .....+....+.+.+.++++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccceecccccccccccccccc--cccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 97654 355667777765554443333 45667788899999988766555444 567788999999999999999
Q ss_pred ecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEE
Q psy4869 508 GIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRC 587 (2435)
Q Consensus 508 s~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v 587 (2435)
+.|+.|++||+++++++..+.+|.+.|++++|+|++++|++++.|+.|++||++. ...+..+.... ....+..+
T Consensus 203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~----~~~~~~~~~~~--~~~~i~~~ 276 (340)
T d1tbga_ 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA----DQELMTYSHDN--IICGITSV 276 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----TEEEEEECCTT--CCSCEEEE
T ss_pred ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc----ccccccccccc--ccCceEEE
Confidence 9999999999999999999999999999999999999999999999999999984 44555554332 23478999
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 588 AWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 588 ~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
+|+|+|++|++|+.||.|++||+.+++++..+.+|.+.|++|+|+|++++|++|+.||.|++||
T Consensus 277 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999997
|
| >d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Cruzain species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=1.8e-34 Score=336.87 Aligned_cols=182 Identities=26% Similarity=0.477 Sum_probs=139.8
Q ss_pred CCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCC
Q psy4869 2175 PETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKG 2254 (2435)
Q Consensus 2175 P~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~ 2254 (2435)
|++||||+ +|+|+||||||.||||| |||+++++|++++++++.
T Consensus 2 P~~~DwR~-----~~~vtpV~dQg~cGsCw--------------------------------Afa~~~~le~~~~i~~~~ 44 (215)
T d1me4a_ 2 PAAVDWRA-----RGAVTAVKDQGQCGSCW--------------------------------AFSAIGNVECQWFLAGHP 44 (215)
T ss_dssp CSEEEGGG-----TTCCCCCCBCTTSSCHH--------------------------------HHHHHHHHHHHHHHTTSC
T ss_pred CCCeeCCC-----CCCCCCCccCCcCccHH--------------------------------HHHHHHHHHHHHHHhcCC
Confidence 89999999 89999999999999999 999999999999999888
Q ss_pred CcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc---CccCCCcccCCCCCccccc-------------
Q psy4869 2255 QVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA---GLVDGGDYGTHDVSMGRYI------------- 2318 (2435)
Q Consensus 2255 ~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~---Gi~~~~~y~~~~~~~~~~~------------- 2318 (2435)
... ||+|+|+ +|.. .+.+|.|+....++.++... |+..+.+|||.........
T Consensus 45 ~~~--ls~q~l~----~c~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ypy~~~~~~~~~~~~~~~~~~~~~~ 113 (215)
T d1me4a_ 45 LTN--LSEQMLV----SCDK-----TDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATIT 113 (215)
T ss_dssp CCC--BCHHHHH----HHCT-----TSCGGGCCCHHHHHHHHHHHSTTEEEBTTTSCCCCTTSCCCCCCCSSCCEEEECC
T ss_pred Ccc--cchhhhh----hhhc-----CCCCCCCCcccccceeeeeccCCccccCcccCccccccccccccccccccceEee
Confidence 766 9999999 7764 24578899988888887653 6889999999765321110
Q ss_pred ---------cCcccceeecccCC-----cccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCc
Q psy4869 2319 ---------EGIGHAASVMGSSN-----PEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGW 2384 (2435)
Q Consensus 2319 ---------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~W 2384 (2435)
..++......+|+. ..+..+..++.. .|. ....+|||+|||||.+ ++++|||||||||++|
T Consensus 114 ~~~~~~~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~~~~~-~~~---~~~~~Hav~IVGyg~~-~~~~ywivrNSWG~~W 188 (215)
T d1me4a_ 114 GHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT-SCV---SEQLDHGVLLVGYNDS-AAVPYWIIKNSWTTQW 188 (215)
T ss_dssp EEEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEEC-SCC---CSCCCEEEEEEEEESS-SSSCEEEEECSBCTTS
T ss_pred eeeeccccHHHHHHHHHhcCceeEEEEeeeeccccccccc-CCc---cccceeEEEEEEcccc-CCceEEEEEcCCCCCc
Confidence 00111111222222 233344443322 222 2246799999999975 7899999999999999
Q ss_pred CCCceEEEEeeCcccccccceeEEE
Q psy4869 2385 GEQGLFKIRRGVNMCSIEDSVMAGE 2409 (2435)
Q Consensus 2385 G~~Gy~~i~r~~n~cgi~~~~~~~~ 2409 (2435)
||+|||||+||+|+||||+++.+++
T Consensus 189 Gd~Gy~~i~~g~n~cgI~~~~~~~~ 213 (215)
T d1me4a_ 189 GEEGYIRIAKGSNQCLVKEEASSAV 213 (215)
T ss_dssp TBTTEEEEESSSCGGGTTSSEEEEE
T ss_pred ccCCEEEEECCCCccccCCceeeEe
Confidence 9999999999999999999998765
|
| >d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Actinidin species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]
Probab=100.00 E-value=9e-35 Score=340.37 Aligned_cols=184 Identities=26% Similarity=0.435 Sum_probs=141.2
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +++|+||||||.||||| |||+++++|++++++++
T Consensus 1 LP~~~Dwr~-----~~~itpV~dQg~cGsCw--------------------------------AfA~~~~~e~~~~~~~~ 43 (218)
T d1aeca_ 1 LPSYVDWRS-----AGAVVDIKSQGECGGCW--------------------------------AFSAIATVEGINKIVTG 43 (218)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCceeCCC-----CCCCCCCccCCCChhHH--------------------------------HHHHHHHHHHHHHHhcC
Confidence 899999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcC-ccCCCcccCCCCCcccc---------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAG-LVDGGDYGTHDVSMGRY--------------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~G-i~~~~~y~~~~~~~~~~--------------- 2317 (2435)
.... ||+|+++ +|... ..+.+|.|+....++.+++++| +..|.+|||........
T Consensus 44 ~~~~--lS~q~~~----~c~~~---~~~~~~~G~~~~~~~~~~~~~g~v~~e~~yp~~~~~~~~~~~~~~~~~~~~~~~~ 114 (218)
T d1aeca_ 44 VLIS--LSEQELI----DCGRT---QNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYE 114 (218)
T ss_dssp CCCC--BCHHHHH----HHCCB---TTBCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCHHHHHCCCBCCCEEE
T ss_pred CCcc--hhhhhhh----hhccc---cCCcccCCCcccccceeehhCceecCccccCcccccCccceeccccccceecccc
Confidence 8766 9999999 76642 2345799999999999999986 88999999976532211
Q ss_pred -----ccCcccceeecccCCcccccc-------eeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2318 -----IEGIGHAASVMGSSNPEVNNF-------EKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2318 -----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
...+.......+|+.+.+..+ ..++....+ ....+|||+|||||++ ++++|||||||||+.||
T Consensus 115 ~~~~~~~~~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~~~~----~~~~~Hav~iVGyg~~-~~~~ywivrNSWG~~WG 189 (218)
T d1aeca_ 115 NVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPC----GTAIDHAVTIVGYGTE-GGIDYWIVKNSWDTTWG 189 (218)
T ss_dssp ECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCSC----CSSCCEEEEEEEEEEE-TTEEEEEEECSBCTTST
T ss_pred cccccHHHHHHHHhhcCCceeEEEecchhhhcCCCCcccccc----cccCCceeEEEEEecc-CCeEEEEEEcCCCCCcc
Confidence 001111222234443333322 222221111 2345799999999975 78899999999999999
Q ss_pred CCceEEEEee---CcccccccceeEE
Q psy4869 2386 EQGLFKIRRG---VNMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~---~n~cgi~~~~~~~ 2408 (2435)
|+|||||+|+ .|+|||+.+++++
T Consensus 190 d~Gy~~i~~~~~~~~~Cgi~~~~~~~ 215 (218)
T d1aeca_ 190 EEGYMRILRNVGGAGTCGIATMPSYP 215 (218)
T ss_dssp BTTEEEEECCCSTTCGGGTTSSCEEE
T ss_pred cCCEEEEEeCCCCCcccccCCcceec
Confidence 9999999995 5899999998753
|
| >d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: (Pro)cathepsin X species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-34 Score=351.18 Aligned_cols=198 Identities=26% Similarity=0.443 Sum_probs=148.7
Q ss_pred CCCCCCCCCCccccCccCCCCCCCcccccCCC---CCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHh
Q psy4869 2167 SNQTDEAIPETFDAREEWPQCKDVIGKVWDQG---ACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASV 2243 (2435)
Q Consensus 2167 ~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg---~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~ 2243 (2435)
......+||++||||+++. .++++|||||| .||||| |||++++
T Consensus 27 ~~~~~~~LP~~~DwR~~~~--~~~~tpvkdQG~~~~CGsCW--------------------------------AfAa~~~ 72 (275)
T d1deua_ 27 EYLSPADLPKSWDWRNVDG--VNYASITRNQHIPQYCGSCW--------------------------------AHASTSA 72 (275)
T ss_dssp CCCCGGGSCSCEETTSBTT--BCCCCCCCBTTCSSCCBCHH--------------------------------HHHHHHH
T ss_pred ccCCcccCCCccccCcCCC--cCCCCCcccCCCCCCCcCHH--------------------------------HHHHHHH
Confidence 3344567999999999432 45789999998 699999 9999999
Q ss_pred hhhhhhhhcCCCcC-ccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcccc-----
Q psy4869 2244 MSDRICIQSKGQVK-PILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRY----- 2317 (2435)
Q Consensus 2244 ~e~~~~~~~~~~~~-~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~----- 2317 (2435)
+|+++++++++... ..||+|+|+ +|.. +.||.||++..+++|+.++|+++|.+|||........
T Consensus 73 lE~~~~i~~~~~~~~~~lS~q~l~----~~~~------~~~c~GG~~~~a~~~~~~~G~~~e~~~PY~~~~~~~~~~~~~ 142 (275)
T d1deua_ 73 MADRINIKRKGAWPSTLLSVQNVI----DCGN------AGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQC 142 (275)
T ss_dssp HHHHHHHHTTTCSSCCCBCHHHHH----HHSS------SEETBEECHHHHHHHHHHTCBCBGGGSCCCSSCCCCCHHHHS
T ss_pred HHHHHHHHcCCcccccccchhhee----cccc------ccccCCcccccccchhhcccccccccccccccCCCccccccc
Confidence 99999998776543 349999999 5543 2479999999999999999999999999964421100
Q ss_pred ----------------------------ccCcccceeecccCCcc------cccceeeEEEEecCCCcCcccceEEEEEE
Q psy4869 2318 ----------------------------IEGIGHAASVMGSSNPE------VNNFEKVIRLYSCEGSINPRYIHSVKIIG 2363 (2435)
Q Consensus 2318 ----------------------------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Hav~iVG 2363 (2435)
.+.++..+...+|+.+. +..|.+++....|. ...++|||+|||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~e~ik~~l~~~GPv~v~~~~~~~f~~y~~Gi~~~~~~---~~~~~HAV~IVG 219 (275)
T d1deua_ 143 GTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQD---TTYINHVVSVAG 219 (275)
T ss_dssp EEEEETTEEEECSSCCCBCEEEEEEECSHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEECBCCS---CCCCCEEEEEEE
T ss_pred CcccccceeeeccceeEEEeCceeecCcHHHHHHHHHhCCCcEEEEEeccchhccCCCcccCccc---cccCCeEEEEEE
Confidence 00011122233444333 34444444332222 234689999999
Q ss_pred eccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccc--------cccceeEEEeec
Q psy4869 2364 WGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCS--------IEDSVMAGEAKL 2412 (2435)
Q Consensus 2364 yg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cg--------i~~~~~~~~~~~ 2412 (2435)
||++ +|++|||||||||++|||+|||||+|+.|+|| ||+.+++++|.+
T Consensus 220 yg~~-~g~~ywivrNSWG~~WGd~Gyf~I~~~~~~~~~~~~~~~~ie~~~~~~~p~~ 275 (275)
T d1deua_ 220 WGIS-DGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV 275 (275)
T ss_dssp EEEE-TTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTTSCEEEEEECC
T ss_pred Eecc-CCcEEEEEECCCCCCcccCCEEEEECCCCCCCccccccccccCccEecCCcC
Confidence 9975 78999999999999999999999999976665 999999999964
|
| >d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Vignain (bean endopeptidase) species: Castor bean (Ricinus communis) [TaxId: 3988]
Probab=100.00 E-value=2.4e-34 Score=338.32 Aligned_cols=190 Identities=25% Similarity=0.478 Sum_probs=144.7
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
.||++||||+ +|+|+||||||.||||| |||+++++|++++++.
T Consensus 1 ~lP~~~Dwr~-----~~~itpV~dQG~cGsCw--------------------------------AfA~~~~~e~~~~~~~ 43 (224)
T d1s4va_ 1 TVPASVDWRK-----KGAVTSVKDQGQCGSCW--------------------------------AFSTIVAVEGINQIKT 43 (224)
T ss_dssp CCCSCEETTT-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCceeCCC-----CCCCCCCccCCcCchHH--------------------------------HHHHHHHHHHHHHHhc
Confidence 3899999999 89999999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcC-ccCCCcccCCCCCcccc--------------
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAG-LVDGGDYGTHDVSMGRY-------------- 2317 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~G-i~~~~~y~~~~~~~~~~-------------- 2317 (2435)
+.... ||+|+|+ +|... ...+|.||....|+.+++++| ++.+.+|+|........
T Consensus 44 ~~~~~--~S~q~l~----~c~~~----~~~~~~G~~~~~a~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (224)
T d1s4va_ 44 NKLVS--LSEQELV----DCDTD----QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGH 113 (224)
T ss_dssp SCCCC--BCHHHHH----HHCCS----SCCTTBCBCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCHHHHTCCCBCCCEE
T ss_pred CCCCc--cchhhhh----hcccc----ccccCCCCchhhHhhhHhhcCceeecccccccCcCCccccccccccceeeccc
Confidence 87766 9999999 77642 235689999999999998885 66677776654321110
Q ss_pred -------ccCc------ccceeecccCCcccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCc
Q psy4869 2318 -------IEGI------GHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGW 2384 (2435)
Q Consensus 2318 -------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~W 2384 (2435)
...+ .+++.........+..|..++....+ ....+|||+|||||.+.++++|||||||||++|
T Consensus 114 ~~~~~~~~~~~k~~l~~~pv~~~~~~~~~~~~~y~~g~~~~~~----~~~~~Hav~iVGy~~~~~g~~ywiikNSWG~~W 189 (224)
T d1s4va_ 114 ENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSC----GTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEW 189 (224)
T ss_dssp EECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCC----CCCCCEEEEEEEEEECTTSCEEEEEECSBCTTS
T ss_pred ccccCccHHHHHHHHhcCCceEEEEecchhhhhccCCCccCcc----cccCCcceEEEecccccCCceEEEEEcCCCCcc
Confidence 0000 11222222223345566555443222 234579999999998778999999999999999
Q ss_pred CCCceEEEEeeC----cccccccceeEEEeecC
Q psy4869 2385 GEQGLFKIRRGV----NMCSIEDSVMAGEAKLE 2413 (2435)
Q Consensus 2385 G~~Gy~~i~r~~----n~cgi~~~~~~~~~~~~ 2413 (2435)
||+|||||+||. |+|||+..+.+++|+-+
T Consensus 190 G~~Gy~~i~~g~~~~~n~CgI~~~~~yp~~~~~ 222 (224)
T d1s4va_ 190 GEKGYIRMERGISDKEGLCGIAMEASYPIKKSS 222 (224)
T ss_dssp TBTTEEEEECSCSSTTCGGGTTSSCEEEECCSS
T ss_pred ccCceEEEECCCCCCCCcCCccceeeeeeccCC
Confidence 999999999974 78999999987766644
|
| >d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Papain species: Papaya (Carica papaya) [TaxId: 3649]
Probab=100.00 E-value=4.6e-34 Score=333.11 Aligned_cols=177 Identities=29% Similarity=0.492 Sum_probs=138.9
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +++|+||||||.||||| |||+++++|++++++++
T Consensus 1 LP~~~D~R~-----~~~v~pV~dQg~cGsCw--------------------------------Afa~~~~~e~~~~i~~~ 43 (212)
T d1khqa_ 1 IPEYVDWRQ-----KGAVTPVKNQGSCGSCW--------------------------------AFSAVVTIEGIIKIRTG 43 (212)
T ss_dssp CCSCEETTT-----TTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCCeeCCC-----CCCCCCcccCCcCchHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 799999999 88999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcccccc--------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYIE-------------- 2319 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~~-------------- 2319 (2435)
.... ||+|+++ ||.. ...||.|+++..|++|+.++|+++|..|||..........
T Consensus 44 ~~~~--~S~q~~~----~c~~-----~~~g~~g~~~~~a~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (212)
T d1khqa_ 44 NLNE--YSEQELL----DCDR-----RSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQ 112 (212)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCBCHHHHHHHHHHTCBCBTTTSCCCSSCCCCCTTTTCSCSBCCCEEEE
T ss_pred CCcc--cCHHHhh----cccc-----ccCccccccccccccccccccccccccCCcccccCcccccccccceeeeeeeee
Confidence 7766 9999999 7865 2357999999999999999999999999997653211000
Q ss_pred -------------CcccceeecccCCcccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCC
Q psy4869 2320 -------------GIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGE 2386 (2435)
Q Consensus 2320 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~ 2386 (2435)
..+++..........+..++.++....+ ...++|||+|||||+ +|||||||||++|||
T Consensus 113 ~~~~~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~g~~~~~~----~~~~~Hav~iVGyg~-----~ywivrNSWG~~WGd 183 (212)
T d1khqa_ 113 VQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPC----GNKVDHAVAAVGYGP-----NYILIKNSWGTGWGE 183 (212)
T ss_dssp CCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCSC----CSCCCEEEEEEEEET-----TEEEEECSBCTTSTB
T ss_pred eccccHHHHHHHHhcCCcEEEEEeecchhcccccCcccccc----ccccCeEEEecccCC-----cEEEEEcCCCCCccc
Confidence 0011222222233344555554432221 224689999999995 499999999999999
Q ss_pred CceEEEEeeC----cccccccceeE
Q psy4869 2387 QGLFKIRRGV----NMCSIEDSVMA 2407 (2435)
Q Consensus 2387 ~Gy~~i~r~~----n~cgi~~~~~~ 2407 (2435)
+|||||+||. |+|||++.++.
T Consensus 184 ~Gy~~i~~~~~~~~~~Cgi~~~~~~ 208 (212)
T d1khqa_ 184 NGYIRIKRGTGNSYGVCGLYTSSFY 208 (212)
T ss_dssp TTEEEEECCSCCTTCGGGTTSCCEE
T ss_pred CCEEEEEcCCCCCCCcCCcccEeee
Confidence 9999999987 67999999875
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.8e-31 Score=329.92 Aligned_cols=344 Identities=21% Similarity=0.428 Sum_probs=266.9
Q ss_pred EEEecCCCCCE-EEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEE
Q psy4869 110 ISTFTGHKSAI-TVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIW 188 (2435)
Q Consensus 110 ~~~l~gH~~~V-~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iW 188 (2435)
..+|+||.+.| +|++| +|++||||+.||+|+|||+.+++.+.++.+|.++|++|+|+| + .+|++++.|++|++|
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~--~-~~l~s~s~D~~i~iw 79 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--G-GILVSGSTDRTVRVW 79 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET--T-TEEEEEETTCCEEEE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC--C-CEEEEEecccccccc
Confidence 46799998875 77776 478999999999999999999999999999999999999975 2 479999999999999
Q ss_pred eccCCcccccccc--ccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeee
Q psy4869 189 DADTGDCFKTMAA--HLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSK 266 (2435)
Q Consensus 189 d~~tg~~~~~~~~--h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 266 (2435)
++..+++...... +........+.+++.++++++.|+.|++||++............ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~---------------~----- 139 (355)
T d1nexb2 80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH---------------D----- 139 (355)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC--------------------------C-----
T ss_pred cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccc---------------e-----
Confidence 9999987665543 33445566677888899999999999999998653221100000 0
Q ss_pred EEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeeccccc
Q psy4869 267 IEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVG 346 (2435)
Q Consensus 267 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 346 (2435)
.. .....
T Consensus 140 ---------------~~-------------------------------------------~~~~~--------------- 146 (355)
T d1nexb2 140 ---------------YP-------------------------------------------LVFHT--------------- 146 (355)
T ss_dssp ---------------CC-------------------------------------------EEESC---------------
T ss_pred ---------------ec-------------------------------------------cceec---------------
Confidence 00 00000
Q ss_pred CccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC
Q psy4869 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD 426 (2435)
Q Consensus 347 ~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 426 (2435)
.............|...+.+. .+++++++++..|+.|++||+.... ......++...+..+.|++++.++++++.|
T Consensus 147 -~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 222 (355)
T d1nexb2 147 -PEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHERKRCISASMD 222 (355)
T ss_dssp -TTTCTTEEEEEECCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred -cccccceeeeeeecccccccc--ccccceeeeecccceeeeeeccccc-ceeeeeccccccccccccccceeeeccccc
Confidence 000001112334566666554 4578999999999999999997653 456677889999999999999999999999
Q ss_pred CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEE
Q psy4869 427 QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLT 506 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~s 506 (2435)
+.|++||++++..+..+++|...|.++.+.+ .++++++.||.|++||+++........+........++++++++++
T Consensus 223 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (355)
T d1nexb2 223 TTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVS 299 (355)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEE
T ss_pred ceEEeeecccccccccccccccccccccccc---ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEE
Confidence 9999999999999999999999999998764 4789999999999999998876665544444444456777777766
Q ss_pred EecCCeEEEEECCCCcEEE-EEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q psy4869 507 GGIDNDIKMWDLRTNSVVQ-KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560 (2435)
Q Consensus 507 gs~dg~V~lwD~~s~~~v~-~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl 560 (2435)
| .||.|++||+++++++. .+.+|.+.|.+++|+|+ .++++++.||+++||.+
T Consensus 300 g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 300 G-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp E-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred E-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 5 58999999999999885 46789999999999986 57888999999887765
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.2e-31 Score=334.57 Aligned_cols=313 Identities=26% Similarity=0.392 Sum_probs=257.8
Q ss_pred EEECCCcEEEEEcCCCe----EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe-----------
Q psy4869 1057 VSLLDTTVKIFFLDTFK----FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL----------- 1121 (2435)
Q Consensus 1057 vg~~dg~V~i~d~~~~~----~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~----------- 1121 (2435)
.+..++...+|+....+ .+....+|.+.|++|+|+|||++|++|+ |+.|+|||+.+++.+..+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------
T ss_pred ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccc
Confidence 34456677778754322 1223346999999999999999999986 8999999999998776654
Q ss_pred -------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCC
Q psy4869 1122 -------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDR 1194 (2435)
Q Consensus 1122 -------~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg 1194 (2435)
.|...|.+++|+|++++|++|+.|+.|++||...++..... .+|...|.++++++++..+++++.++
T Consensus 112 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~~ 185 (388)
T d1erja_ 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL------QGHEQDIYSLDYFPSGDKLVSGSGDR 185 (388)
T ss_dssp -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccc------ccccccccccccccccccccccccce
Confidence 35667999999999999999999999999999987765544 48999999999999999999999999
Q ss_pred cEEEEEccCCceeeEeeccCCCEEEEEEee-CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCC
Q psy4869 1195 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDK 1273 (2435)
Q Consensus 1195 ~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp-d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~ 1273 (2435)
.|++||.++.........+.. ..++.+.+ ++++|++++.||.|++||.++...+..+.....
T Consensus 186 ~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~---------------- 248 (388)
T d1erja_ 186 TVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE---------------- 248 (388)
T ss_dssp EEEEEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------------
T ss_pred eeeeeeccccccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccc----------------
Confidence 999999998887766655554 45555555 889999999999999999988766544321100
Q ss_pred eEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccc-------
Q psy4869 1274 SVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF------- 1346 (2435)
Q Consensus 1274 ~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~------- 1346 (2435)
....+...|.+++|+|++++|++|+.||.|++||+..+
T Consensus 249 -----------------------------------~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 293 (388)
T d1erja_ 249 -----------------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293 (388)
T ss_dssp -------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred -----------------------------------cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccc
Confidence 01124567999999999999999999999999999753
Q ss_pred -----eEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEE------eeCCCEEEE
Q psy4869 1347 -----KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTF------VPKTHYFFT 1415 (2435)
Q Consensus 1347 -----k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf------~P~~~~laS 1415 (2435)
........|...|.+++|+|+|++|++|+.||.|++||+++++++..+++|.+.|+++++ +|++.+|||
T Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s 373 (388)
T d1erja_ 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373 (388)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred cccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEE
Confidence 345566688999999999999999999999999999999999999999999999999985 678999999
Q ss_pred EeCCCcEEEEECC
Q psy4869 1416 TSKDGRVKQWDAD 1428 (2435)
Q Consensus 1416 gg~Dg~V~lWd~~ 1428 (2435)
||.||.|+|||++
T Consensus 374 ~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 374 GSGDCKARIWKYK 386 (388)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCEEEEEeee
Confidence 9999999999984
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.9e-31 Score=327.07 Aligned_cols=279 Identities=19% Similarity=0.293 Sum_probs=235.9
Q ss_pred EEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCee--EEEEe
Q psy4869 79 CQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG--LHRLS 156 (2435)
Q Consensus 79 ~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~--~~~l~ 156 (2435)
..++++|+|.++|.+ .++.+.+|++++++....|.+|++.|++++|+|+|++||+|+.||+|+|||+..... ...+.
T Consensus 21 ~~~a~~~~g~~l~~~-~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~ 99 (311)
T d1nr0a1 21 VVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 99 (311)
T ss_dssp CCCEECTTSSEEEEE-ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE
T ss_pred EEEEEcCCCCEEEEE-eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccc
Confidence 368899999999988 567799999999999999999999999999999999999999999999999988663 45688
Q ss_pred cCCCcEEEEEEeecCCCcEEEEEeC--CCcEEEEeccCCccccccccccceEEEEEEEeCCCe-EEEeeCCCcEEEEEcC
Q psy4869 157 GHKGVITDIRFMSQPGHHFVVSSAK--DTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSY-LISGSNDAELKVWNVR 233 (2435)
Q Consensus 157 gH~~~V~~v~~~~~~~~~~l~S~s~--Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~-l~s~s~Dg~v~vwdl~ 233 (2435)
+|.++|.+++|+| ++.+|++++. |..++|||+++++...++.+|.+.|.+++|+|++++ |++|+.|+.|++||++
T Consensus 100 ~~~~~v~~v~~s~--d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~ 177 (311)
T d1nr0a1 100 VFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 177 (311)
T ss_dssp CSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred cccCccccccccc--cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc
Confidence 9999999999985 4567777765 567999999999999999999999999999999886 7789999999999987
Q ss_pred CCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhh
Q psy4869 234 DRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQ 313 (2435)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (2435)
+.+
T Consensus 178 ~~~----------------------------------------------------------------------------- 180 (311)
T d1nr0a1 178 PFK----------------------------------------------------------------------------- 180 (311)
T ss_dssp TBE-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 421
Q ss_pred hhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC
Q psy4869 314 ELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG 393 (2435)
Q Consensus 314 ~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~ 393 (2435)
....+.+|...|+++.|+|++++|++|+.||.|++||...
T Consensus 181 ----------------------------------------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~ 220 (311)
T d1nr0a1 181 ----------------------------------------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220 (311)
T ss_dssp ----------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ----------------------------------------cccccccccccccccccCcccccccccccccccccccccc
Confidence 0013457889999999999999999999999999999876
Q ss_pred ceeeEE------EeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccc-cccCcccCCCeEEEEE
Q psy4869 394 ECENIG------VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFV-NSCDPVRRGQLLIASG 466 (2435)
Q Consensus 394 ~~~~~~------~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v-~sv~~~~~~~~llasg 466 (2435)
...... ...+|.+.|.+++|+|++++|++|+.||.|+|||+++++.++.+..|.... ..+.+.+.+ ..++++
T Consensus 221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~-~~l~s~ 299 (311)
T d1nr0a1 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK-QALVSI 299 (311)
T ss_dssp CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS-SCEEEE
T ss_pred ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecC-CEEEEE
Confidence 432211 124689999999999999999999999999999999999999998775422 222333333 357788
Q ss_pred eCCCeEEEEeCC
Q psy4869 467 SDDCTVKVWDPR 478 (2435)
Q Consensus 467 s~Dg~I~vwD~~ 478 (2435)
+.||.|++||++
T Consensus 300 s~dG~i~~wd~d 311 (311)
T d1nr0a1 300 SANGFINFVNPE 311 (311)
T ss_dssp ETTCCEEEEETT
T ss_pred ECCCEEEEEeCC
Confidence 999999999974
|
| >d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Ervatamin C species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]
Probab=100.00 E-value=1.5e-33 Score=327.41 Aligned_cols=177 Identities=28% Similarity=0.566 Sum_probs=137.8
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +++|+||||||.||||| |||+++++|++++++.+
T Consensus 1 LP~~~D~R~-----~~~vtpV~dQg~cGsCw--------------------------------AfA~~~~le~~~~~~~~ 43 (208)
T d1o0ea_ 1 LPEQIDWRK-----KGAVTPVKNQGSCGSCW--------------------------------AFSTVSTVESINQIRTG 43 (208)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcccCcc-----CCCCCCcccCCCCccHH--------------------------------HHHHHHHHHHHHHHHhC
Confidence 899999999 88999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcC-ccCCCcccCCCCCcccccc-------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAG-LVDGGDYGTHDVSMGRYIE------------- 2319 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~G-i~~~~~y~~~~~~~~~~~~------------- 2319 (2435)
..+. ||+|+|+ +|.. .+.+|.||.+..+++|++.+| ...+.+|||......+...
T Consensus 44 ~~~~--lS~q~l~----~c~~-----~~~~~~g~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (208)
T d1o0ea_ 44 NLIS--LSEQELV----DCDK-----KNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSIDGYNGVP 112 (208)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCCCCCCBCCCEEEECC
T ss_pred CCCC--cCHHHhh----hhcc-----CCCCCCCccchhhhhhhhhcCccccccCCCCcccCCCccCcccccccccccccc
Confidence 8776 9999999 7764 345799999999999999886 5677788886543221100
Q ss_pred -----------CcccceeecccCCcccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCc
Q psy4869 2320 -----------GIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG 2388 (2435)
Q Consensus 2320 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~G 2388 (2435)
..++++..+..+...+..+..++..+.++. ..+|||+|||||+ +|||||||||++|||+|
T Consensus 113 ~~~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~gi~~~~~~~----~~~Hav~iVGy~~-----~ywiirNSWG~~WGd~G 183 (208)
T d1o0ea_ 113 FCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGT----KLNHGVTIVGYQA-----NYWIVRNSWGRYWGEKG 183 (208)
T ss_dssp TTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCCS----CCCEEEEEEEECS-----SEEEEECSBCTTSTBTT
T ss_pred cchhhHHHHHhhcCCceEEEEecchhhcccccCcccccccc----cCCcEEEEEeeec-----ceEEEECCCCCCcccCC
Confidence 011223333334445555665544333222 3579999999984 49999999999999999
Q ss_pred eEEEEe--eCcccccccceeE
Q psy4869 2389 LFKIRR--GVNMCSIEDSVMA 2407 (2435)
Q Consensus 2389 y~~i~r--~~n~cgi~~~~~~ 2407 (2435)
||||+| +.|.|||++.+.+
T Consensus 184 y~~I~~~~~~~~Cgi~~~~~~ 204 (208)
T d1o0ea_ 184 YIRMLRVGGCGLCGIARLPYY 204 (208)
T ss_dssp EEEEECCSTTCGGGTTSSCEE
T ss_pred eEEEEccCCCCccCcccccee
Confidence 999999 4589999998773
|
| >d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Ervatamin B species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]
Probab=99.98 E-value=1.1e-33 Score=330.29 Aligned_cols=182 Identities=26% Similarity=0.483 Sum_probs=136.2
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +++|+||||||.||||| |||++++||++++++.+
T Consensus 1 LP~s~Dwr~-----~~~v~pV~dQg~cGsCw--------------------------------AfA~~~~le~~~~~~~~ 43 (215)
T d1iwda_ 1 LPSFVDWRS-----KGAVNSIKNQKQCGSCW--------------------------------AFSAVAAVESINKIRTG 43 (215)
T ss_dssp CCSCEEGGG-----GTCSCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCceeCCc-----CCCCCCCccCCCCchHH--------------------------------HHHHHHHHHHHHHHhcC
Confidence 899999999 88999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccC-CCcccCCCCCcccc---------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVD-GGDYGTHDVSMGRY--------------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~-~~~y~~~~~~~~~~--------------- 2317 (2435)
.... ||+|+|+ +|... ..||.||....|++|++++|.+. +.++||........
T Consensus 44 ~~~~--lS~q~l~----~c~~~-----~~~~~G~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (215)
T d1iwda_ 44 QLIS--LSEQELV----DCDTA-----SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRV 112 (215)
T ss_dssp CCCC--BCHHHHH----HHCTT-----SCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCTTCCCCBCCCEEEEC
T ss_pred CCcc--cChhhhe----ecccC-----CCCCCCcchhhHHHHHHhcCeeccccCCCcccccccccccccceeEecccccc
Confidence 7655 9999999 77642 35799999999999999997554 55556644321110
Q ss_pred ----------ccCcccceeecccCCcccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCC
Q psy4869 2318 ----------IEGIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQ 2387 (2435)
Q Consensus 2318 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~ 2387 (2435)
+....++..........+..+..++....++ ...+|||+|||||++ ++++|||||||||++|||+
T Consensus 113 ~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~g~~~~~~~----~~~~Hav~iVGyg~~-~~~~ywiirNSWG~~WGd~ 187 (215)
T d1iwda_ 113 TRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCG----TAQNHGVVIVGYGTQ-SGKNYWIVRNSWGQNWGNQ 187 (215)
T ss_dssp CTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCC----CCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBT
T ss_pred CccHHHHHHHHHhcCCccceeeecchhhhccccCccccccc----ccccceEEEEEeecC-CCceEEEEECCCCcccccC
Confidence 0001122222222333344444443322222 235799999999975 7889999999999999999
Q ss_pred ceEEEEeeC----cccccccceeEE
Q psy4869 2388 GLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2388 Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
|||||+|+. |+|||+..+.+.
T Consensus 188 Gy~~I~~~~~~~~~~CGi~~~~~~p 212 (215)
T d1iwda_ 188 GYIWMERNVASSAGLCGIAQLPSYP 212 (215)
T ss_dssp TEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred CEEEEECCCCCCCCcCCccccceee
Confidence 999999986 689999887643
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=1.4e-30 Score=322.98 Aligned_cols=289 Identities=16% Similarity=0.183 Sum_probs=246.0
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCcee--
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH-- 1117 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~-- 1117 (2435)
.+.+.+++++|+|+.|+.+. ++.|.+|++++.+....+.+|...|++++|+|+|++|++|+.||.|++||+..++..
T Consensus 17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~ 95 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 95 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence 45667889999999999986 678999999999988899999999999999999999999999999999999887643
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCE-EEEEeCCC
Q psy4869 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTL-IATGSGDR 1194 (2435)
Q Consensus 1118 ~~l~~h~~~V~~v~fsp~~~~l~s~s~--Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~-l~sgs~Dg 1194 (2435)
..+..|...|.+++|+|++++|++++. +..+++|++++.+....+ .+|...|.+++|+|++.+ |++|+.|+
T Consensus 96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l------~~h~~~v~~v~~~~~~~~~l~sgs~d~ 169 (311)
T d1nr0a1 96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL------TGQARAMNSVDFKPSRPFRIISGSDDN 169 (311)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC------CCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred cccccccCccccccccccccccccccccccccccccccccccccccc------cccccccccccccccceeeeccccccc
Confidence 557789999999999999999998875 456999999987765543 578999999999998874 78899999
Q ss_pred cEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCe
Q psy4869 1195 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKS 1274 (2435)
Q Consensus 1195 ~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~ 1274 (2435)
.|++||+++++....+..|..+|.++.|+|++++|++++.|+.|++||.+....+..+....
T Consensus 170 ~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~------------------ 231 (311)
T d1nr0a1 170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS------------------ 231 (311)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccc------------------
Confidence 99999999999999999999999999999999999999999999999987755432211000
Q ss_pred EEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC
Q psy4869 1275 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG 1354 (2435)
Q Consensus 1275 v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~ 1354 (2435)
....+
T Consensus 232 ---------------------------------------------------------------------------~~~~~ 236 (311)
T d1nr0a1 232 ---------------------------------------------------------------------------LKNVA 236 (311)
T ss_dssp ---------------------------------------------------------------------------SSSCS
T ss_pred ---------------------------------------------------------------------------ccccc
Confidence 01235
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeccccc-ceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1355 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1355 h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~-~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
|.++|.+++|+|++++|++|+.||.|+|||++++++++.+..|.. ....+.+.+++..|++++.||.|++||++
T Consensus 237 h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred ccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 778899999999999999999999999999999999998876643 23334455566689999999999999975
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.9e-29 Score=314.15 Aligned_cols=294 Identities=20% Similarity=0.284 Sum_probs=257.9
Q ss_pred CeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q psy4869 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1151 (2435)
Q Consensus 1072 ~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iw 1151 (2435)
.+..++++||.++|++|+|+|++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++.++++++.|+.+++|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEE
Q psy4869 1152 DADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1152 D~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvs 1231 (2435)
+.......... ...+.+|.......... .+..+.....|.....++............+...+....+.+....+++
T Consensus 125 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 125 NLKTREGNVRV--SRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ESSSSCSCCCE--EEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccccccccccc--ceecccccccccccccc-cccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence 98765443322 22344666666655554 4567788889999999999888877778888999999999999999999
Q ss_pred EECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccc
Q psy4869 1232 TSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311 (2435)
Q Consensus 1232 gs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1311 (2435)
++.|+.|++||+++.+.+..+.
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~~---------------------------------------------------------- 223 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTFT---------------------------------------------------------- 223 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEEC----------------------------------------------------------
T ss_pred eecCceEEEEECCCCcEEEEEe----------------------------------------------------------
Confidence 9999999999998766543321
Q ss_pred cccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q psy4869 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY--GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1389 (2435)
Q Consensus 1312 ~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~--~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk 1389 (2435)
.+...|.+++|+|++++|++|+.||.|++|++...+.+..+. .+..+|..++|+|++++|++|+.||.|++||+.+++
T Consensus 224 ~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 303 (340)
T d1tbga_ 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC
T ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc
Confidence 124568999999999999999999999999999988776664 666789999999999999999999999999999999
Q ss_pred eEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1390 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1390 ~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
++..+.+|.++|++|+|+|++.+|+|||.||.|+|||
T Consensus 304 ~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999999999999999999999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-29 Score=313.90 Aligned_cols=326 Identities=27% Similarity=0.520 Sum_probs=262.8
Q ss_pred EECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeC
Q psy4869 102 FSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAK 181 (2435)
Q Consensus 102 ~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~ 181 (2435)
|+..+.++...|+||++.|.+ +++++|++|||||.||+|+|||+.++++++++.+|.+.|.+++|++ .+|++++.
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~ 75 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGST 75 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEET
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Ccccccee
Confidence 445566788899999998854 2555799999999999999999999999999999999999999974 38999999
Q ss_pred CCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCC
Q psy4869 182 DTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPD 261 (2435)
Q Consensus 182 Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (2435)
|+.+++|+............+...+.... .....++.+..|+.+.+|+.+.++....
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~--------------------- 132 (342)
T d2ovrb2 76 DRTLKVWNAETGECIHTLYGHTSTVRCMH--LHEKRVVSGSRDATLRVWDIETGQCLHV--------------------- 132 (342)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEE--EETTEEEEEETTSEEEEEESSSCCEEEE---------------------
T ss_pred cccccccccccccceecccccceeEeeee--cccccccccccceeEEEeecccccceee---------------------
Confidence 99999999998877766666666665443 3456788999999999999875421000
Q ss_pred ceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeee
Q psy4869 262 LTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKV 341 (2435)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~ 341 (2435)
T Consensus 133 -------------------------------------------------------------------------------- 132 (342)
T d2ovrb2 133 -------------------------------------------------------------------------------- 132 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEE
Q psy4869 342 QKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIF 421 (2435)
Q Consensus 342 ~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~ 421 (2435)
+..+... ...+.+...+++.++.|+.|++||.... .....+.+|...+..+.+ ++.+|+
T Consensus 133 ----------------~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~l~ 191 (342)
T d2ovrb2 133 ----------------LMGHVAA--VRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVV 191 (342)
T ss_dssp ----------------EECCSSC--EEEEEECSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEE
T ss_pred ----------------eeccccc--ceeeccccceeeeecCCCeEEEeecccc-eeeEEEcCcccccccccC--CCCEEE
Confidence 0000000 0112234567889999999999998754 345667888877776655 678999
Q ss_pred EEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec----CcccEEEEEE
Q psy4869 422 TCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN----NTYQVTSVAF 497 (2435)
Q Consensus 422 s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~----~~~~v~sv~~ 497 (2435)
+++.||.|++||++.++.+..+.+|...+.++.+.+ .++++++.|+.|++||+...+....+. +...+.++.+
T Consensus 192 s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (342)
T d2ovrb2 192 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 268 (342)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE
T ss_pred EEeCCCeEEEeecccceeeeEecccccceeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc
Confidence 999999999999999999999999999998887654 478999999999999999887766653 4456666666
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEEe-----cCCCCEEEEEEcCCCCEEEEEECCCc----EEEEEcC
Q psy4869 498 NDTAECVLTGGIDNDIKMWDLRTNSVVQKLR-----GHSDTVTGLSLSPDGSYILSNAMDNT----VRIWDIR 561 (2435)
Q Consensus 498 sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~-----~h~~~V~~i~~spdg~~las~s~Dg~----I~lWdl~ 561 (2435)
+ ++++++|+.||.|++||+++++.++.+. +|.+.|++++|+|++.+|++|+.||+ |++||+.
T Consensus 269 ~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 269 N--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp C--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred C--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 5 5799999999999999999999998874 57888999999999999999999986 9999986
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.8e-29 Score=321.18 Aligned_cols=304 Identities=19% Similarity=0.203 Sum_probs=241.5
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc--eeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcce
Q psy4869 1081 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD--CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1158 (2435)
Q Consensus 1081 h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~--~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~ 1158 (2435)
+..+|+|++|+||+++||+|+.||.|++||+..++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+...
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 45789999999999999999999999999998775 5677889999999999999999999999999999999987654
Q ss_pred eEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcee----eEeeccCCCEEEEEEeeCCCEEEEEEC
Q psy4869 1159 IVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH----KSLLAHEDSVTGVTFVPKTHYFFTTSK 1234 (2435)
Q Consensus 1159 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~----~~~~~h~~~V~~i~~spd~~~lvsgs~ 1234 (2435)
...+ ....|...|.+++|+|+++.|++|+.|+.|++|+++..... .....|...|.+++|+|++++|++|+.
T Consensus 86 ~~~~----~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 86 KPTL----VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161 (371)
T ss_dssp EEEE----ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred cccc----ccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence 4332 34578899999999999999999999999999998876532 334578899999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccccc
Q psy4869 1235 DGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314 (2435)
Q Consensus 1235 Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1314 (2435)
|+.|++||............. .|+.. ............+.
T Consensus 162 D~~v~v~~~~~~~~~~~~~~~---------------------~~~~~-------------------~~~~~~~~~~~~~~ 201 (371)
T d1k8kc_ 162 DFKCRIFSAYIKEVEERPAPT---------------------PWGSK-------------------MPFGELMFESSSSC 201 (371)
T ss_dssp TSCEEEEECCCTTTSCCCCCB---------------------TTBSC-------------------CCTTCEEEECCCCS
T ss_pred CcEEEEEeeccCccccccccc---------------------ccccc-------------------ccceeeeeeccCcc
Confidence 999999998754321100000 00000 00000011122345
Q ss_pred ccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC--CceEE
Q psy4869 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY--GDCHK 1392 (2435)
Q Consensus 1315 ~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~--gk~~~ 1392 (2435)
..+.+++|+|+|++||+++.||.|++||+..++.+..+..|..+|.+++|+||+++|++|. |+.+++|..+. +++..
T Consensus 202 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~ 280 (371)
T d1k8kc_ 202 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSF 280 (371)
T ss_dssp SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEE
T ss_pred CcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEE
Confidence 7799999999999999999999999999999999999999999999999999999888765 66666654432 22211
Q ss_pred E---------------------------------------ecccccceEEEEEeeCC----CEEEEEeCCCcEEEEECCC
Q psy4869 1393 S---------------------------------------LLAHEDSVTGVTFVPKT----HYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1393 ~---------------------------------------~~~h~~~V~~laf~P~~----~~laSgg~Dg~V~lWd~~~ 1429 (2435)
. ...|.+.|++|++.|.+ ..|+|+|.||.|+|||+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 281 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 0 01388899999999855 4699999999999999975
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.9e-29 Score=320.94 Aligned_cols=283 Identities=17% Similarity=0.230 Sum_probs=235.0
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCc-eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCce
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE-CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR 439 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~-~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~ 439 (2435)
+..+|+|++|+|+|++||+|+.||.|+|||..++ ......+.+|.++|.+|+|+|++++|++++.|+.|++||+.++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 3578999999999999999999999999998754 345677899999999999999999999999999999999987764
Q ss_pred E--EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-----cCcccEEEEEECCCCCEEEEEecCCe
Q psy4869 440 I--KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-----NNTYQVTSVAFNDTAECVLTGGIDND 512 (2435)
Q Consensus 440 v--~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-----~~~~~v~sv~~sp~g~~l~sgs~dg~ 512 (2435)
. ..+.+|...+.++.|.|++ ..|++++.|+.+++|++......... .+...|.+++|+|++++|++|+.||.
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccccccccccccccc-ccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence 4 4456788999999999987 56788999999999998765543322 46778999999999999999999999
Q ss_pred EEEEECCC------------------CcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEe
Q psy4869 513 IKMWDLRT------------------NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMS 574 (2435)
Q Consensus 513 V~lwD~~s------------------~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~ 574 (2435)
|++||... ++.+....+|.+.|.+++|+|+|++|++++.|++|++||++. .+.+..+.
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~----~~~~~~~~ 240 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK----KMAVATLA 240 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG----TTEEEEEE
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec----ccceeeee
Confidence 99999764 245667788999999999999999999999999999999984 56777787
Q ss_pred CcccccccCeEEEEEcCCCCEEEEecCCCeEEEE--ECCCCcEEEE----------------------------------
Q psy4869 575 GHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIW--DTTTRRIAYK---------------------------------- 618 (2435)
Q Consensus 575 ~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iw--d~~s~~~~~~---------------------------------- 618 (2435)
.|. .++.+++|+|+|++|++|+ |+.+++| +...++....
T Consensus 241 ~~~----~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
T d1k8kc_ 241 SET----LPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 315 (371)
T ss_dssp CSS----CCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred ccc----ccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccc
Confidence 764 3789999999999988776 5655555 4332221100
Q ss_pred -----ecCCCCCeeEEEEcCCC----CEEEEEECCCcEEEecCC
Q psy4869 619 -----LPGHNGSVNDVQFHPKE----PIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 619 -----l~~h~~~V~~l~fspd~----~~Lasgs~Dg~I~vWd~~ 653 (2435)
...|.+.|+++++++.+ ..|+|+|.||.|++|+++
T Consensus 316 ~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 316 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359 (371)
T ss_dssp --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred ccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence 01388999999998754 369999999999999986
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-28 Score=306.99 Aligned_cols=320 Identities=20% Similarity=0.361 Sum_probs=248.4
Q ss_pred eecCCCccce-EEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEcc
Q psy4869 69 LLLPGEKHEV-CQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147 (2435)
Q Consensus 69 ~~~~g~~~~v-~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~ 147 (2435)
..|.||...| +++++ ++++||+|+.||.|++||+.+++.+.+|.+|++.|++++|+|+ .+|++|+.|+.|++|+..
T Consensus 6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~ 82 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK 82 (355)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence 4577897775 55655 6789999999999999999999999999999999999999985 689999999999999999
Q ss_pred CCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccc-----------------------cccc
Q psy4869 148 AECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMA-----------------------AHLT 204 (2435)
Q Consensus 148 ~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~-----------------------~h~~ 204 (2435)
..+.......+............++..++++++.|+.|++||++++..+.... .|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d1nexb2 83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 162 (355)
T ss_dssp TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence 98887777666555544444334667789999999999999998876543221 1222
Q ss_pred eEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccc
Q psy4869 205 EVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKK 284 (2435)
Q Consensus 205 ~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~ 284 (2435)
.+ ..+.+++++++++..|+.|++||++..+
T Consensus 163 ~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~------------------------------------------------ 192 (355)
T d1nexb2 163 SV--RTVSGHGNIVVSGSYDNTLIVWDVAQMK------------------------------------------------ 192 (355)
T ss_dssp CE--EEEEEETTEEEEEETTSCEEEEETTTTE------------------------------------------------
T ss_pred cc--cccccccceeeeecccceeeeeeccccc------------------------------------------------
Confidence 22 2344567777777778888888765321
Q ss_pred eEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCc
Q psy4869 285 WLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGE 364 (2435)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~ 364 (2435)
....+.+|...
T Consensus 193 ---------------------------------------------------------------------~~~~~~~~~~~ 203 (355)
T d1nexb2 193 ---------------------------------------------------------------------CLYILSGHTDR 203 (355)
T ss_dssp ---------------------------------------------------------------------EEEEECCCSSC
T ss_pred ---------------------------------------------------------------------ceeeeeccccc
Confidence 01123456677
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q psy4869 365 IFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK 444 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~ 444 (2435)
+.++.|+|++.++++++.||.|++||.... ..+..+.+|...|.+++|++ ++|++++.||.|++||++++.. .+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~~ 278 (355)
T d1nexb2 204 IYSTIYDHERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR--KFS 278 (355)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE--EEE
T ss_pred cccccccccceeeecccccceEEeeecccc-cccccccccccccccccccc--ceeeeeecccccccccccccce--ecc
Confidence 889999999999999999999999998765 35567889999999999964 6999999999999999987764 455
Q ss_pred ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee--cCcccEEEEEECCCCCEEEEEecCCeEEEEE
Q psy4869 445 GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM--NNTYQVTSVAFNDTAECVLTGGIDNDIKMWD 517 (2435)
Q Consensus 445 ~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD 517 (2435)
.|...+..+.+.+.++.++++|+ |+.|++||+++++.+... .|...|.+++|+|+ .++++++.||.++||.
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 279 YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred cccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence 67777777777666667776665 899999999999887543 57788999999986 5778889999876654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=3.3e-29 Score=307.64 Aligned_cols=286 Identities=20% Similarity=0.275 Sum_probs=226.1
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
.+++||.+.|++++|+|+|++|++|+.||.|++||+.++........+|...|.+++|+|+++ +++++.|+.+++|+..
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~ 84 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAG 84 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSS
T ss_pred eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccC
Confidence 578999999999999999999999999999999999876544333457999999999999986 5677789999999986
Q ss_pred CCce---EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCe
Q psy4869 436 KGQR---IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDND 512 (2435)
Q Consensus 436 tg~~---v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~ 512 (2435)
.... ......+...+.++.+.+++..+ + ++.++.+++|+... .........+.+++|+|++++|++|+.||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~-~-~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 159 (299)
T d1nr0a2 85 GSGVDSSKAVANKLSSQPLGLAVSADGDIA-V-AACYKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQDSK 159 (299)
T ss_dssp SSSSCTTSCCEEECSSCEEEEEECTTSSCE-E-EEESSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred Cccccccccccccccccccccccccccccc-c-cccccccccccccc---cccccccccccccccccccccccccccccc
Confidence 5321 12233466677788888887543 3 34567899999543 333445667889999999999999999999
Q ss_pred EEEEECCCCcEEE-EEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC
Q psy4869 513 IKMWDLRTNSVVQ-KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV 591 (2435)
Q Consensus 513 V~lwD~~s~~~v~-~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp 591 (2435)
|++||+++++... ....|.+.|++++|+|++++|++++.|+.|++||+..... ......+.+|. ..+.+++|+|
T Consensus 160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~~~h~----~~v~~l~~s~ 234 (299)
T d1nr0a2 160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-LAHTNSWTFHT----AKVACVSWSP 234 (299)
T ss_dssp EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE-ESCCCCCCCCS----SCEEEEEECT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc----cccccccccc
Confidence 9999999887654 3457999999999999999999999999999999974211 11122333443 4789999999
Q ss_pred CCCEEEEecCCCeEEEEECCCCcE--EEEecCC-CCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 592 SGLYVTAGSADKCVYIWDTTTRRI--AYKLPGH-NGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 592 dg~~Lasgs~Dg~V~iwd~~s~~~--~~~l~~h-~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+|++|++|+.||.|++||+++++. +.....| ...|.++.| +++++|++|+.||+|++||++
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 999999999999999999987643 3333344 456777765 556799999999999999986
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.5e-28 Score=301.90 Aligned_cols=329 Identities=26% Similarity=0.469 Sum_probs=262.1
Q ss_pred EeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeE
Q psy4869 188 WDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267 (2435)
Q Consensus 188 Wd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 267 (2435)
|+....++.+.+++|.+.|.. +++++|++|++|+.||+|++||+.+++
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~------------------------------- 48 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK------------------------------- 48 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------------------------------
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-------------------------------
Confidence 666667778889999999875 577889999999999999999987431
Q ss_pred EEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccC
Q psy4869 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGR 347 (2435)
Q Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 347 (2435)
T Consensus 49 -------------------------------------------------------------------------------- 48 (342)
T d2ovrb2 49 -------------------------------------------------------------------------------- 48 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC
Q psy4869 348 TSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ 427 (2435)
Q Consensus 348 ~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 427 (2435)
+...+.+|.+.|.+++|+| ++|++|+.|+.+++|+....... .....+...+....+. ...++.+..|+
T Consensus 49 ------~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~d~ 117 (342)
T d2ovrb2 49 ------CLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECI-HTLYGHTSTVRCMHLH--EKRVVSGSRDA 117 (342)
T ss_dssp ------EEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred ------EEEEEeCCCCCEEEEEeCC--Cccccceecccccccccccccce-ecccccceeEeeeecc--cccccccccce
Confidence 0123568999999999987 49999999999999998765433 3344555666655554 45788999999
Q ss_pred eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEE
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLT 506 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~s 506 (2435)
.+.+|+..+++....+..+....... . .....++.++.|+.|++||.+....+..+. +...+.. +.+++.++++
T Consensus 118 ~i~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s 192 (342)
T d2ovrb2 118 TLRVWDIETGQCLHVLMGHVAAVRCV--Q-YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVS 192 (342)
T ss_dssp EEEEEESSSCCEEEEEECCSSCEEEE--E-ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEE
T ss_pred eEEEeecccccceeeeecccccceee--c-cccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEE
Confidence 99999999998887776554433222 2 223467789999999999999888777664 4444444 4557899999
Q ss_pred EecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEE
Q psy4869 507 GGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586 (2435)
Q Consensus 507 gs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~ 586 (2435)
|+.||.|++||++.++++..+.+|...|.++.++ +++|++++.|+.|++||+.. .+....+.++.. ....+..
T Consensus 193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~----~~~~~~~~~~~~-~~~~~~~ 265 (342)
T d2ovrb2 193 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT----GQCLQTLQGPNK-HQSAVTC 265 (342)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTT----CCEEEEECSTTS-CSSCEEE
T ss_pred EeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccc----ccccccccccce-eeeceee
Confidence 9999999999999999999999999999988876 46999999999999999984 445555655432 2234555
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEec-----CCCCCeeEEEEcCCCCEEEEEECCCc----EEEecCC
Q psy4869 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP-----GHNGSVNDVQFHPKEPIIMSASSDKT----IYLGESP 653 (2435)
Q Consensus 587 v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~-----~h~~~V~~l~fspd~~~Lasgs~Dg~----I~vWd~~ 653 (2435)
+.+ +++++++|+.||.|+|||+++++++..+. +|.+.|++++|+|++.+|++|+.||+ |++||++
T Consensus 266 ~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 266 LQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred ccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 555 56799999999999999999999988774 57888999999999999999999996 9999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=9.8e-29 Score=303.41 Aligned_cols=290 Identities=16% Similarity=0.276 Sum_probs=228.9
Q ss_pred CCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEE-ecCCCcEEEEEEeecCCCcEEEEEeCCCcE
Q psy4869 107 TDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRL-SGHKGVITDIRFMSQPGHHFVVSSAKDTFV 185 (2435)
Q Consensus 107 ~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I 185 (2435)
|+..+.+.||++.|++|+|+|+|++||||+.||+|+|||+.+++.+..+ .+|.+.|.+++|+|+ +. +++++.|+.+
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~--g~-~~~~~~d~~v 78 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK--GD-LFTVSWDDHL 78 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT--SC-EEEEETTTEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc--ce-eecccceeeE
Confidence 4567899999999999999999999999999999999999998888777 479999999999864 33 6778899999
Q ss_pred EEEeccCCccc---cccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCc
Q psy4869 186 KIWDADTGDCF---KTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDL 262 (2435)
Q Consensus 186 ~iWd~~tg~~~---~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (2435)
++|+....... .....|...+.++++++++..++++ .++.+++|+.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~~~-------------------------- 131 (299)
T d1nr0a2 79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGKLT-------------------------- 131 (299)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTEEE--------------------------
T ss_pred EEeccCCcccccccccccccccccccccccccccccccc-cccccccccccccc--------------------------
Confidence 99998765432 2224577789999999998876655 45688998743100
Q ss_pred eeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeec
Q psy4869 263 TVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQ 342 (2435)
Q Consensus 263 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~ 342 (2435)
T Consensus 132 -------------------------------------------------------------------------------- 131 (299)
T d1nr0a2 132 -------------------------------------------------------------------------------- 131 (299)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEE
Q psy4869 343 KDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFT 422 (2435)
Q Consensus 343 ~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s 422 (2435)
.. .+...+.+++|+|++++|++|+.||.|++||+.+..........|...|.+++|+|++++|++
T Consensus 132 -------------~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 196 (299)
T d1nr0a2 132 -------------EV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 196 (299)
T ss_dssp -------------EE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred -------------cc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 011235678999999999999999999999998765444456679999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCC
Q psy4869 423 CSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAE 502 (2435)
Q Consensus 423 ~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~ 502 (2435)
++.|+.|++||+.++........ ...|...|++++|+|+++
T Consensus 197 ~~~d~~i~~~~~~~~~~~~~~~~---------------------------------------~~~h~~~v~~l~~s~~~~ 237 (299)
T d1nr0a2 197 TDQSRKVIPYSVANNFELAHTNS---------------------------------------WTFHTAKVACVSWSPDNV 237 (299)
T ss_dssp EETTSCEEEEEGGGTTEESCCCC---------------------------------------CCCCSSCEEEEEECTTSS
T ss_pred ccccccccccccccccccccccc---------------------------------------cccccccccccccccccc
Confidence 99999999999877654321110 012345788999999999
Q ss_pred EEEEEecCCeEEEEECCCCcEE--EEEecC-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 503 CVLTGGIDNDIKMWDLRTNSVV--QKLRGH-SDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 503 ~l~sgs~dg~V~lwD~~s~~~v--~~l~~h-~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
+|++|+.||.|++||++++... .....| ...|.++.| +++++|++++.|++|++||+.
T Consensus 238 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 9999999999999999876543 333344 456776655 567899999999999999973
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.3e-26 Score=289.00 Aligned_cols=249 Identities=18% Similarity=0.312 Sum_probs=211.0
Q ss_pred Eeccc-CCcEEEEEECC--CCCEEEEEeCCCeEEEEecCCce-------eeEEEeeCCCCCeeEEEEccCCCEEEEEeC-
Q psy4869 357 LLEGH-GGEIFCSKYHP--DGQYIASSGYDRQIFIWSVYGEC-------ENIGVMSGHTGAVMDLKFSTDGCHIFTCST- 425 (2435)
Q Consensus 357 ~l~gH-~~~V~~l~fsp--dg~~Lasgs~Dg~I~iwd~~~~~-------~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~- 425 (2435)
.+.+| ...|++++|+| +|.+|++|+.||+|+|||+.... .....+..|.++|.+++|++++++|++++.
T Consensus 57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~ 136 (325)
T d1pgua1 57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136 (325)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence 34566 46799999998 57899999999999999986321 112345679999999999999999988765
Q ss_pred -CCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee----cCcccEEEEEECCC
Q psy4869 426 -DQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM----NNTYQVTSVAFNDT 500 (2435)
Q Consensus 426 -Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~----~~~~~v~sv~~sp~ 500 (2435)
++.+++|++++++.+..+.+|...+.++.|.+.++.++++++.|+.+++||.+..+..... .+...|.+++|+|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd 216 (325)
T d1pgua1 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 216 (325)
T ss_dssp SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccc
Confidence 6689999999999999999999999999999999999999999999999999887765554 35667999999996
Q ss_pred -CCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEc---CCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCc
Q psy4869 501 -AECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLS---PDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGH 576 (2435)
Q Consensus 501 -g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~s---pdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h 576 (2435)
+++|++|+.||.|++||+++++.+..+.+|...+.++.|+ |||++|++++.|++|+|||++ .++++..+..+
T Consensus 217 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~----~~~~~~~~~~~ 292 (325)
T d1pgua1 217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT----TSKCVQKWTLD 292 (325)
T ss_dssp TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT----TTEEEEEEECC
T ss_pred cceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECC----CCCEEEEEEec
Confidence 6899999999999999999999999999998877666665 689999999999999999998 46788888877
Q ss_pred ccccccCeEEEEEcCCCCEEEEecCCCeEEEEEC
Q psy4869 577 QHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDT 610 (2435)
Q Consensus 577 ~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~ 610 (2435)
.+........+.|.++ .+|++|+.||.|+|||+
T Consensus 293 ~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 293 KQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred CCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence 6655445566666654 47889999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7.1e-27 Score=291.29 Aligned_cols=283 Identities=17% Similarity=0.263 Sum_probs=224.7
Q ss_pred eEEEeecCCCCeEEEEEcCCe-EEEEECCC--CCeEEEecCC-CCCEEEEEEcC--CCCEEEEEeCCCCEEEEEccCCee
Q psy4869 78 VCQLSPNHDSSQLAVAYTNGS-LKTFSLDT--TDVISTFTGH-KSAITVIQYDP--LGHRLATGSKDTDIVLWDVVAECG 151 (2435)
Q Consensus 78 v~~~~~~~d~~~lav~~~~G~-i~i~d~~~--~~~~~~l~gH-~~~V~~l~f~p--~g~~laSgs~Dg~I~iWd~~~~~~ 151 (2435)
+++++|+|++.++|+++++.. |+.|+... ...+..+.|| ...|++++|+| +|.+||+|+.||+|+|||+...+.
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~ 99 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE 99 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcc
Confidence 457899999999999865543 45555443 2457788998 57899999998 568999999999999999865331
Q ss_pred --------EEEEecCCCcEEEEEEeecCCCcEEEEE--eCCCcEEEEeccCCccccccccccceEEEEEEEeCCCe-EEE
Q psy4869 152 --------LHRLSGHKGVITDIRFMSQPGHHFVVSS--AKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSY-LIS 220 (2435)
Q Consensus 152 --------~~~l~gH~~~V~~v~~~~~~~~~~l~S~--s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~-l~s 220 (2435)
...+..|.++|.+++|+++ +.+|+++ +.|+.+++|++++++++..+.+|...|.+++|+|++.+ +++
T Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 100 SNSVEVNVKSEFQVLAGPISDISWDFE--GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GTEEEEEEEEEEECCSSCEEEEEECTT--SSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred eeeeecccccccccccCcEEEEEECCC--CCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence 2345789999999999853 4455554 45888999999999999999999999999999999876 678
Q ss_pred eeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeeccccc
Q psy4869 221 GSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITL 300 (2435)
Q Consensus 221 ~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 300 (2435)
++.|+.+++||++..+..
T Consensus 178 ~~~d~~v~~~d~~~~~~~-------------------------------------------------------------- 195 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFS-------------------------------------------------------------- 195 (325)
T ss_dssp EETTTEEEEEETTTBEEE--------------------------------------------------------------
T ss_pred eecccccccccccccccc--------------------------------------------------------------
Confidence 999999999997632100
Q ss_pred ccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCC-CCEEEE
Q psy4869 301 NIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPD-GQYIAS 379 (2435)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspd-g~~Las 379 (2435)
.....+.+|.+.|++++|+|+ +.+|++
T Consensus 196 ----------------------------------------------------~~~~~~~~~~~~v~~v~~~pd~~~~l~s 223 (325)
T d1pgua1 196 ----------------------------------------------------ASDRTHHKQGSFVRDVEFSPDSGEFVIT 223 (325)
T ss_dssp ----------------------------------------------------EEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred ----------------------------------------------------eecccccCCCCccEEeeeccccceeccc
Confidence 000113468888999999996 689999
Q ss_pred EeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEc---cCCCEEEEEeCCCeEEEEECCCCceEEEEeccCcccc--ccC
Q psy4869 380 SGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFS---TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVN--SCD 454 (2435)
Q Consensus 380 gs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s---~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~--sv~ 454 (2435)
|+.||.|++||++... .+..+.+|...+..+.|+ +|+++|++++.|+.|+|||+++++.+..+..|...+. .+.
T Consensus 224 ~~~d~~i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 302 (325)
T d1pgua1 224 VGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302 (325)
T ss_dssp EETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred cccccceeeeeecccc-ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEE
Confidence 9999999999987653 456778888887766666 6899999999999999999999999998887765443 344
Q ss_pred cccCCCeEEEEEeCCCeEEEEeC
Q psy4869 455 PVRRGQLLIASGSDDCTVKVWDP 477 (2435)
Q Consensus 455 ~~~~~~~llasgs~Dg~I~vwD~ 477 (2435)
+.+.+...+++++.||.|++||+
T Consensus 303 ~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 303 VVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEETTEEEEEETTSCEEEEET
T ss_pred EEECCCCEEEEEECCCEEEEEEC
Confidence 55554557889999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.2e-25 Score=287.90 Aligned_cols=346 Identities=14% Similarity=0.181 Sum_probs=239.9
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCe------eEEEEecCCCcEEEEEEe---ec--CCCcEEEE
Q psy4869 110 ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAEC------GLHRLSGHKGVITDIRFM---SQ--PGHHFVVS 178 (2435)
Q Consensus 110 ~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~------~~~~l~gH~~~V~~v~~~---~~--~~~~~l~S 178 (2435)
....+||.+.|.+++++ +++|+|||.|++|+|||..... .......|...+..+... +. ....++++
T Consensus 7 ~~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EEESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred eecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 45678999999999987 4799999999999999976532 234445677665544432 11 12347889
Q ss_pred EeCCCcEEEEeccCCcccccc----------ccccceEEEEEEEeC-----CCeEEEeeCCCcEEEEEcCCCCCccccch
Q psy4869 179 SAKDTFVKIWDADTGDCFKTM----------AAHLTEVWGVCVMRE-----DSYLISGSNDAELKVWNVRDRSDIDTEDK 243 (2435)
Q Consensus 179 ~s~Dg~I~iWd~~tg~~~~~~----------~~h~~~V~~l~~~p~-----~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~ 243 (2435)
++.||.|++|++..+.....+ ..+...++.++|.++ +.++++++.||++++|++.......
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~---- 160 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES---- 160 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH----
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc----
Confidence 999999999998766543222 345567888888875 4578999999999999987432100
Q ss_pred hhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccC
Q psy4869 244 DKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRK 323 (2435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 323 (2435)
.... . . .
T Consensus 161 ~~~~---------~---~-------------------------------------------------------------~ 167 (393)
T d1sq9a_ 161 NSLT---------L---N-------------------------------------------------------------W 167 (393)
T ss_dssp HHTT---------T---C-------------------------------------------------------------C
T ss_pred ceee---------e---e-------------------------------------------------------------e
Confidence 0000 0 0 0
Q ss_pred CCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceee-----E
Q psy4869 324 NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECEN-----I 398 (2435)
Q Consensus 324 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~-----~ 398 (2435)
.....+. ........|...+++++|+|+| +||+|+.||.|+|||+...... .
T Consensus 168 ~~~~~~~----------------------~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~ 224 (393)
T d1sq9a_ 168 SPTLELQ----------------------GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ 224 (393)
T ss_dssp CCEEEEE----------------------EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred ccceecc----------------------cceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccc
Confidence 0000000 0001122455668899999998 8999999999999999865332 1
Q ss_pred EEeeCCCCCeeEEEEccCCCEEEEEeCCC---eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEE
Q psy4869 399 GVMSGHTGAVMDLKFSTDGCHIFTCSTDQ---TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVW 475 (2435)
Q Consensus 399 ~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg---~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vw 475 (2435)
..+.+|..+|++|+|+|||++|++|+.|+ .|++||+++++.+..+.........
T Consensus 225 ~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~----------------------- 281 (393)
T d1sq9a_ 225 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA----------------------- 281 (393)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------------------
T ss_pred cccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccc-----------------------
Confidence 23467999999999999999999999887 4999999999988877643221110
Q ss_pred eCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEE----EEEEcCCCCEEEEEEC
Q psy4869 476 DPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVT----GLSLSPDGSYILSNAM 551 (2435)
Q Consensus 476 D~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~----~i~~spdg~~las~s~ 551 (2435)
......|...|++++|+|++++|++|+.|+.|+|||+++++++..+++|.+.|. .++|+|++..+++++
T Consensus 282 ------~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~- 354 (393)
T d1sq9a_ 282 ------SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354 (393)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC-
T ss_pred ------eeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc-
Confidence 001124777899999999999999999999999999999999999999998886 488999999887554
Q ss_pred CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEE
Q psy4869 552 DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWD 609 (2435)
Q Consensus 552 Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd 609 (2435)
+|++.-.....+. .. ....++.|++.+.|+.|++|.
T Consensus 355 -----~~~~~~~~~~~~~------~~-----------~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 355 -----VFDVKFLKKGWRS------GM-----------GADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp -----EEEEEEECTTTSB------ST-----------TCTTSCEEEEEETTTEEEEEE
T ss_pred -----cceEEECccCcee------cc-----------ccCCCCEEEEEEcCCeEEEEe
Confidence 3333210000000 00 011245688999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.8e-25 Score=272.38 Aligned_cols=269 Identities=18% Similarity=0.260 Sum_probs=216.1
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
+|+.+++||.++|++++|+| |++|+.||.|++||+... ..+|...|.+++|+++ ..+++++.|+++++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~------~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w 72 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM------HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE------ECCCCSCEEEEECCST-TCCEEEETTTEEEET
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC------CCCCCCCEEEEEecCC-CeEEEEeeccccccc
Confidence 46778999999999999997 999999999999998642 4689999999999875 468999999999999
Q ss_pred ECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCC-
Q psy4869 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDN- 511 (2435)
Q Consensus 433 d~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg- 511 (2435)
++...+ ....+..+.+.+++ .+++ .+.++.+.+|+...++....+.....+. +++++++.+++++.++
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASANNDG-FTAV-LTNDDDLLILQSFTGDIIKSVRLNSPGS--AVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp TEEEEE-------CSSCEEEEEECSSS-EEEE-EETTSEEEEEETTTCCEEEEEECSSCEE--EEEECSSEEEEEETTTS
T ss_pred cccccc-------cccceeeeeeccCC-ceEE-Eeecccceeeeccceeeeeeccccceee--eeeccCcceeeeccccc
Confidence 975321 22234445555554 3444 4556778999999988888877666554 4567788888888775
Q ss_pred eEEEEECCCCcEEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEE-EEeCcccccccCeEEEEE
Q psy4869 512 DIKMWDLRTNSVVQKLR-GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVK-VMSGHQHNFEKNLLRCAW 589 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~-~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~-~~~~h~~~~~~~i~~v~~ 589 (2435)
.|++|++...+....+. .|.+.|++++|+|++.+|++|+.||.|++||+.. ..... .+.+|. ..+.+++|
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~----~~~~~~~~~~h~----~~v~~~~~ 213 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS----REVKTSRWAFRT----SKINAISW 213 (287)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----TEEEECCSCCCS----SCEEEEEE
T ss_pred eeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecc----cccccccccccc----cccceeee
Confidence 69999998877666654 5788999999999999999999999999999974 22222 234443 47889999
Q ss_pred cCC----------CCEEEEecCCCeEEEEECCC-CcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 590 SVS----------GLYVTAGSADKCVYIWDTTT-RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 590 spd----------g~~Lasgs~Dg~V~iwd~~s-~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
+|+ +.+|++|+.|+.|+|||+++ ++.+..+.+|.+.|++++|+|++ .|++++.||.|++|++
T Consensus 214 ~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred cccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 874 57899999999999999976 56778888999999999999986 6899999999999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2e-24 Score=261.23 Aligned_cols=272 Identities=28% Similarity=0.474 Sum_probs=222.3
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
....+|...|+|++| +|++||+|+.||.|+|||+.+. +.+..+.+|.+.|.+++| ++++|++++.|+.|++|++.
T Consensus 9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~-~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 83 (293)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence 445688999999765 7999999999999999999764 456788999999999987 57799999999999999999
Q ss_pred CCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee----cCcccEEEEEECCCCCEEEEEecCC
Q psy4869 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM----NNTYQVTSVAFNDTAECVLTGGIDN 511 (2435)
Q Consensus 436 tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~----~~~~~v~sv~~sp~g~~l~sgs~dg 511 (2435)
.+........+....... ... ...++++..++.+++||.......... .+...+.++.+. ...+++++.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~ 158 (293)
T d1p22a2 84 TGEMLNTLIHHCEAVLHL--RFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR 158 (293)
T ss_dssp SCCEEEEECCCCSCEEEE--ECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred cccccccccccccccccc--ccc-ccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCC
Confidence 998877766554433322 222 246788999999999999876543332 456677776665 46788999999
Q ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC
Q psy4869 512 DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV 591 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp 591 (2435)
.|++||.++++.+..+.+|...|..+.++ +.++++++.|++|++||++. ...+..+.++.. .+ ..+++
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~----~v--~~~~~ 226 (293)
T d1p22a2 159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC----GACLRVLEGHEE----LV--RCIRF 226 (293)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT----CCEEEEECCCSS----CE--EEEEC
T ss_pred ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccc----ceeeeeecccce----ee--eeccc
Confidence 99999999999999999999999888775 67899999999999999983 566777766642 23 34677
Q ss_pred CCCEEEEecCCCeEEEEECCC---------CcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 592 SGLYVTAGSADKCVYIWDTTT---------RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 592 dg~~Lasgs~Dg~V~iwd~~s---------~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
++.+|++|+.||.|++||+.. ...+..+.+|.+.|++|+|+ +.+|++||.||+|++||
T Consensus 227 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 899999999999999999642 35778899999999999995 56899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=8e-25 Score=266.57 Aligned_cols=271 Identities=15% Similarity=0.185 Sum_probs=219.1
Q ss_pred CeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q psy4869 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1151 (2435)
Q Consensus 1072 ~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iw 1151 (2435)
.++++.+.+|..+|++++|+| |++|+.||+|++||+.++ ...|...|.++.|.++ ..+++++.|+.+++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEET
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeeccccccc
Confidence 478889999999999999987 999999999999998754 3579999999999865 568999999999999
Q ss_pred eCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEE
Q psy4869 1152 DADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1152 D~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvs 1231 (2435)
++... .....+..+++++++..+++ +.++.+.+|+..+++.+..+..+ ..+ .+++++++.+++
T Consensus 73 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v 135 (287)
T d1pgua2 73 GITKH-------------EFGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAV 135 (287)
T ss_dssp TEEEE-------------ECSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEE
T ss_pred ccccc-------------ccccceeeeeeccCCceEEE-eecccceeeeccceeeeeecccc-cee--eeeeccCcceee
Confidence 96532 13345677888887766665 45667899999998887776533 333 456677788888
Q ss_pred EECCC-cEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1232 TSKDG-RVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1232 gs~Dg-~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
++.|+ .+++|++........ ..
T Consensus 136 ~~~~~~~v~~~~~~~~~~~~~---------------------------------------------------------~~ 158 (287)
T d1pgua2 136 GLEEGNTIQVFKLSDLEVSFD---------------------------------------------------------LK 158 (287)
T ss_dssp EETTTSCEEEEETTEEEEEEE---------------------------------------------------------CS
T ss_pred eccccceeeeeeccccceeee---------------------------------------------------------ee
Confidence 88765 588888754221110 01
Q ss_pred ccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEE-ecCCCCCeEEEEEecC----------CCEEEEEeCCCc
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS-LYGHKLPVLSLDMSYD----------STLIATGSGDRT 1379 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~-~~~h~~~V~~la~spd----------g~~L~sGg~Dg~ 1379 (2435)
..+...+.+++|+|++.+|++|+.+|.|++||+.+++.... +.+|...|.+++|+|+ +.+|++|+.|+.
T Consensus 159 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~ 238 (287)
T d1pgua2 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238 (287)
T ss_dssp SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC
T ss_pred eccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe
Confidence 12346789999999999999999999999999999887654 6689999999999874 468999999999
Q ss_pred EEEEeCCC-CceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEEC
Q psy4869 1380 VKVWGLDY-GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1427 (2435)
Q Consensus 1380 V~iwdl~~-gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~ 1427 (2435)
|++||++. ++++..+.+|...|++|+|+|++ .|+|+|.||.|++||+
T Consensus 239 i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred EEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 99999977 66777888999999999999986 6999999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.1e-24 Score=278.80 Aligned_cols=312 Identities=14% Similarity=0.173 Sum_probs=224.3
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCc-----eeeEEEeeCCCCCeeEEEEcc-------CCCEEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE-----CENIGVMSGHTGAVMDLKFST-------DGCHIFTC 423 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~-----~~~~~~l~~h~~~V~~l~~s~-------dg~~L~s~ 423 (2435)
...++|.+.|+++++++ ++|++|+.|+.|+|||.... .........|...+..+.... ++..++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 45689999999999864 79999999999999996532 112233345555554443321 23467889
Q ss_pred eCCCeEEEEECCCCceEEEEe----------ccCccccccCcccCC----CeEEEEEeCCCeEEEEeCCCCcc-------
Q psy4869 424 STDQTLAVWDLEKGQRIKKMK----------GHSTFVNSCDPVRRG----QLLIASGSDDCTVKVWDPRKKNQ------- 482 (2435)
Q Consensus 424 s~Dg~I~vwd~~tg~~v~~l~----------~h~~~v~sv~~~~~~----~~llasgs~Dg~I~vwD~~~~~~------- 482 (2435)
+.||.|++|++........+. .+...+..+.+.+.. ..++++++.|+.+++||+.....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 999999999976543211111 122334444554433 36788999999999999753210
Q ss_pred ----e----Ee----ecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEE------ecCCCCEEEEEEcCCCC
Q psy4869 483 ----A----VS----MNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL------RGHSDTVTGLSLSPDGS 544 (2435)
Q Consensus 483 ----~----~~----~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l------~~h~~~V~~i~~spdg~ 544 (2435)
. .. ..+...+.+++|+|++ +|++|+.||.|+|||+++++++..+ .+|...|++|+|+|||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence 0 00 1234458899999997 8999999999999999999887655 46899999999999999
Q ss_pred EEEEEECCCc---EEEEEcCCCCCCCceEEEEe-------------CcccccccCeEEEEEcCCCCEEEEecCCCeEEEE
Q psy4869 545 YILSNAMDNT---VRIWDIRPYVPGERCVKVMS-------------GHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIW 608 (2435)
Q Consensus 545 ~las~s~Dg~---I~lWdl~~~~~~~~~v~~~~-------------~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iw 608 (2435)
+|++|+.|++ |++||++. ++++..+. +|. ..|.+++|+|+|++|++|+.|++|+||
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~----g~~~~~l~~~~~~~~~~~~~~gH~----~~V~~l~fspd~~~l~S~s~D~~v~vW 316 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEF----GERIGSLSVPTHSSQASLGEFAHS----SWVMSLSFNDSGETLCSAGWDGKLRFW 316 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTT----CCEEEEECBC--------CCBSBS----SCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred eeeeecCCCCcceeeeccccc----ceeeeeeccccccccceeeeeccc----CceeeeccCCCCCeeEEECCCCEEEEE
Confidence 9999999975 89999984 34444443 443 479999999999999999999999999
Q ss_pred ECCCCcEEEEecCCCCCee----EEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEE
Q psy4869 609 DTTTRRIAYKLPGHNGSVN----DVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCC 684 (2435)
Q Consensus 609 d~~s~~~~~~l~~h~~~V~----~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 684 (2435)
|+++++++.++.+|.+.|. .++|+|++..+++++. ..+|.++..... .........+++
T Consensus 317 d~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------------~~~~~~~~~~~~ 379 (393)
T d1sq9a_ 317 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV---FDVKFLKKGWRS--------------GMGADLNESLCC 379 (393)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE---EEEEEECTTTSB--------------STTCTTSCEEEE
T ss_pred ECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEccc---ceEEECccCcee--------------ccccCCCCEEEE
Confidence 9999999999999998886 5899999998876542 223222211000 001122445777
Q ss_pred ecCCceEEeee
Q psy4869 685 HGNDNVVDLFY 695 (2435)
Q Consensus 685 ~~~d~~~~~~~ 695 (2435)
.+.|+.+++|.
T Consensus 380 ~~~d~~ir~~~ 390 (393)
T d1sq9a_ 380 VCLDRSIRWFR 390 (393)
T ss_dssp EETTTEEEEEE
T ss_pred EEcCCeEEEEe
Confidence 88888888876
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.1e-24 Score=269.58 Aligned_cols=297 Identities=12% Similarity=0.141 Sum_probs=227.6
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce--eeEEEeeCCCCCeeEEEEccCC-CEEEEEeCCCeEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC--ENIGVMSGHTGAVMDLKFSTDG-CHIFTCSTDQTLAVW 432 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~--~~~~~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~I~vw 432 (2435)
.++++|.+.|++|+|+|++++||+|+.||+|+|||+.... .......+|.++|.+++|++++ .+|++|+.|+.|++|
T Consensus 5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence 4678999999999999999999999999999999986432 2334445799999999999864 578999999999999
Q ss_pred ECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-------cCcccEEEEEECCCCCEEE
Q psy4869 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-------NNTYQVTSVAFNDTAECVL 505 (2435)
Q Consensus 433 d~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-------~~~~~v~sv~~sp~g~~l~ 505 (2435)
++..+........+......+.+...+...+++++.|+.+++||++.+...... ........+.+.+.+..++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred ecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence 999888877777666655555555556678899999999999998754433222 1223445667788899999
Q ss_pred EEecCCeEEEEECCCCcEE---EEEecCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCCCCC--ceEEEEeC----
Q psy4869 506 TGGIDNDIKMWDLRTNSVV---QKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGE--RCVKVMSG---- 575 (2435)
Q Consensus 506 sgs~dg~V~lwD~~s~~~v---~~l~~h~~~V~~i~~sp-dg~~las~s~Dg~I~lWdl~~~~~~~--~~v~~~~~---- 575 (2435)
+++.||.|++||++..+.. .....+...+.++.+.+ ++..+++++.||.+.+|++....... .....+..
T Consensus 165 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T d1yfqa_ 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence 9999999999999876543 23344555666666654 67899999999999999986432111 11111111
Q ss_pred -cccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 576 -HQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 576 -h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
........+.+++|+|++++|++|+.||.|+|||+++++.+..+..+ ..+..++|+|++++|++|+.|+.+++|..-
T Consensus 245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 11122346789999999999999999999999999999999888543 345667888999999999999998888764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.3e-23 Score=253.88 Aligned_cols=275 Identities=25% Similarity=0.438 Sum_probs=223.2
Q ss_pred EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q psy4869 1074 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1153 (2435)
Q Consensus 1074 ~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~ 1153 (2435)
.+.....|...|+|++| |+++|++|+.||.|+|||+++++++.++.+|...|.+++| ++++|++++.|+.|++|++
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence 34455678889998764 7899999999999999999999999999999999999987 5789999999999999999
Q ss_pred CCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce---eeEeeccCCCEEEEEEeeCCCEEE
Q psy4869 1154 DNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC---HKSLLAHEDSVTGVTFVPKTHYFF 1230 (2435)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~---~~~~~~h~~~V~~i~~spd~~~lv 1230 (2435)
..+....... .+. .....+......++++..++.+++||...... ...+..|...|..+.+. ...++
T Consensus 83 ~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~ 152 (293)
T d1p22a2 83 NTGEMLNTLI------HHC--EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIV 152 (293)
T ss_dssp SSCCEEEEEC------CCC--SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEE
T ss_pred cccccccccc------ccc--cccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccc
Confidence 9877655432 222 22334556677899999999999999987653 34456788888887775 45788
Q ss_pred EEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1231 sgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+++.|+.+++||.++.+.+..+...
T Consensus 153 ~~s~d~~i~~~d~~~~~~~~~~~~~------------------------------------------------------- 177 (293)
T d1p22a2 153 SASGDRTIKVWNTSTCEFVRTLNGH------------------------------------------------------- 177 (293)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECC-------------------------------------------------------
T ss_pred cccCCCceeeecCCCCcEEEEEccc-------------------------------------------------------
Confidence 9999999999999887665443211
Q ss_pred ccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC---
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY--- 1387 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~--- 1387 (2435)
...+..+.+ ++.++++++.||.|++||+.+.+.+..+.+|...+.. +++++.+|++|+.||.|++||+..
T Consensus 178 ---~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~ 250 (293)
T d1p22a2 178 ---KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALD 250 (293)
T ss_dssp ---SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTS
T ss_pred ---ccccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCcc
Confidence 122334444 4678999999999999999999999999999988875 567889999999999999999754
Q ss_pred ------CceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1388 ------GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1388 ------gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
..++..+.+|.++|++|+|+ +.+|+|+|.||.|+|||
T Consensus 251 ~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 251 PRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred ccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 35677889999999999995 45799999999999998
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=8.5e-24 Score=261.34 Aligned_cols=296 Identities=14% Similarity=0.089 Sum_probs=223.0
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE---EEeccCCCEEEEEEccCC-CEEEEEeCCCcE
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK---SLLAHEDSVTGVTFVPKT-HYFFTTSKDGRV 1148 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~---~l~~h~~~V~~v~fsp~~-~~l~s~s~Dg~V 1148 (2435)
+.+...++|...|++|+|+|++++|++|+.||+|+|||++.+.... ...+|...|.+++|+|++ .+|++|+.|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 5566678999999999999999999999999999999998765433 334699999999999864 588999999999
Q ss_pred EEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEee----c--cCCCEEEEEE
Q psy4869 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL----A--HEDSVTGVTF 1222 (2435)
Q Consensus 1149 ~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~----~--h~~~V~~i~~ 1222 (2435)
++|+........... ..+........+.++...+++++.|+.+++||++.+....... . +......+.+
T Consensus 82 ~~w~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALT-----NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM 156 (342)
T ss_dssp EEECSSSSSSEEECB-----SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred eeeeccccccccccc-----ccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeee
Confidence 999998876655432 2334444556666788899999999999999997655332222 2 2234556677
Q ss_pred eeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccce
Q psy4869 1223 VPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKV 1302 (2435)
Q Consensus 1223 spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~ 1302 (2435)
.+++..+++++.|+.|++||++..........
T Consensus 157 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~------------------------------------------------ 188 (342)
T d1yfqa_ 157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE------------------------------------------------ 188 (342)
T ss_dssp EECSSEEEEEESTTEEEEEESSCCTTCCCEEE------------------------------------------------
T ss_pred eccCCceeeecCCCcEEEEecccCcccceeee------------------------------------------------
Confidence 78888999999999999999876543211100
Q ss_pred eeeeecccccccccEEEEE-ecCCcceeEEeecCCeEEEEEcccce---------EEE------EecCCCCCeEEEEEec
Q psy4869 1303 LSLLHTRTLKLEEQVLCAR-VSPDSKLLAVSLLDTTVKIFFLDTFK---------FFI------SLYGHKLPVLSLDMSY 1366 (2435)
Q Consensus 1303 ~~~~~~~~~~~~~~i~~ia-~spdg~~lavgs~dG~V~v~d~~~~k---------~i~------~~~~h~~~V~~la~sp 1366 (2435)
.......+.+.. +..++..+++++.+|.+.+|++.... ... ....|...|.+++|+|
T Consensus 189 -------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 261 (342)
T d1yfqa_ 189 -------ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp -------ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred -------ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC
Confidence 001122334443 34567788899999999999886421 111 1225667899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1367 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1367 dg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
++++|++|+.||.|++||+++++++..+..+ ..+..++|+|++.+|++++.|+.+++|....
T Consensus 262 ~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred CccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence 9999999999999999999999998887644 3566788889999999999999988887654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=1e-23 Score=264.56 Aligned_cols=325 Identities=10% Similarity=0.086 Sum_probs=244.1
Q ss_pred EEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEEccCCceeEEEec
Q psy4869 1046 ARVSP-DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDR--TVKVWGLDYGDCHKSLLA 1122 (2435)
Q Consensus 1046 l~~sp-dg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg--~I~vWd~~t~~~~~~l~~ 1122 (2435)
-.||| ||+++|+++ +|.|++|++.+++.+.. +|...|.+++|+|||++|++++.+. .|++||.++++. ..+..
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~ 83 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEE 83 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCC
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeC
Confidence 47999 999999987 68999999998876553 6999999999999999998776553 799999987764 46678
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe----------C
Q psy4869 1123 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS----------G 1192 (2435)
Q Consensus 1123 h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs----------~ 1192 (2435)
|...|.+++|+|++++|++++.++.+++|+.........+ ..+...+.+++|+|+|++|+.+. .
T Consensus 84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~ 157 (360)
T d1k32a3 84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 157 (360)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred CCceEEeeeecccccccceeccccccccccccccceeeee------ecccccccchhhccceeeeeeeccccccceeecc
Confidence 9999999999999999999999999999999988766554 36888899999999999998654 3
Q ss_pred CCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECC
Q psy4869 1193 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGD 1272 (2435)
Q Consensus 1193 Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d 1272 (2435)
++.+++||+.+++.. .+..|...+..+.|+|+++.|++++.|+.+.+||........ .
T Consensus 158 ~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~---------------------~ 215 (360)
T d1k32a3 158 MQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF---------------------E 215 (360)
T ss_dssp EEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC---------------------C
T ss_pred ccceeeeccccCcee-eecccccccccccccCCCCEEEEEeCCCceEcccccccceee---------------------c
Confidence 456999999987754 444677889999999999999999999999999876543211 0
Q ss_pred CeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC-----CeEEEEEcccce
Q psy4869 1273 KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD-----TTVKIFFLDTFK 1347 (2435)
Q Consensus 1273 ~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d-----G~V~v~d~~~~k 1347 (2435)
...+++.+.. .......+.|++++..++.+..+ .++..++...++
T Consensus 216 ~~~~~~~~~~------------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (360)
T d1k32a3 216 VVSKPFVIPL------------------------------IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD 265 (360)
T ss_dssp SCBEEEEEES------------------------------STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC
T ss_pred cccceEEEec------------------------------ccCccccceECCCcCcccccceeecccccceeecccCcCc
Confidence 0001111100 00111223455666655554332 123333434433
Q ss_pred EEEEecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEE
Q psy4869 1348 FFISLYGHKLPVLSLDMSYD---STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1424 (2435)
Q Consensus 1348 ~i~~~~~h~~~V~~la~spd---g~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~l 1424 (2435)
. ..+..+.+.+..+.+... +.++++++.++.|++||+.++++. .|.+.|.+++|+||+.+|++++.||.|++
T Consensus 266 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v 340 (360)
T d1k32a3 266 Y-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYT 340 (360)
T ss_dssp E-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEE
T ss_pred e-eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEE
Confidence 2 233444555555555544 457889999999999999998864 45567999999999999999999999999
Q ss_pred EECCCceeEEEEe
Q psy4869 1425 WDADNFERIVTLH 1437 (2435)
Q Consensus 1425 Wd~~~~~~l~~~~ 1437 (2435)
||++..+....+.
T Consensus 341 ~d~~~~~~~~~~~ 353 (360)
T d1k32a3 341 FPLEKPEDERTVE 353 (360)
T ss_dssp EESSCTTSCEECC
T ss_pred EECCCCCcceEEE
Confidence 9999877776664
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=1.1e-23 Score=264.19 Aligned_cols=337 Identities=10% Similarity=0.043 Sum_probs=247.3
Q ss_pred EEeecC-CCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCC--CEEEEEccCCeeEEEEe
Q psy4869 80 QLSPNH-DSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT--DIVLWDVVAECGLHRLS 156 (2435)
Q Consensus 80 ~~~~~~-d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg--~I~iWd~~~~~~~~~l~ 156 (2435)
...|+| ||+++|.+ ..|.|++||++.+..++. +|...|.+++|+|+|++|++++.|. .|++||..+++ ...+.
T Consensus 7 ~~~fSP~dG~~~a~~-~~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFV-SRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFE 82 (360)
T ss_dssp EEEEEECGGGCEEEE-ETTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EEECC
T ss_pred cccccCCCCCEEEEE-ECCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-EEEee
Confidence 356898 99999988 468999999998877663 7999999999999999998776553 79999997766 45678
Q ss_pred cCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCC
Q psy4869 157 GHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRS 236 (2435)
Q Consensus 157 gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~ 236 (2435)
+|.+.|.+++|+| ++.+|++++.|+.+++|+++++++...+..|...+.+++|+|+|++|+.+..++....+
T Consensus 83 ~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~------ 154 (360)
T d1k32a3 83 ENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD------ 154 (360)
T ss_dssp CCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC------
T ss_pred CCCceEEeeeecc--cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeecccccccee------
Confidence 9999999999985 56789999999999999999999999999999999999999999998865543220000
Q ss_pred CccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhh
Q psy4869 237 DIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELR 316 (2435)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 316 (2435)
T Consensus 155 -------------------------------------------------------------------------------- 154 (360)
T d1k32a3 155 -------------------------------------------------------------------------------- 154 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-
Q psy4869 317 TRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC- 395 (2435)
Q Consensus 317 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~- 395 (2435)
....+.+.+|+..... ...+..|...+.++.|+|+|++|++++.++.+++||.....
T Consensus 155 ----~~~~~~~~v~d~~~~~------------------~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~ 212 (360)
T d1k32a3 155 ----GYVMQAIHVYDMEGRK------------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 212 (360)
T ss_dssp ----SCCEEEEEEEETTTTE------------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred ----eccccceeeeccccCc------------------eeeecccccccccccccCCCCEEEEEeCCCceEcccccccce
Confidence 0001122344433221 11234566778899999999999999999999999865321
Q ss_pred -----eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC-----eEEEEECCCCceEEEEeccCccccccCcccCCC--eEE
Q psy4869 396 -----ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ-----TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ--LLI 463 (2435)
Q Consensus 396 -----~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg-----~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~--~ll 463 (2435)
.....+..|...+..+.|++++..++++..+. .+..++...++. ..+..+...+..+.+...++ .++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (360)
T d1k32a3 213 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYY 291 (360)
T ss_dssp ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHH
T ss_pred eeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEE
Confidence 12333455666667777888777666554432 233344444443 33444444444444433332 356
Q ss_pred EEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCE
Q psy4869 464 ASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV 534 (2435)
Q Consensus 464 asgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V 534 (2435)
++++.++.|++||+.+++... +...|.+++|+|||++|++++.||.|++||+++++...++..+..++
T Consensus 292 ~~~~~~~~i~~~d~~~~~~~~---~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 292 QGAPEKGVLLKYDVKTRKVTE---VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp HCCCCCEEEEEEETTTCCEEE---EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred EecCCCCEEEEEECCCCeEEE---ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence 778889999999998876533 33568999999999999999999999999999998887776665554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.2e-22 Score=262.62 Aligned_cols=368 Identities=10% Similarity=0.013 Sum_probs=261.1
Q ss_pred cCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCee--EEEE---ecC
Q psy4869 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG--LHRL---SGH 158 (2435)
Q Consensus 84 ~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~--~~~l---~gH 158 (2435)
+.+.-++++...+|.|.+||.++++.+..+..|. .+..++|+|||++|++++.|+.|++||+.+.+. ...+ .+|
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~ 107 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA 107 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence 3344346888889999999999999999999884 699999999999999999999999999987653 2333 356
Q ss_pred CCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCc
Q psy4869 159 KGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDI 238 (2435)
Q Consensus 159 ~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~ 238 (2435)
.+.+.+..|+|+ +..++++++.|++|+|||.++++++..+..|...+..+.+
T Consensus 108 ~~~~~s~~~SpD-G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~--------------------------- 159 (432)
T d1qksa2 108 RSIETSKMEGWE-DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY--------------------------- 159 (432)
T ss_dssp EEEEECCSTTCT-TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE---------------------------
T ss_pred CCeEEecccCCC-CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceec---------------------------
Confidence 666666666542 3345688999999999999999877666554221110000
Q ss_pred cccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhh
Q psy4869 239 DTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTR 318 (2435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (2435)
T Consensus 160 -------------------------------------------------------------------------------- 159 (432)
T d1qksa2 160 -------------------------------------------------------------------------------- 159 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEE-EEEeCCCeEEEEecCCceee
Q psy4869 319 SMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYI-ASSGYDRQIFIWSVYGECEN 397 (2435)
Q Consensus 319 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~L-asgs~Dg~I~iwd~~~~~~~ 397 (2435)
.+......+.++|+|.++ ++...++.|.+||.......
T Consensus 160 -----------------------------------------~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~ 198 (432)
T d1qksa2 160 -----------------------------------------HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL 198 (432)
T ss_dssp -----------------------------------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred -----------------------------------------cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc
Confidence 122234456788888765 45567789999998754332
Q ss_pred EEEeeCCCCCeeEEEEccCCCEEEEEeC-CCeEEEEECCCCceEEEEeccC-----ccccccCcccCCCeEEEEEeCCCe
Q psy4869 398 IGVMSGHTGAVMDLKFSTDGCHIFTCST-DQTLAVWDLEKGQRIKKMKGHS-----TFVNSCDPVRRGQLLIASGSDDCT 471 (2435)
Q Consensus 398 ~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~vwd~~tg~~v~~l~~h~-----~~v~sv~~~~~~~~llasgs~Dg~ 471 (2435)
......+...+.+++|+|||+++++++. ++.+.++|..+++.+..+.... .......+...+.........|+.
T Consensus 199 ~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~ 278 (432)
T d1qksa2 199 KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS 278 (432)
T ss_dssp EEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSE
T ss_pred eEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCce
Confidence 2222345678899999999998888776 4589999999888877765322 111122222222222233335888
Q ss_pred EEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC
Q psy4869 472 VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM 551 (2435)
Q Consensus 472 I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~ 551 (2435)
|.+|+...... ..+...+....+.|++..+++++.++.+++|+..... .|......+++ ||++.|++++.
T Consensus 279 v~~~~~~~~~~---~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-pDg~~la~~s~ 348 (432)
T d1qksa2 279 VALIGTDPEGH---PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-FDIKAMTGDGS 348 (432)
T ss_dssp EEEEECCTTTC---TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-EEGGGCCCSSS
T ss_pred EEecccccccc---cccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-Eechhhccccc
Confidence 99998665432 2355678899999999999999999999999865442 34333344555 89999999999
Q ss_pred CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEec-----CCCeEEEEECCCCcEEEEecCC
Q psy4869 552 DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGS-----ADKCVYIWDTTTRRIAYKLPGH 622 (2435)
Q Consensus 552 Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs-----~Dg~V~iwd~~s~~~~~~l~~h 622 (2435)
|+.+++||+... .. +..|. ..+.++.|+|||++|+.+. .+|.|.|||.+++++...+.+.
T Consensus 349 d~~~k~w~~~~~----~~---l~~~~----~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 349 DPEFKTLPIAEW----AG---ITEGQ----PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp CCCEEEECHHHH----HT---CCSSC----CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCceEecccccc----cc---cCCCC----CcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 999999998532 11 11121 3578899999999886653 4689999999999998888663
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.88 E-value=2.9e-21 Score=249.69 Aligned_cols=344 Identities=10% Similarity=0.083 Sum_probs=249.1
Q ss_pred eEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEE--EE---ecCCCcEE
Q psy4869 89 QLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLH--RL---SGHKGVIT 163 (2435)
Q Consensus 89 ~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~--~l---~gH~~~V~ 163 (2435)
.++++.+||.|++||+.+++.+.++.+|. .+..++|+|||++|++++.|++|++||+.+.+... .+ .+|.+.+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 45667779999999999999999999885 59999999999999999999999999998876433 22 36666777
Q ss_pred EEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCe-EEEeeCCCcEEEEEcCCCCCccccc
Q psy4869 164 DIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSY-LISGSNDAELKVWNVRDRSDIDTED 242 (2435)
Q Consensus 164 ~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~-l~s~s~Dg~v~vwdl~~~~~~~~~~ 242 (2435)
+++|+|+ +..+++++..|+.+++||..+++++..+..|...+....+.+++.. .+.++.|+...+|.......
T Consensus 113 s~~~spD-G~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~----- 186 (426)
T d1hzua2 113 SKFKGYE-DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK----- 186 (426)
T ss_dssp CCSTTCT-TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE-----
T ss_pred eeeecCC-CCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCe-----
Confidence 7777753 3345577779999999999999999999888888888888887764 56778888877776543210
Q ss_pred hhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhccc
Q psy4869 243 KDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKR 322 (2435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (2435)
T Consensus 187 -------------------------------------------------------------------------------- 186 (426)
T d1hzua2 187 -------------------------------------------------------------------------------- 186 (426)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEe-CCCeEEEEecCCceeeEE-E
Q psy4869 323 KNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGECENIG-V 400 (2435)
Q Consensus 323 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs-~Dg~I~iwd~~~~~~~~~-~ 400 (2435)
+.+++.... ........++...+..+.|+|+|++++++. .+..+.+++......... .
T Consensus 187 ----i~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 246 (426)
T d1hzua2 187 ----VLLVNYKDI----------------DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 246 (426)
T ss_dssp ----EEEEECSSS----------------SSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred ----EEEEEeccc----------------cceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEec
Confidence 000000000 000112335667788999999999888776 556788898876543221 1
Q ss_pred eeCCCCCeeEEEEccCCC-EEE--EEeCCCeEEEEECCC-------CceEEEEeccCccccccCcccCCCeEEE------
Q psy4869 401 MSGHTGAVMDLKFSTDGC-HIF--TCSTDQTLAVWDLEK-------GQRIKKMKGHSTFVNSCDPVRRGQLLIA------ 464 (2435)
Q Consensus 401 l~~h~~~V~~l~~s~dg~-~L~--s~s~Dg~I~vwd~~t-------g~~v~~l~~h~~~v~sv~~~~~~~~lla------ 464 (2435)
...+......+.+..++. .+. ..+.|+.+.+|+... ++....+.+|...+..++|+|++.++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~ 326 (426)
T d1hzua2 247 VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP 326 (426)
T ss_dssp CSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCS
T ss_pred cCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCC
Confidence 222333333444443332 222 233577888887643 4788899999999999999999987765
Q ss_pred EEeCCCeEEEEeCCCCcceEee----------cCcccEEEEEECCCCCEEEEE-----ecCCeEEEEECCCCcEEEEEec
Q psy4869 465 SGSDDCTVKVWDPRKKNQAVSM----------NNTYQVTSVAFNDTAECVLTG-----GIDNDIKMWDLRTNSVVQKLRG 529 (2435)
Q Consensus 465 sgs~Dg~I~vwD~~~~~~~~~~----------~~~~~v~sv~~sp~g~~l~sg-----s~dg~V~lwD~~s~~~v~~l~~ 529 (2435)
+++.|++|++||+.+++....+ .+...+..++|+|||+++++. +.+|.|+|||.++++.+..+.+
T Consensus 327 s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 327 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECC
Confidence 4566889999999988766543 345568999999999987543 3578899999999999999887
Q ss_pred CCCCEEEEEEcCCCCE
Q psy4869 530 HSDTVTGLSLSPDGSY 545 (2435)
Q Consensus 530 h~~~V~~i~~spdg~~ 545 (2435)
+. .+.|+|++
T Consensus 407 ~~------~~tp~Gk~ 416 (426)
T d1hzua2 407 PR------LITPTGKF 416 (426)
T ss_dssp TT------CCSEEEEE
T ss_pred CC------ccCCCceE
Confidence 75 23566655
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1.1e-20 Score=244.09 Aligned_cols=348 Identities=11% Similarity=-0.025 Sum_probs=259.6
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCce--eEEEe---ccCCCEE
Q psy4869 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC--HKSLL---AHEDSVT 1128 (2435)
Q Consensus 1054 ~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~--~~~l~---~h~~~V~ 1128 (2435)
++++...+|.|.|||..+++.+..+..|. .+..++|+|||++|++++.|+.|++||+.+++. +..+. .|...+.
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence 34666678999999999999999999774 699999999999999999999999999988763 33333 4555666
Q ss_pred EEEEccCCCEE-EEEeCCCcEEEEeCCCcceeEEEEEEEe-----ecccccCeEEEEEeCCCCEEE-EEeCCCcEEEEEc
Q psy4869 1129 GVTFVPKTHYF-FTTSKDGRVKQWDADNFERIVTLHFFIS-----LYGHKLPVLSLDMSYDSTLIA-TGSGDRTVKVWGL 1201 (2435)
Q Consensus 1129 ~v~fsp~~~~l-~s~s~Dg~V~iwD~~~~~~~~~~~~~~~-----~~~h~~~V~~l~~s~dg~~l~-sgs~Dg~V~iwd~ 1201 (2435)
+..|+|||++| +++..++.|++||..+++.+..+..... ...+......+.+++++..++ +...++.|.+||.
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 67778899976 5777899999999999887776542211 123456677889999998765 4567799999999
Q ss_pred cCCceeeEee-ccCCCEEEEEEeeCCCEEEEEEC-CCcEEEEECCCCceEEEEeeCCcccc---------cCceEEEEE-
Q psy4869 1202 DYGDCHKSLL-AHEDSVTGVTFVPKTHYFFTTSK-DGRVKQWDADNFERIVTLHFNPNVYL---------PLQIQVVTG- 1269 (2435)
Q Consensus 1202 ~t~~~~~~~~-~h~~~V~~i~~spd~~~lvsgs~-Dg~I~vwD~~~~~~v~~~~~~~~~~~---------~~~~~lv~g- 1269 (2435)
.+++...... .+...+.++.|+|+++++++++. ++.+.++|....+.+..+........ +....+...
T Consensus 193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 272 (432)
T d1qksa2 193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS 272 (432)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceeccc
Confidence 8877554333 45667899999999999888885 55788999998887777654433221 111122222
Q ss_pred -ECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceE
Q psy4869 1270 -GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF 1348 (2435)
Q Consensus 1270 -~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~ 1348 (2435)
..++.+.+|...... ...+...+....++|++..+++++.++..++|......
T Consensus 273 ~lg~~~v~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~- 326 (432)
T d1qksa2 273 HMGDDSVALIGTDPEG-------------------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN- 326 (432)
T ss_dssp BSSSSEEEEEECCTTT-------------------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-
T ss_pred ccCCceEEeccccccc-------------------------ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-
Confidence 236777788653111 11233567788999999999999999999999865543
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEe-----CCCcEE
Q psy4869 1349 FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS-----KDGRVK 1423 (2435)
Q Consensus 1349 i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg-----~Dg~V~ 1423 (2435)
.|......+++ ||++.|++|+.|+.+++|++.++..+ ..|...|..++|+|||++++.+. .||.|+
T Consensus 327 -----~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~ 397 (432)
T d1qksa2 327 -----PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALV 397 (432)
T ss_dssp -----SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEE
T ss_pred -----CCCCeeeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEE
Confidence 23333334554 89999999999999999998766433 35667899999999998775443 468999
Q ss_pred EEECCCceeEEEEe
Q psy4869 1424 QWDADNFERIVTLH 1437 (2435)
Q Consensus 1424 lWd~~~~~~l~~~~ 1437 (2435)
|||-.+.+..+.+.
T Consensus 398 i~D~~T~k~~~~i~ 411 (432)
T d1qksa2 398 VVDDKTLELKHVIK 411 (432)
T ss_dssp EEETTTTEEEEEEC
T ss_pred EEECCCceEEeEec
Confidence 99999998877664
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=6.5e-20 Score=236.83 Aligned_cols=337 Identities=10% Similarity=0.007 Sum_probs=239.2
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE--e---ccCCCEE
Q psy4869 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL--L---AHEDSVT 1128 (2435)
Q Consensus 1054 ~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l--~---~h~~~V~ 1128 (2435)
++++...||.|+|||+.+++.+..+..|. .+..++|+|||++|++++.|+.|++||+.+++..... . +|...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 44556678999999999999999999775 5899999999999999999999999999988754433 2 4556677
Q ss_pred EEEEccCCCEEEEE-eCCCcEEEEeCCCcceeEEEEEEEe-----ecccccCeEEEEEeCCCCEEEEEeC-CCcEEEEEc
Q psy4869 1129 GVTFVPKTHYFFTT-SKDGRVKQWDADNFERIVTLHFFIS-----LYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGL 1201 (2435)
Q Consensus 1129 ~v~fsp~~~~l~s~-s~Dg~V~iwD~~~~~~~~~~~~~~~-----~~~h~~~V~~l~~s~dg~~l~sgs~-Dg~V~iwd~ 1201 (2435)
+++|+|||++++++ ..++.+++||.........+..... ...+......+..++++..++.... .+.+.+++.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 77888999987554 5789999999999877665542111 1123445566777777777666544 456666666
Q ss_pred cCCceee-EeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEE
Q psy4869 1202 DYGDCHK-SLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQ 1279 (2435)
Q Consensus 1202 ~t~~~~~-~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwd 1279 (2435)
..+..+. ....+...+..+.|+|++++++++. .+..+.+||....+.+............ .....+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~- 260 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG-----------RGANFV- 260 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS-----------CCEEEE-
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccc-----------ceeeee-
Confidence 6554332 3346788899999999999988887 5666889999887776655432211000 000000
Q ss_pred cccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCe
Q psy4869 1280 LELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPV 1359 (2435)
Q Consensus 1280 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V 1359 (2435)
......+....+++++...+.+.....+.+ ..++....+.+|...+
T Consensus 261 -------------------------------~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~---~~~~~~~~l~g~~~~v 306 (426)
T d1hzua2 261 -------------------------------HPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---YAWKKVAELQGQGGGS 306 (426)
T ss_dssp -------------------------------ETTTEEEEEEECTTTCEEEEEECCTTTCTT---TBTSEEEEEECSSSCC
T ss_pred -------------------------------cCCCCceEEeccCCCceEEEeecccccccc---ccceEeEEEecCCCce
Confidence 011223334444455544444443333222 2357888999999999
Q ss_pred EEEEEecCCCEEEE-------EeCCCcEEEEeCCCCceEEEe---------cccccceEEEEEeeCCCEE-EEE----eC
Q psy4869 1360 LSLDMSYDSTLIAT-------GSGDRTVKVWGLDYGDCHKSL---------LAHEDSVTGVTFVPKTHYF-FTT----SK 1418 (2435)
Q Consensus 1360 ~~la~spdg~~L~s-------Gg~Dg~V~iwdl~~gk~~~~~---------~~h~~~V~~laf~P~~~~l-aSg----g~ 1418 (2435)
..++|+|||++|++ |..|+.|++||++++++...+ ..|...|..++|+|||.++ +|+ +.
T Consensus 307 ~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~ 386 (426)
T d1hzua2 307 LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKND 386 (426)
T ss_dssp CCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTS
T ss_pred eEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCC
Confidence 99999999999994 667899999999998876543 2455679999999999765 454 35
Q ss_pred CCcEEEEECCCceeEEEEe
Q psy4869 1419 DGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1419 Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
||.|+|||..+.+.+..+.
T Consensus 387 ~~~i~v~D~~T~k~~~~i~ 405 (426)
T d1hzua2 387 SSALVVVDDKTLKLKAVVK 405 (426)
T ss_dssp CCEEEEEETTTTEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEC
Confidence 7899999999998877765
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.81 E-value=2.7e-17 Score=199.85 Aligned_cols=272 Identities=18% Similarity=0.160 Sum_probs=215.3
Q ss_pred EEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEE-EeCCCeEEEEEccCCceeecccccccceeEEEEec
Q psy4869 899 ALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLV-GTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLP 977 (2435)
Q Consensus 899 ~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lav-g~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~ 977 (2435)
|++...++.|.|||+.+++.+.+++.+..+..++|+|||++|++ +..++.|.+||+.+++.+..++.|. .+..++|++
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP 83 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence 33344568999999999999999998888999999999999865 5678999999999999999888776 457899998
Q ss_pred CCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEE
Q psy4869 978 DQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV 1057 (2435)
Q Consensus 978 d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lav 1057 (2435)
++ ...++++..++.+.+|+...+.. ...+.....+.++.|+|+|..+++
T Consensus 84 ~~---------~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~dg~~~~~ 132 (301)
T d1l0qa2 84 DG---------KQVYVTNMASSTLSVIDTTSNTV----------------------AGTVKTGKSPLGLALSPDGKKLYV 132 (301)
T ss_dssp TS---------SEEEEEETTTTEEEEEETTTTEE----------------------EEEEECSSSEEEEEECTTSSEEEE
T ss_pred cc---------ccccccccccceeeeccccccee----------------------eeeccccccceEEEeecCCCeeee
Confidence 86 23566777789999999764321 112334567889999999998876
Q ss_pred EEC-CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECC-CcEEEEEccCCceeEEEeccCCCEEEEEEccC
Q psy4869 1058 SLL-DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD-RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1135 (2435)
Q Consensus 1058 g~~-dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~D-g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~ 1135 (2435)
+.. ++.+.+|+..+.+.+..+..+ ..+..+++++++..++++..+ +.+.+|+....+....+. ....+..++|+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 210 (301)
T d1l0qa2 133 TNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPE 210 (301)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTT
T ss_pred eeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeecccc
Confidence 654 678999999999988888754 467889999999988887765 556677766666555554 4456788999999
Q ss_pred CCEEEEEeC---CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEE-EEeCCCcEEEEEccCCceeeEee
Q psy4869 1136 THYFFTTSK---DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIA-TGSGDRTVKVWGLDYGDCHKSLL 1211 (2435)
Q Consensus 1136 ~~~l~s~s~---Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~-sgs~Dg~V~iwd~~t~~~~~~~~ 1211 (2435)
+..++++.. ++.|++||..+++....+. +...+.+++|+|||++|+ +++.|+.|++||+++++.+.++.
T Consensus 211 g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-------~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIP-------VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTEEEEEEE-------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccccceeeeeeeeecCCCeEEEEEc-------CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 998876643 4679999999987766553 345689999999999874 66778999999999999888775
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.80 E-value=2.4e-17 Score=200.21 Aligned_cols=263 Identities=13% Similarity=0.178 Sum_probs=213.6
Q ss_pred EEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEEeccCccccccCc
Q psy4869 377 IASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIF-TCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDP 455 (2435)
Q Consensus 377 Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~-s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~ 455 (2435)
.++++.|+.|.+||+.+.. .+..+.. ...+..++|+|||++|+ +++.++.|++||+.+++.+..+..|.. +..+.+
T Consensus 5 yV~~~~~~~v~v~D~~t~~-~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~ 81 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNK-VTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAV 81 (301)
T ss_dssp EEEETTTTEEEEEETTTTE-EEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEE
T ss_pred EEEECCCCEEEEEECCCCe-EEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccc
Confidence 3466789999999998764 3344443 35678999999999875 566789999999999999999987764 567889
Q ss_pred ccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEEEecCCCCE
Q psy4869 456 VRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTG-GIDNDIKMWDLRTNSVVQKLRGHSDTV 534 (2435)
Q Consensus 456 ~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sg-s~dg~V~lwD~~s~~~v~~l~~h~~~V 534 (2435)
.+++..+++++..++.+.+||...++....+.......+++|+|+|+.++.+ ..++.+.+|+..+++.+..+..+ ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 160 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP 160 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred ccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCc
Confidence 9999999999999999999999999988888888889999999999987654 56788999999999988888755 457
Q ss_pred EEEEEcCCCCEEEEEECC-CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEec---CCCeEEEEEC
Q psy4869 535 TGLSLSPDGSYILSNAMD-NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGS---ADKCVYIWDT 610 (2435)
Q Consensus 535 ~~i~~spdg~~las~s~D-g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs---~Dg~V~iwd~ 610 (2435)
..+.++|+++.+++++.+ +.+.+|+... .........+ .....+.|+++|+.++.+. .++.|++||.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~ 231 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVT----NSVIDTVKVE-----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTT----TEEEEEEECS-----SEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred eEEEeeccccceeeecccccccccccccc----eeeeeccccc-----CCcceeeccccccccccccccceeeeeeeeec
Confidence 899999999999888765 5666777652 3444444333 2467889999999887654 3578999999
Q ss_pred CCCcEEEEecCCCCCeeEEEEcCCCCEE-EEEECCCcEEEecCC
Q psy4869 611 TTRRIAYKLPGHNGSVNDVQFHPKEPII-MSASSDKTIYLGESP 653 (2435)
Q Consensus 611 ~s~~~~~~l~~h~~~V~~l~fspd~~~L-asgs~Dg~I~vWd~~ 653 (2435)
.+++.+..+.. ...+.+++|+|||++| ++++.|+.|++||+.
T Consensus 232 ~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 232 GTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp TTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 99999888765 4568999999999976 577789999999986
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.78 E-value=4.7e-18 Score=210.81 Aligned_cols=308 Identities=11% Similarity=0.030 Sum_probs=224.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec-cCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCcceeEEEEEE
Q psy4869 1088 LDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA-HEDSVTGVTFVPKTHYFF-TTSKDGRVKQWDADNFERIVTLHFF 1165 (2435)
Q Consensus 1088 l~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~-h~~~V~~v~fsp~~~~l~-s~s~Dg~V~iwD~~~~~~~~~~~~~ 1165 (2435)
++|++++++|++++.|+.|.+||+++++.+.++.. |...+.+++|+||+++++ ++..++.|++||+.+++....+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 46889999999999999999999999999998874 566788999999999875 4557899999999998877665422
Q ss_pred EeecccccCeEEEEEeCCCCEEEEEe------------CCCcEEEEEccCCceeeEeecc--CCCEEEEEEeeCCCEEEE
Q psy4869 1166 ISLYGHKLPVLSLDMSYDSTLIATGS------------GDRTVKVWGLDYGDCHKSLLAH--EDSVTGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1166 ~~~~~h~~~V~~l~~s~dg~~l~sgs------------~Dg~V~iwd~~t~~~~~~~~~h--~~~V~~i~~spd~~~lvs 1231 (2435)
.....+...+..++|++||+++++++ .++.+.+||..+++....+..+ ...+..+.+.+++..++.
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 11122233466889999999998775 4778999999988766554433 345666667777765553
Q ss_pred EECCCcEEEEECCCCceEEEEeeCCc----ccccCceEE-EEEECCCeEEEEEcccccccccccccccccccccceeeee
Q psy4869 1232 TSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQV-VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLL 1306 (2435)
Q Consensus 1232 gs~Dg~I~vwD~~~~~~v~~~~~~~~----~~~~~~~~l-v~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 1306 (2435)
++.+.+||..+.+.+..+..... .+.+....+ +....++.+.+++.
T Consensus 162 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 212 (346)
T d1jmxb_ 162 ---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT-------------------------- 212 (346)
T ss_dssp ---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE--------------------------
T ss_pred ---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeee--------------------------
Confidence 36689999998888777654332 112222221 11122222222221
Q ss_pred ecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q psy4869 1307 HTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS-LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1385 (2435)
Q Consensus 1307 ~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~-~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl 1385 (2435)
...+.+....++.+..++.+.+|+..++..... +..|...+..+.+++++.+++.+.. +.|++||.
T Consensus 213 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~ 279 (346)
T d1jmxb_ 213 ------------IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDL 279 (346)
T ss_dssp ------------EEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEET
T ss_pred ------------eeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEEC
Confidence 122334455566777788899999998775544 4577888999999999998887764 57999999
Q ss_pred CCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEEEee
Q psy4869 1386 DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHI 1438 (2435)
Q Consensus 1386 ~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~~~~ 1438 (2435)
.+++++.... +...+.+|+|+||+.+|++++.||.|++||..+.+.++++..
T Consensus 280 ~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 280 KQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp TTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence 9999887765 345799999999999999999999999999999999998864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=1.5e-17 Score=205.38 Aligned_cols=298 Identities=10% Similarity=0.054 Sum_probs=223.4
Q ss_pred CEEEEEECCCcEEEEEccCCceeEEEecc--CCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCcceeEEEEEEEeeccc
Q psy4869 1095 TLIATGSGDRTVKVWGLDYGDCHKSLLAH--EDSVTGVTFVPKTHYFF-TTSKDGRVKQWDADNFERIVTLHFFISLYGH 1171 (2435)
Q Consensus 1095 ~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h--~~~V~~v~fsp~~~~l~-s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h 1171 (2435)
++|++++.|++|.+||+++++.+..+..+ ...+..++|+|||++++ +++.++.|++||+.+++.+..+... ....+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS-TPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC-BTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC-CCccc
Confidence 47999999999999999999999988753 45678999999999875 5678899999999998877766411 01112
Q ss_pred ccCeEEEEEeCCCCEEEEEe------------CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEE
Q psy4869 1172 KLPVLSLDMSYDSTLIATGS------------GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1239 (2435)
Q Consensus 1172 ~~~V~~l~~s~dg~~l~sgs------------~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~ 1239 (2435)
...+..++|+|++++++++. .++.+.+||..+++.+..+. +...+.++.|+|+++++++++. .+.
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~ 157 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGR--DLH 157 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESS--SEE
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcC--Ccc
Confidence 33455789999999998876 36789999999998887775 4556889999999999998764 577
Q ss_pred EEECCCCceEEEEeeCCcccc----cCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccc
Q psy4869 1240 QWDADNFERIVTLHFNPNVYL----PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1315 (2435)
Q Consensus 1240 vwD~~~~~~v~~~~~~~~~~~----~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1315 (2435)
+||....+....+........ +.... +| .........
T Consensus 158 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~----------------------------~~~~~~~~~ 198 (337)
T d1pbyb_ 158 VMDPEAGTLVEDKPIQSWEAETYAQPDVLA-----------VW----------------------------NQHESSGVM 198 (337)
T ss_dssp EEETTTTEEEEEECSTTTTTTTBCCCBCCC-----------CC----------------------------CCCTTTTEE
T ss_pred eeeeecCcEEEEeecCCccccceecCCcce-----------ee----------------------------cccccccee
Confidence 899998877766654322110 00000 00 000001111
Q ss_pred cEEEEEecCCcceeEEeecCCeEEEEEcccceEEEE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEe
Q psy4869 1316 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS-LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1394 (2435)
Q Consensus 1316 ~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~-~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~ 1394 (2435)
.........+...+..+..++.+.+|+..+++.... +..+...+..+++++++.+++.+ ++.|++||+.+++++..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~ 276 (337)
T d1pbyb_ 199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred eeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE
Confidence 222233334555566667788899999998875543 45677788999999999998876 589999999999998877
Q ss_pred cccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEEEee
Q psy4869 1395 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHI 1438 (2435)
Q Consensus 1395 ~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~~~~ 1438 (2435)
. +...+.+++|+|+|.+|++++.||.|++||..+.+.++++..
T Consensus 277 ~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 277 P-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp E-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred c-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 4 556789999999999999999999999999999999998863
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.75 E-value=8.6e-18 Score=208.39 Aligned_cols=310 Identities=11% Similarity=0.027 Sum_probs=224.9
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEe-cCCcCEEEEEEcCCCCEEE-EEECCCcEEEEEccCCceeEEEecc
Q psy4869 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMSYDSTLIA-TGSGDRTVKVWGLDYGDCHKSLLAH 1123 (2435)
Q Consensus 1046 l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~-~h~~~V~sl~~spdg~~L~-Sgs~Dg~I~vWd~~t~~~~~~l~~h 1123 (2435)
++|++++++|++++.++.|.+||+.+++.+..+. .|...+.+++|+|||++++ ++..++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 4789999999999999999999999999999887 4566788999999999875 5557899999999999988877543
Q ss_pred C------CCEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCC
Q psy4869 1124 E------DSVTGVTFVPKTHYFFTTS------------KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDST 1185 (2435)
Q Consensus 1124 ~------~~V~~v~fsp~~~~l~s~s------------~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 1185 (2435)
. ..+..++|+|||+++++++ .++.+.+||..+++....+.. ......+..+.+++++.
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT----FPMPRQVYLMRAADDGS 157 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE----EECCSSCCCEEECTTSC
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe----eeccCceEEEEecCCCE
Confidence 2 2356899999999888765 467788999887765544321 12234455666777776
Q ss_pred EEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcccccCce
Q psy4869 1186 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNVYLPLQI 1264 (2435)
Q Consensus 1186 ~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~ 1264 (2435)
.++.+ +.+.+|++.+++.+..+..+ .....+.++|++..++... .++.+.+++.... ......
T Consensus 158 ~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 221 (346)
T d1jmxb_ 158 LYVAG---PDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR------------FKDDKQ 221 (346)
T ss_dssp EEEES---SSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE------------C-----
T ss_pred EEEeC---CcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeee------------eccCce
Confidence 65542 56899999999988777554 3455666788776655444 4555555543211 011112
Q ss_pred EEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcc
Q psy4869 1265 QVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLD 1344 (2435)
Q Consensus 1265 ~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~ 1344 (2435)
.+..+..+..+.+|++....... .........+..+.+++++.+++... ++.+++||..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~ 280 (346)
T d1jmxb_ 222 DPATADLLYGYLSVDLKTGKTHT--------------------QEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLK 280 (346)
T ss_dssp --CCCEEEEEEEEEETTTCCEEE--------------------EEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETT
T ss_pred eEeeccCCceEEEEECCCCceEE--------------------EEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECC
Confidence 23344556678888876332110 11122345677888999998888765 4679999999
Q ss_pred cceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeccc
Q psy4869 1345 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1397 (2435)
Q Consensus 1345 ~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h 1397 (2435)
+++.+..+.. ...+.+++|+|||++|++|+.|+.|++||.++++++..++.+
T Consensus 281 ~~~~~~~~~~-~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 281 QRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp TTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCcEEEEEcC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence 9999888763 346889999999999999999999999999999999887743
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=1.2e-16 Score=197.07 Aligned_cols=264 Identities=12% Similarity=0.084 Sum_probs=201.6
Q ss_pred CEEEEEeCCCeEEEEecCCceeeEEEeeC--CCCCeeEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEEeccC----
Q psy4869 375 QYIASSGYDRQIFIWSVYGECENIGVMSG--HTGAVMDLKFSTDGCHIF-TCSTDQTLAVWDLEKGQRIKKMKGHS---- 447 (2435)
Q Consensus 375 ~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~--h~~~V~~l~~s~dg~~L~-s~s~Dg~I~vwd~~tg~~v~~l~~h~---- 447 (2435)
+||++++.|++|+|||+.+.. .+..+.. +...+..++|+|||++++ +++.++.|.+||+.+++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~-~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMA-VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE-EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCe-EEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence 489999999999999998753 3444443 456688999999999875 55678999999999999998887653
Q ss_pred -ccccccCcccCCCeEEEEEe-----------CCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEE
Q psy4869 448 -TFVNSCDPVRRGQLLIASGS-----------DDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKM 515 (2435)
Q Consensus 448 -~~v~sv~~~~~~~~llasgs-----------~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~l 515 (2435)
..+..+.++|++..+++... .+..+.+||..++.....+.....+..++|+|+|+++++++ +.+.+
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~ 158 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcce
Confidence 34567889999877766543 46789999999999988888888899999999999999986 45788
Q ss_pred EECCCCcEEEEEecCCCCEEEEEEcCCCCEE------------------------EEEECCCcEEEEEcCCCCCCCceEE
Q psy4869 516 WDLRTNSVVQKLRGHSDTVTGLSLSPDGSYI------------------------LSNAMDNTVRIWDIRPYVPGERCVK 571 (2435)
Q Consensus 516 wD~~s~~~v~~l~~h~~~V~~i~~spdg~~l------------------------as~s~Dg~I~lWdl~~~~~~~~~v~ 571 (2435)
||..+++....+..+... ....+.|++..+ ..++.++.+.+||+.. .....
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 233 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET----GEMAM 233 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT----CCEEE
T ss_pred eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCC----CcEEE
Confidence 999999988887544321 112223322211 1122344577888763 22222
Q ss_pred -EEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEe
Q psy4869 572 -VMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLG 650 (2435)
Q Consensus 572 -~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vW 650 (2435)
.+..+ ......+.+++++.+++.+ ++.|++||+++++.+..+ .+...+.+++|+|||++|++++.||.|++|
T Consensus 234 ~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~ 306 (337)
T d1pbyb_ 234 REVRIM----DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp EEEEEC----SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred EEecCC----CcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 22222 2356778999999998776 589999999999999887 467789999999999999999999999999
Q ss_pred cCC
Q psy4869 651 ESP 653 (2435)
Q Consensus 651 d~~ 653 (2435)
|..
T Consensus 307 D~~ 309 (337)
T d1pbyb_ 307 DAE 309 (337)
T ss_dssp ETT
T ss_pred ECC
Confidence 997
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.72 E-value=3.9e-15 Score=187.21 Aligned_cols=329 Identities=8% Similarity=-0.041 Sum_probs=234.8
Q ss_pred CCccceEEEeecCCCCeEEEEE-----cCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEe----------C
Q psy4869 73 GEKHEVCQLSPNHDSSQLAVAY-----TNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGS----------K 137 (2435)
Q Consensus 73 g~~~~v~~~~~~~d~~~lav~~-----~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs----------~ 137 (2435)
++...+..++++|||+++++.. ..+.+.+||..+++.+.++.+|... .++|+|||++|++++ .
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence 3445566889999999998763 2456999999999999999887754 699999999998875 4
Q ss_pred CCCEEEEEccCCeeEEEEecCCCcEE-------EEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEE
Q psy4869 138 DTDIVLWDVVAECGLHRLSGHKGVIT-------DIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVC 210 (2435)
Q Consensus 138 Dg~I~iWd~~~~~~~~~l~gH~~~V~-------~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~ 210 (2435)
|+.|.+||..+.+.+..+..|..... .+.|+++....++.....++.+.+|+...++..... ....++.
T Consensus 96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 171 (373)
T d2madh_ 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYH 171 (373)
T ss_pred ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEE
Confidence 67899999999999888877776553 467776555445555566788999998877654333 3456788
Q ss_pred EEeCCCe-EEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEE
Q psy4869 211 VMREDSY-LISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVF 289 (2435)
Q Consensus 211 ~~p~~~~-l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 289 (2435)
++|+++. +++.+.|+.+.+|+.......... .
T Consensus 172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~--------------------------~--------------------- 204 (373)
T d2madh_ 172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL--------------------------V--------------------- 204 (373)
T ss_pred EecCCCcEEEEEcCCCeEEEEEcCCceeeEEE--------------------------e---------------------
Confidence 9999876 468899999999998754211000 0
Q ss_pred EEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEE
Q psy4869 290 RLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSK 369 (2435)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~ 369 (2435)
.. ....++......+.
T Consensus 205 ---~~-------------------------------------------------------------~~~~~~~~~~~~~~ 220 (373)
T d2madh_ 205 ---GA-------------------------------------------------------------MLTAAQNLLTQPAQ 220 (373)
T ss_pred ---ee-------------------------------------------------------------ccccCccceeeeEE
Confidence 00 00001111122344
Q ss_pred ECCCCCEEEEEeCCCeEEEEecCCcee-eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCc
Q psy4869 370 YHPDGQYIASSGYDRQIFIWSVYGECE-NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHST 448 (2435)
Q Consensus 370 fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~ 448 (2435)
+.+++.++ ..+.++.+.+|+...... .......+......+.+.+.+...++.+.|+....+-.
T Consensus 221 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-------------- 285 (373)
T d2madh_ 221 ANKSGRIV-WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT-------------- 285 (373)
T ss_pred ECCCceEE-EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEec--------------
Confidence 55555444 445788899998765432 23334455666667777776666666666654333221
Q ss_pred cccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCE--EEEEecCCeEEEEECCCCcEEEE
Q psy4869 449 FVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAEC--VLTGGIDNDIKMWDLRTNSVVQK 526 (2435)
Q Consensus 449 ~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~--l~sgs~dg~V~lwD~~s~~~v~~ 526 (2435)
.....++....++.+.+||..+++.+..+.+...+..++|+|||+. +++++.|+.|++||+.+++.++.
T Consensus 286 ---------~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~ 356 (373)
T d2madh_ 286 ---------SEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ---------CCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence 1224456777888999999999999999988889999999999984 46788999999999999999999
Q ss_pred EecCCCCEEEEEEcCC
Q psy4869 527 LRGHSDTVTGLSLSPD 542 (2435)
Q Consensus 527 l~~h~~~V~~i~~spd 542 (2435)
+..+....+.|++.++
T Consensus 357 ~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 357 TVELGSGPQVLSVMNE 372 (373)
T ss_pred ECCCCCCCcEEEEecC
Confidence 9988887888877643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.70 E-value=1.3e-14 Score=182.42 Aligned_cols=314 Identities=9% Similarity=-0.080 Sum_probs=221.4
Q ss_pred cCCCEEEEEEcCCCCEEEEEE-----CCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE----------CC
Q psy4869 1039 LEEQVLCARVSPDSKLLAVSL-----LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS----------GD 1103 (2435)
Q Consensus 1039 ~~~~v~~l~~spdg~~Lavg~-----~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs----------~D 1103 (2435)
..+++..++++|||+.+++.. ..+.|.+||..+++.+..+..+..+ .++|+|||++|+++. .+
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~ 96 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccc
Confidence 457788999999999998763 2357999999999999998877654 689999999998875 35
Q ss_pred CcEEEEEccCCceeEEEeccCCCE-------EEEEEccCCCEEEEEe--CCCcEEEEeCCCcceeEEEEEEEeecccccC
Q psy4869 1104 RTVKVWGLDYGDCHKSLLAHEDSV-------TGVTFVPKTHYFFTTS--KDGRVKQWDADNFERIVTLHFFISLYGHKLP 1174 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l~~h~~~V-------~~v~fsp~~~~l~s~s--~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~ 1174 (2435)
+.|.+||..+++.+..+..+.... ..+.|+++++.++... .++.+.+|+....+... +...
T Consensus 97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~ 166 (373)
T d2madh_ 97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ----------LLSS 166 (373)
T ss_pred eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE----------Eecc
Confidence 789999999999988887655443 4578888888766554 34678888877654332 2334
Q ss_pred eEEEEEeCCCCEE-EEEeCCCcEEEEEccCCceeeEeeccCC------CEEEEEEeeCCCEEEEEECCCcEEEEECCCCc
Q psy4869 1175 VLSLDMSYDSTLI-ATGSGDRTVKVWGLDYGDCHKSLLAHED------SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1247 (2435)
Q Consensus 1175 V~~l~~s~dg~~l-~sgs~Dg~V~iwd~~t~~~~~~~~~h~~------~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~ 1247 (2435)
..++.++++++.+ ++.+.|+.+.+||...++.......+.. ....+.+.+++ .++..+.++.+.+|+.....
T Consensus 167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 245 (373)
T d2madh_ 167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAG 245 (373)
T ss_pred ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCe
Confidence 5678899988755 5778999999999998876655543221 23334444444 45666788999999987765
Q ss_pred eEEEEeeCCccc-------ccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEE
Q psy4869 1248 RIVTLHFNPNVY-------LPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA 1320 (2435)
Q Consensus 1248 ~v~~~~~~~~~~-------~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 1320 (2435)
............ .+.....+..+. ..-...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------d~~~~~ 282 (373)
T d2madh_ 246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLK-------------------------------------------SSDGIY 282 (373)
T ss_pred EEEEEeeccccCcEEeeeeccCcceeeEEec-------------------------------------------CCCeEE
Confidence 432221110000 000000000000 001112
Q ss_pred EecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCCceEEEecccc
Q psy4869 1321 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--LIATGSGDRTVKVWGLDYGDCHKSLLAHE 1398 (2435)
Q Consensus 1321 a~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~--~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~ 1398 (2435)
.+.+++..++....++.+.+||..+++.+..+. +...+..++|+|||+ ++++++.|+.|++||+.+++.++.+..+.
T Consensus 283 ~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g 361 (373)
T d2madh_ 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG 361 (373)
T ss_pred EecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCC
Confidence 233445566667788899999999999888776 456788999999998 45789999999999999999999999887
Q ss_pred cceEEEEEeeC
Q psy4869 1399 DSVTGVTFVPK 1409 (2435)
Q Consensus 1399 ~~V~~laf~P~ 1409 (2435)
...+.|++.++
T Consensus 362 ~~P~~l~~~~~ 372 (373)
T d2madh_ 362 SGPQVLSVMNE 372 (373)
T ss_pred CCCcEEEEecC
Confidence 88888887654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=7.4e-14 Score=171.72 Aligned_cols=278 Identities=9% Similarity=0.134 Sum_probs=196.6
Q ss_pred EEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEe---ccCccc
Q psy4869 376 YIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQRIKKMK---GHSTFV 450 (2435)
Q Consensus 376 ~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~~v~~l~---~h~~~v 450 (2435)
.+++++.|++|++|++.... ........|.+.+..|+|+|||++|++++ .|+.|++|++..+.....+. .+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 35777899999999986432 23333346889999999999999996665 48999999998664333332 234456
Q ss_pred cccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee---cCcccEEEEEECCCCCEEEEEec-CCeEEEEECCCCcEEEE
Q psy4869 451 NSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGI-DNDIKMWDLRTNSVVQK 526 (2435)
Q Consensus 451 ~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~---~~~~~v~sv~~sp~g~~l~sgs~-dg~V~lwD~~s~~~v~~ 526 (2435)
..++|+|++..++++...++.+.+|+.......... .+...+.++.++|+++++++++. +..|.+|+.........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 678999999888887778899999987765543332 45667889999999999888875 46799999876543221
Q ss_pred ------EecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCc--ccccccCeEEEEEcCCCCEEE
Q psy4869 527 ------LRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGH--QHNFEKNLLRCAWSVSGLYVT 597 (2435)
Q Consensus 527 ------l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h--~~~~~~~i~~v~~spdg~~La 597 (2435)
...+......+.|++++..++... ..+...+|++................ ..........+.+++++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence 123455678999999999887655 56778888876433223333333211 112223567789999998776
Q ss_pred Ee-cCCCeEEEEECCCCcEEEEe---cCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEecCC
Q psy4869 598 AG-SADKCVYIWDTTTRRIAYKL---PGHNGSVNDVQFHPKEPIIMSAS-SDKTIYLGESP 653 (2435)
Q Consensus 598 sg-s~Dg~V~iwd~~s~~~~~~l---~~h~~~V~~l~fspd~~~Lasgs-~Dg~I~vWd~~ 653 (2435)
.. ..++.+.+|++........+ ..+...+..++|+|||++|++++ .++.|++|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 65 56789999988755332222 23456788999999999877765 45899999876
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=3e-15 Score=186.62 Aligned_cols=324 Identities=9% Similarity=0.019 Sum_probs=210.6
Q ss_pred EeecCCCCeEEEEEc-----CCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEE----------eCCCCEEEEE
Q psy4869 81 LSPNHDSSQLAVAYT-----NGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATG----------SKDTDIVLWD 145 (2435)
Q Consensus 81 ~~~~~d~~~lav~~~-----~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSg----------s~Dg~I~iWd 145 (2435)
.+++||++++++... .+.+.+||.++++.+.++..+... .++|+|||++|+.. +.|+.|++||
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D 84 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 84 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence 367899999988753 345999999999999999877655 69999999988764 4588999999
Q ss_pred ccCCeeEEEEecCCCc-------EEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeE
Q psy4869 146 VVAECGLHRLSGHKGV-------ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYL 218 (2435)
Q Consensus 146 ~~~~~~~~~l~gH~~~-------V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l 218 (2435)
..+++.+..+..|... ...+.|+++....+++..+.+..+.+||..+++.+..+..+.... .+.......
T Consensus 85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 161 (355)
T d2bbkh_ 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH---IFPTAPDTF 161 (355)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---EEEEETTEE
T ss_pred CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce---EeecCCcce
Confidence 9999988877654432 345788865433333444677889999999999887775543221 222334456
Q ss_pred EEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeeccc
Q psy4869 219 ISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSI 298 (2435)
Q Consensus 219 ~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 298 (2435)
+..+.|+...++.........
T Consensus 162 ~~~~~dg~~~~v~~~~~~~~~----------------------------------------------------------- 182 (355)
T d2bbkh_ 162 FMHCRDGSLAKVAFGTEGTPE----------------------------------------------------------- 182 (355)
T ss_dssp EEEETTSCEEEEECCSSSCCE-----------------------------------------------------------
T ss_pred EEEcCCCCEEEEEecCCCeEE-----------------------------------------------------------
Confidence 666777777766554321100
Q ss_pred ccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEE
Q psy4869 299 TLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIA 378 (2435)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~La 378 (2435)
.++.... ...+...+....+.+++..++
T Consensus 183 ------------------------------~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 210 (355)
T d2bbkh_ 183 ------------------------------ITHTEVF----------------------HPEDEFLINHPAYSQKAGRLV 210 (355)
T ss_dssp ------------------------------EEECCCC----------------------SCTTSCBCSCCEEETTTTEEE
T ss_pred ------------------------------EEecccc----------------------cceecceeeeccccCCCCeEE
Confidence 0000000 001112222345667788888
Q ss_pred EEeCCCeEEEEecCCceee-EEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCccc
Q psy4869 379 SSGYDRQIFIWSVYGECEN-IGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVR 457 (2435)
Q Consensus 379 sgs~Dg~I~iwd~~~~~~~-~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~ 457 (2435)
.++.++.+++|++...... +.....+......+.+.|++...++.+.|+....+.... ....+
T Consensus 211 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~---------~~~~~------- 274 (355)
T d2bbkh_ 211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ---------RDEWR------- 274 (355)
T ss_dssp EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE---------CCTTC-------
T ss_pred EecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEecc---------CCcee-------
Confidence 8999999999998764322 222233433333344445554445555554443332110 00000
Q ss_pred CCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEEecCCCCEE
Q psy4869 458 RGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAE--CVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVT 535 (2435)
Q Consensus 458 ~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~--~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~ 535 (2435)
.......|.+||..+++.+..+.....+.+++|+|||+ +++++..|+.|++||.++++.++++.++...-.
T Consensus 275 -------~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~ 347 (355)
T d2bbkh_ 275 -------HKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 347 (355)
T ss_dssp -------TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCC
T ss_pred -------ecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCcc
Confidence 01123468899999888888877777889999999998 355677799999999999999999987766666
Q ss_pred EEEEcCCC
Q psy4869 536 GLSLSPDG 543 (2435)
Q Consensus 536 ~i~~spdg 543 (2435)
.|.+.++|
T Consensus 348 ~i~~~d~~ 355 (355)
T d2bbkh_ 348 VITTADMG 355 (355)
T ss_dssp EEECCCCC
T ss_pred EEEeCCCC
Confidence 66665543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.60 E-value=3.3e-14 Score=176.91 Aligned_cols=308 Identities=13% Similarity=-0.003 Sum_probs=207.1
Q ss_pred EEcCCCCEEEEEEC-----CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEE----------ECCCcEEEEEc
Q psy4869 1047 RVSPDSKLLAVSLL-----DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG----------SGDRTVKVWGL 1111 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~-----dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sg----------s~Dg~I~vWd~ 1111 (2435)
+.+|||+.+++... ++.|.+||..+++.+..+..+..+ .++|+|||++|++. ..|+.|++||.
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 56899999988753 456999999999999999877655 68999999988764 34789999999
Q ss_pred cCCceeEEEeccCC-------CEEEEEEccCCCEEEEEe--CCCcEEEEeCCCcceeEEEEEEEe-ecccccCeEEEEEe
Q psy4869 1112 DYGDCHKSLLAHED-------SVTGVTFVPKTHYFFTTS--KDGRVKQWDADNFERIVTLHFFIS-LYGHKLPVLSLDMS 1181 (2435)
Q Consensus 1112 ~t~~~~~~l~~h~~-------~V~~v~fsp~~~~l~s~s--~Dg~V~iwD~~~~~~~~~~~~~~~-~~~h~~~V~~l~~s 1181 (2435)
.+++.+..+..+.. ....++|+++++.+++.. .+..+.+|+..+++....+..... ..........+.++
T Consensus 86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355)
T d2bbkh_ 86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC 165 (355)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEc
Confidence 99998888764332 235689999999888775 456799999998877665531000 00011233345566
Q ss_pred CCCCEEEEEe-CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccc
Q psy4869 1182 YDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYL 1260 (2435)
Q Consensus 1182 ~dg~~l~sgs-~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~ 1260 (2435)
+++..++... .++.+.+++...... .+...+....+.+++..++.++.++.+.+|++.......
T Consensus 166 ~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------- 230 (355)
T d2bbkh_ 166 RDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF---------- 230 (355)
T ss_dssp TTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE----------
T ss_pred CCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEE----------
Confidence 6666555433 334445554443321 233445556778888888888999999999987654311
Q ss_pred cCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC-----
Q psy4869 1261 PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD----- 1335 (2435)
Q Consensus 1261 ~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d----- 1335 (2435)
++........... ..........+++++++..+++.+.+
T Consensus 231 -----------------~~~~~~~~~~~~~-------------------~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~ 274 (355)
T d2bbkh_ 231 -----------------LPAVEALTEAERA-------------------DGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 274 (355)
T ss_dssp -----------------CCCEESSCHHHHH-------------------TTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred -----------------EeccCCcccceEe-------------------eeeeccceEEEEEeCCCCeEEEEeccCCcee
Confidence 1100000000000 00000112236788888888776543
Q ss_pred -----CeEEEEEcccceEEEEecCCCCCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEee
Q psy4869 1336 -----TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP 1408 (2435)
Q Consensus 1336 -----G~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~--~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P 1408 (2435)
..|.+||..+++.+..+..+ ..+.+++|+|||+ ++++++.|+.|++||.+++++++.+.++...-..|.+.+
T Consensus 275 ~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d 353 (355)
T d2bbkh_ 275 HKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353 (355)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred ecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence 46999999999988887643 4578999999998 567788899999999999999999887655555555543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=3.6e-13 Score=165.42 Aligned_cols=285 Identities=11% Similarity=0.109 Sum_probs=189.1
Q ss_pred EEEEECCCcEEEEEcCCCeEEE--EEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEe---ccCCCEE
Q psy4869 1055 LAVSLLDTTVKIFFLDTFKFFI--SLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLL---AHEDSVT 1128 (2435)
Q Consensus 1055 Lavg~~dg~V~i~d~~~~~~~~--~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~---~h~~~V~ 1128 (2435)
++++..++.|++|+++....+. ....|.+.+..|+|+|||++|++++ .|+.|++|++........+. .+...+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~ 86 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT 86 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence 3455578999999987543222 2235888999999999999986655 48999999997665333332 3445677
Q ss_pred EEEEccCCCEEEEEeC-CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCCce
Q psy4869 1129 GVTFVPKTHYFFTTSK-DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDC 1206 (2435)
Q Consensus 1129 ~v~fsp~~~~l~s~s~-Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~-Dg~V~iwd~~t~~~ 1206 (2435)
.++|+|++++|++++. ++.|.+|+........... ...+...+.++.+++++++++.++. +..|.+|+......
T Consensus 87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD----VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE----EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred EEEEcCCCCEEeecccCCCceeeeccccccceeccc----ccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence 8999999999998875 6689999877655443332 3356677888999999999888774 46799999876543
Q ss_pred eeEe------eccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEE
Q psy4869 1207 HKSL------LAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQ 1279 (2435)
Q Consensus 1207 ~~~~------~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwd 1279 (2435)
.... ..+......+.|++++..++... ..+...+|+........... ..+..
T Consensus 163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~ 221 (333)
T d1ri6a_ 163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV---------------------QTLDM 221 (333)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE---------------------EEEEC
T ss_pred ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee---------------------eeeee
Confidence 2211 12345668899999888877665 44556666654322110000 00000
Q ss_pred cccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEE-eecCCeEEEEEcccceEEEE---ecCC
Q psy4869 1280 LELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV-SLLDTTVKIFFLDTFKFFIS---LYGH 1355 (2435)
Q Consensus 1280 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lav-gs~dG~V~v~d~~~~k~i~~---~~~h 1355 (2435)
+. ...........+++++|++++.+ +..++.+.+|++........ ...+
T Consensus 222 ~~---------------------------~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (333)
T d1ri6a_ 222 MP---------------------------ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT 274 (333)
T ss_dssp SC---------------------------TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred ee---------------------------cCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC
Confidence 00 00111234556789999987665 45678899999876432222 2233
Q ss_pred CCCeEEEEEecCCCEEEEEe-CCCcEEEE--eCCCCceE
Q psy4869 1356 KLPVLSLDMSYDSTLIATGS-GDRTVKVW--GLDYGDCH 1391 (2435)
Q Consensus 1356 ~~~V~~la~spdg~~L~sGg-~Dg~V~iw--dl~~gk~~ 1391 (2435)
...+..++|+|||++|++++ .++.|++| |.++|++-
T Consensus 275 ~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 275 ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 45678899999999887765 46889998 55677653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.30 E-value=3.1e-10 Score=146.86 Aligned_cols=153 Identities=13% Similarity=0.009 Sum_probs=113.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec-----CCcCEEEEEEcCCCCEEEEEEC---------CCcEEEEE
Q psy4869 1045 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG-----HKLPVLSLDMSYDSTLIATGSG---------DRTVKVWG 1110 (2435)
Q Consensus 1045 ~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~-----h~~~V~sl~~spdg~~L~Sgs~---------Dg~I~vWd 1110 (2435)
.+.|.+|+.++.. .++.+.+||+.+++....+.. |...|.++.|+|||++|+.++. ++.+.+||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 4689999987764 478899999999988766643 4578999999999999998754 56789999
Q ss_pred ccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEE---ee---------cccccCeEEE
Q psy4869 1111 LDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFI---SL---------YGHKLPVLSL 1178 (2435)
Q Consensus 1111 ~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~---~~---------~~h~~~V~~l 1178 (2435)
+++++ +..+..+...+..+.|+|||+.|+.. .++.+++|+...+.......... .. ....+....+
T Consensus 99 ~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~ 176 (470)
T d2bgra1 99 LNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL 176 (470)
T ss_dssp TTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred CCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence 99876 45577788999999999999998885 56789999998876544321000 00 0112334567
Q ss_pred EEeCCCCEEEEEeCCCc-EEEEEc
Q psy4869 1179 DMSYDSTLIATGSGDRT-VKVWGL 1201 (2435)
Q Consensus 1179 ~~s~dg~~l~sgs~Dg~-V~iwd~ 1201 (2435)
.|+|||++|+....|.. |..|++
T Consensus 177 ~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 177 WWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp EECTTSSEEEEEEEECTTCCEEEE
T ss_pred EECCCCCccceeEecCCcCceEEE
Confidence 89999999998875533 555543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.27 E-value=8.8e-11 Score=152.16 Aligned_cols=148 Identities=7% Similarity=0.016 Sum_probs=113.1
Q ss_pred EEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecC-----CCCCEEEEEEcCCCCEEEEEeC---------CCCEEEEE
Q psy4869 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTG-----HKSAITVIQYDPLGHRLATGSK---------DTDIVLWD 145 (2435)
Q Consensus 80 ~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~g-----H~~~V~~l~f~p~g~~laSgs~---------Dg~I~iWd 145 (2435)
.+.|.+|++++. ..+|.+.+||+.+++....+.+ |...|.+++|+|||++||.++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 477999987654 4688899999999988775554 4578999999999999998854 57789999
Q ss_pred ccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccc------------------cceEE
Q psy4869 146 VVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAH------------------LTEVW 207 (2435)
Q Consensus 146 ~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h------------------~~~V~ 207 (2435)
+.+++ +..+..|.+.+..+.|+|+ +..++. ..|+.+.+|+..+|+..+....+ .+...
T Consensus 99 ~~~~~-~~~l~~~~~~~~~~~~SPD--G~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 99 LNKRQ-LITEERIPNNTQWVTWSPV--GHKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp TTTTE-ECCSSCCCTTEEEEEECSS--TTCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCCCc-ccccccCCccccccccccC--cceeeE-eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 99877 4567899999999999864 445665 46788999999999865543221 22345
Q ss_pred EEEEEeCCCeEEEeeCCCc-EEEEEcC
Q psy4869 208 GVCVMREDSYLISGSNDAE-LKVWNVR 233 (2435)
Q Consensus 208 ~l~~~p~~~~l~s~s~Dg~-v~vwdl~ 233 (2435)
++.|+|||++|+....|.+ +..|++.
T Consensus 175 ~~~wSPDGk~ia~~~~d~~~v~~~~~~ 201 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFNDTEVPLIEYS 201 (470)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred ccEECCCCCccceeEecCCcCceEEEE
Confidence 6789999999998776654 5555543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.26 E-value=8.6e-11 Score=146.93 Aligned_cols=297 Identities=8% Similarity=-0.088 Sum_probs=190.8
Q ss_pred CcCEEEEEEcCCCCEEEE---EECCC--cEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEe----------CCC
Q psy4869 1082 KLPVLSLDMSYDSTLIAT---GSGDR--TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS----------KDG 1146 (2435)
Q Consensus 1082 ~~~V~sl~~spdg~~L~S---gs~Dg--~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s----------~Dg 1146 (2435)
.++...++..++++.... ...++ .|.+||..+++.+..+..+... .++|+|+++.|++.+ .|+
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCC
Confidence 344445556677765332 23344 4777799999999888876654 589999999888764 367
Q ss_pred cEEEEeCCCcceeEEEEEEEe-ecccccCeEEEEEeCCCCEEEEEe-CCCcEEEEEccCCceeeEeeccCCCEEEEEEee
Q psy4869 1147 RVKQWDADNFERIVTLHFFIS-LYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP 1224 (2435)
Q Consensus 1147 ~V~iwD~~~~~~~~~~~~~~~-~~~h~~~V~~l~~s~dg~~l~sgs-~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp 1224 (2435)
.|++||..+.+....+..... ..........++|+|||++|+++. .++.+.+||+.+++.+..+..+..... +..
T Consensus 97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~ 173 (368)
T d1mdah_ 97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPG 173 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEE
T ss_pred eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccC
Confidence 899999999887776541000 001112234689999999998876 579999999999998887765544321 122
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceee
Q psy4869 1225 KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLS 1304 (2435)
Q Consensus 1225 d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 1304 (2435)
....++..+.||.+.+|++..............
T Consensus 174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 206 (368)
T d1mdah_ 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQC----------------------------------------------- 206 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEECCCCS-----------------------------------------------
T ss_pred CCceEEEEcCCCCEEEEEecCCceeeeeeeccc-----------------------------------------------
Confidence 345667777888888887754332111100000
Q ss_pred eeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEec--CC----------CCCeEEEEEecCCCEEE
Q psy4869 1305 LLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY--GH----------KLPVLSLDMSYDSTLIA 1372 (2435)
Q Consensus 1305 ~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~--~h----------~~~V~~la~spdg~~L~ 1372 (2435)
..........+.+.+++..+.. .++.++++++.......... .+ ......+++++++..++
T Consensus 207 -----~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 279 (368)
T d1mdah_ 207 -----TGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM 279 (368)
T ss_dssp -----CTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred -----ccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEE
Confidence 0000111223345555544433 34556666655443322111 11 11234578899998776
Q ss_pred EEeCC---------CcEEEEeCCCCceEEEecccccceEEEEEeeCCC--EEEEEeCCCcEEEEECCCceeEEEEee
Q psy4869 1373 TGSGD---------RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH--YFFTTSKDGRVKQWDADNFERIVTLHI 1438 (2435)
Q Consensus 1373 sGg~D---------g~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~--~laSgg~Dg~V~lWd~~~~~~l~~~~~ 1438 (2435)
....+ ..|++||..+++.+..+..+ ..+.+++|+||++ ++++++.|+.|.+||..+.+.++.++.
T Consensus 280 v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEecCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence 65332 35999999999998877543 5789999999986 467888899999999999999998863
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.25 E-value=8.4e-11 Score=147.02 Aligned_cols=298 Identities=8% Similarity=-0.006 Sum_probs=191.1
Q ss_pred EEeecCCCCeEEEEE---cCC--eEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCCEEEE
Q psy4869 80 QLSPNHDSSQLAVAY---TNG--SLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGS----------KDTDIVLW 144 (2435)
Q Consensus 80 ~~~~~~d~~~lav~~---~~G--~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs----------~Dg~I~iW 144 (2435)
..++.+++++..+.. .+| .+.+||.++++.+..+.+|... .++|+|+|+.|+..+ .|+.|.+|
T Consensus 24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~ 101 (368)
T d1mdah_ 24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF 101 (368)
T ss_dssp CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEE
Confidence 456778887755442 334 4778899999999999888765 489999999888754 47889999
Q ss_pred EccCCeeEEEEecCCCc-------EEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCe
Q psy4869 145 DVVAECGLHRLSGHKGV-------ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSY 217 (2435)
Q Consensus 145 d~~~~~~~~~l~gH~~~-------V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~ 217 (2435)
|..+.+.+..+..|... ...++|+|+ +..++++...++.|.+||+.+++.+..+..+.... .+......
T Consensus 102 D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD-Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~ 177 (368)
T d1mdah_ 102 DPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS-SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH---IHPGAAAT 177 (368)
T ss_dssp CTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT-SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC---CEEEETTE
T ss_pred ECCCCcEeeeecCCccceecccCCccceEECCC-CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce---EccCCCce
Confidence 99999988887655432 235889864 33444555678999999999999888776554332 12234556
Q ss_pred EEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecc
Q psy4869 218 LISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISS 297 (2435)
Q Consensus 218 l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 297 (2435)
++..+.||.+.+|++............ .
T Consensus 178 ~v~~~~Dg~~~~~~~~~~~~~~~~~~~--------------~-------------------------------------- 205 (368)
T d1mdah_ 178 HYLGSCPASLAASDLAAAPAAAGIVGA--------------Q-------------------------------------- 205 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCC--------------C--------------------------------------
T ss_pred EEEEcCCCCEEEEEecCCceeeeeeec--------------c--------------------------------------
Confidence 778889999999987753211000000 0
Q ss_pred cccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEE
Q psy4869 298 ITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYI 377 (2435)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~L 377 (2435)
.+..+...+..+.+.+++..+
T Consensus 206 -----------------------------------------------------------~~~~~~~~~~~~~~~~~g~~~ 226 (368)
T d1mdah_ 206 -----------------------------------------------------------CTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp -----------------------------------------------------------SCTTSCBCSCCEEETTTTEEE
T ss_pred -----------------------------------------------------------cccccccceeecccccCcEEE
Confidence 000011111122333333333
Q ss_pred EEEeCCCeEEEEecCCceeeEE-EeeC----------CCCCeeEEEEccCCCEEEEEeCC---------CeEEEEECCCC
Q psy4869 378 ASSGYDRQIFIWSVYGECENIG-VMSG----------HTGAVMDLKFSTDGCHIFTCSTD---------QTLAVWDLEKG 437 (2435)
Q Consensus 378 asgs~Dg~I~iwd~~~~~~~~~-~l~~----------h~~~V~~l~~s~dg~~L~s~s~D---------g~I~vwd~~tg 437 (2435)
.+. .+.+.++++........ .... ..+....+++++++..++....+ ..|.+||..++
T Consensus 227 ~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~ 304 (368)
T d1mdah_ 227 WAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp ECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred Eec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC
Confidence 322 23333333322111100 0000 11223457889988887765332 35999999999
Q ss_pred ceEEEEeccCccccccCcccCCCe-EEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEE
Q psy4869 438 QRIKKMKGHSTFVNSCDPVRRGQL-LIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAF 497 (2435)
Q Consensus 438 ~~v~~l~~h~~~v~sv~~~~~~~~-llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~ 497 (2435)
+.+..+..+ ..+..+.|+|++.. +++++..|+.|++||..+++.+..+......+.|++
T Consensus 305 ~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~ 364 (368)
T d1mdah_ 305 QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSV 364 (368)
T ss_dssp CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred cEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEE
Confidence 988877643 56788999999864 678888999999999999999888876555555554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.19 E-value=2.4e-11 Score=151.28 Aligned_cols=300 Identities=12% Similarity=0.060 Sum_probs=196.2
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEEec------------------------------CCcCEEEEEEcCCCCEEEEEE-CC
Q psy4869 1055 LAVSLLDTTVKIFFLDTFKFFISLYG------------------------------HKLPVLSLDMSYDSTLIATGS-GD 1103 (2435)
Q Consensus 1055 Lavg~~dg~V~i~d~~~~~~~~~l~~------------------------------h~~~V~sl~~spdg~~L~Sgs-~D 1103 (2435)
+++|+.+|.|++|++.+++.++++.. |.-.+......|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 44566789999999999998888632 223344555678999886665 68
Q ss_pred CcEEEEEccCCceeEEEec-cCCCEEEEEEccCCCE--EEEEeCCC-----------------cEEEEeCCCcceeEEEE
Q psy4869 1104 RTVKVWGLDYGDCHKSLLA-HEDSVTGVTFVPKTHY--FFTTSKDG-----------------RVKQWDADNFERIVTLH 1163 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l~~-h~~~V~~v~fsp~~~~--l~s~s~Dg-----------------~V~iwD~~~~~~~~~~~ 1163 (2435)
++|.++|++++++...+.. +......++|+|+++. ++..+.+. .+..+|..+.+....+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 8999999999998887763 6778999999999884 44333321 13456777666555543
Q ss_pred EEEeecccccCeEEEEEeCCCCEEEEEeCCC-cEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEE
Q psy4869 1164 FFISLYGHKLPVLSLDMSYDSTLIATGSGDR-TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1242 (2435)
Q Consensus 1164 ~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg-~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD 1242 (2435)
-......+.++|+|+++++.+.+. .+..++..+.+....+..... -..+.+.|+++++.. +.++.+.+++
T Consensus 174 -------v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~-p~~~~~~~dGk~~~v-~~~~v~vvd~ 244 (441)
T d1qnia2 174 -------VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV-ERIAAAVKAGNFKTI-GDSKVPVVDG 244 (441)
T ss_dssp -------ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH-HHHHHHHHTTCCBCC-TTCCCCEEEC
T ss_pred -------cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc-cceEEEecCCCEEEe-CCCCcEEEEc
Confidence 234567899999999999887653 344455544443333221111 122334566665443 2344444444
Q ss_pred CCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEe
Q psy4869 1243 ADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV 1322 (2435)
Q Consensus 1243 ~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~ 1322 (2435)
......+..+. .......+.+
T Consensus 245 ~~~~~v~~~IP-----------------------------------------------------------vgksPhGv~v 265 (441)
T d1qnia2 245 RGESEFTRYIP-----------------------------------------------------------VPKNPHGLNT 265 (441)
T ss_dssp SSSCSSEEEEC-----------------------------------------------------------CBSSCCCEEE
T ss_pred ccCCceEEEEe-----------------------------------------------------------CCCCccCceE
Confidence 43322222221 1223345789
Q ss_pred cCCcceeEE-eecCCeEEEEEcccceE-----------EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC---
Q psy4869 1323 SPDSKLLAV-SLLDTTVKIFFLDTFKF-----------FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY--- 1387 (2435)
Q Consensus 1323 spdg~~lav-gs~dG~V~v~d~~~~k~-----------i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~--- 1387 (2435)
+|||+++++ +..++.|.|||+++.+. +.......-.....+|+++|+.+.+...|..|..|++..
T Consensus 266 SPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~ 345 (441)
T d1qnia2 266 SPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIK 345 (441)
T ss_dssp CTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHH
T ss_pred CCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhh
Confidence 999998765 67899999999976321 111111112345568999999999999999999999752
Q ss_pred -------CceEEEe-----cccccceEEEEEeeCCCEEEEE---eCCCcE
Q psy4869 1388 -------GDCHKSL-----LAHEDSVTGVTFVPKTHYFFTT---SKDGRV 1422 (2435)
Q Consensus 1388 -------gk~~~~~-----~~h~~~V~~laf~P~~~~laSg---g~Dg~V 1422 (2435)
..++..+ .+|...+.+.+|+|||++|+++ +.|..+
T Consensus 346 ~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~ 395 (441)
T d1qnia2 346 HYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFL 395 (441)
T ss_dssp HHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSC
T ss_pred hhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCc
Confidence 1244444 5888889999999999999999 666543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.18 E-value=9.3e-11 Score=145.92 Aligned_cols=264 Identities=14% Similarity=0.109 Sum_probs=183.1
Q ss_pred EEEEeCCCeEEEEecCCceeeEEE--e---------------------------eCCCCCeeEEEEccCCCEEEEEe-CC
Q psy4869 377 IASSGYDRQIFIWSVYGECENIGV--M---------------------------SGHTGAVMDLKFSTDGCHIFTCS-TD 426 (2435)
Q Consensus 377 Lasgs~Dg~I~iwd~~~~~~~~~~--l---------------------------~~h~~~V~~l~~s~dg~~L~s~s-~D 426 (2435)
+++|+.+|.|++||+......... + ..|..........|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 677889999999998654322111 0 11223334444568999987765 57
Q ss_pred CeEEEEECCCCceEEEEe-ccCccccccCcccCCCeEEEEEeCCCe------------------EEEEeCCCCcceEeec
Q psy4869 427 QTLAVWDLEKGQRIKKMK-GHSTFVNSCDPVRRGQLLIASGSDDCT------------------VKVWDPRKKNQAVSMN 487 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~-~h~~~v~sv~~~~~~~~llasgs~Dg~------------------I~vwD~~~~~~~~~~~ 487 (2435)
+.|.++|+++++....+. .+......++|+++++...+.+..+.. +..+|..+.+...+..
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 899999999999887765 345667788999888765444433333 3558888888887776
Q ss_pred CcccEEEEEECCCCCEEEEEecC-----------------------------------------CeEEEEECCCCcEEEE
Q psy4869 488 NTYQVTSVAFNDTAECVLTGGID-----------------------------------------NDIKMWDLRTNSVVQK 526 (2435)
Q Consensus 488 ~~~~v~sv~~sp~g~~l~sgs~d-----------------------------------------g~V~lwD~~s~~~v~~ 526 (2435)
.......+.|+|+|+++++.+.+ +.+.+++....+.+..
T Consensus 174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~ 253 (441)
T d1qnia2 174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY 253 (441)
T ss_dssp ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence 66778899999999999987643 3444555555566677
Q ss_pred EecCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCCC----CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 527 LRGHSDTVTGLSLSPDGSYILS-NAMDNTVRIWDIRPYVP----GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 527 l~~h~~~V~~i~~spdg~~las-~s~Dg~I~lWdl~~~~~----~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
+..++. ..++.++|||+++++ +..|++|.+||++.... .......+.++. ...-......|.++|+.+.+...
T Consensus 254 IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~-~~glgplh~~fd~~g~~yts~~~ 331 (441)
T d1qnia2 254 IPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP-ELGLGPLHTTFDGRGNAYTTLFI 331 (441)
T ss_dssp ECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETT
T ss_pred EeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec-ccccCcccceecCCceEEEcccc
Confidence 766554 478999999998765 56799999999874210 000001111111 11124577899999999999999
Q ss_pred CCeEEEEECCC----------CcEEEEe-----cCCCCCeeEEEEcCCCCEEEEEE
Q psy4869 602 DKCVYIWDTTT----------RRIAYKL-----PGHNGSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 602 Dg~V~iwd~~s----------~~~~~~l-----~~h~~~V~~l~fspd~~~Lasgs 642 (2435)
|..|..|++.. ...+..+ .||...+.+.+|+|||++|++++
T Consensus 332 ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 332 DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred cceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 99999999741 1244444 57888888999999999999995
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.77 E-value=2.6e-06 Score=105.14 Aligned_cols=249 Identities=12% Similarity=0.118 Sum_probs=151.1
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE--eccCccccccCcccCCCeEEEEEe--CCCeEEEEeCCC
Q psy4869 404 HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM--KGHSTFVNSCDPVRRGQLLIASGS--DDCTVKVWDPRK 479 (2435)
Q Consensus 404 h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l--~~h~~~v~sv~~~~~~~~llasgs--~Dg~I~vwD~~~ 479 (2435)
....+..|+|+++++.|+++.. +.+..|.+.....+... .........+.+.+++..++++.. ..+.+..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence 4556778999999999998865 46777766543222222 222334567788888866544332 234444443221
Q ss_pred ------------CcceE------eecCcccEEEEEECCCCCEEEEEec-CCeEEEEECCC-CcEE--EEE--ecCCCCEE
Q psy4869 480 ------------KNQAV------SMNNTYQVTSVAFNDTAECVLTGGI-DNDIKMWDLRT-NSVV--QKL--RGHSDTVT 535 (2435)
Q Consensus 480 ------------~~~~~------~~~~~~~v~sv~~sp~g~~l~sgs~-dg~V~lwD~~s-~~~v--~~l--~~h~~~V~ 535 (2435)
..... .......+.++.|+|+|+++++++. ...|.+|+... +... ... ........
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr 196 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence 11110 1122335789999999999988865 45788887654 3322 222 23456789
Q ss_pred EEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCC-ceEEEEeCc----------ccccccCeEEEEEcCCCCEEEEecC--
Q psy4869 536 GLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGE-RCVKVMSGH----------QHNFEKNLLRCAWSVSGLYVTAGSA-- 601 (2435)
Q Consensus 536 ~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~-~~v~~~~~h----------~~~~~~~i~~v~~spdg~~Lasgs~-- 601 (2435)
.+.|+|||++++... .+++|.+|++....... ........- ..........+.++|||++|+++..
T Consensus 197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~ 276 (365)
T d1jofa_ 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence 999999999987655 68999999987432110 111111100 0011123457899999999988743
Q ss_pred ----CCeEEEEECCCC-cEE-----EEecCCCCCeeEEEEcC-CCCEEEEEE-CCCcEEEecCC
Q psy4869 602 ----DKCVYIWDTTTR-RIA-----YKLPGHNGSVNDVQFHP-KEPIIMSAS-SDKTIYLGESP 653 (2435)
Q Consensus 602 ----Dg~V~iwd~~s~-~~~-----~~l~~h~~~V~~l~fsp-d~~~Lasgs-~Dg~I~vWd~~ 653 (2435)
.+.|..|++... .+. ..........++++++| +|++|+++. .++.|.+|+++
T Consensus 277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence 234777776543 221 11122445678899998 789776664 66899999875
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.73 E-value=1.5e-06 Score=107.28 Aligned_cols=164 Identities=8% Similarity=-0.028 Sum_probs=109.8
Q ss_pred CCEEEEEEcCCCCEEEEEECC-CcEEEEEcCC-CeEE--EEEe--cCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccC
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLD-TTVKIFFLDT-FKFF--ISLY--GHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDY 1113 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~d-g~V~i~d~~~-~~~~--~~l~--~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t 1113 (2435)
..+.++.|+|||++|++++.. ..|.+|+... ++.. .... ........++|+|+++++++.. .++.|.+|+++.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence 457899999999999988753 5788887653 2222 2222 2345688999999999886555 588999999976
Q ss_pred CceeE--EEe-----------------ccCCCEEEEEEccCCCEEEEEeC-C-----CcEEEEeCCCcceeEEEEEEEee
Q psy4869 1114 GDCHK--SLL-----------------AHEDSVTGVTFVPKTHYFFTTSK-D-----GRVKQWDADNFERIVTLHFFISL 1168 (2435)
Q Consensus 1114 ~~~~~--~l~-----------------~h~~~V~~v~fsp~~~~l~s~s~-D-----g~V~iwD~~~~~~~~~~~~~~~~ 1168 (2435)
++... ... .+......+.++|++++|+++.+ + ..|..|++.....+.........
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 304 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence 64322 111 11223568899999999988753 2 23777877655444333222222
Q ss_pred cccccCeEEEEEeC-CCCEEEEEe-CCCcEEEEEccCC
Q psy4869 1169 YGHKLPVLSLDMSY-DSTLIATGS-GDRTVKVWGLDYG 1204 (2435)
Q Consensus 1169 ~~h~~~V~~l~~s~-dg~~l~sgs-~Dg~V~iwd~~t~ 1204 (2435)
.........++++| +|++|+++. .++.|.+|+++..
T Consensus 305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 23344567789997 789887775 6789999988654
|
| >d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Bleomycin hydrolase species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
Probab=98.67 E-value=4e-09 Score=129.51 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=61.0
Q ss_pred cccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceec---
Q psy4869 2191 IGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLIC--- 2267 (2435)
Q Consensus 2191 v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~--- 2267 (2435)
.+||+||+.-|-|| .||+...|+..+..+.+.. ...||+-+|.-
T Consensus 66 ~~~vtnQ~~SGrCW--------------------------------~FA~ln~lr~~~~~~~~~~-~felSq~Yl~f~dk 112 (458)
T d3gcba_ 66 STPVTNQKSSGRAW--------------------------------LFAATNQLRLNVLSELNLK-EFELSQAYLFFYDK 112 (458)
T ss_dssp CCSCCBCCBSSCHH--------------------------------HHHHHHHHHHHHHHHTTCS-SCCBCHHHHHHHHH
T ss_pred CCCcccCCCCcccH--------------------------------HHhChHHHHHHHHHHcCCC-CeeecHHHHHHhhH
Confidence 58999999999999 9999999999886654422 24499988760
Q ss_pred --ccC-------CCCCCCCC-------CCCCCCCCCChhhHHHHHHHcCccCCCcccCC
Q psy4869 2268 --SCT-------NCTRMHTK-------TPMSMCMGGDSAAAWMYWINAGLVDGGDYGTH 2310 (2435)
Q Consensus 2268 --~~~-------~c~~~~~~-------~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~ 2310 (2435)
.|. +....... .....++||.-..+...++++|++..+.||-.
T Consensus 113 lEKan~fL~~ii~~~~~~~~~R~v~~ll~~~~~DGG~w~m~~nli~KYG~VPk~~ypet 171 (458)
T d3gcba_ 113 LEKANYFLDQIVSSADQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDLYGDL 171 (458)
T ss_dssp HHHHHHHHHHHHHTTTSCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGSCSC
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHhhcccCCCccHHHHHHHHHHcCCCcHhhcCCc
Confidence 000 00000000 01124789999999999999999999999763
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.55 E-value=4.1e-06 Score=98.00 Aligned_cols=238 Identities=7% Similarity=-0.041 Sum_probs=157.0
Q ss_pred CCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceE
Q psy4869 406 GAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV 484 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~ 484 (2435)
-.-.+|+++++|...++.. ..+.+..++...........+.......+++.+++ .++++....+.+++++........
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~~~ 92 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQTVL 92 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTTCSCCEEC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCC-CEEEeeeeeceeeeeeeccceeee
Confidence 3458999999998766654 45667777654332222212222334567777776 466677777777777766555554
Q ss_pred eecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC
Q psy4869 485 SMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV 564 (2435)
Q Consensus 485 ~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~ 564 (2435)
..........++++++|+++++-..+..+..++..................+|+++++|+.+++...++.|..+|...
T Consensus 93 ~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~-- 170 (260)
T d1rwia_ 93 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-- 170 (260)
T ss_dssp CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT--
T ss_pred eeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc--
Confidence 444556788999999999888777778888888766543332222234557899999999888888889999999763
Q ss_pred CCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECC
Q psy4869 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 565 ~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~D 644 (2435)
.....+... .......+++.++|+++++....+.|..++.............-.....|++++++.++++-..+
T Consensus 171 ---~~~~~~~~~---~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~ 244 (260)
T d1rwia_ 171 ---NNQVVLPFT---DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 244 (260)
T ss_dssp ---CCEEECCCS---SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred ---ceeeeeecc---ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence 222222211 11345789999999999888889999988875443222212233567899999999887776666
Q ss_pred CcEEEecC
Q psy4869 645 KTIYLGES 652 (2435)
Q Consensus 645 g~I~vWd~ 652 (2435)
+.|+..+.
T Consensus 245 ~rI~~i~~ 252 (260)
T d1rwia_ 245 DRVVKLTS 252 (260)
T ss_dssp TEEEEECC
T ss_pred CEEEEEeC
Confidence 76665443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.54 E-value=2e-05 Score=94.90 Aligned_cols=237 Identities=11% Similarity=0.072 Sum_probs=155.4
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEe---CCCeEEEEeCCCCcc
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGS---DDCTVKVWDPRKKNQ 482 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs---~Dg~I~vwD~~~~~~ 482 (2435)
..+..++|+++|+++++-..++.|+.||.++++....+.........+++.+++..+++..+ ..+.+...+......
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 34467899999987777667889999998877766666555566778888888855544322 133455666655554
Q ss_pred eEeec---CcccEEEEEECCCCCEEEEEec------CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEE-EECC
Q psy4869 483 AVSMN---NTYQVTSVAFNDTAECVLTGGI------DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILS-NAMD 552 (2435)
Q Consensus 483 ~~~~~---~~~~v~sv~~sp~g~~l~sgs~------dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las-~s~D 552 (2435)
..... ....++.+++.++|++.++... .+.++.++...+.. ..+...-...+.|+|+||++.|+. -+..
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~~~~~pnGia~s~dg~~lyvad~~~ 198 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTA 198 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-EEEeeccceeeeeeeccccceEEEecccC
Confidence 44332 3446889999999986665322 23466666554433 333222345688999999997654 4568
Q ss_pred CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEec------CCCCCe
Q psy4869 553 NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP------GHNGSV 626 (2435)
Q Consensus 553 g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~------~h~~~V 626 (2435)
++|..||+........................-.+++..+|++.++...++.|.+||. .|+.+..+. ++...+
T Consensus 199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~ 277 (319)
T d2dg1a1 199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRS 277 (319)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBC
T ss_pred CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCcee
Confidence 8999999874221111111111111111123457899999999888888999999996 688887774 345568
Q ss_pred eEEEEcCCCCEEEEEECC
Q psy4869 627 NDVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 627 ~~l~fspd~~~Lasgs~D 644 (2435)
++++|.++...++....|
T Consensus 278 ~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 278 THPQFIPGTNQLIICSND 295 (319)
T ss_dssp CEEEECTTSCEEEEEEEC
T ss_pred eeEEEeCCCCEEEEEcCC
Confidence 899999988877665543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.52 E-value=2.1e-05 Score=92.75 Aligned_cols=235 Identities=11% Similarity=0.204 Sum_probs=166.0
Q ss_pred CeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCc------cccccCcccCCCe-EEEEEeCCCeEEEEeCCC
Q psy4869 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHST------FVNSCDPVRRGQL-LIASGSDDCTVKVWDPRK 479 (2435)
Q Consensus 407 ~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~------~v~sv~~~~~~~~-llasgs~Dg~I~vwD~~~ 479 (2435)
....|+++++|+.+++-..++.|++||. .|+.+..+..... ....+.+...... +++..+.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 4578999999987777667788999996 4777776632211 1112333333333 33444556678777764
Q ss_pred CcceEee--cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEE--ecCCCCEEEEEEcCCCCEEEEEECCCcE
Q psy4869 480 KNQAVSM--NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL--RGHSDTVTGLSLSPDGSYILSNAMDNTV 555 (2435)
Q Consensus 480 ~~~~~~~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l--~~h~~~V~~i~~spdg~~las~s~Dg~I 555 (2435)
+.....+ ........+++.++|+++++....+.+.++|.. ++.+..+ ..+......+++.++|+.+++....+.|
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence 4444444 234567899999999988888888889999864 5666666 3456678999999999998888889999
Q ss_pred EEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC-CCeEEEEECCCCcEEEEecC--CCCCeeEEEEc
Q psy4869 556 RIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA-DKCVYIWDTTTRRIAYKLPG--HNGSVNDVQFH 632 (2435)
Q Consensus 556 ~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~-Dg~V~iwd~~s~~~~~~l~~--h~~~V~~l~fs 632 (2435)
++||.. ++.+..+.... .......+++.++|+++++-.. ++.|.+|+. +|+.+..+.. .......|++.
T Consensus 181 ~~~d~~-----G~~~~~~g~~g--~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~ 252 (279)
T d1q7fa_ 181 KVFNYE-----GQYLRQIGGEG--ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM 252 (279)
T ss_dssp EEEETT-----CCEEEEESCTT--TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred eeeecC-----Cceeeeecccc--cccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEe
Confidence 999975 45555553211 1235678999999998887654 457999984 6888777643 33468899999
Q ss_pred CCCCEEEEEECCCcEEEecCC
Q psy4869 633 PKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 633 pd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
|++.++ +++.++.|++|.+.
T Consensus 253 ~dG~l~-V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 253 DDGSVV-LASKDYRLYIYRYV 272 (279)
T ss_dssp TTTEEE-EEETTTEEEEEECS
T ss_pred CCCcEE-EEeCCCeEEEEEee
Confidence 999654 45678999999875
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=3.5e-05 Score=89.85 Aligned_cols=237 Identities=13% Similarity=0.123 Sum_probs=152.5
Q ss_pred eEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC---eEEEEECCCCceEEEEeccCccccccCcccCCCe
Q psy4869 385 QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ---TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQL 461 (2435)
Q Consensus 385 ~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg---~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~ 461 (2435)
.|.|.|..+.... .+..+...+...+|||||++|+-...+. .+.+.+...+.. ..+..+........|+|++..
T Consensus 20 ~l~i~d~dG~~~~--~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGYNQF--VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSCSCE--EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCCCcE--EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCe
Confidence 4666666543222 2334467788999999999998776543 477777766554 344456666777889999988
Q ss_pred EEEEEeCCCeEEEEe--CCCCcceEeecCcccEEEEEECCCCCEEEEEe-cCC--eEEEEECCCCcEEEEEecCCCCEEE
Q psy4869 462 LIASGSDDCTVKVWD--PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG-IDN--DIKMWDLRTNSVVQKLRGHSDTVTG 536 (2435)
Q Consensus 462 llasgs~Dg~I~vwD--~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg--~V~lwD~~s~~~v~~l~~h~~~V~~ 536 (2435)
++.....++...++. ....................++++++.++... .+| .|.++++..+.. ..+..+......
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEE
T ss_pred eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccc
Confidence 877766665443333 33333333334445555667778777666554 344 466677766643 334455667788
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC---CCeEEEEECCC
Q psy4869 537 LSLSPDGSYILSNAM-DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA---DKCVYIWDTTT 612 (2435)
Q Consensus 537 i~~spdg~~las~s~-Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~---Dg~V~iwd~~s 612 (2435)
..|+|+++.++..+. .+...+|..... ......+... .......|+|||++|+-.+. ...|+++++..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~-----~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg 247 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLA---TGGVQVLSST-----FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 247 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETT---TCCEEECCCS-----SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred cccccccceeEEEeecCCceeeeEeecc---cccceEeecC-----ccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 899999999887664 445555554421 2222223221 23456789999999876543 45789999976
Q ss_pred CcEEEEecCCCCCeeEEEEcCC
Q psy4869 613 RRIAYKLPGHNGSVNDVQFHPK 634 (2435)
Q Consensus 613 ~~~~~~l~~h~~~V~~l~fspd 634 (2435)
+.. ..+....+.+...+|+|-
T Consensus 248 ~~~-~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 248 RFK-ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp CCE-EECCCSSSEEEEEEECCC
T ss_pred CCE-EEEeCCCCcEEeEEeCCC
Confidence 665 456667788889999984
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=1.6e-05 Score=92.87 Aligned_cols=219 Identities=14% Similarity=0.134 Sum_probs=137.5
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCC---eEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC-Ce--EEEE
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDR---QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD-QT--LAVW 432 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg---~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-g~--I~vw 432 (2435)
..+...+..-+|||||++||-..... .+.+.+..+.. ...+..+.+......|+|+|+.++..... +. +..+
T Consensus 35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~ 112 (269)
T d2hqsa1 35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 112 (269)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCeeeEeeecCCccceeec
Confidence 34566788899999999998765433 35555555433 33455678889999999999998876643 33 3333
Q ss_pred ECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCe--EEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC
Q psy4869 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT--VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID 510 (2435)
Q Consensus 433 d~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~--I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d 510 (2435)
.......... ..+........+.+.+...+++...++. |.+.++..+................|+|+++.++..+.+
T Consensus 113 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 191 (269)
T d2hqsa1 113 DLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN 191 (269)
T ss_dssp ETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred ccccccceee-eeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeec
Confidence 3323322222 2222222333455666667777666664 555566666555455556667788999999998887665
Q ss_pred C---eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCCCCCceEEEEeCcccccccCe
Q psy4869 511 N---DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM---DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL 584 (2435)
Q Consensus 511 g---~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~---Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i 584 (2435)
+ .|.++|...+.. .+..+........|+|||++|+-.+. ...|.++++.. ... ..+... ...+
T Consensus 192 ~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg----~~~-~~lt~~----~g~~ 260 (269)
T d2hqsa1 192 GGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG----RFK-ARLPAT----DGQV 260 (269)
T ss_dssp SSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS----CCE-EECCCS----SSEE
T ss_pred CCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC----CCE-EEEeCC----CCcE
Confidence 4 455566665543 33345566778899999999885443 34678888863 222 233322 2345
Q ss_pred EEEEEcC
Q psy4869 585 LRCAWSV 591 (2435)
Q Consensus 585 ~~v~~sp 591 (2435)
...+|||
T Consensus 261 ~~p~WSP 267 (269)
T d2hqsa1 261 KFPAWSP 267 (269)
T ss_dssp EEEEECC
T ss_pred EeEEeCC
Confidence 6778988
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.41 E-value=1.8e-05 Score=94.71 Aligned_cols=229 Identities=13% Similarity=0.061 Sum_probs=155.7
Q ss_pred CeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc----
Q psy4869 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ---- 482 (2435)
Q Consensus 407 ~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~---- 482 (2435)
.+..+++++||+++++...++.|..||.. ++ ...+......+..+++.+++. ++++...++.+..|+......
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccceee
Confidence 57789999999999998889999888864 33 334445566788999999985 566666677777776543322
Q ss_pred eEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEec----------CCCCEEEEEEcCCCCEEEEEECC
Q psy4869 483 AVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG----------HSDTVTGLSLSPDGSYILSNAMD 552 (2435)
Q Consensus 483 ~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~----------h~~~V~~i~~spdg~~las~s~D 552 (2435)
+.........+.+++.++|+++++-..++.+..+|...+.....+.. .......+.++. +.++++.+..
T Consensus 106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~ 184 (302)
T d2p4oa1 106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEK 184 (302)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTT
T ss_pred ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCC
Confidence 22223455689999999999988888899999999988764433211 112456676653 3445566678
Q ss_pred CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc-EEEEecCCCCCeeEEEE
Q psy4869 553 NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR-IAYKLPGHNGSVNDVQF 631 (2435)
Q Consensus 553 g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~-~~~~l~~h~~~V~~l~f 631 (2435)
+.|..+++........ ...+... .....+++.++|+++++...++.|..++..... .+......-..+++++|
T Consensus 185 ~~i~~~~~~~~~~~~~-~~~~~~~-----~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vaf 258 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGE-PEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAF 258 (302)
T ss_dssp TEEEEEEBCTTSCBCC-CEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEE
T ss_pred CeEEeccccccccccc-cccccCC-----CCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEE
Confidence 8898888764321111 1111111 123458999999998888889999999875432 23333334466899999
Q ss_pred ---cCCCCEEEEEECCC
Q psy4869 632 ---HPKEPIIMSASSDK 645 (2435)
Q Consensus 632 ---spd~~~Lasgs~Dg 645 (2435)
.+|++.|+.++..|
T Consensus 259 g~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 259 GQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp CCSTTTTTEEEEEECTT
T ss_pred cCCCCCCCEEEEECCCC
Confidence 67888888776654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.37 E-value=3.1e-05 Score=92.88 Aligned_cols=242 Identities=11% Similarity=0.128 Sum_probs=156.2
Q ss_pred CCeeEEEEccCCCEEEEEeC-------CCeEEEEECCCCceEEEEecc----CccccccCcccCCCeEEEEEeCCCeEEE
Q psy4869 406 GAVMDLKFSTDGCHIFTCST-------DQTLAVWDLEKGQRIKKMKGH----STFVNSCDPVRRGQLLIASGSDDCTVKV 474 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~-------Dg~I~vwd~~tg~~v~~l~~h----~~~v~sv~~~~~~~~llasgs~Dg~I~v 474 (2435)
.....++|.++|+.+++... ++.|..||..+++........ ......+.+.+++..++++ ...+.|..
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~va-d~~~~i~~ 96 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEE-ECCCeEEE
Confidence 34567899999987766433 357889998887654433221 1223467788887665554 44566888
Q ss_pred EeCCCCcceEeec-C----cccEEEEEECCCCCEEEEEec---------------CCeEEEEECCCCcEEEEEecCCCCE
Q psy4869 475 WDPRKKNQAVSMN-N----TYQVTSVAFNDTAECVLTGGI---------------DNDIKMWDLRTNSVVQKLRGHSDTV 534 (2435)
Q Consensus 475 wD~~~~~~~~~~~-~----~~~v~sv~~sp~g~~l~sgs~---------------dg~V~lwD~~s~~~v~~l~~h~~~V 534 (2435)
+|........... . -...+.++++++|++.++-.. .|.|+.++.. ++..... .+-..-
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~p 174 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFP 174 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSE
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCccee
Confidence 8876554322211 1 123678999999988776422 3456666543 3333222 223345
Q ss_pred EEEEEcCCCC-----EEEEEECCCcEEEEEcCCCCCCCceE--EEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEE
Q psy4869 535 TGLSLSPDGS-----YILSNAMDNTVRIWDIRPYVPGERCV--KVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYI 607 (2435)
Q Consensus 535 ~~i~~spdg~-----~las~s~Dg~I~lWdl~~~~~~~~~v--~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~i 607 (2435)
+.|+|+|++. ++++-+..+.|..||+... .... ..+...........-.+++..+|++.++....+.|.+
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~---g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP---AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET---TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEeeccCc---cccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence 7899999865 4445567889999998632 1111 1111111111123457899999998888888899999
Q ss_pred EECCCCcEEEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEecCC
Q psy4869 608 WDTTTRRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESP 653 (2435)
Q Consensus 608 wd~~s~~~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~I~vWd~~ 653 (2435)
||.+.++++..+..+...+++++|.|+++ ++++.+.+|.|+..+++
T Consensus 252 ~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 99998888777777777899999999997 55666677888887776
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.37 E-value=8.9e-05 Score=87.21 Aligned_cols=243 Identities=13% Similarity=0.137 Sum_probs=154.5
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCC-CEEEEE-eCCCcEEEEEccC
Q psy4869 1126 SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS-TLIATG-SGDRTVKVWGLDY 1203 (2435)
Q Consensus 1126 ~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~sg-s~Dg~V~iwd~~t 1203 (2435)
....|+++++++.+++-..++.|++||.+ ++.+..+...............+++..+. ..+++. +.++.|..++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 45789999999977777778899999965 44443332110011122234556665544 344433 344577777764
Q ss_pred CceeeEee-ccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccc
Q psy4869 1204 GDCHKSLL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLEL 1282 (2435)
Q Consensus 1204 ~~~~~~~~-~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~ 1282 (2435)
++....+. ........+++.++++.+++....+.+.++|... +.+ ..+...
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~--------------------------~~~g~~- 153 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVL--------------------------HKFGCS- 153 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE--------------------------EEEECT-
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-cee--------------------------eccccc-
Confidence 55555553 3344567777777776666555555555544321 111 111100
Q ss_pred ccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEec--CCCCCeE
Q psy4869 1283 VSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY--GHKLPVL 1360 (2435)
Q Consensus 1283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~--~h~~~V~ 1360 (2435)
........+++.++|+.+++....+.|++|+. .++.+..+. +......
T Consensus 154 -----------------------------~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~ 203 (279)
T d1q7fa_ 154 -----------------------------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPI 203 (279)
T ss_dssp -----------------------------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEE
T ss_pred -----------------------------ccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCc
Confidence 01234567788899999999889999999986 456666663 3455688
Q ss_pred EEEEecCCCEEEEEeC-CCcEEEEeCCCCceEEEeccc--ccceEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1361 SLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHKSLLAH--EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1361 ~la~spdg~~L~sGg~-Dg~V~iwdl~~gk~~~~~~~h--~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
.|+++++|+++++-.. ++.|.+|+ .+|+.+..+... ......|++.|++.++++ ..+++|++|++...
T Consensus 204 giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 204 GVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence 9999999997777544 45799998 458877665432 235789999999976664 57899999998754
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.36 E-value=9.8e-06 Score=94.67 Aligned_cols=239 Identities=10% Similarity=-0.003 Sum_probs=145.2
Q ss_pred CCCeEEEEEEecCCCEEEEEe-CCCeEEEEEccCCc-eeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeE
Q psy4869 924 TGSYALSVCFVPGDRHVLVGT-KDGRLLIVDIGAGE-ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSV 1001 (2435)
Q Consensus 924 ~~~~v~~vafspdg~~Lavg~-~dg~V~vwd~~sg~-~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V 1001 (2435)
....+.+|++.++|+..++.. ..+++..++..... ......+. .....|++.+++ ..+++....+.+
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g----------~i~v~d~~~~~i 80 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAG----------TVYVTDFNNRVV 80 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTC----------CEEEEETTTEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCC----------CEEEeeeeecee
Confidence 345678899999999666544 55777776654332 22222222 234667777765 355554444444
Q ss_pred EEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecC
Q psy4869 1002 KLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGH 1081 (2435)
Q Consensus 1002 ~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h 1081 (2435)
++++-.... . .........+.+++++++|+++++-..+..+..++............-
T Consensus 81 ~~~~~~~~~-----------------~-----~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (260)
T d1rwia_ 81 TLAAGSNNQ-----------------T-----VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG 138 (260)
T ss_dssp EECTTCSCC-----------------E-----ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS
T ss_pred eeeeeccce-----------------e-----eeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecc
Confidence 443321100 0 001112356789999999997776655666777776544332222222
Q ss_pred CcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEE
Q psy4869 1082 KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1161 (2435)
Q Consensus 1082 ~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~ 1161 (2435)
.....+|++.++++++++...++.|..++.+...........-.....|++.++++++++....+.|..++........
T Consensus 139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~- 217 (260)
T d1rwia_ 139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV- 217 (260)
T ss_dssp CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE-
T ss_pred cCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE-
Confidence 2345789999999988888888899999977554333223445567899999999887777778888888865432211
Q ss_pred EEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q psy4869 1162 LHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1162 ~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~ 1201 (2435)
+ ....-.....|++.++|+++++-..++.|+.++.
T Consensus 218 ~-----~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 218 L-----PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp C-----CCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred E-----ccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 1 1122345678999999887776666666665554
|
| >d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Bleomycin hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=5.1e-07 Score=109.77 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=60.6
Q ss_pred cccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceec---
Q psy4869 2191 IGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLIC--- 2267 (2435)
Q Consensus 2191 v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~--- 2267 (2435)
.+||.||+.-|-|| .||+...++..+..+.+.. ...||+-+++-
T Consensus 60 ~~~vtnQk~SGrCW--------------------------------~Fa~LN~lR~~~~k~~~~~-~felSq~Yl~f~dk 106 (453)
T d2cb5a_ 60 GKPITNQKSSGRSW--------------------------------IFSCLNVMRLPFMKKLNIE-EFEFSQSYLFFWDK 106 (453)
T ss_dssp CSSCCBCCBSSCHH--------------------------------HHHHHHHHHHHHHHHTTCS-CCCBCHHHHHHHHH
T ss_pred CCccccCCCCcccH--------------------------------HHhChHHHHHHHHHHcCCC-CeehhhHHHHHHHH
Confidence 37999999999999 9999999999887654432 34499988760
Q ss_pred --cc----------CC-CCCCCCC-----CCCCCCCCCChhhHHHHHHHcCccCCCcccC
Q psy4869 2268 --SC----------TN-CTRMHTK-----TPMSMCMGGDSAAAWMYWINAGLVDGGDYGT 2309 (2435)
Q Consensus 2268 --~~----------~~-c~~~~~~-----~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~ 2309 (2435)
.| .+ |...... ..+..++||.-..+...++++|++..+.||-
T Consensus 107 lEKaN~fL~~ii~~~~~~~~~d~R~v~~ll~~p~~DGGqw~m~~nli~KYGvVPk~~~pe 166 (453)
T d2cb5a_ 107 VERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPE 166 (453)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHhhCCCCCCcchHHHHHHHHHcCcccHhhCCC
Confidence 00 01 0000000 0012478999999999999999999999974
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=3.6e-05 Score=97.60 Aligned_cols=340 Identities=13% Similarity=0.127 Sum_probs=184.4
Q ss_pred EecCCCcEEEEecCCcEEEEeCCCCceeEEEeC----CCeEEEEEEecCCCEEEEEeC---------CCeEEEEEccCCc
Q psy4869 892 AFSSDNLALVSACASQVKIWNRPSLSCLRTIDT----GSYALSVCFVPGDRHVLVGTK---------DGRLLIVDIGAGE 958 (2435)
Q Consensus 892 a~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~----~~~v~~vafspdg~~Lavg~~---------dg~V~vwd~~sg~ 958 (2435)
.|.+|+.++....++.|.+||+.+++....+.. ...+....||||+++|+...+ .+.+.++|+.++.
T Consensus 23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~ 102 (465)
T d1xfda1 23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (465)
T ss_dssp CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence 477787777666678899999988876544442 234556789999999988653 5788999999887
Q ss_pred eeecc--cccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 959 ILEDI--PAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1036 (2435)
Q Consensus 959 ~v~~~--~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (2435)
...-. ......+....|+|++ ..+|-.. ++.|.+.+...+.....-..... ..+..-.....
T Consensus 103 ~~~l~~~~~~~~~l~~~~wSPDG----------~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~-----~~i~nG~~d~v 166 (465)
T d1xfda1 103 PQSLDPPEVSNAKLQYAGWGPKG----------QQLIFIF-ENNIYYCAHVGKQAIRVVSTGKE-----GVIYNGLSDWL 166 (465)
T ss_dssp CEECCCTTCCSCCCSBCCBCSST----------TCEEEEE-TTEEEEESSSSSCCEEEECCCBT-----TTEEEEECCHH
T ss_pred eeeccCccCCccccceeeeccCC----------ceEEEEe-cceEEEEecCCCceEEEecccCc-----ceeeccccchh
Confidence 54332 2223345557788876 4565544 57777777643321111000000 00000000000
Q ss_pred c--ccCCCEEEEEEcCCCCEEEEEECC-CcEEE---------------------------------EEcCCCeEEEEEe-
Q psy4869 1037 L--KLEEQVLCARVSPDSKLLAVSLLD-TTVKI---------------------------------FFLDTFKFFISLY- 1079 (2435)
Q Consensus 1037 ~--~~~~~v~~l~~spdg~~Lavg~~d-g~V~i---------------------------------~d~~~~~~~~~l~- 1079 (2435)
. +..+.-.++.|||||++||....| ..|.. ++++++.......
T Consensus 167 yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~ 246 (465)
T d1xfda1 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP 246 (465)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred hhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEec
Confidence 0 111223578899999999987432 33333 3333221111100
Q ss_pred -----cCCcCEEEEEEcCCCCEEEEEEC-C---CcEEEEEccCCceeEEEeccC-CCE----EEEEEccCCCEEE---EE
Q psy4869 1080 -----GHKLPVLSLDMSYDSTLIATGSG-D---RTVKVWGLDYGDCHKSLLAHE-DSV----TGVTFVPKTHYFF---TT 1142 (2435)
Q Consensus 1080 -----~h~~~V~sl~~spdg~~L~Sgs~-D---g~I~vWd~~t~~~~~~l~~h~-~~V----~~v~fsp~~~~l~---s~ 1142 (2435)
....-+..+.|++++++++.... + ..|.++|..+|++...+..+. ..| ....|.++|+.++ ..
T Consensus 247 ~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s 326 (465)
T d1xfda1 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (465)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred cCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEee
Confidence 11223677899999886665332 2 257888999998766554322 222 3457888887432 22
Q ss_pred eCCC--cEEEEeCC------CcceeEEEEEEEeecccccCeEEE-EEeCCCCEEE-EEeCC--Cc--EEEEEccCCceee
Q psy4869 1143 SKDG--RVKQWDAD------NFERIVTLHFFISLYGHKLPVLSL-DMSYDSTLIA-TGSGD--RT--VKVWGLDYGDCHK 1208 (2435)
Q Consensus 1143 s~Dg--~V~iwD~~------~~~~~~~~~~~~~~~~h~~~V~~l-~~s~dg~~l~-sgs~D--g~--V~iwd~~t~~~~~ 1208 (2435)
..+| .+..+++. .+.....+ ....-.|..+ .|+.+++.|+ ++..+ +. ++-.++..+....
T Consensus 327 e~~g~~~ly~~~~~~~~~~~~~~~~~~L------T~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~ 400 (465)
T d1xfda1 327 PQGGRGKFYHITVSSSQPNSSNDNIQSI------TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ 400 (465)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBS------CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB
T ss_pred eecccCceEEEEeccccccCCCceeEEe------ccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcce
Confidence 2333 34433321 11111111 1223345554 5888777665 44433 22 4333444332222
Q ss_pred Ee---eccCCCEEEEEEeeCCCEEEEEECC---CcEEEEECCCCceEEEEe
Q psy4869 1209 SL---LAHEDSVTGVTFVPKTHYFFTTSKD---GRVKQWDADNFERIVTLH 1253 (2435)
Q Consensus 1209 ~~---~~h~~~V~~i~~spd~~~lvsgs~D---g~I~vwD~~~~~~v~~~~ 1253 (2435)
.+ .........+.|+|++++++..... -.+.+++..+.+.+..+.
T Consensus 401 ~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 401 CLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp CSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred eeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 11 1344567899999999998855432 346666666666655553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.32 E-value=4e-05 Score=91.48 Aligned_cols=242 Identities=12% Similarity=0.033 Sum_probs=157.7
Q ss_pred CceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEE
Q psy4869 916 LSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTG 995 (2435)
Q Consensus 916 ~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sg 995 (2435)
.+.+..++.+..+..++++|||+++++...+++|+.||.. |+.. .+......+.+++|.+++ +.+++.
T Consensus 18 ~~v~~~~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~-~~~~~~~~~~gla~~~dG----------~l~v~~ 85 (302)
T d2p4oa1 18 AKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQ-IHATVEGKVSGLAFTSNG----------DLVATG 85 (302)
T ss_dssp EEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEEECSSEEEEEEECTTS----------CEEEEE
T ss_pred ccEEEECCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEE-EEEcCCCCcceEEEcCCC----------CeEEEe
Confidence 3445666666678889999999999888889999998865 4422 233445678999999886 577777
Q ss_pred eCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE
Q psy4869 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFF 1075 (2435)
Q Consensus 996 s~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~ 1075 (2435)
..++.+.+|+.....- ..... ...........+++.++|+++++-..++.+..++...+...
T Consensus 86 ~~~~~~~~~~~~~~~~---------------~~~~~---~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~ 147 (302)
T d2p4oa1 86 WNADSIPVVSLVKSDG---------------TVETL---LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 147 (302)
T ss_dssp ECTTSCEEEEEECTTS---------------CEEEE---EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCceEEEEEeccccc---------------ceeec---cccCCccccceeEEccCCCEEeeccccccceeeeccCCcce
Confidence 7788888887642110 00000 01122356788999999998888777888888887766543
Q ss_pred EEEe----------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE--EEeccCCCEEEEEEccCCCEEEEEe
Q psy4869 1076 ISLY----------GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK--SLLAHEDSVTGVTFVPKTHYFFTTS 1143 (2435)
Q Consensus 1076 ~~l~----------~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~--~l~~h~~~V~~v~fsp~~~~l~s~s 1143 (2435)
.... ........+.+.. +.++++....+.|..++........ ...........++|.++|+++++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~ 226 (302)
T d2p4oa1 148 IWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH 226 (302)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred eEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc
Confidence 3322 1122356676653 3455566778888888876543221 1112333456799999999888888
Q ss_pred CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEE---eCCCCEEEEEeCC
Q psy4869 1144 KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM---SYDSTLIATGSGD 1193 (2435)
Q Consensus 1144 ~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~---s~dg~~l~sgs~D 1193 (2435)
.++.|..++.... . ..+ ......-....+++| .+|++.|++++..
T Consensus 227 ~~~~V~~i~p~G~-~-~~~---~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 227 IYNSVVRIAPDRS-T-TII---AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp TTCCEEEECTTCC-E-EEE---ECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCcEEEECCCCC-E-EEE---EecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 8899999987542 1 111 112233456789999 5678888776543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.30 E-value=0.00014 Score=87.10 Aligned_cols=202 Identities=13% Similarity=0.139 Sum_probs=133.4
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCc----CEEEEEEcCCCCEEEEEEC--------------
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL----PVLSLDMSYDSTLIATGSG-------------- 1102 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~----~V~sl~~spdg~~L~Sgs~-------------- 1102 (2435)
+....++|+++|+.|+++.....|..++.+............+ ..+.+++.++|++.++-..
T Consensus 71 g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred CcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence 3577899999999999888777788888776543222221111 3578999999987776321
Q ss_pred -CCcEEEEEccCCceeEEEeccCCCEEEEEEccCCC----EEE-EEeCCCcEEEEeCCCcceeEEEEEEEeecc-cccCe
Q psy4869 1103 -DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH----YFF-TTSKDGRVKQWDADNFERIVTLHFFISLYG-HKLPV 1175 (2435)
Q Consensus 1103 -Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~----~l~-s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~-h~~~V 1175 (2435)
+|.|..++. .++..... ..-..-+.++|+++++ .|+ +-+..+.|..||+.....+........+.. .....
T Consensus 151 ~~G~v~~~~~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p 228 (314)
T d1pjxa_ 151 KFGSIYCFTT-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA 228 (314)
T ss_dssp SCEEEEEECT-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred CCceEEEEee-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccc
Confidence 233444443 34433322 2333457899998764 444 446778899998765444332222222222 22345
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEE-EEEECCCcEEEEECC
Q psy4869 1176 LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF-FTTSKDGRVKQWDAD 1244 (2435)
Q Consensus 1176 ~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~l-vsgs~Dg~I~vwD~~ 1244 (2435)
-.+++..+|++.++....+.|.+||.+.++.+..+.......++++|.|+++.| ++.+.++.|...|+.
T Consensus 229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 679999999988887788999999999888777776666788999999988755 444566777777654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=7.6e-05 Score=94.55 Aligned_cols=387 Identities=11% Similarity=0.085 Sum_probs=203.2
Q ss_pred EeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEc---------CCeEEE
Q psy4869 31 LKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYT---------NGSLKT 101 (2435)
Q Consensus 31 ~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~---------~G~i~i 101 (2435)
.|.+++.|+....+|.|.+||+.+++........+.+ ...+....++||++.++.+.. .|.+.+
T Consensus 23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i 95 (465)
T d1xfda1 23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIE-------SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (465)
T ss_dssp CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTT-------TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCcccc-------ccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence 4788888887777889999999877644322221111 113446789999999888754 467889
Q ss_pred EECCCCCeEEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEE
Q psy4869 102 FSLDTTDVISTF--TGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSS 179 (2435)
Q Consensus 102 ~d~~~~~~~~~l--~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~ 179 (2435)
+|+.++...... ......+....|+|+|+.||=.. ++.|.+.+...+..++.... .....+..|
T Consensus 96 ~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~-------------g~~~~i~nG 161 (465)
T d1xfda1 96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVST-------------GKEGVIYNG 161 (465)
T ss_dssp EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECC-------------CBTTTEEEE
T ss_pred EEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecc-------------cCcceeecc
Confidence 999988765432 23345566789999999987764 66777777766554433211 111112222
Q ss_pred eCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEee-CCCcEEEEEcCCCCCccccchhhhhhhcceeecccC
Q psy4869 180 AKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGS-NDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSED 258 (2435)
Q Consensus 180 s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s-~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (2435)
-.| |-.+ .++. +.-.++.|+|||++|+... ++..|..+.+.......
T Consensus 162 ~~d-----~vye-----ee~~---~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~------------------- 209 (465)
T d1xfda1 162 LSD-----WLYE-----EEIL---KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI------------------- 209 (465)
T ss_dssp ECC-----HHHH-----HTTS---SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS-------------------
T ss_pred ccc-----hhhh-----hhhc---cccceEEECCCCCeEEEEEecccccceeecccccccc-------------------
Confidence 222 1110 0111 1124677999999988765 45667777665321100
Q ss_pred CCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceee
Q psy4869 259 EPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKV 338 (2435)
Q Consensus 259 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~ 338 (2435)
.+.. ..+.. ...|... ....+.++|.+.....
T Consensus 210 ~p~~--~~~~Y--------p~~G~~n--------------------------------------p~~~l~v~d~~~~~~~ 241 (465)
T d1xfda1 210 YPTV--KPYHY--------PKAGSEN--------------------------------------PSISLHVIGLNGPTHD 241 (465)
T ss_dssp SCCC--EEEEC--------CBTTSCC--------------------------------------CEEEEEEEESSSSCCC
T ss_pred ccee--eeeec--------cccCCCC--------------------------------------CceeEEEEecCCCcEE
Confidence 0000 00000 0001000 0112334444332111
Q ss_pred eeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeC-C---CeEEEEecCCceeeEEEeeCCCCCe----eE
Q psy4869 339 QKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGY-D---RQIFIWSVYGECENIGVMSGHTGAV----MD 410 (2435)
Q Consensus 339 ~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~-D---g~I~iwd~~~~~~~~~~l~~h~~~V----~~ 410 (2435)
... .|......+..-+..+.|+|++++++.... + ..|.++|..++...........+.| ..
T Consensus 242 ~~~-----------~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~ 310 (465)
T d1xfda1 242 LEM-----------MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (465)
T ss_dssp EEC-----------CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEE-----------eccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCc
Confidence 100 000111223334677899999987665432 2 2577788776543332222223332 34
Q ss_pred EEEccCCCEEEE--Ee-CCC--eEEEEECC------CCceEEEEeccCcccccc-CcccCCCeEEEEEeCCC----eEEE
Q psy4869 411 LKFSTDGCHIFT--CS-TDQ--TLAVWDLE------KGQRIKKMKGHSTFVNSC-DPVRRGQLLIASGSDDC----TVKV 474 (2435)
Q Consensus 411 l~~s~dg~~L~s--~s-~Dg--~I~vwd~~------tg~~v~~l~~h~~~v~sv-~~~~~~~~llasgs~Dg----~I~v 474 (2435)
..|++||+.++- .+ .+| .+...++. .++.+..+....-.|..+ .|...+..+..++..++ .+.-
T Consensus 311 p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~ 390 (465)
T d1xfda1 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (465)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred eeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEE
Confidence 678899875332 22 233 34333321 222222332222223332 45566666666655432 2333
Q ss_pred EeCCCCcceEe----ecCcccEEEEEECCCCCEEEEEecC---CeEEEEECCCCcEEEEEec
Q psy4869 475 WDPRKKNQAVS----MNNTYQVTSVAFNDTAECVLTGGID---NDIKMWDLRTNSVVQKLRG 529 (2435)
Q Consensus 475 wD~~~~~~~~~----~~~~~~v~sv~~sp~g~~l~sgs~d---g~V~lwD~~s~~~v~~l~~ 529 (2435)
.++........ ........++.|+|++++++..... -.+.+++..+++.+..++.
T Consensus 391 v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~ 452 (465)
T d1xfda1 391 ANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLET 452 (465)
T ss_dssp ECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEEC
T ss_pred EECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEcC
Confidence 34433322221 2334456799999999999865443 5678888888888887753
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.16 E-value=0.00055 Score=81.92 Aligned_cols=236 Identities=8% Similarity=0.036 Sum_probs=149.8
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCC----CcEEEEeCCCccee
Q psy4869 1084 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD----GRVKQWDADNFERI 1159 (2435)
Q Consensus 1084 ~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~D----g~V~iwD~~~~~~~ 1159 (2435)
.+-.++|.++|++.++-..++.|..|+.+.++....+.........++|.++++++++...+ +.+...+.......
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~ 120 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 120 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence 45688999999977777788999999988777666665666678999999999877765432 34555555544332
Q ss_pred EEEEEEEeecccccCeEEEEEeCCCCEEEEEeC------CCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEE-
Q psy4869 1160 VTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG------DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT- 1232 (2435)
Q Consensus 1160 ~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~------Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsg- 1232 (2435)
.... ........+.+++.++|++.++... .+.+..++...+. +..+...-..-+.|+|+|+++.|+.+
T Consensus 121 ~~~~----~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad 195 (319)
T d2dg1a1 121 DIIE----DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTE 195 (319)
T ss_dssp EEEC----SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred eecc----CCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEec
Confidence 2221 1122345788999999986665322 1335555555333 33333334456789999998866555
Q ss_pred ECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccc
Q psy4869 1233 SKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK 1312 (2435)
Q Consensus 1233 s~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1312 (2435)
+..++|..||+........... ...... ..
T Consensus 196 ~~~~~I~~~d~~~~g~~~~~~~-------------------~~~~~~-------------------------------~~ 225 (319)
T d2dg1a1 196 TTANRLHRIALEDDGVTIQPFG-------------------ATIPYY-------------------------------FT 225 (319)
T ss_dssp GGGTEEEEEEECTTSSSEEEEE-------------------EEEEEE-------------------------------CC
T ss_pred ccCCceEEEEEcCCCceecccc-------------------ceeeec-------------------------------cC
Confidence 4567777777653211110000 000000 00
Q ss_pred ccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC------CCCCeEEEEEecCCCEEEEEe
Q psy4869 1313 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG------HKLPVLSLDMSYDSTLIATGS 1375 (2435)
Q Consensus 1313 ~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~------h~~~V~~la~spdg~~L~sGg 1375 (2435)
......-+++..+|+++++....|+|.+|+. .++.+..+.. +...+.+++|.+++..++...
T Consensus 226 ~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 226 GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 0122456899999999988889999999995 6888777753 334578999998877665544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.84 E-value=0.003 Score=74.26 Aligned_cols=223 Identities=9% Similarity=0.072 Sum_probs=143.4
Q ss_pred EEEEccCCCEEEEE-eCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-
Q psy4869 410 DLKFSTDGCHIFTC-STDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN- 487 (2435)
Q Consensus 410 ~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~- 487 (2435)
...|++....|+-. -..+.|..||.++++.. .+. ....+.++.+.+++ .++++ +.+ .+.++|..+++......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg-~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCC-CEEEE-EeC-ccEEeecccceeeEEeee
Confidence 34576644444433 35678888998877543 232 23345667777776 34433 444 58899998887554332
Q ss_pred ----CcccEEEEEECCCCCEEEEEec----CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEE-EEECCCcEEEE
Q psy4869 488 ----NTYQVTSVAFNDTAECVLTGGI----DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYIL-SNAMDNTVRIW 558 (2435)
Q Consensus 488 ----~~~~v~sv~~sp~g~~l~sgs~----dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~la-s~s~Dg~I~lW 558 (2435)
....++.+.+.|+|++.++... .+.-.+|.+..++....+.. -..-+.+.|+++++.++ +-+..+.|..|
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEe
Confidence 2346899999999997665432 23456677767765544443 33568899999998765 45568889999
Q ss_pred EcCCCCC--CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEc-CCC
Q psy4869 559 DIRPYVP--GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH-PKE 635 (2435)
Q Consensus 559 dl~~~~~--~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fs-pd~ 635 (2435)
++..... ..+........ ......-.+++..+|++.++.-..+.|..||. .|+++..+.-....+++++|- +|.
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~--~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDST--GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDA 252 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECT--TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTS
T ss_pred eecccccccccceEEEeccC--cccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCC
Confidence 8753211 11111111111 11234677889999998888777889999995 688888887666779999996 676
Q ss_pred CEEEEE
Q psy4869 636 PIIMSA 641 (2435)
Q Consensus 636 ~~Lasg 641 (2435)
+.|+..
T Consensus 253 ~~LyvT 258 (295)
T d2ghsa1 253 SRLLVT 258 (295)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 655443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.53 E-value=0.021 Score=66.77 Aligned_cols=192 Identities=15% Similarity=0.050 Sum_probs=129.1
Q ss_pred ccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec----CCcCEEEEEEcCCCCEEEEEEC----CCcEEEE
Q psy4869 1038 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG----HKLPVLSLDMSYDSTLIATGSG----DRTVKVW 1109 (2435)
Q Consensus 1038 ~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~----h~~~V~sl~~spdg~~L~Sgs~----Dg~I~vW 1109 (2435)
..+..+.++++.++|.++++ +.+ .+.++|..+++....... ....++++.+.++|++.++... .+.-.+|
T Consensus 56 ~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~ 133 (295)
T d2ghsa1 56 ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 133 (295)
T ss_dssp ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEe
Confidence 34567889999999877765 444 588999988875443321 1235889999999997776443 2345677
Q ss_pred EccCCceeEEEeccCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCccee--EEEEEEEeecccccCeEEEEEeCCCCE
Q psy4869 1110 GLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT-SKDGRVKQWDADNFERI--VTLHFFISLYGHKLPVLSLDMSYDSTL 1186 (2435)
Q Consensus 1110 d~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~-s~Dg~V~iwD~~~~~~~--~~~~~~~~~~~h~~~V~~l~~s~dg~~ 1186 (2435)
.+..++....... -..-+.++|+++++.++.. +..+.|..|++...... .............+....+++..+|++
T Consensus 134 ~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gnl 212 (295)
T d2ghsa1 134 HVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI 212 (295)
T ss_dssp EEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred eecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCE
Confidence 7777765544433 3356889999999866544 56788998887532111 111111122344556788999999988
Q ss_pred EEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEe-eCCCEEEEEE
Q psy4869 1187 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV-PKTHYFFTTS 1233 (2435)
Q Consensus 1187 l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~s-pd~~~lvsgs 1233 (2435)
.++.-..+.|..||. .|+.+..+.--...+++++|- ++.+.|++.+
T Consensus 213 Wva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 213 WNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred EeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence 777777889999996 488888886655679999996 4555555443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.39 E-value=0.0029 Score=73.09 Aligned_cols=96 Identities=10% Similarity=0.027 Sum_probs=67.7
Q ss_pred EEcCC--CCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC-CC-----cEEEEEccCCceeE
Q psy4869 1047 RVSPD--SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-DR-----TVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1047 ~~spd--g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~-Dg-----~I~vWd~~t~~~~~ 1118 (2435)
.++|| |+.++... +|.|.++++++++.. .+..+.+.+...+|||||+.||.... ++ .|.+++...++...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 99888765 677888999988764 56667778899999999998886532 22 37777777776543
Q ss_pred EEe------ccCCCEEEEEEccCCCEEEEEeC
Q psy4869 1119 SLL------AHEDSVTGVTFVPKTHYFFTTSK 1144 (2435)
Q Consensus 1119 ~l~------~h~~~V~~v~fsp~~~~l~s~s~ 1144 (2435)
... ..........|+|+++.|+....
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 114 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA 114 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEc
Confidence 221 12234567889999998887543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.37 E-value=0.0043 Score=71.62 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=63.6
Q ss_pred EecCC--CcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEe-CC-----CeEEEEEccCCceeecc
Q psy4869 892 AFSSD--NLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGT-KD-----GRLLIVDIGAGEILEDI 963 (2435)
Q Consensus 892 a~s~d--g~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~-~d-----g~V~vwd~~sg~~v~~~ 963 (2435)
..||| |+.+|....+.|.+.|+.+++..............+|||||++||-.. .+ ..|.+++..+|+...-.
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt 84 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT 84 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence 45688 888888888899999999988776666777888899999999998532 22 35888888888754322
Q ss_pred cc------cccceeEEEEecCC
Q psy4869 964 PA------HSQELWSVAMLPDQ 979 (2435)
Q Consensus 964 ~~------h~~~V~sv~~s~d~ 979 (2435)
.. .......++|+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~spdg 106 (281)
T d1k32a2 85 YFSGKSTGRRMFTDVAGFDPDG 106 (281)
T ss_dssp CCCEEEETTEECSEEEEECTTC
T ss_pred ecCCCccCccccccccccCCCC
Confidence 11 12245677888876
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.30 E-value=0.011 Score=76.01 Aligned_cols=313 Identities=11% Similarity=0.053 Sum_probs=175.8
Q ss_pred CCcEEEEec-CCcEEEEeCC-CCceeEEEeCCCe------------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceee
Q psy4869 896 DNLALVSAC-ASQVKIWNRP-SLSCLRTIDTGSY------------ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILE 961 (2435)
Q Consensus 896 dg~~la~g~-~~~V~Iwd~~-~~~~~~~l~~~~~------------v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~ 961 (2435)
+|...++.. .+.|.-.|.. +++.+.+++.... .+.+++. +..|++++.+|.|+..|.++|+++.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 555555544 5788888874 6998887752211 1234443 4567888999999999999999876
Q ss_pred cccccc----cceeEEEEecCCCCCCCcCCcceEEEEEeC------CCeEEEEEcccccccccccccccc----ccc---
Q psy4869 962 DIPAHS----QELWSVAMLPDQFNPNVYLPLQIQVVTGGG------DKSVKLWQLELVSVNREADEETKD----VSR--- 1024 (2435)
Q Consensus 962 ~~~~h~----~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~------Dg~V~lW~l~~~~~~~~~~~~~~~----~~~--- 1024 (2435)
...... ..+.+--... ...++.+.. +|.|+.+|+..++........... ...
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~-----------~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~ 208 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVA-----------KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFN 208 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-----------TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred cccccccccccceeecCeEe-----------CCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccccccc
Confidence 543211 0111110111 124555543 688999999887765542111000 000
Q ss_pred ---c--cce---eeeeecccccc-CCCE-EEEEEcCCCCEEEEEEC----------------CCcEEEEEcCCCeEEEEE
Q psy4869 1025 ---S--HKV---LSLLHTRTLKL-EEQV-LCARVSPDSKLLAVSLL----------------DTTVKIFFLDTFKFFISL 1078 (2435)
Q Consensus 1025 ---~--~~~---l~~~~~~~~~~-~~~v-~~l~~spdg~~Lavg~~----------------dg~V~i~d~~~~~~~~~l 1078 (2435)
. ... ........... .+.+ ...+++++..+++.+.. ...+...|.++++.+..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~ 288 (571)
T d2ad6a1 209 SANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGY 288 (571)
T ss_dssp TTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred ccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecc
Confidence 0 000 00000000000 1112 23577777777776654 245777899999988887
Q ss_pred ecCCcC---------EEEEEEcCCCC---EEEEEECCCcEEEEEccCCceeEEEeccC----------------------
Q psy4869 1079 YGHKLP---------VLSLDMSYDST---LIATGSGDRTVKVWGLDYGDCHKSLLAHE---------------------- 1124 (2435)
Q Consensus 1079 ~~h~~~---------V~sl~~spdg~---~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~---------------------- 1124 (2435)
+.+... ..-..+..+++ .++.++.+|.+.++|.++|+.+...+...
T Consensus 289 q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 368 (571)
T d2ad6a1 289 QKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFA 368 (571)
T ss_dssp ESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGC
T ss_pred cccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccc
Confidence 643221 11122223443 56778899999999999998775422100
Q ss_pred ---------------C--CEEEEEEccCCCEEEEEeCC-------------------------------------CcEEE
Q psy4869 1125 ---------------D--SVTGVTFVPKTHYFFTTSKD-------------------------------------GRVKQ 1150 (2435)
Q Consensus 1125 ---------------~--~V~~v~fsp~~~~l~s~s~D-------------------------------------g~V~i 1150 (2435)
. .-...+|+|+...++....+ |.|..
T Consensus 369 ~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~A 448 (571)
T d2ad6a1 369 TRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRA 448 (571)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEE
T ss_pred cccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEE
Confidence 0 00125666766666543322 45778
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCC-CEEEEEEeeCCCE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTGVTFVPKTHY 1228 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~-~V~~i~~spd~~~ 1228 (2435)
+|+.+++.+...... .....+.+ .-.+.++++|+.||.++.+|.++|+.+.++.-... .-.-+.|..++++
T Consensus 449 iD~~TG~~~W~~~~~--~~~~~g~l-----~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq 520 (571)
T d2ad6a1 449 FDLTTGKAKWTKWEK--FAAWGGTL-----YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp ECTTTCCEEEEEEES--SCCCSBCE-----EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred eccCCCceeeEcCCC--CCCCccee-----EecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence 888888877765411 01111121 22466888999999999999999999988753221 2222455556654
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.13 E-value=0.041 Score=70.67 Aligned_cols=314 Identities=14% Similarity=0.090 Sum_probs=178.9
Q ss_pred CCcEEEEec-CCcEEEEeC-CCCceeEEEeCCC------------eEEEEEEecCC----CEEEEEeCCCeEEEEEccCC
Q psy4869 896 DNLALVSAC-ASQVKIWNR-PSLSCLRTIDTGS------------YALSVCFVPGD----RHVLVGTKDGRLLIVDIGAG 957 (2435)
Q Consensus 896 dg~~la~g~-~~~V~Iwd~-~~~~~~~~l~~~~------------~v~~vafspdg----~~Lavg~~dg~V~vwd~~sg 957 (2435)
+|...+++. .+.|...|. ++++.+..++... ..+.+++.++. .+|+.++.|+.|+..|.++|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 455444443 467777786 5788888775321 12567776643 46888999999999999999
Q ss_pred ceeeccccccc----cee-EEEEecCCCCCCCcCCcceEEEEEeC------CCeEEEEEccccccccccccccccc----
Q psy4869 958 EILEDIPAHSQ----ELW-SVAMLPDQFNPNVYLPLQIQVVTGGG------DKSVKLWQLELVSVNREADEETKDV---- 1022 (2435)
Q Consensus 958 ~~v~~~~~h~~----~V~-sv~~s~d~~~~~~~~p~~~~l~sgs~------Dg~V~lW~l~~~~~~~~~~~~~~~~---- 1022 (2435)
+++..+..... .++ +..+. ...++.+.. .|.|+.+|+..+++.+.........
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~------------~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~ 209 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVV------------KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLL 209 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE------------TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTB
T ss_pred ceeccccccccccccccccCCcEE------------CCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccc
Confidence 98877632110 111 11111 235666643 4889999998887766432110000
Q ss_pred c--------cccce---eeee--eccccccCCCEEEEEEcCCCCEEEEEECC----------------CcEEEEEcCCCe
Q psy4869 1023 S--------RSHKV---LSLL--HTRTLKLEEQVLCARVSPDSKLLAVSLLD----------------TTVKIFFLDTFK 1073 (2435)
Q Consensus 1023 ~--------~~~~~---l~~~--~~~~~~~~~~v~~l~~spdg~~Lavg~~d----------------g~V~i~d~~~~~ 1073 (2435)
. ..... .... ......-...-..+++++...++..+..+ ..|...|.++++
T Consensus 210 ~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~ 289 (596)
T d1w6sa_ 210 ASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE 289 (596)
T ss_dssp CTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred ccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccc
Confidence 0 00000 0000 00000011122345677777777776432 347788999999
Q ss_pred EEEEEec--CC-------cCEEEEEE-cCCC---CEEEEEECCCcEEEEEccCCceeEEEeccC--C-------------
Q psy4869 1074 FFISLYG--HK-------LPVLSLDM-SYDS---TLIATGSGDRTVKVWGLDYGDCHKSLLAHE--D------------- 1125 (2435)
Q Consensus 1074 ~~~~l~~--h~-------~~V~sl~~-spdg---~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~--~------------- 1125 (2435)
.+-.++. |. ....-+.. ..+| +.++.+..+|.+.++|..+|+.+...+... .
T Consensus 290 ~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~ 369 (596)
T d1w6sa_ 290 AKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPV 369 (596)
T ss_dssp EEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEE
T ss_pred ccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccccccccccc
Confidence 8887763 21 11222221 2344 467788999999999999998775432100 0
Q ss_pred ------------------------CEEEEEEccCCCEEEEEeC-------------------------------------
Q psy4869 1126 ------------------------SVTGVTFVPKTHYFFTTSK------------------------------------- 1144 (2435)
Q Consensus 1126 ------------------------~V~~v~fsp~~~~l~s~s~------------------------------------- 1144 (2435)
.-...+++|+..+++....
T Consensus 370 ~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~ 449 (596)
T d1w6sa_ 370 RDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNY 449 (596)
T ss_dssp ECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTT
T ss_pred cCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccC
Confidence 0012355555555443321
Q ss_pred --CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCC-CEEEEE
Q psy4869 1145 --DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTGVT 1221 (2435)
Q Consensus 1145 --Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~-~V~~i~ 1221 (2435)
-|.|.-||..+++...... +..++..-.+.-.+.+++.|+.||.++.+|.++|+.+..+.-... .-.-+.
T Consensus 450 ~~~G~l~A~D~~TG~~~W~~~-------~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~t 522 (596)
T d1w6sa_ 450 EGLGQIKAYNAITGDYKWEKM-------ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT 522 (596)
T ss_dssp BCCEEEEEECTTTCCEEEEEE-------ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred CCcceEEEEeCCCCceecccC-------CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeE
Confidence 1467888888888776553 111211111222577888999999999999999999988763221 112234
Q ss_pred EeeCCCE
Q psy4869 1222 FVPKTHY 1228 (2435)
Q Consensus 1222 ~spd~~~ 1228 (2435)
|..++++
T Consensus 523 Y~~dGkQ 529 (596)
T d1w6sa_ 523 YTHKGTQ 529 (596)
T ss_dssp EEETTEE
T ss_pred EEECCEE
Confidence 5556654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.06 E-value=0.035 Score=70.94 Aligned_cols=202 Identities=14% Similarity=0.023 Sum_probs=121.8
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCCc----------C-EEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE
Q psy4869 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL----------P-VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120 (2435)
Q Consensus 1052 g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~----------~-V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l 1120 (2435)
+..|++++.++.|.-+|..+++.+-.+..... . -..++. .+..++.+..|+.|.-.|..+|+.+...
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 34667777789999999999998887632110 0 011111 2456888899999999999999998877
Q ss_pred eccCC-CEEEEEEcc--CCCEEEEEeC------CCcEEEEeCCCcceeEEEEEEEeecc---------------------
Q psy4869 1121 LAHED-SVTGVTFVP--KTHYFFTTSK------DGRVKQWDADNFERIVTLHFFISLYG--------------------- 1170 (2435)
Q Consensus 1121 ~~h~~-~V~~v~fsp--~~~~l~s~s~------Dg~V~iwD~~~~~~~~~~~~~~~~~~--------------------- 1170 (2435)
..+.. .-..+.-.| ....++.+.. .|.|+-+|.++++.+..+........
T Consensus 144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 53221 000111111 1233444332 36799999999999988763211100
Q ss_pred ---cccCeE-EEEEeCCCCEEEEEeC-------------------CCcEEEEEccCCceeeEeeccCCCE---------E
Q psy4869 1171 ---HKLPVL-SLDMSYDSTLIATGSG-------------------DRTVKVWGLDYGDCHKSLLAHEDSV---------T 1218 (2435)
Q Consensus 1171 ---h~~~V~-~l~~s~dg~~l~sgs~-------------------Dg~V~iwd~~t~~~~~~~~~h~~~V---------~ 1218 (2435)
....++ .+++.+...+++.+.. ...|.-.|+++++.+..++.....+ .
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~ 303 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence 011121 2456666666665431 2457778999999776665322211 1
Q ss_pred EEEEeeCC---CEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1219 GVTFVPKT---HYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1219 ~i~~spd~---~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
-+....++ ..++.+..+|.+.++|..+.+.+......
T Consensus 304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~ 343 (560)
T d1kv9a2 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFG 343 (560)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred eeeeecCCceeeeeeecCccceEEEEecCCCccccccccc
Confidence 12222233 35667789999999999999988766543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.03 E-value=0.21 Score=56.72 Aligned_cols=240 Identities=8% Similarity=0.007 Sum_probs=149.0
Q ss_pred CeEEEEecCCcee----eEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCceEEEEeccCccccccCcccC
Q psy4869 384 RQIFIWSVYGECE----NIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR 458 (2435)
Q Consensus 384 g~I~iwd~~~~~~----~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~ 458 (2435)
+.|+-.++..... ....+..+...+..|+|+...++|+-. ..++.|+..+++.+.....+......+..+++...
T Consensus 10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~ 89 (263)
T d1npea_ 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL 89 (263)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence 4666666543211 112233334567889998877766655 45678999998766555455443345566776666
Q ss_pred CCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEecC---CeEEEEECCCCcEEEEEecCCCCE
Q psy4869 459 GQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGID---NDIKMWDLRTNSVVQKLRGHSDTV 534 (2435)
Q Consensus 459 ~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~d---g~V~lwD~~s~~~v~~l~~h~~~V 534 (2435)
+..+..+-...+.|.+.++.......... ....+..++++|...+++..... +.|.-.++............-...
T Consensus 90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P 169 (263)
T d1npea_ 90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLP 169 (263)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCE
T ss_pred CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccccc
Confidence 66777777788899999988665544333 33578899999988888765432 345555665443333333334567
Q ss_pred EEEEEcCCCCEEEEE-ECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC
Q psy4869 535 TGLSLSPDGSYILSN-AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR 613 (2435)
Q Consensus 535 ~~i~~spdg~~las~-s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~ 613 (2435)
.+|++.+.+++|+-+ ...+.|...|+.. ......+.+.. ....+++. ++.+..+-...+.|...|..++
T Consensus 170 ~glaiD~~~~~lYw~d~~~~~I~~~~~~g----~~~~~v~~~~~-----~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g 239 (263)
T d1npea_ 170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQ----PGRRKVLEGLQ-----YPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS 239 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTE----EEEEEEEECCC-----SEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred ceEEEeecCcEEEEEeCCCCEEEEEECCC----CCeEEEECCCC-----CcEEEEEE-CCEEEEEECCCCEEEEEECCCC
Confidence 899999888877655 4678899888862 22222333322 23456664 3444445456788999999998
Q ss_pred cEEEEec-CCCCCeeEEEEcC
Q psy4869 614 RIAYKLP-GHNGSVNDVQFHP 633 (2435)
Q Consensus 614 ~~~~~l~-~h~~~V~~l~fsp 633 (2435)
+.+..+. ........++..+
T Consensus 240 ~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 240 KEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EEEEEECCSSCCCCCCEEEEC
T ss_pred ccceEECCCCCCCcceEEEeC
Confidence 8776653 2334455555443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.00 E-value=0.053 Score=69.32 Aligned_cols=200 Identities=14% Similarity=0.022 Sum_probs=120.0
Q ss_pred CCEEEEEEC-CCcEEEEEc-CCCeEEEEEecC-C--c--------CEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE
Q psy4869 1052 SKLLAVSLL-DTTVKIFFL-DTFKFFISLYGH-K--L--------PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1052 g~~Lavg~~-dg~V~i~d~-~~~~~~~~l~~h-~--~--------~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~ 1118 (2435)
+..|++++. ++.|...|. ++++.+-++... . . .-..+++. +..++.++.||.|.-.|.++|+.+.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 344555553 578888887 468887776411 0 0 00123332 3567788999999999999999887
Q ss_pred EEeccC----CCEEEEEEccCCCEEEEEe------CCCcEEEEeCCCcceeEEEEEEEeec-------------------
Q psy4869 1119 SLLAHE----DSVTGVTFVPKTHYFFTTS------KDGRVKQWDADNFERIVTLHFFISLY------------------- 1169 (2435)
Q Consensus 1119 ~l~~h~----~~V~~v~fsp~~~~l~s~s------~Dg~V~iwD~~~~~~~~~~~~~~~~~------------------- 1169 (2435)
...... ..++.--...++ .++.+. .+|.|+.+|+.+++.+..........
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 218 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred cccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence 664211 111111111133 344444 36789999999999988765211000
Q ss_pred ------------ccccCe-EEEEEeCCCCEEEEEeC----------------CCcEEEEEccCCceeeEeeccCC-----
Q psy4869 1170 ------------GHKLPV-LSLDMSYDSTLIATGSG----------------DRTVKVWGLDYGDCHKSLLAHED----- 1215 (2435)
Q Consensus 1170 ------------~h~~~V-~~l~~s~dg~~l~sgs~----------------Dg~V~iwd~~t~~~~~~~~~h~~----- 1215 (2435)
.....+ ...++.++...++.+.. ...+...|.++|+.+..++.+..
T Consensus 219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~ 298 (571)
T d2ad6a1 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccc
Confidence 001112 23456666677766544 34678889999998877764322
Q ss_pred ----CEEEEEEeeCCC---EEEEEECCCcEEEEECCCCceEEEEee
Q psy4869 1216 ----SVTGVTFVPKTH---YFFTTSKDGRVKQWDADNFERIVTLHF 1254 (2435)
Q Consensus 1216 ----~V~~i~~spd~~---~lvsgs~Dg~I~vwD~~~~~~v~~~~~ 1254 (2435)
...-..+..+++ .++.++.+|.+.++|..+.+.+.....
T Consensus 299 D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~ 344 (571)
T d2ad6a1 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeecc
Confidence 112222223443 466778999999999999998866544
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.99 E-value=0.25 Score=55.46 Aligned_cols=254 Identities=12% Similarity=0.130 Sum_probs=155.0
Q ss_pred CeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEE
Q psy4869 384 RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLI 463 (2435)
Q Consensus 384 g~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~ll 463 (2435)
..|.|-|+.+.......-..- .+.-.+|..+.|+.-+ ...+.+||+++.+.++.+.-... |.-..|..+. .|
T Consensus 45 ~~VvIidl~n~~~~~Rrpi~A----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~-VvfWkWis~~--~L 116 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLN--TV 116 (327)
T ss_dssp EEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEESSSS--EE
T ss_pred ceEEEEECCCCCcceecccch----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC-cEEEEecCCC--EE
Confidence 467888886544333222211 2333457666666555 56899999999988887765543 4334454444 33
Q ss_pred EEEeCCCeEEEEeCCCCc-ceEeec-----CcccEEEEEECCCCCEEEEEe-------cCCeEEEEECCCCcEEEEEecC
Q psy4869 464 ASGSDDCTVKVWDPRKKN-QAVSMN-----NTYQVTSVAFNDTAECVLTGG-------IDNDIKMWDLRTNSVVQKLRGH 530 (2435)
Q Consensus 464 asgs~Dg~I~vwD~~~~~-~~~~~~-----~~~~v~sv~~sp~g~~l~sgs-------~dg~V~lwD~~s~~~v~~l~~h 530 (2435)
+-.. +..|.-|++.... +...+. ....|..-+.+++.++++..+ -.|.+.||..+.+ .-+.++||
T Consensus 117 ~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGh 194 (327)
T d1utca2 117 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 194 (327)
T ss_dssp EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS
T ss_pred EEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccce
Confidence 3332 4679999996432 333332 235688888899999877542 2467889998765 34566777
Q ss_pred CCCEEEEEEcCCC---CEEEEE---ECCCcEEEEEcCCCCCC-----CceEEEEeCcccccccCeEEEEEcCCCCEEEEe
Q psy4869 531 SDTVTGLSLSPDG---SYILSN---AMDNTVRIWDIRPYVPG-----ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG 599 (2435)
Q Consensus 531 ~~~V~~i~~spdg---~~las~---s~Dg~I~lWdl~~~~~~-----~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg 599 (2435)
.+.-..+.+.-+. +.++-+ ...++++|-++...... .+.+..+-... ...+-...+..++....+..-
T Consensus 195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe-a~~DFPvamqvs~kygiiyvi 273 (327)
T d1utca2 195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-AQNDFPVAMQISEKHDVVFLI 273 (327)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT-CTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc-ccCCcEEEEEeeccCCEEEEE
Confidence 6554444433221 122222 23468888888753211 11122222222 223455678888888899999
Q ss_pred cCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEE
Q psy4869 600 SADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIY 648 (2435)
Q Consensus 600 s~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~ 648 (2435)
..-|.|++||++++.++..-+-....|...+-+.+..-++....+|.|.
T Consensus 274 TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 274 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred ecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 9999999999999999987766666666555555544455555555443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.97 E-value=0.03 Score=71.53 Aligned_cols=316 Identities=16% Similarity=0.129 Sum_probs=176.3
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCC------------eEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGS------------YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI 963 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~------------~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~ 963 (2435)
+|+.+++..++.|.=.|.++++.+.+++... ....++.. +..|+.+..++.|+..|.++|+++..+
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee--CCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 5666666667888888999999998764211 11122222 456888899999999999999988766
Q ss_pred ccccc-ceeEEEEecCCCCCCCcCCcceEEEEEeC------CCeEEEEEcccccccccccccccccccc---------cc
Q psy4869 964 PAHSQ-ELWSVAMLPDQFNPNVYLPLQIQVVTGGG------DKSVKLWQLELVSVNREADEETKDVSRS---------HK 1027 (2435)
Q Consensus 964 ~~h~~-~V~sv~~s~d~~~~~~~~p~~~~l~sgs~------Dg~V~lW~l~~~~~~~~~~~~~~~~~~~---------~~ 1027 (2435)
..+.. ....+.-.|. -....++.+.. .|.|+.+|...++...........-... ..
T Consensus 144 ~~~~~~~~~~~~~~p~--------v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~ 215 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPR--------VVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK 215 (560)
T ss_dssp ECSCTTSSCBCCSCCE--------EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred CccCcccceeeeeeee--------eecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccc
Confidence 43221 0000000000 00123444332 2668888887776655432111000000 00
Q ss_pred eeeeeeccccccC-CCEEEEEEcCCCCEEEEEEC-------------------CCcEEEEEcCCCeEEEEEecCCcCE--
Q psy4869 1028 VLSLLHTRTLKLE-EQVLCARVSPDSKLLAVSLL-------------------DTTVKIFFLDTFKFFISLYGHKLPV-- 1085 (2435)
Q Consensus 1028 ~l~~~~~~~~~~~-~~v~~l~~spdg~~Lavg~~-------------------dg~V~i~d~~~~~~~~~l~~h~~~V-- 1085 (2435)
............. ..-..+++.+...+++.+.. ...|.-.|.++++....++.....+
T Consensus 216 ~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd 295 (560)
T d1kv9a2 216 TWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD 295 (560)
T ss_dssp TCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred cccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecccccccc
Confidence 0000000000001 11223567777777776532 2357777888998877765422221
Q ss_pred -------EEEEEcCCC---CEEEEEECCCcEEEEEccCCceeEEEeccC-C-----------------------------
Q psy4869 1086 -------LSLDMSYDS---TLIATGSGDRTVKVWGLDYGDCHKSLLAHE-D----------------------------- 1125 (2435)
Q Consensus 1086 -------~sl~~spdg---~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~-~----------------------------- 1125 (2435)
.-+....++ ..++.+..+|.+.++|..+|+.+...+.-. .
T Consensus 296 ~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p 375 (560)
T d1kv9a2 296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (560)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred ccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeee
Confidence 112222234 467778899999999999998876543110 0
Q ss_pred ------CEEEEEEccCCCEEEEEeC------------------------------------CCcEEEEeCCCcceeEEEE
Q psy4869 1126 ------SVTGVTFVPKTHYFFTTSK------------------------------------DGRVKQWDADNFERIVTLH 1163 (2435)
Q Consensus 1126 ------~V~~v~fsp~~~~l~s~s~------------------------------------Dg~V~iwD~~~~~~~~~~~ 1163 (2435)
.-...+++|+...++.... .|.|.-||+.+++.+....
T Consensus 376 ~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~ 455 (560)
T d1kv9a2 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP 455 (560)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeecc
Confidence 0114456666666654332 2468889999998887764
Q ss_pred EEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCC-EEEEEEeeCCCE
Q psy4869 1164 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS-VTGVTFVPKTHY 1228 (2435)
Q Consensus 1164 ~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~-V~~i~~spd~~~ 1228 (2435)
. ..+...-.+.-.+.+++.|+.||.++.+|.++|+.+..+.-.... -.-+.|..++++
T Consensus 456 ~-------~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq 514 (560)
T d1kv9a2 456 Y-------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (560)
T ss_dssp E-------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred C-------CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 2 111111112224678899999999999999999999887632221 112444456653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.97 E-value=0.023 Score=72.97 Aligned_cols=316 Identities=15% Similarity=0.130 Sum_probs=173.3
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCC------------eEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGS------------YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI 963 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~------------~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~ 963 (2435)
+|+.+++..++.|.=+|.++++.+..++... ..+.+.+. +..+++++.++.|+..|.++|+++...
T Consensus 77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecc
Confidence 6666666667889999999999998775221 11233333 346778889999999999999987554
Q ss_pred ccc--ccceeEEEEecCCCCCCCcCCcceEEEEEeC------CCeEEEEEcccccccccccccccccccc---------c
Q psy4869 964 PAH--SQELWSVAMLPDQFNPNVYLPLQIQVVTGGG------DKSVKLWQLELVSVNREADEETKDVSRS---------H 1026 (2435)
Q Consensus 964 ~~h--~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~------Dg~V~lW~l~~~~~~~~~~~~~~~~~~~---------~ 1026 (2435)
... ...-..+.-.|- -....++++.. .|.|+.+|...+++.............. .
T Consensus 155 ~~~~~~~~~~~~~~~p~--------v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~ 226 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPR--------VFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA 226 (573)
T ss_dssp ETTTTCCSSCBCCSCCE--------EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred cCccCCcceEEeecceE--------EEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccc
Confidence 321 111000000000 01134555433 4679999988877655432211000000 0
Q ss_pred ceeeee-eccccccCCCE-EEEEEcCCCCEEEEEEC-------------------CCcEEEEEcCCCeEEEEEecCC---
Q psy4869 1027 KVLSLL-HTRTLKLEEQV-LCARVSPDSKLLAVSLL-------------------DTTVKIFFLDTFKFFISLYGHK--- 1082 (2435)
Q Consensus 1027 ~~l~~~-~~~~~~~~~~v-~~l~~spdg~~Lavg~~-------------------dg~V~i~d~~~~~~~~~l~~h~--- 1082 (2435)
...... ........+.+ ...+++++..+++.+.. ...|...|.++++....++...
T Consensus 227 ~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~ 306 (573)
T d1kb0a2 227 RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN 306 (573)
T ss_dssp TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC
T ss_pred cccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccc
Confidence 000000 00000001111 23566777666665431 1246667778888776655321
Q ss_pred ------cCEEEEEEcCCC---CEEEEEECCCcEEEEEccCCceeEEEeccCC----------------------------
Q psy4869 1083 ------LPVLSLDMSYDS---TLIATGSGDRTVKVWGLDYGDCHKSLLAHED---------------------------- 1125 (2435)
Q Consensus 1083 ------~~V~sl~~spdg---~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~---------------------------- 1125 (2435)
.+........++ ..++.++.+|.+.++|..+|+.+........
T Consensus 307 wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (573)
T d1kb0a2 307 WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV 386 (573)
T ss_dssp SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred ccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEe
Confidence 111222222233 4677788999999999999998765432110
Q ss_pred -------CEEEEEEccCCCEEEEEeCC-------------------------------------------CcEEEEeCCC
Q psy4869 1126 -------SVTGVTFVPKTHYFFTTSKD-------------------------------------------GRVKQWDADN 1155 (2435)
Q Consensus 1126 -------~V~~v~fsp~~~~l~s~s~D-------------------------------------------g~V~iwD~~~ 1155 (2435)
.-...+++|+...++....+ |.|.-||+.+
T Consensus 387 pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~t 466 (573)
T d1kb0a2 387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA 466 (573)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred ecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCC
Confidence 01124667766655543222 3577788888
Q ss_pred cceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCE-EEEEEeeCCCE
Q psy4869 1156 FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV-TGVTFVPKTHY 1228 (2435)
Q Consensus 1156 ~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V-~~i~~spd~~~ 1228 (2435)
++.+...+. ..+...-.+.-.+.++++|+.||.++.+|.++|+.+..+.-..... .-+.|..++++
T Consensus 467 Gk~~W~~~~-------~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ 533 (573)
T d1kb0a2 467 QKAAWSVEH-------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ 533 (573)
T ss_dssp TEEEEEEEE-------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CceEeeecC-------CCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 877776541 1111111122357789999999999999999999998876322111 11445556754
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.94 E-value=0.083 Score=67.52 Aligned_cols=201 Identities=13% Similarity=0.012 Sum_probs=118.9
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEEecCC----------cCE-EEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe
Q psy4869 1053 KLLAVSLLDTTVKIFFLDTFKFFISLYGHK----------LPV-LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1121 (2435)
Q Consensus 1053 ~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~----------~~V-~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~ 1121 (2435)
..|++++.++.|.-+|.++++.+-.+.... ..+ ..+.+. ...++.+..|+.+.-.|.++|+.+....
T Consensus 78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence 456677778999999999999887764210 011 112221 3467778999999999999999887665
Q ss_pred cc--CCCEEEEEEcc--CCCEEEEEeC------CCcEEEEeCCCcceeEEEEEEEeecc---------------------
Q psy4869 1122 AH--EDSVTGVTFVP--KTHYFFTTSK------DGRVKQWDADNFERIVTLHFFISLYG--------------------- 1170 (2435)
Q Consensus 1122 ~h--~~~V~~v~fsp--~~~~l~s~s~------Dg~V~iwD~~~~~~~~~~~~~~~~~~--------------------- 1170 (2435)
.. ...-..+.-.| -+..++++.. .|.|+.+|.++++.+..+........
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~ 235 (573)
T d1kb0a2 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW 235 (573)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred CccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCce
Confidence 32 11100111111 1334555432 46799999999999988753211100
Q ss_pred ----cccCe-EEEEEeCCCCEEEEEeC-------------------CCcEEEEEccCCceeeEeeccCC---------CE
Q psy4869 1171 ----HKLPV-LSLDMSYDSTLIATGSG-------------------DRTVKVWGLDYGDCHKSLLAHED---------SV 1217 (2435)
Q Consensus 1171 ----h~~~V-~~l~~s~dg~~l~sgs~-------------------Dg~V~iwd~~t~~~~~~~~~h~~---------~V 1217 (2435)
....+ ...++.++...++.+.. ...|...|+++++....++.... +.
T Consensus 236 ~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~ 315 (573)
T d1kb0a2 236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPM 315 (573)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCC
T ss_pred eecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccccee
Confidence 01112 12455666666654331 12467778888887655543211 12
Q ss_pred EEEEEeeCC---CEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1218 TGVTFVPKT---HYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1218 ~~i~~spd~---~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
.......++ ..++.++.+|.+.++|..+++.+......
T Consensus 316 ~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~ 356 (573)
T d1kb0a2 316 ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFV 356 (573)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred eecceecCCCceeeeeeccccceeEEecccccccccccccc
Confidence 222222233 35677789999999999999988776543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.92 E-value=0.051 Score=69.72 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=70.1
Q ss_pred CCCEEEEEECCCcEEEEEc-cCCceeEEEeccCC-----------CEEEEEEccC----CCEEEEEeCCCcEEEEeCCCc
Q psy4869 1093 DSTLIATGSGDRTVKVWGL-DYGDCHKSLLAHED-----------SVTGVTFVPK----THYFFTTSKDGRVKQWDADNF 1156 (2435)
Q Consensus 1093 dg~~L~Sgs~Dg~I~vWd~-~t~~~~~~l~~h~~-----------~V~~v~fsp~----~~~l~s~s~Dg~V~iwD~~~~ 1156 (2435)
++.+.++++.++.|...|. ++|+.+.++..... .-+.+++.++ ...|+.++.|+.|.-.|.+++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 4444444455677888886 57888877642110 1134555442 346889999999999999999
Q ss_pred ceeEEEEEEEeecccc-cCeEE-EEEeCCCCEEEEEeC------CCcEEEEEccCCceeeEee
Q psy4869 1157 ERIVTLHFFISLYGHK-LPVLS-LDMSYDSTLIATGSG------DRTVKVWGLDYGDCHKSLL 1211 (2435)
Q Consensus 1157 ~~~~~~~~~~~~~~h~-~~V~~-l~~s~dg~~l~sgs~------Dg~V~iwd~~t~~~~~~~~ 1211 (2435)
+.+...... ..+. ..++. -.+ -+..+++|.. .|.|+-+|.++|+.+.++.
T Consensus 142 ~~~w~~~~~---d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 142 ETVWKVENS---DIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CEEEEEECC---CGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ceecccccc---ccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 988766411 0111 11111 011 1445666543 4889999999999887764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.76 E-value=0.092 Score=63.25 Aligned_cols=272 Identities=11% Similarity=0.061 Sum_probs=143.1
Q ss_pred EEECCCCCEEEEEeCCC-----------eEEEEecCCce-eeEEE-eeCCCCCeeEEEEccCCCEEEEEeCC-CeEEEEE
Q psy4869 368 SKYHPDGQYIASSGYDR-----------QIFIWSVYGEC-ENIGV-MSGHTGAVMDLKFSTDGCHIFTCSTD-QTLAVWD 433 (2435)
Q Consensus 368 l~fspdg~~Lasgs~Dg-----------~I~iwd~~~~~-~~~~~-l~~h~~~V~~l~~s~dg~~L~s~s~D-g~I~vwd 433 (2435)
.....+|+.++.|+.+. .+.+||...+. ..... ...|.......++.+|+.+++.|+.+ ..+.+||
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd 104 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 104 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence 33456788888887531 36789987532 11111 23344445567888999998888765 5899999
Q ss_pred CCCCceEEEEeccCc-cccccCcccCCCeEEEEEeCC------CeEEEEeCCCCcceEeec----------C-----ccc
Q psy4869 434 LEKGQRIKKMKGHST-FVNSCDPVRRGQLLIASGSDD------CTVKVWDPRKKNQAVSMN----------N-----TYQ 491 (2435)
Q Consensus 434 ~~tg~~v~~l~~h~~-~v~sv~~~~~~~~llasgs~D------g~I~vwD~~~~~~~~~~~----------~-----~~~ 491 (2435)
..+......-..... .-..+...+++. +++.|+.+ ..+.+||+.+..-...-. + ...
T Consensus 105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 183 (387)
T d1k3ia3 105 SSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN 183 (387)
T ss_dssp GGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC
T ss_pred CccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccc
Confidence 988765432221111 112233345554 44455432 358899988764322110 0 000
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEE--ec----CCCC--EEEEEE-cCCCCEEEEEECC--------Cc
Q psy4869 492 VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL--RG----HSDT--VTGLSL-SPDGSYILSNAMD--------NT 554 (2435)
Q Consensus 492 v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l--~~----h~~~--V~~i~~-spdg~~las~s~D--------g~ 554 (2435)
-..+..-++|+.++.+..++.+.++|..+....... .. +... -.++.+ ..+++.++.|+.. ..
T Consensus 184 ~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~ 263 (387)
T d1k3ia3 184 HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTN 263 (387)
T ss_dssp SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCC
T ss_pred eeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccce
Confidence 111223356777777877888888888877543321 11 1111 122223 3456677776632 13
Q ss_pred EEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC-----------eEEEEECCCCcEEEEecC--
Q psy4869 555 VRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK-----------CVYIWDTTTRRIAYKLPG-- 621 (2435)
Q Consensus 555 I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg-----------~V~iwd~~s~~~~~~l~~-- 621 (2435)
..+.++............. .. ......-......+||++++.|+.+. .+.+||..+.+-.. +..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~-~~-~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~-~~~~~ 340 (387)
T d1k3ia3 264 AHIITLGEPGTSPNTVFAS-NG-LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QNPNS 340 (387)
T ss_dssp EEEEECCSTTSCCEEEECT-TC-CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CCCCS
T ss_pred eecccccccccCCCceeec-cc-cccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEE-CCCCC
Confidence 3444443222111111111 10 01111223455567999999988531 47889988765322 211
Q ss_pred CCCCee-EEEEcCCCCEEEEEEC
Q psy4869 622 HNGSVN-DVQFHPKEPIIMSASS 643 (2435)
Q Consensus 622 h~~~V~-~l~fspd~~~Lasgs~ 643 (2435)
+...-. .....+|+++|+.|+.
T Consensus 341 ~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 341 IVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEEECCCCEEEEEeCC
Confidence 111112 2345799999999884
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.67 E-value=0.12 Score=62.17 Aligned_cols=160 Identities=10% Similarity=0.032 Sum_probs=94.1
Q ss_pred CEEEEEEcCCCCEEEEEECCC-----------cEEEEEccCCceeE--EEe-ccCCCEEEEEEccCCCEEEEEeCC-CcE
Q psy4869 1084 PVLSLDMSYDSTLIATGSGDR-----------TVKVWGLDYGDCHK--SLL-AHEDSVTGVTFVPKTHYFFTTSKD-GRV 1148 (2435)
Q Consensus 1084 ~V~sl~~spdg~~L~Sgs~Dg-----------~I~vWd~~t~~~~~--~l~-~h~~~V~~v~fsp~~~~l~s~s~D-g~V 1148 (2435)
++.......+|++++.|+.+. .+.+||..+++... ... .+.......++.+++++++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 333444455778887777531 26789998876432 222 233334566788899988888765 589
Q ss_pred EEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC------CcEEEEEccCCceeeEe---------ecc
Q psy4869 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD------RTVKVWGLDYGDCHKSL---------LAH 1213 (2435)
Q Consensus 1149 ~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D------g~V~iwd~~t~~~~~~~---------~~h 1213 (2435)
.+||..+..-.. .. .. .....-...+..+||+.++.|+.+ ..+.+||..+.+-...- ..+
T Consensus 101 ~~yd~~~~~w~~-~~---~~-~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 175 (387)
T d1k3ia3 101 SLYDSSSDSWIP-GP---DM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK 175 (387)
T ss_dssp EEEEGGGTEEEE-CC---CC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred eEecCccCcccc-cc---cc-cccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccc
Confidence 999988753221 11 11 112223456667789999988743 45899998876521110 001
Q ss_pred CC-----CEEEEEEeeCCCEEEEEECCCcEEEEECCCCce
Q psy4869 1214 ED-----SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1248 (2435)
Q Consensus 1214 ~~-----~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~ 1248 (2435)
.. .-..+...++++.++.++.++.+.++|......
T Consensus 176 ~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~ 215 (387)
T d1k3ia3 176 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV 215 (387)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred cceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence 00 111122335677777777777777777766543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.86 Score=51.38 Aligned_cols=234 Identities=9% Similarity=-0.003 Sum_probs=142.5
Q ss_pred CeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCc----eEEEEeccCccccccCcccC
Q psy4869 384 RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQ----RIKKMKGHSTFVNSCDPVRR 458 (2435)
Q Consensus 384 g~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~----~v~~l~~h~~~v~sv~~~~~ 458 (2435)
..|+..++.+... ..+......+..|+|+...++|+-.. .++.|+-.++.... ....+......+..+++-+.
T Consensus 10 ~~I~~~~l~~~~~--~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~ 87 (266)
T d1ijqa1 10 HEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (266)
T ss_dssp SSEEEEETTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEECCCCcc--eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeec
Confidence 3477777765332 22233455678899998777766554 45677777764321 11222223344556676666
Q ss_pred CCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEe--cCCeEEEEECCCCcEEEEEecCCCCEE
Q psy4869 459 GQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGG--IDNDIKMWDLRTNSVVQKLRGHSDTVT 535 (2435)
Q Consensus 459 ~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs--~dg~V~lwD~~s~~~v~~l~~h~~~V~ 535 (2435)
+..+..+-...+.|.+.++......... ........++++|...+|+... ..+.|.-.++............-....
T Consensus 88 ~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~ 167 (266)
T d1ijqa1 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167 (266)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred cceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceee
Confidence 7778888788889999999876654433 3446688999999777777654 345677777765544433343445678
Q ss_pred EEEEcCCCCEEEEE-ECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q psy4869 536 GLSLSPDGSYILSN-AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR 614 (2435)
Q Consensus 536 ~i~~spdg~~las~-s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~ 614 (2435)
+|++.+.++.|+-+ ...+.|...|+.. ............ ......+++. ++.+..+-..++.|...+..+++
T Consensus 168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG----~~~~~~~~~~~~--~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 168 GITLDLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEKR--LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS----CSCEEEEECTTT--TSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEeeccccEEEEecCCcCEEEEEECCC----CCEEEEEeCCCc--ccccEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence 99999988777655 5578888888863 222222222211 1134556665 33444444567888888888876
Q ss_pred EEEEecCCCCCe
Q psy4869 615 IAYKLPGHNGSV 626 (2435)
Q Consensus 615 ~~~~l~~h~~~V 626 (2435)
....+......+
T Consensus 241 ~~~~~~~~~~~p 252 (266)
T d1ijqa1 241 DVNLLAENLLSP 252 (266)
T ss_dssp CCEEEECSCSCC
T ss_pred ceEEEEcCCCCc
Confidence 666555443333
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.61 E-value=0.24 Score=63.21 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=69.2
Q ss_pred CCEEEEEECCCcEEEEEccCCceeEEEeccC--------CCE-EEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEE
Q psy4869 1094 STLIATGSGDRTVKVWGLDYGDCHKSLLAHE--------DSV-TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF 1164 (2435)
Q Consensus 1094 g~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~--------~~V-~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~ 1164 (2435)
+..|+.++.++.|.-.|.++|+.+.++.... ..+ ..+++. +..++.+..|+.+...|..+++.+.....
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeecc
Confidence 3467778889999999999999988864210 111 123332 45678889999999999999988765531
Q ss_pred EEeecc---cccCeEEEEEeC--CCCEEEEE-------eCCCcEEEEEccCCceeeEeec
Q psy4869 1165 FISLYG---HKLPVLSLDMSY--DSTLIATG-------SGDRTVKVWGLDYGDCHKSLLA 1212 (2435)
Q Consensus 1165 ~~~~~~---h~~~V~~l~~s~--dg~~l~sg-------s~Dg~V~iwd~~t~~~~~~~~~ 1212 (2435)
...... ...++ ...+ .+..++.. +..+.|+-+|.++|+.+..+..
T Consensus 146 ~~~~~~~~~~~~p~---~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~ 202 (582)
T d1flga_ 146 ADHGAGYTMTGAPT---IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF 202 (582)
T ss_dssp SCGGGTCBCCSCCE---EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES
T ss_pred cCCCccceeecCce---EecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEec
Confidence 100000 01111 1111 12333333 2356799999999998776643
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.56 E-value=0.79 Score=51.60 Aligned_cols=203 Identities=11% Similarity=-0.027 Sum_probs=130.4
Q ss_pred CCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEEccCCceeE
Q psy4869 1041 EQVLCARVSPDSKLLAVSLL-DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG-SGDRTVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~-dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sg-s~Dg~I~vWd~~t~~~~~ 1118 (2435)
..+.+++|+...+.|+.... ++.|+..+++.......+......+.+|++..-+..|+.+ ...+.|.+.+++......
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~ 115 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence 34678999998888888764 4778888887665555554444578899998766666655 456789999987554433
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCC-Cc--EEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe-CCC
Q psy4869 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKD-GR--VKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS-GDR 1194 (2435)
Q Consensus 1119 ~l~~h~~~V~~v~fsp~~~~l~s~s~D-g~--V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs-~Dg 1194 (2435)
.+.........++.+|...+++..... +. |..-++......... ...-.....|++.+.++.|+... ..+
T Consensus 116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~------~~~~~~P~glaiD~~~~~lYw~d~~~~ 189 (263)
T d1npea_ 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA------QDNLGLPNGLTFDAFSSQLCWVDAGTH 189 (263)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE------CTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee------eecccccceEEEeecCcEEEEEeCCCC
Confidence 333344678999999977777755443 23 444455433322211 12335668899998877776664 567
Q ss_pred cEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEE
Q psy4869 1195 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTL 1252 (2435)
Q Consensus 1195 ~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~ 1252 (2435)
.|...|+........+.+.. .-.+|++. +..|.... ..+.|...|....+.+..+
T Consensus 190 ~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 190 RAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEE
Confidence 89999997554333333323 23567765 44455444 5678888888777655443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.95 Score=51.01 Aligned_cols=173 Identities=12% Similarity=-0.115 Sum_probs=109.7
Q ss_pred CEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC--CCcEEEEEccCCceeE
Q psy4869 1042 QVLCARVSPDSKLLAVSLL-DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG--DRTVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~-dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~--Dg~I~vWd~~t~~~~~ 1118 (2435)
.+..+++.+.+..|..... .+.|.+++++.......+.........|++.|...+|..... .+.|...+++......
T Consensus 78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~ 157 (266)
T d1ijqa1 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (266)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec
Confidence 3456788887777777754 477899998877666666666667889999986666655443 3456666665443333
Q ss_pred EEeccCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEE-eCCCcE
Q psy4869 1119 SLLAHEDSVTGVTFVPKTHYFFTT-SKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG-SGDRTV 1196 (2435)
Q Consensus 1119 ~l~~h~~~V~~v~fsp~~~~l~s~-s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg-s~Dg~V 1196 (2435)
.....-....++++.+.++.|+.+ ...+.|...++.......... ..........+++. +..|+.. ..++.|
T Consensus 158 l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~----~~~~~~~p~~lav~--~~~ly~td~~~~~I 231 (266)
T d1ijqa1 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE----DEKRLAHPFSLAVF--EDKVFWTDIINEAI 231 (266)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE----CTTTTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred ccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEe----CCCcccccEEEEEE--CCEEEEEECCCCeE
Confidence 333344567899999877777666 456788888986544332221 12223345677776 3455554 466788
Q ss_pred EEEEccCCceeeEeeccCCCEEEE
Q psy4869 1197 KVWGLDYGDCHKSLLAHEDSVTGV 1220 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~~~h~~~V~~i 1220 (2435)
...+..+++....+......+..|
T Consensus 232 ~~~~~~~g~~~~~~~~~~~~p~~i 255 (266)
T d1ijqa1 232 FSANRLTGSDVNLLAENLLSPEDM 255 (266)
T ss_dssp EEEETTTCCCCEEEECSCSCCCCE
T ss_pred EEEECCCCcceEEEEcCCCCceEE
Confidence 888888877666555443333333
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.55 E-value=0.85 Score=57.80 Aligned_cols=339 Identities=14% Similarity=0.023 Sum_probs=178.1
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCC--------cCE-EEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec
Q psy4869 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHK--------LPV-LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1122 (2435)
Q Consensus 1052 g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~--------~~V-~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~ 1122 (2435)
+..|++++.++.|.-+|..+++.+-++.... ..+ ..+++ .+..++.++.|+.+.-.|.++|+.+.....
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEecccccceeeeecc
Confidence 4467777888999999999999887764210 000 11222 245677899999999999999998765432
Q ss_pred --cCC----CEEEEEEcc--CCCEEEEE-------eCCCcEEEEeCCCcceeEEEEEEEe-----------ec-------
Q psy4869 1123 --HED----SVTGVTFVP--KTHYFFTT-------SKDGRVKQWDADNFERIVTLHFFIS-----------LY------- 1169 (2435)
Q Consensus 1123 --h~~----~V~~v~fsp--~~~~l~s~-------s~Dg~V~iwD~~~~~~~~~~~~~~~-----------~~------- 1169 (2435)
+.. .-.-+.+.+ ....++.. ...+.|.-+|.++++.+........ ..
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 110 000011111 12333332 2346799999999998887652110 00
Q ss_pred ----------------ccccCe-EEEEEeCCCCEEEEEeC------------------------CCcEEEEEccCCceee
Q psy4869 1170 ----------------GHKLPV-LSLDMSYDSTLIATGSG------------------------DRTVKVWGLDYGDCHK 1208 (2435)
Q Consensus 1170 ----------------~h~~~V-~~l~~s~dg~~l~sgs~------------------------Dg~V~iwd~~t~~~~~ 1208 (2435)
.....+ ..+++.+...+++.+.. ...|.-.|.++++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 001112 23667777777776541 2357788999999776
Q ss_pred Eeec--cCC--------C-EEEEEEeeCC---CEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCe
Q psy4869 1209 SLLA--HED--------S-VTGVTFVPKT---HYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKS 1274 (2435)
Q Consensus 1209 ~~~~--h~~--------~-V~~i~~spd~---~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~ 1274 (2435)
.++. |.- + +..+... ++ ..++..+.++.+.++|..+.+.+........... ........
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~-~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~------~~~~d~~~ 378 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW------ASHIDLKT 378 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS------EEEECTTT
T ss_pred cccccccccccccccccccccccccc-cccccceeEeecccccEEeecccCCcccccccccCcccc------cccccccc
Confidence 6653 221 1 1112221 22 2466677899999999999887765543322110 00000000
Q ss_pred EEEEEcccccc-ccc---ccccccccccccceeeeeecccccccccEEEEEecCCcceeEEe------------------
Q psy4869 1275 VKLWQLELVSV-NRE---ADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVS------------------ 1332 (2435)
Q Consensus 1275 v~iwdl~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavg------------------ 1332 (2435)
.+...-..... ... .........+. ..-......++++|+...+.+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~-----------~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g 447 (582)
T d1flga_ 379 GRPVEREGQRPPLPEPGQKHGKAVEVSPP-----------FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKG 447 (582)
T ss_dssp CCEEECTTCSCCCCCTTCSSCCCEEESSC-----------TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTT
T ss_pred ccceeccccccccccccccccceEEECCC-----------ccCCcccccceecCCCCceeeecccccccccccccccccc
Confidence 00000000000 000 00000000000 0000000111222222222111
Q ss_pred ---------------ecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecc-
Q psy4869 1333 ---------------LLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA- 1396 (2435)
Q Consensus 1333 ---------------s~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~- 1396 (2435)
...|.+.-+|+.+++.+-.+..+. ++..=.++..|.+|++|+.||.++-+|.++|+.+-+.+-
T Consensus 448 ~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~ 526 (582)
T d1flga_ 448 SAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp SCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccccccCccccccccCCCCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence 224778889999998877776433 222112345778888999999999999999999977652
Q ss_pred ---cccceEEEEEeeCCC-EEE
Q psy4869 1397 ---HEDSVTGVTFVPKTH-YFF 1414 (2435)
Q Consensus 1397 ---h~~~V~~laf~P~~~-~la 1414 (2435)
+..| +.|..+|+ +++
T Consensus 527 ~~~~~~P---~ty~~~G~qYv~ 545 (582)
T d1flga_ 527 SGIVSPP---ITWEQDGEQYLG 545 (582)
T ss_dssp SCCCSCC---EEEEETTEEEEE
T ss_pred CCccccC---EEEEECCEEEEE
Confidence 2234 45566773 443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.34 E-value=0.014 Score=69.34 Aligned_cols=221 Identities=15% Similarity=0.151 Sum_probs=133.4
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCceEEEEecc-CccccccCc--ccCCCeEEEEEeCC------------------CeEE
Q psy4869 416 DGCHIFTCS-TDQTLAVWDLEKGQRIKKMKGH-STFVNSCDP--VRRGQLLIASGSDD------------------CTVK 473 (2435)
Q Consensus 416 dg~~L~s~s-~Dg~I~vwd~~tg~~v~~l~~h-~~~v~sv~~--~~~~~~llasgs~D------------------g~I~ 473 (2435)
||++|+... .+..|-+-|+++.+....+.-. ...+..+.. .++. .+++.++.+ +.+.
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T-~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCe-EEEEccCccccccCCCCccccchhhcceEEE
Confidence 677777765 4677888888887765544321 111222222 2232 234343331 3467
Q ss_pred EEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC--------------------------------------CeEEE
Q psy4869 474 VWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID--------------------------------------NDIKM 515 (2435)
Q Consensus 474 vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d--------------------------------------g~V~l 515 (2435)
++|..+.+...+.........+.++++|+++++.+.+ +.+.+
T Consensus 177 ~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V 256 (459)
T d1fwxa2 177 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 256 (459)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence 8899988888888766677889999999999987643 22344
Q ss_pred EECCCC---cEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCC------C-CceEEEEeCcccccccCe
Q psy4869 516 WDLRTN---SVVQKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVP------G-ERCVKVMSGHQHNFEKNL 584 (2435)
Q Consensus 516 wD~~s~---~~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~------~-~~~v~~~~~h~~~~~~~i 584 (2435)
.|.+.. ..++.+... ....++.++|||+++++++ .+.++-++|++.... . ..++..- ....-..
T Consensus 257 VD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e----~elglgP 331 (459)
T d1fwxa2 257 VDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE----PELGLGP 331 (459)
T ss_dssp EECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC----CBCCSCE
T ss_pred ecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee----cccCcCc
Confidence 454431 122222221 2245789999999998766 599999999973210 0 1111111 0112245
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCC----------CcEEEEecC-----CCCCeeEEEEcCCCCEEEEEE
Q psy4869 585 LRCAWSVSGLYVTAGSADKCVYIWDTTT----------RRIAYKLPG-----HNGSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 585 ~~v~~spdg~~Lasgs~Dg~V~iwd~~s----------~~~~~~l~~-----h~~~V~~l~fspd~~~Lasgs 642 (2435)
+.-.|...|.-..+--.|..|--|++.. ...+..+.- |......-...|+|++|++..
T Consensus 332 Lht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 332 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred cccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence 7788998887667777899999999742 244444433 322222223468899998875
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.30 E-value=0.25 Score=58.40 Aligned_cols=195 Identities=13% Similarity=0.119 Sum_probs=123.2
Q ss_pred CCCeEEEEEeCCCeEEEEeCCCCcceE--eecCcccEEEEEEC--CCCCEEEEEecC------------------CeEEE
Q psy4869 458 RGQLLIASGSDDCTVKVWDPRKKNQAV--SMNNTYQVTSVAFN--DTAECVLTGGID------------------NDIKM 515 (2435)
Q Consensus 458 ~~~~llasgs~Dg~I~vwD~~~~~~~~--~~~~~~~v~sv~~s--p~g~~l~sgs~d------------------g~V~l 515 (2435)
+|+++++.-..+.+|.+.|++..+... .+.....+..++.. |+-.|++.++.+ +.+..
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 466778888889999999999988755 44556667777765 456677776653 23678
Q ss_pred EECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCC---------------cEEEEEcCCCC--------CCCceEEE
Q psy4869 516 WDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN---------------TVRIWDIRPYV--------PGERCVKV 572 (2435)
Q Consensus 516 wD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg---------------~I~lWdl~~~~--------~~~~~v~~ 572 (2435)
+|..+.+....+... +....+++++||+++++.+.+. .+.++++.... ....-+..
T Consensus 178 ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V 256 (459)
T d1fwxa2 178 VDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 256 (459)
T ss_dssp EETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence 999999887776532 3456789999999999887542 13334431000 00000111
Q ss_pred EeCcc---------cccccCeEEEEEcCCCCEEEEec-CCCeEEEEECCCCc-----------EEEEecCCCCCeeEEEE
Q psy4869 573 MSGHQ---------HNFEKNLLRCAWSVSGLYVTAGS-ADKCVYIWDTTTRR-----------IAYKLPGHNGSVNDVQF 631 (2435)
Q Consensus 573 ~~~h~---------~~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iwd~~s~~-----------~~~~l~~h~~~V~~l~f 631 (2435)
..+.. ....+....+..+|||+|+++++ .+.++.|+|++... .+..-....-..---+|
T Consensus 257 VD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f 336 (459)
T d1fwxa2 257 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF 336 (459)
T ss_dssp EECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred ecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence 11110 00112335689999999987765 68999999986321 11111223334455688
Q ss_pred cCCCCEEEEEECCCcEEEecCC
Q psy4869 632 HPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 632 spd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
..+|....|---|..|.-|+++
T Consensus 337 d~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 337 DGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CTTSEEEEEETTTTEEEEEEHH
T ss_pred CCCceEEEEeeccceEEEEecc
Confidence 8887655555589999999986
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.80 E-value=2.1 Score=47.83 Aligned_cols=259 Identities=11% Similarity=0.104 Sum_probs=151.7
Q ss_pred CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCC
Q psy4869 1104 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD 1183 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~d 1183 (2435)
..|.|.|+.....+.+... .-.+.-.+|..+.|+.-+ ...+.+||+++.+++.... ...+|.--.|-.+
T Consensus 45 ~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-------~~e~VvfWkWis~ 113 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-------MTDDVTFWKWISL 113 (327)
T ss_dssp EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-------CSSCCCEEEESSS
T ss_pred ceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-------cCCCcEEEEecCC
Confidence 4678888876553322221 122445678888777665 5689999999988777654 3446655666643
Q ss_pred CCEEEEEeCCCcEEEEEccCC-ceeeEeeccCC----CEEEEEEeeCCCEEEEEEC---CCcEEEEECCCCceEEEEeeC
Q psy4869 1184 STLIATGSGDRTVKVWGLDYG-DCHKSLLAHED----SVTGVTFVPKTHYFFTTSK---DGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1184 g~~l~sgs~Dg~V~iwd~~t~-~~~~~~~~h~~----~V~~i~~spd~~~lvsgs~---Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
+.|+..+ +..|+-|+++.. .+.+.+..|.. .|..-+.+++.++++..|- ++.|
T Consensus 114 -~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i----------------- 174 (327)
T d1utca2 114 -NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRV----------------- 174 (327)
T ss_dssp -SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEE-----------------
T ss_pred -CEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCce-----------------
Confidence 4554443 467999999643 35666665543 5667777778888776551 1110
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD 1335 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d 1335 (2435)
.|.+.+|..+... .+.....-.....+.......+..+.|++.- +...
T Consensus 175 ----------------~G~mQLYS~er~~--------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r--------~~~~ 222 (327)
T d1utca2 175 ----------------VGAMQLYSVDRKV--------SQPIEGHAASFAQFKMEGNAEESTLFCFAVR--------GQAG 222 (327)
T ss_dssp ----------------EEEEEEEETTTTE--------EEEECCSEEEEEEECCTTCSSCEEEEEEEEE--------ETTE
T ss_pred ----------------eEEEEEEEeccCc--------CccccceeeeeEEEEcCCCCCCceEEEEEEC--------CCCC
Confidence 1334444433110 0000000000000000111112223333321 2234
Q ss_pred CeEEEEEcccc---------eEEEEecCC---CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEE
Q psy4869 1336 TTVKIFFLDTF---------KFFISLYGH---KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1403 (2435)
Q Consensus 1336 G~V~v~d~~~~---------k~i~~~~~h---~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~ 1403 (2435)
++++|.++... +.+..+... ..=...|..++....|+.-..-|.|++||++++.++...+-...+|-.
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~ 302 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 302 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEE
Confidence 78888888541 111111111 122567888999999999999999999999999999988877778887
Q ss_pred EEEeeCCCEEEEEeCCCcEEE
Q psy4869 1404 VTFVPKTHYFFTTSKDGRVKQ 1424 (2435)
Q Consensus 1404 laf~P~~~~laSgg~Dg~V~l 1424 (2435)
-+-+....-++....+|.|..
T Consensus 303 ~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 303 TAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEETTTTEEEEEETTSEEEE
T ss_pred eccCCCCceEEEECCCCeEEE
Confidence 777766667777788887754
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.40 E-value=1.1 Score=54.54 Aligned_cols=256 Identities=14% Similarity=0.110 Sum_probs=130.0
Q ss_pred cCCCCceEEEEecCCCcEEEEecC------CcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeC----------
Q psy4869 882 QGHHSEVRALAFSSDNLALVSACA------SQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTK---------- 945 (2435)
Q Consensus 882 ~GH~~~V~~la~s~dg~~la~g~~------~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~---------- 945 (2435)
.++.-.+..+++||||+++|.+.+ -.++|+|+.+++.+...-.......++|++|++.|+-...
T Consensus 121 ~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred ccccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCccccc
Confidence 355556677889999999998653 4899999999988742221111135789999998875332
Q ss_pred ------CCeEEEEEccCCc----eeecccccccceeEEEEecCCCCCCCcCCcceEEEEEe--CCCeEEEEEcccccccc
Q psy4869 946 ------DGRLLIVDIGAGE----ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGG--GDKSVKLWQLELVSVNR 1013 (2435)
Q Consensus 946 ------dg~V~vwd~~sg~----~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs--~Dg~V~lW~l~~~~~~~ 1013 (2435)
..+|..+.+.++. ++.........+..+..+.++ . -.++... .++...+|-++......
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~----~-----~l~i~~~~~~~~~~~~~~~d~~~~~~ 271 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG----R-----YVLLSIREGCDPVNRLWYCDLQQESN 271 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS----C-----EEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCc----c-----eeeEEeeccCCccEEEEEeeCCCccc
Confidence 2367777776654 233222222234455566664 1 1233222 24455555543211000
Q ss_pred cccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCe---EEEEEecCCcCEEE
Q psy4869 1014 EADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL---DTTVKIFFLDTFK---FFISLYGHKLPVLS 1087 (2435)
Q Consensus 1014 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~---dg~V~i~d~~~~~---~~~~l~~h~~~V~s 1087 (2435)
.+......... ......... ...+.++.+++.... ++.|...++.... ....+..+...+..
T Consensus 272 -------~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~ 339 (430)
T d1qfma1 272 -------GITGILKWVKL----IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (430)
T ss_dssp -------SSCSSCCCEEE----ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEE
T ss_pred -------ccccccceeEe----ecccccceE-EEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceee
Confidence 00000000000 001111222 222222333333332 3556666654321 12233345555554
Q ss_pred EEEcCCCCEEEEEE-CCC--cEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEE--eC--CCcEEEEeCCCcce
Q psy4869 1088 LDMSYDSTLIATGS-GDR--TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT--SK--DGRVKQWDADNFER 1158 (2435)
Q Consensus 1088 l~~spdg~~L~Sgs-~Dg--~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~--s~--Dg~V~iwD~~~~~~ 1158 (2435)
-.+...+.+|+... .++ .|+++++..++...........|..+...++...+... +. -..+..||+.+++.
T Consensus 340 ~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 340 WVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred eEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 44444455665544 444 47889998887665554444556655555555444332 21 25688888877653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.81 E-value=4.3 Score=48.78 Aligned_cols=103 Identities=13% Similarity=0.057 Sum_probs=62.2
Q ss_pred EEEEEEcCCCCEEEEE-ECC----CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCC--------------
Q psy4869 1085 VLSLDMSYDSTLIATG-SGD----RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD-------------- 1145 (2435)
Q Consensus 1085 V~sl~~spdg~~L~Sg-s~D----g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~D-------------- 1145 (2435)
+..++++||+++++.+ +.+ ..|+++|+.+++.+..... ......++|.+++..|+-...+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence 3345678999887743 223 3699999999987643221 1122568899999877654432
Q ss_pred --CcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEE
Q psy4869 1146 --GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG 1190 (2435)
Q Consensus 1146 --g~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 1190 (2435)
..|.++.+.+......+- .........+..+..+.++++++..
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v--~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILC--AEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEE--ECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred CcceEEEEECCCCccccccc--cccccCCceEEeeeccCCcceeeEE
Confidence 257777777654332221 0111122346677788899887654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.87 E-value=9.3 Score=44.01 Aligned_cols=184 Identities=13% Similarity=0.170 Sum_probs=99.8
Q ss_pred EEEECCCCCEEEEEeC------------CCeEEEEecCCceeeEEEee--CC-----CCCeeEEEE--ccCCC-EEEEEe
Q psy4869 367 CSKYHPDGQYIASSGY------------DRQIFIWSVYGECENIGVMS--GH-----TGAVMDLKF--STDGC-HIFTCS 424 (2435)
Q Consensus 367 ~l~fspdg~~Lasgs~------------Dg~I~iwd~~~~~~~~~~l~--~h-----~~~V~~l~~--s~dg~-~L~s~s 424 (2435)
.+...|+|..+++++. .|.|.++|+.........+. +. .-....+.. ..||. +|++..
T Consensus 39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn 118 (340)
T d1v04a_ 39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN 118 (340)
T ss_dssp EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence 4666788876666542 48999999875433222221 11 112345544 34565 455553
Q ss_pred ---CCCeEEEEECCCCce----EEEEecc-CccccccCcccCCCeEEEEEe--C-------------CCeEEEEeCCCCc
Q psy4869 425 ---TDQTLAVWDLEKGQR----IKKMKGH-STFVNSCDPVRRGQLLIASGS--D-------------DCTVKVWDPRKKN 481 (2435)
Q Consensus 425 ---~Dg~I~vwd~~tg~~----v~~l~~h-~~~v~sv~~~~~~~~llasgs--~-------------Dg~I~vwD~~~~~ 481 (2435)
...+|.+|++..... +..+... ....+++.+..++. +++|-. . -....+|....++
T Consensus 119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~ 197 (340)
T d1v04a_ 119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 197 (340)
T ss_dssp CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence 346788888754332 1222221 23456677666663 444411 0 0122333333333
Q ss_pred ceEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEEE--ecCCCCEEEEEEcCCCCEEEEEEC
Q psy4869 482 QAVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRTNSVVQKL--RGHSDTVTGLSLSPDGSYILSNAM 551 (2435)
Q Consensus 482 ~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s~~~v~~l--~~h~~~V~~i~~spdg~~las~s~ 551 (2435)
.......-...+.++++|++++|+++. ..+.|++|++.....+... ..-.+..-.|.+.+++..++.++.
T Consensus 198 ~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 198 VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 270 (340)
T ss_dssp EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence 333334456789999999999887764 5788999998754322221 123345677888765444444443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.46 E-value=5.9 Score=45.80 Aligned_cols=200 Identities=14% Similarity=0.220 Sum_probs=119.3
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcC----C--CCEEEEEE-CC---CcEEEEEcc-CCceeEE
Q psy4869 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY----D--STLIATGS-GD---RTVKVWGLD-YGDCHKS 1119 (2435)
Q Consensus 1051 dg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~sp----d--g~~L~Sgs-~D---g~I~vWd~~-t~~~~~~ 1119 (2435)
+..+++....++-|.+||++ ++.+..+. .++++.|+.-. . ..-++.++ .+ ..|.+|.+. ....+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 44566666666679999986 66666654 34666666532 1 22344444 32 357888875 2333443
Q ss_pred Eec-------cCCCEEEEEE--ccC-CC-EEEEEeCCCcEEEEeCCCcce-eEEEEEEEeecccccCeEEEEEeCCCCEE
Q psy4869 1120 LLA-------HEDSVTGVTF--VPK-TH-YFFTTSKDGRVKQWDADNFER-IVTLHFFISLYGHKLPVLSLDMSYDSTLI 1187 (2435)
Q Consensus 1120 l~~-------h~~~V~~v~f--sp~-~~-~l~s~s~Dg~V~iwD~~~~~~-~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 1187 (2435)
+.. ....+..+|+ ++. +. ++++...+|.+..|.+..... .......+. ......+-.|.+......|
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~-f~~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRA-FKMNSQTEGMAADDEYGSL 194 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEE-EECSSCEEEEEEETTTTEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeec-cCCCCccceEEEeCCCCcE
Confidence 322 1234677777 453 44 566777889998887643221 111222222 2345678899999988999
Q ss_pred EEEeCCCcEEEEEccC--C---ceeeEee--ccCCCEEEEEEee--C-CCEEEEEE-CCCcEEEEECCCC-ceEEEEee
Q psy4869 1188 ATGSGDRTVKVWGLDY--G---DCHKSLL--AHEDSVTGVTFVP--K-THYFFTTS-KDGRVKQWDADNF-ERIVTLHF 1254 (2435)
Q Consensus 1188 ~sgs~Dg~V~iwd~~t--~---~~~~~~~--~h~~~V~~i~~sp--d-~~~lvsgs-~Dg~I~vwD~~~~-~~v~~~~~ 1254 (2435)
+.+-.+..|+.++.+- . ..+.... ...+.+-.|+... + ..+|++.+ .+.+..+||.... +.+..+.+
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i 273 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI 273 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence 9998877666666542 1 1222221 2456788888765 3 23666665 6888999999874 55555544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.12 E-value=9.8 Score=45.73 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=36.4
Q ss_pred CeEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee--eccc-----c-cccceeEEEEecC
Q psy4869 926 SYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEIL--EDIP-----A-HSQELWSVAMLPD 978 (2435)
Q Consensus 926 ~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v--~~~~-----~-h~~~V~sv~~s~d 978 (2435)
....+|+|.|||++|++-...|+|++++.++++.. ..+. . -......|+++|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 35668888888887766556789999888777632 2221 1 1246788999997
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.11 E-value=7.9 Score=45.18 Aligned_cols=181 Identities=11% Similarity=0.013 Sum_probs=105.7
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcC-----------CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy4869 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLD-----------TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1110 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~dg~V~i~d~~-----------~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd 1110 (2435)
..+-+++++...++++|+.++ ++|.... ......... -..|..++|+.+ .|+.. .++.+..++
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~ 111 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD 111 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence 455689999888999888665 6676532 111111111 125888999744 45544 455688888
Q ss_pred ccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEE
Q psy4869 1111 LDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG 1190 (2435)
Q Consensus 1111 ~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 1190 (2435)
...-........-...+..+.+.| ..++....++.+.++++.+........-...+ .-...+.+++|++.|.+++++
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~-~~~~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 112 LEELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSF-DVTNSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEE-EECSSEEEEEETTSCEEEEEE
T ss_pred eeccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceE-EecCCceEEEEeCCcEEEEEe
Confidence 766544444444556788888776 45667777899999999887643322111111 123568888888888888776
Q ss_pred eCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEE
Q psy4869 1191 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1191 s~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvs 1231 (2435)
..++.-.--++.....+.........|.+|.|..+..++++
T Consensus 189 ~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 189 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEE
Confidence 43321111122211111111123456889999876655554
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.16 E-value=23 Score=40.51 Aligned_cols=152 Identities=13% Similarity=0.223 Sum_probs=86.2
Q ss_pred eeEEEEccCCCEEEEEeC------------CCeEEEEECCCCce-EEEEeccCccccccCccc---------CCCeEEEE
Q psy4869 408 VMDLKFSTDGCHIFTCST------------DQTLAVWDLEKGQR-IKKMKGHSTFVNSCDPVR---------RGQLLIAS 465 (2435)
Q Consensus 408 V~~l~~s~dg~~L~s~s~------------Dg~I~vwd~~tg~~-v~~l~~h~~~v~sv~~~~---------~~~~llas 465 (2435)
.-+|+..+||..+++++. .|.|.++|+.+.+. ...+.-.........|.| ++...|+.
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 345666666665555432 48899999876532 222222222222223333 33334443
Q ss_pred Ee---CCCeEEEEeCCCCcceEe----e--cCcccEEEEEECCCCCEEEEEe-----------------cCCeEEEEECC
Q psy4869 466 GS---DDCTVKVWDPRKKNQAVS----M--NNTYQVTSVAFNDTAECVLTGG-----------------IDNDIKMWDLR 519 (2435)
Q Consensus 466 gs---~Dg~I~vwD~~~~~~~~~----~--~~~~~v~sv~~sp~g~~l~sgs-----------------~dg~V~lwD~~ 519 (2435)
.. ...+|.+|++........ + ......+.+++..+|.++++-. ..|.|.-||.
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~- 195 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 195 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC-
Confidence 32 345677777654332111 1 2334578999999998888731 1233444444
Q ss_pred CCcEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCC
Q psy4869 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRP 562 (2435)
Q Consensus 520 s~~~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~ 562 (2435)
++.. .+...-..-++|+++||+++|+.+. ..++|++|++..
T Consensus 196 -~~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~ 237 (340)
T d1v04a_ 196 -NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 237 (340)
T ss_dssp -SCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred -CceE-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence 3332 2222234679999999998877654 688999999874
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=88.80 E-value=6.7 Score=45.28 Aligned_cols=187 Identities=13% Similarity=0.276 Sum_probs=115.7
Q ss_pred CCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEcc----C--CCEEEEEeCC----CeEEEEECCC-CceE
Q psy4869 372 PDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST----D--GCHIFTCSTD----QTLAVWDLEK-GQRI 440 (2435)
Q Consensus 372 pdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~----d--g~~L~s~s~D----g~I~vwd~~t-g~~v 440 (2435)
|+..+++.....+-|.+||+.+... ..+ ..+.++.|..-. + ..-|+.++.. ..|.+|.+.. ...+
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~G~~l--~~~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLEGKML--HSY--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETTCCEE--EEC--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred cCccEEEEEcCcCCEEEEcCCCcEE--Eec--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 3456777777777899999976433 222 236666665442 2 2235555532 3688887752 3334
Q ss_pred EEEecc-------CccccccCc--ccC-CCeEEEEEeCCCeEEEEeCC---CC----cceEeecCcccEEEEEECCCCCE
Q psy4869 441 KKMKGH-------STFVNSCDP--VRR-GQLLIASGSDDCTVKVWDPR---KK----NQAVSMNNTYQVTSVAFNDTAEC 503 (2435)
Q Consensus 441 ~~l~~h-------~~~v~sv~~--~~~-~~~llasgs~Dg~I~vwD~~---~~----~~~~~~~~~~~v~sv~~sp~g~~ 503 (2435)
..+... ...+..+++ .+. +...++....+|.+..|.+. .+ ..+..+.....+..|.++...+.
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGS 193 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCc
Confidence 433321 123455555 343 44566777788998888763 22 23344567778999999999999
Q ss_pred EEEEecCCeEEEEECCC-----CcEEEEEec--CCCCEEEEEEcC--CCC-EEEE-EECCCcEEEEEcCC
Q psy4869 504 VLTGGIDNDIKMWDLRT-----NSVVQKLRG--HSDTVTGLSLSP--DGS-YILS-NAMDNTVRIWDIRP 562 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s-----~~~v~~l~~--h~~~V~~i~~sp--dg~-~las-~s~Dg~I~lWdl~~ 562 (2435)
|+.+-++..|+.++..- +..+....+ ..+.+-+|+.-. ++. +|++ .-.|.+..|||...
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence 99999998888887652 233333322 456788887653 333 5444 44689999999863
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.88 E-value=5.9 Score=46.27 Aligned_cols=180 Identities=13% Similarity=0.117 Sum_probs=101.1
Q ss_pred ceEEEEecCCCcEEEEecCCcEEEEeCCC-----------CceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q psy4869 887 EVRALAFSSDNLALVSACASQVKIWNRPS-----------LSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG 955 (2435)
Q Consensus 887 ~V~~la~s~dg~~la~g~~~~V~Iwd~~~-----------~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~ 955 (2435)
..+.||+++...++|+|....++|..++. ......+... .+..++|+-| .|++. .++.+.+++..
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip-~v~~vafs~d--~l~v~-~~~~l~~~~~~ 113 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIP-DVIFVCFHGD--QVLVS-TRNALYSLDLE 113 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECT-TEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCC-CeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence 34559999887788888887888887442 1222333333 5677888744 56654 45567778776
Q ss_pred CCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeecc
Q psy4869 956 AGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1035 (2435)
Q Consensus 956 sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1035 (2435)
.-........-..++..+.+.|. .++....+|.+.++.+..+.... + .. ...
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~p~------------~~~l~~~~~~~~~~~l~~~~~~~--------~------~~--~v~ 165 (381)
T d1xipa_ 114 ELSEFRTVTSFEKPVFQLKNVNN------------TLVILNSVNDLSALDLRTKSTKQ--------L------AQ--NVT 165 (381)
T ss_dssp STTCEEEEEECSSCEEEEEECSS------------EEEEEETTSEEEEEETTTCCEEE--------E------EE--SEE
T ss_pred ccccccccccccccccceecCCc------------eeEEEecCCCEEEEEeccCcccc--------c------cC--Ccc
Confidence 54333333333456777787765 46667778999999886433100 0 00 001
Q ss_pred ccccCCCEEEEEEcCCCCEEEEEECCCcEEEE-EcCCCeEEEEEecCCcCEEEEEEcCCCCEEEE
Q psy4869 1036 TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIF-FLDTFKFFISLYGHKLPVLSLDMSYDSTLIAT 1099 (2435)
Q Consensus 1036 ~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~-d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~S 1099 (2435)
.....+.+.|+.|++.|..++++..+ ...+. ++..-..+.........|.+|.|..+..++++
T Consensus 166 ~~~~~~~~~~v~ws~kgkq~v~~~g~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 166 SFDVTNSQLAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp EEEECSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred eEEecCCceEEEEeCCcEEEEEeCCC-ceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEE
Confidence 12234678888888888888877422 12211 11100000000113346889999866555553
|
| >d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZFY species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.60 E-value=0.14 Score=34.48 Aligned_cols=11 Identities=64% Similarity=1.458 Sum_probs=9.2
Q ss_pred EEeccccccCc
Q psy4869 1714 IQCQYCDFDSS 1724 (2435)
Q Consensus 1714 ~~~~~~~~~~~ 1724 (2435)
+|||||+|.+.
T Consensus 3 y~cqyc~yrsa 13 (30)
T d1klra_ 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccccccccccc
Confidence 69999999764
|
| >d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZFY species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.29 E-value=0.14 Score=34.48 Aligned_cols=11 Identities=64% Similarity=1.458 Sum_probs=9.2
Q ss_pred EeeccccccCc
Q psy4869 1825 IQCQYCDFDSS 1835 (2435)
Q Consensus 1825 ~~~~~~~~~~~ 1835 (2435)
+|||||+|.+.
T Consensus 3 y~cqyc~yrsa 13 (30)
T d1klra_ 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccccccccccc
Confidence 59999999764
|