Psyllid ID: psy558

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690--
FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFNQPHSPLSSVSSPASSNNPHSPYQSNGLPGKAQFNFEILSNFNYLVSTETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQVTYFELLTCLMPKMNPNFEEYPTTHIIKMNLYSSFSPPQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVTLFDILTHLKIYSFYFLPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFNQPHSPLSSVSSPASSNNPHSPYQSNGLPGEKCVKHKCLSQMLFPA
ccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccEEEEcccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEccEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHcccccEEEEEEccEEEEEEcccccEEEcccccccccccccccEEEccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEHHcEEEEEEEEEEEccccccccccccccccccHHHcccHHHHHHHHHHHccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccEEEEEccccccEEEcccccccEEEEEEEEEcccccccccccccHHcEcccccccccEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccEEccccEEccccEEEEEccccccccccEEEccccccccccHHHHHHHccccccEEEEEcccEEEEEEcccccEEEEcHHHHHHccccccccEEEccccEEEEEEHHHHHHHHHccccccHHHHHHHHHHHEEEEEEcccccccccccccHHHHHHHHcccccHHHHHHHHHEEEEccccccccccccHHHcccEEEEEEHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEcccHcccccccEcEEEEcccccccccEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
FTSPAVKKllgwkqgdeeEKWAEKAVDSLVKKLKKSKGDIEELEralscpgqpskcvtiprsldgrlqvshrkglphviycrvwrwpdlqshhelkplehcqfpfsakqkdvcinpyhykrvespvlppivvprhsefapghsllpyqqmaeptmphnisysnngfnqphsplssvsspassnnphspyqsnglpgkaqfNFEILSNFNylvstetpppaysppqdekhgsqsphsenamdtgissdvtpvpyqVTYFELLTClmpkmnpnfeeyptthiikmnlyssfsppqeqpfWASIAYYELNSRVGevfhcqshsvivdgftnpsnnlnrfclgqlsnvnrnstientrrhigKGVHLYYVGGEVYaeclsdsaifvqsrncnhhhgfhqstvckipagcslkiFNNQEFAELLSQSVNHGFEAVYELTKmctispifcirnkcnrteipfavkvprqFSLSVIILWYFVLISRMSFvkgwgaeyhrqdvtstpcwieihlhgplQWLDKVLIqmgsphqpissvshrkglphviycrvwrwpdlqshhelkplehcqfpfsakqkdvcinpyhykrvespvTLFDILTHLKIYsfyflpvlppivvprhsefapghsllpyqqmaeptmphnisysnngfnqphsplssvsspassnnphspyqsnglpgekcvkhkclsqmlfpa
ftspavkkllgwkqgdeeekwAEKAVDSLVKKLKKSKGDIEEleralscpgqpskcVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFNQPHSPLSSVSSPASSNNPHSPYQSNGLPGKAQFNFEILSNFNYLVSTETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQVTYFELLTCLMPKMNPNFEEYPTTHIIKMNLYSSFSPPQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQlsnvnrnstientrrhigkGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVTLFDILTHLKIYSFYFLPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFNQPHSPLSSVSSPASSNNPHSPYQSNGLPGEKCVKHKCLSQMLFPA
FTSPAVKKLLGWKQGDEEEKWAEkavdslvkklkkskGDIEELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFNQphsplssvsspassnnphspYQSNGLPGKAQFNFEILSNFNYLVSTETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQVTYFELLTCLMPKMNPNFEEYPTTHIIKMNLYSSFSPPQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVTLFDILTHLKIYSFYFLPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFNQphsplssvsspassnnphspYQSNGLPGEKCVKHKCLSQMLFPA
*******************************************************CVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVLPPIVVPRHS*F************************************************************QFNFEILSNFNYLV***********************************VTPVPYQVTYFELLTCLMPKMNPNFEEYPTTHIIKMNLYSSFSPPQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPH**ISSVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVTLFDILTHLKIYSFYFLPVLPPIVVPRHSEFAP************************************************************************
**SPAVKKLLGWKQ*****KWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVLPPIVV****************************************************************************************************************************YFELL******************************PQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNR*****************TRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCT*********************VPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMG************KGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVES***********************************************************************************************************
FTSPAVKKLLGWKQGDEEEKWAEKAVDSLV********************GQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFNQ**********************SNGLPGKAQFNFEILSNFNYLVSTETP**********************MDTGISSDVTPVPYQVTYFELLTCLMPKMNPNFEEYPTTHIIKMNLYSSFSPPQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVTLFDILTHLKIYSFYFLPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFNQ************************GLPGEKCVKHKCLSQMLFPA
FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVLPPIVVPRHSEFAPGHSLLPYQ***EPTMPHN*SY******************************************************T*****************************************************PNFEEYPTTHIIKMNLYSSFSPPQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVTLFDILTHL***SFYFLPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPH*******************************************************
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FTSPAVKKLLGWKQGDEEEKWAEKAxxxxxxxxxxxxxxxxxxxxxLSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFNQPHSPLSSVSSPASSNNPHSPYQSNGLPGKAQFNFEILSNFNYLVSTETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQVTYFELLTCLMPKMNPNFEEYPTTHIIKMNLYSSFSPPQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVTLFDILTHLKIYSFYFLPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFNQPHSPLSSVSSPASSNNPHSPYQSNGLPGEKCVKHKCLSQMLFPA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query692 2.2.26 [Sep-21-2011]
P42003455 Protein mothers against d yes N/A 0.621 0.945 0.677 0.0
Q9I962465 Mothers against decapenta N/A N/A 0.641 0.954 0.632 1e-180
Q1JQA2465 Mothers against decapenta yes N/A 0.640 0.952 0.633 1e-178
Q15797465 Mothers against decapenta yes N/A 0.640 0.952 0.633 1e-178
P70340465 Mothers against decapenta yes N/A 0.640 0.952 0.631 1e-177
P97588468 Mothers against decapenta yes N/A 0.643 0.950 0.628 1e-177
Q56I99465 Mothers against decapenta no N/A 0.654 0.974 0.625 1e-175
Q9I8V2472 Mothers against decapenta yes N/A 0.660 0.968 0.611 1e-173
P97454465 Mothers against decapenta no N/A 0.631 0.939 0.616 1e-172
Q9R1V3465 Mothers against decapenta no N/A 0.621 0.924 0.610 1e-172
>sp|P42003|MAD_DROME Protein mothers against dpp OS=Drosophila melanogaster GN=Mad PE=1 SV=1 Back     alignment and function desciption
 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/534 (67%), Positives = 384/534 (71%), Gaps = 104/534 (19%)

Query: 1   FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIP 60
           FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKK KG IEELERALSCPGQPSKCVTIP
Sbjct: 23  FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKRKGAIEELERALSCPGQPSKCVTIP 82

Query: 61  RSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYK 120
           RSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLE CQ+PFSAKQK+VCINPYHYK
Sbjct: 83  RSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYK 142

Query: 121 RVESPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFNQPHSPLS--SVSS 178
           RVESPVLPP++VPRHSEFAPGHS+L +  +AEP+MPHN+SYSN+GFN      S  SV S
Sbjct: 143 RVESPVLPPVLVPRHSEFAPGHSMLQFNHVAEPSMPHNVSYSNSGFNSHSLSTSNTSVGS 202

Query: 179 PASSN-NPHSPYQSNGLPGKAQFNFEILSNFNYLVSTETPPPAYSPPQDEKHGSQSPHSE 237
           P+S N NP+SPY S  L G                   TPPPAYSP +D    S +P+  
Sbjct: 203 PSSVNSNPNSPYDS--LAG-------------------TPPPAYSPSEDGN--SNNPNDG 239

Query: 238 NAMDTGISSDVTPVPYQVTYFELLTCLMPKMNPNFEEYPTTHIIKMNLYSSFSPPQEQPF 297
             +      DV  V Y                                        E  F
Sbjct: 240 GQLLDAQMGDVAQVSY---------------------------------------SEPAF 260

Query: 298 WASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHI 357
           WASIAYYELN RVGEVFHC ++SVIVDGFTNPSNN +R CLGQLSNVNRNSTIENTRRHI
Sbjct: 261 WASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHI 320

Query: 358 GKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAE 417
           GKGVHLYYV GEVYAECLSDSAIFVQSRNCN+HHGFH STVCKIP GCSLKIFNNQEFA+
Sbjct: 321 GKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTVCKIPPGCSLKIFNNQEFAQ 380

Query: 418 LLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYFVLI 477
           LLSQSVN+GFEAVYELTKMCTI                                      
Sbjct: 381 LLSQSVNNGFEAVYELTKMCTI-------------------------------------- 402

Query: 478 SRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVS 531
            RMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVL QMGSPH  ISSVS
Sbjct: 403 -RMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNAISSVS 455
Required for the function of decapentaplegic. May play an important role in mediating Dpp signaling. Involved in the BMP signaling pathway.
Drosophila melanogaster (taxid: 7227)
>sp|Q9I962|SMAD1_COTJA Mothers against decapentaplegic homolog 1 OS=Coturnix coturnix japonica GN=SMAD1 PE=2 SV=1 Back     alignment and function description
>sp|Q1JQA2|SMAD1_BOVIN Mothers against decapentaplegic homolog 1 OS=Bos taurus GN=SMAD1 PE=1 SV=1 Back     alignment and function description
>sp|Q15797|SMAD1_HUMAN Mothers against decapentaplegic homolog 1 OS=Homo sapiens GN=SMAD1 PE=1 SV=1 Back     alignment and function description
>sp|P70340|SMAD1_MOUSE Mothers against decapentaplegic homolog 1 OS=Mus musculus GN=Smad1 PE=1 SV=2 Back     alignment and function description
>sp|P97588|SMAD1_RAT Mothers against decapentaplegic homolog 1 OS=Rattus norvegicus GN=Smad1 PE=1 SV=1 Back     alignment and function description
>sp|Q56I99|SMAD5_CHICK Mothers against decapentaplegic homolog 5 OS=Gallus gallus GN=SMAD5 PE=2 SV=1 Back     alignment and function description
>sp|Q9I8V2|SMAD1_DANRE Mothers against decapentaplegic homolog 1 OS=Danio rerio GN=smad1 PE=2 SV=1 Back     alignment and function description
>sp|P97454|SMAD5_MOUSE Mothers against decapentaplegic homolog 5 OS=Mus musculus GN=Smad5 PE=1 SV=2 Back     alignment and function description
>sp|Q9R1V3|SMAD5_RAT Mothers against decapentaplegic homolog 5 OS=Rattus norvegicus GN=Smad5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query692
307193580468 Protein mothers against dpp [Harpegnatho 0.627 0.927 0.700 0.0
350419588468 PREDICTED: protein mothers against dpp-l 0.627 0.927 0.700 0.0
242025323459 protein mothers against dpp, putative [P 0.625 0.943 0.697 0.0
332026752469 Protein mothers against dpp [Acromyrmex 0.627 0.925 0.686 0.0
307167671469 Protein mothers against dpp [Camponotus 0.627 0.925 0.684 0.0
345484661486 PREDICTED: protein mothers against dpp [ 0.627 0.893 0.674 0.0
322801470469 hypothetical protein SINV_08921 [Solenop 0.627 0.925 0.682 0.0
157110270497 mothers against dpp protein [Aedes aegyp 0.621 0.865 0.687 0.0
340712860468 PREDICTED: LOW QUALITY PROTEIN: protein 0.627 0.927 0.698 0.0
118785428474 AGAP008551-PA [Anopheles gambiae str. PE 0.622 0.909 0.675 0.0
>gi|307193580|gb|EFN76318.1| Protein mothers against dpp [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/544 (70%), Positives = 401/544 (73%), Gaps = 110/544 (20%)

Query: 1   FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIP 60
           FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKK KG IEELERALSCPG PSKCVTIP
Sbjct: 22  FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKRKGAIEELERALSCPGTPSKCVTIP 81

Query: 61  RSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYK 120
           RSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLE CQ+PFSAKQK+VCINPYHYK
Sbjct: 82  RSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYK 141

Query: 121 RVESPVLPPIVVPRHSEFAPGHSLLPYQQMAEPTMPHNISYSNNGFN-------QPHSPL 173
           RVESPVLPP++VPRHSE+APGHSLLP+QQ+AEPTMPHN+SYS++GFN        P SP+
Sbjct: 142 RVESPVLPPVLVPRHSEYAPGHSLLPFQQLAEPTMPHNVSYSSSGFNATSASGVNPTSPM 201

Query: 174 SSVSS---PASSN--NPHSPYQSNGLPGKAQFNFEILSNFNYLVSTETPPPAYSPPQDEK 228
           SSV S   P S+   NP SPY +NGLP                   ETPPPAYSPP+D  
Sbjct: 202 SSVGSVPSPGSTTLPNPQSPYGTNGLP-------------------ETPPPAYSPPEDGS 242

Query: 229 HGSQSPHSENA-MDTGISSDVTPVPYQVTYFELLTCLMPKMNPNFEEYPTTHIIKMNLYS 287
              QSP S++  MDT    +V PV YQ                                 
Sbjct: 243 QTGQSPPSDSVPMDTSAPPEVAPVCYQ--------------------------------- 269

Query: 288 SFSPPQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRN 347
                 E P+WASIAYYELN RVGEVFHCQSHSVIVDGFTNPSNN +RFCLGQLSNVNRN
Sbjct: 270 ------EPPYWASIAYYELNCRVGEVFHCQSHSVIVDGFTNPSNNSDRFCLGQLSNVNRN 323

Query: 348 STIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSL 407
           STIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFH STVCKIP GCSL
Sbjct: 324 STIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHPSTVCKIPPGCSL 383

Query: 408 KIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLS 467
           KIFNNQEFA+LLSQSVNHGFEAVYELTKMCTI                            
Sbjct: 384 KIFNNQEFAQLLSQSVNHGFEAVYELTKMCTI---------------------------- 415

Query: 468 VIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPI 527
                      RMSFVKGWGAEYHRQDVTSTPCWIE HLHGPLQWLDKVL QMGSPH  I
Sbjct: 416 -----------RMSFVKGWGAEYHRQDVTSTPCWIEAHLHGPLQWLDKVLTQMGSPHNAI 464

Query: 528 SSVS 531
           SSVS
Sbjct: 465 SSVS 468

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350419588|ref|XP_003492235.1| PREDICTED: protein mothers against dpp-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|242025323|ref|XP_002433075.1| protein mothers against dpp, putative [Pediculus humanus corporis] gi|212518591|gb|EEB20337.1| protein mothers against dpp, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|332026752|gb|EGI66861.1| Protein mothers against dpp [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307167671|gb|EFN61174.1| Protein mothers against dpp [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345484661|ref|XP_001601460.2| PREDICTED: protein mothers against dpp [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|322801470|gb|EFZ22131.1| hypothetical protein SINV_08921 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|157110270|ref|XP_001651031.1| mothers against dpp protein [Aedes aegypti] gi|108878800|gb|EAT43025.1| AAEL005513-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|340712860|ref|XP_003394971.1| PREDICTED: LOW QUALITY PROTEIN: protein mothers against dpp-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|118785428|ref|XP_314661.3| AGAP008551-PA [Anopheles gambiae str. PEST] gi|46948818|gb|AAT07308.1| mothers against Dpp [Anopheles gambiae] gi|116127732|gb|EAA10070.3| AGAP008551-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query692
UNIPROTKB|F1P4N1476 SMAD9 "Uncharacterized protein 0.236 0.344 0.732 1.1e-167
UNIPROTKB|E1B2C7430 smad9 "Uncharacterized protein 0.241 0.388 0.720 1.8e-162
UNIPROTKB|E2R326469 SMAD9 "Uncharacterized protein 0.241 0.356 0.715 1.8e-162
UNIPROTKB|E2R327432 SMAD9 "Uncharacterized protein 0.241 0.386 0.715 2.9e-162
RGD|71004434 Smad9 "SMAD family member 9" [ 0.241 0.384 0.720 6.7e-161
UNIPROTKB|O54835434 Smad9 "Mothers against decapen 0.241 0.384 0.720 6.7e-161
FB|FBgn0011648455 Mad "Mothers against dpp" [Dro 0.241 0.367 0.826 6.9e-155
UNIPROTKB|F1MWL7344 SMAD9 "Uncharacterized protein 0.216 0.436 0.794 1e-151
UNIPROTKB|F1MD43465 SMAD5 "Uncharacterized protein 0.216 0.322 0.827 3.5e-141
UNIPROTKB|E2RCX7465 SMAD5 "Uncharacterized protein 0.216 0.322 0.827 3.5e-141
UNIPROTKB|F1P4N1 SMAD9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 671 (241.3 bits), Expect = 1.1e-167, Sum P(4) = 1.1e-167
 Identities = 123/168 (73%), Positives = 138/168 (82%)

Query:     1 FTSPAVKKLLGWKQGDEEEKWAEXXXXXXXXXXXXXXGDIEELERALSCPGQPSKCVTIP 60
             FTSPAVK+LLGWKQGDEEEKWAE              G +EELERALSCPGQPSKCVTIP
Sbjct:    13 FTSPAVKRLLGWKQGDEEEKWAEKAVDSLVKKLKKKKGAMEELERALSCPGQPSKCVTIP 72

Query:    61 RSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYK 120
             RSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLE C+FPF +KQK+VCINPYHY+
Sbjct:    73 RSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYR 132

Query:   121 RVESPVLPPIVVPRHSEFAPGHSLLP-YQQMA---EPTMPHNISYSNN 164
             RVE+PVLPP++VPRHSEF P  SLL  ++  +   EP MPHN +Y ++
Sbjct:   133 RVETPVLPPVLVPRHSEFNPHLSLLAKFRNTSLHSEPLMPHNATYPDS 180
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0005667 "transcription factor complex" evidence=IEA
GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0001657 "ureteric bud development" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0030509 "BMP signaling pathway" evidence=IEA
GO:0030901 "midbrain development" evidence=IEA
GO:0030902 "hindbrain development" evidence=IEA
GO:0051216 "cartilage development" evidence=IEA
GO:0060348 "bone development" evidence=IEA
GO:0071407 "cellular response to organic cyclic compound" evidence=IEA
UNIPROTKB|E1B2C7 smad9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R326 SMAD9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R327 SMAD9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|71004 Smad9 "SMAD family member 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O54835 Smad9 "Mothers against decapentaplegic homolog 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0011648 Mad "Mothers against dpp" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWL7 SMAD9 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MD43 SMAD5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCX7 SMAD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P42003MAD_DROMENo assigned EC number0.67790.62130.9450yesN/A
P70340SMAD1_MOUSENo assigned EC number0.63110.64010.9526yesN/A
Q15797SMAD1_HUMANNo assigned EC number0.63300.64010.9526yesN/A
P97588SMAD1_RATNo assigned EC number0.62820.64300.9508yesN/A
Q5R6H7SMAD5_PONABNo assigned EC number0.61040.62130.9247yesN/A
Q9I8V2SMAD1_DANRENo assigned EC number0.61150.66040.9682yesN/A
Q1JQA2SMAD1_BOVINNo assigned EC number0.63300.64010.9526yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query692
cd10497201 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 1e-138
cd10495182 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH 1e-123
cd10985191 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 ( 1e-106
cd00050170 cd00050, MH2, C-terminal Mad Homology 2 (MH2) doma 2e-96
pfam03166179 pfam03166, MH2, MH2 domain 5e-94
cd10490124 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 2e-89
smart00524171 smart00524, DWB, Domain B in dwarfin family protei 2e-85
cd10488123 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH 1e-70
cd10491124 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 ( 2e-67
cd00049121 cd00049, MH1, N-terminal Mad Homology 1 (MH1) doma 1e-65
smart00523109 smart00523, DWA, Domain A in dwarfin family protei 1e-53
pfam03165103 pfam03165, MH1, MH1 domain 8e-52
cd10498222 cd10498, MH2_SMAD_4, C-terminal Mad Homology 2 (MH 6e-51
cd10492125 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH 4e-44
cd10490124 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 2e-38
cd10488123 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH 4e-33
cd10491124 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 ( 5e-31
cd00049121 cd00049, MH1, N-terminal Mad Homology 1 (MH1) doma 1e-30
smart00523109 smart00523, DWA, Domain A in dwarfin family protei 5e-29
pfam03165103 pfam03165, MH1, MH1 domain 1e-28
cd10496165 cd10496, MH2_I-SMAD, C-terminal Mad Homology 2 (MH 1e-27
cd10492125 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH 7e-20
cd10493113 cd10493, MH1_SMAD_6, N-terminal Mad Homology 1 (MH 5e-19
cd10499174 cd10499, MH2_SMAD_6, C-terminal Mad Homology 2 (MH 6e-17
cd10489119 cd10489, MH1_SMAD_6_7, N-terminal Mad Homology 1 ( 6e-17
cd10493113 cd10493, MH1_SMAD_6, N-terminal Mad Homology 1 (MH 2e-14
cd10500171 cd10500, MH2_SMAD_7, C-terminal Mad Homology 2 (MH 2e-13
cd10489119 cd10489, MH1_SMAD_6_7, N-terminal Mad Homology 1 ( 6e-12
cd10494123 cd10494, MH1_SMAD_7, N-terminal Mad Homology 1 (MH 6e-11
cd10494123 cd10494, MH1_SMAD_7, N-terminal Mad Homology 1 (MH 2e-05
>gnl|CDD|199822 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9 Back     alignment and domain information 
 Score =  404 bits (1039), Expect = e-138
 Identities = 178/239 (74%), Positives = 187/239 (78%), Gaps = 39/239 (16%)

Query: 293 QEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIEN 352
           QE  +W SIAYYELN+RVGE FH  S S+IVDGFT+PSNN +RFCLG LSNVNRNSTIEN
Sbjct: 2   QEPKYWCSIAYYELNNRVGEAFHASSTSIIVDGFTDPSNNSDRFCLGLLSNVNRNSTIEN 61

Query: 353 TRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNN 412
           TRRHIGKGVHLYYVGGEVYAECLSDS+IFVQSRNCN+HHGFH +TVCKIP GCSLKIFNN
Sbjct: 62  TRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHPTTVCKIPPGCSLKIFNN 121

Query: 413 QEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILW 472
           QEFA+LLSQSVNHGFEAVYELTKMCTI                                 
Sbjct: 122 QEFAQLLSQSVNHGFEAVYELTKMCTI--------------------------------- 148

Query: 473 YFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVS 531
                 RMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVL QMGSPH PISSVS
Sbjct: 149 ------RMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS 201

The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD1, SMAD5 and SMAD9 (also known as SMAD8), are receptor regulated SMADs (R-SMADs). SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD5 is involved in BMP signal modulation and may also play a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 mediates the differentiation of mesenchymal stem cells (MSCs) into tendon-like cells by inhibiting the osteogenic pathway. Length = 201
>gnl|CDD|199820 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|199826 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3 Back     alignment and domain information
>gnl|CDD|199819 cd00050, MH2, C-terminal Mad Homology 2 (MH2) domain Back     alignment and domain information
>gnl|CDD|217398 pfam03166, MH2, MH2 domain Back     alignment and domain information
>gnl|CDD|199814 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8) Back     alignment and domain information
>gnl|CDD|197770 smart00524, DWB, Domain B in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|199812 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|199815 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3 Back     alignment and domain information
>gnl|CDD|199811 cd00049, MH1, N-terminal Mad Homology 1 (MH1) domain Back     alignment and domain information
>gnl|CDD|214708 smart00523, DWA, Domain A in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|217397 pfam03165, MH1, MH1 domain Back     alignment and domain information
>gnl|CDD|199823 cd10498, MH2_SMAD_4, C-terminal Mad Homology 2 (MH2) domain in SMAD4 Back     alignment and domain information
>gnl|CDD|199816 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH1) domain in SMAD4 Back     alignment and domain information
>gnl|CDD|199814 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8) Back     alignment and domain information
>gnl|CDD|199812 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|199815 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3 Back     alignment and domain information
>gnl|CDD|199811 cd00049, MH1, N-terminal Mad Homology 1 (MH1) domain Back     alignment and domain information
>gnl|CDD|214708 smart00523, DWA, Domain A in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|217397 pfam03165, MH1, MH1 domain Back     alignment and domain information
>gnl|CDD|199821 cd10496, MH2_I-SMAD, C-terminal Mad Homology 2 (MH2) domain in Inhibitory SMADs Back     alignment and domain information
>gnl|CDD|199816 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH1) domain in SMAD4 Back     alignment and domain information
>gnl|CDD|199817 cd10493, MH1_SMAD_6, N-terminal Mad Homology 1 (MH1) domain in SMAD6 Back     alignment and domain information
>gnl|CDD|199824 cd10499, MH2_SMAD_6, C-terminal Mad Homology 2 (MH2) domain in SMAD6 Back     alignment and domain information
>gnl|CDD|199813 cd10489, MH1_SMAD_6_7, N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7 Back     alignment and domain information
>gnl|CDD|199817 cd10493, MH1_SMAD_6, N-terminal Mad Homology 1 (MH1) domain in SMAD6 Back     alignment and domain information
>gnl|CDD|199825 cd10500, MH2_SMAD_7, C-terminal Mad Homology 2 (MH2) domain in SMAD7 Back     alignment and domain information
>gnl|CDD|199813 cd10489, MH1_SMAD_6_7, N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7 Back     alignment and domain information
>gnl|CDD|199818 cd10494, MH1_SMAD_7, N-terminal Mad Homology 1 (MH1) domain in SMAD7 Back     alignment and domain information
>gnl|CDD|199818 cd10494, MH1_SMAD_7, N-terminal Mad Homology 1 (MH1) domain in SMAD7 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 692
KOG3701|consensus411 100.0
cd00050176 MH2 MH2 domain; C terminal domain of SMAD family p 100.0
smart00524171 DWB Domain B in dwarfin family proteins. 100.0
PF03166181 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwa 100.0
cd00049121 MH1 MH1 is a small DNA binding domain, binding in 100.0
smart00523109 DWA Domain A in dwarfin family proteins. 100.0
PF03165103 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwa 100.0
smart00523109 DWA Domain A in dwarfin family proteins. 99.91
cd00049121 MH1 MH1 is a small DNA binding domain, binding in 99.89
KOG3701|consensus 411 99.89
PF03165103 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwa 99.88
PF10401180 IRF-3: Interferon-regulatory factor 3; InterPro: I 97.72
>KOG3701|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.5e-124  Score=999.00  Aligned_cols=398  Identities=58%  Similarity=0.978  Sum_probs=325.4

Q ss_pred             CCchhHHHHhhccc-CChhhHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCC-CCCCcEEecccCCCccccccccCCCeE
Q psy558            1 FTSPAVKKLLGWKQ-GDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPG-QPSKCVTIPRSLDGRLQVSHRKGLPHV   78 (692)
Q Consensus         1 ~~~~iV~~Ll~~rQ-G~EeE~fakkAIeSLVKKLKekk~eLesLi~AItt~g-~pSkCVTIpRtLDGRLQVagRKg~PHV   78 (692)
                      |+.|+|+.||+||| |+++|+|||||+||||||||||+++||+||+||+++| ++++||||||+|||||||+||||||||
T Consensus         7 ~~~p~v~~~~~~r~~~~~~e~~~~ka~~slvkklk~~~~~le~l~~av~s~g~~~~~CvtiprslD~Rlq~~~rkg~Phv   86 (411)
T KOG3701|consen    7 FTGPAVKDLLGPRQLGGEDEKFAEKAVESLVKKLKDKKGELENLIKAVESPGTKPTGCVTIPRSLDGRLQVAHRKGFPHV   86 (411)
T ss_pred             CCCcchhhccCccccCchhHHHHHHHHHHHHHHhhcccchHHHHHHHhcCCCCCCCceEECCCCCCccccccCCCCCCce
Confidence            78999999999999 9999999999999999999999999999999999998 779999999999999999999999999


Q ss_pred             EEEeeecCCCCCCCCCcccCCCCCCCCCCCCCcEEeCCCccccccCCCC-CCcccCCCCCCCCCCCCCcccc--CCCCCC
Q psy558           79 IYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVL-PPIVVPRHSEFAPGHSLLPYQQ--MAEPTM  155 (692)
Q Consensus        79 IYcRLWRWPDLh~~nELK~l~~Cq~afdlK~d~VCiNPYHYeRV~sP~i-pp~lv~~~~e~~~~~s~~~~~~--~~~~~~  155 (692)
                      ||||||||||||+++|||+|++|++||++|+++||||||||+||++|.+ ++.++++..++...++.+.-.+  .....|
T Consensus        87 iy~rlwRwpdl~~~~elk~l~~C~~a~~~~~~~vC~NPyHy~rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (411)
T KOG3701|consen   87 IYCRLWRWPDLQKNHELKRLECCEHAFESKSDNVCINPYHYSRVESPPILPPPLSPNSPPNDALKTLLDDGGVDIVNRSM  166 (411)
T ss_pred             EEEEeecccccccchhheecccCCccccCCCCCeeeCCcccceeecCCCCCcccCCCCCccccccchhhcccccccccCC
Confidence            9999999999999889999999999999999999999999999999944 5666665545443333211000  001233


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhccccccccCCCCCC-CCCCCCCCCCCCCCC
Q psy558          156 PHNISYSNNGFNQPHSPLSSVSSPASSNNPHSPYQSNGLPGKAQFNFEILSNFNYLVSTETPPP-AYSPPQDEKHGSQSP  234 (692)
Q Consensus       156 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~  234 (692)
                      |.|..+++ .+++              .++++|       +.           ..     .+.| +..++   .+... +
T Consensus       167 P~n~~~~~-~~~~--------------~~~~tp-------~~-----------~~-----~~~P~~~~~p---~s~~~-~  204 (411)
T KOG3701|consen  167 PQNNHSSD-LIGP--------------HAPHTP-------DS-----------SQ-----IPAPLGDGGP---SSDSS-A  204 (411)
T ss_pred             Cccccccc-cccc--------------CCCCCC-------Cc-----------cc-----CCCCCCCCCC---CCccc-c
Confidence            33333322 1110              000011       00           00     0000 00000   00000 0


Q ss_pred             CCCCCCCCCCCCCCcccccccchhhhhhccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEEEeecceeccee
Q psy558          235 HSENAMDTGISSDVTPVPYQVTYFELLTCLMPKMNPNFEEYPTTHIIKMNLYSSFSPPQEQPFWASIAYYELNSRVGEVF  314 (692)
Q Consensus       235 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WCsIaYyEl~~rVGe~F  314 (692)
                      .  ...++ .+.+..+                                       ..+.++++||+|+|||+++||||+|
T Consensus       205 ~--~~~P~-~~P~~~~---------------------------------------~~~~~~~~WcsIaYyEl~~rVGE~f  242 (411)
T KOG3701|consen  205 L--PGLPT-DSPDVGP---------------------------------------VHYEEPKSWCSIAYYELNTRVGETF  242 (411)
T ss_pred             c--CCCCC-CCCccCc---------------------------------------ccccCCcceeEEEEeeccccccceE
Confidence            0  00000 0001111                                       2234889999999999999999999


Q ss_pred             eeecCeEEEcCCCCCCCCCCeeeecCCcCCCCChhHHHHHhccCCcEEEEEEcCeEEEEecCCCeeEecCCCCCCCCCCC
Q psy558          315 HCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFH  394 (692)
Q Consensus       315 ~v~~~sV~VDGf~dps~~~~RfcLg~lsNv~R~~~~e~~R~~IGkGV~L~~~~G~Vwl~nlS~~pVFVqS~~ld~~~g~~  394 (692)
                      +|..++|+||||+|+ ++++|||||+|+|++|++++|++|+|||+||+|++++|+|||+|+|++||||||++||+.+|++
T Consensus       243 ~v~~~~~~vDG~~dp-s~~~rfcLgqlsn~~Rn~~~e~~R~~IG~GV~L~~~~gdVw~~n~sd~pIFVqS~~ln~~~g~~  321 (411)
T KOG3701|consen  243 HVPGPSITVDGFTDP-SNGSRFCLGQLSNVNRNEKVEKTRAHIGKGVQLSYENGDVWLYNLSDYPIFVQSPNLNYPNGRT  321 (411)
T ss_pred             EecCCceEEeeeecC-CCCCceeeccccCCCccchhHHHHhhccCceeeeEecCcEEEEecCCCceeeeCCCCcCCCCCc
Confidence            999999999999999 4669999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeecCCCCeEEEeeHHHHHHHHHHHhhcCchhhhhhccccccCcccccccCCCCCCcccccccccccchhhhheeee
Q psy558          395 QSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYF  474 (692)
Q Consensus       395 ~~~V~KI~pg~slKVFD~~~fa~~L~~~~~~~~~~v~~l~~~c~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (692)
                      +++||||+||++|||||+ +|+++|++++..|++++|+|++||+|                                   
T Consensus       322 ~~~v~ki~Pg~~iKvFd~-~~~~~l~~s~~~g~~~~~~l~~~ctI-----------------------------------  365 (411)
T KOG3701|consen  322 LDTVHKVPPGYSIKVFDF-EFAQQLPTSADPGFESVDQLRKMCTI-----------------------------------  365 (411)
T ss_pred             ccceEeeCCCceeEeech-HHHhhhhhcccCCCccccccccceeE-----------------------------------
Confidence            999999999999999999 89999999999999999999999998                                   


Q ss_pred             EEEeeEEEeecCCCcccccccccCceeEEEeccChhHHHHHHHhhcCCC
Q psy558          475 VLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSP  523 (692)
Q Consensus       475 ~~i~RISFvKGWG~~Y~Rq~ItstPCWIEI~L~~~Le~LD~VLsqmg~p  523 (692)
                          |||||||||++|+||+||+||||||||||+||+|||+||++||.|
T Consensus       366 ----riSFvKGWG~~Y~Rq~It~~PCWiEvhl~~p~~~lD~vl~~~~~~  410 (411)
T KOG3701|consen  366 ----RISFVKGWGECYSRQDITSTPCWIEVHLNGPLQWLDTVLTQMGSP  410 (411)
T ss_pred             ----EEEEeccccccccccccccCcceEEEecCCcHHHHHHHHhhcCCC
Confidence                999999999999999999999999999999999999999999854

>cd00050 MH2 MH2 domain; C terminal domain of SMAD family proteins, responsible for receptor interaction, transactivation, and homo- and heterooligomerisation; also known as Domain B in dwarfin family proteins Back     alignment and domain information
>smart00524 DWB Domain B in dwarfin family proteins Back     alignment and domain information
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth [] Back     alignment and domain information
>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove Back     alignment and domain information
>smart00523 DWA Domain A in dwarfin family proteins Back     alignment and domain information
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth [] Back     alignment and domain information
>smart00523 DWA Domain A in dwarfin family proteins Back     alignment and domain information
>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove Back     alignment and domain information
>KOG3701|consensus Back     alignment and domain information
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth [] Back     alignment and domain information
>PF10401 IRF-3: Interferon-regulatory factor 3; InterPro: IPR019471 This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query692
3gmj_D245 Crystal Structure Of Mad Mh2 Domain Length = 245 1e-99
1khu_A218 Smad1 Crystal Structure Reveals The Details Of Bmp 2e-97
3dit_A188 Crystal Structure Of Mad Mh2 Domain Length = 188 5e-95
1khx_A227 Crystal Structure Of A Phosphorylated Smad2 Length 1e-81
1mk2_A206 Smad3 Sbd Complex Length = 206 3e-81
1u7v_A198 Crystal Structure Of The Phosphorylated Smad2SMAD4 4e-81
1mjs_A197 Mh2 Domain Of Transcriptional Factor Smad3 Length = 6e-81
1u7f_A198 Crystal Structure Of The Phosphorylated Smad3SMAD4 3e-80
1dev_A196 Crystal Structure Of Smad2 Mh2 Domain Bound To The 2e-79
3kmp_A124 Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 4e-55
3kmp_A124 Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 2e-26
1ozj_A144 Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 1e-45
1ozj_A144 Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 7e-24
1mhd_A132 Crystal Structure Of A Smad Mh1 Domain Bound To Dna 1e-39
1mhd_A132 Crystal Structure Of A Smad Mh1 Domain Bound To Dna 3e-21
1dd1_A268 Crystal Structure Analysis Of The Smad4 Active Frag 3e-33
1mr1_A235 Crystal Structure Of A Smad4-Ski Complex Length = 2 3e-33
1ygs_A234 Crystal Structure Of The Smad4 Tumor Suppressor C-T 3e-33
1u7f_B239 Crystal Structure Of The Phosphorylated Smad3SMAD4 4e-33
1u7v_B236 Crystal Structure Of The Phosphorylated Smad2SMAD4 4e-33
1g88_A268 S4afl3arg515 Mutant Length = 268 2e-32
3qsv_A132 Structural Basis For Dna Recognition By Constitutiv 7e-25
3qsv_A132 Structural Basis For Dna Recognition By Constitutiv 2e-14
>pdb|3GMJ|D Chain D, Crystal Structure Of Mad Mh2 Domain Length = 245 Back     alignment and structure 
Iteration: 1

 Score =  360 bits (925), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/316 (61%), Positives = 205/316 (64%), Gaps = 80/316 (25%)
Query: 216 TPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQVTYFELLTCLMPKMNPNFEEY 275
           TPPPAYSP +D    S +P+    +      DV  V Y                      
Sbjct: 10  TPPPAYSPSEDGN--SNNPNDGGQLLDAQMGDVAQVSYS--------------------- 46
Query: 276 PTTHIIKMNLYSSFSPPQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNR 335
                             E  FWASIAYYELN RVGEVFHC ++SVIVDGFTNPSNN +R
Sbjct: 47  ------------------EPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDR 88
Query: 336 FCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQ 395
            CLGQLSNVNRNSTIENTRRHIGKGVHLYYV GEVYAECLSDSAIFVQSRNCN+ HGFH 
Sbjct: 89  CCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYQHGFHP 148
Query: 396 STVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIP 455
           STVCKIP GCSLKIFNNQEFA+LLSQSVN+GFEAVYELTKMCTI                
Sbjct: 149 STVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTI---------------- 192
Query: 456 FAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDK 515
                                  RMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDK
Sbjct: 193 -----------------------RMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDK 229
Query: 516 VLIQMGSPHQPISSVS 531
           VL QMGSPH  ISSVS
Sbjct: 230 VLTQMGSPHNAISSVS 245
>pdb|1KHU|A Chain A, Smad1 Crystal Structure Reveals The Details Of Bmp Signaling Pathway Length = 218 Back     alignment and structure
>pdb|3DIT|A Chain A, Crystal Structure Of Mad Mh2 Domain Length = 188 Back     alignment and structure
>pdb|1KHX|A Chain A, Crystal Structure Of A Phosphorylated Smad2 Length = 227 Back     alignment and structure
>pdb|1MK2|A Chain A, Smad3 Sbd Complex Length = 206 Back     alignment and structure
>pdb|1U7V|A Chain A, Crystal Structure Of The Phosphorylated Smad2SMAD4 Heterotrimeric Complex Length = 198 Back     alignment and structure
>pdb|1MJS|A Chain A, Mh2 Domain Of Transcriptional Factor Smad3 Length = 197 Back     alignment and structure
>pdb|1U7F|A Chain A, Crystal Structure Of The Phosphorylated Smad3SMAD4 Heterotrimeric Complex Length = 198 Back     alignment and structure
>pdb|1DEV|A Chain A, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad- Binding Domain Of Sara Length = 196 Back     alignment and structure
>pdb|3KMP|A Chain A, Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 124 Back     alignment and structure
>pdb|3KMP|A Chain A, Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 124 Back     alignment and structure
>pdb|1OZJ|A Chain A, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A Resolution Length = 144 Back     alignment and structure
>pdb|1OZJ|A Chain A, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A Resolution Length = 144 Back     alignment and structure
>pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain Bound To Dna Length = 132 Back     alignment and structure
>pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain Bound To Dna Length = 132 Back     alignment and structure
>pdb|1DD1|A Chain A, Crystal Structure Analysis Of The Smad4 Active Fragment Length = 268 Back     alignment and structure
>pdb|1MR1|A Chain A, Crystal Structure Of A Smad4-Ski Complex Length = 235 Back     alignment and structure
>pdb|1YGS|A Chain A, Crystal Structure Of The Smad4 Tumor Suppressor C-Terminal Domain Length = 234 Back     alignment and structure
>pdb|1U7F|B Chain B, Crystal Structure Of The Phosphorylated Smad3SMAD4 Heterotrimeric Complex Length = 239 Back     alignment and structure
>pdb|1U7V|B Chain B, Crystal Structure Of The Phosphorylated Smad2SMAD4 Heterotrimeric Complex Length = 236 Back     alignment and structure
>pdb|1G88|A Chain A, S4afl3arg515 Mutant Length = 268 Back     alignment and structure
>pdb|3QSV|A Chain A, Structural Basis For Dna Recognition By Constitutive Smad4 Mh1 Dimers Length = 132 Back     alignment and structure
>pdb|3QSV|A Chain A, Structural Basis For Dna Recognition By Constitutive Smad4 Mh1 Dimers Length = 132 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query692
3gmj_D245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 2e-87
1khx_A227 SMAD2; TGF-beta signaling, phosphorylation, recept 2e-86
1ygs_A234 SMAD4; tumor suppressor C-terminal domain, TGF-bet 6e-78
1dd1_A268 SMAD4; B-sheet sandwich helix-turn-helix, signalin 2e-75
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 1e-68
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 4e-32
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 1e-67
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 1e-30
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 2e-60
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 4e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Length = 245 Back     alignment and structure
 Score =  273 bits (698), Expect = 2e-87
 Identities = 195/323 (60%), Positives = 206/323 (63%), Gaps = 80/323 (24%)

Query: 209 NYLVSTETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQVTYFELLTCLMPKM 268
           +      TPPPAYSP +D    S +P+    +      DV  V Y               
Sbjct: 3   HMDSLAGTPPPAYSPSED--GNSNNPNDGGQLLDAQMGDVAQVSYS-------------- 46

Query: 269 NPNFEEYPTTHIIKMNLYSSFSPPQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTN 328
                                    E  FWASIAYYELN RVGEVFHC ++SVIVDGFTN
Sbjct: 47  -------------------------EPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTN 81

Query: 329 PSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCN 388
           PSNN +R CLGQLSNVNRNSTIENTRRHIGKGVHLYYV GEVYAECLSDSAIFVQSRNCN
Sbjct: 82  PSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCN 141

Query: 389 HHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNK 448
           + HGFH STVCKIP GCSLKIFNNQEFA+LLSQSVN+GFEAVYELTKMCTI         
Sbjct: 142 YQHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTI--------- 192

Query: 449 CNRTEIPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHG 508
                                         RMSFVKGWGAEYHRQDVTSTPCWIEIHLHG
Sbjct: 193 ------------------------------RMSFVKGWGAEYHRQDVTSTPCWIEIHLHG 222

Query: 509 PLQWLDKVLIQMGSPHQPISSVS 531
           PLQWLDKVL QMGSPH  ISSVS
Sbjct: 223 PLQWLDKVLTQMGSPHNAISSVS 245
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A Length = 227 Back     alignment and structure
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B* Length = 234 Back     alignment and structure
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A Length = 268 Back     alignment and structure
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Length = 144 Back     alignment and structure
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Length = 144 Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} Length = 124 Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} Length = 124 Back     alignment and structure
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Length = 132 Back     alignment and structure
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Length = 132 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query692
3gmj_D245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 100.0
1khx_A227 SMAD2; TGF-beta signaling, phosphorylation, recept 100.0
1dd1_A268 SMAD4; B-sheet sandwich helix-turn-helix, signalin 100.0
1ygs_A234 SMAD4; tumor suppressor C-terminal domain, TGF-bet 100.0
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 100.0
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 100.0
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 100.0
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 99.95
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 99.91
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 99.9
3a77_A242 IRF-3, interferon regulatory factor 3; phosphoryla 96.69
3dsh_A246 IRF-5, interferon regulatory factor 5; phosphoacti 96.38
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=2.8e-82  Score=643.53  Aligned_cols=199  Identities=90%  Similarity=1.457  Sum_probs=195.0

Q ss_pred             CCCccEEEEEEeecceecceeeeecCeEEEcCCCCCCCCCCeeeecCCcCCCCChhHHHHHhccCCcEEEEEEcCeEEEE
Q psy558          294 EQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAE  373 (692)
Q Consensus       294 ~~~~WCsIaYyEl~~rVGe~F~v~~~sV~VDGf~dps~~~~RfcLg~lsNv~R~~~~e~~R~~IGkGV~L~~~~G~Vwl~  373 (692)
                      ++++||+|+|||+|+||||+|+|++++|+||||+||+.+++|||||+|+|++|++++++||+|||+||+|++++|+||++
T Consensus        47 ep~~WcsIaYyEln~RVGe~F~a~~~sv~IDGf~dps~~~~RfcLg~lsNv~R~~~ve~tR~~IG~GV~L~~~~G~V~~~  126 (245)
T 3gmj_D           47 EPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAE  126 (245)
T ss_dssp             CCSCSEEEEEEETTEEEEEEEEECSSEEEEESSCCCCTTTSEEEGGGCCCTTCCHHHHHHHHHHTTCEEEEEETTEEEEE
T ss_pred             CCCceeEEEEeecCceeccceeecCCeEEEeCCcCCCCCCCceeecCccCCCCcHHHHHHHHHHhcCeEEEEECCEEEEE
Confidence            89999999999999999999999999999999999954459999999999999999999999999999999999999999


Q ss_pred             ecCCCeeEecCCCCCCCCCCCCCceeecCCCCeEEEeeHHHHHHHHHHHhhcCchhhhhhccccccCcccccccCCCCCC
Q psy558          374 CLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTE  453 (692)
Q Consensus       374 nlS~~pVFVqS~~ld~~~g~~~~~V~KI~pg~slKVFD~~~fa~~L~~~~~~~~~~v~~l~~~c~i~p~~~~~~~~~~~~  453 (692)
                      |+|+++|||||++||+++|+++++||||+||+++||||+++|+++|++++++++++||+|++||+|              
T Consensus       127 nlS~~~IFVqS~~~n~~~g~~~~tV~KI~pg~slKiFd~~~fa~~L~qs~~~g~~~v~~L~~~Cti--------------  192 (245)
T 3gmj_D          127 CLSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTI--------------  192 (245)
T ss_dssp             ECSSSCEEEEEHHHHHHTTCCTTCCEEECTTCEEEEECHHHHHHHHHHTTTTCSHHHHHHGGGGEE--------------
T ss_pred             ecCCCcEEECCCcccccCCCCccceEEeCCCCeEEEeCHHHHHHHHHHHhhcCCchhhhhhhccee--------------
Confidence            999999999999999999999999999999999999999999999999999999999999999998              


Q ss_pred             cccccccccccchhhhheeeeEEEeeEEEeecCCCcccccccccCceeEEEeccChhHHHHHHHhhcCCCCCCCcccc
Q psy558          454 IPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVS  531 (692)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~i~RISFvKGWG~~Y~Rq~ItstPCWIEI~L~~~Le~LD~VLsqmg~p~k~issVs  531 (692)
                                               |||||||||++|+||+||+|||||||+||+||+|||+||+|||+|+++|+|||
T Consensus       193 -------------------------RiSFvKGWG~~Y~Rq~ItstPCWiEI~L~~pLq~LD~vL~qmg~p~~~~ss~s  245 (245)
T 3gmj_D          193 -------------------------RMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNAISSVS  245 (245)
T ss_dssp             -------------------------EEEESSCCSTTSSCCSGGGSSSEEEEEEHHHHHHHHHHHTSSCCCSSCCCSCC
T ss_pred             -------------------------eeEeecCcCcccccCCcccCCEEEEEEcChHHHHHHHHHHhcCCCCCCCCCCC
Confidence                                     99999999999999999999999999999999999999999999999999986
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A Back     alignment and structure
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A Back     alignment and structure
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B* Back     alignment and structure
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Back     alignment and structure
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1 Back     alignment and structure
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Back     alignment and structure
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1 Back     alignment and structure
>3a77_A IRF-3, interferon regulatory factor 3; phosphorylated protein, activator, antiviral defense, DNA-BI HOST-virus interaction, nucleus, phosphoprotein; HET: SEP; 1.80A {Homo sapiens} PDB: 1j2f_A 1qwt_A 1zoq_A Back     alignment and structure
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 692
d1mjsa_190 b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapien 5e-99
d1ygsa_225 b.26.1.1 (A:) Smad4 tumor suppressor C-terminal do 7e-89
d1ozja_126 d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapien 4e-69
d1ozja_126 d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapien 1e-31
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: SMAD domain
domain: Smad3 MH2 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  300 bits (769), Expect = 5e-99
 Identities = 146/228 (64%), Positives = 164/228 (71%), Gaps = 40/228 (17%)

Query: 296 PFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRR 355
            FW SI+YYELN RVGE FH    S+ VDGFT+PSN+  RFCLG LSNVNRN+ +E TRR
Sbjct: 2   AFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNS-ERFCLGLLSNVNRNAAVELTRR 60

Query: 356 HIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEF 415
           HIG+GV LYY+GGEV+AECLSDSAIFVQS NCN  +G+H +TVCKIP GC+LKIFNNQEF
Sbjct: 61  HIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEF 120

Query: 416 AELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYFV 475
           A LL+QSVN GFEAVY+LT+MCTI                                    
Sbjct: 121 AALLAQSVNQGFEAVYQLTRMCTI------------------------------------ 144

Query: 476 LISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSP 523
              RMSFVKGWGAEY RQ VTSTPCWIE+HL+GPLQWLDKVL QMGSP
Sbjct: 145 ---RMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSP 189
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query692
d1mjsa_190 Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 960 100.0
d1ygsa_225 Smad4 tumor suppressor C-terminal domain {Human (H 100.0
d1ozja_126 SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606 100.0
d1ozja_126 SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606 99.92
d1qwta_239 Interferon regulatory factor 3 (IRF3), transactiva 97.53
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: SMAD domain
domain: Smad3 MH2 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-76  Score=580.26  Aligned_cols=190  Identities=76%  Similarity=1.339  Sum_probs=174.9

Q ss_pred             CCccEEEEEEeecceecceeeeecCeEEEcCCCCCCCCCCeeeecCCcCCCCChhHHHHHhccCCcEEEEEEcCeEEEEe
Q psy558          295 QPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAEC  374 (692)
Q Consensus       295 ~~~WCsIaYyEl~~rVGe~F~v~~~sV~VDGf~dps~~~~RfcLg~lsNv~R~~~~e~~R~~IGkGV~L~~~~G~Vwl~n  374 (692)
                      |++||+|+|||+|+||||+|+|+.++|+||||+|+ ++++|||||+|+|++|+++++++|+|||+||+|++++|+||++|
T Consensus         1 p~~Wc~IaY~El~~rVGe~f~~~~p~v~VDGf~d~-~~~~rfcLg~l~n~~R~~~v~~~R~~IG~GV~L~~~~g~Vw~~~   79 (190)
T d1mjsa_           1 PAFWCSISYYELNQRVGETFHASQPSMTVDGFTDP-SNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIGGEVFAEC   79 (190)
T ss_dssp             CCSSEEEEEEETTEECSCCEEECSSEEEEECCSSC-CBTTEEECSSCCCTTCCHHHHHHHHHHTTCEEEEEETTEEEEEE
T ss_pred             CcceeEEEEEecCCeeEccEEccCCEEEEecCcCC-CCCCeeEecccCCCCCcHHHHHHhhccCcEEEEEEECCeEEEEE
Confidence            58999999999999999999999999999999999 68999999999999999999999999999999999999999999


Q ss_pred             cCCCeeEecCCCCCCCCCCCCCceeecCCCCeEEEeeHHHHHHHHHHHhhcCchhhhhhccccccCcccccccCCCCCCc
Q psy558          375 LSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEI  454 (692)
Q Consensus       375 lS~~pVFVqS~~ld~~~g~~~~~V~KI~pg~slKVFD~~~fa~~L~~~~~~~~~~v~~l~~~c~i~p~~~~~~~~~~~~~  454 (692)
                      +|++||||||++||+++|+++++||||+||++|||||+++|+++|+++.+.+++++++|++||+|               
T Consensus        80 lS~~~VFVqS~~l~~~~~~~~~~V~Kv~pg~~lKvFd~~~f~~~l~~~~~~~~~~~~~l~~~c~i---------------  144 (190)
T d1mjsa_          80 LSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTI---------------  144 (190)
T ss_dssp             CSSSCEEEECHHHHTC-----CCCEEECTTCEEEEECHHHHHHHHHHHHHHCHHHHHGGGGGGEE---------------
T ss_pred             ecCCCEEEcCCCCCCcCCCCCCceEEeCCCCeEEeeChHHHHHHHHHHhccCCCCccccccceEE---------------
Confidence            99999999999999999999999999999999999999999999999999999999999999998               


Q ss_pred             ccccccccccchhhhheeeeEEEeeEEEeecCCCcccccccccCceeEEEeccChhHHHHHHHhhcCCCC
Q psy558          455 PFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPH  524 (692)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~i~RISFvKGWG~~Y~Rq~ItstPCWIEI~L~~~Le~LD~VLsqmg~p~  524 (692)
                                              |||||||||++|+||+||+|||||||+||+||+|||+||++||+|+
T Consensus       145 ------------------------RISFvKGWG~~Y~Rq~ItstPCWiEi~l~~pl~~ld~vL~~mg~p~  190 (190)
T d1mjsa_         145 ------------------------RMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPS  190 (190)
T ss_dssp             ------------------------EEEESCCC-------CCTTSSSEEEEEEHHHHHHHHHHHHHTCCCC
T ss_pred             ------------------------EEEEEcccCCCccCCCCCcCCEEEEEecCChhHHHHHHHhhcCCCC
Confidence                                    9999999999999999999999999999999999999999999985
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3), transactivation domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure