Psyllid ID: psy6542

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MGMLRRRPRESRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMARKAGKIYGTTDREKNSILGTRTANGN
Secondary Structure (PSIPRED)
ccccccccccccccccEEcccccccccccEEEEEEcccccccccccccHHHHHHHHHHHcccHHHHEEEEEEEEEEEEccccEEEEEEEEEcccccccccccccccccccccEEEEccccccHHHHHHHccccccHHHHHHHHcccccccccccccccEEEcccccEEEEcccccccccccccccccccccccHHHHHHcccccccccccccEEEcccccccccccccccccccHHcccccccccccccccccEEEEEEEccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEcEEEccccccccccccEEEEEcccccccHHHcccccHHHHHHHHHcccccEEEEEEEEcEEEEEEEccccEEEEEEEEccccccccHHHHHHHHHHHHccEHHcccccHHHHHHHHHHHcccHHHHHHHHHHcccEEEEcccHHHEEEcccccEEEcccccEEEccccccccccccccEEcHHHHHccccHHHHHHHHHHHHcccccccccccccccccEEEHHHHHcccccHEEEccccEEEEEEEcccEEEEEccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEccccc
Coil and Loop (DISEMBL)
mgmlrrrpresrvskwrvkppslkplgfpiqigmlrhrphesrvakWRPYIQEIFNHLRNEPFKKCVLLFKMNLykvtsepnshyiigvrqsgpkdqisrSKINRYHKKLRKCFIRRTVqllepvhtchsalnKNPLIAIFLTlsvpclhfrdlkpanilldehghvrisdlglacdfskkkphasvesdcILHGYIKKLGGPFVSAWQTRYAKLFpnrlelhpesgqskpelIFMDQIEEVSQDLITVKGEQCVQLkltrdtrivltnpvsqikgpfphvdeiglKEWSLSLRSAHKCSQELLGSMARKagkiygttdreknsilgtrtangn
Flexible Loop (DISEMBL)
mgmlrrrpresrvskwrvkppslkplgfpiqigmlrhrphesrvAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIgvrqsgpkdqisrsKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLkltrdtrivltnpvsqikgpfphVDEIGLKEWSLSLRSAHKCSQELLGSmarkagkiygttdreknsilgtrtangn
Low Complexity Region (SEG)
MGMLRRRPRESRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMARKAGKIYGTTDREKNSILGTRTANGN
Disordered region (IsUnstruct)
************************PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR***********KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLEL**********LIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELL******************************
Disordered Region (DISOPRED)
*******************PPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLEL**********LIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHK************************************
Disordered Region (DISEMBL)
****************RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMARKAGKIYGTTDREKNSILGTRTANGN
Disordered Region (DISPRO)
************VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMARKAG**********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMLRRRPRESRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMARKAGKIYGTTDREKNSILGTRTANGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
P32865	700	G protein-coupled recepto	yes	N/A	0.428	0.204	0.601	3e-47
Q09639	707	G protein-coupled recepto	yes	N/A	0.386	0.182	0.561	2e-36
Q64682	689	Beta-adrenergic receptor	N/A	N/A	0.128	0.062	0.829	3e-15
P25098	689	Beta-adrenergic receptor	yes	N/A	0.128	0.062	0.829	3e-15
P21146	689	Beta-adrenergic receptor	yes	N/A	0.128	0.062	0.829	3e-15
P26818	688	Beta-adrenergic receptor	no	N/A	0.128	0.062	0.829	4e-15
P26817	689	Beta-adrenergic receptor	yes	N/A	0.128	0.062	0.829	4e-15
Q99MK8	689	Beta-adrenergic receptor	yes	N/A	0.128	0.062	0.808	7e-15
P35626	688	Beta-adrenergic receptor	no	N/A	0.128	0.062	0.808	1e-14
P26819	688	Beta-adrenergic receptor	no	N/A	0.128	0.062	0.808	1e-14

>sp|P32865|GPRK1_DROME G protein-coupled receptor kinase 1 OS=Drosophila melanogaster GN=Gprk1 PE=2 SV=2

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 121/168 (72%), Gaps = 25/168 (14%)

Query: 180 KKKPHASV---ESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFM 236
           K+K H      ESDCILHGYIKKLGG F S WQT+YAKL+PNRLELH ESG +KPELIFM
Sbjct: 544 KQKQHFDADEKESDCILHGYIKKLGGSFASLWQTKYAKLYPNRLELHSESGNNKPELIFM 603

Query: 237 DQIEEVSQDLITVKGEQCVQLKL---TRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSL 293
           DQ+E++S D I  K E C+Q+++   TRD RI+LTN            DEIGLKEWS SL
Sbjct: 604 DQVEDISSDFILHKNENCIQIRINDGTRDGRIILTNS-----------DEIGLKEWSSSL 652

Query: 294 RSAHKCSQELLGSMARKAGKIYGTTDREKNS---ILG----TRTANGN 334
           RSAHK SQ+LLGSMA+KAGKIYG ++R+ N    I G    T+T+NG+
Sbjct: 653 RSAHKISQDLLGSMAKKAGKIYG-SERDVNKSMYIFGGNCSTKTSNGS 699

Specifically phosphorylates the activated forms of G protein-coupled receptors.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1EC: 6

>sp|Q09639|GRK2_CAEEL G protein-coupled receptor kinase 2 OS=Caenorhabditis elegans GN=grk-2 PE=3 SV=2

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/146 (56%), Positives = 101/146 (69%), Gaps = 17/146 (11%)

Query: 179 SKKKPHASVE---SDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIF 235
           SK+K   +VE   SD I+HGYIKKLGGPF SAWQT+Y KL+P+RLEL+PES  +KPEL+F
Sbjct: 544 SKQKIKVAVEEKDSDVIVHGYIKKLGGPFTSAWQTKYGKLYPSRLELYPESLTAKPELVF 603

Query: 236 MDQIEEVSQDLITVKGEQCVQLKLT---RDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLS 292
           MDQIE+V  ++ T+KGE  + +KL    ++ +I LTN            DEI LKEW  S
Sbjct: 604 MDQIEDVCAEMQTIKGETAIIVKLRDGFKEPKICLTNS-----------DEISLKEWHTS 652

Query: 293 LRSAHKCSQELLGSMARKAGKIYGTT 318
           LR+AHK SQELL  M RKA KIYG  
Sbjct: 653 LRTAHKVSQELLQRMGRKAIKIYGVN 678

Specifically phosphorylates the activated forms of G protein-coupled receptors.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q64682|ARBK1_MESAU Beta-adrenergic receptor kinase 1 OS=Mesocricetus auratus GN=ADRBK1 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%), Gaps = 4/47 (8%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

Specifically phosphorylates the agonist-occupied form of the beta-adrenergic and closely related receptors, probably inducing a desensitization of them.

Mesocricetus auratus (taxid: 10036)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 5

>sp|P25098|ARBK1_HUMAN Beta-adrenergic receptor kinase 1 OS=Homo sapiens GN=ADRBK1 PE=1 SV=2

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%), Gaps = 4/47 (8%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

Specifically phosphorylates the agonist-occupied form of the beta-adrenergic and closely related receptors, probably inducing a desensitization of them. Key regulator of LPAR1 signaling. Competes with RALA for binding to LPAR1 thus affecting the signaling properties of the receptor. Desensitizes LPAR1 and LPAR2 in a phosphorylation-independent manner.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 5

>sp|P21146|ARBK1_BOVIN Beta-adrenergic receptor kinase 1 OS=Bos taurus GN=ADRBK1 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%), Gaps = 4/47 (8%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

Specifically phosphorylates the agonist-occupied form of the beta-adrenergic and closely related receptors, probably inducing a desensitization of them. Key regulator of LPAR1 signaling. Competes with RALA for binding to LPAR1 thus affecting the signaling properties of the receptor. Desensitizes LPAR1 and LPAR2 in a phosphorylation-independent manner.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 5

>sp|P26818|ARBK2_BOVIN Beta-adrenergic receptor kinase 2 OS=Bos taurus GN=ADRBK2 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%), Gaps = 4/47 (8%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

Specifically phosphorylates the agonist-occupied form of the beta-adrenergic and closely related receptors, probably inducing a desensitization of them.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 5

>sp|P26817|ARBK1_RAT Beta-adrenergic receptor kinase 1 OS=Rattus norvegicus GN=Adrbk1 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%), Gaps = 4/47 (8%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

Specifically phosphorylates the agonist-occupied form of the beta-adrenergic and closely related receptors, probably inducing a desensitization of them.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q99MK8|ARBK1_MOUSE Beta-adrenergic receptor kinase 1 OS=Mus musculus GN=Adrbk1 PE=2 SV=2

 Score = 81.6 bits (200), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 42/47 (89%), Gaps = 4/47 (8%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKK+PHASV +    HGY+
Sbjct: 315 YRDLKPANILLDEHGHVRISDLGLACDFSKKRPHASVGT----HGYM 357

Specifically phosphorylates the agonist-occupied form of the beta-adrenergic and closely related receptors, probably inducing a desensitization of them.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 5

>sp|P35626|ARBK2_HUMAN Beta-adrenergic receptor kinase 2 OS=Homo sapiens GN=ADRBK2 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 41/47 (87%), Gaps = 4/47 (8%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGH RISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 315 YRDLKPANILLDEHGHARISDLGLACDFSKKKPHASVGT----HGYM 357

Specifically phosphorylates the agonist-occupied form of the beta-adrenergic and closely related receptors.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 5

>sp|P26819|ARBK2_RAT Beta-adrenergic receptor kinase 2 OS=Rattus norvegicus GN=Adrbk2 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 42/47 (89%), Gaps = 4/47 (8%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDE+GHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 315 YRDLKPANILLDEYGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

Specifically phosphorylates the agonist-occupied form of the beta-adrenergic and closely related receptors.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
242003622	695	cAMP-dependent protein kinase catalytic	0.404	0.194	0.666	1e-49
380023197	642	PREDICTED: LOW QUALITY PROTEIN: G protei	0.389	0.202	0.662	3e-47
328790520	686	PREDICTED: LOW QUALITY PROTEIN: G protei	0.389	0.189	0.662	3e-47
6175630	690	G protein-coupled receptor kinase type 2	0.398	0.192	0.650	4e-47
340719091	687	PREDICTED: G protein-coupled receptor ki	0.389	0.189	0.662	5e-47
307189223	649	G protein-coupled receptor kinase 1 [Cam	0.389	0.200	0.662	6e-47
156546725	686	PREDICTED: G protein-coupled receptor ki	0.389	0.189	0.668	7e-47
332017081	649	G protein-coupled receptor kinase 1 [Acr	0.389	0.200	0.655	1e-46
427784487	682	Putative g protein-coupled receptor kina	0.386	0.189	0.673	1e-46
307209239	645	G protein-coupled receptor kinase 1 [Har	0.419	0.217	0.614	2e-46

>gi|242003622|ref|XP_002422801.1| cAMP-dependent protein kinase catalytic subunit, putative [Pediculus humanus corporis] gi|212505659|gb|EEB10063.1| cAMP-dependent protein kinase catalytic subunit, putative [Pediculus humanus corporis]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/153 (66%), Positives = 119/153 (77%), Gaps = 18/153 (11%)

Query: 188 ESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLI 247
           ESDCILHGYIKKLGGPF SAWQTRYAKL+PNRLELHPESG +KPELIFMDQIE+VS D++
Sbjct: 555 ESDCILHGYIKKLGGPFASAWQTRYAKLYPNRLELHPESGNTKPELIFMDQIEDVSPDMV 614

Query: 248 TVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSM 307
            VK EQC+ ++ T+  ++VLTNP           DEIGLKEW+LSLRSAHK S ELLGSM
Sbjct: 615 QVKSEQCIVVR-TKIGKVVLTNP-----------DEIGLKEWALSLRSAHKRSLELLGSM 662

Query: 308 ARKAGKIYGTTDREKNS------ILGTRTANGN 334
           A+KAGKIYGT +++ N+        GTR  NGN
Sbjct: 663 AKKAGKIYGTDEKQGNNKNMTMISTGTRNTNGN 695

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023197|ref|XP_003695412.1| PREDICTED: LOW QUALITY PROTEIN: G protein-coupled receptor kinase 1-like [Apis florea]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 117/148 (79%), Gaps = 18/148 (12%)

Query: 189 SDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLIT 248
           SDCILHGYIKKLGGPF SAWQTRYAKL+PNRLELHPES  +KPEL+F+DQ+EEVS D   
Sbjct: 511 SDCILHGYIKKLGGPFASAWQTRYAKLYPNRLELHPES-TTKPELVFLDQVEEVSADFQH 569

Query: 249 VKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMA 308
           VKGEQC+ +++ RD +IVLTNP           DEI LKEW+LSLRSAHKCS E+LGSMA
Sbjct: 570 VKGEQCIVVRM-RDAKIVLTNP-----------DEISLKEWALSLRSAHKCSMEMLGSMA 617

Query: 309 RKAGKIYGTTDREKNSILGT--RTANGN 334
           +KAGKIYGT   E+++++    R+ NGN
Sbjct: 618 KKAGKIYGT---ERDAVIPAMQRSTNGN 642

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790520|ref|XP_396647.4| PREDICTED: LOW QUALITY PROTEIN: G protein-coupled receptor kinase 1 isoform 1 [Apis mellifera]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 117/148 (79%), Gaps = 18/148 (12%)

Query: 189 SDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLIT 248
           SDCILHGYIKKLGGPF SAWQTRYAKL+PNRLELHPES  +KPEL+F+DQ+EEVS D   
Sbjct: 555 SDCILHGYIKKLGGPFASAWQTRYAKLYPNRLELHPES-TTKPELVFLDQVEEVSADFQH 613

Query: 249 VKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMA 308
           VKGEQC+ +++ RD +IVLTNP           DEI LKEW+LSLRSAHKCS E+LGSMA
Sbjct: 614 VKGEQCIVVRM-RDAKIVLTNP-----------DEISLKEWALSLRSAHKCSMEMLGSMA 661

Query: 309 RKAGKIYGTTDREKNSILGT--RTANGN 334
           +KAGKIYGT   E+++++    R+ NGN
Sbjct: 662 KKAGKIYGT---ERDAVIPAMQRSTNGN 686

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|6175630|gb|AAF05109.1|AF157046_1 G protein-coupled receptor kinase type 2 [Homarus americanus]

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/146 (65%), Positives = 112/146 (76%), Gaps = 13/146 (8%)

Query: 189 SDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLIT 248
           SDCI+HGYIKKLGGPF SAWQTRYAKL+PNR+ELH ES   KPELIFMDQ+++VS D + 
Sbjct: 558 SDCIIHGYIKKLGGPFTSAWQTRYAKLYPNRVELHSESSSGKPELIFMDQLDDVSSDFVQ 617

Query: 249 VKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMA 308
           +KGE C+ LK T+D++IVLTNP           DEIGLKEWS+SLRSAHK S ELL +MA
Sbjct: 618 IKGENCIVLK-TKDSKIVLTNP-----------DEIGLKEWSMSLRSAHKMSLELLSNMA 665

Query: 309 RKAGKIYGTTDREKNSILGTRTANGN 334
           +KAGKIYGT    K S++  R  NGN
Sbjct: 666 KKAGKIYGTEGNNKPSLMA-RNGNGN 690

Source: Homarus americanus

Species: Homarus americanus

Genus: Homarus

Family: Nephropidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719091|ref|XP_003397990.1| PREDICTED: G protein-coupled receptor kinase 1-like [Bombus terrestris] gi|350423291|ref|XP_003493433.1| PREDICTED: G protein-coupled receptor kinase 1-like [Bombus impatiens]

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 118/148 (79%), Gaps = 18/148 (12%)

Query: 189 SDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLIT 248
           SDCILHGYIKKLGGPF SAWQTRYAKL+PNRLEL+PES  +KPEL+F+DQ+EEVS DL  
Sbjct: 556 SDCILHGYIKKLGGPFASAWQTRYAKLYPNRLELYPES-TTKPELVFLDQVEEVSADLQH 614

Query: 249 VKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMA 308
           VKGEQC+ +++ RD +IVLTNP           DEI LKEW+LSLRSAHKCS E+LGSMA
Sbjct: 615 VKGEQCIVVRM-RDAKIVLTNP-----------DEISLKEWALSLRSAHKCSMEMLGSMA 662

Query: 309 RKAGKIYGTTDREKNSILGT--RTANGN 334
           +KAGKIYGT   E+++++    R+ NGN
Sbjct: 663 KKAGKIYGT---ERDAVIPAMQRSTNGN 687

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189223|gb|EFN73671.1| G protein-coupled receptor kinase 1 [Camponotus floridanus]

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 116/148 (78%), Gaps = 18/148 (12%)

Query: 189 SDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLIT 248
           SDCILHGYIKKLGGPF SAWQTRYAKL+PNRLELHPES  +KPEL+F+DQ+EEV  DL  
Sbjct: 518 SDCILHGYIKKLGGPFASAWQTRYAKLYPNRLELHPESA-TKPELVFLDQVEEVGADLQL 576

Query: 249 VKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMA 308
           VKGEQC+ ++ TRD +IVLTN            DEI LKEW+LSLRSAHKCS E+LG+MA
Sbjct: 577 VKGEQCIVMR-TRDAKIVLTN-----------ADEISLKEWALSLRSAHKCSMEMLGNMA 624

Query: 309 RKAGKIYGTTDREKNSIL--GTRTANGN 334
           RKAGKIYGT   E+++++    R+ NGN
Sbjct: 625 RKAGKIYGT---ERDAVIPATQRSTNGN 649

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546725|ref|XP_001604700.1| PREDICTED: G protein-coupled receptor kinase 1-like [Nasonia vitripennis]

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 99/148 (66%), Positives = 117/148 (79%), Gaps = 18/148 (12%)

Query: 189 SDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLIT 248
           SDCILHGYIKKLGGPF SAWQTRYAKL+PNRLELHPES  +KPEL+F+DQ+EEVS DL  
Sbjct: 555 SDCILHGYIKKLGGPFASAWQTRYAKLYPNRLELHPESA-TKPELVFLDQVEEVSSDLQH 613

Query: 249 VKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMA 308
           VKGEQC+ ++ TRD +IVLTNP           DEI LKEW++SLRSAHK S E+LG+MA
Sbjct: 614 VKGEQCIIVR-TRDAKIVLTNP-----------DEISLKEWAISLRSAHKSSMEMLGNMA 661

Query: 309 RKAGKIYGTTDREKNSIL--GTRTANGN 334
           RKAGKIYGT   E++S++    R+ NGN
Sbjct: 662 RKAGKIYGT---ERDSVIPATQRSTNGN 686

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017081|gb|EGI57880.1| G protein-coupled receptor kinase 1 [Acromyrmex echinatior]

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/148 (65%), Positives = 116/148 (78%), Gaps = 18/148 (12%)

Query: 189 SDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLIT 248
           SDCILHGYIKKLGGPF SAWQTRYAKL+PNRLELHPES  +KPEL+F+DQ+EEV  DL  
Sbjct: 518 SDCILHGYIKKLGGPFASAWQTRYAKLYPNRLELHPESA-TKPELVFLDQVEEVGADLQL 576

Query: 249 VKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMA 308
           VKGEQC+ ++ T+D +IVLTN            DEI LKEW+LSLRSAHKCS E+LG+MA
Sbjct: 577 VKGEQCIVMR-TKDAKIVLTN-----------ADEISLKEWALSLRSAHKCSMEMLGNMA 624

Query: 309 RKAGKIYGTTDREKNSIL--GTRTANGN 334
           RKAGKIYGT   E+++++    R+ NGN
Sbjct: 625 RKAGKIYGT---ERDAVIPATQRSTNGN 649

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427784487|gb|JAA57695.1| Putative g protein-coupled receptor kinase 1 [Rhipicephalus pulchellus]

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/141 (67%), Positives = 111/141 (78%), Gaps = 12/141 (8%)

Query: 188 ESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLI 247
           ESDCI+HGYIKKLGGPF SA+QTRY KL+PNRLELH ES  +KPELIFMDQ+E+V  D +
Sbjct: 540 ESDCIIHGYIKKLGGPFASAFQTRYGKLYPNRLELHTESSSAKPELIFMDQLEDVCSDYV 599

Query: 248 TVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSM 307
            VKGEQC+ LK+  DT++VLTNP           DEIGLKEW LSLRS  K SQELL SM
Sbjct: 600 QVKGEQCIVLKMKGDTKVVLTNP-----------DEIGLKEWLLSLRSTLKDSQELLASM 648

Query: 308 ARKAGKIYGTTDREKNSILGT 328
           A+KAGKIYGTTD  +N++LG+
Sbjct: 649 AKKAGKIYGTTDN-RNNLLGS 668

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209239|gb|EFN86346.1| G protein-coupled receptor kinase 1 [Harpegnathos saltator]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/161 (61%), Positives = 121/161 (75%), Gaps = 21/161 (13%)

Query: 179 SKKKPHASVE---SDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIF 235
           +K+K H   +   SDCILHGYI+KLGGPF S WQTRYAKL+PNRLELHPES  +KPEL+F
Sbjct: 501 AKQKQHFDADEKGSDCILHGYIRKLGGPFASTWQTRYAKLYPNRLELHPESA-TKPELVF 559

Query: 236 MDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRS 295
           +DQ+EEV  DL  VKGEQC+ ++ TRD +IVLTN            DEI LKEW+LSLRS
Sbjct: 560 LDQVEEVGADLQHVKGEQCIVVR-TRDAKIVLTN-----------ADEISLKEWALSLRS 607

Query: 296 AHKCSQELLGSMARKAGKIYGTTDREKNSIL--GTRTANGN 334
           AHKCS E+LG+MARKAGKIYGT   E+++++    R+ NGN
Sbjct: 608 AHKCSMEMLGNMARKAGKIYGT---ERDAVIPATQRSTNGN 645

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
FB|FBgn0260798	700	Gprk1 "G protein-coupled recep	0.428	0.204	0.601	3.8e-68
WB|WBGene00001709	707	grk-2 [Caenorhabditis elegans	0.380	0.179	0.569	1.7e-33
UNIPROTKB|F1N7J3	652	ADRBK1 "Beta-adrenergic recept	0.128	0.065	0.829	2.1e-29
UNIPROTKB|F1RUX3	652	ADRBK1 "Uncharacterized protei	0.128	0.065	0.829	2.6e-29
UNIPROTKB|P21146	689	ADRBK1 "Beta-adrenergic recept	0.128	0.062	0.829	2.7e-29
UNIPROTKB|E2R5J6	689	ADRBK1 "Uncharacterized protei	0.128	0.062	0.829	3.4e-29
UNIPROTKB|P25098	689	ADRBK1 "Beta-adrenergic recept	0.128	0.062	0.829	4.3e-29
MGI|MGI:87940	689	Adrbk1 "adrenergic receptor ki	0.128	0.062	0.808	8.6e-29
RGD|2062	689	Adrbk1 "adrenergic, beta, rece	0.128	0.062	0.829	1.8e-28
UNIPROTKB|P26817	689	Adrbk1 "Beta-adrenergic recept	0.128	0.062	0.829	1.8e-28

FB|FBgn0260798 Gprk1 "G protein-coupled receptor kinase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 466 (169.1 bits), Expect = 3.8e-68, Sum P(3) = 3.8e-68
 Identities = 101/168 (60%), Positives = 121/168 (72%)

Query:   180 KKKPHASV---ESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFM 236
             K+K H      ESDCILHGYIKKLGG F S WQT+YAKL+PNRLELH ESG +KPELIFM
Sbjct:   544 KQKQHFDADEKESDCILHGYIKKLGGSFASLWQTKYAKLYPNRLELHSESGNNKPELIFM 603

Query:   237 DQIEEVSQDLITVKGEQCVQLKL---TRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSL 293
             DQ+E++S D I  K E C+Q+++   TRD RI+LTN            DEIGLKEWS SL
Sbjct:   604 DQVEDISSDFILHKNENCIQIRINDGTRDGRIILTNS-----------DEIGLKEWSSSL 652

Query:   294 RSAHKCSQELLGSMARKAGKIYGTTDREKNS---ILG----TRTANGN 334
             RSAHK SQ+LLGSMA+KAGKIYG+ +R+ N    I G    T+T+NG+
Sbjct:   653 RSAHKISQDLLGSMAKKAGKIYGS-ERDVNKSMYIFGGNCSTKTSNGS 699

GO:0004703 "G-protein coupled receptor kinase activity" evidence=IEA;ISS;NAS

GO:0006468 "protein phosphorylation" evidence=ISS;IMP;NAS

GO:0007165 "signal transduction" evidence=ISS

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=NAS

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0050254 "rhodopsin kinase activity" evidence=IMP

GO:0007603 "phototransduction, visible light" evidence=IMP

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0016060 "metarhodopsin inactivation" evidence=IMP

GO:0005524 "ATP binding" evidence=IMP

GO:0001664 "G-protein coupled receptor binding" evidence=IPI

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IGI

WB|WBGene00001709 grk-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 372 (136.0 bits), Expect = 1.7e-33, P = 1.7e-33
 Identities = 82/144 (56%), Positives = 101/144 (70%)

Query:   179 SKKKPHASVE---SDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIF 235
             SK+K   +VE   SD I+HGYIKKLGGPF SAWQT+Y KL+P+RLEL+PES  +KPEL+F
Sbjct:   544 SKQKIKVAVEEKDSDVIVHGYIKKLGGPFTSAWQTKYGKLYPSRLELYPESLTAKPELVF 603

Query:   236 MDQIEEVSQDLITVKGEQCVQLKLT---RDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLS 292
             MDQIE+V  ++ T+KGE  + +KL    ++ +I LTN            DEI LKEW  S
Sbjct:   604 MDQIEDVCAEMQTIKGETAIIVKLRDGFKEPKICLTNS-----------DEISLKEWHTS 652

Query:   293 LRSAHKCSQELLGSMARKAGKIYG 316
             LR+AHK SQELL  M RKA KIYG
Sbjct:   653 LRTAHKVSQELLQRMGRKAIKIYG 676

GO:0004703 "G-protein coupled receptor kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0042048 "olfactory behavior" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0032501 "multicellular organismal process" evidence=IGI

GO:0040010 "positive regulation of growth rate" evidence=IGI

GO:0006972 "hyperosmotic response" evidence=IMP

UNIPROTKB|F1N7J3 ADRBK1 "Beta-adrenergic receptor kinase 1" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:   151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
             +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct:   278 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 320

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0045988 "negative regulation of striated muscle contraction" evidence=IEA

GO:0031755 "Edg-2 lysophosphatidic acid receptor binding" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007217 "tachykinin receptor signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004703 "G-protein coupled receptor kinase activity" evidence=IEA

GO:0003108 "negative regulation of the force of heart contraction by chemical signal" evidence=IEA

GO:0002029 "desensitization of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1RUX3 ADRBK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:   151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
             +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct:   278 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 320

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0045988 "negative regulation of striated muscle contraction" evidence=IEA

GO:0031755 "Edg-2 lysophosphatidic acid receptor binding" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007217 "tachykinin receptor signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004703 "G-protein coupled receptor kinase activity" evidence=IEA

GO:0003108 "negative regulation of the force of heart contraction by chemical signal" evidence=IEA

GO:0002029 "desensitization of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|P21146 ADRBK1 "Beta-adrenergic receptor kinase 1" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:   151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
             +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct:   315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

GO:0031694 "alpha-2A adrenergic receptor binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=ISS;IDA

GO:0004703 "G-protein coupled receptor kinase activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IC;ISS;IDA

GO:0009966 "regulation of signal transduction" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IDA

GO:0004672 "protein kinase activity" evidence=ISS;IDA

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0045988 "negative regulation of striated muscle contraction" evidence=IMP

GO:0018105 "peptidyl-serine phosphorylation" evidence=IDA

GO:0003108 "negative regulation of the force of heart contraction by chemical signal" evidence=IMP

GO:0002029 "desensitization of G-protein coupled receptor protein signaling pathway" evidence=ISS;IMP

GO:0007507 "heart development" evidence=ISS

GO:0002026 "regulation of the force of heart contraction" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0031755 "Edg-2 lysophosphatidic acid receptor binding" evidence=ISS

GO:0002031 "G-protein coupled receptor internalization" evidence=IDA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0007217 "tachykinin receptor signaling pathway" evidence=IEA

GO:0047696 "beta-adrenergic receptor kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E2R5J6 ADRBK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 199 (75.1 bits), Expect = 3.4e-29, Sum P(3) = 3.4e-29
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:   151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
             +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct:   315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

GO:0005524 "ATP binding" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0004703 "G-protein coupled receptor kinase activity" evidence=IEA

UNIPROTKB|P25098 ADRBK1 "Beta-adrenergic receptor kinase 1" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 4.3e-29, Sum P(3) = 4.3e-29
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:   151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
             +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct:   315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

GO:0005543 "phospholipid binding" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0047696 "beta-adrenergic receptor kinase activity" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0031755 "Edg-2 lysophosphatidic acid receptor binding" evidence=IDA

GO:0031623 "receptor internalization" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007202 "activation of phospholipase C activity" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0002029 "desensitization of G-protein coupled receptor protein signaling pathway" evidence=ISS

GO:0004703 "G-protein coupled receptor kinase activity" evidence=ISS

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISS

GO:0003108 "negative regulation of the force of heart contraction by chemical signal" evidence=IMP

GO:0045988 "negative regulation of striated muscle contraction" evidence=IMP

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0004672 "protein kinase activity" evidence=ISS

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0007217 "tachykinin receptor signaling pathway" evidence=IDA

GO:0033605 "positive regulation of catecholamine secretion" evidence=ISS

GO:0031694 "alpha-2A adrenergic receptor binding" evidence=ISS

MGI|MGI:87940 Adrbk1 "adrenergic receptor kinase, beta 1" [Mus musculus (taxid:10090)]

 Score = 196 (74.1 bits), Expect = 8.6e-29, Sum P(3) = 8.6e-29
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query:   151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
             +RDLKPANILLDEHGHVRISDLGLACDFSKK+PHASV +    HGY+
Sbjct:   315 YRDLKPANILLDEHGHVRISDLGLACDFSKKRPHASVGT----HGYM 357

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002026 "regulation of the force of heart contraction" evidence=IGI

GO:0002029 "desensitization of G-protein coupled receptor protein signaling pathway" evidence=ISO;IGI;IMP

GO:0003108 "negative regulation of the force of heart contraction by chemical signal" evidence=ISO

GO:0004672 "protein kinase activity" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0004703 "G-protein coupled receptor kinase activity" evidence=ISO;IMP;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005901 "caveola" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO;IDA;IMP

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO;IDA

GO:0007217 "tachykinin receptor signaling pathway" evidence=ISO

GO:0007507 "heart development" evidence=IMP

GO:0014070 "response to organic cyclic compound" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IDA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IDA

GO:0030424 "axon" evidence=ISO

GO:0031623 "receptor internalization" evidence=ISO

GO:0031755 "Edg-2 lysophosphatidic acid receptor binding" evidence=ISO

GO:0033605 "positive regulation of catecholamine secretion" evidence=ISO

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0042699 "follicle-stimulating hormone signaling pathway" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0045744 "negative regulation of G-protein coupled receptor protein signaling pathway" evidence=ISO

GO:0045988 "negative regulation of striated muscle contraction" evidence=ISO

GO:0047696 "beta-adrenergic receptor kinase activity" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

RGD|2062 Adrbk1 "adrenergic, beta, receptor kinase 1" [Rattus norvegicus (taxid:10116)]

 Score = 199 (75.1 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:   151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
             +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct:   315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

GO:0002026 "regulation of the force of heart contraction" evidence=ISO

GO:0002029 "desensitization of G-protein coupled receptor protein signaling pathway" evidence=IEA;IC;ISO;IMP;IDA

GO:0003108 "negative regulation of the force of heart contraction by chemical signal" evidence=IEA;ISO

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004703 "G-protein coupled receptor kinase activity" evidence=IEA;ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA

GO:0005901 "caveola" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=ISO;IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO;IDA

GO:0007217 "tachykinin receptor signaling pathway" evidence=IEA;ISO

GO:0007507 "heart development" evidence=IEA;ISO

GO:0007568 "aging" evidence=IEP

GO:0014070 "response to organic cyclic compound" evidence=IDA

GO:0016020 "membrane" evidence=IEA;ISO

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA;ISO

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA;ISO

GO:0030424 "axon" evidence=IDA

GO:0031623 "receptor internalization" evidence=IEA;ISO

GO:0031755 "Edg-2 lysophosphatidic acid receptor binding" evidence=IEA;ISO

GO:0033605 "positive regulation of catecholamine secretion" evidence=IDA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0042699 "follicle-stimulating hormone signaling pathway" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0045744 "negative regulation of G-protein coupled receptor protein signaling pathway" evidence=IDA

GO:0045988 "negative regulation of striated muscle contraction" evidence=IEA;ISO

GO:0047696 "beta-adrenergic receptor kinase activity" evidence=IDA

GO:0060048 "cardiac muscle contraction" evidence=IEA;ISO

UNIPROTKB|P26817 Adrbk1 "Beta-adrenergic receptor kinase 1" [Rattus norvegicus (taxid:10116)]

 Score = 199 (75.1 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:   151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
             +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct:   315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

GO:0005524 "ATP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32865	GPRK1_DROME	2, ., 7, ., 1, 1, ., 1, 6	0.6011	0.4281	0.2042	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	334
cd01240	119	cd01240, PH_GRK2_subgroup, G Protein-Coupled Recep	1e-50
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	2e-20
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	1e-18
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	5e-14
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	8e-10
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	7e-09
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	9e-09
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	2e-08
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-08
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	1e-07
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-07
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	3e-07
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	4e-07
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	5e-07
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	7e-07
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	8e-07
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	1e-06
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	1e-06
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-06
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	4e-06
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	9e-06
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-05
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-05
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-05
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	4e-05
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	4e-05
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	4e-05
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	5e-05
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	5e-05
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	6e-05
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	7e-05
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	7e-05
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	8e-05
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	1e-04
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-04
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-04
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	1e-04
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-04
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-04
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	1e-04
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-04
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-04
pfam00169	101	pfam00169, PH, PH domain	2e-04
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	3e-04
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	3e-04
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	4e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	4e-04
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-04
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	4e-04
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	5e-04
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	5e-04
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	6e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	7e-04
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	7e-04
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	8e-04
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	0.001
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	0.001
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	0.001
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	0.001
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	0.001
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	0.001
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	0.001
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	0.001
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	0.002
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	0.002
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	0.002
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	0.002
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	0.002
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	0.002
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	0.002
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	0.002
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	0.002
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	0.002
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	0.003
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	0.003
smart00233	102	smart00233, PH, Pleckstrin homology domain	0.003
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	0.003
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	0.003
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	0.004
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	0.004
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	0.004

>gnl|CDD|241273 cd01240, PH_GRK2_subgroup, G Protein-Coupled Receptor Kinase 2 subgroup pleckstrin homology (PH) domain

 Score =  163 bits (415), Expect = 1e-50
 Identities = 55/131 (41%), Positives = 69/131 (52%), Gaps = 17/131 (12%)

Query: 188 ESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESG--QSKPELIFMDQIEEVSQD 245
             DCILHGY+ KLGGPF+S WQ RY  LFPNRLE   E    ++  EL  MD +EE    
Sbjct: 4   GKDCILHGYLLKLGGPFLSQWQKRYFYLFPNRLEWRGEGESQKNLLELESMDSVEE---- 59

Query: 246 LITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLG 305
              +KGE+C+ LKL    +  +    S          E  L +W   LR A + +Q LL 
Sbjct: 60  -TQIKGEKCILLKLKDGGKQFILRCDS----------EPELVQWKKELREAFREAQRLLR 108

Query: 306 SMARKAGKIYG 316
            M +KA K YG
Sbjct: 109 RMPKKASKQYG 119

GRKs are a family of serine-threonine kinases which phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. There are seven mammalian GRKs (GRK1-7) grouped into three subfamilies: GRK1 (GRK1 and 7), GRK2 (GRK2 and 3), and GRK4 (GRK4-6). GRKs have three functional components: an N-terminal Regulators of G-protein signaling (RGS) which interacts with the seven-trans-membrane helical receptor protein and/or other membrane targets, a central catalytic protein kinase C (PKc) domain, and a C-terminal section containing a autophosphorylation region and a variable region that mediates membrane association. In both GRK2 (also known as beta-adrenergic receptor kinase-1) and GRK3 (beta-adrenergic receptor kinase-2), the C-terminal variable region contains a PH domain which gives binding specificity to Gbetagamma proteins. The GRK2 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 119

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 88.8 bits (220), Expect = 2e-20
 Identities = 39/47 (82%), Positives = 42/47 (89%), Gaps = 4/47 (8%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 120 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 162

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 84.3 bits (208), Expect = 1e-18
 Identities = 39/47 (82%), Positives = 42/47 (89%), Gaps = 4/47 (8%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 120 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 162

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 70.6 bits (173), Expect = 5e-14
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 14/69 (20%)

Query: 139 AIFLTLSVPC----LH-----FRDLKPANILLDEHGHVRISDLGLACDFS-KKKPHASVE 188
           AIF    + C    LH     +RDLKP N+LLD+HG+VRISDLGLA +    KK      
Sbjct: 97  AIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAG 156

Query: 189 SDCILHGYI 197
           +     GY+
Sbjct: 157 T----PGYM 161

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 57.9 bits (141), Expect = 8e-10
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGY 196
           + L++  LH     +RDLKP NILLD  GH++++D GLA + S +    +  + C    Y
Sbjct: 102 IVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTN--TFCGTPEY 159

Query: 197 I 197
           +
Sbjct: 160 L 160

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 55.3 bits (134), Expect = 7e-09
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 19/79 (24%)

Query: 109 KLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR 168
              K       Q+L  +   HS                  +H RDLKP NILLDE+G V+
Sbjct: 98  DEAKKIAL---QILRGLEYLHSN---------------GIIH-RDLKPENILLDENGVVK 138

Query: 169 ISDLGLACDFSKKKPHASV 187
           I+D GLA    K     + 
Sbjct: 139 IADFGLAKKLLKSSSSLTT 157

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 55.2 bits (134), Expect = 9e-09
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 17/82 (20%)

Query: 107 HKKLRKCFIRR-TVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG 165
             +L +   R    Q+L  +   HS   K              +H RDLKP NILLDE G
Sbjct: 91  RGRLSEDEARFYLRQILSALEYLHS---KG------------IVH-RDLKPENILLDEDG 134

Query: 166 HVRISDLGLACDFSKKKPHASV 187
           HV+++D GLA      +   + 
Sbjct: 135 HVKLADFGLARQLDPGEKLTTF 156

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 20/25 (80%), Positives = 24/25 (96%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLA 175
           +RDLKP NILLD++GH+RISDLGLA
Sbjct: 125 YRDLKPENILLDDYGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDFSK 180
           +H RD+KP NILLDE GHV I+D  +A   + 
Sbjct: 122 IH-RDIKPDNILLDEQGHVHITDFNIATKVTP 152

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 26/46 (56%), Positives = 31/46 (67%), Gaps = 9/46 (19%)

Query: 139 AIFLTLSVPC----LH-----FRDLKPANILLDEHGHVRISDLGLA 175
           A+F    + C    LH     +RDLKP NILLD+HGH+RISDLGLA
Sbjct: 104 AVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 19/72 (26%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K ++R    LL+ V   H+         I        +H RDLKPAN+L+   G ++I+D
Sbjct: 102 KSYMR---MLLKGVAYMHAN-------GI--------MH-RDLKPANLLISADGVLKIAD 142

Query: 172 LGLACDFSKKKP 183
            GLA  FS+++P
Sbjct: 143 FGLARLFSEEEP 154

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 19/72 (26%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           KC+++   QLLE +   HS         I        LH RD+K +NIL++  G ++++D
Sbjct: 103 KCYMK---QLLEGLQYLHSN-------GI--------LH-RDIKGSNILINNDGVLKLAD 143

Query: 172 LGLACDFSKKKP 183
            GLA  ++K+  
Sbjct: 144 FGLARPYTKRNS 155

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 9/53 (16%)

Query: 139 AIFLTLSVPC----LH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKK 182
           A F T  +      LH     +RDLKP N+LLD  G+VRISDLGLA +    +
Sbjct: 99  ACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQ 151

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 148 CLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESD 190
            +H RD+KP NIL+D  GH++++D GL    +K K      +D
Sbjct: 122 FIH-RDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLND 163

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 14/79 (17%)

Query: 98  ISRSKINRYHKKLRKCFI-RRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKP 156
           I + K  R  K + + FI R   QLL  ++ CH+  +    +          LH RDLKP
Sbjct: 92  IQKCKKER--KYIEEEFIWRILTQLLLALYECHNRSDPGNTV----------LH-RDLKP 138

Query: 157 ANILLDEHGHVRISDLGLA 175
           ANI LD + +V++ D GLA
Sbjct: 139 ANIFLDANNNVKLGDFGLA 157

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSKKKP 183
           RD+K ANILL   G V++ D GL+   S  K 
Sbjct: 122 RDIKAANILLTSDGEVKLIDFGLSAQLSDTKA 153

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 20/25 (80%), Positives = 23/25 (92%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLA 175
           +RDLKP NILLD+ GH+RISDLGLA
Sbjct: 125 YRDLKPENILLDDRGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 20/25 (80%), Positives = 24/25 (96%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLA 175
           +RDLKP NILLD++GH+RISDLGLA
Sbjct: 125 YRDLKPENILLDDYGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 8/48 (16%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGL---ACDFSKK 181
           L L++  LH     +RDLKP NILLDE GH++++D GL   + D  KK
Sbjct: 107 LALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK 154

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDF 178
           LH RDLKP N+L+   G ++++D GLA  F
Sbjct: 124 LH-RDLKPNNLLIASDGVLKLADFGLARSF 152

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 26/83 (31%)

Query: 103 INRYHKKLRKCFI-RRTV-----QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKP 156
           I ++H++ ++  I    V     Q+L  VH  HS                  LH RDLKP
Sbjct: 93  IIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNW---------------VLH-RDLKP 136

Query: 157 ANILL----DEHGHVRISDLGLA 175
           ANIL+     E G V+I DLGLA
Sbjct: 137 ANILVMGEGPERGVVKIGDLGLA 159

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 19/68 (27%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K  +    QLL  +  CHS  ++              LH RDLKP NIL++  G ++++D
Sbjct: 101 KSIMY---QLLRGLAYCHS--HR-------------ILH-RDLKPQNILINRDGVLKLAD 141

Query: 172 LGLACDFS 179
            GLA  F 
Sbjct: 142 FGLARAFG 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 23/112 (20%)

Query: 74  LYKVTSEPNSHYIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
           LY V  + N  Y++     G   KD + +    +  +      +    Q+LE +   HS 
Sbjct: 56  LYGVFEDENHLYLVMEYCEGGSLKDLL-KENEGKLSEDEILRILL---QILEGLEYLHS- 110

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-HGHVRISDLGLACDFSKKK 182
              N +I           H RDLKP NILLD  +G V+++D GL+   +  K
Sbjct: 111 ---NGII-----------H-RDLKPENILLDSDNGKVKLADFGLSKLLTSDK 147

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 4/31 (12%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKK 181
           +RDLKP N+LLD  G+++I+D G    F+K+
Sbjct: 124 YRDLKPENLLLDSDGYIKITDFG----FAKR 150

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 9/53 (16%)

Query: 140 IFLTLSVPC----LH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKKP 183
           I  +  + C    LH     +RD+KP N+LLD+ G+ R+SDLGLA +    K 
Sbjct: 98  IHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT 150

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
           RD+KP NIL+D  GH+++SD GL+  F K+   A 
Sbjct: 125 RDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAY 159

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 145 SVPCLHFRDLKPANILLDEHGHVRISDLGLACD 177
           S   +H RDL   N L+ E+  V+ISD GL+ D
Sbjct: 120 SKNFIH-RDLAARNCLVGENLVVKISDFGLSRD 151

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 145 SVPCLHFRDLKPANILLDEHGHVRISDLGLACD 177
           S   +H RDL   N L+ E+  V+ISD GL+ D
Sbjct: 121 SKNFIH-RDLAARNCLVGENLVVKISDFGLSRD 152

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILH 194
           RDLKP NILLD+  H++I+D G A          S + D    
Sbjct: 126 RDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNI 168

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSK 180
           RD+KP N+LLD  GH+++SD GL     K
Sbjct: 125 RDIKPDNLLLDAKGHIKLSDFGLCTGLKK 153

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 31/131 (23%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKK----------PHAS 186
           L  ++  LH     +RDLKP NILLD  GH+ + D GL C  + K           P   
Sbjct: 102 LLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGL-CKLNMKDDDKTNTFCGTPEYL 160

Query: 187 VESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPE---------LIFMD 237
                + HGY K         W T    L+     L P   ++  E         L F D
Sbjct: 161 APELLLGHGYTK------AVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPD 214

Query: 238 QIEEVSQDLIT 248
             +  ++DL+ 
Sbjct: 215 GFDRDAKDLLI 225

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDF 178
           LT ++  +H      RD+KP NIL+D  GH++++D GL   F
Sbjct: 110 LTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF 151

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 5/38 (13%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGL 174
           ++L++  LH     +RDLKP NILLD  GHV+++D GL
Sbjct: 109 ISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGL 146

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 5/42 (11%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDF 178
           + L++  LH     +RD+K  NILLD  GHV ++D GL+ +F
Sbjct: 114 IVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEF 155

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 151 FRDLKPANILLDEHGHVRISDLGL 174
           +RDLKP NILLD  GHV ++D GL
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 4/33 (12%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKP 183
           +RDLKP N+LLD  GHV+++D G    F+KK P
Sbjct: 141 YRDLKPENLLLDNKGHVKVTDFG----FAKKVP 169

Length = 329

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 2/31 (6%)

Query: 145 SVPCLHF--RDLKPANILLDEHGHVRISDLG 173
           SV  L +  RD+KP N+LLD++GH+R++D G
Sbjct: 117 SVHQLGYVHRDIKPDNVLLDKNGHIRLADFG 147

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 16/56 (28%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLA 175
           QLL+ +  CHS                  LH RDLKP N+L++  G ++++D GLA
Sbjct: 106 QLLQGLAFCHSH---------------GILH-RDLKPENLLINTEGVLKLADFGLA 145

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+K ANIL+D  G V+++D G A
Sbjct: 125 RDIKGANILVDSDGVVKLADFGCA 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 15/25 (60%), Positives = 21/25 (84%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLA 175
           +RDLKP NILLD+ GH++++D G A
Sbjct: 124 YRDLKPENILLDKEGHIKLTDFGFA 148

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           L L++  LH      RD+KP NI L  +G V++ D G++
Sbjct: 112 LCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGIS 150

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP 183
           LH RD+K ANIL+D  G ++I+D GLA  +    P
Sbjct: 137 LH-RDIKAANILIDNQGILKIADFGLARPYDGPPP 170

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 191 CILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSK---PELIFMDQIE-EVSQDL 246
            I  G++ K G     +W+ RY  LF   L  + +S +S       I +   +     D 
Sbjct: 1   VIKEGWLLKKGSGGRKSWKKRYFVLFDGVLLYYKDSKKSSSRPKGSIPLSGCQVTKVPDS 60

Query: 247 ITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHK 298
              K + C +++       +L               E   KEW  ++RSA +
Sbjct: 61  EDGKRKNCFEIRTGDRETFLLQAE-----------SEEERKEWVKAIRSAIR 101

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           L L++  LH     +RDLKP NILLD  GH+ + D GL+
Sbjct: 105 LVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLS 143

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 12/24 (50%), Positives = 21/24 (87%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+KP N+L+D+ GH++++D GL+
Sbjct: 121 RDIKPENLLIDQTGHLKLTDFGLS 144

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 149 LH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKKP 183
           LH     +RDLKP NILL E GH+ +SD  L+     + P
Sbjct: 119 LHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPP 158

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RDLKP N L+D  GH++++D GL+
Sbjct: 125 RDLKPENFLIDASGHIKLTDFGLS 148

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 145 SVPCLHFRDLKPANILLDEHGHVRISDLGLA 175
           S   +H RDL   N L+ E+  V+ISD GL+
Sbjct: 120 SKNFVH-RDLAARNCLVTENLVVKISDFGLS 149

Length = 258

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKK 182
           LH RD+K ANIL+ + G ++++D GLA  FS  K
Sbjct: 141 LH-RDMKAANILITKDGILKLADFGLARAFSLSK 173

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 15/27 (55%), Positives = 22/27 (81%), Gaps = 1/27 (3%)

Query: 148 CLHFRDLKPANILLDEHGHVRISDLGL 174
            +H RDLKP NIL+D +GH++++D GL
Sbjct: 114 IIH-RDLKPDNILIDSNGHLKLTDFGL 139

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 17/62 (27%)

Query: 115 IRRTV-QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLG 173
           +R  + QLL+ +  CHS  +               +H RD+KP NIL+ E G +++ D G
Sbjct: 102 VRSYIWQLLQAIAYCHS--HN-------------IIH-RDIKPENILVSESGVLKLCDFG 145

Query: 174 LA 175
            A
Sbjct: 146 FA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)

Query: 148 CLHFRDLKPANILLDEHGHVRISDLGLA 175
            +H RDLKP+NIL++ +  ++I D GLA
Sbjct: 124 VIH-RDLKPSNILVNSNCDLKICDFGLA 150

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 16/59 (27%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDF 178
           QLL+ +  CHS                  LH RDLKP N+L++  G ++++D GLA  F
Sbjct: 108 QLLQGLAFCHSH---------------RVLH-RDLKPQNLLINTEGAIKLADFGLARAF 150

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 15/27 (55%), Positives = 21/27 (77%), Gaps = 1/27 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLA 175
           +H RDLKP+NILL+    V+++D GLA
Sbjct: 129 IH-RDLKPSNILLNSDCRVKLADFGLA 154

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 151 FRDLKPANILLDEHGHVRISDLGL 174
           +RDLKP NILLD  GHV ++D GL
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 16/60 (26%)

Query: 116 RRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLA 175
           +   Q L+ V+ CH   N              C+H RD+KP NIL+ + G +++ D G A
Sbjct: 104 KIIWQTLQAVNFCH-KHN--------------CIH-RDVKPENILITKQGQIKLCDFGFA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 145 SVPCLHFRDLKPANILLDEHGHVRISDLGLA 175
           S   +H RDL   N L+ E   V+ISD GL+
Sbjct: 123 SKKFVH-RDLAARNCLVGEDLVVKISDFGLS 152

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RDLKP NIL+   G V+I+D GLA
Sbjct: 131 RDLKPQNILVTSDGQVKIADFGLA 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 12/24 (50%), Positives = 21/24 (87%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+KP+NILLD +G++++ D G++
Sbjct: 132 RDVKPSNILLDRNGNIKLCDFGIS 155

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 28/93 (30%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACD----FSKKK-----PH------ASVESDCILHGY 196
           RD+K ANILL E G V+++D G++       +K+K     P+      A+VE      GY
Sbjct: 125 RDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERK---GGY 181

Query: 197 -----IKKLGGPFVSAWQTRYAKLFPNRLELHP 224
                I  LG   ++A +   A+L P   +LHP
Sbjct: 182 DGKCDIWALG---ITAIE--LAELQPPMFDLHP 209

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 5/42 (11%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDF 178
           LTL++  +H      RD+KP NIL+D  GH++++D GL   F
Sbjct: 110 LTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGF 151

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 151 FRDLKPANILLDEHGHVRISDLGL 174
           +RDLKP NILLD  GHV ++D GL
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 121 LLEPVHTCHS-ALNKNPLIAIFLTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGL 174
           L+  + +CH   L +    A  +   +  LH     +RDLK  NILLD  GH++I+D G+
Sbjct: 83  LMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSK 180
           RD+KP N+LLD  GHV++SD GL     K
Sbjct: 125 RDIKPDNLLLDAKGHVKLSDFGLCTGLKK 153

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSK 180
           RD+KP N+LLD  GHV++SD GL     K
Sbjct: 125 RDIKPDNLLLDSKGHVKLSDFGLCTGLKK 153

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+K  NILL E G V+I+D G++
Sbjct: 126 RDIKAGNILLGEDGSVKIADFGVS 149

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 13/25 (52%), Positives = 20/25 (80%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLA 175
           +RDLK  N+LLD+ GH++I+D G+ 
Sbjct: 119 YRDLKLDNVLLDKDGHIKIADFGMC 143

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 17/31 (54%), Positives = 24/31 (77%), Gaps = 2/31 (6%)

Query: 145 SVPCLHF--RDLKPANILLDEHGHVRISDLG 173
           SV  LH+  RD+KP NIL+D +GH+R++D G
Sbjct: 117 SVHQLHYVHRDIKPDNILMDMNGHIRLADFG 147

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 148 CLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPH 184
            +H RD+K  NILL + G V+++D G A   +K+K  
Sbjct: 137 VIH-RDIKSDNILLSKDGSVKLADFGFAAQLTKEKSK 172

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDF 178
           LT +V  +H      RD+KP NIL+D  GH++++D GL   F
Sbjct: 110 LTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF 151

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 14/24 (58%), Positives = 18/24 (75%)

Query: 151 FRDLKPANILLDEHGHVRISDLGL 174
           +RDLK  N+LLD  G V+I+D GL
Sbjct: 124 YRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 15/24 (62%), Positives = 19/24 (79%)

Query: 151 FRDLKPANILLDEHGHVRISDLGL 174
           +RDLKP NILLD  GH+ ++D GL
Sbjct: 119 YRDLKPENILLDSQGHIVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 2/31 (6%)

Query: 145 SVPCLHF--RDLKPANILLDEHGHVRISDLG 173
           S+  LH+  RD+KP N+LLD +GH+R++D G
Sbjct: 117 SIHQLHYVHRDIKPDNVLLDMNGHIRLADFG 147

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 151 FRDLKPANILLDEHGHVRISDLGL 174
           +RDLK  N+LLD  GH++I+D G+
Sbjct: 119 YRDLKLDNVLLDSEGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKK 182
           L L++  +H      RD+KP N+L+D  GH++++D G A   +  K
Sbjct: 111 LVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANK 156

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 192 ILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKP----ELIFMDQIE-EVSQDL 246
           I  G++ K  G    +W+ RY  LF + L  +      K       I +       + D 
Sbjct: 2   IKEGWLYKKSGGGKKSWKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLSGCTVREAPDP 61

Query: 247 ITVKGEQCVQLKLTRDTRIVL 267
            + K   C ++K +    ++L
Sbjct: 62  DSSKKPHCFEIKTSDRKTLLL 82

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 5/32 (15%)

Query: 149 LHF-----RDLKPANILLDEHGHVRISDLGLA 175
           LH      RD+K  NILL+E G  +++D G++
Sbjct: 115 LHSNKKIHRDIKAGNILLNEEGQAKLADFGVS 146

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 114 FIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLG 173
           F+RR  +    V   ++A     ++ IF  L    + +RDLKP N+LLD+ G ++++D G
Sbjct: 121 FLRRNKRFPNDVGCFYAA----QIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFG 176

Query: 174 LA 175
            A
Sbjct: 177 FA 178

Length = 340

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 4/31 (12%)

Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKK 181
           +RDLKP N+LLD +G+V++ D G    F+KK
Sbjct: 116 YRDLKPENLLLDSNGYVKLVDFG----FAKK 142

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 14/33 (42%), Positives = 25/33 (75%), Gaps = 3/33 (9%)

Query: 143 TLSVPCLHFRDLKPANILLDEHGHVRISDLGLA 175
            LSV  +H RD+KP+N+L++ +G V++ D G++
Sbjct: 122 KLSV--IH-RDVKPSNVLINRNGQVKLCDFGIS 151

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 5/38 (13%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGL 174
           +TL++  LH     +RDLK  NILLD  GH +++D G+
Sbjct: 105 VTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
KOG0598|consensus	357		100.0
KOG0615|consensus	475		100.0
KOG0581|consensus	364		100.0
KOG0616|consensus	355		100.0
KOG0694|consensus	694		100.0
KOG0595|consensus	429		100.0
KOG0591|consensus	375		100.0
KOG0575|consensus	592		100.0
KOG0593|consensus	396		100.0
KOG0600|consensus	560		100.0
KOG0659|consensus	318		100.0
KOG0583|consensus	370		100.0
KOG0597|consensus	808		100.0
KOG0690|consensus	516		100.0
KOG0592|consensus	604		100.0
KOG0588|consensus	786		100.0
KOG0610|consensus	459		100.0
KOG0611|consensus	668		100.0
KOG0663|consensus	419		100.0
KOG0605|consensus	550		100.0
KOG0578|consensus	550		100.0
KOG0585|consensus	576		100.0
KOG0661|consensus	538		100.0
KOG0660|consensus	359		100.0
KOG0033|consensus	355		100.0
KOG0582|consensus	516		100.0
KOG0197|consensus	468		100.0
KOG0580|consensus	281		100.0
KOG0594|consensus	323		99.98
KOG0192|consensus	362		99.98
KOG0032|consensus	382		99.98
KOG0198|consensus	313		99.97
KOG0589|consensus	426		99.97
KOG0201|consensus	467		99.97
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.97
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.97
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.97
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.97
KOG0586|consensus	596		99.97
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.97
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.97
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.97
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.97
KOG4717|consensus	864		99.97
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.97
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.97
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.97
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.97
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.97
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.97
KOG1989|consensus	738		99.97
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.97
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.97
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.97
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.97
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.97
KOG0696|consensus	683		99.97
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.97
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.97
KOG4236|consensus	888		99.97
KOG0658|consensus	364		99.96
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.96
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.96
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.96
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.96
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.96
PTZ00267	478	NIMA-related protein kinase; Provisional	99.96
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.96
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.96
KOG1026|consensus	774		99.96
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.96
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.96
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.96
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.96
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.96
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.96
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.96
KOG0612|consensus	1317		99.96
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.96
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.96
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.96
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.96
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.96
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.96
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.96
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.96
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.96
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.96
KOG0577|consensus	948		99.96
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.96
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.96
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.96
KOG0662|consensus	292		99.96
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.96
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.96
KOG0599|consensus	411		99.96
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.96
PHA03212	391	serine/threonine kinase US3; Provisional	99.96
KOG0604|consensus	400		99.96
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.96
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.96
KOG0584|consensus	632		99.96
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.96
KOG0986|consensus	591		99.96
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.96
PTZ00283	496	serine/threonine protein kinase; Provisional	99.96
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.96
PHA02988	283	hypothetical protein; Provisional	99.96
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.96
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.96
KOG0608|consensus	1034		99.96
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.96
PTZ00036	440	glycogen synthase kinase; Provisional	99.96
KOG0695|consensus	593		99.95
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.95
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.95
KOG1187|consensus	361		99.95
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.95
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.95
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.95
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.95
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.95
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.95
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.95
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.95
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.95
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.95
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.95
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.95
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.95
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.95
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.95
KOG0193|consensus	678		99.95
KOG0614|consensus	732		99.95
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.95
KOG0196|consensus	996		99.95
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.95
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.95
PHA03211	461	serine/threonine kinase US3; Provisional	99.95
KOG0667|consensus	586		99.95
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.95
KOG0574|consensus	502		99.95
PHA03209	357	serine/threonine kinase US3; Provisional	99.95
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.95
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.95
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.95
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.95
KOG4721|consensus	904		99.95
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.95
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.95
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.94
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.94
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.94
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.94
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.94
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.94
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.94
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.94
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.94
PHA03207	392	serine/threonine kinase US3; Provisional	99.94
KOG0579|consensus	1187		99.94
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.94
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.94
KOG4250|consensus	732		99.94
KOG0666|consensus	438		99.94
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.94
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.94
PLN00009	294	cyclin-dependent kinase A; Provisional	99.94
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.94
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.94
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.94
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.94
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.94
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.94
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.94
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.94
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.94
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.94
PHA03210	501	serine/threonine kinase US3; Provisional	99.94
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.94
KOG0596|consensus	677		99.94
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.94
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.94
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.94
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.94
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.94
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.94
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.94
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.94
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.94
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.94
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.94
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.94
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.94
KOG2052|consensus	513		99.94
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.94
KOG1151|consensus	775		99.94
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.94
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.94
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.94
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.94
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.94
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.94
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.94
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.94
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.94
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.94
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.94
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.94
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.94
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.94
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.94
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.94
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.94
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.94
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.94
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.94
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.94
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.94
KOG4645|consensus	1509		99.94
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.94
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.94
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.94
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.94
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.94
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.94
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.94
KOG0607|consensus	463		99.94
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.94
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.94
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.94
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.94
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.94
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.93
KOG0194|consensus	474		99.93
KOG0669|consensus	376		99.93
KOG1035|consensus	1351		99.93
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.93
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.93
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.93
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.93
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.93
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.93
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.93
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.93
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.93
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.93
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.93
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.93
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.93
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.93
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.93
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.93
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.93
PTZ00284	467	protein kinase; Provisional	99.93
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.93
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.93
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.93
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.93
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.93
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.93
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.93
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.93
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.93
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.93
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.93
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.93
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.93
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.93
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.93
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.93
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.93
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.93
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.93
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.93
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.93
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.93
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.93
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.93
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.93
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.93
KOG4279|consensus	1226		99.93
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.93
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.93
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.93
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.93
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.93
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.93
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.93
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.93
KOG0983|consensus	391		99.93
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.93
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.93
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.93
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.93
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.93
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.93
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.93
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.93
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.93
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.93
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.93
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.93
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.93
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.93
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.93
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.93
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.93
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.93
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.93
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.93
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.93
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.93
KOG1095|consensus	1025		99.93
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.93
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.93
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.93
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.93
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.93
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.93
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.93
KOG1094|consensus	807		99.93
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.92
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.92
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.92
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.92
KOG4257|consensus	974		99.92
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.92
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.92
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.92
KOG2345|consensus	302		99.92
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.92
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.92
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.92
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.92
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.92
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.92
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.92
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.92
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.92
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.92
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.92
KOG4278|consensus	1157		99.92
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.92
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.92
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.92
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.92
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.92
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.92
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.92
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.92
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.92
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.92
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.92
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.92
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.92
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.92
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.92
KOG0984|consensus	282		99.92
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.92
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.92
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.92
KOG0603|consensus	612		99.91
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.91
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.91
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.91
KOG0587|consensus	953		99.91
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.91
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.91
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.91
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.91
KOG1006|consensus	361		99.91
KOG0664|consensus	449		99.91
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.91
PHA02882	294	putative serine/threonine kinase; Provisional	99.9
KOG0665|consensus	369		99.9
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.9
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.89
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.89
KOG1152|consensus	772		99.89
KOG0199|consensus	1039		99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PRK09188	365	serine/threonine protein kinase; Provisional	99.88
KOG0576|consensus	829		99.88
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.88
KOG3653|consensus	534		99.88
KOG1025|consensus	1177		99.87
KOG0671|consensus	415		99.87
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.85
KOG1027|consensus	903		99.85
KOG0200|consensus	609		99.85
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.85
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.85
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.84
KOG0668|consensus	338		99.83
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.83
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.83
KOG1345|consensus	378		99.83
KOG1164|consensus	322		99.76
KOG0670|consensus	752		99.75
PRK10345	210	hypothetical protein; Provisional	99.74
KOG1163|consensus	341		99.74
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.73
PRK12274	218	serine/threonine protein kinase; Provisional	99.72
PLN00181	793	protein SPA1-RELATED; Provisional	99.7
smart00090	237	RIO RIO-like kinase.	99.7
KOG1165|consensus	449		99.7
KOG1167|consensus	418		99.69
PRK14879	211	serine/threonine protein kinase; Provisional	99.69
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.69
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.68
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.68
KOG0603|consensus	612		99.67
KOG0590|consensus	601		99.64
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.62
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.62
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.59
KOG1290|consensus	590		99.56
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.56
KOG4158|consensus	598		99.55
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.47
KOG0606|consensus	1205		99.44
KOG1024|consensus	563		99.41
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.38
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.35
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.35
KOG1166|consensus	974		99.32
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.27
KOG1240|consensus	1431		99.26
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.21
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	99.16
KOG0590|consensus	601		99.02
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.02
KOG1023|consensus	484		99.0
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.99
KOG0601|consensus	524		98.96
KOG1033|consensus	516		98.95
KOG0195|consensus	448		98.94
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.93
KOG3087|consensus	229		98.93
KOG1243|consensus	690		98.9
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.79
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.63
KOG1266|consensus	458		98.6
KOG3741|consensus	655		98.58
KOG0601|consensus	524		98.54
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.33
KOG0606|consensus	1205		98.3
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.19
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.18
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.16
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.16
KOG1235|consensus	538		98.01
PF01636	239	APH: Phosphotransferase enzyme family This family	97.94
PRK09902	216	hypothetical protein; Provisional	97.94
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.82
PLN02876	822	acyl-CoA dehydrogenase	97.69
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.69
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.67
COG4248	637	Uncharacterized protein with protein kinase and he	97.66
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.64
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.59
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.53
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.5
PLN02236	344	choline kinase	97.36
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	97.26
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	97.16
KOG0576|consensus	829		97.13
PRK10593	297	hypothetical protein; Provisional	96.94
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	96.72
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	96.68
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	96.64
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	96.59
PRK09550	401	mtnK methylthioribose kinase; Reviewed	96.54
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	96.44
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	96.09
KOG2137|consensus	700		95.77
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	95.39
KOG2268|consensus	465		95.26
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	95.11
PRK11768	325	serine/threonine protein kinase; Provisional	95.09
PLN02756	418	S-methyl-5-thioribose kinase	94.58
PTZ00296	442	choline kinase; Provisional	94.52
KOG2270|consensus	520		94.48
PRK06148	1013	hypothetical protein; Provisional	94.44
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	94.12
PRK05231	319	homoserine kinase; Provisional	93.99
PTZ00384	383	choline kinase; Provisional	93.98
PRK10271	188	thiK thiamine kinase; Provisional	93.97
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	93.83
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	93.7
KOG1826|consensus	2724		93.62
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	93.38
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	92.19
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	92.1
PHA03111	444	Ser/Thr kinase; Provisional	91.8

>KOG0598|consensus

Probab=100.00  E-value=3.3e-41  Score=303.75  Aligned_cols=231  Identities=18%  Similarity=0.250  Sum_probs=192.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.|+|+.++.++|++.+|+|++++... +....++...|..||..++||.|        |+++..|+++..+|+|+||
T Consensus        35 kG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFi--------v~l~ysFQt~~kLylVld~  106 (357)
T KOG0598|consen   35 KGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFI--------VKLIYSFQTEEKLYLVLDY  106 (357)
T ss_pred             ccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcE--------eeeEEecccCCeEEEEEec
Confidence            68999999999999999999999998876 44455678889999999999999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +.||.-+.+..+.+.+.+....+++   .+|+.||.|||+++                ||||||||+|||+|.+|+++|+
T Consensus       107 ~~GGeLf~hL~~eg~F~E~~arfYl---aEi~lAL~~LH~~g----------------IiyRDlKPENILLd~~GHi~Lt  167 (357)
T KOG0598|consen  107 LNGGELFYHLQREGRFSEDRARFYL---AEIVLALGYLHSKG----------------IIYRDLKPENILLDEQGHIKLT  167 (357)
T ss_pred             cCCccHHHHHHhcCCcchhHHHHHH---HHHHHHHHHHHhCC----------------eeeccCCHHHeeecCCCcEEEe
Confidence            9999444444445577666666655   49999999999999                9999999999999999999999


Q ss_pred             ecccccccCCC--CCCccccCcccccccc-ccccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccccc
Q psy6542         171 DLGLACDFSKK--KPHASVESDCILHGYI-KKLGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQ  244 (334)
Q Consensus       171 DFGla~~~~~~--~~~~~~~t~~~~~~~v-~~~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  244 (334)
                      |||||+.....  .+.++|||+.||+||+ ...+|..+.|||   ++++.|..+.+||.+.+.....+.+...... .++
T Consensus       168 DFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~-~~p  246 (357)
T KOG0598|consen  168 DFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLP-LPP  246 (357)
T ss_pred             ccccchhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCC-CCC
Confidence            99999955444  4677899999999998 467899999999   4455556678899999877677777776643 333


Q ss_pred             ccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         245 DLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       245 ~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ..++..+.+.+...+.++|..|++.+
T Consensus       247 ~~ls~~ardll~~LL~rdp~~RLg~~  272 (357)
T KOG0598|consen  247 GYLSEEARDLLKKLLKRDPRQRLGGP  272 (357)
T ss_pred             ccCCHHHHHHHHHHhccCHHHhcCCC
Confidence            54555677888888899999999743

>KOG0615|consensus

Probab=100.00  E-value=4.7e-39  Score=292.50  Aligned_cols=228  Identities=19%  Similarity=0.157  Sum_probs=173.1

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcch-----HHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHES-----RVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~-----~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      |....|.+|..+.||+.||||++++.....     ......++|++||++|+||||        |+++++|+..+..|||
T Consensus       183 Gafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~I--------V~~~d~f~~~ds~YmV  254 (475)
T KOG0615|consen  183 GAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNI--------VRIKDFFEVPDSSYMV  254 (475)
T ss_pred             CceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCE--------EEEeeeeecCCceEEE
Confidence            445699999999999999999999876521     122245799999999999999        9999999999999999


Q ss_pred             EEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-
Q psy6542          88 GVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-  164 (334)
Q Consensus        88 mEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-  164 (334)
                      |||++||  ++++..++  ...+...   ..++.|++.|+.|||++|                |+||||||+|||++.+ 
T Consensus       255 lE~v~GGeLfd~vv~nk--~l~ed~~---K~~f~Qll~avkYLH~~G----------------I~HRDiKPeNILl~~~~  313 (475)
T KOG0615|consen  255 LEYVEGGELFDKVVANK--YLREDLG---KLLFKQLLTAVKYLHSQG----------------IIHRDIKPENILLSNDA  313 (475)
T ss_pred             EEEecCccHHHHHHhcc--ccccchh---HHHHHHHHHHHHHHHHcC----------------cccccCCcceEEeccCC
Confidence            9999999  66666654  3333233   344569999999999999                9999999999999877 


Q ss_pred             --CCEEEEecccccccCCCC-CCccccCcccccccccc-cc---CC-cceeeh--hHHHHHcCCCCCCCCCCCCC-cccc
Q psy6542         165 --GHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-LG---GP-FVSAWQ--TRYAKLFPNRLELHPESGQS-KPEL  233 (334)
Q Consensus       165 --~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~---~~-~~~~w~--~~~~~l~~~~~~~~~~~~~~-~~~~  233 (334)
                        ..+||+|||+|+..+.+. ..+.|||+.|.+|||.. .+   |+ ..|.||  |+.+....+.+||.....+. ..+.
T Consensus       314 e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQ  393 (475)
T KOG0615|consen  314 EDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQ  393 (475)
T ss_pred             cceEEEecccchhhccccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHH
Confidence              779999999999886554 57789999999999943 22   44 567788  66666677888998887665 5566


Q ss_pred             hhcccccccccccccH---hHHHHHHHhhccCchhhcCCC
Q psy6542         234 IFMDQIEEVSQDLITV---KGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       234 i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      |..+.+--.+ ..|.-   .+...|...+.-||..|.+..
T Consensus       394 I~~G~y~f~p-~~w~~Iseea~dlI~~mL~VdP~~R~s~~  432 (475)
T KOG0615|consen  394 ILKGRYAFGP-LQWDRISEEALDLINWMLVVDPENRPSAD  432 (475)
T ss_pred             HhcCcccccC-hhhhhhhHHHHHHHHHhhEeCcccCcCHH
Confidence            6666554332 22211   344455555556777666644

>KOG0581|consensus

Probab=100.00  E-value=3.8e-38  Score=284.07  Aligned_cols=184  Identities=16%  Similarity=0.155  Sum_probs=155.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCe-EEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNS-HYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~-~~ivmEy   90 (334)
                      .++.+-||++.|+.|++.+|+|.+.. ..+....+++.+|++|++.++||+|        |.+|++|..++. ++|+|||
T Consensus        89 ~G~gG~V~kv~Hk~t~~i~AlK~I~~-~~~~~~~~Qi~rEl~il~~~~spyI--------V~~ygaF~~~~~~isI~mEY  159 (364)
T KOG0581|consen   89 SGNGGTVYKVRHKPTGKIYALKVILL-NIDPALQKQILRELEILRSCQSPYI--------VGFYGAFYSNGEEISICMEY  159 (364)
T ss_pred             cCCCcEEEEEEEcCCCeEEEEEeecc-cCCHHHHHHHHHHHHHHhhCCCCCe--------eeEeEEEEeCCceEEeehhh
Confidence            56788999999999999999999943 3456678889999999999999999        999999999985 9999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+|| ++.+.... +..   .+..+..++.|+++||.|||+ ++                ||||||||+|||++++|.||
T Consensus       160 MDgGSLd~~~k~~-g~i---~E~~L~~ia~~VL~GL~YLh~~~~----------------IIHRDIKPsNlLvNskGeVK  219 (364)
T KOG0581|consen  160 MDGGSLDDILKRV-GRI---PEPVLGKIARAVLRGLSYLHEERK----------------IIHRDIKPSNLLVNSKGEVK  219 (364)
T ss_pred             cCCCCHHHHHhhc-CCC---CHHHHHHHHHHHHHHHHHHhhccC----------------eeeccCCHHHeeeccCCCEE
Confidence            9999 77664532 233   556667778899999999996 77                99999999999999999999


Q ss_pred             EEecccccccCCCCCCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKPHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||||.++.+..+...++.||..||+||-..  .++..+|+|+   +++|+ +.+++|+...
T Consensus       220 icDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~-a~GrfP~~~~  280 (364)
T KOG0581|consen  220 ICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLEL-AIGRFPYPPP  280 (364)
T ss_pred             eccccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHH-hhCCCCCCCc
Confidence            9999999999888889999999999999643  3345688888   66666 5566676543

>KOG0616|consensus

Probab=100.00  E-value=2.5e-38  Score=277.17  Aligned_cols=228  Identities=18%  Similarity=0.214  Sum_probs=190.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      -+|++||.+++++.+|.-+|+|++.+... .-.-.++..+|..+|+.+.||.+        +++++.+.+.+.+||||||
T Consensus        54 tGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFl--------v~l~~t~~d~~~lymvmey  125 (355)
T KOG0616|consen   54 TGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFL--------VKLYGTFKDNSNLYMVMEY  125 (355)
T ss_pred             cCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCcee--------EEEEEeeccCCeEEEEEec
Confidence            37899999999999999999999997765 32334577889999999999999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      ++||.-+...++.+++++..+.++..   ||+.||+|||+.+                |++|||||+|||+|++|.+||+
T Consensus       126 v~GGElFS~Lrk~~rF~e~~arFYAA---eivlAleylH~~~----------------iiYRDLKPENiLlD~~G~iKit  186 (355)
T KOG0616|consen  126 VPGGELFSYLRKSGRFSEPHARFYAA---EIVLALEYLHSLD----------------IIYRDLKPENLLLDQNGHIKIT  186 (355)
T ss_pred             cCCccHHHHHHhcCCCCchhHHHHHH---HHHHHHHHHHhcC----------------eeeccCChHHeeeccCCcEEEE
Confidence            99994444455566888877777665   9999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCccccCcccccccc-ccccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccccccc
Q psy6542         171 DLGLACDFSKKKPHASVESDCILHGYI-KKLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQD  245 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~t~~~~~~~v-~~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  245 (334)
                      |||+|+..... +.+.||||.|++||+ ...+|.++.|||    ++|||+ .+.+||+..+....++.|....+. +|+-
T Consensus       187 DFGFAK~v~~r-T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMl-aG~pPF~~~~~~~iY~KI~~~~v~-fP~~  263 (355)
T KOG0616|consen  187 DFGFAKRVSGR-TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEML-AGYPPFYDDNPIQIYEKILEGKVK-FPSY  263 (355)
T ss_pred             eccceEEecCc-EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHH-cCCCCCcCCChHHHHHHHHhCccc-CCcc
Confidence            99999977655 778899999999997 678899999999    555655 466799898877777777777664 5545


Q ss_pred             cccHhHHHHHHHhhccCchhhcCCC
Q psy6542         246 LITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       246 ~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +.+ ...+.+...+..|-..|+++.
T Consensus       264 fs~-~~kdLl~~LL~vD~t~R~gnl  287 (355)
T KOG0616|consen  264 FSS-DAKDLLKKLLQVDLTKRFGNL  287 (355)
T ss_pred             cCH-HHHHHHHHHHhhhhHhhhcCc
Confidence            553 345556666678999998876

>KOG0694|consensus

Probab=100.00  E-value=7.9e-38  Score=300.15  Aligned_cols=228  Identities=16%  Similarity=0.185  Sum_probs=190.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      |||+++|++|..+.+++.+|||++++... .+........|.+|+.... ||.+        +++|..|++.+++|+|||
T Consensus       378 kGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL--------~~L~~~fQT~~~l~fvme  449 (694)
T KOG0694|consen  378 RGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFL--------VNLFSCFQTKEHLFFVME  449 (694)
T ss_pred             cCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeE--------eecccccccCCeEEEEEE
Confidence            79999999999999999999999999876 4445567888999998876 9999        999999999999999999


Q ss_pred             ccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          90 RQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        90 y~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+.||+ .+.-.....+++....++   +.+++.||+|||+++                ||+||||.+|||+|.+|++||
T Consensus       450 y~~Ggd-m~~~~~~~~F~e~rarfy---aAev~l~L~fLH~~~----------------IIYRDlKLdNiLLD~eGh~ki  509 (694)
T KOG0694|consen  450 YVAGGD-LMHHIHTDVFSEPRARFY---AAEVVLGLQFLHENG----------------IIYRDLKLDNLLLDTEGHVKI  509 (694)
T ss_pred             ecCCCc-EEEEEecccccHHHHHHH---HHHHHHHHHHHHhcC----------------ceeeecchhheEEcccCcEEe
Confidence            999995 322223345655555444   459999999999999                999999999999999999999


Q ss_pred             Eeccccccc--CCCCCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDF--SKKKPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~--~~~~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||+|+..  ....+.++||||.|++||++ ...|+.+.|||    ++|+||. +..||.|++....++.|...++. .
T Consensus       510 ADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~-Gq~PF~gddEee~FdsI~~d~~~-y  587 (694)
T KOG0694|consen  510 ADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLV-GESPFPGDDEEEVFDSIVNDEVR-Y  587 (694)
T ss_pred             cccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHc-CCCCCCCCCHHHHHHHHhcCCCC-C
Confidence            999999954  33456789999999999996 45599999999    6666665 55699999999999999888775 3


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      |..++ ..+..++...+.++|..|+++.
T Consensus       588 P~~ls-~ea~~il~~ll~k~p~kRLG~~  614 (694)
T KOG0694|consen  588 PRFLS-KEAIAIMRRLLRKNPEKRLGSG  614 (694)
T ss_pred             CCccc-HHHHHHHHHHhccCcccccCCC
Confidence            43333 3567788888899999999984

>KOG0595|consensus

Probab=100.00  E-value=3.1e-37  Score=280.71  Aligned_cols=187  Identities=17%  Similarity=0.198  Sum_probs=154.0

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      -+++..-||+|+++.++..||||.+.+........+.+..|+.||+.++||||        |.++++..+++.+|+||||
T Consensus        19 G~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nI--------V~l~d~~~~~~~i~lVMEy   90 (429)
T KOG0595|consen   19 GSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNI--------VRLLDCIEDDDFIYLVMEY   90 (429)
T ss_pred             cCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcce--------eeEEEEEecCCeEEEEEEe
Confidence            46788899999999999999999999988766677788899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-----
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-----  164 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-----  164 (334)
                      |+|| +...+... +...+...+.   ++.||+.||++||+++                ||||||||+||||+..     
T Consensus        91 C~gGDLs~yi~~~-~~l~e~t~r~---Fm~QLA~alq~L~~~~----------------IiHRDLKPQNiLLs~~~~~~~  150 (429)
T KOG0595|consen   91 CNGGDLSDYIRRR-GRLPEATARH---FMQQLASALQFLHENN----------------IIHRDLKPQNILLSTTARNDT  150 (429)
T ss_pred             CCCCCHHHHHHHc-CCCCHHHHHH---HHHHHHHHHHHHHHCC----------------eeeccCCcceEEeccCCCCCC
Confidence            9988 54443332 2554444444   4459999999999999                9999999999999775     


Q ss_pred             -CCEEEEecccccccCCCC-CCccccCccccccccc--cccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 -GHVRISDLGLACDFSKKK-PHASVESDCILHGYIK--KLGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 -~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~--~~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                       -.+||+|||+|+.+.... ..+.|||+.||+|||.  ..+.-++|.|+   ++|++ ..+.+||...+
T Consensus       151 ~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~-l~g~~Pf~a~t  218 (429)
T KOG0595|consen  151 SPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQC-LTGKPPFDAET  218 (429)
T ss_pred             CceEEecccchhhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHH-HhCCCCccccC
Confidence             358999999999887665 4678999999999995  34445677777   66666 45666887555

>KOG0591|consensus

Probab=100.00  E-value=1.7e-38  Score=276.51  Aligned_cols=237  Identities=16%  Similarity=0.144  Sum_probs=186.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEE-EeecC-CeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYK-VTSEP-NSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~-~~~~~-~~~~ivmE   89 (334)
                      |+|+..||++.+..+|..||.|.+.-...+...++....|+.+|++|+||||        |++|+ .|..+ ..++||||
T Consensus        29 ~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNI--------VqYy~~~f~~~~evlnivmE  100 (375)
T KOG0591|consen   29 RGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNI--------VQYYAHSFIEDNEVLNIVME  100 (375)
T ss_pred             CCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchH--------HHHHHHhhhccchhhHHHHH
Confidence            7899999999999999999999999666677788888999999999999999        99997 55544 45999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||++| +..++.+-.......++..+|.++.|++.||..+|..-. +           .-|+||||||+||+++.+|.||
T Consensus       101 ~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~-r-----------~~VmHRDIKPaNIFl~~~gvvK  168 (375)
T KOG0591|consen  101 LCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIP-R-----------GTVMHRDIKPANIFLTANGVVK  168 (375)
T ss_pred             hhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcccc-c-----------cceeeccCcchheEEcCCCcee
Confidence            99988 766666655555556788899999999999999999220 0           1189999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCccccccccc-cccCCc-ceeeh--hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIK-KLGGPF-VSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~-~~~~~~-~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |+||||++.+..+.  .++..|||+||+||+. ..+|.+ +|+|+  |+.+.|+.-+.||+|.+.....+.|-..+.++.
T Consensus       169 LGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~  248 (375)
T KOG0591|consen  169 LGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPL  248 (375)
T ss_pred             eccchhHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCC
Confidence            99999999988876  4678999999999973 555654 55566  666666777889999986666777777777666


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLT  268 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~  268 (334)
                      |.+.........+..++..|+..|.+
T Consensus       249 p~~~YS~~l~~li~~ci~vd~~~RP~  274 (375)
T KOG0591|consen  249 PDEHYSTDLRELINMCIAVDPEQRPD  274 (375)
T ss_pred             cHHHhhhHHHHHHHHHccCCcccCCC
Confidence            64433222223344444556666654

>KOG0575|consensus

Probab=100.00  E-value=2.2e-36  Score=287.06  Aligned_cols=229  Identities=16%  Similarity=0.182  Sum_probs=186.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|++-+||.+.+..+|+.||+|++.+... .....+.+.+|++|.+.|+||||        |++|++|++.+.+|||.|+
T Consensus        28 kGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnI--------V~f~~~FEDs~nVYivLEL   99 (592)
T KOG0575|consen   28 KGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNI--------VQFYHFFEDSNNVYIVLEL   99 (592)
T ss_pred             cCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcE--------EeeeeEeecCCceEEEEEe
Confidence            57888999999999999999999998665 44456678889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+.+ +..+.+ ..+.+.|..+..+   +.||+.||.|||+++                |||||||..|++++++.+|||
T Consensus       100 C~~~sL~el~K-rrk~ltEpEary~---l~QIv~GlkYLH~~~----------------IiHRDLKLGNlfL~~~~~VKI  159 (592)
T KOG0575|consen  100 CHRGSLMELLK-RRKPLTEPEARYF---LRQIVEGLKYLHSLG----------------IIHRDLKLGNLFLNENMNVKI  159 (592)
T ss_pred             cCCccHHHHHH-hcCCCCcHHHHHH---HHHHHHHHHHHHhcC----------------ceecccchhheeecCcCcEEe
Confidence            9998 666655 3446655444444   459999999999999                999999999999999999999


Q ss_pred             EecccccccCCC--CCCccccCccccccccc-cccCC-cceeeh--hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         170 SDLGLACDFSKK--KPHASVESDCILHGYIK-KLGGP-FVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       170 ~DFGla~~~~~~--~~~~~~~t~~~~~~~v~-~~~~~-~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      +|||||+.+..+  +..+.||||-|.+|||+ ..++. .+|+|+  |+++.|..|++||...+....+..|...++. .|
T Consensus       160 gDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~-~P  238 (592)
T KOG0575|consen  160 GDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYS-MP  238 (592)
T ss_pred             cccceeeeecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcc-cc
Confidence            999999977644  45778999999999995 45555 466666  7777778889999888766666666655554 45


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...+ ..+.+.|...+.++|..|.+..
T Consensus       239 ~~ls-~~A~dLI~~lL~~~P~~Rpsl~  264 (592)
T KOG0575|consen  239 SHLS-AEAKDLIRKLLRPNPSERPSLD  264 (592)
T ss_pred             cccC-HHHHHHHHHHhcCCcccCCCHH
Confidence            4333 3677788888888888887643

>KOG0593|consensus

Probab=100.00  E-value=3.9e-37  Score=270.39  Aligned_cols=189  Identities=21%  Similarity=0.216  Sum_probs=160.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .+|-+-|++|++++||+.||||.+.....+..+++-..+|+++|++|+|+|+        |.+..+|.....+++|+|||
T Consensus        12 EGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NL--------VnLiEVFrrkrklhLVFE~~   83 (396)
T KOG0593|consen   12 EGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENL--------VNLIEVFRRKRKLHLVFEYC   83 (396)
T ss_pred             cCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchH--------HHHHHHHHhcceeEEEeeec
Confidence            4677899999999999999999999888888899999999999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +.. ++.+-+.. +..   +.+.+..+++|++.|+.|||+++                +|||||||+|||++.+|.+|||
T Consensus        84 dhTvL~eLe~~p-~G~---~~~~vk~~l~Q~l~ai~~cHk~n----------------~IHRDIKPENILit~~gvvKLC  143 (396)
T KOG0593|consen   84 DHTVLHELERYP-NGV---PSELVKKYLYQLLKAIHFCHKNN----------------CIHRDIKPENILITQNGVVKLC  143 (396)
T ss_pred             chHHHHHHHhcc-CCC---CHHHHHHHHHHHHHHhhhhhhcC----------------eecccCChhheEEecCCcEEec
Confidence            999 66554433 233   44445566779999999999999                9999999999999999999999


Q ss_pred             ecccccccCCC-C-CCccccCcccccccccc---ccCCcceeeh--hHHHHHcCCCCCCCCCCCC
Q psy6542         171 DLGLACDFSKK-K-PHASVESDCILHGYIKK---LGGPFVSAWQ--TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       171 DFGla~~~~~~-~-~~~~~~t~~~~~~~v~~---~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~  228 (334)
                      |||+|+.+... . ...+..|-+|-+||+..   .++++.|+|+  |++..|..+.+-|.|.|+.
T Consensus       144 DFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDi  208 (396)
T KOG0593|consen  144 DFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDI  208 (396)
T ss_pred             cchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchH
Confidence            99999988743 2 23456789999999853   3456677777  9998889888888888864

>KOG0600|consensus

Probab=100.00  E-value=9e-36  Score=277.07  Aligned_cols=188  Identities=21%  Similarity=0.257  Sum_probs=161.3

Q ss_pred             ceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEEEEEEccC
Q psy6542          15 KWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHYIIGVRQS   92 (334)
Q Consensus        15 ~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~ivmEy~~   92 (334)
                      ..+||+|++..||+.||+|.++....+...-....+|+.||++|+||||        +++.+...+.  ..+|+|+|||+
T Consensus       130 yg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNI--------ikL~eivt~~~~~siYlVFeYMd  201 (560)
T KOG0600|consen  130 YGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNI--------IKLEEIVTSKLSGSIYLVFEYMD  201 (560)
T ss_pred             hhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcc--------cceeeEEEecCCceEEEEEeccc
Confidence            3489999999999999999999988777777778899999999999999        9999998876  68999999999


Q ss_pred             CChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEec
Q psy6542          93 GPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDL  172 (334)
Q Consensus        93 g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DF  172 (334)
                      +++.-+..+....+.+...++++.   ||+.||+|||+++                |+|||||.+|||||++|.+||+||
T Consensus       202 hDL~GLl~~p~vkft~~qIKc~mk---QLl~Gl~~cH~~g----------------vlHRDIK~SNiLidn~G~LKiaDF  262 (560)
T KOG0600|consen  202 HDLSGLLSSPGVKFTEPQIKCYMK---QLLEGLEYCHSRG----------------VLHRDIKGSNILIDNNGVLKIADF  262 (560)
T ss_pred             chhhhhhcCCCcccChHHHHHHHH---HHHHHHHHHhhcC----------------eeeccccccceEEcCCCCEEeccc
Confidence            998777777666787777777766   9999999999999                999999999999999999999999


Q ss_pred             ccccccCCCCCC---ccccCccccccccc---cccCCcceeeh--hHHHHHcCCCCCCCCCCCCC
Q psy6542         173 GLACDFSKKKPH---ASVESDCILHGYIK---KLGGPFVSAWQ--TRYAKLFPNRLELHPESGQS  229 (334)
Q Consensus       173 Gla~~~~~~~~~---~~~~t~~~~~~~v~---~~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~~  229 (334)
                      |||+.+......   +.+-|.+|-|||++   ..+++..|.|+  |++..|+.+.+.|.|.....
T Consensus       263 GLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEve  327 (560)
T KOG0600|consen  263 GLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVE  327 (560)
T ss_pred             cceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHH
Confidence            999977666532   23348999999984   34466777788  88888898998888876543

>KOG0659|consensus

Probab=100.00  E-value=5.3e-35  Score=252.80  Aligned_cols=259  Identities=15%  Similarity=0.146  Sum_probs=189.6

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      +-..-||+|.+.+||+.||||.++.....+.......+|++.|+.++|+||        +.+.|+|...+.+.+|+||++
T Consensus        13 G~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nI--------i~LiD~F~~~~~l~lVfEfm~   84 (318)
T KOG0659|consen   13 GTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNI--------IELIDVFPHKSNLSLVFEFMP   84 (318)
T ss_pred             cceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcch--------hhhhhhccCCCceEEEEEecc
Confidence            455689999999999999999999987766667778899999999999999        999999999999999999999


Q ss_pred             CChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEec
Q psy6542          93 GPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDL  172 (334)
Q Consensus        93 g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DF  172 (334)
                      .+++.+++....-+.+..   +..|+.++++||+|||.+.                |+||||||.|+|++++|.+||+||
T Consensus        85 tdLe~vIkd~~i~l~pa~---iK~y~~m~LkGl~y~H~~~----------------IlHRDlKPnNLLis~~g~lKiADF  145 (318)
T KOG0659|consen   85 TDLEVVIKDKNIILSPAD---IKSYMLMTLKGLAYCHSKW----------------ILHRDLKPNNLLISSDGQLKIADF  145 (318)
T ss_pred             ccHHHHhcccccccCHHH---HHHHHHHHHHHHHHHHhhh----------------hhcccCCccceEEcCCCcEEeecc
Confidence            998888887766664444   4455669999999999999                999999999999999999999999


Q ss_pred             ccccccCCCCCCc--cccCcccccccc---ccccCCcceeeh--hHHHHHcCCCCCCCCCCCCCcccchhcccccccccc
Q psy6542         173 GLACDFSKKKPHA--SVESDCILHGYI---KKLGGPFVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQD  245 (334)
Q Consensus       173 Gla~~~~~~~~~~--~~~t~~~~~~~v---~~~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  245 (334)
                      |+|+.+.......  ..-|-+|-+||+   ++.+++..|+|+  |+++.|.-+.+.|.|.++..-...++..--.+ ..+
T Consensus       146 GLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP-~~~  224 (318)
T KOG0659|consen  146 GLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTP-TPD  224 (318)
T ss_pred             cchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCC-Ccc
Confidence            9999887665322  245788999997   567778889999  88888888888777877643333333222221 123


Q ss_pred             cccHhHHHHHHHhh--ccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHH
Q psy6542         246 LITVKGEQCVQLKL--TRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGS  306 (334)
Q Consensus       246 ~~~~~~~~~i~~~~--~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~  306 (334)
                      .|+.  +.++-...  ..-|...+..   .++..+..  .+.+.+.+...+|..|. +.+.|++
T Consensus       225 ~WP~--~~~lpdY~~~~~~P~~~~~~---lf~aas~d--~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  225 QWPE--MTSLPDYVKIQQFPKPPLNN---LFPAASSD--ALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             cCcc--ccccccHHHHhcCCCCcccc---ccccccHH--HHHHHHhhhccCchhcccHHHHhcc
Confidence            3322  11111100  1111111111   23333333  35577777777777777 5555543

>KOG0583|consensus

Probab=100.00  E-value=1.8e-34  Score=271.81  Aligned_cols=227  Identities=22%  Similarity=0.242  Sum_probs=172.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc---hHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE---SRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~---~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .++..+|++|.+..+|..||||++.+....   ....+.+.+|+.+++.++ ||||        +++++++.....+|||
T Consensus        27 ~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI--------~~l~ev~~t~~~~~iv   98 (370)
T KOG0583|consen   27 SGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNI--------IRLLEVFATPTKIYIV   98 (370)
T ss_pred             CCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCE--------eEEEEEEecCCeEEEE
Confidence            467889999999999999999988765221   134557778999999999 9999        9999999999999999


Q ss_pred             EEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-
Q psy6542          88 GVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-  164 (334)
Q Consensus        88 mEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-  164 (334)
                      ||||.||  ++++..  .+++.+   ..+..++.|+++|++|||+++                |+||||||+|||++.+ 
T Consensus        99 mEy~~gGdL~~~i~~--~g~l~E---~~ar~~F~Qlisav~y~H~~g----------------i~HRDLK~ENilld~~~  157 (370)
T KOG0583|consen   99 MEYCSGGDLFDYIVN--KGRLKE---DEARKYFRQLISAVAYCHSRG----------------IVHRDLKPENILLDGNE  157 (370)
T ss_pred             EEecCCccHHHHHHH--cCCCCh---HHHHHHHHHHHHHHHHHHhCC----------------EeeCCCCHHHEEecCCC
Confidence            9999998  566644  335555   334455669999999999999                9999999999999999 


Q ss_pred             CCEEEEeccccccc--CCCCCCccccCcccccccccc----ccCCcceeeh--hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         165 GHVRISDLGLACDF--SKKKPHASVESDCILHGYIKK----LGGPFVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       165 ~~vkl~DFGla~~~--~~~~~~~~~~t~~~~~~~v~~----~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                      +++||+|||++...  ......+.+||+.|++||+..    +.+..+|+|+  ++.+.|..+..||........+..+..
T Consensus       158 ~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~  237 (370)
T KOG0583|consen  158 GNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRK  237 (370)
T ss_pred             CCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhc
Confidence            99999999999988  345578899999999999943    2245788888  444555667778877665445554444


Q ss_pred             cccccccccc-ccHhHHHHHH-HhhccCchhhcCCC
Q psy6542         237 DQIEEVSQDL-ITVKGEQCVQ-LKLTRDTRIVLTNP  270 (334)
Q Consensus       237 ~~~~~~~~~~-~~~~~~~~i~-~~~~~~p~~r~~~~  270 (334)
                      ..+ .++... +  ....++. ..+..+|..|.+..
T Consensus       238 ~~~-~~p~~~~S--~~~~~Li~~mL~~~P~~R~t~~  270 (370)
T KOG0583|consen  238 GEF-KIPSYLLS--PEARSLIEKMLVPDPSTRITLL  270 (370)
T ss_pred             CCc-cCCCCcCC--HHHHHHHHHHcCCCcccCCCHH
Confidence            433 355444 3  2334444 44456777776654

>KOG0597|consensus

Probab=100.00  E-value=1.8e-35  Score=277.90  Aligned_cols=229  Identities=17%  Similarity=0.141  Sum_probs=181.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      ++|+.+||+++.+.|.+.||||.+.+........+.+.+|++|++.++||||        |.|++.|++...+|+|+|||
T Consensus        12 ~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpni--------v~m~esfEt~~~~~vVte~a   83 (808)
T KOG0597|consen   12 EGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNI--------VEMLESFETSAHLWVVTEYA   83 (808)
T ss_pred             CCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcch--------hhHHHhhcccceEEEEehhh
Confidence            6899999999999999999999999877755566788999999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      .|++..++..+ ..+   ++..+..++.|+++||.|||+.+                |+|||+||.|||++..|++|+||
T Consensus        84 ~g~L~~il~~d-~~l---pEe~v~~~a~~LVsaL~yLhs~r----------------ilhrd~kPqniLl~~~~~~Klcd  143 (808)
T KOG0597|consen   84 VGDLFTILEQD-GKL---PEEQVRAIAYDLVSALYYLHSNR----------------ILHRDMKPQNILLEKGGTLKLCD  143 (808)
T ss_pred             hhhHHHHHHhc-cCC---CHHHHHHHHHHHHHHHHHHHhcC----------------cccccCCcceeeecCCCceeech
Confidence            99865554543 233   45555667779999999999999                99999999999999999999999


Q ss_pred             cccccccCCCCC--CccccCccccccccc-cccCCc-ceeeh--hHHHHHcCCCCCCCCCCCCCcccchhcccccccccc
Q psy6542         172 LGLACDFSKKKP--HASVESDCILHGYIK-KLGGPF-VSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQD  245 (334)
Q Consensus       172 FGla~~~~~~~~--~~~~~t~~~~~~~v~-~~~~~~-~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  245 (334)
                      ||+|+.+.....  ...-|||.||+||+. ..+|.. +|.|+  |+.|.++.+++||+..+-...-..|..+.....+ .
T Consensus       144 Fg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~-~  222 (808)
T KOG0597|consen  144 FGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPVKPPS-T  222 (808)
T ss_pred             hhhhhhcccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCCCCcc-c
Confidence            999998876653  445689999999985 445665 55566  6666667788999988754444455555443222 2


Q ss_pred             cccHhHHHHHHHhhccCchhhcCCC
Q psy6542         246 LITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       246 ~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+. .-...+...+.+||..|++=+
T Consensus       223 ~S~-~f~nfl~gLL~kdP~~RltW~  246 (808)
T KOG0597|consen  223 ASS-SFVNFLQGLLIKDPAQRLTWT  246 (808)
T ss_pred             ccH-HHHHHHHHHhhcChhhcccHH
Confidence            221 123456777789999998743

>KOG0690|consensus

Probab=100.00  E-value=2.6e-35  Score=261.06  Aligned_cols=229  Identities=17%  Similarity=0.184  Sum_probs=191.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+-.++|-+++.+.||+.+|||++++.-. ......+...|-++|+..+||.+        ..+...|+.++++|+||||
T Consensus       178 kGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFL--------t~LKYsFQt~drlCFVMey  249 (516)
T KOG0690|consen  178 KGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFL--------TSLKYSFQTQDRLCFVMEY  249 (516)
T ss_pred             CCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHH--------HHhhhhhccCceEEEEEEE
Confidence            45678999999999999999999998765 33344467789999999999999        8898899999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      ..||.-+.+.+..+-+++....++-.   +|++||.|||+++                |+.||||.+|+|+|++|++||+
T Consensus       250 anGGeLf~HLsrer~FsE~RtRFYGa---EIvsAL~YLHs~~----------------ivYRDlKLENLlLDkDGHIKit  310 (516)
T KOG0690|consen  250 ANGGELFFHLSRERVFSEDRTRFYGA---EIVSALGYLHSRN----------------IVYRDLKLENLLLDKDGHIKIT  310 (516)
T ss_pred             ccCceEeeehhhhhcccchhhhhhhH---HHHHHhhhhhhCC----------------eeeeechhhhheeccCCceEee
Confidence            99994444455555676656655554   9999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      |||||+.-....  ..++||||.|++|||+ +..|..+.|||    ++|+|| ++++||+..+....+++|+.+++. +|
T Consensus       311 DFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMm-CGRLPFyn~dh~kLFeLIl~ed~k-FP  388 (516)
T KOG0690|consen  311 DFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMM-CGRLPFYNKDHEKLFELILMEDLK-FP  388 (516)
T ss_pred             ecccchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHH-hccCcccccchhHHHHHHHhhhcc-CC
Confidence            999999654443  5678999999999996 57799999999    556664 567899999999999999999886 56


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...++ .++..+...+.+||..|++.-
T Consensus       389 r~ls~-eAktLLsGLL~kdP~kRLGgG  414 (516)
T KOG0690|consen  389 RTLSP-EAKTLLSGLLKKDPKKRLGGG  414 (516)
T ss_pred             ccCCH-HHHHHHHHHhhcChHhhcCCC
Confidence            56664 466777888899999999865

>KOG0592|consensus

Probab=100.00  E-value=7.1e-35  Score=273.12  Aligned_cols=226  Identities=21%  Similarity=0.247  Sum_probs=178.4

Q ss_pred             CceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          14 SKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        14 ~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      |-=.|++|.++.|++.||||++.+... .....+-...|-.+|.+| .||.|        +++|..|++...+|+|+||+
T Consensus        85 SYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgi--------vkLy~TFQD~~sLYFvLe~A  156 (604)
T KOG0592|consen   85 SYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGI--------VKLYFTFQDEESLYFVLEYA  156 (604)
T ss_pred             cceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCe--------EEEEEEeecccceEEEEEec
Confidence            333899999999999999999987655 333344666799999999 89999        99999999999999999999


Q ss_pred             CCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|  +++|.+  .+.+.+...   ..++.||+.||+|||++|                ||||||||+|||+++++++||
T Consensus       157 ~nGdll~~i~K--~Gsfde~ca---R~YAAeIldAleylH~~G----------------IIHRDlKPENILLd~dmhikI  215 (604)
T KOG0592|consen  157 PNGDLLDLIKK--YGSFDETCA---RFYAAEILDALEYLHSNG----------------IIHRDLKPENILLDKDGHIKI  215 (604)
T ss_pred             CCCcHHHHHHH--hCcchHHHH---HHHHHHHHHHHHHHHhcC----------------ceeccCChhheeEcCCCcEEE
Confidence            999  455433  346655444   445569999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-------------C--CccccCcccccccccccc--CCcceeeh--hHHHHHcCCCCCCCCCCCCCc
Q psy6542         170 SDLGLACDFSKKK-------------P--HASVESDCILHGYIKKLG--GPFVSAWQ--TRYAKLFPNRLELHPESGQSK  230 (334)
Q Consensus       170 ~DFGla~~~~~~~-------------~--~~~~~t~~~~~~~v~~~~--~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~  230 (334)
                      +|||.|+.+....             .  .+++||..|.+||++...  ++.+|.|.  |+.+.|..|.+||.+.+..-.
T Consensus       216 TDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Neyli  295 (604)
T KOG0592|consen  216 TDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLI  295 (604)
T ss_pred             eeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHH
Confidence            9999999774432             1  347899999999996444  44555555  777777788999999886656


Q ss_pred             ccchhcccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         231 PELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ++.|+.-++ .++.++.+ ...+.|...+..||..|+++.
T Consensus       296 FqkI~~l~y-~fp~~fp~-~a~dLv~KLLv~dp~~Rlt~~  333 (604)
T KOG0592|consen  296 FQKIQALDY-EFPEGFPE-DARDLIKKLLVRDPSDRLTSQ  333 (604)
T ss_pred             HHHHHHhcc-cCCCCCCH-HHHHHHHHHHccCccccccHH
Confidence            665554444 46667764 456777778889999999975

>KOG0588|consensus

Probab=100.00  E-value=4.2e-34  Score=273.14  Aligned_cols=226  Identities=20%  Similarity=0.218  Sum_probs=175.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCC-cchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRP-HESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~-~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .|+.++|.+|++.+||+.+|||++.+.. ........+.+|+-||+.+.|||+        +++|++++++..+|+|.||
T Consensus        22 ~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnV--------l~LydVwe~~~~lylvlEy   93 (786)
T KOG0588|consen   22 KGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNV--------LRLYDVWENKQHLYLVLEY   93 (786)
T ss_pred             CCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCe--------eeeeeeeccCceEEEEEEe
Confidence            4677799999999999999999999874 355556678889999999999999        9999999999999999999


Q ss_pred             cCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++||  ++++...+  .+.+   ...+.++.||+.|+.|||..+                |+||||||+|+|++.++.+|
T Consensus        94 v~gGELFdylv~kG--~l~e---~eaa~ff~QIi~gv~yCH~~~----------------icHRDLKpENlLLd~~~nIK  152 (786)
T KOG0588|consen   94 VPGGELFDYLVRKG--PLPE---REAAHFFRQILDGVSYCHAFN----------------ICHRDLKPENLLLDVKNNIK  152 (786)
T ss_pred             cCCchhHHHHHhhC--CCCC---HHHHHHHHHHHHHHHHHhhhc----------------ceeccCCchhhhhhcccCEe
Confidence            9999  56654443  4433   334455569999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC-CCccccCcccccccc---ccccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKKK-PHASVESDCILHGYI---KKLGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~~-~~~~~~t~~~~~~~v---~~~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+|.....+. ..++||+|.|++||+   .++.+.++|+|+   ++|++ .++.+||..++-......+.. ..+.
T Consensus       153 IADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfAL-LtG~LPFdDdNir~LLlKV~~-G~f~  230 (786)
T KOG0588|consen  153 IADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFAL-LTGKLPFDDDNIRVLLLKVQR-GVFE  230 (786)
T ss_pred             eeccceeecccCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHH-HhCCCCCCCccHHHHHHHHHc-Cccc
Confidence            99999998665554 578999999999998   355577899999   44554 567889986653333333333 3333


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      .| .+.+....+.+...+.-||..|++-
T Consensus       231 MP-s~Is~eaQdLLr~ml~VDp~~RiT~  257 (786)
T KOG0588|consen  231 MP-SNISSEAQDLLRRMLDVDPSTRITT  257 (786)
T ss_pred             CC-CcCCHHHHHHHHHHhccCccccccH
Confidence            44 3333345555666667788888764

>KOG0610|consensus

Probab=100.00  E-value=2.2e-33  Score=255.82  Aligned_cols=231  Identities=16%  Similarity=0.189  Sum_probs=184.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+..+.||+|+.+.++..+|+|++.+... ......+.+.|.+||++++||.+        +.+|..|+++..+|++|||
T Consensus        87 ~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFl--------PTLYa~fet~~~~cl~mey  158 (459)
T KOG0610|consen   87 CGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFL--------PTLYASFETDKYSCLVMEY  158 (459)
T ss_pred             CCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCcc--------chhhheeeccceeEEEEec
Confidence            46678999999999999999999998776 34455688899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |.|| +..+... ..+.+++....+++.   +++.||+|||-.|                ||.|||||+|||+-++|++-
T Consensus       159 CpGGdL~~LrqkQp~~~fse~~aRFYaA---Evl~ALEYLHmlG----------------ivYRDLKPENILvredGHIM  219 (459)
T KOG0610|consen  159 CPGGDLHSLRQKQPGKRFSESAARFYAA---EVLLALEYLHMLG----------------IVYRDLKPENILVREDGHIM  219 (459)
T ss_pred             CCCccHHHHHhhCCCCccchhhHHHHHH---HHHHHHHHHHhhc----------------eeeccCCcceeEEecCCcEE
Confidence            9999 5554443 335677767776665   9999999999999                99999999999999999999


Q ss_pred             EEecccccccCC-----------------------------------C-----------------------CCCccccCc
Q psy6542         169 ISDLGLACDFSK-----------------------------------K-----------------------KPHASVESD  190 (334)
Q Consensus       169 l~DFGla~~~~~-----------------------------------~-----------------------~~~~~~~t~  190 (334)
                      |+||.|+.....                                   .                       ++.+++||-
T Consensus       220 LsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGTh  299 (459)
T KOG0610|consen  220 LSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTH  299 (459)
T ss_pred             eeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCcccccccccc
Confidence            999999752200                                   0                       123457888


Q ss_pred             ccccccc-ccccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchh
Q psy6542         191 CILHGYI-KKLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRI  265 (334)
Q Consensus       191 ~~~~~~v-~~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~  265 (334)
                      .|.+||+ ...|+..+.|||    .+|||| .+.+||.|.+....+.-++...+.-..........++.|...+.+||..
T Consensus       300 EYlAPEvI~G~GHgsAVDWWtfGIflYEmL-yG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~k  378 (459)
T KOG0610|consen  300 EYLAPEVIRGEGHGSAVDWWTFGIFLYEML-YGTTPFKGSNNKETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSK  378 (459)
T ss_pred             ccccceeeecCCCCchhhHHHHHHHHHHHH-hCCCCcCCCCchhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhh
Confidence            9999998 567799999999    455555 4677999999887776666665432111222236778888888999999


Q ss_pred             hcCCC
Q psy6542         266 VLTNP  270 (334)
Q Consensus       266 r~~~~  270 (334)
                      |+++.
T Consensus       379 Rlg~~  383 (459)
T KOG0610|consen  379 RLGSK  383 (459)
T ss_pred             hhccc
Confidence            99965

>KOG0611|consensus

Probab=100.00  E-value=3.5e-34  Score=260.15  Aligned_cols=224  Identities=21%  Similarity=0.225  Sum_probs=177.0

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +--++|.+|.....|..||||.|+++.. +....-++.+|++||+.|+||||        +++|.+|+..+.+.|||||.
T Consensus        64 GTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhI--------I~IyEVFENkdKIvivMEYa  135 (668)
T KOG0611|consen   64 GTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHI--------IQIYEVFENKDKIVIVMEYA  135 (668)
T ss_pred             CcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCce--------eehhhhhcCCceEEEEEEec
Confidence            3456999999999999999999999887 44455688999999999999999        99999999999999999999


Q ss_pred             CCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .||  .|++..++  ++++   .....++.||++|+.|||.++                ++|||||.+|||+|.++++||
T Consensus       136 S~GeLYDYiSer~--~LsE---rEaRhfFRQIvSAVhYCHknr----------------VvHRDLKLENILLD~N~NiKI  194 (668)
T KOG0611|consen  136 SGGELYDYISERG--SLSE---REARHFFRQIVSAVHYCHKNR----------------VVHRDLKLENILLDQNNNIKI  194 (668)
T ss_pred             CCccHHHHHHHhc--cccH---HHHHHHHHHHHHHHHHHhhcc----------------ceecccchhheeecCCCCeee
Confidence            999  56665543  4544   344456669999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-CCccccCccccccccc---cccCCcceeeh--hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         170 SDLGLACDFSKKK-PHASVESDCILHGYIK---KLGGPFVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       170 ~DFGla~~~~~~~-~~~~~~t~~~~~~~v~---~~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      +||||+..+..+. ..++||++.|.+||+.   ++.++..|.|+  ++.+.+..+..||.|.+.-..-..|..+.+.+ +
T Consensus       195 ADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaYrE-P  273 (668)
T KOG0611|consen  195 ADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAYRE-P  273 (668)
T ss_pred             eccchhhhhccccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccccC-C
Confidence            9999999887766 4679999999999983   44467889999  77777788888998887443333344443332 2


Q ss_pred             cccccHhHHHHHHHhhccCchhhcC
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLT  268 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~  268 (334)
                      ..-+  ...+.|.-.+.-+|..|-+
T Consensus       274 ~~PS--dA~gLIRwmLmVNP~RRAT  296 (668)
T KOG0611|consen  274 ETPS--DASGLIRWMLMVNPERRAT  296 (668)
T ss_pred             CCCc--hHHHHHHHHHhcCcccchh
Confidence            2222  3455566666666766654

>KOG0663|consensus

Probab=100.00  E-value=9.1e-34  Score=252.07  Aligned_cols=191  Identities=17%  Similarity=0.166  Sum_probs=160.6

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee--cCCeEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS--EPNSHYIIG   88 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~--~~~~~~ivm   88 (334)
                      ..++-+.||+|+++.|++.||+|.++.......+---..+|+.+|.+++||||        |.+-.+..  +-+.+||||
T Consensus        85 ~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NI--------V~vkEVVvG~~~d~iy~VM  156 (419)
T KOG0663|consen   85 EEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNI--------VEVKEVVVGSNMDKIYIVM  156 (419)
T ss_pred             ccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCe--------eeeEEEEeccccceeeeeH
Confidence            46788899999999999999999999888765566666789999999999999        99998887  446799999


Q ss_pred             EccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          89 VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        89 Ey~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |||+.++..+...-...+.....++++.   |++.|+.|||++.                |+||||||+|+|+++.|.+|
T Consensus       157 e~~EhDLksl~d~m~q~F~~~evK~L~~---QlL~glk~lH~~w----------------ilHRDLK~SNLLm~~~G~lK  217 (419)
T KOG0663|consen  157 EYVEHDLKSLMETMKQPFLPGEVKTLML---QLLRGLKHLHDNW----------------ILHRDLKTSNLLLSHKGILK  217 (419)
T ss_pred             HHHHhhHHHHHHhccCCCchHHHHHHHH---HHHHHHHHHhhce----------------eEecccchhheeeccCCcEE
Confidence            9999997666555555776666666554   9999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC--CccccCccccccccc---cccCCcceeeh--hHHHHHcCCCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP--HASVESDCILHGYIK---KLGGPFVSAWQ--TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       169 l~DFGla~~~~~~~~--~~~~~t~~~~~~~v~---~~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~  228 (334)
                      |+||||||.+++...  ....-|.+|-+||++   ..+++..|+|+  |++..+..+.+-|.|.+..
T Consensus       218 iaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~  284 (419)
T KOG0663|consen  218 IADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEI  284 (419)
T ss_pred             ecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchH
Confidence            999999999887742  223458999999984   45567788888  8888888888888888754

>KOG0605|consensus

Probab=100.00  E-value=1.2e-33  Score=264.86  Aligned_cols=228  Identities=17%  Similarity=0.198  Sum_probs=176.2

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .||..+.||+|+.+.||..+|+|++++... ...-.+++..|-.||....+|.|        |++|..|++.+++|+|||
T Consensus       150 gkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~v--------VKLyYsFQD~~~LYLiME  221 (550)
T KOG0605|consen  150 GKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWV--------VKLYYSFQDKEYLYLIME  221 (550)
T ss_pred             ccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcE--------EEEEEEecCCCeeEEEEE
Confidence            368889999999999999999999998876 44445688889999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|| ...++.. ...+.+....+++.   +++.|++.||+.|                +|||||||+|+|||..|++|
T Consensus       222 ylPGGD~mTLL~~-~~~L~e~~arfYia---E~vlAI~~iH~~g----------------yIHRDIKPdNlLiD~~GHiK  281 (550)
T KOG0605|consen  222 YLPGGDMMTLLMR-KDTLTEDWARFYIA---ETVLAIESIHQLG----------------YIHRDIKPDNLLIDAKGHIK  281 (550)
T ss_pred             ecCCccHHHHHHh-cCcCchHHHHHHHH---HHHHHHHHHHHcC----------------cccccCChhheeecCCCCEe
Confidence            99999 3333232 23555555555554   9999999999999                99999999999999999999


Q ss_pred             EEecccccccCCC-----------------------C--------------------------CCccccCcccccccc-c
Q psy6542         169 ISDLGLACDFSKK-----------------------K--------------------------PHASVESDCILHGYI-K  198 (334)
Q Consensus       169 l~DFGla~~~~~~-----------------------~--------------------------~~~~~~t~~~~~~~v-~  198 (334)
                      |+|||||..+...                       .                          ..+.+|||-|++||| .
T Consensus       282 LSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll  361 (550)
T KOG0605|consen  282 LSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLL  361 (550)
T ss_pred             eccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHh
Confidence            9999999633110                       0                          124679999999998 5


Q ss_pred             cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhccc-ccccccccccH-hHHHHHHHhhccCchhhcC
Q psy6542         199 KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQ-IEEVSQDLITV-KGEQCVQLKLTRDTRIVLT  268 (334)
Q Consensus       199 ~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~-~~~~~i~~~~~~~p~~r~~  268 (334)
                      ..+|....|||    ++||||. |.+||++++....+..|..-. ....|.+.... .+.+.|...+. ||..|++
T Consensus       362 ~kgY~~~cDwWSLG~ImyEmLv-GyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG  435 (550)
T KOG0605|consen  362 GKGYGKECDWWSLGCIMYEMLV-GYPPFCSETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLG  435 (550)
T ss_pred             cCCCCccccHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcC
Confidence            77899999999    5666655 567999998777666554432 23333333322 44455555544 8999988

>KOG0578|consensus

Probab=100.00  E-value=1e-33  Score=266.96  Aligned_cols=181  Identities=14%  Similarity=0.157  Sum_probs=150.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .+.++-||.|....+++.||||.+.......  +.-+.+|+.+|+..+|+||        |++++.|--.+.+|+||||+
T Consensus       283 qgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~--keLilnEi~Vm~~~~H~Ni--------Vnfl~Sylv~deLWVVMEym  352 (550)
T KOG0578|consen  283 QGATGGVYVARKISTKQEVAIKRMDLRKQPK--KELLLNEILVMRDLHHPNI--------VNFLDSYLVGDELWVVMEYM  352 (550)
T ss_pred             cccccceeeeeeccCCceEEEEEEEeccCCc--hhhhHHHHHHHHhccchHH--------HHHHHHhcccceeEEEEeec
Confidence            4678899999999999999999999777643  3456789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|| +..+....     ...+.++..++.+++.||+|||.++                |+|||||.+|||++.+|.+||+
T Consensus       353 ~ggsLTDvVt~~-----~~~E~qIA~Icre~l~aL~fLH~~g----------------IiHrDIKSDnILL~~~g~vKlt  411 (550)
T KOG0578|consen  353 EGGSLTDVVTKT-----RMTEGQIAAICREILQGLKFLHARG----------------IIHRDIKSDNILLTMDGSVKLT  411 (550)
T ss_pred             CCCchhhhhhcc-----cccHHHHHHHHHHHHHHHHHHHhcc----------------eeeeccccceeEeccCCcEEEe
Confidence            999 43332221     1256667788889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCccccccccc--cccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIK--KLGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~--~~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||+|..+....  ..+..|||+||+||+.  ..+++..|+|+   +++||.-++ +||..
T Consensus       412 DFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGE-PPYln  471 (550)
T KOG0578|consen  412 DFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGE-PPYLN  471 (550)
T ss_pred             eeeeeeccccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCC-CCccC
Confidence            999999887665  4667899999999983  45677888888   666765554 45543

>KOG0585|consensus

Probab=100.00  E-value=4.5e-33  Score=257.31  Aligned_cols=231  Identities=18%  Similarity=0.199  Sum_probs=173.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc--------chHH----hhhHHHHHHHHHhcCCCCcccccccceeeEEEEee
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH--------ESRV----AKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS   79 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~--------~~~~----~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~   79 (334)
                      .++-++|.+|++..+++.||||++.+...        ....    .+...+|+.||++|+||||        |+++.+..
T Consensus       107 ~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nV--------V~LiEvLD  178 (576)
T KOG0585|consen  107 SGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNV--------VKLIEVLD  178 (576)
T ss_pred             CCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCe--------eEEEEeec
Confidence            35566999999999999999999987643        1111    1367889999999999999        99999998


Q ss_pred             cC--CeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCC
Q psy6542          80 EP--NSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPA  157 (334)
Q Consensus        80 ~~--~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~  157 (334)
                      +.  +.+|||+|||..|.-.........   +...++..++..++.||+|||.++                ||||||||+
T Consensus       179 DP~s~~~YlVley~s~G~v~w~p~d~~e---ls~~~Ar~ylrDvv~GLEYLH~Qg----------------iiHRDIKPs  239 (576)
T KOG0585|consen  179 DPESDKLYLVLEYCSKGEVKWCPPDKPE---LSEQQARKYLRDVVLGLEYLHYQG----------------IIHRDIKPS  239 (576)
T ss_pred             CcccCceEEEEEeccCCccccCCCCccc---ccHHHHHHHHHHHHHHHHHHHhcC----------------eeccccchh
Confidence            65  579999999998831121222111   345555666779999999999999                999999999


Q ss_pred             ceeeCCCCCEEEEecccccccCCCC-------CCccccCcccccccccccc------CCcceeeh--hHHHHHcCCCCCC
Q psy6542         158 NILLDEHGHVRISDLGLACDFSKKK-------PHASVESDCILHGYIKKLG------GPFVSAWQ--TRYAKLFPNRLEL  222 (334)
Q Consensus       158 NiLl~~~~~vkl~DFGla~~~~~~~-------~~~~~~t~~~~~~~v~~~~------~~~~~~w~--~~~~~l~~~~~~~  222 (334)
                      |+|++++|+|||+|||.+..+..+.       -....|||.+++||+...+      +...|+|+  +..++|..+.+||
T Consensus       240 NLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF  319 (576)
T KOG0585|consen  240 NLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPF  319 (576)
T ss_pred             heEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCc
Confidence            9999999999999999998773332       2346899999999984332      23456666  4445556677899


Q ss_pred             CCCCCCCcccchhccccccccccc-ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         223 HPESGQSKPELIFMDQIEEVSQDL-ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       223 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .++.....++.|....+. ++..- .-...++.|...+.+||..|++-+
T Consensus       320 ~~~~~~~l~~KIvn~pL~-fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~  367 (576)
T KOG0585|consen  320 FDDFELELFDKIVNDPLE-FPENPEINEDLKDLIKRLLEKDPEQRITLP  367 (576)
T ss_pred             ccchHHHHHHHHhcCccc-CCCcccccHHHHHHHHHHhhcChhheeehh
Confidence            999887788877777553 22111 111567788888899999999865

>KOG0661|consensus

Probab=100.00  E-value=1.2e-33  Score=261.37  Aligned_cols=262  Identities=15%  Similarity=0.120  Sum_probs=185.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCC-eEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPN-SHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~-~~~ivmE   89 (334)
                      -|..+-||+|..+++|..||||.+++........ --.+|+..|++|+ ||||        |++++++.+++ .+|+|||
T Consensus        20 DGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~-~nLREvksL~kln~hpni--------ikL~Evi~d~~~~L~fVfE   90 (538)
T KOG0661|consen   20 DGTFGSVYLAKSKETGELVAIKKMKKKFYSWEEC-MNLREVKSLRKLNPHPNI--------IKLKEVIRDNDRILYFVFE   90 (538)
T ss_pred             CCcceeEEEeeecCCCceeeHHHHHhhhccHHHH-HHHHHHHHHHhcCCCCcc--------hhhHHHhhccCceEeeeHH
Confidence            3678899999999999999999999877643333 3356999999999 9999        99999999888 8999999


Q ss_pred             ccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          90 RQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        90 y~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ||+.++-.+.+.+.+.+   .+..+..|++||+.||.|+|.+|                +.|||+||+|||+.....+||
T Consensus        91 ~Md~NLYqLmK~R~r~f---se~~irnim~QilqGL~hiHk~G----------------fFHRDlKPENiLi~~~~~iKi  151 (538)
T KOG0661|consen   91 FMDCNLYQLMKDRNRLF---SESDIRNIMYQILQGLAHIHKHG----------------FFHRDLKPENILISGNDVIKI  151 (538)
T ss_pred             hhhhhHHHHHhhcCCcC---CHHHHHHHHHHHHHHHHHHHhcC----------------cccccCChhheEecccceeEe
Confidence            99999777766665555   55566778889999999999999                999999999999998889999


Q ss_pred             EecccccccCCCCCCc-cccCccccccccc--cccCC-cceeeh--hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         170 SDLGLACDFSKKKPHA-SVESDCILHGYIK--KLGGP-FVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~-~~~t~~~~~~~v~--~~~~~-~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      +||||||...+..+.+ +..|-+|-+||++  ...|+ +.|+|.  |+.+.++.-++-|-|.+.  .-++.-.-++.+-|
T Consensus       152 aDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE--~Dqi~KIc~VLGtP  229 (538)
T KOG0661|consen  152 ADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASE--IDQIYKICEVLGTP  229 (538)
T ss_pred             cccccccccccCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcH--HHHHHHHHHHhCCC
Confidence            9999999988887654 6678999999984  33455 455555  666666777777777763  33333222333333


Q ss_pred             cccccHhHHHHHHHhhc-cCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHH
Q psy6542         244 QDLITVKGEQCVQLKLT-RDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGS  306 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~-~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~  306 (334)
                      ..-....+ .-+...|. +=|......--..++..++  +...++..+..-+|..|+ |.+.|++
T Consensus       230 ~~~~~~eg-~~La~~mnf~~P~~~~~~l~~L~p~~s~--~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  230 DKDSWPEG-YNLASAMNFRFPQVKPSPLKDLLPNASS--EAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             ccccchhH-HHHHHHhccCCCcCCCCChHHhCcccCH--HHHHHHHHHhcCCCccCccHHHHhcC
Confidence            22221122 12222221 1111111111002222222  334477777788888888 7777763

>KOG0660|consensus

Probab=100.00  E-value=3.4e-33  Score=251.16  Aligned_cols=195  Identities=21%  Similarity=0.175  Sum_probs=156.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-----CCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-----PNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-----~~~~~i   86 (334)
                      +|..+-|..|.++.||+.||||.+..........++..+|+.+|+.++|+||        +.+++++..     -+.+|+
T Consensus        32 ~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNI--------i~l~di~~p~~~~~f~DvYi  103 (359)
T KOG0660|consen   32 RGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENI--------IGLLDIFRPPSRDKFNDVYL  103 (359)
T ss_pred             CcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCc--------ceEEeecccccccccceeEE
Confidence            4667799999999999999999999777777788899999999999999999        999999875     356999


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |+|+|+.++..+.+... .+.+   .-+..+++|++.||.|+|+.+                |+||||||+|+|++.++.
T Consensus       104 V~elMetDL~~iik~~~-~L~d---~H~q~f~YQiLrgLKyiHSAn----------------ViHRDLKPsNll~n~~c~  163 (359)
T KOG0660|consen  104 VFELMETDLHQIIKSQQ-DLTD---DHAQYFLYQILRGLKYIHSAN----------------VIHRDLKPSNLLLNADCD  163 (359)
T ss_pred             ehhHHhhHHHHHHHcCc-cccH---HHHHHHHHHHHHhcchhhccc----------------ccccccchhheeeccCCC
Confidence            99999988877766541 2333   333344579999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCC----CCCccccCccccccccc---cccCCcceeeh--hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         167 VRISDLGLACDFSKK----KPHASVESDCILHGYIK---KLGGPFVSAWQ--TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       167 vkl~DFGla~~~~~~----~~~~~~~t~~~~~~~v~---~~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      +||+|||||+.....    ....+..|-+|-+||+.   ..++...|+||  |+++.|.++++-|.|.+.....+++
T Consensus       164 lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI  240 (359)
T KOG0660|consen  164 LKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLI  240 (359)
T ss_pred             EEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHH
Confidence            999999999988642    22345668899999983   33345566677  8888888889888888754434333

>KOG0033|consensus

Probab=100.00  E-value=1.2e-33  Score=241.90  Aligned_cols=223  Identities=21%  Similarity=0.245  Sum_probs=176.0

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC--
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP--   94 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~--   94 (334)
                      -|+.+.++.||+.+|+|++..........+.+.+|++|.+.|+||||        |++.+.+.+....|||+|++.|+  
T Consensus        26 vVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~I--------vrL~~ti~~~~~~ylvFe~m~G~dl   97 (355)
T KOG0033|consen   26 VVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNI--------VRLHDSIQEESFHYLVFDLVTGGEL   97 (355)
T ss_pred             HHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcE--------eehhhhhcccceeEEEEecccchHH
Confidence            57889999999999999999877755566788899999999999999        99999999999999999999999  


Q ss_pred             -hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC---CCEEEE
Q psy6542          95 -KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH---GHVRIS  170 (334)
Q Consensus        95 -l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~---~~vkl~  170 (334)
                       .+.+.+   .-+++....-+++   ||+.+|.|+|+++                |+|||+||+|+|+.+.   .-|||+
T Consensus        98 ~~eIV~R---~~ySEa~aSH~~r---QiLeal~yCH~n~----------------IvHRDvkP~nllLASK~~~A~vKL~  155 (355)
T KOG0033|consen   98 FEDIVAR---EFYSEADASHCIQ---QILEALAYCHSNG----------------IVHRDLKPENLLLASKAKGAAVKLA  155 (355)
T ss_pred             HHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHhcC----------------ceeccCChhheeeeeccCCCceeec
Confidence             333322   3455555555555   9999999999999                9999999999999654   449999


Q ss_pred             ecccccccCCCCC-CccccCccccccccc-cccCC-cceeeh--hHHHHHcCCCCCCCCCCCCCcccchhcccccccccc
Q psy6542         171 DLGLACDFSKKKP-HASVESDCILHGYIK-KLGGP-FVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQD  245 (334)
Q Consensus       171 DFGla~~~~~~~~-~~~~~t~~~~~~~v~-~~~~~-~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  245 (334)
                      |||+|..++.+.. ....|||.||+||+. +.+|. ++|+|+  ++.+.+..+.+||.+++....++.|....+. .+..
T Consensus       156 ~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd-~~~~  234 (355)
T KOG0033|consen  156 DFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYD-YPSP  234 (355)
T ss_pred             ccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccC-CCCc
Confidence            9999998885443 457889999999984 34455 555565  5556667788899998888888888777654 3333


Q ss_pred             cccH---hHHHHHHHhhccCchhhcCCC
Q psy6542         246 LITV---KGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       246 ~~~~---~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .|+-   ..++.+...+.-||.+|.+..
T Consensus       235 ~w~~is~~Ak~LvrrML~~dP~kRIta~  262 (355)
T KOG0033|consen  235 EWDTVTPEAKSLIRRMLTVNPKKRITAD  262 (355)
T ss_pred             ccCcCCHHHHHHHHHHhccChhhhccHH
Confidence            4433   455566666677999999865

>KOG0582|consensus

Probab=100.00  E-value=6.8e-32  Score=248.00  Aligned_cols=184  Identities=14%  Similarity=0.144  Sum_probs=149.9

Q ss_pred             CceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCC
Q psy6542          14 SKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSG   93 (334)
Q Consensus        14 ~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g   93 (334)
                      -...||+|+++.+++.||||++....-... ...+++|++.|+.++||||        ++++..|..+..+|+||.||.+
T Consensus        38 ~sa~V~~A~c~p~~e~VAIK~inLEkc~~~-ld~l~kE~~~msl~~HPNI--------v~~~~sFvv~~~LWvVmpfMa~  108 (516)
T KOG0582|consen   38 ASAVVYLARCIPTNEVVAIKIINLEKCNND-LDALRKEVQTMSLIDHPNI--------VTYHCSFVVDSELWVVMPFMAG  108 (516)
T ss_pred             ceeEeeeeeecccCCEEEEEEeehhhhhhh-HHHHHHHHHHhhhcCCCCc--------ceEEEEEEecceeEEeehhhcC
Confidence            346899999999999999999998776544 5578889999999999999        9999999999999999999999


Q ss_pred             C--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          94 P--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        94 ~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      |  ++.++..-...+   .+..+..++.+++.||.|||.+|                .||||+|+.||||+++|.|||+|
T Consensus       109 GS~ldIik~~~~~Gl---~E~~Ia~iLre~LkaL~YLH~~G----------------~IHRdvKAgnILi~~dG~VkLad  169 (516)
T KOG0582|consen  109 GSLLDIIKTYYPDGL---EEASIATILREVLKALDYLHQNG----------------HIHRDVKAGNILIDSDGTVKLAD  169 (516)
T ss_pred             CcHHHHHHHHccccc---cHHHHHHHHHHHHHHHHHHHhcC----------------ceecccccccEEEcCCCcEEEcC
Confidence            9  666655444444   44455566679999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC-----C-CccccCccccccccc---cccCCc-ceeeh--hHHHHHcCCCCCCCCC
Q psy6542         172 LGLACDFSKKK-----P-HASVESDCILHGYIK---KLGGPF-VSAWQ--TRYAKLFPNRLELHPE  225 (334)
Q Consensus       172 FGla~~~~~~~-----~-~~~~~t~~~~~~~v~---~~~~~~-~~~w~--~~~~~l~~~~~~~~~~  225 (334)
                      ||.+..+....     . .++.|+++||+||+.   ..||.+ +|+|+  +....++.|..||+--
T Consensus       170 Fgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~  235 (516)
T KOG0582|consen  170 FGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKY  235 (516)
T ss_pred             ceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccC
Confidence            99987554432     1 456789999999993   455665 55555  5556667888887543

>KOG0197|consensus

Probab=100.00  E-value=3.5e-32  Score=255.54  Aligned_cols=229  Identities=19%  Similarity=0.124  Sum_probs=174.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      ++-++.||.++... ...||||.++.....   ...|.+|++||++|+|+||        |++|+++..++.+||||||+
T Consensus       216 ~G~FG~V~~g~~~~-~~~vavk~ik~~~m~---~~~f~~Ea~iMk~L~H~~l--------V~l~gV~~~~~piyIVtE~m  283 (468)
T KOG0197|consen  216 SGQFGEVWLGKWNG-STKVAVKTIKEGSMS---PEAFLREAQIMKKLRHEKL--------VKLYGVCTKQEPIYIVTEYM  283 (468)
T ss_pred             CCccceEEEEEEcC-CCcccceEEeccccC---hhHHHHHHHHHHhCcccCe--------EEEEEEEecCCceEEEEEec
Confidence            45567888887766 558999999976552   2456689999999999999        99999999989999999999


Q ss_pred             CCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ..|  ++++.......+   ....++.++.|||+|++||++++                +|||||...|||++++..+||
T Consensus       284 ~~GsLl~yLr~~~~~~l---~~~~Ll~~a~qIaeGM~YLes~~----------------~IHRDLAARNiLV~~~~~vKI  344 (468)
T KOG0197|consen  284 PKGSLLDYLRTREGGLL---NLPQLLDFAAQIAEGMAYLESKN----------------YIHRDLAARNILVDEDLVVKI  344 (468)
T ss_pred             ccCcHHHHhhhcCCCcc---chHHHHHHHHHHHHHHHHHHhCC----------------ccchhhhhhheeeccCceEEE
Confidence            888  666655333233   55667788889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCcccc---Ccccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKKPHASVE---SDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~---t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||||+...++......|   ..-+++||...  ..+.++|+||   +++|+++.++.|+.+.+..             
T Consensus       345 sDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~-------------  411 (468)
T KOG0197|consen  345 SDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNE-------------  411 (468)
T ss_pred             cccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHH-------------
Confidence            9999999666665444433   46678999854  4478899999   8899999888876444311             


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccchhHHHH
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELL  304 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~lL  304 (334)
                                  -+...+.  --.|+.+|    +.+|+++.++|..||..+++  .||+.+.|
T Consensus       412 ------------ev~~~le--~GyRlp~P----~~CP~~vY~lM~~CW~~~P~--~RPtF~~L  454 (468)
T KOG0197|consen  412 ------------EVLELLE--RGYRLPRP----EGCPDEVYELMKSCWHEDPE--DRPTFETL  454 (468)
T ss_pred             ------------HHHHHHh--ccCcCCCC----CCCCHHHHHHHHHHhhCCcc--cCCCHHHH
Confidence                        1111111  12345555    78899999988889887654  44533333

>KOG0580|consensus

Probab=100.00  E-value=2.3e-33  Score=239.47  Aligned_cols=230  Identities=17%  Similarity=0.187  Sum_probs=180.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      ++.+++||+|+.++++..||+|++.+... .....+++.+|++|.+.|+||||        .++|++|.+...+|+++||
T Consensus        32 kgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpni--------lrlY~~fhd~~riyLilEy  103 (281)
T KOG0580|consen   32 KGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNI--------LRLYGYFHDSKRIYLILEY  103 (281)
T ss_pred             CCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccH--------HhhhhheeccceeEEEEEe
Confidence            57788999999999999999999997765 44566788999999999999999        9999999999999999999


Q ss_pred             cCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ...|  +..+......++.+....   .++.|++.||.|+|.++                ||||||||+|+|++.+|.+|
T Consensus       104 a~~gel~k~L~~~~~~~f~e~~~a---~Yi~q~A~Al~y~h~k~----------------VIhRdiKpenlLlg~~~~lk  164 (281)
T KOG0580|consen  104 APRGELYKDLQEGRMKRFDEQRAA---TYIKQLANALLYCHLKR----------------VIHRDIKPENLLLGSAGELK  164 (281)
T ss_pred             cCCchHHHHHHhcccccccccchh---HHHHHHHHHHHHhccCC----------------cccCCCCHHHhccCCCCCee
Confidence            9998  445554455566554444   44559999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCCCccccCccccccccc-cccCCcc-eeeh--hHHHHHcCCCCCCCCCCCCCcccchhccccccccc
Q psy6542         169 ISDLGLACDFSKKKPHASVESDCILHGYIK-KLGGPFV-SAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQ  244 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~~t~~~~~~~v~-~~~~~~~-~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  244 (334)
                      ++|||=+.........+.|||.-|.+||+- ..++... |.|+  ++-+.+..+.+||...+....+.-|...++. .|.
T Consensus       165 iAdfGwsV~~p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~-~p~  243 (281)
T KOG0580|consen  165 IADFGWSVHAPSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLK-FPS  243 (281)
T ss_pred             ccCCCceeecCCCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHcccc-CCc
Confidence            999999988888888899999999999983 4555554 4555  3334445567788888866666666655554 332


Q ss_pred             ccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         245 DLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       245 ~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ..+ ....+.|...+..+|..|+.-.
T Consensus       244 ~is-~~a~dlI~~ll~~~p~~r~~l~  268 (281)
T KOG0580|consen  244 TIS-GGAADLISRLLVKNPIERLALT  268 (281)
T ss_pred             ccC-hhHHHHHHHHhccCccccccHH
Confidence            222 2445566666677777776533

>KOG0594|consensus

Probab=99.98  E-value=2.8e-31  Score=239.03  Aligned_cols=192  Identities=20%  Similarity=0.172  Sum_probs=150.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCC-cccccccceeeEEEEeecCC------eE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEP-FKKCVLLFKMNLYKVTSEPN------SH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~-i~~~~~~~~v~~~~~~~~~~------~~   84 (334)
                      ++.-..||+|+++.+|+.||+|.++....+...-....+|+.+++.|+|+| |        |.+++++.+.+      .+
T Consensus        21 eGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~i--------v~L~dv~~~~~~~~~~~~l   92 (323)
T KOG0594|consen   21 EGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHI--------VRLHDVIHTSNNHRGIGKL   92 (323)
T ss_pred             CCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcce--------EEEEeeeeecccccccceE
Confidence            356679999999999999999999988764445555677999999999999 9        99999999877      89


Q ss_pred             EEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          85 YIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        85 ~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      ++|+||++-++..............+...+..++.||+.||+|||+++                |+||||||+|||++++
T Consensus        93 ~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~----------------IlHRDLKPQNlLi~~~  156 (323)
T KOG0594|consen   93 YLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHG----------------ILHRDLKPQNLLISSS  156 (323)
T ss_pred             EEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCC----------------eecccCCcceEEECCC
Confidence            999999999943322221110011133455667779999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCC-C-CccccCccccccccc---cccCCcceeeh--hHHHHHcCCCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKK-P-HASVESDCILHGYIK---KLGGPFVSAWQ--TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~-~-~~~~~t~~~~~~~v~---~~~~~~~~~w~--~~~~~l~~~~~~~~~~~~  227 (334)
                      |.+||+|||+|+.+.-.. . ..-.+|-+|-|||++   ..+.+..|+|+  |++..|+.+.+-|.|.++
T Consensus       157 G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se  226 (323)
T KOG0594|consen  157 GVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSE  226 (323)
T ss_pred             CcEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcH
Confidence            999999999999776333 2 234568899999984   24456777777  888777888877777764

>KOG0192|consensus

Probab=99.98  E-value=1.4e-31  Score=250.41  Aligned_cols=188  Identities=17%  Similarity=0.169  Sum_probs=149.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC-eEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN-SHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~-~~~ivmEy   90 (334)
                      +++...||++....+- .||||++..........+.|.+|+.+|.+++||||        |++++++.++. .++|||||
T Consensus        51 ~G~~g~V~~~~~~g~~-~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNI--------V~f~G~~~~~~~~~~iVtEy  121 (362)
T KOG0192|consen   51 SGSFGTVYKGKWRGTD-VVAVKIISDPDFDDESRKAFRREASLLSRLRHPNI--------VQFYGACTSPPGSLCIVTEY  121 (362)
T ss_pred             cCCceeEEEEEeCCce-eEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCe--------eeEEEEEcCCCCceEEEEEe
Confidence            5777899988766532 39999999876644447789999999999999999        99999999887 79999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-CEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-HVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-~vk  168 (334)
                      +++| +..+....  ..........+.|+.||+.||+|||+++              | ||||||||+|||++.++ ++|
T Consensus       122 ~~~GsL~~~l~~~--~~~~l~~~~~l~~aldiArGm~YLH~~~--------------~-iIHrDLK~~NiLv~~~~~~~K  184 (362)
T KOG0192|consen  122 MPGGSLSVLLHKK--RKRKLPLKVRLRIALDIARGMEYLHSEG--------------P-IIHRDLKSDNILVDLKGKTLK  184 (362)
T ss_pred             CCCCcHHHHHhhc--ccCCCCHHHHHHHHHHHHHHHHHHhcCC--------------C-eeecccChhhEEEcCCCCEEE
Confidence            9999 55544432  1233366777889999999999999998              3 89999999999999998 999


Q ss_pred             EEecccccccCCC--CCCccccCccccccccccc----cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKK--KPHASVESDCILHGYIKKL----GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~~----~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+++.....  ......||+.||+||+...    +..++|++|   ++||++++.. ||....
T Consensus       185 I~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~-Pf~~~~  250 (362)
T KOG0192|consen  185 IADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEI-PFEDLA  250 (362)
T ss_pred             ECCCccceeeccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCC-CCCCCC
Confidence            9999999977764  2333678999999999663    345677777   7778766554 654443

>KOG0032|consensus

Probab=99.98  E-value=1.7e-31  Score=251.81  Aligned_cols=228  Identities=21%  Similarity=0.197  Sum_probs=183.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      ++.+..||.|.++.||+.+|+|.+.+... .......+.+|++||+++. ||||        |+++++|++.+.+|+|||
T Consensus        45 ~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpni--------v~l~~~~e~~~~~~lvmE  116 (382)
T KOG0032|consen   45 RGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNI--------VQLKDAFEDPDSVYLVME  116 (382)
T ss_pred             CCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCE--------EEEEEEEEcCCeEEEEEE
Confidence            67788999999999999999999998776 2223456788999999999 9999        999999999999999999


Q ss_pred             ccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC---
Q psy6542          90 RQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH---  164 (334)
Q Consensus        90 y~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~---  164 (334)
                      +|.||  +|.+...   .+++   .....++.|++.++.|||+.+                |+||||||+|+|+...   
T Consensus       117 L~~GGeLfd~i~~~---~~sE---~da~~~~~~il~av~~lH~~g----------------vvHrDlKpEN~L~~~~~~~  174 (382)
T KOG0032|consen  117 LCEGGELFDRIVKK---HYSE---RDAAGIIRQILEAVKYLHSLG----------------VVHRDLKPENLLLASKDEG  174 (382)
T ss_pred             ecCCchHHHHHHHc---cCCH---HHHHHHHHHHHHHHHHHHhCC----------------ceeccCCHHHeeeccccCC
Confidence            99999  5666444   2544   444555669999999999999                9999999999999654   


Q ss_pred             -CCEEEEecccccccCCC-CCCccccCcccccccccc-cc-CCcceeeh--hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         165 -GHVRISDLGLACDFSKK-KPHASVESDCILHGYIKK-LG-GPFVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       165 -~~vkl~DFGla~~~~~~-~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                       +.+|++|||++...... .....+||+.|++||+.. .+ +...|+|+  ++.+.|.++.+||.+.+.......+....
T Consensus       175 ~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~  254 (382)
T KOG0032|consen  175 SGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGD  254 (382)
T ss_pred             CCcEEEeeCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCC
Confidence             47999999999988774 356789999999999965 44 55677777  55566677888999998776666665555


Q ss_pred             ccccccccccH---hHHHHHHHhhccCchhhcCCC
Q psy6542         239 IEEVSQDLITV---KGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       239 ~~~~~~~~~~~---~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      + .+....|+.   ...+.+...+..||..|++..
T Consensus       255 ~-~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~  288 (382)
T KOG0032|consen  255 F-DFTSEPWDDISESAKDFIRKLLEFDPRKRLTAA  288 (382)
T ss_pred             C-CCCCCCccccCHHHHHHHHHhcccCcccCCCHH
Confidence            5 345555554   566678888888999998865

>KOG0198|consensus

Probab=99.97  E-value=8.6e-32  Score=245.44  Aligned_cols=183  Identities=22%  Similarity=0.206  Sum_probs=143.7

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC--eEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN--SHYIIG   88 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~--~~~ivm   88 (334)
                      -|++.+.||++.++++|..+|||.+.......  .+.+.+|+++|++++||||        |++++......  .++|.|
T Consensus        26 G~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~--~~~l~~Ei~iL~~l~~p~I--------V~~~G~~~~~~~~~~~i~m   95 (313)
T KOG0198|consen   26 GRGSFGSVYLATNKKTGELMAVKSVELEDSPT--SESLEREIRILSRLNHPNI--------VQYYGSSSSRENDEYNIFM   95 (313)
T ss_pred             cCccceEEEEEEecCCCcceeeeeeecccchh--HHHHHHHHHHHHhCCCCCE--------EeeCCccccccCeeeEeee
Confidence            36888999999999999999999998764322  5678899999999999999        99999755444  699999


Q ss_pred             EccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-CC
Q psy6542          89 VRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-HG  165 (334)
Q Consensus        89 Ey~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-~~  165 (334)
                      ||+.|| + +.+..... .+++   ..+..+..||+.||.|||+++                |+||||||+|||++. ++
T Consensus        96 Ey~~~GsL~~~~~~~g~-~l~E---~~v~~ytr~iL~GL~ylHs~g----------------~vH~DiK~~NiLl~~~~~  155 (313)
T KOG0198|consen   96 EYAPGGSLSDLIKRYGG-KLPE---PLVRRYTRQILEGLAYLHSKG----------------IVHCDIKPANILLDPSNG  155 (313)
T ss_pred             eccCCCcHHHHHHHcCC-CCCH---HHHHHHHHHHHHHHHHHHhCC----------------EeccCcccceEEEeCCCC
Confidence            999999 4 33433332 4444   444455569999999999999                999999999999999 79


Q ss_pred             CEEEEecccccccCC-----CCCCccccCcccccccccccc-CC--cceeeh---hHHHHHcCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSK-----KKPHASVESDCILHGYIKKLG-GP--FVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       166 ~vkl~DFGla~~~~~-----~~~~~~~~t~~~~~~~v~~~~-~~--~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .+||+|||++.....     .......||+.||+||+...+ ..  .+|+|+   ++.||+. +..||..
T Consensus       156 ~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~T-g~~PW~~  224 (313)
T KOG0198|consen  156 DVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLT-GKPPWSE  224 (313)
T ss_pred             eEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccC-CCCcchh
Confidence            999999999987663     224457899999999997644 33  677788   4556544 4667643

>KOG0589|consensus

Probab=99.97  E-value=1.4e-31  Score=250.57  Aligned_cols=229  Identities=14%  Similarity=0.074  Sum_probs=181.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCe-EEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNS-HYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~-~~ivmEy   90 (334)
                      +++++.+++++++..+..+++|.+.........+....+|+.++++++||||        |.+++.|..++. ++|||+|
T Consensus        14 ~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~i--------v~y~ds~~~~~~~l~Ivm~Y   85 (426)
T KOG0589|consen   14 RGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNI--------VEYKDSFEEDGQLLCIVMEY   85 (426)
T ss_pred             ccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCe--------eeeccchhcCCceEEEEEee
Confidence            6788899999999999999999999988755566677889999999999999        999999998887 9999999


Q ss_pred             cCCC-hhHHhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISR-SKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~-~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+|| +..++. .+...+   .++.+..|+.|++.|+.|||++.                |+|||||++||++++++.||
T Consensus        86 ~eGg~l~~~i~~~k~~~f---~E~~i~~~~~Q~~~av~ylH~~~----------------iLHRDlK~~Nifltk~~~Vk  146 (426)
T KOG0589|consen   86 CEGGDLAQLIKEQKGVLF---PEERILKWFVQILLAVNYLHENR----------------VLHRDLKCANIFLTKDKKVK  146 (426)
T ss_pred             cCCCCHHHHHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhhh----------------hhcccchhhhhhccccCcee
Confidence            9999 444434 332333   66778899999999999999988                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+|+.+....  ..+..||+.||.||+. +..|. ++|+|+   |+||+ +....+|.+.+....-..+......+
T Consensus       147 LgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm-~~lk~aF~a~~m~~Li~ki~~~~~~P  225 (426)
T KOG0589|consen  147 LGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEM-CTLKPAFKASNMSELILKINRGLYSP  225 (426)
T ss_pred             ecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHH-HhcccccCccchHHHHHHHhhccCCC
Confidence            99999999988874  5667899999999984 45555 566666   66666 44555788887665555566666666


Q ss_pred             cccccccHhHHHH-HHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQC-VQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~-i~~~~~~~p~~r~~~~  270 (334)
                      .+..++  .+... +...+..+|..|++..
T Consensus       226 lp~~ys--~el~~lv~~~l~~~P~~RPsa~  253 (426)
T KOG0589|consen  226 LPSMYS--SELRSLVKSMLRKNPEHRPSAL  253 (426)
T ss_pred             CCcccc--HHHHHHHHHHhhcCCccCCCHH
Confidence            665555  23333 3334455666666543

>KOG0201|consensus

Probab=99.97  E-value=6.4e-32  Score=247.83  Aligned_cols=228  Identities=15%  Similarity=0.094  Sum_probs=171.0

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      -|++++.||+|.+..|++.||||++.....++.. ..+++|+.++..++++||        .++|+.|..+..+||+|||
T Consensus        22 grGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deI-ediqqei~~Ls~~~~~~i--------t~yygsyl~g~~LwiiMey   92 (467)
T KOG0201|consen   22 GRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEI-EDIQQEISVLSQCDSPNI--------TEYYGSYLKGTKLWIIMEY   92 (467)
T ss_pred             cccccceeeeeeeccccceEEEEEechhhcchhh-HHHHHHHHHHHhcCcchH--------HhhhhheeecccHHHHHHH
Confidence            4899999999999999999999999987765433 367789999999999999        9999999999999999999


Q ss_pred             cCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |.||  ++.+.....  +   .+..+..++.+++.||.|||.++                .+|||||++|||+..+|.||
T Consensus        93 ~~gGsv~~lL~~~~~--~---~E~~i~~ilre~l~~l~ylH~~~----------------kiHrDIKaanil~s~~g~vk  151 (467)
T KOG0201|consen   93 CGGGSVLDLLKSGNI--L---DEFEIAVILREVLKGLDYLHSEK----------------KIHRDIKAANILLSESGDVK  151 (467)
T ss_pred             hcCcchhhhhccCCC--C---ccceeeeehHHHHHHhhhhhhcc----------------eecccccccceeEeccCcEE
Confidence            9999  555433332  1   33344455679999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||.+..+....  ..++.||+++|+|||.. .+| .++|+|+   +++|+ +.+.+|+.........- ++.....+
T Consensus       152 l~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEl-a~GePP~s~~hPmrvlf-lIpk~~PP  229 (467)
T KOG0201|consen  152 LADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIEL-AKGEPPHSKLHPMRVLF-LIPKSAPP  229 (467)
T ss_pred             EEecceeeeeechhhccccccccccccchhhhccccccchhhhhhhhHHHHHH-hcCCCCCcccCcceEEE-eccCCCCC
Confidence            99999998776654  46789999999999843 344 5677777   55555 55666765554322222 22222222


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .-.+.+...-+.++..++.++|..|.++.
T Consensus       230 ~L~~~~S~~~kEFV~~CL~k~P~~RpsA~  258 (467)
T KOG0201|consen  230 RLDGDFSPPFKEFVEACLDKNPEFRPSAK  258 (467)
T ss_pred             ccccccCHHHHHHHHHHhhcCcccCcCHH
Confidence            22222221245667777777777777755

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.97  E-value=1.3e-30  Score=242.70  Aligned_cols=227  Identities=17%  Similarity=0.156  Sum_probs=165.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.++.+|+.||||++++... .......+.+|+++++.++||||        +++++++..++.+|+||||
T Consensus         5 ~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i--------~~~~~~~~~~~~~~lv~e~   76 (323)
T cd05571           5 KGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFL--------TALKYSFQTHDRLCFVMEY   76 (323)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCC--------CCEEEEEEcCCEEEEEEeC
Confidence            47788999999999999999999986543 22234467789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +...... ...+   ....+..++.||+.||.|||+.+                |+||||||+|||++.++.+||
T Consensus        77 ~~~~~L~~~l~~-~~~~---~~~~~~~~~~qi~~~L~~lH~~~----------------ivHrDlkp~NIll~~~~~~kl  136 (323)
T cd05571          77 ANGGELFFHLSR-ERVF---SEDRARFYGAEIVSALGYLHSCD----------------VVYRDLKLENLMLDKDGHIKI  136 (323)
T ss_pred             CCCCcHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEeCCCCHHHEEECCCCCEEE
Confidence            9998 4222222 1223   34445566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||+++......  ....+||+.|++||+.. .. +..+|+|+   ++|++ .++..||.+.+.......+..... ..
T Consensus       137 ~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el-ltg~~Pf~~~~~~~~~~~~~~~~~-~~  214 (323)
T cd05571         137 TDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEM-MCGRLPFYNQDHEKLFELILMEEI-RF  214 (323)
T ss_pred             eeCCCCcccccCCCcccceecCccccChhhhcCCCCCccccCcccchhhhhh-hcCCCCCCCCCHHHHHHHHHcCCC-CC
Confidence            9999998543222  33457899999999853 33 44566666   55555 556778876554333333333322 22


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      +..+. ......+...+..||..|++.
T Consensus       215 p~~~~-~~~~~li~~~L~~dP~~R~~~  240 (323)
T cd05571         215 PRTLS-PEAKSLLAGLLKKDPKQRLGG  240 (323)
T ss_pred             CCCCC-HHHHHHHHHHccCCHHHcCCC
Confidence            22222 245567777778899999853

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.97  E-value=1.6e-30  Score=242.71  Aligned_cols=228  Identities=17%  Similarity=0.158  Sum_probs=165.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||++.++.+|+.||||++.+... .......+.+|+++++.++||||        +++++++..++.+|+||||
T Consensus         5 ~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~Ey   76 (328)
T cd05593           5 KGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFL--------TSLKYSFQTKDRLCFVMEY   76 (328)
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCC--------cceEEEEEcCCEEEEEEeC
Confidence            47888999999999999999999986543 23334567789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +...... ...+   ....+..++.||+.||.|||+++                |+||||||+|||++.++.+||
T Consensus        77 ~~~g~L~~~l~~-~~~l---~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDikp~NIll~~~~~~kL  136 (328)
T cd05593          77 VNGGELFFHLSR-ERVF---SEDRTRFYGAEIVSALDYLHSGK----------------IVYRDLKLENLMLDKDGHIKI  136 (328)
T ss_pred             CCCCCHHHHHHh-cCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEecccCHHHeEECCCCcEEE
Confidence            9998 4222221 1223   44455667789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||+++......  ....+||+.|++||+.. .. +..+|+|+   ++|++ ..+..||...+.....+.+..... ..
T Consensus       137 ~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el-ltG~~Pf~~~~~~~~~~~~~~~~~-~~  214 (328)
T cd05593         137 TDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEM-MCGRLPFYNQDHEKLFELILMEDI-KF  214 (328)
T ss_pred             ecCcCCccCCCcccccccccCCcCccChhhhcCCCCCccCCccccchHHHHH-hhCCCCCCCCCHHHHHHHhccCCc-cC
Confidence            9999998643322  23456899999999853 23 45567777   55555 456678866543323333322222 12


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +.... ......+...+..+|..|+++.
T Consensus       215 p~~~~-~~~~~li~~~L~~dP~~R~~~~  241 (328)
T cd05593         215 PRTLS-ADAKSLLSGLLIKDPNKRLGGG  241 (328)
T ss_pred             CCCCC-HHHHHHHHHHcCCCHHHcCCCC
Confidence            22222 2345566777788999998643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.97  E-value=2.2e-30  Score=241.79  Aligned_cols=226  Identities=20%  Similarity=0.199  Sum_probs=164.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++...||+|.++.+|+.||||++++... .....+.+.+|+++++.++||||        +++++++.+++.+|+||||
T Consensus        28 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e~   99 (329)
T PTZ00263         28 TGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFI--------VNMMCSFQDENRVYFLLEF   99 (329)
T ss_pred             ecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCC--------CcEEEEEEcCCEEEEEEcC
Confidence            46778999999999999999999986533 22234567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +....... ..+   .......++.|++.||.|||+++                |+||||||+|||+++++.+||
T Consensus       100 ~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivH~dlkp~NIll~~~~~~kl  159 (329)
T PTZ00263        100 VVGGELFTHLRKA-GRF---PNDVAKFYHAELVLAFEYLHSKD----------------IIYRDLKPENLLLDNKGHVKV  159 (329)
T ss_pred             CCCChHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeecCCCHHHEEECCCCCEEE
Confidence            9988 33222221 223   33444566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccccc
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQ  244 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  244 (334)
                      +|||+++..... .....|++.|++||+.. ..+ ..+|+|+   ++|++ ..+..||.+.+.....+.+..... ..+.
T Consensus       160 ~Dfg~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el-ltg~~pf~~~~~~~~~~~i~~~~~-~~p~  236 (329)
T PTZ00263        160 TDFGFAKKVPDR-TFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEF-IAGYPPFFDDTPFRIYEKILAGRL-KFPN  236 (329)
T ss_pred             eeccCceEcCCC-cceecCChhhcCHHHHcCCCCCCcceeechHHHHHHH-HcCCCCCCCCCHHHHHHHHhcCCc-CCCC
Confidence            999999876543 33457899999999843 333 4566666   55555 556778866553322232222221 1221


Q ss_pred             ccccHhHHHHHHHhhccCchhhcCC
Q psy6542         245 DLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       245 ~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      . .+......+...+..||..|++.
T Consensus       237 ~-~~~~~~~li~~~L~~dP~~R~~~  260 (329)
T PTZ00263        237 W-FDGRARDLVKGLLQTDHTKRLGT  260 (329)
T ss_pred             C-CCHHHHHHHHHHhhcCHHHcCCC
Confidence            1 12234556667777899999875

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3e-30  Score=238.98  Aligned_cols=227  Identities=17%  Similarity=0.160  Sum_probs=164.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.+..+++.||||++++... .......+.+|+.+++.++||||        +++++++.+++.+|+||||
T Consensus         3 ~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~   74 (312)
T cd05585           3 KGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFI--------VPLKFSFQSPEKLYLVLAF   74 (312)
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcE--------eceeeEEecCCeEEEEEcC
Confidence            57788999999999999999999986432 23334567789999999999999        9999999999999999999


Q ss_pred             cCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++|+ + +.+...  ..+   .......++.|++.||.|||+++                |+||||||+|||++.++.+|
T Consensus        75 ~~~g~L~~~l~~~--~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~HrDlkp~Nili~~~~~~k  133 (312)
T cd05585          75 INGGELFHHLQRE--GRF---DLSRARFYTAELLCALENLHKFN----------------VIYRDLKPENILLDYQGHIA  133 (312)
T ss_pred             CCCCcHHHHHHhc--CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEeCCCCHHHeEECCCCcEE
Confidence            9998 4 333222  233   33444566779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh--hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |+|||+++......  ....+||+.|++||+.. .. ...+|+|+  ++.+.+..+..||.+.+.....+.+..... ..
T Consensus       134 l~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~~~~-~~  212 (312)
T cd05585         134 LCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPL-RF  212 (312)
T ss_pred             EEECcccccCccCCCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCC-CC
Confidence            99999998543322  33457899999999843 23 44567777  444444566778876553322222222211 12


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      +... +......+..++..||..|++.
T Consensus       213 ~~~~-~~~~~~li~~~L~~dp~~R~~~  238 (312)
T cd05585         213 PDGF-DRDAKDLLIGLLSRDPTRRLGY  238 (312)
T ss_pred             CCcC-CHHHHHHHHHHcCCCHHHcCCC
Confidence            2122 2244566777778899999864

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0586|consensus

Probab=99.97  E-value=2.1e-30  Score=246.67  Aligned_cols=228  Identities=19%  Similarity=0.214  Sum_probs=179.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .+.+..|.+|.+..||..||||++.+...+....+.+.+|+++|+.++||||        |++|.+..+...+|+||||+
T Consensus        66 ~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnI--------vkl~~v~~t~~~lylV~eya  137 (596)
T KOG0586|consen   66 KGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNI--------VKLFSVIETEATLYLVMEYA  137 (596)
T ss_pred             cceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcce--------eeeeeeeeecceeEEEEEec
Confidence            3566799999999999999999999999866666668999999999999999        99999999999999999999


Q ss_pred             CCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .||  .+++..+.  +..+   .....++.|+++|++|||+++                |+|||||++||||+.+..+||
T Consensus       138 ~~ge~~~yl~~~g--r~~e---~~ar~~F~q~vsaveYcH~k~----------------ivHrdLk~eNilL~~~mnikI  196 (596)
T KOG0586|consen  138 SGGELFDYLVKHG--RMKE---KEARAKFRQIVSAVEYCHSKN----------------IVHRDLKAENILLDENMNIKI  196 (596)
T ss_pred             cCchhHHHHHhcc--cchh---hhhhhhhHHHHHHHHHHhhcc----------------eeccccchhhcccccccceee
Confidence            999  56665543  2222   333445569999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-CCccccCcccccccc---ccccCCcceeeh--hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         170 SDLGLACDFSKKK-PHASVESDCILHGYI---KKLGGPFVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       170 ~DFGla~~~~~~~-~~~~~~t~~~~~~~v---~~~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      +|||++..+.... ..+.||++.|.+||+   ..+.++..|.|+  .+.+.+..+.+||.|...-.+.+-.+.+.+. ++
T Consensus       197 aDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~gk~r-Ip  275 (596)
T KOG0586|consen  197 ADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRGKYR-IP  275 (596)
T ss_pred             eccccceeecccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccccchheeeeec-cc
Confidence            9999999887654 467899999999998   345577888888  5555567889999988866555544444332 33


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      -.+.. ...+.+...+..+|..|.++.
T Consensus       276 ~~ms~-dce~lLrk~lvl~Pskr~~~d  301 (596)
T KOG0586|consen  276 FYMSC-DCEDLLRKFLVLNPSKRGPCD  301 (596)
T ss_pred             ceeec-hhHHHHHHhhccCccccCCHH
Confidence            22221 233445555567888887776

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.97  E-value=2.3e-30  Score=244.89  Aligned_cols=187  Identities=18%  Similarity=0.210  Sum_probs=145.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||++++... +......+.+|+.+++.++|+||        +++++.+.+++.+|+||||
T Consensus        11 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~i--------v~~~~~~~~~~~~~lv~E~   82 (363)
T cd05628          11 RGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWV--------VKMFYSFQDKLNLYLIMEF   82 (363)
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCc--------ceEEEEEecCCeEEEEEcC
Confidence            57788999999999999999999986543 33344567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.+||
T Consensus        83 ~~gg~L~~~l~~~-~~l---~~~~~~~~~~qi~~aL~~lH~~g----------------ivHrDlKp~NILi~~~~~vkL  142 (363)
T cd05628          83 LPGGDMMTLLMKK-DTL---TEEETQFYIAETVLAIDSIHQLG----------------FIHRDIKPDNLLLDSKGHVKL  142 (363)
T ss_pred             CCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEecCCCHHHeEECCCCCEEE
Confidence            9988 43332222 233   34445566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-------------------------------------CCccccCccccccccc-cccCC-cceeeh-
Q psy6542         170 SDLGLACDFSKKK-------------------------------------PHASVESDCILHGYIK-KLGGP-FVSAWQ-  209 (334)
Q Consensus       170 ~DFGla~~~~~~~-------------------------------------~~~~~~t~~~~~~~v~-~~~~~-~~~~w~-  209 (334)
                      +|||+|+......                                     ....+||+.|++||+. ..+++ .+|+|+ 
T Consensus       143 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSl  222 (363)
T cd05628         143 SDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSL  222 (363)
T ss_pred             eeccCcccccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhh
Confidence            9999997543211                                     1234789999999984 33344 455555 


Q ss_pred             --hHHHHHcCCCCCCCCCCC
Q psy6542         210 --TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       210 --~~~~~l~~~~~~~~~~~~  227 (334)
                        ++|++ ..+.+||.+.+.
T Consensus       223 Gvil~el-l~G~~Pf~~~~~  241 (363)
T cd05628         223 GVIMYEM-LIGYPPFCSETP  241 (363)
T ss_pred             HHHHHHH-HhCCCCCCCCCH
Confidence              55555 456778876653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.97  E-value=3.3e-30  Score=239.97  Aligned_cols=227  Identities=17%  Similarity=0.164  Sum_probs=165.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||++.++.+|+.||+|+++.... .......+.+|+++++.++||||        +++++++..++.+|+||||
T Consensus         5 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i--------~~~~~~~~~~~~~~lv~E~   76 (323)
T cd05595           5 KGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFL--------TALKYAFQTHDRLCFVMEY   76 (323)
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCC--------cceeeEEecCCEEEEEEeC
Confidence            47889999999999999999999986533 22234466789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +...... ...+   ....+..++.||+.||.|||+++                |+||||||+|||+++++.+||
T Consensus        77 ~~~~~L~~~l~~-~~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivH~Dlkp~NIll~~~~~~kL  136 (323)
T cd05595          77 ANGGELFFHLSR-ERVF---TEERARFYGAEIVSALEYLHSRD----------------VVYRDIKLENLMLDKDGHIKI  136 (323)
T ss_pred             CCCCcHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEecCCCHHHEEEcCCCCEEe
Confidence            9998 4322222 1223   44555667779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||+++......  .....|++.|++||+.. .. ...+|+|+   ++|+++ ++..||...+.......+..... ..
T Consensus       137 ~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell-~g~~Pf~~~~~~~~~~~~~~~~~-~~  214 (323)
T cd05595         137 TDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM-CGRLPFYNQDHERLFELILMEEI-RF  214 (323)
T ss_pred             cccHHhccccCCCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHH-hCCCCCCCCCHHHHHHHHhcCCC-CC
Confidence            9999998643322  23456899999999853 22 44567777   556655 46668766554333333322222 12


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      +..+. ......+..++..+|..|+..
T Consensus       215 p~~~~-~~~~~li~~~L~~dP~~R~~~  240 (323)
T cd05595         215 PRTLS-PEAKSLLAGLLKKDPKQRLGG  240 (323)
T ss_pred             CCCCC-HHHHHHHHHHccCCHHHhCCC
Confidence            22222 234567777778899999854

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.97  E-value=1.5e-29  Score=231.18  Aligned_cols=188  Identities=16%  Similarity=0.157  Sum_probs=146.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc-hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE-SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~-~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++...||+|.++.+|+.||||.+.+.... ......+.+|+++++.++|+|+        +++++++.+++.+|+||||
T Consensus        10 ~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i--------v~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631          10 KGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFV--------VSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             cCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcE--------EEEEEEEccCCeEEEEEEe
Confidence            467889999999999999999999865432 2233456789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      +.|+ +...... ....+   .....+.++.|++.||.|||+++                |+||||||+|||+++++.+|
T Consensus        82 ~~~g~L~~~~~~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------iiH~dikp~Nill~~~~~~k  142 (285)
T cd05631          82 MNGGDLKFHIYNMGNPGF---DEQRAIFYAAELCCGLEDLQRER----------------IVYRDLKPENILLDDRGHIR  142 (285)
T ss_pred             cCCCcHHHHHHhhCCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EEeCCCCHHHEEECCCCCEE
Confidence            9988 4333222 11122   44555677789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC-CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP-HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       169 l~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      |+|||++........ ....|+..|++||+..  ..+..+|+|+   ++|++ ..+..||.+...
T Consensus       143 l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el-~~g~~pf~~~~~  206 (285)
T cd05631         143 ISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEM-IQGQSPFRKRKE  206 (285)
T ss_pred             EeeCCCcEEcCCCCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHH-HhCCCCCCCCCc
Confidence            999999987654332 3456899999999853  2344567777   55555 457778876553

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.97  E-value=5.2e-30  Score=238.74  Aligned_cols=227  Identities=17%  Similarity=0.159  Sum_probs=164.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.+..+|+.||+|++++... .......+..|+++++.++||||        +++++++..++.+|+||||
T Consensus         5 ~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i--------~~~~~~~~~~~~~~lv~E~   76 (325)
T cd05594           5 KGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFL--------TALKYSFQTHDRLCFVMEY   76 (325)
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCC--------CceEEEEEcCCEEEEEEeC
Confidence            57788999999999999999999986533 22233456779999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++|+ +...... ...+   ....+..++.||+.||.|||+ .+                |+||||||+|||+++++.+|
T Consensus        77 ~~~~~L~~~l~~-~~~l---~~~~~~~~~~qi~~aL~~lH~~~~----------------ivHrDikp~NIll~~~~~~k  136 (325)
T cd05594          77 ANGGELFFHLSR-ERVF---SEDRARFYGAEIVSALDYLHSEKN----------------VVYRDLKLENLMLDKDGHIK  136 (325)
T ss_pred             CCCCcHHHHHHh-cCCC---CHHHHHHHHHHHHHHHHHHHhcCC----------------EEecCCCCCeEEECCCCCEE
Confidence            9998 4322221 1223   445556677899999999997 78                99999999999999999999


Q ss_pred             EEecccccccCCC--CCCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKK--KPHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++.....  ......||+.|++||+.. . .+..+|+|+   ++|++ .++..||.+.+.....+.+..... .
T Consensus       137 L~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el-~tG~~Pf~~~~~~~~~~~i~~~~~-~  214 (325)
T cd05594         137 ITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEM-MCGRLPFYNQDHEKLFELILMEEI-R  214 (325)
T ss_pred             EecCCCCeecCCCCcccccccCCcccCCHHHHccCCCCCccccccccceeeee-ccCCCCCCCCCHHHHHHHHhcCCC-C
Confidence            9999999754322  223456899999999853 2 245667777   44554 556778866554333333322222 1


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      .+.... ......+...+..||..|+..
T Consensus       215 ~p~~~~-~~~~~li~~~L~~dP~~R~~~  241 (325)
T cd05594         215 FPRTLS-PEAKSLLSGLLKKDPKQRLGG  241 (325)
T ss_pred             CCCCCC-HHHHHHHHHHhhcCHHHhCCC
Confidence            222222 134556777778899999854

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG4717|consensus

Probab=99.97  E-value=2.2e-30  Score=241.39  Aligned_cols=228  Identities=19%  Similarity=0.227  Sum_probs=183.9

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      +-+--|.+|++--||..||||++.+.+.+....-++.+|++-|+.++||||        |++|.+..++..+|+|+|+-+
T Consensus        29 GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNi--------VRLYEViDTQTKlyLiLELGD  100 (864)
T KOG4717|consen   29 GHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNI--------VRLYEVIDTQTKLYLILELGD  100 (864)
T ss_pred             CceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCe--------eeeeehhcccceEEEEEEecC
Confidence            344568899999999999999999999987777788999999999999999        999999999999999999999


Q ss_pred             CC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-CCCEEE
Q psy6542          93 GP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-HGHVRI  169 (334)
Q Consensus        93 g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-~~~vkl  169 (334)
                      ||  .|+|..+. ..+.+..++   .++.||+.|+.|||...                ++||||||+|+.+-. -|.|||
T Consensus       101 ~GDl~DyImKHe-~Gl~E~La~---kYF~QI~~AI~YCHqLH----------------VVHRDLKPENVVFFEKlGlVKL  160 (864)
T KOG4717|consen  101 GGDLFDYIMKHE-EGLNEDLAK---KYFAQIVHAISYCHQLH----------------VVHRDLKPENVVFFEKLGLVKL  160 (864)
T ss_pred             CchHHHHHHhhh-ccccHHHHH---HHHHHHHHHHHHHhhhh----------------hhcccCCcceeEEeeecCceEe
Confidence            97  67776665 345444444   44559999999999999                999999999998754 589999


Q ss_pred             EecccccccCCCCC-CccccCcccccccccc---ccCCcceeeh--hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         170 SDLGLACDFSKKKP-HASVESDCILHGYIKK---LGGPFVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       170 ~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~---~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      +|||++-.+..+.. .++||+..|.+||++.   +..|..|+|+  ++.+|+.++++||.-.++.+....| +..-+++|
T Consensus       161 TDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmI-mDCKYtvP  239 (864)
T KOG4717|consen  161 TDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMI-MDCKYTVP  239 (864)
T ss_pred             eeccccccCCCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhh-hcccccCc
Confidence            99999998887764 6789999999999853   3466788888  7788889999999888776555544 34445566


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .-.+. ..++.|..++.+||+.|-+-+
T Consensus       240 shvS~-eCrdLI~sMLvRdPkkRAslE  265 (864)
T KOG4717|consen  240 SHVSK-ECRDLIQSMLVRDPKKRASLE  265 (864)
T ss_pred             hhhhH-HHHHHHHHHHhcCchhhccHH
Confidence            44442 334456666789999987643

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.8e-30  Score=236.80  Aligned_cols=227  Identities=16%  Similarity=0.204  Sum_probs=163.1

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .+++...||+|.++.+|+.||||++..... +....+.+.+|+++++.++||||        +++++++.+++.+|+|||
T Consensus        10 g~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e   81 (291)
T cd05612          10 GTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFI--------IRLFWTEHDQRFLYMLME   81 (291)
T ss_pred             ecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcH--------hhhHhhhccCCeEEEEEe
Confidence            357788999999999999999999986443 22334567889999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +....... ..+   .......++.|++.||.|||+++                |+||||||+|||+++++.+|
T Consensus        82 ~~~~~~L~~~~~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dlkp~NIli~~~~~~k  141 (291)
T cd05612          82 YVPGGELFSYLRNS-GRF---SNSTGLFYASEIVCALEYLHSKE----------------IVYRDLKPENILLDKEGHIK  141 (291)
T ss_pred             CCCCCCHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeecCCCHHHeEECCCCCEE
Confidence            99988 43332221 123   34445567789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         169 ISDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      |+|||+++..... .....|++.|++||+.. .. ...+|+|+   ++|++ .++..||.+.+.....+.+..... ..+
T Consensus       142 l~Dfg~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l-~~g~~pf~~~~~~~~~~~i~~~~~-~~~  218 (291)
T cd05612         142 LTDFGFAKKLRDR-TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEM-LVGYPPFFDDNPFGIYEKILAGKL-EFP  218 (291)
T ss_pred             EEecCcchhccCC-cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHhCCc-CCC
Confidence            9999999876543 33456899999999843 33 44566666   55555 556667766543222222222211 122


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCC
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      ..+ +....+.+...+..||..|+++
T Consensus       219 ~~~-~~~~~~li~~~l~~dp~~R~~~  243 (291)
T cd05612         219 RHL-DLYAKDLIKKLLVVDRTRRLGN  243 (291)
T ss_pred             ccC-CHHHHHHHHHHcCCCHHHccCC
Confidence            122 1133456666667788888764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=2.4e-30  Score=241.48  Aligned_cols=186  Identities=17%  Similarity=0.153  Sum_probs=141.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC-----CeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP-----NSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~-----~~~~i   86 (334)
                      +++...||+|.++.+|+.||||.+............+.+|+++++.++||||        +++++++...     ..+|+
T Consensus        10 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~~~~~~l   81 (338)
T cd07859          10 KGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDI--------VEIKHIMLPPSRREFKDIYV   81 (338)
T ss_pred             ecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCE--------eeecceEeccCCCCCceEEE
Confidence            5678899999999999999999998544333334467889999999999999        9999887633     35899


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||+.+++....... ..+   .......++.||+.||.|||+++                |+||||||+|||++.++.
T Consensus        82 v~e~~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~dlkp~NIll~~~~~  141 (338)
T cd07859          82 VFELMESDLHQVIKAN-DDL---TPEHHQFFLYQLLRALKYIHTAN----------------VFHRDLKPKNILANADCK  141 (338)
T ss_pred             EEecCCCCHHHHHHhc-ccC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHeEECCCCc
Confidence            9999988754332321 122   44555667789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC-----CccccCcccccccccc----ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKP-----HASVESDCILHGYIKK----LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~----~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +||+|||+++.......     ....|++.|++||+..    ..+..+|+|+   ++|++ .++.+||.+.+
T Consensus       142 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el-~tg~~pf~~~~  212 (338)
T cd07859         142 LKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEV-LTGKPLFPGKN  212 (338)
T ss_pred             EEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHH-HcCCCCCCCCC
Confidence            99999999986533221     2346889999999843    2344567777   55555 45677886654

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.97  E-value=9.8e-30  Score=242.10  Aligned_cols=186  Identities=18%  Similarity=0.194  Sum_probs=142.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+++.||||++.+... .......+.+|+++++.++|+||        +++++++.+++.+|+||||
T Consensus        11 ~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~i--------v~~~~~~~~~~~~~lv~E~   82 (382)
T cd05625          11 IGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWV--------VRLYYSFQDKDNLYFVMDY   82 (382)
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcC--------CeEEEEEEeCCEEEEEEeC
Confidence            57888999999999999999999986433 23344577889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+|| +..+.... ..+   .+..+..++.||+.||.|||+++                |+||||||+|||++.+|.+||
T Consensus        83 ~~gg~L~~~l~~~-~~~---~e~~~~~~~~qi~~al~~lH~~~----------------ivHrDlKp~NILl~~~g~~kL  142 (382)
T cd05625          83 IPGGDMMSLLIRM-GIF---PEDLARFYIAELTCAVESVHKMG----------------FIHRDIKPDNILIDRDGHIKL  142 (382)
T ss_pred             CCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEECCCCCEEE
Confidence            9998 43332221 223   33444556679999999999999                999999999999999999999


Q ss_pred             EecccccccCCC-------------------------------------------------CCCccccCccccccccc-c
Q psy6542         170 SDLGLACDFSKK-------------------------------------------------KPHASVESDCILHGYIK-K  199 (334)
Q Consensus       170 ~DFGla~~~~~~-------------------------------------------------~~~~~~~t~~~~~~~v~-~  199 (334)
                      +|||+|+.+...                                                 .....+||+.|++||+. .
T Consensus       143 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~  222 (382)
T cd05625         143 TDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLR  222 (382)
T ss_pred             eECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcC
Confidence            999998633110                                                 01234689999999984 3


Q ss_pred             ccC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         200 LGG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       200 ~~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ..+ ..+|+|+   ++|+++ .+.+||.+.+
T Consensus       223 ~~~~~~~DiwSlGvil~ell-tG~~Pf~~~~  252 (382)
T cd05625         223 TGYTQLCDWWSVGVILYEML-VGQPPFLAQT  252 (382)
T ss_pred             CCCCCeeeEEechHHHHHHH-hCCCCCCCCC
Confidence            334 4555555   556655 5677887654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=8.6e-30  Score=240.73  Aligned_cols=187  Identities=19%  Similarity=0.227  Sum_probs=145.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++...||+|.++.+|+.||||+++.... .......+.+|+++++.++||||        +++++++.+++.+|+||||
T Consensus        11 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~i--------v~~~~~~~~~~~~~lv~E~   82 (364)
T cd05599          11 RGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWV--------VKLYYSFQDENYLYLIMEY   82 (364)
T ss_pred             ecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCC--------cceEEEEEcCCeEEEEECC
Confidence            46778999999999999999999986533 23344567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +..+.... ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.+||
T Consensus        83 ~~~g~L~~~l~~~-~~l---~~~~~~~~~~qi~~aL~~lH~~~----------------ivH~Dlkp~NIl~~~~~~~kl  142 (364)
T cd05599          83 LPGGDMMTLLMKK-DTF---TEEETRFYIAETILAIDSIHKLG----------------YIHRDIKPDNLLLDAKGHIKL  142 (364)
T ss_pred             CCCcHHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEeccCCHHHeEECCCCCEEE
Confidence            9998 43332322 233   44445566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC----------------------------------------CCccccCccccccccc-ccc-CCccee
Q psy6542         170 SDLGLACDFSKKK----------------------------------------PHASVESDCILHGYIK-KLG-GPFVSA  207 (334)
Q Consensus       170 ~DFGla~~~~~~~----------------------------------------~~~~~~t~~~~~~~v~-~~~-~~~~~~  207 (334)
                      +|||++..+....                                        ....+||+.|++||+. ..+ +..+|+
T Consensus       143 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  222 (364)
T cd05599         143 SDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDW  222 (364)
T ss_pred             eecccceeccccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeee
Confidence            9999997543221                                        1124689999999984 333 455667


Q ss_pred             eh--hHHHHHcCCCCCCCCCC
Q psy6542         208 WQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       208 w~--~~~~~l~~~~~~~~~~~  226 (334)
                      |+  ++.+.|..+.+||.+.+
T Consensus       223 wSlG~il~el~~G~~Pf~~~~  243 (364)
T cd05599         223 WSLGVIMYEMLVGYPPFCSDN  243 (364)
T ss_pred             ecchhHHHHhhcCCCCCCCCC
Confidence            77  44444456777887655

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.97  E-value=9.6e-30  Score=241.34  Aligned_cols=187  Identities=17%  Similarity=0.156  Sum_probs=147.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||++.++.+++.||+|++.+... .....+.+.+|+.+++.++||||        +++++++.+++.+|+||||
T Consensus        53 ~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~i--------v~~~~~~~~~~~~~lv~Ey  124 (370)
T cd05621          53 RGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWV--------VQLFCAFQDDKYLYMVMEY  124 (370)
T ss_pred             ecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCE--------eeEEEEEEcCCEEEEEEcC
Confidence            57788999999999999999999976433 22234467789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+....  .+   .......++.||+.||.|||+++                |+||||||+|||+++++.+||
T Consensus       125 ~~gg~L~~~l~~~--~~---~~~~~~~~~~qil~aL~~LH~~~----------------IvHrDLKp~NILl~~~~~~kL  183 (370)
T cd05621         125 MPGGDLVNLMSNY--DV---PEKWAKFYTAEVVLALDAIHSMG----------------LIHRDVKPDNMLLDKHGHLKL  183 (370)
T ss_pred             CCCCcHHHHHHhc--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEecCCCHHHEEECCCCCEEE
Confidence            9988 44333321  22   34445567779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC---CCccccCccccccccccc------cCCcceeeh---hHHHHHcCCCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK---PHASVESDCILHGYIKKL------GGPFVSAWQ---TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       170 ~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~~------~~~~~~~w~---~~~~~l~~~~~~~~~~~~~  228 (334)
                      +|||+|.......   .....||+.|++||+...      .+..+|+|+   ++|++ ..+.+||.+.+..
T Consensus       184 ~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyel-l~G~~Pf~~~~~~  253 (370)
T cd05621         184 ADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEM-LVGDTPFYADSLV  253 (370)
T ss_pred             EecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHH-HhCCCCCCCCCHH
Confidence            9999998765432   235678999999998532      234667777   55565 4577788776643

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.97  E-value=4.4e-30  Score=235.06  Aligned_cols=187  Identities=16%  Similarity=0.116  Sum_probs=142.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.++.+++.||+|.++...... ....+.+|+++++.++||||        +++++++.+.+.+|+||||+
T Consensus        15 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~lv~e~~   85 (288)
T cd07871          15 EGTYATVFKGRSKLTENLVALKEIRLEHEEG-APCTAIREVSLLKNLKHANI--------VTLHDIIHTERCLTLVFEYL   85 (288)
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEecccccCC-cchhHHHHHHHHHhCCCCCE--------eeEEEEEcCCCeEEEEEeCC
Confidence            5677899999999999999999997654321 23356679999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      +|++...........   ....+..++.||+.||.|||+++                |+||||||+|||++.++.+||+|
T Consensus        86 ~~~l~~~l~~~~~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivH~dlkp~Nil~~~~~~~kl~D  146 (288)
T cd07871          86 DSDLKQYLDNCGNLM---SMHNVKIFMFQLLRGLSYCHKRK----------------ILHRDLKPQNLLINEKGELKLAD  146 (288)
T ss_pred             CcCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCHHHEEECCCCCEEECc
Confidence            988533322221122   34455667779999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC--CCccccCcccccccccc--cc-CCcceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         172 LGLACDFSKKK--PHASVESDCILHGYIKK--LG-GPFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       172 FGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~-~~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      ||+++......  .....+++.|++||+..  .. +..+|+|+  ++.+.+.++.+||.+.+
T Consensus       147 fG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~  208 (288)
T cd07871         147 FGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGST  208 (288)
T ss_pred             CcceeeccCCCccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99998654332  23346788999999743  22 44566666  44444455667876654

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG1989|consensus

Probab=99.97  E-value=1e-29  Score=250.76  Aligned_cols=189  Identities=14%  Similarity=0.085  Sum_probs=152.5

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEee----cC---C
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTS----EP---N   82 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~----~~---~   82 (334)
                      +.|++-.||+|.+...|..||+|.+-..  +....+...+|+++|++|+ |+||        |.++|...    .+   -
T Consensus        46 AEGGFa~VYla~~~~~~~~~AlKrm~~~--de~~L~~v~~EI~~MK~L~gh~nI--------V~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   46 AEGGFAQVYLAQDVKGGKKYALKRMYVN--DEEALNAVKREIDIMKLLSGHKNI--------VSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             ccCCcEEEEEEEecCCCceeeeeeeecC--CHHHHHHHHHHHHHHHHhcCCCce--------eeEeccccccccCCCcee
Confidence            4689999999999998899999998866  4445667889999999998 9999        99999322    11   3


Q ss_pred             eEEEEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCcee
Q psy6542          83 SHYIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANIL  160 (334)
Q Consensus        83 ~~~ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiL  160 (334)
                      .++|.||||.||  .|++..+...++   .+..++.|++|+++|+.+||...              |||||||||-||||
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rlq~~l---te~eVLkIf~dv~~AVa~mH~~~--------------pPiIHRDLKiENvL  178 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRLQTRL---TEDEVLKIFYDVCEAVAAMHYLK--------------PPIIHRDLKIENVL  178 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHHhccC---ChHHHHHHHHHHHHHHHHHhcCC--------------CccchhhhhhhheE
Confidence            589999999965  677755443343   67888999999999999999987              88999999999999


Q ss_pred             eCCCCCEEEEecccccccCCCC-----------CCccccCcccccccccccc-----CCcceeeh--hHHHHHcCCCCCC
Q psy6542         161 LDEHGHVRISDLGLACDFSKKK-----------PHASVESDCILHGYIKKLG-----GPFVSAWQ--TRYAKLFPNRLEL  222 (334)
Q Consensus       161 l~~~~~vkl~DFGla~~~~~~~-----------~~~~~~t~~~~~~~v~~~~-----~~~~~~w~--~~~~~l~~~~~~~  222 (334)
                      |+.+|+.||||||.|+......           .-...+|+.|-+|||.+.+     +.++|+|.  |++|.|+...+||
T Consensus       179 ls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PF  258 (738)
T KOG1989|consen  179 LSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPF  258 (738)
T ss_pred             EcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCc
Confidence            9999999999999998443222           1123568999999995433     55777777  8888888888898


Q ss_pred             CCCC
Q psy6542         223 HPES  226 (334)
Q Consensus       223 ~~~~  226 (334)
                      ...+
T Consensus       259 e~sg  262 (738)
T KOG1989|consen  259 EESG  262 (738)
T ss_pred             CcCc
Confidence            6543

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.97  E-value=1.5e-29  Score=235.25  Aligned_cols=228  Identities=15%  Similarity=0.129  Sum_probs=164.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++...||+|.++.+|+.||||++++... .......+..|.++++.+ +||||        +++++++.+++.+|+|||
T Consensus         5 ~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i--------~~~~~~~~~~~~~~lv~E   76 (321)
T cd05591           5 KGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFL--------TALHCCFQTKDRLFFVME   76 (321)
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCc--------cceeeEEEcCCeEEEEEe
Confidence            57788999999999999999999986533 222334566788888865 79999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +....... ..+   .......++.|++.||.|||+++                |+||||||+|||++.++.+|
T Consensus        77 ~~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDikp~Nill~~~~~~k  136 (321)
T cd05591          77 YVNGGDLMFQIQRS-RKF---DEPRSRFYAAEVTLALMFLHRHG----------------VIYRDLKLDNILLDAEGHCK  136 (321)
T ss_pred             CCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCCHHHeEECCCCCEE
Confidence            99988 43222221 223   33445567779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++......  .....|++.|++||+.. .. ...+|+|+   ++|++ .++..||.+.+.....+.+...... 
T Consensus       137 L~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el-~tg~~Pf~~~~~~~~~~~i~~~~~~-  214 (321)
T cd05591         137 LADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEM-MAGQPPFEADNEDDLFESILHDDVL-  214 (321)
T ss_pred             EeecccceecccCCccccccccCccccCHHHHcCCCCCCccceechhHHHHHH-hcCCCCCCCCCHHHHHHHHHcCCCC-
Confidence            99999998543222  33456899999999853 23 44567777   55555 5577788776644333333332221 


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.. .+......+...+..+|..|+++.
T Consensus       215 ~p~~-~~~~~~~ll~~~L~~dp~~R~~~~  242 (321)
T cd05591         215 YPVW-LSKEAVSILKAFMTKNPNKRLGCV  242 (321)
T ss_pred             CCCC-CCHHHHHHHHHHhccCHHHcCCCC
Confidence            1211 122345667777788999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.97  E-value=1e-29  Score=236.40  Aligned_cols=228  Identities=16%  Similarity=0.167  Sum_probs=164.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|.++.+++.||||++++... .......+..|..++..+ +||||        +++++++.+.+.+|+|||
T Consensus         5 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i--------v~~~~~~~~~~~~~iv~E   76 (320)
T cd05590           5 KGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFL--------TQLYCCFQTPDRLFFVME   76 (320)
T ss_pred             eCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCch--------hceeeEEEcCCEEEEEEc
Confidence            57788999999999999999999986432 222334556788888776 69999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +...... ...+   .......++.|++.||.|||+++                |+||||||+|||+++++.+|
T Consensus        77 y~~~g~L~~~i~~-~~~l---~~~~~~~~~~ql~~~L~~lH~~~----------------ivH~dlkp~NIli~~~~~~k  136 (320)
T cd05590          77 FVNGGDLMFHIQK-SRRF---DEARARFYAAEITSALMFLHDKG----------------IIYRDLKLDNVLLDHEGHCK  136 (320)
T ss_pred             CCCCchHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEeCCCCHHHeEECCCCcEE
Confidence            99998 4322222 1233   34445567779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCC--CCCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKK--KPHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++.....  ......||+.|++||+.. ..+ ..+|+|+   ++|++ ..+..||.+.+.....+.+...... 
T Consensus       137 L~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el-~~g~~Pf~~~~~~~~~~~i~~~~~~-  214 (320)
T cd05590         137 LADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEM-LCGHAPFEAENEDDLFEAILNDEVV-  214 (320)
T ss_pred             EeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHH-hhCCCCCCCCCHHHHHHHHhcCCCC-
Confidence            9999999854322  234456899999999853 333 4556666   55555 4567788766543333333332221 


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+ ...+....+.+...+..||..|+++.
T Consensus       215 ~~-~~~~~~~~~li~~~L~~dP~~R~~~~  242 (320)
T cd05590         215 YP-TWLSQDAVDILKAFMTKNPTMRLGSL  242 (320)
T ss_pred             CC-CCCCHHHHHHHHHHcccCHHHCCCCC
Confidence            22 11222445667777788999999873

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.97  E-value=3.9e-30  Score=234.73  Aligned_cols=186  Identities=16%  Similarity=0.159  Sum_probs=146.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.++.+++.||||+++.........+.+.+|+++++.++||||        +++++++..++.+|+||||+
T Consensus        11 ~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~   82 (287)
T cd07848          11 EGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENI--------VELKEAFRRRGKLYLVFEYV   82 (287)
T ss_pred             ccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccc--------cchhhhEecCCEEEEEEecC
Confidence            4677899999999999999999998765544455677889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +++ ++.+... ...+   ....+..++.|++.||.|||+.+                |+||||||+||+++.++.+||+
T Consensus        83 ~~~~l~~~~~~-~~~~---~~~~~~~~~~qi~~~L~~lH~~~----------------i~H~dlkp~Nill~~~~~~kl~  142 (287)
T cd07848          83 EKNMLELLEEM-PNGV---PPEKVRSYIYQLIKAIHWCHKND----------------IVHRDIKPENLLISHNDVLKLC  142 (287)
T ss_pred             CCCHHHHHHhc-CCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEEcCCCcEEEe
Confidence            999 4433222 1222   44455667789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC---CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP---HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+++.......   ....|+..|++||+.. .. +..+|+|+   ++|++ ..+.+||.+.+
T Consensus       143 Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el-~~g~~pf~~~~  205 (287)
T cd07848         143 DFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGEL-SDGQPLFPGES  205 (287)
T ss_pred             eccCcccccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHH-HhCCCCCCCCC
Confidence            9999987654322   2346788999999842 23 44566666   55555 45667876654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.3e-29  Score=240.77  Aligned_cols=187  Identities=17%  Similarity=0.179  Sum_probs=143.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++.+.||+|.++.+|+.||||++.+... .....+.+.+|+++++.++||||        +++++++.+++.+|+||||
T Consensus        11 ~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i--------v~~~~~~~~~~~~~lv~E~   82 (377)
T cd05629          11 KGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWV--------VSLYYSFQDAQYLYLIMEF   82 (377)
T ss_pred             ecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCc--------ceEEEEEEcCCeeEEEEeC
Confidence            46778999999999999999999976433 23344567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+... ...+   ....+..++.|++.||.|||+.+                |+||||||+|||++.++.+||
T Consensus        83 ~~gg~L~~~l~~-~~~~---~~~~~~~~~~ql~~aL~~LH~~g----------------ivHrDlkp~NIll~~~~~~kl  142 (377)
T cd05629          83 LPGGDLMTMLIK-YDTF---SEDVTRFYMAECVLAIEAVHKLG----------------FIHRDIKPDNILIDRGGHIKL  142 (377)
T ss_pred             CCCCcHHHHHHh-cCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeccCCCHHHEEECCCCCEEE
Confidence            9888 4333222 1233   33444556779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-------------------------------------------------CCccccCcccccccccc-
Q psy6542         170 SDLGLACDFSKKK-------------------------------------------------PHASVESDCILHGYIKK-  199 (334)
Q Consensus       170 ~DFGla~~~~~~~-------------------------------------------------~~~~~~t~~~~~~~v~~-  199 (334)
                      +|||+++.+....                                                 ....+||+.|++||+.. 
T Consensus       143 ~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  222 (377)
T cd05629         143 SDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQ  222 (377)
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHcc
Confidence            9999996432110                                                 01246899999999843 


Q ss_pred             ccC-Ccceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         200 LGG-PFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       200 ~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      ..+ ..+|+|+   ++|++ .++.+||.+.+.
T Consensus       223 ~~~~~~~DiwSlGvil~el-ltG~~Pf~~~~~  253 (377)
T cd05629         223 QGYGQECDWWSLGAIMFEC-LIGWPPFCSENS  253 (377)
T ss_pred             CCCCCceeeEecchhhhhh-hcCCCCCCCCCH
Confidence            334 4566666   55555 567778876553

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.97  E-value=9.4e-30  Score=240.35  Aligned_cols=189  Identities=19%  Similarity=0.222  Sum_probs=145.4

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .+++.+.||+|.++.+|+.||||+++.... .......+.+|+.++..++|++|        +++++.+.+++.+|+|||
T Consensus        10 G~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------v~~~~~~~~~~~~~lv~E   81 (360)
T cd05627          10 GRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWV--------VKMFYSFQDKRNLYLIME   81 (360)
T ss_pred             eeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCE--------eeEEEEEEcCCEEEEEEe
Confidence            357788999999999999999999986432 23344577889999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +..+.... ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.+|
T Consensus        82 ~~~gg~L~~~l~~~-~~l---~~~~~~~~~~qi~~~L~~lH~~g----------------ivHrDLkp~NIli~~~~~vk  141 (360)
T cd05627          82 FLPGGDMMTLLMKK-DTL---SEEATQFYIAETVLAIDAIHQLG----------------FIHRDIKPDNLLLDAKGHVK  141 (360)
T ss_pred             CCCCccHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEccCCCHHHEEECCCCCEE
Confidence            99998 43332221 223   34445566779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC-------------------------------------CCccccCccccccccc-cccCC-cceeeh
Q psy6542         169 ISDLGLACDFSKKK-------------------------------------PHASVESDCILHGYIK-KLGGP-FVSAWQ  209 (334)
Q Consensus       169 l~DFGla~~~~~~~-------------------------------------~~~~~~t~~~~~~~v~-~~~~~-~~~~w~  209 (334)
                      |+|||+++......                                     ....+||+.|++||+. ..+++ .+|+|+
T Consensus       142 L~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwS  221 (360)
T cd05627         142 LSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWS  221 (360)
T ss_pred             EeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceecc
Confidence            99999987543211                                     1234689999999984 33444 455555


Q ss_pred             ---hHHHHHcCCCCCCCCCCCC
Q psy6542         210 ---TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       210 ---~~~~~l~~~~~~~~~~~~~  228 (334)
                         ++|++ .++.+||.+.+..
T Consensus       222 lGvilyel-~tG~~Pf~~~~~~  242 (360)
T cd05627         222 LGVIMYEM-LIGYPPFCSETPQ  242 (360)
T ss_pred             ccceeeec-ccCCCCCCCCCHH
Confidence               55555 5567788766543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0696|consensus

Probab=99.97  E-value=8e-31  Score=238.84  Aligned_cols=230  Identities=15%  Similarity=0.153  Sum_probs=182.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      ++|.++|-+|..+.|.+.+|||+++++.. .+........|-++|....-|..       .++++..|++-+++|+||||
T Consensus       359 KGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppF-------L~qlHScFQTmDRLyFVMEy  431 (683)
T KOG0696|consen  359 KGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPF-------LVQLHSCFQTMDRLYFVMEY  431 (683)
T ss_pred             cCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCch-------HHHHHHHhhhhhheeeEEEE
Confidence            58899999999999999999999998865 22233455668888888765542       39999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +.||.......+.+.+.+..+   +.++.+|+-||-|||+++                ||.||||.+||+++.+|++||+
T Consensus       432 vnGGDLMyhiQQ~GkFKEp~A---vFYAaEiaigLFFLh~kg----------------IiYRDLKLDNvmLd~eGHiKi~  492 (683)
T KOG0696|consen  432 VNGGDLMYHIQQVGKFKEPVA---VFYAAEIAIGLFFLHSKG----------------IIYRDLKLDNVMLDSEGHIKIA  492 (683)
T ss_pred             ecCchhhhHHHHhcccCCchh---hhhhHHHHHHhhhhhcCC----------------eeeeeccccceEeccCCceEee
Confidence            999944444555556644344   445569999999999999                9999999999999999999999


Q ss_pred             ecccccc--cCCCCCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         171 DLGLACD--FSKKKPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       171 DFGla~~--~~~~~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      |||+++.  +....+.++||||-|++||+. -.+|..+.|||    ++||||+ +++||.|++.+..++.|.-...+ .|
T Consensus       493 DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmla-GQpPFdGeDE~elF~aI~ehnvs-yP  570 (683)
T KOG0696|consen  493 DFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA-GQPPFDGEDEDELFQAIMEHNVS-YP  570 (683)
T ss_pred             ecccccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHc-CCCCCCCCCHHHHHHHHHHccCc-Cc
Confidence            9999984  444556789999999999984 46699999999    6666655 57799999998888887666554 44


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ..++. .+.......+.+.|..|++|-
T Consensus       571 KslSk-EAv~ickg~ltK~P~kRLGcg  596 (683)
T KOG0696|consen  571 KSLSK-EAVAICKGLLTKHPGKRLGCG  596 (683)
T ss_pred             ccccH-HHHHHHHHHhhcCCccccCCC
Confidence            44441 344445556688999999987

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.97  E-value=1.6e-29  Score=237.11  Aligned_cols=227  Identities=18%  Similarity=0.161  Sum_probs=164.0

Q ss_pred             CCCceEEEeceeCCCC-CcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLG-FPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~-~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++...||+|.++.++ ..||+|.+.+... .....+.+.+|+++++.++||||        +++++++.+++.+|+|||
T Consensus        40 ~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~I--------v~~~~~~~~~~~~~lv~E  111 (340)
T PTZ00426         40 TGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFC--------VNLYGSFKDESYLYLVLE  111 (340)
T ss_pred             ecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCC--------cceEEEEEeCCEEEEEEe
Confidence            5677899999877665 6899999976433 22334567789999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +..+.... ..+   .......++.|++.||.|||+.+                |+||||||+|||++.++.+|
T Consensus       112 y~~~g~L~~~i~~~-~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDLkp~NILl~~~~~ik  171 (340)
T PTZ00426        112 FVIGGEFFTFLRRN-KRF---PNDVGCFYAAQIVLIFEYLQSLN----------------IVYRDLKPENLLLDKDGFIK  171 (340)
T ss_pred             CCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEccCCCHHHEEECCCCCEE
Confidence            99888 43332222 123   34445567789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         169 ISDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      |+|||+++..... .....||+.|++||+.. .. +..+|+|+   ++|+++ .+.+||.+.+.......+..... ..+
T Consensus       172 L~DFG~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell-~G~~Pf~~~~~~~~~~~i~~~~~-~~p  248 (340)
T PTZ00426        172 MTDFGFAKVVDTR-TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEIL-VGCPPFYANEPLLIYQKILEGII-YFP  248 (340)
T ss_pred             EecCCCCeecCCC-cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHh-cCCCCCCCCCHHHHHHHHhcCCC-CCC
Confidence            9999999876543 34567899999999853 22 34556666   555554 56678876553322333322222 122


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .. .+......+...+..+|..|++..
T Consensus       249 ~~-~~~~~~~li~~~l~~dp~~R~~~~  274 (340)
T PTZ00426        249 KF-LDNNCKHLMKKLLSHDLTKRYGNL  274 (340)
T ss_pred             CC-CCHHHHHHHHHHcccCHHHcCCCC
Confidence            22 222445677777788999998643

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.97  E-value=1.2e-29  Score=241.03  Aligned_cols=186  Identities=17%  Similarity=0.189  Sum_probs=142.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||++.+... .......+.+|+++++.++|+||        +++++.+.+++.+|+||||
T Consensus        11 ~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~i--------v~~~~~~~~~~~~~lv~E~   82 (376)
T cd05598          11 IGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWV--------VKLYYSFQDKDNLYFVMDY   82 (376)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCc--------ceEEEEEEcCCEEEEEEeC
Confidence            56778999999999999999999975433 22234567789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+|+ +..+.... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.++.+||
T Consensus        83 ~~~g~L~~~i~~~-~~~---~~~~~~~~~~qi~~al~~lH~~~----------------ivHrDlkp~Nill~~~~~ikL  142 (376)
T cd05598          83 IPGGDMMSLLIRL-GIF---EEDLARFYIAELTCAIESVHKMG----------------FIHRDIKPDNILIDRDGHIKL  142 (376)
T ss_pred             CCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEeCCCCHHHEEECCCCCEEE
Confidence            9988 43332322 122   33444556779999999999999                999999999999999999999


Q ss_pred             EecccccccCCC---------------------------------------------CCCccccCccccccccc-cccC-
Q psy6542         170 SDLGLACDFSKK---------------------------------------------KPHASVESDCILHGYIK-KLGG-  202 (334)
Q Consensus       170 ~DFGla~~~~~~---------------------------------------------~~~~~~~t~~~~~~~v~-~~~~-  202 (334)
                      +|||+|..+...                                             .....+||+.|++||+. ...+ 
T Consensus       143 ~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  222 (376)
T cd05598         143 TDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYT  222 (376)
T ss_pred             EeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCC
Confidence            999998533100                                             01134689999999984 3334 


Q ss_pred             Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         203 PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       203 ~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ..+|+|+   ++|++ ..+..||.+.+
T Consensus       223 ~~~DiwSlGvilyel-l~G~~Pf~~~~  248 (376)
T cd05598         223 QLCDWWSVGVILYEM-LVGQPPFLADT  248 (376)
T ss_pred             cceeeeeccceeeeh-hhCCCCCCCCC
Confidence            4566666   55555 55677887665

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG4236|consensus

Probab=99.97  E-value=9.4e-30  Score=237.71  Aligned_cols=184  Identities=17%  Similarity=0.257  Sum_probs=155.5

Q ss_pred             CceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCC
Q psy6542          14 SKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSG   93 (334)
Q Consensus        14 ~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g   93 (334)
                      -++-||-+.++.||+.||||+|.+.+....-...+.+|+.||+++.||.|        |.+..-|++.+++++|||-+.|
T Consensus       576 QFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGi--------V~le~M~ET~ervFVVMEKl~G  647 (888)
T KOG4236|consen  576 QFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGI--------VNLECMFETPERVFVVMEKLHG  647 (888)
T ss_pred             cceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCe--------eEEEEeecCCceEEEEehhhcc
Confidence            46789999999999999999999888754455688899999999999999        9999999999999999999999


Q ss_pred             C-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC---CCEEE
Q psy6542          94 P-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH---GHVRI  169 (334)
Q Consensus        94 ~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~---~~vkl  169 (334)
                      + ++.+..+...++++...++++.   ||+.||.|||.++                |+|.||||+|||+.+.   -++||
T Consensus       648 DMLEMILSsEkgRL~er~TkFlvt---QIL~ALr~LH~kn----------------IvHCDLKPENVLLas~~~FPQvKl  708 (888)
T KOG4236|consen  648 DMLEMILSSEKGRLPERITKFLVT---QILVALRYLHFKN----------------IVHCDLKPENVLLASASPFPQVKL  708 (888)
T ss_pred             hHHHHHHHhhcccchHHHHHHHHH---HHHHHHHHhhhcc----------------eeeccCCchheeeccCCCCCceee
Confidence            9 8888888888887766666655   9999999999999                9999999999999775   35999


Q ss_pred             EecccccccCCCC-CCccccCccccccccc-cccCCc-ceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK-PHASVESDCILHGYIK-KLGGPF-VSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~-~~~~~~t~~~~~~~v~-~~~~~~-~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ||||+|+.++++. ..+..|||.|++||++ .+||.+ -|+|+   ++|.. ..+.+||.-+
T Consensus       709 CDFGfARiIgEksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVs-LSGTFPFNEd  769 (888)
T KOG4236|consen  709 CDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVS-LSGTFPFNED  769 (888)
T ss_pred             ccccceeecchhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEE-ecccccCCCc
Confidence            9999999998876 4667899999999995 556655 56666   44444 4566676443

>KOG0658|consensus

Probab=99.96  E-value=4.7e-30  Score=231.30  Aligned_cols=184  Identities=19%  Similarity=0.151  Sum_probs=143.1

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--C---eEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--N---SHY   85 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~---~~~   85 (334)
                      .+||++.||.|...++++.||||.+-.+..-      -.+|+++|+.++||||        |++..+|...  +   .+.
T Consensus        33 G~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~------knrEl~im~~l~HpNI--------V~L~~~f~~~~~~d~~~ln   98 (364)
T KOG0658|consen   33 GSGSFGVVYQAKLRETEEEVAIKKVLQDKRY------KNRELQIMRKLDHPNI--------VRLLYFFSSSTESDEVYLN   98 (364)
T ss_pred             eecccceEEEEEEcCCCceeEEEEecCCCCc------CcHHHHHHHhcCCcCe--------eeEEEEEEecCCCchhHHH
Confidence            4689999999999999999999998865441      1249999999999999        9997777632  2   356


Q ss_pred             EEEEccCCChhHHhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          86 IIGVRQSGPKDQISRSK---INRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~---~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      +||||++..+....++-   ....+....+   -+..||.+||.|||+.+                |+||||||+|+|+|
T Consensus        99 lVleymP~tL~~~~r~~~~~~~~mp~~~iK---LYt~Qlfrgl~yLh~~~----------------IcHRDIKPqNlLvD  159 (364)
T KOG0658|consen   99 LVLEYMPETLYRVIRHYTRANQRMPLLEIK---LYTYQLFRGLAYLHSHG----------------ICHRDIKPQNLLVD  159 (364)
T ss_pred             HHHHhchHHHHHHHHHHhhcCCCCceeeeH---HHHHHHHHHHHHHHhcC----------------cccCCCChheEEEc
Confidence            99999999965554532   1233333333   34559999999999999                99999999999999


Q ss_pred             CC-CCEEEEecccccccCCCCCCc-cccCcccccccc---ccccCCcceeeh--hHHHHHcCCCCCCCCCCC
Q psy6542         163 EH-GHVRISDLGLACDFSKKKPHA-SVESDCILHGYI---KKLGGPFVSAWQ--TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       163 ~~-~~vkl~DFGla~~~~~~~~~~-~~~t~~~~~~~v---~~~~~~~~~~w~--~~~~~l~~~~~~~~~~~~  227 (334)
                      .+ |.+||||||.|+.+..+.++. +.-|-+|-|||+   +..++..-|+||  |+.+.|.-+.+-|.|++.
T Consensus       160 ~~tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~  231 (364)
T KOG0658|consen  160 PDTGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSS  231 (364)
T ss_pred             CCCCeEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCH
Confidence            88 889999999999887776554 445889999998   345566677777  777777777777888764

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.96  E-value=2.1e-29  Score=234.47  Aligned_cols=228  Identities=16%  Similarity=0.152  Sum_probs=160.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHH-HHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQE-IFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~-il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|.++.+|+.||||++.+... .....+.+..|.. +++.++||||        +++++.+.+++.+|+|||
T Consensus         5 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~i--------v~~~~~~~~~~~~~lv~e   76 (323)
T cd05575           5 KGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFL--------VGLHYSFQTADKLYFVLD   76 (323)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCC--------CCeeEEEEeCCEEEEEEc
Confidence            47888999999999999999999986433 2222234444544 5688999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +...... ...+   .......++.||+.||.|||+++                |+||||||+|||+++++.+|
T Consensus        77 ~~~~g~L~~~l~~-~~~~---~~~~~~~~~~qi~~~l~~lH~~g----------------ivH~dikp~NIll~~~~~~k  136 (323)
T cd05575          77 YVNGGELFFHLQR-ERSF---PEPRARFYAAEIASALGYLHSLN----------------IIYRDLKPENILLDSQGHVV  136 (323)
T ss_pred             CCCCCCHHHHHHh-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEeCCCCHHHeEECCCCcEE
Confidence            99998 4322222 1223   34445567789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCC--CCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKK--KPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++.....  .....+||+.|++||+.. .. ...+|+|+   ++|++ ..+..||.+.+.....+.+...... 
T Consensus       137 l~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el-l~g~~pf~~~~~~~~~~~i~~~~~~-  214 (323)
T cd05575         137 LTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEM-LYGLPPFYSRDTAEMYDNILNKPLR-  214 (323)
T ss_pred             EeccCCCcccccCCCccccccCChhhcChhhhcCCCCCccccccccchhhhhh-hcCCCCCCCCCHHHHHHHHHcCCCC-
Confidence            9999999754322  233456899999999843 23 34566676   55555 5566788665432222222222211 


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+... +....+.+...+..+|..|++..
T Consensus       215 ~~~~~-~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         215 LKPNI-SVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             CCCCC-CHHHHHHHHHHhhcCHHhCCCCC
Confidence            22222 22345667777788999998864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.96  E-value=2.7e-29  Score=238.32  Aligned_cols=187  Identities=17%  Similarity=0.154  Sum_probs=146.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.++.+++.||||++.+... .......+.+|+.+++.++||||        +++++++.+++.+|+||||
T Consensus        53 ~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~i--------v~~~~~~~~~~~~~lv~Ey  124 (370)
T cd05596          53 RGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWI--------VQLHYAFQDDKYLYMVMEY  124 (370)
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCc--------ceEEEEEecCCEEEEEEcC
Confidence            47788999999999999999999986432 22233457789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|| +..+....  .+   .......++.|++.||.|||+++                |+||||||+|||+++++.+||
T Consensus       125 ~~gg~L~~~l~~~--~l---~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDLkp~NILl~~~~~~kL  183 (370)
T cd05596         125 MPGGDLVNLMSNY--DI---PEKWARFYTAEVVLALDAIHSMG----------------FIHRDVKPDNMLLDKSGHLKL  183 (370)
T ss_pred             CCCCcHHHHHHhc--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCCHHHEEEcCCCCEEE
Confidence            9988 54443321  22   33445566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC---CCccccCccccccccccc------cCCcceeeh---hHHHHHcCCCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK---PHASVESDCILHGYIKKL------GGPFVSAWQ---TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       170 ~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~~------~~~~~~~w~---~~~~~l~~~~~~~~~~~~~  228 (334)
                      +|||++.......   .....||+.|++||+...      ....+|+|+   ++|++ ..+.+||.+.+..
T Consensus       184 ~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyel-ltG~~Pf~~~~~~  253 (370)
T cd05596         184 ADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEM-LVGDTPFYADSLV  253 (370)
T ss_pred             EeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHH-HhCCCCcCCCCHH
Confidence            9999998765432   234578999999998432      234566666   55555 5577788776643

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.96  E-value=3.9e-29  Score=227.88  Aligned_cols=190  Identities=17%  Similarity=0.150  Sum_probs=146.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc-hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE-SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~-~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||++.++.+|+.||||.+...... ....+.+..|+++++.++|+||        +++++++..++.+|+||||
T Consensus         3 ~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i--------~~~~~~~~~~~~~~lv~e~   74 (280)
T cd05608           3 KGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFI--------VSLAYAFQTKTDLCLVMTI   74 (280)
T ss_pred             CCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcE--------eeeeEEEcCCCeEEEEEeC
Confidence            577889999999999999999999865432 2223456789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +.....................++.|++.||.|||+++                |+||||||+||++++++.++|
T Consensus        75 ~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dlkp~Nili~~~~~~~l  138 (280)
T cd05608          75 MNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRR----------------IIYRDLKPENVLLDNDGNVRI  138 (280)
T ss_pred             CCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEECCCCCEEE
Confidence            9988 54332221111122345556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC--CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP--HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++........  ....|++.|++||+..  ..+..+|+|+   ++|+++ .+..||...+
T Consensus       139 ~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~-~g~~pf~~~~  201 (280)
T cd05608         139 SDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMI-AARGPFRARG  201 (280)
T ss_pred             eeCccceecCCCCccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHH-hCCCCCCCCC
Confidence            99999987654432  3346789999999853  2244677777   555655 4666776544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.96  E-value=3.3e-29  Score=237.76  Aligned_cols=187  Identities=17%  Similarity=0.158  Sum_probs=146.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.++.+++.||+|++.+... .....+.+.+|..+++.++||||        +++++++.+++.+|+||||
T Consensus        53 ~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~i--------v~~~~~~~~~~~~~lv~Ey  124 (371)
T cd05622          53 RGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWV--------VQLFYAFQDDRYLYMVMEY  124 (371)
T ss_pred             ecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEEcCCEEEEEEcC
Confidence            57788999999999999999999975432 22234467789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+....  .+   .......++.||+.||.|||+++                |+||||||+|||+++++.+||
T Consensus       125 ~~gg~L~~~~~~~--~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDLkp~NIll~~~~~ikL  183 (371)
T cd05622         125 MPGGDLVNLMSNY--DV---PEKWARFYTAEVVLALDAIHSMG----------------FIHRDVKPDNMLLDKSGHLKL  183 (371)
T ss_pred             CCCCcHHHHHHhc--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------EEeCCCCHHHEEECCCCCEEE
Confidence            9988 54443321  23   33444556779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC---CCccccCccccccccccc------cCCcceeeh---hHHHHHcCCCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK---PHASVESDCILHGYIKKL------GGPFVSAWQ---TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       170 ~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~~------~~~~~~~w~---~~~~~l~~~~~~~~~~~~~  228 (334)
                      +|||+++......   .....||+.|++||+...      ....+|+|+   ++|+++ .+.+||.+.+..
T Consensus       184 ~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell-~G~~Pf~~~~~~  253 (371)
T cd05622         184 ADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML-VGDTPFYADSLV  253 (371)
T ss_pred             EeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHH-hCCCCCCCCCHH
Confidence            9999998765432   235678999999998532      234566666   556655 567788776543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.96  E-value=2.2e-29  Score=234.51  Aligned_cols=228  Identities=16%  Similarity=0.110  Sum_probs=160.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHH-HHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQE-IFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~-il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|.++.+|+.||||++.+... .....+.+..|.. +++.++||||        +++++++..++.+|+|||
T Consensus         5 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~i--------v~~~~~~~~~~~~~lv~e   76 (325)
T cd05604           5 KGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFL--------VGLHYSFQTTEKLYFVLD   76 (325)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCC--------ccEEEEEecCCEEEEEEc
Confidence            57788999999999999999999986533 2222334444544 5788999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +...... ...+   ....+..++.||+.||.|||+.+                |+||||||+|||+++++.+|
T Consensus        77 ~~~~~~L~~~l~~-~~~~---~~~~~~~~~~qi~~al~~lH~~g----------------ivH~Dlkp~NIll~~~~~~k  136 (325)
T cd05604          77 FVNGGELFFHLQR-ERSF---PEPRARFYAAEIASALGYLHSIN----------------IVYRDLKPENILLDSQGHVV  136 (325)
T ss_pred             CCCCCCHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeecCCCHHHeEECCCCCEE
Confidence            99998 4222221 1223   44455567779999999999999                99999999999999999999


Q ss_pred             EEecccccccCC--CCCCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSK--KKPHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~--~~~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++....  .......|++.|++||+... . ...+|+|+   ++|+++ .+..||.+.+.......+...... 
T Consensus       137 L~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~-~G~~pf~~~~~~~~~~~~~~~~~~-  214 (325)
T cd05604         137 LTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEML-YGLPPFYCRDVAEMYDNILHKPLV-  214 (325)
T ss_pred             EeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhh-cCCCCCCCCCHHHHHHHHHcCCcc-
Confidence            999999975432  22344568999999998532 2 34566666   556654 566788766533222322222211 


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...... ......+...+..+|..|++..
T Consensus       215 ~~~~~~-~~~~~ll~~ll~~~p~~R~~~~  242 (325)
T cd05604         215 LRPGAS-LTAWSILEELLEKDRQRRLGAK  242 (325)
T ss_pred             CCCCCC-HHHHHHHHHHhccCHHhcCCCC
Confidence            111211 1334566666678888888764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=3.6e-29  Score=245.09  Aligned_cols=232  Identities=12%  Similarity=0.082  Sum_probs=163.8

Q ss_pred             CCCCceEEEeceeCCC-CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPL-GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~-~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .+++.+.||+|.+..+ ++.||+|.+.....  .....+.+|+.+++.++||||        |++++++.+++.+|||||
T Consensus        76 g~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~--~~~~~~~~E~~~l~~l~Hpni--------v~~~~~~~~~~~~~lv~E  145 (478)
T PTZ00267         76 GRNPTTAAFVATRGSDPKEKVVAKFVMLNDE--RQAAYARSELHCLAACDHFGI--------VKHFDDFKSDDKLLLIME  145 (478)
T ss_pred             EeCCCcEEEEEEEcCCCCeEEEEEEcccCCH--HHHHHHHHHHHHHHhCCCCCE--------eEEEEEEEECCEEEEEEE
Confidence            3688889999999888 88899998754432  233467789999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +.....................++.|++.||.|||+++                |+||||||+|||++.++.+|
T Consensus       146 ~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~----------------ivHrDlkp~NIll~~~~~~k  209 (478)
T PTZ00267        146 YGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRK----------------MMHRDLKSANIFLMPTGIIK  209 (478)
T ss_pred             CCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC----------------EEECCcCHHhEEECCCCcEE
Confidence            99988 54332222211122244555667789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC----CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccc
Q psy6542         169 ISDLGLACDFSKKK----PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQI  239 (334)
Q Consensus       169 l~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  239 (334)
                      |+|||+++.+....    ....+||+.|++||+.. ..++ .+|+|+   ++|+++ ++..||.+.+.......+.....
T Consensus       210 L~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~-tg~~Pf~~~~~~~~~~~~~~~~~  288 (478)
T PTZ00267        210 LGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELL-TLHRPFKGPSQREIMQQVLYGKY  288 (478)
T ss_pred             EEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHhCCC
Confidence            99999998765432    23456899999999853 3344 456666   555554 56778766543222222222222


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...+.... ......+..++..+|..|++..
T Consensus       289 ~~~~~~~s-~~~~~li~~~L~~dP~~Rps~~  318 (478)
T PTZ00267        289 DPFPCPVS-SGMKALLDPLLSKNPALRPTTQ  318 (478)
T ss_pred             CCCCccCC-HHHHHHHHHHhccChhhCcCHH
Confidence            22222222 1334566666677888887754

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.96  E-value=3.3e-29  Score=232.85  Aligned_cols=228  Identities=17%  Similarity=0.124  Sum_probs=160.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHH-HHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQ-EIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~-~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++...||+|.+..+|+.||||++.+... .....+.+..|. .+++.++||||        +++++++.+++.+|+|||
T Consensus         5 ~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~i--------v~~~~~~~~~~~~~lv~e   76 (321)
T cd05603           5 KGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFL--------VGLHYSFQTAEKLYFVLD   76 (321)
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCc--------cceeeEEEcCCEEEEEEc
Confidence            47788999999999999999999986543 222233444454 46889999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +...... ...+   .......++.||+.||.|||+.+                |+||||||+||+++.++.+|
T Consensus        77 ~~~~~~L~~~l~~-~~~~---~~~~~~~~~~qi~~~L~~lH~~~----------------ivH~Dlkp~NIll~~~~~~k  136 (321)
T cd05603          77 YVNGGELFFHLQR-ERCF---LEPRARFYAAEVASAIGYLHSLN----------------IIYRDLKPENILLDSQGHVV  136 (321)
T ss_pred             CCCCCCHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEeccCCHHHeEECCCCCEE
Confidence            99998 4222222 1223   33444556779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCC--CCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKK--KPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++.....  .....+|++.|++||+.. .. ...+|+|+   ++|++ ..+..||.+.+.....+.+.... ..
T Consensus       137 l~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el-~~g~~pf~~~~~~~~~~~i~~~~-~~  214 (321)
T cd05603         137 LTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEM-LYGLPPFYSRDVSQMYDNILHKP-LQ  214 (321)
T ss_pred             EccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhh-hcCCCCCCCCCHHHHHHHHhcCC-CC
Confidence            9999999854222  234456899999999843 22 34566677   55555 55677887765332223222221 12


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.... ....+.+...+..+|..|++..
T Consensus       215 ~~~~~~-~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         215 LPGGKT-VAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CCCCCC-HHHHHHHHHHccCCHhhcCCCC
Confidence            222222 2345677777788999998754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.96  E-value=2.4e-29  Score=233.45  Aligned_cols=228  Identities=18%  Similarity=0.177  Sum_probs=161.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHh-cCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNH-LRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~-l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .++...||+|.+..+++.||||+++.... .....+.+..|..++.. .+||||        +++++++..++.+|+|||
T Consensus         5 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i--------~~~~~~~~~~~~~~lv~e   76 (316)
T cd05592           5 KGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFL--------THLFCTFQTKEHLFFVME   76 (316)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCc--------cceeeEEEcCCEEEEEEc
Confidence            47788999999999999999999986532 22223344556667665 589999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +....... ..+   .......++.|++.||.|||+++                |+||||||+|||++.++.+|
T Consensus        77 ~~~gg~L~~~~~~~-~~~---~~~~~~~~~~qi~~al~~LH~~~----------------ivH~dlkp~Nill~~~~~~k  136 (316)
T cd05592          77 YLNGGDLMFHIQSS-GRF---DEARARFYAAEIICGLQFLHKKG----------------IIYRDLKLDNVLLDKDGHIK  136 (316)
T ss_pred             CCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EEeCCCCHHHeEECCCCCEE
Confidence            99988 43332221 223   44445567789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCC--CCCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKK--KPHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++.....  .....+||+.|++||+..  ..+..+|+|+   ++|+++ .+..||.+.+.......+.... ..
T Consensus       137 L~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell-~G~~Pf~~~~~~~~~~~i~~~~-~~  214 (316)
T cd05592         137 IADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEML-IGQSPFHGEDEDELFDSILNDR-PH  214 (316)
T ss_pred             EccCcCCeECCCCCCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHH-hCCCCCCCCCHHHHHHHHHcCC-CC
Confidence            9999999864332  234457899999999843  2345667777   556665 4677887665332222222211 11


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.. .+.....++...+..+|..|++..
T Consensus       215 ~~~~-~~~~~~~ll~~~l~~~P~~R~~~~  242 (316)
T cd05592         215 FPRW-ISKEAKDCLSKLFERDPTKRLGVD  242 (316)
T ss_pred             CCCC-CCHHHHHHHHHHccCCHHHcCCCh
Confidence            2212 222345667777788899988754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG1026|consensus

Probab=99.96  E-value=3.6e-30  Score=253.18  Aligned_cols=243  Identities=15%  Similarity=0.064  Sum_probs=188.2

Q ss_pred             CCCceEEEeceeCC-----CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLKP-----LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-----~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      .+-+++||+|+...     +.+.||||.++.... ....+.|++|++++..|+||||        |++++++..++.+||
T Consensus       496 egaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~-~~~~~dF~REaeLla~l~H~nI--------VrLlGVC~~~~P~~M  566 (774)
T KOG1026|consen  496 EGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAE-NQARQDFRREAELLAELQHPNI--------VRLLGVCREGDPLCM  566 (774)
T ss_pred             CchhhhhhhhhccCCCCCccceehhHhhhccccc-HHHHHHHHHHHHHHHhccCCCe--------EEEEEEEccCCeeEE
Confidence            34567899998754     446799999996654 3367789999999999999999        999999999999999


Q ss_pred             EEEccCCC-h-hHHhhhhhhh---------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCC
Q psy6542          87 IGVRQSGP-K-DQISRSKINR---------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK  155 (334)
Q Consensus        87 vmEy~~g~-l-~~l~~~~~~~---------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlK  155 (334)
                      |+|||..| + +++..+....         .+++....++.|+.||+.|+.||-++.                ++||||-
T Consensus       567 vFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~----------------FVHRDLA  630 (774)
T KOG1026|consen  567 VFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHH----------------FVHRDLA  630 (774)
T ss_pred             EEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCc----------------ccccchh
Confidence            99999888 4 3343321110         122566778899999999999999999                9999999


Q ss_pred             CCceeeCCCCCEEEEecccccccCCCCCCccc----cCcccccccc--ccccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         156 PANILLDEHGHVRISDLGLACDFSKKKPHASV----ESDCILHGYI--KKLGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       156 p~NiLl~~~~~vkl~DFGla~~~~~~~~~~~~----~t~~~~~~~v--~~~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ..|+|++++-.|||+||||++..-........    =...+||||.  ....++.+|+|+   ++||.+..+..|+++.+
T Consensus       631 TRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glS  710 (774)
T KOG1026|consen  631 TRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLS  710 (774)
T ss_pred             hhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccc
Confidence            99999999999999999999976555433222    2578899996  466688999999   99999999999999888


Q ss_pred             CCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch--hHHHH
Q psy6542         227 GQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC--SQELL  304 (334)
Q Consensus       227 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~--~~~lL  304 (334)
                      ++..-+.+...++                           +.|+    ...|.++.++|+.||...+..+.+.  ....|
T Consensus       711 n~EVIe~i~~g~l---------------------------L~~P----e~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L  759 (774)
T KOG1026|consen  711 NQEVIECIRAGQL---------------------------LSCP----ENCPTEVYSLMLECWNENPKRRPSFKEIHSRL  759 (774)
T ss_pred             hHHHHHHHHcCCc---------------------------ccCC----CCCCHHHHHHHHHHhhcCcccCCCHHHHHHHH
Confidence            6544444333333                           3333    5677888999999999876555544  66667


Q ss_pred             HHHHHH
Q psy6542         305 GSMARK  310 (334)
Q Consensus       305 ~~l~~~  310 (334)
                      +++...
T Consensus       760 ~~~~~~  765 (774)
T KOG1026|consen  760 QAWAQA  765 (774)
T ss_pred             HHHHhc
Confidence            766554

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.96  E-value=6e-29  Score=232.13  Aligned_cols=228  Identities=16%  Similarity=0.166  Sum_probs=163.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++...||+|.++.+++.||||++++... +......+..|..++..+ +||||        +++++++.+++.+|+|||
T Consensus         5 ~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~I--------v~~~~~~~~~~~~~lv~e   76 (329)
T cd05588           5 RGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFL--------VGLHSCFQTESRLFFVIE   76 (329)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCC--------CceEEEEEcCCEEEEEEe
Confidence            57788999999999999999999986543 223345677899999988 79999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +...... ...+   ....+..++.|++.||.|||+++                ++||||||+|||+++++.+|
T Consensus        77 ~~~~g~L~~~~~~-~~~l---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~dlkp~Nili~~~~~~k  136 (329)
T cd05588          77 FVSGGDLMFHMQR-QRKL---PEEHARFYSAEISLALNFLHERG----------------IIYRDLKLDNVLLDAEGHIK  136 (329)
T ss_pred             CCCCCCHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEecCCCHHHeEECCCCCEE
Confidence            99998 4322221 1233   44555667789999999999999                99999999999999999999


Q ss_pred             EEecccccccCC--CCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCC---------ccc
Q psy6542         169 ISDLGLACDFSK--KKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQS---------KPE  232 (334)
Q Consensus       169 l~DFGla~~~~~--~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~---------~~~  232 (334)
                      |+|||+++....  ......+||+.|++||+.. .. +..+|+|+   ++|++ .++..||...+...         ..+
T Consensus       137 L~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el-~~g~~Pf~~~~~~~~~~~~~~~~~~~  215 (329)
T cd05588         137 LTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEM-MAGRSPFDIVGMSDNPDQNTEDYLFQ  215 (329)
T ss_pred             ECcCccccccccCCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHH-HHCCCCcccccccccccccchHHHHH
Confidence            999999975322  2234467899999999853 23 34566676   55555 45677875432211         111


Q ss_pred             chhcccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         233 LIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.... ...+.... ......+...+..+|..|+++.
T Consensus       216 ~~~~~~-~~~p~~~~-~~~~~li~~~L~~dP~~R~~~~  251 (329)
T cd05588         216 VILEKQ-IRIPRSLS-VKASSVLKGFLNKDPKERLGCH  251 (329)
T ss_pred             HHHcCC-CCCCCCCC-HHHHHHHHHHhccCHHHcCCCC
Confidence            111111 12222222 2345667777788999999864

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.7e-29  Score=235.63  Aligned_cols=229  Identities=17%  Similarity=0.136  Sum_probs=162.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc---CCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL---RNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l---~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++...||+|.++.+|+.||||++.+... ..........|..++..+   +||||        +++++++.+++.+|+|
T Consensus         3 ~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i--------~~~~~~~~~~~~~~lv   74 (330)
T cd05586           3 KGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFI--------VGLKFSFQTDSDLYLV   74 (330)
T ss_pred             CCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcC--------cceEEEEecCCeEEEE
Confidence            47788999999999999999999975432 112223445567777665   69999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.|+ +...... ...+   ....+..++.||+.||.|||+++                |+||||||+|||++.++.
T Consensus        75 ~e~~~~g~L~~~l~~-~~~~---~~~~~~~~~~qil~al~~LH~~~----------------ivHrDlkp~Nili~~~~~  134 (330)
T cd05586          75 TDYMSGGELFWHLQK-EGRF---SEDRAKFYIAELVLALEHLHKYD----------------IVYRDLKPENILLDATGH  134 (330)
T ss_pred             EcCCCCChHHHHHHh-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEeccCCHHHeEECCCCC
Confidence            9999988 4322222 1233   44555667779999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCC--CCCccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         167 VRISDLGLACDFSKK--KPHASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       167 vkl~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      +||+|||+++.....  .....+||..|++||+..  . ....+|+|+   ++|++ .++..||.+.........+....
T Consensus       135 ~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~el-ltG~~Pf~~~~~~~~~~~i~~~~  213 (330)
T cd05586         135 IALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEM-CCGWSPFYAEDTQQMYRNIAFGK  213 (330)
T ss_pred             EEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEe-ccCCCCCCCCCHHHHHHHHHcCC
Confidence            999999999754332  234567899999999753  2 245677777   55555 45667887665333222222222


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      . ..+....+......+...+..+|..|+...
T Consensus       214 ~-~~~~~~~~~~~~~li~~~L~~~P~~R~~~~  244 (330)
T cd05586         214 V-RFPKNVLSDEGRQFVKGLLNRNPQHRLGAH  244 (330)
T ss_pred             C-CCCCccCCHHHHHHHHHHcCCCHHHCCCCC
Confidence            2 122222222445677777788999998654

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.96  E-value=1.8e-29  Score=230.64  Aligned_cols=189  Identities=17%  Similarity=0.152  Sum_probs=139.9

Q ss_pred             CCCceEEEeceeCC-CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc---CCCCcccccccceeeEEEEee-----cCC
Q psy6542          12 RVSKWRVKPPSLKP-LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL---RNEPFKKCVLLFKMNLYKVTS-----EPN   82 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l---~h~~i~~~~~~~~v~~~~~~~-----~~~   82 (334)
                      +++...||+|.+.. +|+.||||.++...........+.+|+.+++.+   +||||        +++++++.     .+.
T Consensus        11 ~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpni--------v~~~~~~~~~~~~~~~   82 (290)
T cd07862          11 EGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNV--------VRLFDVCTVSRTDRET   82 (290)
T ss_pred             cCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCc--------ceEEEEEecccCCCCC
Confidence            57788999999864 578899999986654333334455677777765   69999        99999885     345


Q ss_pred             eEEEEEEccCCChhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          83 SHYIIGVRQSGPKDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        83 ~~~ivmEy~~g~l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      .+++||||+++++..+... ....+   ....+..++.|++.||.|||+++                |+||||||+|||+
T Consensus        83 ~~~lv~e~~~~~l~~~~~~~~~~~~---~~~~~~~i~~qi~~aL~~lH~~~----------------iiH~dlkp~Nil~  143 (290)
T cd07862          83 KLTLVFEHVDQDLTTYLDKVPEPGV---PTETIKDMMFQLLRGLDFLHSHR----------------VVHRDLKPQNILV  143 (290)
T ss_pred             cEEEEEccCCCCHHHHHHhCCCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeeCCCCHHHEEE
Confidence            6999999999884333222 21122   44556677889999999999999                9999999999999


Q ss_pred             CCCCCEEEEecccccccCCCC-CCccccCcccccccccc--ccCCcceeeh--hHHHHHcCCCCCCCCCCC
Q psy6542         162 DEHGHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK--LGGPFVSAWQ--TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       162 ~~~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~--~~~~~~~~w~--~~~~~l~~~~~~~~~~~~  227 (334)
                      +.++.+||+|||+++...... .....|++.|++||+..  .....+|+|+  ++.+.++++.+||.+.+.
T Consensus       144 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~  214 (290)
T cd07862         144 TSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD  214 (290)
T ss_pred             cCCCCEEEccccceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCH
Confidence            999999999999998665443 23456789999999842  2344667777  444444567778876653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.4e-29  Score=233.95  Aligned_cols=185  Identities=16%  Similarity=0.169  Sum_probs=145.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++...||+|.+..+|+.||||++++... .....+.+.+|+++++.++||||        +++++++.+++.+|+||||
T Consensus        11 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i--------v~~~~~~~~~~~~~lv~e~   82 (333)
T cd05600          11 QGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWL--------VKLLYAFQDDEYLYLAMEY   82 (333)
T ss_pred             ecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCC--------ccEEEEEEcCCEEEEEEeC
Confidence            56778999999999999999999986543 22234567789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ..+   .......++.|++.||.|||+++                |+||||||+|||+++++.+||
T Consensus        83 ~~g~~L~~~l~~~-~~l---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~dlkp~Nil~~~~~~~kL  142 (333)
T cd05600          83 VPGGDFRTLLNNL-GVL---SEDHARFYMAEMFEAVDALHELG----------------YIHRDLKPENFLIDASGHIKL  142 (333)
T ss_pred             CCCCCHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCCHHHEEECCCCCEEE
Confidence            9988 54433321 122   34445567779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||+++.... ......|++.|++||+.. .. ...+|+|+   ++|++ ..+.+||.+.+
T Consensus       143 ~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el-l~g~~pf~~~~  202 (333)
T cd05600         143 TDFGLSKGIVT-YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEF-LCGFPPFSGST  202 (333)
T ss_pred             EeCcCCccccc-ccCCcccCccccChhHhcCCCCCCccceecchHHHhhh-hhCCCCCCCCC
Confidence            99999986654 344567899999999843 23 44566676   55555 45667876654

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.96  E-value=1.6e-28  Score=229.22  Aligned_cols=228  Identities=16%  Similarity=0.197  Sum_probs=162.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|.++.+++.||+|++++... +....+.+.+|..++..+ +||||        +++++++.+++.+|+|||
T Consensus         5 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~i--------v~~~~~~~~~~~~~lv~E   76 (329)
T cd05618           5 RGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFL--------VGLHSCFQTESRLFFVIE   76 (329)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcC--------CceeeEEEeCCEEEEEEe
Confidence            57788999999999999999999987543 333445677888888776 89999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +...... ...+   .......++.|++.||.|||+++                |+||||||+||+++.++.+|
T Consensus        77 ~~~~~~L~~~~~~-~~~l---~~~~~~~i~~qi~~~l~~lH~~~----------------ivH~Dikp~Nili~~~~~~k  136 (329)
T cd05618          77 YVNGGDLMFHMQR-QRKL---PEEHARFYSAEISLALNYLHERG----------------IIYRDLKLDNVLLDSEGHIK  136 (329)
T ss_pred             CCCCCCHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeeCCCCHHHEEECCCCCEE
Confidence            99988 4322222 1233   44555667779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCC--CCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcc---------c
Q psy6542         169 ISDLGLACDFSKK--KPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKP---------E  232 (334)
Q Consensus       169 l~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~---------~  232 (334)
                      |+|||+++.....  ......||..|++||+.. .. +..+|+|+   ++|+++ ++..||.........         +
T Consensus       137 L~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~-~g~~Pf~~~~~~~~~~~~~~~~~~~  215 (329)
T cd05618         137 LTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMM-AGRSPFDIVGSSDNPDQNTEDYLFQ  215 (329)
T ss_pred             EeeCCccccccCCCCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHh-hCCCCCccCCCcCCcccccHHHHHH
Confidence            9999999854322  233457899999999853 22 44677777   555555 466677532211111         1


Q ss_pred             chhcccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         233 LIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.... ..++.... ......+...+..||..|+++.
T Consensus       216 ~i~~~~-~~~p~~~~-~~~~~ll~~~L~~dP~~R~~~~  251 (329)
T cd05618         216 VILEKQ-IRIPRSLS-VKAASVLKSFLNKDPKERLGCH  251 (329)
T ss_pred             HHhcCC-CCCCCCCC-HHHHHHHHHHhcCCHHHcCCCC
Confidence            111111 12232222 1334566667788999998864

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.96  E-value=6.2e-29  Score=231.48  Aligned_cols=229  Identities=14%  Similarity=0.128  Sum_probs=159.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHH-HHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYI-QEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E-~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++...||+|.++.+++.||+|++.+... .......+..| ..+++.++||||        +++++++.+++.+|+|||
T Consensus         5 ~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~I--------v~~~~~~~~~~~~~lv~e   76 (325)
T cd05602           5 KGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFL--------VGLHFSFQTADKLYFVLD   76 (325)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCC--------CceeEEEEcCCeEEEEEe
Confidence            57788999999999999999999986433 11122233334 445788999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +....... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.++.+|
T Consensus        77 ~~~~~~L~~~~~~~-~~~---~~~~~~~~~~qi~~~L~~lH~~g----------------iiHrDlkp~Nili~~~~~~k  136 (325)
T cd05602          77 YINGGELFYHLQRE-RCF---LEPRARFYAAEIASALGYLHSLN----------------IVYRDLKPENILLDSQGHIV  136 (325)
T ss_pred             CCCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEecCCCHHHeEECCCCCEE
Confidence            99998 43332221 223   23344456779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCC--CCCccccCcccccccccc-ccC-Ccceeeh--hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         169 ISDLGLACDFSKK--KPHASVESDCILHGYIKK-LGG-PFVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       169 l~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~-~~~-~~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |+|||+++.....  .....+||+.|++||+.. ..+ ..+|+|+  ++.+.|..+.+||.+.+.......+..... ..
T Consensus       137 l~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~-~~  215 (325)
T cd05602         137 LTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPL-QL  215 (325)
T ss_pred             EccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCCc-CC
Confidence            9999999854322  234457899999999843 233 4566666  444444566778876553322222222211 11


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ..... ......+...+..+|..|++..
T Consensus       216 ~~~~~-~~~~~li~~~l~~~p~~R~~~~  242 (325)
T cd05602         216 KPNIT-NSARHLLEGLLQKDRTKRLGAK  242 (325)
T ss_pred             CCCCC-HHHHHHHHHHcccCHHHCCCCC
Confidence            21222 2345667777788999998865

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.96  E-value=3.8e-29  Score=230.44  Aligned_cols=185  Identities=15%  Similarity=0.106  Sum_probs=142.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.++.+|+.||||+++...... ....+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        15 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~lv~e~~   85 (303)
T cd07869          15 EGSYATVYKGKSKVNGKLVALKVIRLQEEEG-TPFTAIREASLLKGLKHANI--------VLLHDIIHTKETLTLVFEYV   85 (303)
T ss_pred             ecCCEEEEEEEECCCCCEEEEEEeccccccc-cchhHHHHHHHHhhCCCCCc--------CeEEEEEecCCeEEEEEECC
Confidence            4677899999999999999999998654322 22346679999999999999        99999999999999999999


Q ss_pred             CCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      ++++ +.+... ...+   ....+..++.|++.||.|||+++                |+||||||+|||+++++.+||+
T Consensus        86 ~~~l~~~~~~~-~~~~---~~~~~~~~~~qi~~al~~lH~~~----------------ivH~dlkp~Nill~~~~~~kl~  145 (303)
T cd07869          86 HTDLCQYMDKH-PGGL---HPENVKLFLFQLLRGLSYIHQRY----------------ILHRDLKPQNLLISDTGELKLA  145 (303)
T ss_pred             CcCHHHHHHhC-CCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEECCCCCEEEC
Confidence            9884 344322 2223   34445667789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+++......  .....++..|++||+..  .. ...+|+|+   ++|++ .++..||.+..
T Consensus       146 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l-~~g~~pf~~~~  208 (303)
T cd07869         146 DFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEM-IQGVAAFPGMK  208 (303)
T ss_pred             CCCcceeccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHH-HhCCCCCCCCc
Confidence            999997543322  23356788999999742  23 34566677   45555 55666876543

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0612|consensus

Probab=99.96  E-value=1.3e-30  Score=261.15  Aligned_cols=228  Identities=16%  Similarity=0.146  Sum_probs=177.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      ||.++.|.+++++.|++.||+|++++-.. .......|..|-.||..-+.+-|        |+++-+|++++++|+||||
T Consensus        85 rGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wi--------v~LhyAFQD~~~LYlVMdY  156 (1317)
T KOG0612|consen   85 RGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWI--------VQLHYAFQDERYLYLVMDY  156 (1317)
T ss_pred             ccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHH--------HHHHHHhcCccceEEEEec
Confidence            78899999999999999999999997443 23334578899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|| +--+ .++...+++..+.++   +.+|+.||+-||+.|                +|||||||+|||+|..|++||
T Consensus       157 ~pGGDlltL-lSk~~~~pE~~ArFY---~aEiVlAldslH~mg----------------yVHRDiKPDNvLld~~GHikL  216 (1317)
T KOG0612|consen  157 MPGGDLLTL-LSKFDRLPEDWARFY---TAEIVLALDSLHSMG----------------YVHRDIKPDNVLLDKSGHIKL  216 (1317)
T ss_pred             ccCchHHHH-HhhcCCChHHHHHHH---HHHHHHHHHHHHhcc----------------ceeccCCcceeEecccCcEee
Confidence            9999 3222 222224544444444   459999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC---CCccccCcccccccccc------ccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         170 SDLGLACDFSKKK---PHASVESDCILHGYIKK------LGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       170 ~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~------~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                      +|||.|-.+..+.   +.+.+|||-|.+||++.      ..|....|||    ++|||++| .+|||+++....+..|+.
T Consensus       217 ADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG-~TPFYadslveTY~KIm~  295 (1317)
T KOG0612|consen  217 ADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYG-ETPFYADSLVETYGKIMN  295 (1317)
T ss_pred             ccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcC-CCcchHHHHHHHHHHHhc
Confidence            9999998887554   45568999999999842      3378899999    77888665 569999999988887766


Q ss_pred             c-cccccccccccHhHHHHHHHhhccCchhhcC
Q psy6542         237 D-QIEEVSQDLITVKGEQCVQLKLTRDTRIVLT  268 (334)
Q Consensus       237 ~-~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~  268 (334)
                      . ....+|.+..-......++..+..+|..|++
T Consensus       296 hk~~l~FP~~~~VSeeakdLI~~ll~~~e~RLg  328 (1317)
T KOG0612|consen  296 HKESLSFPDETDVSEEAKDLIEALLCDREVRLG  328 (1317)
T ss_pred             hhhhcCCCcccccCHHHHHHHHHHhcChhhhcc
Confidence            6 3445562222113344455555566666776

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.96  E-value=5.3e-29  Score=237.07  Aligned_cols=186  Identities=16%  Similarity=0.179  Sum_probs=143.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.++.+++.||||++..... .......+.+|+++++.++|+||        +++++++.+++.+|+||||
T Consensus        11 ~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~i--------v~l~~~~~~~~~~~lv~E~   82 (381)
T cd05626          11 IGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWV--------VKLYYSFQDKDNLYFVMDY   82 (381)
T ss_pred             ecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCe--------eeeEEEEecCCEEEEEEec
Confidence            57888999999999999999999986543 33345578889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ..+   .+.....++.||+.||.|||+.+                |+||||||+|||++.++.+||
T Consensus        83 ~~gg~L~~~l~~~-~~~---~e~~~~~~~~qi~~aL~~LH~~g----------------ivHrDlKp~Nili~~~~~~kL  142 (381)
T cd05626          83 IPGGDMMSLLIRM-EVF---PEVLARFYIAELTLAIESVHKMG----------------FIHRDIKPDNILIDLDGHIKL  142 (381)
T ss_pred             CCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeecCCcHHHEEECCCCCEEE
Confidence            9988 43332221 233   33344455669999999999999                999999999999999999999


Q ss_pred             EecccccccCCC-------------------------------------------------CCCccccCccccccccc-c
Q psy6542         170 SDLGLACDFSKK-------------------------------------------------KPHASVESDCILHGYIK-K  199 (334)
Q Consensus       170 ~DFGla~~~~~~-------------------------------------------------~~~~~~~t~~~~~~~v~-~  199 (334)
                      +|||+++.+...                                                 ...+..||+.|++||+. .
T Consensus       143 ~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~  222 (381)
T cd05626         143 TDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLR  222 (381)
T ss_pred             eeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcC
Confidence            999998643110                                                 01234689999999984 3


Q ss_pred             ccC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         200 LGG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       200 ~~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ..+ ..+|+|+   ++|++ .++.+||.+..
T Consensus       223 ~~~~~~~DiwSlG~il~el-ltG~~Pf~~~~  252 (381)
T cd05626         223 KGYTQLCDWWSVGVILFEM-LVGQPPFLAPT  252 (381)
T ss_pred             CCCCCccceeehhhHHHHH-HhCCCCCcCCC
Confidence            334 4566666   45555 55667886654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.96  E-value=5.1e-29  Score=231.98  Aligned_cols=228  Identities=15%  Similarity=0.126  Sum_probs=161.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCC-cccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEP-FKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~-i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .++.+.||+|.++.+++.||||++++... .....+.+..|.+++..++|++ |        +++++++.+++.+|+|||
T Consensus        10 ~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i--------~~~~~~~~~~~~~~lv~E   81 (324)
T cd05587          10 KGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFL--------TQLHSCFQTMDRLYFVME   81 (324)
T ss_pred             eccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCce--------eeeEEEEEcCCEEEEEEc
Confidence            57788999999999999999999986533 2223446677999999998765 6        889999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +....... ..+   .......++.||+.||.|||+++                |+||||||+|||++.++.+|
T Consensus        82 ~~~~g~L~~~~~~~-~~~---~~~~~~~~~~qi~~al~~lH~~~----------------ivH~dlkp~Nill~~~~~~k  141 (324)
T cd05587          82 YVNGGDLMYHIQQV-GKF---KEPHAVFYAAEIAIGLFFLHSKG----------------IIYRDLKLDNVMLDAEGHIK  141 (324)
T ss_pred             CCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEecCCCHHHeEEcCCCCEE
Confidence            99988 43332221 123   33445667789999999999999                99999999999999999999


Q ss_pred             EEecccccccC--CCCCCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFS--KKKPHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~--~~~~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++...  .......+||+.|++||+.. ..+ ..+|+|+   ++|+++ ++..||.+.+.......+..... .
T Consensus       142 L~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell-tG~~pf~~~~~~~~~~~i~~~~~-~  219 (324)
T cd05587         142 IADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEML-AGQPPFDGEDEDELFQSIMEHNV-S  219 (324)
T ss_pred             EeecCcceecCCCCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHH-hCCCCCCCCCHHHHHHHHHcCCC-C
Confidence            99999997542  22234457899999999853 233 4556666   556655 57778876653322222222211 1


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.... ....+.+...+..+|..|++..
T Consensus       220 ~~~~~~-~~~~~li~~~l~~~P~~R~~~~  247 (324)
T cd05587         220 YPKSLS-KEAVSICKGLLTKHPAKRLGCG  247 (324)
T ss_pred             CCCCCC-HHHHHHHHHHhhcCHHHcCCCC
Confidence            222222 1334556666678999998763

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.96  E-value=1.7e-28  Score=223.42  Aligned_cols=187  Identities=19%  Similarity=0.166  Sum_probs=143.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc-hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE-SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~-~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||++.++.+|+.||+|.+...... ....+.+..|++++++++||||        +++++++.+++.+|+||||
T Consensus         3 ~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i--------~~~~~~~~~~~~~~lv~e~   74 (277)
T cd05607           3 KGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFI--------VNLAYAFESKTHLCLVMSL   74 (277)
T ss_pred             CCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcE--------EEEEEEEecCCeEEEEEec
Confidence            567889999999999999999999754431 1223345569999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +........  .........+.++.|++.||.|||+.+                |+||||||+||++++++.++|
T Consensus        75 ~~g~~L~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~~----------------ivH~dikp~Nili~~~~~~~l  136 (277)
T cd05607          75 MNGGDLKYHIYNVG--ERGLEMERVIHYSAQITCGILHLHSMD----------------IVYRDMKPENVLLDDQGNCRL  136 (277)
T ss_pred             CCCCCHHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHHCC----------------EEEccCChHhEEEcCCCCEEE
Confidence            9988 433322211  111245555677789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC-CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP-HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||++........ ....|+..|++||+..  ..+..+|+|+   ++|++++ +..||...
T Consensus       137 ~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~-g~~p~~~~  197 (277)
T cd05607         137 SDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVA-GRTPFKDH  197 (277)
T ss_pred             eeceeeeecCCCceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHh-CCCCCCCC
Confidence            99999987655432 2346788999999842  2345677777   5666655 66677554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=3.9e-29  Score=232.07  Aligned_cols=228  Identities=18%  Similarity=0.156  Sum_probs=161.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHh-cCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNH-LRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~-l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++...||+|.++.+|+.||||.+++... ..........|..++.. ++||||        +++++++.+++.+|+|||
T Consensus         5 ~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i--------~~~~~~~~~~~~~~lv~E   76 (316)
T cd05620           5 KGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFL--------THLYCTFQTKEHLFFVME   76 (316)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCc--------cCeeEEEEeCCEEEEEEC
Confidence            56788999999999999999999986432 11223345567777775 589999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +....... ..+   .......++.|++.||.|||+++                |+||||||+|||++.++.+|
T Consensus        77 ~~~~g~L~~~i~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivHrDlkp~Nil~~~~~~~k  136 (316)
T cd05620          77 FLNGGDLMFHIQDK-GRF---DLYRATFYAAEIVCGLQFLHSKG----------------IIYRDLKLDNVMLDRDGHIK  136 (316)
T ss_pred             CCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEecCCCHHHeEECCCCCEE
Confidence            99988 43322221 123   34445566779999999999999                99999999999999999999


Q ss_pred             EEecccccccC--CCCCCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFS--KKKPHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~--~~~~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++...  .......+||..|++||+.. ..+ ..+|+|+   ++|+++ .+..||.+.+.....+.+.... ..
T Consensus       137 l~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~-~g~~Pf~~~~~~~~~~~~~~~~-~~  214 (316)
T cd05620         137 IADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEML-IGQSPFHGDDEDELFESIRVDT-PH  214 (316)
T ss_pred             eCccCCCeecccCCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHH-hCCCCCCCCCHHHHHHHHHhCC-CC
Confidence            99999997532  22234567899999999853 234 4566666   556665 4677887665433333222221 11


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.. ........+...+..||..|++..
T Consensus       215 ~~~~-~~~~~~~li~~~l~~dP~~R~~~~  242 (316)
T cd05620         215 YPRW-ITKESKDILEKLFERDPTRRLGVV  242 (316)
T ss_pred             CCCC-CCHHHHHHHHHHccCCHHHcCCCh
Confidence            2211 222345566677778999998753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.96  E-value=6.4e-29  Score=231.21  Aligned_cols=229  Identities=14%  Similarity=0.109  Sum_probs=162.8

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      .+++.+.||+|.++.+++.||||++++... ..........|..++..+. |++|        +++++++.+.+.+|+||
T Consensus         9 g~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i--------~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           9 GKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFL--------TQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             eeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeE--------eeEEEEEecCCEEEEEE
Confidence            357788999999999999999999986543 2223345566888888775 6777        89999999999999999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||++|+ +...... ...+   ....+..++.|++.||.|||+++                |+||||||+|||+++++.+
T Consensus        81 E~~~~g~L~~~~~~-~~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDlkp~Nill~~~~~~  140 (323)
T cd05616          81 EYVNGGDLMYQIQQ-VGRF---KEPHAVFYAAEIAIGLFFLHSKG----------------IIYRDLKLDNVMLDSEGHI  140 (323)
T ss_pred             cCCCCCCHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EEecCCCHHHeEECCCCcE
Confidence            999988 4322222 1223   34455667789999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCC--CCCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccc
Q psy6542         168 RISDLGLACDFSKK--KPHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIE  240 (334)
Q Consensus       168 kl~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  240 (334)
                      ||+|||+++.....  .....+||+.|++||+.. ..+ ..+|+|+   ++|+++ ++..||.+.+.......+..... 
T Consensus       141 kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell-tg~~Pf~~~~~~~~~~~i~~~~~-  218 (323)
T cd05616         141 KIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEML-AGQAPFEGEDEDELFQSIMEHNV-  218 (323)
T ss_pred             EEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHH-hCCCCCCCCCHHHHHHHHHhCCC-
Confidence            99999999854322  234467899999999853 334 4556666   556655 57778876654333333322221 


Q ss_pred             ccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         241 EVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       241 ~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ..+.... ......+...+..+|..|+++.
T Consensus       219 ~~p~~~s-~~~~~li~~~l~~~p~~R~~~~  247 (323)
T cd05616         219 AYPKSMS-KEAVAICKGLMTKHPGKRLGCG  247 (323)
T ss_pred             CCCCcCC-HHHHHHHHHHcccCHHhcCCCC
Confidence            1222222 2344566667788999999864

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.96  E-value=1.7e-28  Score=228.90  Aligned_cols=229  Identities=14%  Similarity=0.169  Sum_probs=164.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|.++.+++.||||++++... +....+.+.+|..++..+ +||||        +++++++.+.+.+|+|||
T Consensus         5 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i--------~~~~~~~~~~~~~~lv~e   76 (327)
T cd05617           5 RGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFL--------VGLHSCFQTTSRLFLVIE   76 (327)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCE--------eeEEEEEEeCCEEEEEEe
Confidence            57788999999999999999999987543 233445677899999888 69999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +....... ..+   ....+..++.||+.||.|||+++                |+||||||+|||+++++.+|
T Consensus        77 ~~~~~~L~~~~~~~-~~l---~~~~~~~~~~qi~~al~~lH~~~----------------ivHrDlkp~Nili~~~~~~k  136 (327)
T cd05617          77 YVNGGDLMFHMQRQ-RKL---PEEHARFYAAEICIALNFLHERG----------------IIYRDLKLDNVLLDADGHIK  136 (327)
T ss_pred             CCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCCHHHEEEeCCCCEE
Confidence            99988 43322221 233   44555667789999999999999                99999999999999999999


Q ss_pred             EEecccccccCC--CCCCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCc---ccch---h
Q psy6542         169 ISDLGLACDFSK--KKPHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSK---PELI---F  235 (334)
Q Consensus       169 l~DFGla~~~~~--~~~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~---~~~i---~  235 (334)
                      |+|||+++....  ......+||+.|++||+.. ..+ ..+|+|+   ++|+++ ++..||........   .+.+   .
T Consensus       137 l~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell-~g~~pf~~~~~~~~~~~~~~~~~~~  215 (327)
T cd05617         137 LTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMM-AGRSPFDIITDNPDMNTEDYLFQVI  215 (327)
T ss_pred             EeccccceeccCCCCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHH-hCCCCCCccCCCcccccHHHHHHHH
Confidence            999999985322  2234467899999999843 334 4566666   556665 46678865432211   1111   1


Q ss_pred             cccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         236 MDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .......+.. .+......+...+..||..|+++.
T Consensus       216 ~~~~~~~p~~-~~~~~~~li~~~L~~dP~~R~~~~  249 (327)
T cd05617         216 LEKPIRIPRF-LSVKASHVLKGFLNKDPKERLGCQ  249 (327)
T ss_pred             HhCCCCCCCC-CCHHHHHHHHHHhccCHHHcCCCC
Confidence            1111122222 223456677777788999999864

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.96  E-value=5.3e-29  Score=231.23  Aligned_cols=228  Identities=17%  Similarity=0.126  Sum_probs=160.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHh-cCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNH-LRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~-l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++...||+|.+..+++.||||+++.... ..........|..+++. ++||||        +++++++.+++.+|+|||
T Consensus         5 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i--------v~~~~~~~~~~~~~lv~e   76 (316)
T cd05619           5 KGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFL--------THLYCTFQTKENLFFVME   76 (316)
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcC--------cceEEEEEeCCEEEEEEe
Confidence            56788999999999999999999986532 11122345567777775 599999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +....... ..+   .......++.|++.||.|||+++                |+||||||+|||++.++.+|
T Consensus        77 y~~~g~L~~~l~~~-~~~---~~~~~~~~~~qi~~al~~LH~~~----------------ivHrdikp~Nil~~~~~~~k  136 (316)
T cd05619          77 YLNGGDLMFHIQSC-HKF---DLPRATFYAAEIICGLQFLHSKG----------------IVYRDLKLDNILLDTDGHIK  136 (316)
T ss_pred             CCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEeCCCCHHHEEECCCCCEE
Confidence            99988 43332221 122   34444567789999999999999                99999999999999999999


Q ss_pred             EEecccccccCC--CCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSK--KKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~--~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++....  .......||..|++||+.. .. +..+|+|+   ++|+++ .+..||.+.+.....+.+..... .
T Consensus       137 l~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~-~G~~pf~~~~~~~~~~~i~~~~~-~  214 (316)
T cd05619         137 IADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEML-IGQSPFHGHDEEELFQSIRMDNP-C  214 (316)
T ss_pred             EccCCcceECCCCCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHH-hCCCCCCCCCHHHHHHHHHhCCC-C
Confidence            999999975432  2234456899999999843 23 44566666   556655 56678876553322222222211 1


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.. .+....+.+...+..+|..|++..
T Consensus       215 ~~~~-~~~~~~~li~~~l~~~P~~R~~~~  242 (316)
T cd05619         215 YPRW-LTREAKDILVKLFVREPERRLGVK  242 (316)
T ss_pred             CCcc-CCHHHHHHHHHHhccCHhhcCCCh
Confidence            1211 222344566677788999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=8.4e-29  Score=230.51  Aligned_cols=227  Identities=17%  Similarity=0.193  Sum_probs=160.4

Q ss_pred             CCCceEEEecee---CCCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSL---KPLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~---~~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++.+.||+|++   ..+++.||||+++....  .......+.+|+++++.++||||        +++++++..++.+|+
T Consensus         6 ~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i--------v~~~~~~~~~~~~~l   77 (323)
T cd05584           6 KGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFI--------VDLIYAFQTGGKLYL   77 (323)
T ss_pred             ecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCch--------hceeeEEecCCeEEE
Confidence            467778888876   46899999999986432  22233456789999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      ||||+.|+ +....... ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.++
T Consensus        78 v~e~~~~~~L~~~~~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~dlkp~Nil~~~~~  137 (323)
T cd05584          78 ILEYLSGGELFMHLERE-GIF---MEDTACFYLSEISLALEHLHQQG----------------IIYRDLKPENILLDAQG  137 (323)
T ss_pred             EEeCCCCchHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHeEECCCC
Confidence            99999998 32222221 122   23344456679999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCC--CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         166 HVRISDLGLACDFSKKK--PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      .+||+|||+++......  .....|++.|++||+...  ....+|+|+   ++|++ ..+..||.+.......+.+....
T Consensus       138 ~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el-l~G~~pf~~~~~~~~~~~~~~~~  216 (323)
T cd05584         138 HVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDM-LTGAPPFTAENRKKTIDKILKGK  216 (323)
T ss_pred             CEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCCCcceecccHHHHHHH-hcCCCCCCCCCHHHHHHHHHcCC
Confidence            99999999997543322  344568999999998532  244677777   55555 55677886655322222222222


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      . ..+.... ....+.+...+..+|..|+..
T Consensus       217 ~-~~~~~~~-~~~~~li~~~l~~~p~~R~~~  245 (323)
T cd05584         217 L-NLPPYLT-PEARDLLKKLLKRNPSSRLGA  245 (323)
T ss_pred             C-CCCCCCC-HHHHHHHHHHcccCHhHcCCC
Confidence            1 2222222 234566777778899999853

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=3.7e-29  Score=232.25  Aligned_cols=228  Identities=17%  Similarity=0.155  Sum_probs=162.6

Q ss_pred             CCCceEEEecee---CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSL---KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~---~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++...||++++   +.+|+.||||++............+..|++++++++||||        +++++++.+++.+|+||
T Consensus         6 ~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~lv~   77 (318)
T cd05582           6 QGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFI--------VKLHYAFQTEGKLYLIL   77 (318)
T ss_pred             eCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCc--------ccEEEEEEcCCEEEEEE
Confidence            356677887765   5789999999998654433334456789999999999999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||+.|+ +...... ...+   ....+..++.||+.||.|||+.+                |+||||||+||++++++.+
T Consensus        78 e~~~~~~L~~~l~~-~~~l---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dlkp~Nil~~~~~~~  137 (318)
T cd05582          78 DFLRGGDLFTRLSK-EVMF---TEEDVKFYLAELALALDHLHSLG----------------IIYRDLKPENILLDEEGHI  137 (318)
T ss_pred             cCCCCCcHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EecCCCCHHHeEECCCCcE
Confidence            999988 3222221 1122   45556677789999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccc
Q psy6542         168 RISDLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIE  240 (334)
Q Consensus       168 kl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  240 (334)
                      ||+|||+++......  .....|++.|++||+.. .. ...+|+|+   ++|+++ ++..||.+.+.......+.... .
T Consensus       138 kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~-tg~~p~~~~~~~~~~~~i~~~~-~  215 (318)
T cd05582         138 KLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEML-TGSLPFQGKDRKETMTMILKAK-L  215 (318)
T ss_pred             EEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeec-cCCCCCCCCCHHHHHHHHHcCC-C
Confidence            999999998654432  33456899999999853 23 44677777   556654 5677886654322222222211 1


Q ss_pred             ccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         241 EVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       241 ~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ..+.... ......+...+..||..|++..
T Consensus       216 ~~p~~~~-~~~~~li~~~l~~~P~~R~~a~  244 (318)
T cd05582         216 GMPQFLS-PEAQSLLRALFKRNPANRLGAG  244 (318)
T ss_pred             CCCCCCC-HHHHHHHHHHhhcCHhHcCCCC
Confidence            1222222 2344566777778999998865

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.96  E-value=8e-29  Score=233.85  Aligned_cols=184  Identities=16%  Similarity=0.117  Sum_probs=142.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC------eEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN------SHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~------~~~   85 (334)
                      .++...||++.+..+|+.||||.+..........+.+.+|+.+++.++||||        +++++++...+      .+|
T Consensus        31 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~~~~~~~  102 (359)
T cd07876          31 SGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNI--------ISLLNVFTPQKSLEEFQDVY  102 (359)
T ss_pred             cCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCE--------eeeeeeeccCCCccccceeE
Confidence            5677899999999999999999998665444455667789999999999999        99999987443      579


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||||+++++......   .+   ....+..++.|++.||.|||+++                |+||||||+||+++.++
T Consensus       103 lv~e~~~~~l~~~~~~---~~---~~~~~~~~~~qi~~~L~~LH~~~----------------ivHrDlkp~NIl~~~~~  160 (359)
T cd07876         103 LVMELMDANLCQVIHM---EL---DHERMSYLLYQMLCGIKHLHSAG----------------IIHRDLKPSNIVVKSDC  160 (359)
T ss_pred             EEEeCCCcCHHHHHhc---cC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCHHHEEECCCC
Confidence            9999999985333221   12   33445567789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCC-CCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++...... .....||..|++||+.. . ....+|+|+   ++|++ .++.+||.+.+
T Consensus       161 ~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el-~tg~~pf~~~~  226 (359)
T cd07876         161 TLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEL-VKGSVIFQGTD  226 (359)
T ss_pred             CEEEecCCCccccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHH-HhCCCCCCCCC
Confidence            99999999998654433 23456789999999853 2 344567777   45555 55677887654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=4.7e-29  Score=234.13  Aligned_cols=187  Identities=17%  Similarity=0.201  Sum_probs=147.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.+..+|+.||||++++... .......+.+|+++++.++|+||        +++++++.+++.+|+||||
T Consensus        11 ~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~~~~~lv~e~   82 (350)
T cd05573          11 RGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWI--------VKLYYSFQDEEHLYLVMEY   82 (350)
T ss_pred             eCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCc--------cchhhheecCCeEEEEEcC
Confidence            57788999999999999999999986543 22344567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +..+.... ..+   .......++.|++.||.|||+++                |+||||||+|||++.++.+||
T Consensus        83 ~~~~~L~~~l~~~-~~l---~~~~~~~i~~qi~~aL~~LH~~g----------------iiH~Dlkp~NIll~~~~~~kL  142 (350)
T cd05573          83 MPGGDLMNLLIRK-DVF---PEETARFYIAELVLALDSVHKLG----------------FIHRDIKPDNILIDADGHIKL  142 (350)
T ss_pred             CCCCCHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCCHHHeEECCCCCEEe
Confidence            9887 43332222 233   44555667789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-------------------------------CCccccCcccccccccc--ccCCcceeeh--hHHHH
Q psy6542         170 SDLGLACDFSKKK-------------------------------PHASVESDCILHGYIKK--LGGPFVSAWQ--TRYAK  214 (334)
Q Consensus       170 ~DFGla~~~~~~~-------------------------------~~~~~~t~~~~~~~v~~--~~~~~~~~w~--~~~~~  214 (334)
                      +|||++.......                               .....||+.|++||+..  .....+|+|+  ++++.
T Consensus       143 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~e  222 (350)
T cd05573         143 ADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYE  222 (350)
T ss_pred             ecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhh
Confidence            9999998665443                               23456889999999843  2345677777  44444


Q ss_pred             HcCCCCCCCCCC
Q psy6542         215 LFPNRLELHPES  226 (334)
Q Consensus       215 l~~~~~~~~~~~  226 (334)
                      |..+..||.+.+
T Consensus       223 ll~g~~Pf~~~~  234 (350)
T cd05573         223 MLYGFPPFYSDT  234 (350)
T ss_pred             hccCCCCCCCCC
Confidence            556777887665

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.96  E-value=5.1e-28  Score=225.99  Aligned_cols=185  Identities=14%  Similarity=0.177  Sum_probs=147.6

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++...||++.++.+|..||+|.+..... ......+.+|+++++.++||||        +++++++..++.+|+||||
T Consensus        14 g~G~~g~V~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~   84 (331)
T cd06649          14 GAGNGGVVTKVQHKPSGLIMARKLIHLEIK-PAIRNQIIRELQVLHECNSPYI--------VGFYGAFYSDGEISICMEH   84 (331)
T ss_pred             cCCCCEEEEEEEECCCCcEEEEEEeecccC-HHHHHHHHHHHHHHHHCCCCCC--------CeEEEEEEECCEEEEEeec
Confidence            457888999999999999999999986433 3345678889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++|+ +..+.... ..+   ....+..++.|++.||.|||++ +                |+||||||+|||+++++.+|
T Consensus        85 ~~~~~L~~~l~~~-~~~---~~~~~~~~~~~i~~~l~~lH~~~~----------------ivH~dlkp~Nil~~~~~~~k  144 (331)
T cd06649          85 MDGGSLDQVLKEA-KRI---PEEILGKVSIAVLRGLAYLREKHQ----------------IMHRDVKPSNILVNSRGEIK  144 (331)
T ss_pred             CCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHhhcCC----------------EEcCCCChhhEEEcCCCcEE
Confidence            9988 54443322 122   4455667778999999999985 5                99999999999999999999


Q ss_pred             EEecccccccCCCCCCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKPHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |+|||++............|+..|++||+...  .+..+|+|+   ++|+++ .+..||...
T Consensus       145 l~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~-tg~~p~~~~  205 (331)
T cd06649         145 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELA-IGRYPIPPP  205 (331)
T ss_pred             EccCcccccccccccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHH-hCCCCCCCC
Confidence            99999998776655556678999999998532  344567777   556654 566677543

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0577|consensus

Probab=99.96  E-value=6.5e-30  Score=241.45  Aligned_cols=229  Identities=15%  Similarity=0.047  Sum_probs=171.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      -||++-||-|++..+.+.||||.+..... ....-+.+..|+..|++++|||+        |.+.++|-.....|+||||
T Consensus        36 HGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPnt--------ieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   36 HGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNT--------IEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             CCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCc--------ccccceeeccchHHHHHHH
Confidence            47889999999999999999999986544 22233467789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |-|. .|.+--++ +.+   .+-.+..|+.+.+.||.|||+.+                .||||||.-|||+++.|.|||
T Consensus       108 ClGSAsDlleVhk-Kpl---qEvEIAAi~~gaL~gLaYLHS~~----------------~IHRDiKAGNILLse~g~VKL  167 (948)
T KOG0577|consen  108 CLGSASDLLEVHK-KPL---QEVEIAAITHGALQGLAYLHSHN----------------RIHRDIKAGNILLSEPGLVKL  167 (948)
T ss_pred             HhccHHHHHHHHh-ccc---hHHHHHHHHHHHHHHHHHHHHhh----------------HHhhhccccceEecCCCeeee
Confidence            9999 55443332 233   34445667789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCccccccccc-----cccCCcceeeh--hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIK-----KLGGPFVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~-----~~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||.|....+  .++++|||++|+|||.     ..+..+.|+|+  +.-..++-..+|.+.-+..++.--|......++
T Consensus       168 aDFGSAsi~~P--AnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtL  245 (948)
T KOG0577|consen  168 ADFGSASIMAP--ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTL  245 (948)
T ss_pred             ccccchhhcCc--hhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCC
Confidence            99999976554  4578999999999982     23355778888  333455777778766654433222333333344


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...-|...=..++..++.+-|..|.+++
T Consensus       246 qs~eWS~~F~~Fvd~CLqKipqeRptse  273 (948)
T KOG0577|consen  246 QSNEWSDYFRNFVDSCLQKIPQERPTSE  273 (948)
T ss_pred             CCchhHHHHHHHHHHHHhhCcccCCcHH
Confidence            4444443334566777777777777765

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.96  E-value=9.6e-29  Score=230.14  Aligned_cols=227  Identities=17%  Similarity=0.150  Sum_probs=160.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHH---HhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIF---NHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il---~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++.+.||+|.+..+|+.||||++++... .....+.+.+|.+++   +.++||||        +++++++.+++.+|+|
T Consensus         9 ~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i--------~~~~~~~~~~~~~~lv   80 (324)
T cd05589           9 RGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFL--------VNLFACFQTEDHVCFV   80 (324)
T ss_pred             ecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCCh--------hceeeEEEcCCEEEEE
Confidence            47788999999999999999999986532 222334556666654   56789999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||++|+ +......  ..+   .......++.|++.||.|||+.+                ++||||||+||++++++.
T Consensus        81 ~E~~~~~~L~~~~~~--~~l---~~~~~~~~~~qi~~al~~lH~~~----------------ivHrdlkp~Nill~~~~~  139 (324)
T cd05589          81 MEYAAGGDLMMHIHT--DVF---SEPRAVFYAACVVLGLQYLHENK----------------IVYRDLKLDNLLLDTEGF  139 (324)
T ss_pred             EcCCCCCcHHHHhhc--CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEecCCCHHHeEECCCCc
Confidence            9999998 4332221  123   44455667789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCC--CCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccc
Q psy6542         167 VRISDLGLACDFSKK--KPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQI  239 (334)
Q Consensus       167 vkl~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  239 (334)
                      +||+|||+++.....  .....+|++.|++||+.. .. ...+|+|+   ++|+++ .+..||.+.+.......+.....
T Consensus       140 ~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~-~G~~pf~~~~~~~~~~~i~~~~~  218 (324)
T cd05589         140 VKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEML-VGESPFPGDDEEEVFDSIVNDEV  218 (324)
T ss_pred             EEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHH-hCCCCCCCCCHHHHHHHHHhCCC
Confidence            999999998754322  233467899999999853 23 34566666   556665 56678766543222222222211


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      . .+... +......+..++..||..|++..
T Consensus       219 ~-~p~~~-~~~~~~li~~~L~~dP~~R~~~~  247 (324)
T cd05589         219 R-YPRFL-SREAISIMRRLLRRNPERRLGSG  247 (324)
T ss_pred             C-CCCCC-CHHHHHHHHHHhhcCHhHcCCCC
Confidence            1 22122 22345677777788999998643

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.96  E-value=9.5e-29  Score=230.19  Aligned_cols=228  Identities=14%  Similarity=0.120  Sum_probs=162.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCC-CCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRN-EPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h-~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|.++.+|+.||||++++... .....+.+..|..+++.+.| ++|        +++++++.+.+.+|+|||
T Consensus        10 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i--------~~~~~~~~~~~~~~lv~E   81 (323)
T cd05615          10 KGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFL--------TQLHSCFQTVDRLYFVME   81 (323)
T ss_pred             ecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCch--------hheeeEEecCCEEEEEEc
Confidence            47788999999999999999999986533 22233456778999988876 456        789999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +....... ..+   .....+.++.|++.||.|||+++                |+||||||+|||+++++.+|
T Consensus        82 y~~~g~L~~~i~~~-~~l---~~~~~~~i~~qi~~al~~lH~~~----------------ivHrDikp~Nill~~~~~ik  141 (323)
T cd05615          82 YVNGGDLMYHIQQV-GKF---KEPQAVFYAAEISVGLFFLHRRG----------------IIYRDLKLDNVMLDSEGHIK  141 (323)
T ss_pred             CCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCCHHHeEECCCCCEE
Confidence            99988 43332221 223   44555677789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++......  .....||+.|++||+.. .. +..+|+|+   ++|+++ ++.+||.+.+.....+.+..... .
T Consensus       142 L~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell-tG~~pf~~~~~~~~~~~i~~~~~-~  219 (323)
T cd05615         142 IADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEML-AGQPPFDGEDEDELFQSIMEHNV-S  219 (323)
T ss_pred             EeccccccccCCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHH-hCCCCCCCCCHHHHHHHHHhCCC-C
Confidence            99999998643322  33456899999999853 23 34566666   556655 57778876653323333322222 1


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.... ....+.+...+..+|..|++..
T Consensus       220 ~p~~~~-~~~~~li~~~l~~~p~~R~~~~  247 (323)
T cd05615         220 YPKSLS-KEAVSICKGLMTKHPSKRLGCG  247 (323)
T ss_pred             CCccCC-HHHHHHHHHHcccCHhhCCCCC
Confidence            222222 2344566666788999999864

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.96  E-value=7.9e-29  Score=231.10  Aligned_cols=188  Identities=16%  Similarity=0.201  Sum_probs=146.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.++.+|+.||||+++.... .....+.+.+|+.+++.++|+||        +++++++.+++.+|+||||
T Consensus        11 ~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i--------~~~~~~~~~~~~~~lv~e~   82 (330)
T cd05601          11 RGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWI--------PQLQYAFQDKDNLYLVMEY   82 (330)
T ss_pred             eccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCC--------cceeeEEecCCeEEEEECC
Confidence            56778999999999999999999986543 33345567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.......+   ....+..++.|++.||.|||+.+                |+||||||+|||++.++.+||
T Consensus        83 ~~~~~L~~~l~~~~~~l---~~~~~~~~~~qi~~aL~~lH~~~----------------i~H~Dlkp~NIll~~~~~~kL  143 (330)
T cd05601          83 QPGGDLLSLLNRYEDQF---DEDMAQFYLAELVLAIHSVHQMG----------------YVHRDIKPENVLIDRTGHIKL  143 (330)
T ss_pred             CCCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEcccCchHheEECCCCCEEe
Confidence            9888 444433322233   34445566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC---CccccCcccccccccc-------cc-CCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP---HASVESDCILHGYIKK-------LG-GPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       170 ~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-------~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      +|||++........   ....||+.|++||+..       .. +..+|+|+   ++|++ ..+..||...+.
T Consensus       144 ~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el-~~g~~Pf~~~~~  214 (330)
T cd05601         144 ADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEM-IYGRSPFHEGTS  214 (330)
T ss_pred             ccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeee-ccCCCCCCCCCH
Confidence            99999987654432   2346889999999843       22 34567777   45555 556778866543

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0662|consensus

Probab=99.96  E-value=3.9e-29  Score=205.50  Aligned_cols=187  Identities=18%  Similarity=0.158  Sum_probs=152.1

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      +--+-|++|++++|++.||+|.++.+..++.+-....+|+.+++.++|.||        |+++++...++.+-+|+|||+
T Consensus        13 gtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhkni--------vrl~dvlhsdkkltlvfe~cd   84 (292)
T KOG0662|consen   13 GTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI--------VRLHDVLHSDKKLTLVFEFCD   84 (292)
T ss_pred             CcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcce--------eehhhhhccCceeEEeHHHhh
Confidence            445689999999999999999999988877777778889999999999999        999999999999999999999


Q ss_pred             CChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEec
Q psy6542          93 GPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDL  172 (334)
Q Consensus        93 g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DF  172 (334)
                      .++.....+-.+..   ..+.+..++.|++.||.|+|+++                ++||||||+|.||+.+|.+|++||
T Consensus        85 qdlkkyfdslng~~---d~~~~rsfmlqllrgl~fchshn----------------vlhrdlkpqnllin~ngelkladf  145 (292)
T KOG0662|consen   85 QDLKKYFDSLNGDL---DPEIVRSFMLQLLRGLGFCHSHN----------------VLHRDLKPQNLLINRNGELKLADF  145 (292)
T ss_pred             HHHHHHHHhcCCcC---CHHHHHHHHHHHHhhhhhhhhhh----------------hhhccCCcceEEeccCCcEEeccc
Confidence            98544434333344   34444555669999999999999                999999999999999999999999


Q ss_pred             ccccccCCCCCCc--cccCcccccccc---ccccCCcceeeh--hHHHHHc-CCCCCCCCCC
Q psy6542         173 GLACDFSKKKPHA--SVESDCILHGYI---KKLGGPFVSAWQ--TRYAKLF-PNRLELHPES  226 (334)
Q Consensus       173 Gla~~~~~~~~~~--~~~t~~~~~~~v---~~~~~~~~~~w~--~~~~~l~-~~~~~~~~~~  226 (334)
                      |+|+.++-....-  -.-|.+|.||.+   .+.+.+.-|+|+  |+++.+. .+++-|.|.+
T Consensus       146 glarafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~d  207 (292)
T KOG0662|consen  146 GLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND  207 (292)
T ss_pred             chhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCc
Confidence            9999988775332  234788999998   456677778888  7776665 4555444443

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.96  E-value=2.3e-28  Score=230.31  Aligned_cols=179  Identities=15%  Similarity=0.141  Sum_probs=141.2

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++...||+|.+..+|+.||||++..... ....+.+.+|+++++.++|+||        +++++++..++.+|+||||
T Consensus        83 g~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~  153 (353)
T PLN00034         83 GSGAGGTVYKVIHRPTGRLYALKVIYGNHE-DTVRRQICREIEILRDVNHPNV--------VKCHDMFDHNGEIQVLLEF  153 (353)
T ss_pred             cCCCCeEEEEEEECCCCCEEEEEEEecCCc-HHHHHHHHHHHHHHHhCCCCCc--------ceeeeEeccCCeEEEEEec
Confidence            457788999999999999999999975443 3345678899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +...        .......+..++.||+.||.|||+++                |+||||||+|||+++++.+||
T Consensus       154 ~~~~~L~~~--------~~~~~~~~~~i~~qi~~aL~~LH~~~----------------ivHrDlkp~NIll~~~~~~kL  209 (353)
T PLN00034        154 MDGGSLEGT--------HIADEQFLADVARQILSGIAYLHRRH----------------IVHRDIKPSNLLINSAKNVKI  209 (353)
T ss_pred             CCCCccccc--------ccCCHHHHHHHHHHHHHHHHHHHHCC----------------EeecCCCHHHEEEcCCCCEEE
Confidence            9998 3211        11133445667889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCccccccccccc------c-CCcceeeh---hHHHHHcCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKKL------G-GPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~------~-~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      +|||+++.+....  .....|+..|++||+...      . ...+|+|+   ++|+++ .+..||.
T Consensus       210 ~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~-~g~~pf~  274 (353)
T PLN00034        210 ADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFY-LGRFPFG  274 (353)
T ss_pred             cccccceecccccccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHH-hCCCCCC
Confidence            9999998765432  234568999999997421      1 22566666   556655 4556664

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.96  E-value=2e-28  Score=229.09  Aligned_cols=244  Identities=16%  Similarity=0.063  Sum_probs=165.2

Q ss_pred             CCCCceEEEecee-----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecC-Ce
Q psy6542          11 SRVSKWRVKPPSL-----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEP-NS   83 (334)
Q Consensus        11 ~~~~~~~V~~a~~-----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~-~~   83 (334)
                      ..++...||+|.+     ..++..||||+++...... ..+.+.+|+.+++.+ +||||        +++++++... +.
T Consensus        16 G~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~~h~ni--------v~~~~~~~~~~~~   86 (338)
T cd05102          16 GHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATAS-EHKALMSELKILIHIGNHLNV--------VNLLGACTKPNGP   86 (338)
T ss_pred             ccCCcceEEEEEEeccCCcccchhhheeccccccchH-HHHHHHHHHHHHHHhccCcce--------eeEEeEecCCCCc
Confidence            4678889999974     3556789999998544322 345678899999999 89999        9999988754 56


Q ss_pred             EEEEEEccCCC-h-hHHhhhhhhh--------------------------------------------------------
Q psy6542          84 HYIIGVRQSGP-K-DQISRSKINR--------------------------------------------------------  105 (334)
Q Consensus        84 ~~ivmEy~~g~-l-~~l~~~~~~~--------------------------------------------------------  105 (334)
                      +|+||||++|| + +++.......                                                        
T Consensus        87 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (338)
T cd05102          87 LMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDL  166 (338)
T ss_pred             eEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcccc
Confidence            89999999998 4 3332211000                                                        


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCC-
Q psy6542         106 -YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP-  183 (334)
Q Consensus       106 -~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~-  183 (334)
                       ........++.++.|++.||.|||+++                |+||||||+|||++.++.+||+|||+++....... 
T Consensus       167 ~~~~l~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~  230 (338)
T cd05102         167 WKSPLTMEDLICYSFQVARGMEFLASRK----------------CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY  230 (338)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHCC----------------EECCCCccceEEEcCCCcEEEeecccccccccCcch
Confidence             011234456677889999999999999                99999999999999999999999999986543322 


Q ss_pred             ---CccccCccccccccc-ccc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccccccccccHhHHHHH
Q psy6542         184 ---HASVESDCILHGYIK-KLG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCV  255 (334)
Q Consensus       184 ---~~~~~t~~~~~~~v~-~~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i  255 (334)
                         ....++..|++||+. ... +..+|+|+   ++|+++..+..||.+....   +.                     +
T Consensus       231 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~---~~---------------------~  286 (338)
T cd05102         231 VRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIN---EE---------------------F  286 (338)
T ss_pred             hcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCcc---HH---------------------H
Confidence               122345779999974 333 44566666   7778877677787553311   00                     0


Q ss_pred             HHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         256 QLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       256 ~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                      ...+.....  ..    .....++.+.+  +...|...+|..|| +.++++.+.+..
T Consensus       287 ~~~~~~~~~--~~----~~~~~~~~l~~--li~~cl~~dp~~RPs~~el~~~l~~~~  335 (338)
T cd05102         287 CQRLKDGTR--MR----APENATPEIYR--IMLACWQGDPKERPTFSALVEILGDLL  335 (338)
T ss_pred             HHHHhcCCC--CC----CCCCCCHHHHH--HHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            001101000  00    01223334445  77778888888888 888888777643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0599|consensus

Probab=99.96  E-value=1.2e-29  Score=220.45  Aligned_cols=228  Identities=18%  Similarity=0.149  Sum_probs=166.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc------chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH------ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~------~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      |+.+--|-.+-+++||+.+|+|++.....      .........+|++||+++ .||+|        +++.|+|+++..+
T Consensus        27 rgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~I--------I~l~D~yes~sF~   98 (411)
T KOG0599|consen   27 RGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYI--------IDLQDVYESDAFV   98 (411)
T ss_pred             ccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcE--------EEeeeeccCcchh
Confidence            34445567788899999999999976543      233445667899999997 69999        9999999999999


Q ss_pred             EEEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          85 YIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        85 ~ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      ++|+|.|+-|  +|++...  -.+   +++....++.|+..|++|||.++                |+||||||+|||++
T Consensus        99 FlVFdl~prGELFDyLts~--Vtl---SEK~tR~iMrqlfegVeylHa~~----------------IVHRDLKpENILld  157 (411)
T KOG0599|consen   99 FLVFDLMPRGELFDYLTSK--VTL---SEKETRRIMRQLFEGVEYLHARN----------------IVHRDLKPENILLD  157 (411)
T ss_pred             hhhhhhcccchHHHHhhhh--eee---cHHHHHHHHHHHHHHHHHHHHhh----------------hhhcccChhheeec
Confidence            9999999988  5555332  234   34444566679999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCCCC-CccccCccccccccc-------cccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCc
Q psy6542         163 EHGHVRISDLGLACDFSKKKP-HASVESDCILHGYIK-------KLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSK  230 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~-------~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~  230 (334)
                      ++.++||+|||+|+.+..+.. ...||||.|++||..       ..||. ..|.|+   ++|.++++..+.|+... .-.
T Consensus       158 dn~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQ-mlM  236 (411)
T KOG0599|consen  158 DNMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQ-MLM  236 (411)
T ss_pred             cccceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHH-HHH
Confidence            999999999999998888764 457999999999972       23455 456666   56666665554433322 111


Q ss_pred             ccchhcccccccccccccH---hHHHHHHHhhccCchhhcCCC
Q psy6542         231 PELIFMDQIEEVSQDLITV---KGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...|+. .-+.+.+..|..   ..++.|...+.-||..|++..
T Consensus       237 LR~Ime-GkyqF~speWadis~~~KdLIsrlLqVdp~~Ritak  278 (411)
T KOG0599|consen  237 LRMIME-GKYQFRSPEWADISATVKDLISRLLQVDPTKRITAK  278 (411)
T ss_pred             HHHHHh-cccccCCcchhhccccHHHHHHHHHeeCchhcccHH
Confidence            112222 223344444443   456677788888999998864

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.96  E-value=1.2e-28  Score=228.93  Aligned_cols=227  Identities=15%  Similarity=0.144  Sum_probs=162.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++...||+|.++.+++.||||++++... .......+..|.++++.+ +||||        +++++++.+.+.+|+|||
T Consensus         5 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i--------~~~~~~~~~~~~~~lv~e   76 (318)
T cd05570           5 KGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFL--------TQLHSCFQTKDRLFFVME   76 (318)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCc--------cceeeEEEcCCEEEEEEc
Confidence            46778999999999999999999986543 222334566788899887 69999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +....... ..+   .......++.|++.||.|||+.+                |+||||||+||++++++.+|
T Consensus        77 ~~~~~~L~~~~~~~-~~l---~~~~~~~~~~qi~~~l~~LH~~~----------------ivH~dlkp~Nill~~~~~~k  136 (318)
T cd05570          77 YVNGGDLMFHIQRS-GRF---DEPRARFYAAEIVLGLQFLHERG----------------IIYRDLKLDNVLLDSEGHIK  136 (318)
T ss_pred             CCCCCCHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEccCCCHHHeEECCCCcEE
Confidence            99988 43332221 223   44555667789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCC--CCCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKK--KPHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+++.....  .....+|++.|++||+..  ..+..+|+|+   ++|++ ..+..||.+.+.......+..... .
T Consensus       137 l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l-~~G~~pf~~~~~~~~~~~i~~~~~-~  214 (318)
T cd05570         137 IADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEM-LAGQSPFEGDDEDELFQSILEDEV-R  214 (318)
T ss_pred             ecccCCCeecCcCCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHH-hhCCCCCCCCCHHHHHHHHHcCCC-C
Confidence            9999999753222  233456899999999853  2345677777   55555 456778876653322222222221 1


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      .+.. .+....+.+...+..||..|++.
T Consensus       215 ~~~~-~~~~~~~li~~~l~~dP~~R~s~  241 (318)
T cd05570         215 YPRW-LSKEAKSILKSFLTKNPEKRLGC  241 (318)
T ss_pred             CCCc-CCHHHHHHHHHHccCCHHHcCCC
Confidence            2211 12234456666667889999886

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.4e-28  Score=235.00  Aligned_cols=175  Identities=14%  Similarity=0.046  Sum_probs=137.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..+++.||||...        ...+.+|+++++.++||||        +++++++..+...++||||+
T Consensus       102 ~G~~g~V~~~~d~~~~~~vaiK~~~--------~~~~~~E~~il~~l~HpnI--------v~~~~~~~~~~~~~lv~e~~  165 (391)
T PHA03212        102 PGAEGFAFACIDNKTCEHVVIKAGQ--------RGGTATEAHILRAINHPSI--------IQLKGTFTYNKFTCLILPRY  165 (391)
T ss_pred             CCCCeEEEEEEECCCCCEEEEechh--------hhhhHHHHHHHHhCCCCCC--------CCEeEEEEECCeeEEEEecC
Confidence            5788899999999999999999654        2345679999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      .+++....... ..+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.+||+|
T Consensus       166 ~~~L~~~l~~~-~~l---~~~~~~~i~~qi~~aL~ylH~~~----------------IvHrDiKP~NIll~~~~~vkL~D  225 (391)
T PHA03212        166 KTDLYCYLAAK-RNI---AICDILAIERSVLRAIQYLHENR----------------IIHRDIKAENIFINHPGDVCLGD  225 (391)
T ss_pred             CCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCChHhEEEcCCCCEEEEe
Confidence            88743322221 122   34456677889999999999999                99999999999999999999999


Q ss_pred             cccccccCCC---CCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCC
Q psy6542         172 LGLACDFSKK---KPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       172 FGla~~~~~~---~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                      ||+|+.....   ......||+.|++||+.. .. +..+|+|+   ++|+++.+..+.|
T Consensus       226 FG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~  284 (391)
T PHA03212        226 FGAACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLF  284 (391)
T ss_pred             CCcccccccccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcC
Confidence            9999753322   223457899999999853 23 44566666   6677766555433

>KOG0604|consensus

Probab=99.96  E-value=2.9e-29  Score=220.55  Aligned_cols=223  Identities=14%  Similarity=0.071  Sum_probs=162.2

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeec----CCeEEEE
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSE----PNSHYII   87 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~----~~~~~iv   87 (334)
                      +..++|-.|.++.||+.+|+|++.       ......+|+++.=+. .||||        |.+.++|+.    ...+.||
T Consensus        73 GinGkV~~C~~k~T~ekfALKvL~-------Ds~KARrEVeLHw~~s~h~~i--------V~IidVyeNs~~~rkcLLiV  137 (400)
T KOG0604|consen   73 GINGKVVQCVHKRTQEKFALKVLL-------DSPKARREVELHWMASGHPHI--------VSIIDVYENSYQGRKCLLIV  137 (400)
T ss_pred             ccCCceEEEEeccchhhhHHHHHh-------cCHHHHhHhhhhhhhcCCCce--------EEeehhhhhhccCceeeEee
Confidence            456799999999999999999998       233445689885554 69999        999999873    3568999


Q ss_pred             EEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-
Q psy6542          88 GVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-  164 (334)
Q Consensus        88 mEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-  164 (334)
                      ||+++||  +..+..+....|.+   +.+..|+.||+.|+.|||+.+                |.||||||+|+|.... 
T Consensus       138 mE~meGGeLfsriq~~g~~afTE---rea~eI~~qI~~Av~~lH~~n----------------IAHRDlKpENLLyt~t~  198 (400)
T KOG0604|consen  138 MECMEGGELFSRIQDRGDQAFTE---REASEIMKQIGLAVRYLHSMN----------------IAHRDLKPENLLYTTTS  198 (400)
T ss_pred             eecccchHHHHHHHHcccccchH---HHHHHHHHHHHHHHHHHHhcc----------------hhhccCChhheeeecCC
Confidence            9999999  55555554445644   444556669999999999999                9999999999999654 


Q ss_pred             --CCEEEEecccccccCCCC-CCccccCccccccccc-cccCCccee-eh--hHHHHHcCCCCCCCCCCCCCc-ccc---
Q psy6542         165 --GHVRISDLGLACDFSKKK-PHASVESDCILHGYIK-KLGGPFVSA-WQ--TRYAKLFPNRLELHPESGQSK-PEL---  233 (334)
Q Consensus       165 --~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~-~~~~~~~~~-w~--~~~~~l~~~~~~~~~~~~~~~-~~~---  233 (334)
                        ..+||+|||+|+...... ..+.|-||+|.+||++ ...|..+.| |+  ++.+.+.++-+||++...... ++.   
T Consensus       199 ~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~r  278 (400)
T KOG0604|consen  199 PNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRR  278 (400)
T ss_pred             CCcceEecccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhH
Confidence              569999999998766433 4556678889999885 344666655 44  555556677778888765432 322   


Q ss_pred             hhcccccccccccccH---hHHHHHHHhhccCchhhcCCC
Q psy6542         234 IFMDQIEEVSQDLITV---KGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       234 i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      |.. ..+++|..-|+.   ..++.|...+..+|..|++-.
T Consensus       279 I~~-gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~  317 (400)
T KOG0604|consen  279 IRT-GQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIE  317 (400)
T ss_pred             hhc-cCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHH
Confidence            222 334566666655   234456666677999999854

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.96  E-value=1.1e-28  Score=234.13  Aligned_cols=187  Identities=17%  Similarity=0.152  Sum_probs=144.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC-----eEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN-----SHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~-----~~~i   86 (334)
                      +++...||++.+..+|+.||||.+..........+.+.+|+++++.++|+||        +++++++...+     .+|+
T Consensus        10 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~~~~~~l   81 (372)
T cd07853          10 YGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNV--------LSALDILQPPHIDPFEEIYV   81 (372)
T ss_pred             eCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCc--------CCHhheecCCCccccceEEE
Confidence            5778899999999999999999997654443445678889999999999999        99999998776     7999


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||+.+++....... ..+   ....+..++.||+.||.|||+.+                ++||||||+|||+++++.
T Consensus        82 v~e~~~~~l~~~~~~~-~~l---~~~~~~~~~~qi~~aL~~LH~~~----------------ivH~dlkp~Nili~~~~~  141 (372)
T cd07853          82 VTELMQSDLHKIIVSP-QPL---SSDHVKVFLYQILRGLKYLHSAG----------------ILHRDIKPGNLLVNSNCV  141 (372)
T ss_pred             EeeccccCHHHHHhcC-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeCCCCChHHEEECCCCC
Confidence            9999998853332221 122   44556677789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC---CccccCccccccccccc--c-CCcceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKP---HASVESDCILHGYIKKL--G-GPFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~~--~-~~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      +||+|||+++.......   ....++..|++||+...  . ...+|+|+  ++++.|.++.+||.+.+
T Consensus       142 ~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  209 (372)
T cd07853         142 LKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQS  209 (372)
T ss_pred             EEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCC
Confidence            99999999986543322   22356888999997532  2 34566666  44444456777887665

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.96  E-value=1e-28  Score=232.77  Aligned_cols=185  Identities=17%  Similarity=0.125  Sum_probs=143.9

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC------CeE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP------NSH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~------~~~   84 (334)
                      .+++...||+|.+..+++.||||.+..........+.+.+|+.+++.++||||        +++++++...      ..+
T Consensus        26 g~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~~~~~~   97 (355)
T cd07874          26 GSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI--------ISLLNVFTPQKSLEEFQDV   97 (355)
T ss_pred             eecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCch--------hceeeeeecccccccccee
Confidence            35778899999999999999999998765544455677789999999999999        9999988643      357


Q ss_pred             EEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          85 YIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        85 ~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      |+||||+++++......   .+   ....+..++.|++.||.|||+++                |+||||||+|||++++
T Consensus        98 ~lv~e~~~~~l~~~~~~---~l---~~~~~~~~~~qi~~aL~~LH~~g----------------ivHrDikp~Nill~~~  155 (355)
T cd07874          98 YLVMELMDANLCQVIQM---EL---DHERMSYLLYQMLCGIKHLHSAG----------------IIHRDLKPSNIVVKSD  155 (355)
T ss_pred             EEEhhhhcccHHHHHhh---cC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCChHHEEECCC
Confidence            99999999985332222   12   34445667789999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCC-CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKKP-HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.+||+|||+++....... ....||..|++||+.. .. ...+|+|+   ++|++ ..+..||.+.+
T Consensus       156 ~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el-~~g~~pf~~~~  222 (355)
T cd07874         156 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM-VRHKILFPGRD  222 (355)
T ss_pred             CCEEEeeCcccccCCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHH-HhCCCCCCCCC
Confidence            9999999999987655432 3456789999999843 23 44566677   45555 55666776654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG0584|consensus

Probab=99.96  E-value=1.2e-29  Score=241.87  Aligned_cols=182  Identities=15%  Similarity=0.121  Sum_probs=152.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCe--EEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNS--HYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~--~~iv   87 (334)
                      ||.+=.||+|.+..+|..||--.++-...  .....++|..|+.+|+.|+||||        |++|+++.+...  +-+|
T Consensus        50 rGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NI--------irfy~SW~d~~n~~in~i  121 (632)
T KOG0584|consen   50 RGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNI--------IRFYDSWVDTDNKTINFI  121 (632)
T ss_pred             cccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCce--------eeeeeheecCCCceeeee
Confidence            66677999999999999998766654443  44456789999999999999999        999999997655  8889


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-C
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-G  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-~  165 (334)
                      +|++.+| +....    +++.....+.+..|+.||+.||.|||++.              |||||||||.+||+|+.+ |
T Consensus       122 TEL~TSGtLr~Y~----kk~~~vn~kaik~W~RQILkGL~yLHs~~--------------PPIIHRDLKCDNIFinG~~G  183 (632)
T KOG0584|consen  122 TELFTSGTLREYR----KKHRRVNIKAIKSWCRQILKGLVYLHSQD--------------PPIIHRDLKCDNIFVNGNLG  183 (632)
T ss_pred             eecccCCcHHHHH----HHhccCCHHHHHHHHHHHHHHhhhhhcCC--------------CCccccccccceEEEcCCcC
Confidence            9999888 42221    22233356677899999999999999998              889999999999999876 9


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccccccCCcceeeh----hHHHHHcCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPFVSAWQ----TRYAKLFPNR  219 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~~w~----~~~~~l~~~~  219 (334)
                      .|||+|+|||+...........|||.+|+||+....|....|++    |+.||.+++-
T Consensus       184 ~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eY  241 (632)
T KOG0584|consen  184 EVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEY  241 (632)
T ss_pred             ceeecchhHHHHhhccccceeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccC
Confidence            99999999999999998888999999999999998888777776    8888866554

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=5.1e-28  Score=221.08  Aligned_cols=188  Identities=17%  Similarity=0.160  Sum_probs=145.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc-hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE-SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~-~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||++.+..+++.||||.+...... ......+.+|+.+++.++||||        +++++.+.+++.+|+||||
T Consensus        10 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~   81 (285)
T cd05605          10 KGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFV--------VSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             cCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCE--------eeeeeeecCCCeEEEEEec
Confidence            567789999999999999999999865432 2233456789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +.........  .......+..++.|++.||.|||+.+                ++||||||+||++++++.++|
T Consensus        82 ~~~~~L~~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~dlkp~Nil~~~~~~~~l  143 (285)
T cd05605          82 MNGGDLKFHIYNMGN--PGFDEERAVFYAAEITCGLEDLHRER----------------IVYRDLKPENILLDDYGHIRI  143 (285)
T ss_pred             cCCCcHHHHHHhcCc--CCCCHHHHHHHHHHHHHHHHHHHHCC----------------cEecCCCHHHEEECCCCCEEE
Confidence            9988 4433222111  12245556677789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC-CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP-HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++........ ....|+..|++||+.. .. +..+|+|+   ++|+++. +..||.+..
T Consensus       144 ~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~-g~~pf~~~~  205 (285)
T cd05605         144 SDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIE-GKSPFRQRK  205 (285)
T ss_pred             eeCCCceecCCCCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHH-CCCCCCCCc
Confidence            99999987644332 3456789999999843 22 34566666   5666655 667887654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0986|consensus

Probab=99.96  E-value=2.4e-29  Score=231.56  Aligned_cols=232  Identities=19%  Similarity=0.216  Sum_probs=175.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcc-hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHE-SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~-~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      -|++.+.|+-+..+.||+.+|.|.+.+.+.. ..-.....+|-+||.+++.+.|        |.+-.+|++.+.+|+||.
T Consensus       194 GkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~Fi--------VslaYAfeTkd~LClVLt  265 (591)
T KOG0986|consen  194 GKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFI--------VSLAYAFETKDALCLVLT  265 (591)
T ss_pred             ecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcE--------EEEeeeecCCCceEEEEE
Confidence            3788999999999999999999999877652 2233355689999999999988        999999999999999999


Q ss_pred             ccCCC-hhH-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          90 RQSGP-KDQ-ISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        90 y~~g~-l~~-l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      .|+|| +.+ |.......+++   ..++.++.||+.||++||..+                ||.|||||+|||+|++|+|
T Consensus       266 lMNGGDLkfHiyn~g~~gF~e---~ra~FYAAEi~cGLehlH~~~----------------iVYRDLKPeNILLDd~Ghv  326 (591)
T KOG0986|consen  266 LMNGGDLKFHIYNHGNPGFDE---QRARFYAAEIICGLEHLHRRR----------------IVYRDLKPENILLDDHGHV  326 (591)
T ss_pred             eecCCceeEEeeccCCCCCch---HHHHHHHHHHHhhHHHHHhcc----------------eeeccCChhheeeccCCCe
Confidence            99999 322 22222235544   444555669999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCCCcc-ccCcccccccccc-ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcc-cc--hhcccc
Q psy6542         168 RISDLGLACDFSKKKPHAS-VESDCILHGYIKK-LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKP-EL--IFMDQI  239 (334)
Q Consensus       168 kl~DFGla~~~~~~~~~~~-~~t~~~~~~~v~~-~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~-~~--i~~~~~  239 (334)
                      +|+|+|||..+..+.+... .||..||+|||.. ..|+++.|||   |+.+.|.-++.||.....-... ++  .+....
T Consensus       327 RISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~  406 (591)
T KOG0986|consen  327 RISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDP  406 (591)
T ss_pred             EeeccceEEecCCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcch
Confidence            9999999999999888766 8999999999954 4499999999   4444445556677554322222 11  122222


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      -..+..|++ ..+......+.+||..|++|.
T Consensus       407 ~ey~~kFS~-eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  407 EEYSDKFSE-EAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             hhcccccCH-HHHHHHHHHHccCHHHhccCC
Confidence            223345553 344445556688999999996

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.7e-28  Score=226.95  Aligned_cols=187  Identities=18%  Similarity=0.184  Sum_probs=145.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||++.++.+++.||||++.+... .....+.+.+|..+++.++|+||        +++++++.+++.+|+||||
T Consensus        11 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~~~~~lv~e~   82 (331)
T cd05597          11 RGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWI--------TNLHYAFQDENNLYLVMDY   82 (331)
T ss_pred             ecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCC--------CceEEEEecCCeEEEEEec
Confidence            57778999999999999999999985432 33344567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +..+.......+   ....+..++.||+.||.|||+++                |+||||||+|||++.++.+||
T Consensus        83 ~~g~~L~~~l~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~dlkp~Nill~~~~~~kl  143 (331)
T cd05597          83 YVGGDLLTLLSKFEDRL---PEDMARFYLAEMVLAIDSVHQLG----------------YVHRDIKPDNVLLDKNGHIRL  143 (331)
T ss_pred             CCCCcHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEECCCCHHHEEECCCCCEEE
Confidence            9888 443333222233   33445566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC---CccccCcccccccccc------c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP---HASVESDCILHGYIKK------L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~------~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++..+.....   ....||+.|++||+..      . .+..+|+|+   ++|+++ .+..||.+.+
T Consensus       144 ~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~-~g~~Pf~~~~  212 (331)
T cd05597         144 ADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEML-YGETPFYAES  212 (331)
T ss_pred             EECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHh-hCCCCCCCCC
Confidence            99999986654332   2246899999999853      1 234567777   555655 5677887655

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.96  E-value=2.9e-28  Score=239.34  Aligned_cols=233  Identities=13%  Similarity=0.050  Sum_probs=163.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC--------e
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN--------S   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~--------~   83 (334)
                      +++...||+|.+..+|+.||||++............+.+|+.++..++|+|+        +++++.+...+        .
T Consensus        42 ~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~i--------v~~~~~~~~~~~~~~~~~~~  113 (496)
T PTZ00283         42 SGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSI--------VKCHEDFAKKDPRNPENVLM  113 (496)
T ss_pred             cCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcE--------EEeecceecccccCcccceE
Confidence            4677899999999999999999998766554555678889999999999999        88887765322        3


Q ss_pred             EEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          84 HYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      +++||||+.|| +..................+..++.|++.||.|||+++                |+||||||+|||++
T Consensus       114 i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~----------------IiHrDLKP~NILl~  177 (496)
T PTZ00283        114 IALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKH----------------MIHRDIKSANILLC  177 (496)
T ss_pred             EEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------EecCCCCHHHEEEe
Confidence            78999999988 43333322222223355566777889999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCC----CCCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccc
Q psy6542         163 EHGHVRISDLGLACDFSKK----KPHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPEL  233 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~----~~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~  233 (334)
                      +++.+||+|||+++.+...    .....+||+.|++||+...  .+..+|+|+   ++|+++. +..||.+.+.......
T Consensus       178 ~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLlt-G~~Pf~~~~~~~~~~~  256 (496)
T PTZ00283        178 SNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLT-LKRPFDGENMEEVMHK  256 (496)
T ss_pred             CCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHH
Confidence            9999999999999865432    2344678999999998543  244566677   5566655 6668866543222222


Q ss_pred             hhcccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         234 IFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +........+.... ..-...+...+..+|..|++..
T Consensus       257 ~~~~~~~~~~~~~~-~~l~~li~~~L~~dP~~RPs~~  292 (496)
T PTZ00283        257 TLAGRYDPLPPSIS-PEMQEIVTALLSSDPKRRPSSS  292 (496)
T ss_pred             HhcCCCCCCCCCCC-HHHHHHHHHHcccChhhCcCHH
Confidence            22222222222222 1334455556667888877643

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.96  E-value=5.9e-28  Score=225.39  Aligned_cols=228  Identities=15%  Similarity=0.174  Sum_probs=159.2

Q ss_pred             CCCceEEEecee---CCCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSL---KPLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~---~~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++...||++++   ..+|+.||+|++.+...  .....+.+..|+++++.++ |++|        +++++++..++.+|
T Consensus        10 ~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i--------~~~~~~~~~~~~~~   81 (332)
T cd05614          10 TGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFL--------VTLHYAFQTEAKLH   81 (332)
T ss_pred             ecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCc--------ccEEEEEecCCEEE
Confidence            466677887765   46899999999986432  2223456778999999995 8999        99999999999999


Q ss_pred             EEEEccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          86 IIGVRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        86 ivmEy~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +||||+.|+ + +.+...  ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.
T Consensus        82 lv~e~~~~g~L~~~l~~~--~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivHrDlkp~Nili~~  140 (332)
T cd05614          82 LILDYVSGGEMFTHLYQR--DNF---SEDEVRFYSGEIILALEHLHKLG----------------IVYRDIKLENILLDS  140 (332)
T ss_pred             EEEeCCCCCcHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cEecCCCHHHeEECC
Confidence            999999998 4 333222  123   34455667789999999999999                999999999999999


Q ss_pred             CCCEEEEecccccccCCCC---CCccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         164 HGHVRISDLGLACDFSKKK---PHASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      ++.+||+|||+++......   .....||..|++||+...  . +..+|+|+   ++|++ .++..||...........+
T Consensus       141 ~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el-ltg~~pf~~~~~~~~~~~~  219 (332)
T cd05614         141 EGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFEL-LTGASPFTLEGERNTQSEV  219 (332)
T ss_pred             CCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhh-hcCCCCCCCCCCCCCHHHH
Confidence            9999999999998654332   234578999999998532  2 34567777   55555 5566677654432222111


Q ss_pred             hcc---cccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         235 FMD---QIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       235 ~~~---~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...   .....+. ..+......+..++..||..|++..
T Consensus       220 ~~~~~~~~~~~~~-~~~~~~~~li~~~l~~dp~~R~~~~  257 (332)
T cd05614         220 SRRILKCDPPFPS-FIGPEAQDLLHKLLRKDPKKRLGAG  257 (332)
T ss_pred             HHHHhcCCCCCCC-CCCHHHHHHHHHHcCCCHHHcCCCC
Confidence            111   1111111 1222345667777788999998643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PHA02988 hypothetical protein; Provisional

Probab=99.96  E-value=3.4e-28  Score=222.36  Aligned_cols=235  Identities=8%  Similarity=0.014  Sum_probs=165.7

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec----CCeEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE----PNSHY   85 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~----~~~~~   85 (334)
                      ..++.+.||+|..  +|+.||||.++.... .....+.+.+|+.+|++++||||        +++++++.+    ...++
T Consensus        29 ~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nI--------v~~~g~~~~~~~~~~~~~   98 (283)
T PHA02988         29 KENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNI--------LKIYGFIIDIVDDLPRLS   98 (283)
T ss_pred             eeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCE--------EEEeeeEEecccCCCceE
Confidence            3678899999987  689999999987644 33345678899999999999999        999999876    35789


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +||||++|| +..+.... ..+   .....+.++.|++.||.|||+. +                ++||||||+|||+++
T Consensus        99 lv~Ey~~~g~L~~~l~~~-~~~---~~~~~~~i~~~i~~~l~~lH~~~~----------------~~Hrdlkp~nill~~  158 (283)
T PHA02988         99 LILEYCTRGYLREVLDKE-KDL---SFKTKLDMAIDCCKGLYNLYKYTN----------------KPYKNLTSVSFLVTE  158 (283)
T ss_pred             EEEEeCCCCcHHHHHhhC-CCC---ChhHHHHHHHHHHHHHHHHHhcCC----------------CCCCcCChhhEEECC
Confidence            999999998 54443322 122   3445567788999999999984 6                889999999999999


Q ss_pred             CCCEEEEecccccccCCCCCCccccCcccccccccc----ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         164 HGHVRISDLGLACDFSKKKPHASVESDCILHGYIKK----LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~----~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                      ++.+||+|||+++..... .....++..|++||+..    ..+..+|+|+   ++|++++ +..||.+.+.....     
T Consensus       159 ~~~~kl~dfg~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~-g~~Pf~~~~~~~~~-----  231 (283)
T PHA02988        159 NYKLKIICHGLEKILSSP-PFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFT-GKIPFENLTTKEIY-----  231 (283)
T ss_pred             CCcEEEcccchHhhhccc-cccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHH-CCCCCCCCCHHHHH-----
Confidence            999999999999866543 23455788999999853    2344666677   6677666 56676543211000     


Q ss_pred             ccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         237 DQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                      ..+.   .....  .  .  .....++.+.+  +...|.+.+|..|| +.++++.+..
T Consensus       232 ----------------~~i~---~~~~~--~--~--~~~~~~~~l~~--li~~cl~~dp~~Rps~~ell~~l~~  278 (283)
T PHA02988        232 ----------------DLII---NKNNS--L--K--LPLDCPLEIKC--IVEACTSHDSIKRPNIKEILYNLSL  278 (283)
T ss_pred             ----------------HHHH---hcCCC--C--C--CCCcCcHHHHH--HHHHHhcCCcccCcCHHHHHHHHHH
Confidence                            0000   11100  0  0  01133445555  66777777888888 8888877765

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.96  E-value=2.7e-28  Score=225.41  Aligned_cols=186  Identities=16%  Similarity=0.103  Sum_probs=142.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.++.+++.||||.++...... ....+.+|+++++.++||||        +++++++..++..|+||||+
T Consensus        16 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~   86 (309)
T cd07872          16 EGTYATVFKGRSKLTENLVALKEIRLEHEEG-APCTAIREVSLLKDLKHANI--------VTLHDIVHTDKSLTLVFEYL   86 (309)
T ss_pred             ccCCEEEEEEEecCCCCeEEEEEeeccccCC-cchhHHHHHHHHHhCCCCCc--------ceEEEEEeeCCeEEEEEeCC
Confidence            4677899999999999999999998654422 23346679999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      ++++..........+   ....+..++.|++.||.|||+++                |+||||||+||+++.++.+||+|
T Consensus        87 ~~~l~~~~~~~~~~~---~~~~~~~~~~qi~~aL~~lH~~~----------------ivH~dlkp~Nill~~~~~~kl~D  147 (309)
T cd07872          87 DKDLKQYMDDCGNIM---SMHNVKIFLYQILRGLAYCHRRK----------------VLHRDLKPQNLLINERGELKLAD  147 (309)
T ss_pred             CCCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEECCCCCEEECc
Confidence            988433322221122   34445567779999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC--CCccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         172 LGLACDFSKKK--PHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       172 FGla~~~~~~~--~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ||+++......  .....++..|++||+...   ....+|+|+   ++|+++ ++.+||.+.+
T Consensus       148 fg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~-tg~~pf~~~~  209 (309)
T cd07872         148 FGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMA-SGRPLFPGST  209 (309)
T ss_pred             cccceecCCCccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHH-hCCCCCCCCC
Confidence            99998654332  223456889999997432   234566676   555554 5667876654

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.96  E-value=4.9e-28  Score=228.89  Aligned_cols=185  Identities=17%  Similarity=0.112  Sum_probs=143.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC------CeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP------NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~------~~~~   85 (334)
                      +++.+.||+|.+..+++.||||.+..........+.+.+|+.+++.++||||        +++++++...      ..+|
T Consensus        34 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------i~~~~~~~~~~~~~~~~~~~  105 (364)
T cd07875          34 SGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI--------IGLLNVFTPQKSLEEFQDVY  105 (364)
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCc--------cccceeecccccccccCeEE
Confidence            5777899999999999999999998655444445667789999999999999        9999887643      3579


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||||+++++......   .+   ....+..++.|++.||.|||+++                |+||||||+||+++.++
T Consensus       106 lv~e~~~~~l~~~~~~---~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivH~Dlkp~NIll~~~~  163 (364)
T cd07875         106 IVMELMDANLCQVIQM---EL---DHERMSYLLYQMLCGIKHLHSAG----------------IIHRDLKPSNIVVKSDC  163 (364)
T ss_pred             EEEeCCCCCHHHHHHh---cC---CHHHHHHHHHHHHHHHHHHhhCC----------------eecCCCCHHHEEECCCC
Confidence            9999999985333222   12   33445667789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCC-CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKP-HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      .+||+|||+++....... ....+|..|++||+.. .. ...+|+|+   ++|++ ..+..||.+.+.
T Consensus       164 ~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el-l~g~~pf~~~~~  230 (364)
T cd07875         164 TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM-IKGGVLFPGTDH  230 (364)
T ss_pred             cEEEEeCCCccccCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHH-HhCCCCCCCCCH
Confidence            999999999987655432 3456789999999843 23 44567777   55555 556678876653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0608|consensus

Probab=99.96  E-value=2.2e-28  Score=232.71  Aligned_cols=229  Identities=17%  Similarity=0.198  Sum_probs=167.7

Q ss_pred             CceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          14 SKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        14 ~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      -++.|.++....|...||+|.|++... ...-..+...|-+||....++-|        |++|..|++.+.+|+||||+.
T Consensus       641 AFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WV--------VrLyySFQDkdnLYFVMdYIP  712 (1034)
T KOG0608|consen  641 AFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWV--------VRLYYSFQDKDNLYFVMDYIP  712 (1034)
T ss_pred             ccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcce--------EEEEEEeccCCceEEEEeccC
Confidence            467999999999999999999997654 22233467789999999999999        999999999999999999999


Q ss_pred             CChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEec
Q psy6542          93 GPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDL  172 (334)
Q Consensus        93 g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DF  172 (334)
                      ||.-.-+.-+.+-|.+..+.+++.   ++..|+++.|..|                +|||||||+|||||.+|++||+||
T Consensus       713 GGDmMSLLIrmgIFeE~LARFYIA---EltcAiesVHkmG----------------FIHRDiKPDNILIDrdGHIKLTDF  773 (1034)
T KOG0608|consen  713 GGDMMSLLIRMGIFEEDLARFYIA---ELTCAIESVHKMG----------------FIHRDIKPDNILIDRDGHIKLTDF  773 (1034)
T ss_pred             CccHHHHHHHhccCHHHHHHHHHH---HHHHHHHHHHhcc----------------ceecccCccceEEccCCceeeeec
Confidence            993222233344565555555554   9999999999999                999999999999999999999999


Q ss_pred             ccccccC--CC------------------------------------------CCCccccCcccccccc-ccccCCccee
Q psy6542         173 GLACDFS--KK------------------------------------------KPHASVESDCILHGYI-KKLGGPFVSA  207 (334)
Q Consensus       173 Gla~~~~--~~------------------------------------------~~~~~~~t~~~~~~~v-~~~~~~~~~~  207 (334)
                      |||.-+.  .+                                          ..+...||+.|++||| .+.||+...|
T Consensus       774 GLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cd  853 (1034)
T KOG0608|consen  774 GLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCD  853 (1034)
T ss_pred             cccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccch
Confidence            9997440  00                                          0134578999999998 5788999999


Q ss_pred             eh----hHHHHHcCCCCCCCCCCCCCc-ccchhcccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         208 WQ----TRYAKLFPNRLELHPESGQSK-PELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       208 w~----~~~~~l~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ||    ++|+|++ +++||........ ..++-+.....++..-........++..+-.++..|++..
T Consensus       854 wws~gvil~em~~-g~~pf~~~tp~~tq~kv~nw~~~l~~~~~~~ls~e~~~li~kLc~sad~RLGkn  920 (1034)
T KOG0608|consen  854 WWSVGVILYEMLV-GQPPFLADTPGETQYKVINWRNFLHIPYQGNLSKEALDLIQKLCCSADSRLGKN  920 (1034)
T ss_pred             hhHhhHHHHHHhh-CCCCccCCCCCcceeeeeehhhccccccccccCHHHHHHHHHHhcChhhhhccc
Confidence            99    6777766 5668877664433 3344444444333222211222223344455677777654

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.96  E-value=2.7e-27  Score=221.32  Aligned_cols=184  Identities=14%  Similarity=0.175  Sum_probs=144.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++.++.+|..||+|.+..... ......+.+|+++++.++|+||        +++++++.+++.+|+||||+
T Consensus        15 ~g~~g~V~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~   85 (333)
T cd06650          15 AGNGGVVFKVSHKPSGLIMARKLIHLEIK-PAIRNQIIRELQVLHECNSPYI--------VGFYGAFYSDGEISICMEHM   85 (333)
T ss_pred             CCCCEEEEEEEECCCCcEEEEEEeecccC-HHHHHHHHHHHHHHHHCCCCcc--------cceeEEEEECCEEEEEEecC
Confidence            46778999999999999999999886533 2344568889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .|+ +..+.... ...   ....+..++.|++.||.|||+. +                ++||||||+|||+++++.+||
T Consensus        86 ~~~~L~~~l~~~-~~~---~~~~~~~~~~~l~~~l~~lH~~~~----------------ivH~dlkp~Nili~~~~~~kL  145 (333)
T cd06650          86 DGGSLDQVLKKA-GRI---PEQILGKVSIAVIKGLTYLREKHK----------------IMHRDVKPSNILVNSRGEIKL  145 (333)
T ss_pred             CCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHhcCC----------------EEecCCChhhEEEcCCCCEEE
Confidence            987 54433321 122   4455567778999999999974 6                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||++............|+..|++||+...  .+..+|+|+   ++|+++ .+..||...
T Consensus       146 ~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~-~g~~p~~~~  205 (333)
T cd06650         146 CDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMA-IGRYPIPPP  205 (333)
T ss_pred             eeCCcchhhhhhccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHH-HCCCCCCCc
Confidence            9999998765554555678899999998532  244566666   555655 456676544

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=2.7e-28  Score=222.51  Aligned_cols=188  Identities=16%  Similarity=0.141  Sum_probs=140.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc---CCCCcccccccceeeEEEEeec-----CCe
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL---RNEPFKKCVLLFKMNLYKVTSE-----PNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l---~h~~i~~~~~~~~v~~~~~~~~-----~~~   83 (334)
                      +++.+.||+|.++.+|+.||||.++.............+|+++++.+   +||||        +++++++..     ...
T Consensus        10 ~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni--------~~~~~~~~~~~~~~~~~   81 (288)
T cd07863          10 VGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNI--------VRLMDVCATSRTDRETK   81 (288)
T ss_pred             ecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCe--------eeeeeeeccccCCCCce
Confidence            57788999999999999999999986544333333455677777665   79999        999998764     345


Q ss_pred             EEEEEEccCCChhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          84 HYIIGVRQSGPKDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        84 ~~ivmEy~~g~l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      +++||||+.+++..+... ....+   ....+..++.|++.||.|||+++                ++||||||+||+++
T Consensus        82 ~~lv~e~~~~~l~~~~~~~~~~~~---~~~~~~~~~~qi~~al~~lH~~~----------------ivH~dikp~Nili~  142 (288)
T cd07863          82 VTLVFEHVDQDLRTYLDKVPPPGL---PAETIKDLMRQFLRGLDFLHANC----------------IVHRDLKPENILVT  142 (288)
T ss_pred             EEEEEcccccCHHHHHHhcCCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEEC
Confidence            899999999884333222 21122   45556677889999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCCCC-CccccCcccccccccc-c-cCCcceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         163 EHGHVRISDLGLACDFSKKKP-HASVESDCILHGYIKK-L-GGPFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~-~~~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      +++.+||+|||+++....... ....++..|++||+.. . ....+|+|+  ++.+.+.++.++|.+..
T Consensus       143 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~  211 (288)
T cd07863         143 SGGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS  211 (288)
T ss_pred             CCCCEEECccCccccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCC
Confidence            999999999999987654432 3346788999999853 2 245667777  44444457777775543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.96  E-value=8.1e-28  Score=224.66  Aligned_cols=188  Identities=17%  Similarity=0.161  Sum_probs=145.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||++.++.+++.||||++.+... .......+.+|..++..++|++|        +++++++.+++.+|+||||
T Consensus        11 ~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i--------~~l~~~~~~~~~~~lv~Ey   82 (331)
T cd05624          11 RGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWI--------TTLHYAFQDENYLYLVMDY   82 (331)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCE--------eeEEEEEEcCCEEEEEEeC
Confidence            57788999999999999999999986432 23334457789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|| +..+.......+   .......++.|++.||.|||+++                |+||||||+|||++.++.+||
T Consensus        83 ~~gg~L~~~l~~~~~~l---~~~~~~~~~~qi~~~L~~lH~~~----------------iiHrDlkp~Nill~~~~~~kl  143 (331)
T cd05624          83 YVGGDLLTLLSKFEDRL---PEDMARFYIAEMVLAIHSIHQLH----------------YVHRDIKPDNVLLDMNGHIRL  143 (331)
T ss_pred             CCCCcHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeeccCchHHEEEcCCCCEEE
Confidence            9988 544433322233   33344556779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC---CccccCccccccccccc-------cCCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP---HASVESDCILHGYIKKL-------GGPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       170 ~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~~-------~~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      +|||++........   ....|++.|++||+...       ....+|+|+   ++|++ .++..||.+.+.
T Consensus       144 ~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~el-l~g~~Pf~~~~~  213 (331)
T cd05624         144 ADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEM-LYGETPFYAESL  213 (331)
T ss_pred             EeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhh-hhCCCCccCCCH
Confidence            99999987654432   23468999999998532       234567777   55555 556778876653

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.96  E-value=9.7e-28  Score=232.57  Aligned_cols=185  Identities=14%  Similarity=0.070  Sum_probs=137.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--------CCe
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--------PNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--------~~~   83 (334)
                      +|+.+.||+|.+..+++.||||.+.....      ...+|+.+++.++||||        |++++++..        ...
T Consensus        76 ~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~------~~~~Ei~il~~l~h~ni--------v~l~~~~~~~~~~~~~~~~~  141 (440)
T PTZ00036         76 NGSFGVVYEAICIDTSEKVAIKKVLQDPQ------YKNRELLIMKNLNHINI--------IFLKDYYYTECFKKNEKNIF  141 (440)
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEecCcc------hHHHHHHHHHhcCCCCC--------cceeeeEeecccccCCCceE
Confidence            57788999999999999999998864322      23469999999999999        998887642        235


Q ss_pred             EEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          84 HYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        84 ~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +++||||+++++..+...............+..++.||+.||.|||+++                |+||||||+|||++.
T Consensus       142 l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~----------------IiHrDLKp~NILl~~  205 (440)
T PTZ00036        142 LNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKF----------------ICHRDLKPQNLLIDP  205 (440)
T ss_pred             EEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCC----------------EecCCcCHHHEEEcC
Confidence            7899999999843322221111122345556677789999999999999                999999999999997


Q ss_pred             CC-CEEEEecccccccCCCC-CCccccCcccccccccc--ccC-Ccceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         164 HG-HVRISDLGLACDFSKKK-PHASVESDCILHGYIKK--LGG-PFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       164 ~~-~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~--~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      ++ .+||+|||+|+.+.... .....||+.|++||+..  ..+ ..+|+|+   ++|++ .++.+||.+.+.
T Consensus       206 ~~~~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~el-ltG~~pf~~~~~  276 (440)
T PTZ00036        206 NTHTLKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEM-ILGYPIFSGQSS  276 (440)
T ss_pred             CCCceeeeccccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHH-HhCCCCCCCCCh
Confidence            65 69999999998765433 33456789999999742  234 4566666   55555 556778877653

>KOG0695|consensus

Probab=99.95  E-value=1.3e-28  Score=219.52  Aligned_cols=230  Identities=15%  Similarity=0.191  Sum_probs=180.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      |+|--+|.+++.+.|.+.+|+|++++.-. ++..-.+.+.|-.++.+. +||.+        |-++..|++..++++|.|
T Consensus       260 rgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pfl--------vglhscfqtesrlffvie  331 (593)
T KOG0695|consen  260 RGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFL--------VGLHSCFQTESRLFFVIE  331 (593)
T ss_pred             CcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeE--------EehhhhhcccceEEEEEE
Confidence            56667999999999999999999997644 444556788898888775 58888        999999999999999999


Q ss_pred             ccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          90 RQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        90 y~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |++||.-.++..+-+.+++..+.++-   .+|+.||+|||++|                ||.||||.+|+|++..|++||
T Consensus       332 yv~ggdlmfhmqrqrklpeeharfys---~ei~lal~flh~rg----------------iiyrdlkldnvlldaeghikl  392 (593)
T KOG0695|consen  332 YVNGGDLMFHMQRQRKLPEEHARFYS---AEICLALNFLHERG----------------IIYRDLKLDNVLLDAEGHIKL  392 (593)
T ss_pred             EecCcceeeehhhhhcCcHHHhhhhh---HHHHHHHHHHhhcC----------------eeeeeccccceEEccCCceee
Confidence            99999444444444556555555544   49999999999999                999999999999999999999


Q ss_pred             EecccccccCCC--CCCccccCcccccccccc-ccCCcceeeh----hHHHHHcCCCCCCCCCC--------CCCcccch
Q psy6542         170 SDLGLACDFSKK--KPHASVESDCILHGYIKK-LGGPFVSAWQ----TRYAKLFPNRLELHPES--------GQSKPELI  234 (334)
Q Consensus       170 ~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~-~~~~~~~~w~----~~~~~l~~~~~~~~~~~--------~~~~~~~i  234 (334)
                      +|+|.|+.-...  .+.++||||.|.+||++. ..|.++.|||    +++|||++.. ||..-.        .++.+++|
T Consensus       393 tdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrs-pfdivgm~n~d~ntedylfqvi  471 (593)
T KOG0695|consen  393 TDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRS-PFDIVGMDNPDMNTEDYLFQVI  471 (593)
T ss_pred             cccchhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCC-CcceecCCCcccchhHHHHHHH
Confidence            999999854333  356789999999999864 5599999999    6788877655 664332        22355666


Q ss_pred             hcccccccccccccHhHHHHHHHhhccCchhhcCCCc
Q psy6542         235 FMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPV  271 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~  271 (334)
                      +-.++. +|..++ +++...+...+.+||..|++|..
T Consensus       472 lekqir-iprsls-vkas~vlkgflnkdp~erlgc~~  506 (593)
T KOG0695|consen  472 LEKQIR-IPRSLS-VKASHVLKGFLNKDPKERLGCRP  506 (593)
T ss_pred             hhhccc-ccceee-hhhHHHHHHhhcCCcHHhcCCCc
Confidence            555554 554444 35667788888999999999983

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.95  E-value=5.8e-28  Score=222.24  Aligned_cols=186  Identities=18%  Similarity=0.130  Sum_probs=143.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||+|.++.+++.||||.++...... ....+.+|+.+++.++||||        +++++++.+++.+|+||||+
T Consensus        16 ~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~E~~~l~~l~h~nI--------~~~~~~~~~~~~~~lv~e~~   86 (301)
T cd07873          16 EGTYATVYKGRSKLTDNLVALKEIRLEHEEG-APCTAIREVSLLKDLKHANI--------VTLHDIIHTEKSLTLVFEYL   86 (301)
T ss_pred             cCcCEEEEEEEEcCCCcEEEEEEEecccccC-chhHHHHHHHHHHhcCCCCc--------ceEEEEEecCCeEEEEEecc
Confidence            4677899999999999999999998654322 23356679999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      ++++..........+   ....+..++.|++.||.|||+.+                ++||||||+||++++++.++|+|
T Consensus        87 ~~~l~~~l~~~~~~~---~~~~~~~~~~qi~~aL~~lH~~~----------------i~H~dlkp~Nil~~~~~~~kl~d  147 (301)
T cd07873          87 DKDLKQYLDDCGNSI---NMHNVKLFLFQLLRGLNYCHRRK----------------VLHRDLKPQNLLINERGELKLAD  147 (301)
T ss_pred             ccCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeCCCCCHHHEEECCCCcEEECc
Confidence            988543333222222   34556677789999999999999                99999999999999999999999


Q ss_pred             cccccccCCCCC--CccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         172 LGLACDFSKKKP--HASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       172 FGla~~~~~~~~--~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ||++........  ....++..|++||+...  . ...+|+|+   ++|+++ ++.+||.+.+
T Consensus       148 fg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~-tg~~~f~~~~  209 (301)
T cd07873         148 FGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMS-TGRPLFPGST  209 (301)
T ss_pred             CcchhccCCCCCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHH-hCCCCCCCCC
Confidence            999986543322  23456788999997432  2 33566666   556654 5677876554

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.95  E-value=6.9e-28  Score=219.35  Aligned_cols=189  Identities=19%  Similarity=0.154  Sum_probs=145.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      ..++...||+|.++.+|+.||||.++....+....+.+.+|+.+++.++|||+        +++++++.+++.+|+||||
T Consensus         9 ~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           9 GEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNI--------VCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             cccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCE--------eeeEEEEeeCCeEEEEEec
Confidence            34677899999999999999999998655444344567789999999999999        9999999999999999999


Q ss_pred             cCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.+++ +.+.....  ........++.++.|++.||.|||+.+                ++||||||+||++++++.++|
T Consensus        81 ~~~~l~~~~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~----------------i~H~dl~p~nil~~~~~~~~l  142 (285)
T cd07861          81 LSMDLKKYLDSLPK--GQYMDAELVKSYLYQILQGILFCHSRR----------------VLHRDLKPQNLLIDNKGVIKL  142 (285)
T ss_pred             CCCCHHHHHhcCCC--CCcCCHHHHHHHHHHHHHHHHHHHhCC----------------eeecCCCHHHEEEcCCCcEEE
Confidence            99874 33322111  112245556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC--CccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP--HASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++........  ....+++.|++||+..  . ....+|+|+   ++|+++ ++.+||.+..
T Consensus       143 ~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~-tg~~~~~~~~  206 (285)
T cd07861         143 ADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMA-TKKPLFHGDS  206 (285)
T ss_pred             CcccceeecCCCcccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHH-HCCCCCCCCC
Confidence            99999986543322  2234578899999742  2 244677777   555555 4567776544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG1187|consensus

Probab=99.95  E-value=1.1e-27  Score=225.30  Aligned_cols=181  Identities=15%  Similarity=0.088  Sum_probs=143.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC-eEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN-SHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~-~~~ivmEy   90 (334)
                      +++.+.||++..... +.||||.+.......  .+.|.+|++++.+++|||+        |+++++|.+.+ ..++|+||
T Consensus        85 ~Ggfg~VYkG~l~~~-~~vAVK~~~~~~~~~--~~eF~~Ei~~ls~l~H~Nl--------v~LlGyC~e~~~~~~LVYEy  153 (361)
T KOG1187|consen   85 EGGFGTVYKGVLSDG-TVVAVKRLSSNSGQG--EREFLNEVEILSRLRHPNL--------VKLLGYCLEGGEHRLLVYEY  153 (361)
T ss_pred             cCCCeEEEEEEECCC-CEEEEEEecCCCCcc--hhHHHHHHHHHhcCCCcCc--------ccEEEEEecCCceEEEEEEc
Confidence            467889999998874 899999877655432  3459999999999999999        99999999988 49999999


Q ss_pred             cCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      +.+| + +++.... ..  ......-+.|+.+++.||.|||+..             .||||||||||+|||+|.+...|
T Consensus       154 m~nGsL~d~L~~~~-~~--~L~W~~R~kIa~g~A~gL~yLH~~~-------------~~~iiHrDiKssNILLD~~~~aK  217 (361)
T KOG1187|consen  154 MPNGSLEDHLHGKK-GE--PLDWETRLKIALGAARGLAYLHEGC-------------PPPIIHRDIKSSNILLDEDFNAK  217 (361)
T ss_pred             cCCCCHHHHhCCCC-CC--CCCHHHHHHHHHHHHHHHHHHccCC-------------CCCEecCCCCHHHeeECCCCCEE
Confidence            9988 5 4443322 21  3366677889999999999999975             46799999999999999999999


Q ss_pred             EEecccccccCC-CCCCc-c-ccCccccccccccc--cCCcceeeh---hHHHHHcCCC
Q psy6542         169 ISDLGLACDFSK-KKPHA-S-VESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNR  219 (334)
Q Consensus       169 l~DFGla~~~~~-~~~~~-~-~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~  219 (334)
                      |+|||+|+.... ..... . .||..|++||....  -+.++|+++   ++.|++.+..
T Consensus       218 lsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~  276 (361)
T KOG1187|consen  218 LSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRK  276 (361)
T ss_pred             ccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCc
Confidence            999999976654 33222 2 78999999987543  356788888   5557766553

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.95  E-value=2.7e-27  Score=218.04  Aligned_cols=188  Identities=13%  Similarity=0.085  Sum_probs=138.1

Q ss_pred             CCCceEEEeceeC----------------CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEE
Q psy6542          12 RVSKWRVKPPSLK----------------PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLY   75 (334)
Q Consensus        12 ~~~~~~V~~a~~~----------------~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~   75 (334)
                      +++...||+|.+.                .++..||||.++.... ....+.+.+|++++++++||||        ++++
T Consensus        15 ~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~ni--------v~~~   85 (304)
T cd05096          15 EGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDAN-KNARNDFLKEVKILSRLKDPNI--------IRLL   85 (304)
T ss_pred             ccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCC-HHHHHHHHHHHHHHhhcCCCCe--------eEEE
Confidence            5788899998753                3445799999986543 2345578889999999999999        9999


Q ss_pred             EEeecCCeEEEEEEccCCC-hhHHhhh-hhh--------------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhh
Q psy6542          76 KVTSEPNSHYIIGVRQSGP-KDQISRS-KIN--------------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIA  139 (334)
Q Consensus        76 ~~~~~~~~~~ivmEy~~g~-l~~l~~~-~~~--------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~  139 (334)
                      +++.+.+..|+||||+.++ +..+... ...              ..........+.++.||+.||.|||+.+       
T Consensus        86 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~-------  158 (304)
T cd05096          86 GVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN-------  158 (304)
T ss_pred             EEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCC-------
Confidence            9999999999999999887 4333222 110              0111234556778889999999999999       


Q ss_pred             hhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-c-cCCcceeeh---h
Q psy6542         140 IFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-L-GGPFVSAWQ---T  210 (334)
Q Consensus       140 ~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~  210 (334)
                               |+||||||+|||+++++.+||+|||+++.+.....    ....++..|++||+.. . .++.+|+|+   +
T Consensus       159 ---------ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  229 (304)
T cd05096         159 ---------FVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVT  229 (304)
T ss_pred             ---------ccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHH
Confidence                     99999999999999999999999999986644322    1223467789999743 2 244566666   6


Q ss_pred             HHHHHcC-CCCCCCC
Q psy6542         211 RYAKLFP-NRLELHP  224 (334)
Q Consensus       211 ~~~~l~~-~~~~~~~  224 (334)
                      +|+++.. +..||..
T Consensus       230 l~el~~~~~~~p~~~  244 (304)
T cd05096         230 LWEILMLCKEQPYGE  244 (304)
T ss_pred             HHHHHHccCCCCCCc
Confidence            6776643 4455543

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.95  E-value=3.6e-28  Score=221.27  Aligned_cols=187  Identities=17%  Similarity=0.120  Sum_probs=145.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||+|.++...........+.+|+++++.++|||+        +++++++.+.+.+|+||||+
T Consensus        10 ~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   81 (284)
T cd07839          10 EGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI--------VRLYDVLHSDKKLTLVFEYC   81 (284)
T ss_pred             ccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCe--------eeHHHHhccCCceEEEEecC
Confidence            4677899999999999999999998655443344567789999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      ++++..........   .....++.++.||+.||.|||+++                ++||||||+||+++.++.++|+|
T Consensus        82 ~~~l~~~~~~~~~~---~~~~~~~~~~~qi~~al~~LH~~~----------------i~H~dl~~~nil~~~~~~~~l~d  142 (284)
T cd07839          82 DQDLKKYFDSCNGD---IDPEIVKSFMFQLLKGLAFCHSHN----------------VLHRDLKPQNLLINKNGELKLAD  142 (284)
T ss_pred             CCCHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHHHCC----------------EecCCCCHHHEEEcCCCcEEECc
Confidence            98843332221122   355566777889999999999999                99999999999999999999999


Q ss_pred             cccccccCCCCC--CccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         172 LGLACDFSKKKP--HASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       172 FGla~~~~~~~~--~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ||+++.......  ....++..|++||+...   ....+|+|+   ++|+++.++.+++.+.
T Consensus       143 fg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~  204 (284)
T cd07839         143 FGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN  204 (284)
T ss_pred             cchhhccCCCCCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence            999986654322  23346788999997422   245667777   6777777666555443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.95  E-value=1.5e-27  Score=222.33  Aligned_cols=186  Identities=12%  Similarity=0.084  Sum_probs=142.2

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      ++.+.||++.++.+|+.||||.+............+.+|+++++.++||||        +++++++.+++.+|+||||++
T Consensus        11 ~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpni--------v~~~~~~~~~~~~~lv~e~~~   82 (327)
T cd08227          11 EDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNI--------VPYRATFIADNELWVVTSFMA   82 (327)
T ss_pred             cceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCe--------eeEEEEEEECCEEEEEEeccC
Confidence            367899999999999999999998766555566678889999999999999        999999999999999999999


Q ss_pred             CC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          93 GP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        93 g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      ++ + +.+.......+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.++++
T Consensus        83 ~~~l~~~~~~~~~~~l---~~~~~~~i~~qi~~~L~~LH~~~----------------iiH~dlkp~Nil~~~~~~~~l~  143 (327)
T cd08227          83 YGSAKDLICTHFMDGM---SELAIAYILQGVLKALDYIHHMG----------------YVHRSVKASHILISVDGKVYLS  143 (327)
T ss_pred             CCcHHHHHHhhccCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EecCCCChhhEEEecCCcEEEc
Confidence            88 4 33332222223   44555677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC---------CCccccCccccccccccc---cC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK---------PHASVESDCILHGYIKKL---GG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~---------~~~~~~t~~~~~~~v~~~---~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||.+.......         .....++..|++||+...   .+ ..+|+|+   ++|++ ..+..||...+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el-~~g~~pf~~~~  214 (327)
T cd08227         144 GLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACEL-ANGHVPFKDMP  214 (327)
T ss_pred             ccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHH-HHCCCCCCCcc
Confidence            998765432211         112345667899998532   23 4566666   55555 45666776543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.95  E-value=4e-28  Score=227.51  Aligned_cols=184  Identities=18%  Similarity=0.170  Sum_probs=142.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC------CeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP------NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~------~~~~   85 (334)
                      +++...||+|.+..+++.||||.+..........+.+.+|+++++.++||||        +++++++...      ..+|
T Consensus        25 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~~~   96 (343)
T cd07878          25 SGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENV--------IGLLDVFTPATSIENFNEVY   96 (343)
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCch--------hhhhhhhcccccccccCcEE
Confidence            5678899999999999999999998654433344567789999999999999        9998887643      4579


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      ++||++.+.+..+....  .+   ....+..++.|++.||.|||+++                |+||||||+||++++++
T Consensus        97 ~~~~~~~~~l~~~~~~~--~l---~~~~~~~i~~qi~~aL~~LH~~~----------------ivHrdikp~Nil~~~~~  155 (343)
T cd07878          97 LVTNLMGADLNNIVKCQ--KL---SDEHVQFLIYQLLRGLKYIHSAG----------------IIHRDLKPSNVAVNEDC  155 (343)
T ss_pred             EEeecCCCCHHHHHhcC--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecccCChhhEEECCCC
Confidence            99999977765543321  23   44556677789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++..... .....||..|++||+...   ....+|+|+   ++|++ ..+..||.+..
T Consensus       156 ~~kl~Dfg~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el-~~g~~pf~~~~  220 (343)
T cd07878         156 ELRILDFGLARQADDE-MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAEL-LKGKALFPGND  220 (343)
T ss_pred             CEEEcCCccceecCCC-cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHH-HHCCCCCCCCC
Confidence            9999999999876543 334568899999998532   234566676   45555 45666775543

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.95  E-value=4.7e-27  Score=213.63  Aligned_cols=186  Identities=14%  Similarity=0.158  Sum_probs=139.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHH-HHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEI-FNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~i-l~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++...||++.++.+|+.||||.++......... .+..|..+ ++.++|||+        +++++++..++.+|++|||
T Consensus        11 ~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~i--------v~~~~~~~~~~~~~lv~e~   81 (283)
T cd06617          11 RGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQK-RLLMDLDISMRSVDCPYT--------VTFYGALFREGDVWICMEV   81 (283)
T ss_pred             ccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHH-HHHHHHHHHHHHcCCCCe--------eeeeEEEecCCcEEEEhhh
Confidence            4677799999999999999999998765433222 34445554 677899999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|++..+...............++.++.|++.||.|||++ +                ++||||||+||+++.++.+||
T Consensus        82 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~----------------i~h~dlkp~nil~~~~~~~kl  145 (283)
T cd06617          82 MDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLS----------------VIHRDVKPSNVLINRNGQVKL  145 (283)
T ss_pred             hcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCC----------------eecCCCCHHHEEECCCCCEEE
Confidence            99885444333222222335666778888999999999997 7                999999999999999999999


Q ss_pred             EecccccccCCCCCC-ccccCcccccccccc-----cc-CCcceeeh---hHHHHHcCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPH-ASVESDCILHGYIKK-----LG-GPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       170 ~DFGla~~~~~~~~~-~~~~t~~~~~~~v~~-----~~-~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      +|||+++........ ...++..|++||+..     .. +..+|.|+   ++|+++. +..||.
T Consensus       146 ~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~  208 (283)
T cd06617         146 CDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELAT-GRFPYD  208 (283)
T ss_pred             eecccccccccccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHh-CCCCCC
Confidence            999999876544322 245778899999742     22 34566666   5556554 566663

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.95  E-value=2.6e-27  Score=225.11  Aligned_cols=242  Identities=11%  Similarity=0.010  Sum_probs=166.4

Q ss_pred             CCCCceEEEecee-----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeE
Q psy6542          11 SRVSKWRVKPPSL-----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~-----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      -+++...||+|..     ..++..||||+++...... ..+.+.+|+++++.+ +||||        +++++++.+++..
T Consensus        44 G~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~-~~~~~~~Ei~il~~l~~HpnI--------v~l~~~~~~~~~~  114 (375)
T cd05104          44 GAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLT-EREALMSELKVLSYLGNHINI--------VNLLGACTVGGPT  114 (375)
T ss_pred             cCCccceEEEEEEeccccCccceeEEEEeccCCcCcH-HHHHHHHHHHHHHHhcCCcce--------eeeeeeeccCCcc
Confidence            3677889998863     5678899999997554322 345678899999999 89999        9999999999999


Q ss_pred             EEEEEccCCC-h-hHHhhhhhhh---------------------------------------------------------
Q psy6542          85 YIIGVRQSGP-K-DQISRSKINR---------------------------------------------------------  105 (334)
Q Consensus        85 ~ivmEy~~g~-l-~~l~~~~~~~---------------------------------------------------------  105 (334)
                      |+|||||+|| + +++.......                                                         
T Consensus       115 ~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (375)
T cd05104         115 LVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSY  194 (375)
T ss_pred             eeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccccccee
Confidence            9999999998 3 3443211000                                                         


Q ss_pred             -------------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEec
Q psy6542         106 -------------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDL  172 (334)
Q Consensus       106 -------------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DF  172 (334)
                                   ........++.++.||+.||.|||+++                |+||||||+|||+++++.+||+||
T Consensus       195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~Dlkp~Nill~~~~~~kl~Df  258 (375)
T cd05104         195 IDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKN----------------CIHRDLAARNILLTHGRITKICDF  258 (375)
T ss_pred             cccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCchhhEEEECCCcEEEecC
Confidence                         001234556778889999999999999                999999999999999999999999


Q ss_pred             ccccccCCCCCCc----cccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         173 GLACDFSKKKPHA----SVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       173 Gla~~~~~~~~~~----~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      |+++.........    ..++..|++||+.. .. +..+|+|+   ++|+++..+..||.......              
T Consensus       259 G~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~--------------  324 (375)
T cd05104         259 GLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDS--------------  324 (375)
T ss_pred             ccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchH--------------
Confidence            9998665443221    22345689999843 23 44566666   77787776777764432110              


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                ++...+...-  +..    .....+.++.+  +..+|...+|..|| +.++++.+.+
T Consensus       325 ----------~~~~~~~~~~--~~~----~~~~~~~~l~~--li~~cl~~dP~~RPs~~eil~~l~~  373 (375)
T cd05104         325 ----------KFYKMIKEGY--RML----SPECAPSEMYD--IMKSCWDADPLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             ----------HHHHHHHhCc--cCC----CCCCCCHHHHH--HHHHHccCChhHCcCHHHHHHHHHh
Confidence                      0111111000  000    00112233344  88888889999999 8888888765

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.95  E-value=2.6e-27  Score=225.00  Aligned_cols=188  Identities=14%  Similarity=0.067  Sum_probs=139.6

Q ss_pred             CCCceEEEeceeCCC-----CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPL-----GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~-----~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++...||+|.+..+     +..||||.++...... ....+.+|+++++.+ +|+||        |++++++.+++.+|
T Consensus        48 ~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~E~~il~~l~~h~nI--------v~~~~~~~~~~~~~  118 (374)
T cd05106          48 AGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTD-EREALMSELKILSHLGQHKNI--------VNLLGACTHGGPVL  118 (374)
T ss_pred             CCCcccEEEEEEecCCcccccceeEEEeccCCCCHH-HHHHHHHHHHHHHhhccCCce--------eeEeeEecCCCCeE
Confidence            567789999886544     4579999998655432 345677899999999 89999        99999999999999


Q ss_pred             EEEEccCCC-h-hHHhhhhhh-----------------------------------------------------------
Q psy6542          86 IIGVRQSGP-K-DQISRSKIN-----------------------------------------------------------  104 (334)
Q Consensus        86 ivmEy~~g~-l-~~l~~~~~~-----------------------------------------------------------  104 (334)
                      +|||||.+| + +++......                                                           
T Consensus       119 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (374)
T cd05106         119 VITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSK  198 (374)
T ss_pred             EeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccccccc
Confidence            999999988 3 333221100                                                           


Q ss_pred             ------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccccc
Q psy6542         105 ------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDF  178 (334)
Q Consensus       105 ------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~  178 (334)
                            .........++.++.|++.||.|||+++                |+||||||+|||+++++.+||+|||+++..
T Consensus       199 ~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g----------------iiHrDLkp~Nil~~~~~~~kL~DfGla~~~  262 (374)
T cd05106         199 DEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKN----------------CIHRDVAARNVLLTDGRVAKICDFGLARDI  262 (374)
T ss_pred             chhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCC----------------EEeccCchheEEEeCCCeEEEeeceeeeec
Confidence                  0001234556788899999999999999                999999999999999999999999999866


Q ss_pred             CCCCCCc----cccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         179 SKKKPHA----SVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       179 ~~~~~~~----~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .......    ..++..|++||+.. .. +..+|+|+   ++|+++..+..||..
T Consensus       263 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~  317 (374)
T cd05106         263 MNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPG  317 (374)
T ss_pred             cCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc
Confidence            5443222    22345689999742 33 44556666   667777667777654

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.95  E-value=5.5e-27  Score=214.25  Aligned_cols=188  Identities=17%  Similarity=0.156  Sum_probs=143.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++...||++.+..+++.||+|.+..... .......+.+|+++++.++|+|+        +.+++.+..++.+|++|||
T Consensus        10 ~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i--------~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632          10 KGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFV--------VNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCc--------eeEEEEEecCCEEEEEEEe
Confidence            36678999999999999999999986543 22233456779999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +........  ........+..++.|++.||.|||+.+                |+||||||+||++++++.++|
T Consensus        82 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~ql~~~l~~lH~~~----------------iiH~dikp~Nili~~~~~~kl  143 (285)
T cd05632          82 MNGGDLKFHIYNMG--NPGFEEERALFYAAEILCGLEDLHREN----------------TVYRDLKPENILLDDYGHIRI  143 (285)
T ss_pred             ccCccHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCC----------------eeecCCCHHHEEECCCCCEEE
Confidence            9988 433322211  112355566677789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK-PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++....... .....|+..|++||+.. .. ...+|.|+   ++|+++ .+..||.+..
T Consensus       144 ~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~-~g~~P~~~~~  205 (285)
T cd05632         144 SDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMI-EGQSPFRGRK  205 (285)
T ss_pred             ecCCcceecCCCCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHH-hCCCCCCCCC
Confidence            9999997654332 23456789999999842 23 34556666   555554 5677876544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.95  E-value=2.1e-27  Score=216.08  Aligned_cols=240  Identities=14%  Similarity=0.049  Sum_probs=168.0

Q ss_pred             CCCceEEEeceeCCCC-----CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLG-----FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~-----~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++.+.||+|.....+     ..||+|.++.... ......+.+|+++++.++||||        +++++++...+..|+
T Consensus        15 ~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~-~~~~~~~~~ei~~l~~l~h~~i--------~~~~~~~~~~~~~~~   85 (283)
T cd05048          15 EGAFGKVYKGELTGPNERLSATSVAIKTLKENAE-PKVQQEFRQEAELMSDLQHPNI--------VCLLGVCTKEQPTCM   85 (283)
T ss_pred             CccCCcEEEEEEecCCCCcceeeEEEEecccCCC-HHHHHHHHHHHHHHHhcCCccc--------ceEEEEEcCCCceEE
Confidence            5778899999876655     7899999875443 3345568889999999999999        999999999999999


Q ss_pred             EEEccCCC-h-hHHhhhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeC
Q psy6542          87 IGVRQSGP-K-DQISRSKINRY-----------HKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRD  153 (334)
Q Consensus        87 vmEy~~g~-l-~~l~~~~~~~~-----------~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrD  153 (334)
                      +|||++++ + +++........           .......++.++.|++.||.|||+++                ++|||
T Consensus        86 ~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~----------------i~H~d  149 (283)
T cd05048          86 LFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHH----------------FVHRD  149 (283)
T ss_pred             EEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC----------------eeccc
Confidence            99999987 4 34433211000           12244556778889999999999999                99999


Q ss_pred             CCCCceeeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         154 LKPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       154 lKp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||+||++++++.++|+|||+++......    .....++..|++||...  ..+..+|+|+   ++|+++..+..||.+
T Consensus       150 lkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~  229 (283)
T cd05048         150 LAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYG  229 (283)
T ss_pred             cccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999999999998653332    12234567899999743  2244566677   677777657777765


Q ss_pred             CCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHH
Q psy6542         225 ESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQEL  303 (334)
Q Consensus       225 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~l  303 (334)
                      .+...                         +...+....      ..+.....+.++..  +..+|.+.+|..|| +.++
T Consensus       230 ~~~~~-------------------------~~~~i~~~~------~~~~~~~~~~~~~~--l~~~c~~~~p~~Rp~~~~i  276 (283)
T cd05048         230 FSNQE-------------------------VIEMIRSRQ------LLPCPEDCPARVYA--LMIECWNEIPARRPRFKDI  276 (283)
T ss_pred             CCHHH-------------------------HHHHHHcCC------cCCCcccCCHHHHH--HHHHHccCChhhCcCHHHH
Confidence            43111                         111111000      00011233445555  77778888888889 8888


Q ss_pred             HHHHHH
Q psy6542         304 LGSMAR  309 (334)
Q Consensus       304 L~~l~~  309 (334)
                      +++|..
T Consensus       277 ~~~l~~  282 (283)
T cd05048         277 HTRLRS  282 (283)
T ss_pred             HHHHhc
Confidence            887753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.95  E-value=3.2e-27  Score=220.70  Aligned_cols=188  Identities=18%  Similarity=0.172  Sum_probs=144.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||++.++.+++.||+|++.+... .......+.+|..++..++|++|        +++++++.+++.+|+||||
T Consensus        11 ~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~~~~~lv~ey   82 (332)
T cd05623          11 RGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWI--------TTLHYAFQDENNLYLVMDY   82 (332)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCE--------eeEEEEEecCCEEEEEEec
Confidence            46778999999999999999999975432 22233457789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|| +..+.......+   .......++.|++.||.|||+.+                |+||||||+|||++.++.+||
T Consensus        83 ~~~g~L~~~l~~~~~~l---~~~~~~~~~~qi~~al~~lH~~~----------------iiHrDlkp~Nili~~~~~~kL  143 (332)
T cd05623          83 YVGGDLLTLLSKFEDRL---PEDMARFYLAEMVIAIDSVHQLH----------------YVHRDIKPDNILMDMNGHIRL  143 (332)
T ss_pred             cCCCcHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEecCCCHHHEEECCCCCEEE
Confidence            9988 443333222233   33444566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC---CccccCcccccccccc-------ccCCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP---HASVESDCILHGYIKK-------LGGPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       170 ~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-------~~~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      +|||++........   ....||+.|++||+..       .....+|+|+   ++|++ ..+..||.+.+.
T Consensus       144 ~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~el-l~g~~Pf~~~~~  213 (332)
T cd05623         144 ADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEM-LYGETPFYAESL  213 (332)
T ss_pred             eecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHH-hcCCCCCCCCCH
Confidence            99999976543322   2356899999999853       1244567777   55565 556778876653

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.95  E-value=9.4e-27  Score=212.81  Aligned_cols=187  Identities=17%  Similarity=0.177  Sum_probs=144.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||++.+..+++.||||.+.+... .......+.+|+.+++.++|+++        +.+++.+.+++.+|+||||
T Consensus        10 ~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i--------~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630          10 KGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFV--------VSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             cCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCe--------eeeeEEEecCCEEEEEEEe
Confidence            46778999999999999999999986543 22233456779999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISR-SKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~-~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      +.|+ +..... .....+   .....+.++.|++.||.|||+.+                |+||||||+||++++++.++
T Consensus        82 ~~g~~L~~~l~~~~~~~l---~~~~~~~~~~qi~~~l~~lH~~~----------------iiH~dikp~Nil~~~~~~~~  142 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGF---EEGRAVFYAAEICCGLEDLHQER----------------IVYRDLKPENILLDDHGHIR  142 (285)
T ss_pred             cCCCcHHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EEeCCCCHHHEEECCCCCEE
Confidence            9887 543322 221122   44555667789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC-CccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP-HASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||++........ ....|+..|++||+...  .+..+|+|+   ++|+++. +.+||....
T Consensus       143 l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~-g~~Pf~~~~  205 (285)
T cd05630         143 ISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA-GQSPFQQRK  205 (285)
T ss_pred             EeeccceeecCCCccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHh-CCCCCCCCC
Confidence            999999976544332 23467899999998532  244567777   5566554 677876543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.95  E-value=3e-27  Score=242.16  Aligned_cols=196  Identities=16%  Similarity=0.126  Sum_probs=144.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--CCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--PNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--~~~~~ivmE   89 (334)
                      +++...||+|.++.++..||+|++............+..|+.+++.|+||||        |+++++|..  ++.+|||||
T Consensus        23 ~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNI--------Vrl~d~f~de~~~~lyIVME   94 (1021)
T PTZ00266         23 NGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNI--------VRYIDRFLNKANQKLYILME   94 (1021)
T ss_pred             cCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCc--------CeEEEEEEecCCCEEEEEEe
Confidence            4677899999999999999999998766555556678889999999999999        999998853  467999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-----
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-----  163 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-----  163 (334)
                      |++++ +..++..............++.|+.||+.||.|||+.+..         ....+|+||||||+|||++.     
T Consensus        95 Y~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~---------~~~k~IVHRDLKPeNILL~s~~~~l  165 (1021)
T PTZ00266         95 FCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDG---------PNGERVLHRDLKPQNIFLSTGIRHI  165 (1021)
T ss_pred             CCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccc---------cccCCceeccCcHHHeEeecCcccc
Confidence            99987 5443332222222346667788889999999999985310         00122999999999999964     


Q ss_pred             ------------CCCEEEEecccccccCCCC-CCccccCcccccccccc---c-cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         164 ------------HGHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK---L-GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       164 ------------~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~---~-~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                                  .+.+||+|||++..+.... .....||+.|++||+..   . ..+.+|+|+   ++|++ +++..||.
T Consensus       166 g~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYEL-LTGk~PF~  244 (1021)
T PTZ00266        166 GKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYEL-CSGKTPFH  244 (1021)
T ss_pred             ccccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHH-HHCCCCCC
Confidence                        2448999999998765443 23456899999999852   2 234566676   55555 45666775


Q ss_pred             CC
Q psy6542         224 PE  225 (334)
Q Consensus       224 ~~  225 (334)
                      ..
T Consensus       245 ~~  246 (1021)
T PTZ00266        245 KA  246 (1021)
T ss_pred             cC
Confidence            43

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.95  E-value=8.8e-27  Score=212.07  Aligned_cols=179  Identities=15%  Similarity=0.132  Sum_probs=143.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..+++.||||.+..... ....+.+.+|++++++++||||        +++++.+..++..++||||+
T Consensus        11 ~g~~~~v~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~   81 (279)
T cd06619          11 HGNGGTVYKAYHLLTRRILAVKVIPLDIT-VELQKQIMSELEILYKCDSPYI--------IGFYGAFFVENRISICTEFM   81 (279)
T ss_pred             cCCCeEEEEEEEcCCCcEEEEEEEecCCC-hHHHHHHHHHHHHHHhCCCCCe--------eeEEEEEEECCEEEEEEecC
Confidence            56677999999999999999999976533 2244568889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ ++..     ...   ....+..++.|++.||.|||+.+                |+|+||||+||+++.++.++|+
T Consensus        82 ~~~~l~~~-----~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dlkp~Nill~~~~~~~l~  137 (279)
T cd06619          82 DGGSLDVY-----RKI---PEHVLGRIAVAVVKGLTYLWSLK----------------ILHRDVKPSNMLVNTRGQVKLC  137 (279)
T ss_pred             CCCChHHh-----hcC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeeCCCCHHHEEECCCCCEEEe
Confidence            998 4222     112   33445567789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++............++..|++||+.. . .+..+|+|+   ++|+++. +..||..
T Consensus       138 dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~pf~~  195 (279)
T cd06619         138 DFGVSTQLVNSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELAL-GRFPYPQ  195 (279)
T ss_pred             eCCcceecccccccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHh-CCCCchh
Confidence            99999877665555667889999999843 2 244566666   5566554 6667644

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.95  E-value=4.8e-27  Score=239.55  Aligned_cols=190  Identities=17%  Similarity=0.121  Sum_probs=145.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .+++.+.||+|.+..+|+.||||+++.... .....+++.+|+++++.++||||        +++++++.+++..|+|||
T Consensus        11 GkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNI--------Vkl~~v~~d~~~lyLVME   82 (932)
T PRK13184         11 GKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGI--------VPVYSICSDGDPVYYTMP   82 (932)
T ss_pred             ecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCc--------CeEEEEEeeCCEEEEEEE
Confidence            367888999999999999999999986543 34456678899999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhh--hhh-----hHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          90 RQSGP-KDQISRSKI--NRY-----HKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        90 y~~g~-l~~l~~~~~--~~~-----~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      |++|+ +..+.....  ...     .......++.++.||+.||.|||+++                |+||||||+|||+
T Consensus        83 Y~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~G----------------IIHRDLKPeNILL  146 (932)
T PRK13184         83 YIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKG----------------VLHRDLKPDNILL  146 (932)
T ss_pred             cCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCchheEEE
Confidence            99998 444333211  011     11123456778889999999999999                9999999999999


Q ss_pred             CCCCCEEEEecccccccCCCC--------------------CCccccCcccccccccc-cc-CCcceeeh---hHHHHHc
Q psy6542         162 DEHGHVRISDLGLACDFSKKK--------------------PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLF  216 (334)
Q Consensus       162 ~~~~~vkl~DFGla~~~~~~~--------------------~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~  216 (334)
                      +.++.++|+|||+++......                    .....||+.|++||+.. .. +..+|+|+   ++|+++ 
T Consensus       147 d~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELL-  225 (932)
T PRK13184        147 GLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQML-  225 (932)
T ss_pred             cCCCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHH-
Confidence            999999999999998652110                    11246899999999843 23 44566666   555654 


Q ss_pred             CCCCCCCCC
Q psy6542         217 PNRLELHPE  225 (334)
Q Consensus       217 ~~~~~~~~~  225 (334)
                      ++..||...
T Consensus       226 TG~~PF~~~  234 (932)
T PRK13184        226 TLSFPYRRK  234 (932)
T ss_pred             HCCCCCCCc
Confidence            456677553

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.95  E-value=7.1e-27  Score=209.05  Aligned_cols=188  Identities=15%  Similarity=0.105  Sum_probs=146.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||+|.+............+.+|+++++.++|||+        +++++++.+++.+|+||||+
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd08529          10 KGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYI--------IRYYESFLDKGKLNIVMEYA   81 (256)
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCe--------ehheeeeccCCEEEEEEEeC
Confidence            4678899999999999999999998665545556678889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +..+.....  .........+.++.|++.||.|||+.+                ++|+||||+||+++.++.++|+
T Consensus        82 ~~~~L~~~l~~~~--~~~~~~~~~~~i~~~l~~al~~lH~~~----------------i~h~dl~~~nili~~~~~~~l~  143 (256)
T cd08529          82 ENGDLHKLLKMQR--GRPLPEDQVWRFFIQILLGLAHLHSKK----------------ILHRDIKSLNLFLDAYDNVKIG  143 (256)
T ss_pred             CCCcHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCcceEEEeCCCCEEEc
Confidence            887 433323211  112345566777889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC--CccccCcccccccccccc--CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP--HASVESDCILHGYIKKLG--GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~~--~~~~~t~~~~~~~v~~~~--~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+++.......  ....|++.|++||+....  ...+|+|+   ++++++ ++..||...+
T Consensus       144 df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~-~g~~p~~~~~  205 (256)
T cd08529         144 DLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECC-TGKHPFDANN  205 (256)
T ss_pred             ccccceeccCccchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHH-hCCCCCCCCC
Confidence            9999987655432  234678889999985322  44566666   555554 4666765443

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0193|consensus

Probab=99.95  E-value=4.3e-27  Score=223.43  Aligned_cols=184  Identities=17%  Similarity=0.091  Sum_probs=146.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      -+|+++.||+|+...   .||||++......+...+.|.+|+.++++-+|.||        +-|.+++..+.. .||+-+
T Consensus       401 GsGsFGtV~Rg~whG---dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NI--------lLFMG~~~~p~~-AIiTqw  468 (678)
T KOG0193|consen  401 GSGSFGTVYRGRWHG---DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENI--------LLFMGACMNPPL-AIITQW  468 (678)
T ss_pred             ccccccceeeccccc---ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhh--------eeeehhhcCCce-eeeehh
Confidence            467888999999876   89999999988877788899999999999999999        999999987776 999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+|. +...+.-..   ........+.|+.||+.|+.|||.++                |||||||..||++.+++.|||
T Consensus       469 CeGsSLY~hlHv~e---tkfdm~~~idIAqQiaqGM~YLHAK~----------------IIHrDLKSnNIFl~~~~kVkI  529 (678)
T KOG0193|consen  469 CEGSSLYTHLHVQE---TKFDMNTTIDIAQQIAQGMDYLHAKN----------------IIHRDLKSNNIFLHEDLKVKI  529 (678)
T ss_pred             ccCchhhhhccchh---hhhhHHHHHHHHHHHHHhhhhhhhhh----------------hhhhhccccceEEccCCcEEE
Confidence            9999 322212111   33356667888999999999999999                999999999999999999999


Q ss_pred             Eecccccc----cCCCCCCccccCccccccccc----cccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACD----FSKKKPHASVESDCILHGYIK----KLGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~----~~~~~~~~~~~t~~~~~~~v~----~~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +||||+..    ....+.....|..+||+||+.    ..+|++.+|.+   ++++.|.++.+||.+.
T Consensus       530 gDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~  596 (678)
T KOG0193|consen  530 GDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQ  596 (678)
T ss_pred             ecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCC
Confidence            99999963    233344566788999999984    34466555555   5555555566677643

>KOG0614|consensus

Probab=99.95  E-value=4.7e-29  Score=232.20  Aligned_cols=246  Identities=15%  Similarity=0.172  Sum_probs=193.2

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      ++++||-++........+|+|++++... +..-..+...|-.||..++.|.|        |++|..|.+..++|+.||-|
T Consensus       431 GgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fI--------vrLYrTfrd~kyvYmLmEaC  502 (732)
T KOG0614|consen  431 GGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFI--------VRLYRTFRDSKYVYMLMEAC  502 (732)
T ss_pred             CccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHH--------HHHHHHhccchhhhhhHHhh
Confidence            6788999998887777799999998765 44445577789999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      =||.-+-..++.++|.+....++..   .++.|++|||.++                ||.|||||+|++++.+|-+||.|
T Consensus       503 lGGElWTiLrdRg~Fdd~tarF~~a---cv~EAfeYLH~k~----------------iIYRDLKPENllLd~~Gy~KLVD  563 (732)
T KOG0614|consen  503 LGGELWTILRDRGSFDDYTARFYVA---CVLEAFEYLHRKG----------------IIYRDLKPENLLLDNRGYLKLVD  563 (732)
T ss_pred             cCchhhhhhhhcCCcccchhhhhHH---HHHHHHHHHHhcC----------------ceeccCChhheeeccCCceEEee
Confidence            9995565566677887777776655   8999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC-CCccccCcccccccc-ccccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc-ccccccc
Q psy6542         172 LGLACDFSKKK-PHASVESDCILHGYI-KKLGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ-IEEVSQD  245 (334)
Q Consensus       172 FGla~~~~~~~-~~~~~~t~~~~~~~v-~~~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~  245 (334)
                      ||+|+.+..+. +.++||||.|.+||+ +..|+..+.|+|   ++.+.+..+.+||++.+....+++|+.+. ....|..
T Consensus       564 FGFAKki~~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~~Pr~  643 (732)
T KOG0614|consen  564 FGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIEFPRR  643 (732)
T ss_pred             hhhHHHhccCCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhhcccc
Confidence            99999887765 677999999999997 688888888877   55566677888999999888888877663 2333422


Q ss_pred             cccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhc
Q psy6542         246 LITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSL  293 (334)
Q Consensus       246 ~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~  293 (334)
                       .+-+....+...-...|..|++..       ...+.++--+.|+...
T Consensus       644 -I~k~a~~Lik~LCr~~P~ERLG~~-------~~gI~DIkkH~Wf~gf  683 (732)
T KOG0614|consen  644 -ITKTATDLIKKLCRDNPTERLGYQ-------KGGINDIKKHRWFEGF  683 (732)
T ss_pred             -cchhHHHHHHHHHhcCcHhhhccc-------cCChHHHHhhhhhhcC
Confidence             222333333333355799999865       2334555555665543

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.95  E-value=8.1e-27  Score=216.04  Aligned_cols=187  Identities=19%  Similarity=0.162  Sum_probs=136.7

Q ss_pred             CCCceEEEeceeC--CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--CCeEEEE
Q psy6542          12 RVSKWRVKPPSLK--PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--PNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~--~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--~~~~~iv   87 (334)
                      +++...||+|.++  .+++.||||.+......    ..+.+|+++++.++||||        +++++++..  +..+|++
T Consensus        11 ~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~----~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~~~lv   78 (317)
T cd07868          11 RGTYGHVYKAKRKDGKDDRDYALKQIEGTGIS----MSACREIALLRELKHPNV--------ISLQKVFLSHADRKVWLL   78 (317)
T ss_pred             cCCCeEEEEEEEccCCCCceEEEEEECCCCCc----HHHHHHHHHHHhcCCCCC--------cceeeeEecCCCcEEEEE
Confidence            5677899999976  47889999999754332    335679999999999999        999998864  4678999


Q ss_pred             EEccCCChhHHhh-hhh----hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee-
Q psy6542          88 GVRQSGPKDQISR-SKI----NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL-  161 (334)
Q Consensus        88 mEy~~g~l~~l~~-~~~----~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl-  161 (334)
                      |||+.+++..+.. ...    ..........+..++.|++.||.|||+++                |+||||||+|||+ 
T Consensus        79 ~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~----------------ivHrDlkp~Nil~~  142 (317)
T cd07868          79 FDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW----------------VLHRDLKPANILVM  142 (317)
T ss_pred             EeccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCC----------------EEcCCCCHHHEEEe
Confidence            9999998433322 111    01112345556677889999999999999                9999999999999 


Q ss_pred             ---CCCCCEEEEecccccccCCCC-----CCccccCcccccccccc--ccCC-cceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         162 ---DEHGHVRISDLGLACDFSKKK-----PHASVESDCILHGYIKK--LGGP-FVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       162 ---~~~~~vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~--~~~~-~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                         +.++.+||+|||+|+......     .....+|+.|++||+..  ..++ .+|+|+  ++.+.+.++.+||.+..
T Consensus       143 ~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~  220 (317)
T cd07868         143 GEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ  220 (317)
T ss_pred             cCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCc
Confidence               456789999999998765432     22356788999999753  2244 566666  44444455667776554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0196|consensus

Probab=99.95  E-value=5.3e-28  Score=234.74  Aligned_cols=261  Identities=14%  Similarity=0.079  Sum_probs=195.0

Q ss_pred             CCceEEEeceeCCCCC---cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          13 VSKWRVKPPSLKPLGF---PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~---~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +.++.|+.++.+..|+   .||||.|+....++ .+..|..|+.||-++.||||        +++-++.+....+.||+|
T Consensus       640 GEFGEVc~GrLk~pgkre~~VAIKTLK~Gytek-qrrdFL~EAsIMGQFdHPNI--------IrLEGVVTks~PvMIiTE  710 (996)
T KOG0196|consen  640 GEFGEVCSGRLKLPGKREITVAIKTLKAGYTEK-QRRDFLSEASIMGQFDHPNI--------IRLEGVVTKSKPVMIITE  710 (996)
T ss_pred             ccccceecccccCCCCcceeEEEeeeccCccHH-HHhhhhhhhhhcccCCCCcE--------EEEEEEEecCceeEEEhh
Confidence            4567899999887774   58999999766554 34578889999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||++| +|.+++....++   ...++..+++.|+.|+.||-+.+                ++||||...|||+|.+-.+|
T Consensus       711 yMENGsLDsFLR~~DGqf---tviQLVgMLrGIAsGMkYLsdm~----------------YVHRDLAARNILVNsnLvCK  771 (996)
T KOG0196|consen  711 YMENGSLDSFLRQNDGQF---TVIQLVGMLRGIASGMKYLSDMN----------------YVHRDLAARNILVNSNLVCK  771 (996)
T ss_pred             hhhCCcHHHHHhhcCCce---EeehHHHHHHHHHHHhHHHhhcC----------------chhhhhhhhheeeccceEEE
Confidence            99999 777666655566   44556677789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCCCcc--cc---Ccccccccc--ccccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         169 ISDLGLACDFSKKKPHAS--VE---SDCILHGYI--KKLGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~--~~---t~~~~~~~v--~~~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      ++||||+|.+.++....+  .|   ...+++||.  ..+.++.+|+||   ++||.|..+.-                  
T Consensus       772 VsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGER------------------  833 (996)
T KOG0196|consen  772 VSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGER------------------  833 (996)
T ss_pred             eccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCC------------------
Confidence            999999997766653222  22   367888986  355577777777   66666643322                  


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch--hHHHHHHHHHHhCCC--
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC--SQELLGSMARKAGKI--  314 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~--~~~lL~~l~~~~~~~--  314 (334)
                            .+|+. +.+.+...+..+  .|+.    ....+|..|..+|+-||.+++..+.+.  ....|++|-+.+...  
T Consensus       834 ------PYWdm-SNQdVIkaIe~g--yRLP----pPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~SLk~  900 (996)
T KOG0196|consen  834 ------PYWDM-SNQDVIKAIEQG--YRLP----PPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPNSLKT  900 (996)
T ss_pred             ------ccccc-chHHHHHHHHhc--cCCC----CCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCchhhcc
Confidence                  22221 233444444221  2233    347788999999999999887766666  777889998877644  


Q ss_pred             CCCccccccccccccccC
Q psy6542         315 YGTTDREKNSILGTRTAN  332 (334)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~  332 (334)
                      -+......+.+|.+++.+
T Consensus       901 ~~~~~~r~s~~lld~~~~  918 (996)
T KOG0196|consen  901 IAPESPRPSQPLLDRSGS  918 (996)
T ss_pred             cCCCCCCCcccccCCCCC
Confidence            445555666677665544

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.95  E-value=7.4e-27  Score=211.10  Aligned_cols=187  Identities=10%  Similarity=0.017  Sum_probs=141.9

Q ss_pred             CCCCceEEEeceeC---CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          11 SRVSKWRVKPPSLK---PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        11 ~~~~~~~V~~a~~~---~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      ..++.+.||+|..+   ..+..||+|.++..... .....+.+|+.++++++||||        +++++++..++..|+|
T Consensus        14 g~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv   84 (266)
T cd05064          14 GTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSD-KQRRGFLAEALTLGQFDHSNI--------VRLEGVITRGNTMMIV   84 (266)
T ss_pred             cccCCCeEEEEEEecCCCceeeEEEEecCCCCCH-HHHHHHHHHHHHHhcCCCCCc--------CeEEEEEecCCCcEEE
Confidence            35677889998765   56779999999865432 234567889999999999999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||++|+ ++.+.......+   ....++.++.|++.||.|||+++                ++||||||+||+++.++.
T Consensus        85 ~e~~~~~~L~~~l~~~~~~l---~~~~~~~~~~~i~~al~~lH~~~----------------iiH~dikp~nili~~~~~  145 (266)
T cd05064          85 TEYMSNGALDSFLRKHEGQL---VAGQLMGMLPGLASGMKYLSEMG----------------YVHKGLAAHKVLVNSDLV  145 (266)
T ss_pred             EEeCCCCcHHHHHHhCCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeeccccHhhEEEcCCCc
Confidence            9999998 544433322222   45556778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC---CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKP---HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ++++|||++........   ....++..|++||+.. .. +..+|+|+   ++|+++..+..||...
T Consensus       146 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~  212 (266)
T cd05064         146 CKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDM  212 (266)
T ss_pred             EEECCCcccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcC
Confidence            99999998765433221   1223356789999742 23 44667777   6677777677777543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.95  E-value=1e-26  Score=209.73  Aligned_cols=188  Identities=18%  Similarity=0.133  Sum_probs=143.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.++.+++.||||.++.... +......+.+|+++++.++|||+        +++++++.+++.+|++|||
T Consensus        12 ~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~v~e~   83 (267)
T cd08228          12 RGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNV--------IKYLDSFIEDNELNIVLEL   83 (267)
T ss_pred             cCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcce--------eeeeeeEEECCeEEEEEEe
Confidence            46677899999999999999999876443 44455577889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++++ +..+................+.++.|++.||.|||+++                ++|+||||+||+++.++.++|
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~----------------i~H~dl~~~nil~~~~~~~~l  147 (267)
T cd08228          84 ADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRR----------------VMHRDIKPANVFITATGVVKL  147 (267)
T ss_pred             cCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCC----------------eeCCCCCHHHEEEcCCCCEEE
Confidence            9987 44333221111122245556777889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC--CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP--HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       170 ~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|||++........  ....++..|++||...  .....+|+|+   ++|+++. +..||..
T Consensus       148 ~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~-g~~p~~~  208 (267)
T cd08228         148 GDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAA-LQSPFYG  208 (267)
T ss_pred             CccccceeccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhc-CCCCCcc
Confidence            99999987654432  2345778899999743  2244567777   5566655 4555543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=1.4e-26  Score=224.84  Aligned_cols=176  Identities=13%  Similarity=0.044  Sum_probs=137.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..+++.||||...        ...+.+|++++++++|+||        |++++++..++..|+||||+
T Consensus       179 ~G~~G~Vy~a~~~~~~~~vavK~~~--------~~~~~~E~~iL~~L~HpnI--------v~l~~~~~~~~~~~lv~e~~  242 (461)
T PHA03211        179 PGSEGCVFESSHPDYPQRVVVKAGW--------YASSVHEARLLRRLSHPAV--------LALLDVRVVGGLTCLVLPKY  242 (461)
T ss_pred             cCCCeEEEEEEECCCCCEEEEeccc--------ccCHHHHHHHHHHCCCCCC--------CcEEEEEEECCEEEEEEEcc
Confidence            4677899999999999999999643        1234579999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      .+++..........   .....++.++.|++.||.|||+++                |+||||||+|||++.++.+||+|
T Consensus       243 ~~~L~~~l~~~~~~---l~~~~~~~i~~qi~~aL~yLH~~g----------------IvHrDLKP~NILl~~~~~vkL~D  303 (461)
T PHA03211        243 RSDLYTYLGARLRP---LGLAQVTAVARQLLSAIDYIHGEG----------------IIHRDIKTENVLVNGPEDICLGD  303 (461)
T ss_pred             CCCHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHHHCC----------------EEECcCCHHHEEECCCCCEEEcc
Confidence            88743332222222   355666778889999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC----CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCC
Q psy6542         172 LGLACDFSKKK----PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       172 FGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                      ||+++......    .....||..|++||+.. .. ...+|+|+   ++|+++.+....|
T Consensus       304 FGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf  363 (461)
T PHA03211        304 FGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLF  363 (461)
T ss_pred             cCCceecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcc
Confidence            99998654332    12346899999999843 22 44566666   7777776555443

>KOG0667|consensus

Probab=99.95  E-value=3e-27  Score=226.96  Aligned_cols=190  Identities=17%  Similarity=0.143  Sum_probs=152.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      ++++++|-+|++..||+.||||+++....   ...+...|+.||..|+ |.+-   .-..+|+++++|...+++|||+|.
T Consensus       196 kGtFGQVvk~~d~~T~e~VAIKIiKN~k~---f~~Q~~~Ei~iL~~ln~~d~~---~~~n~Vrm~d~F~fr~HlciVfEL  269 (586)
T KOG0667|consen  196 KGSFGQVVKAYDHKTGEIVAIKIIKNKKR---FLRQAQIEIRILELLNKHDPD---DKYNIVRMLDYFYFRNHLCIVFEL  269 (586)
T ss_pred             ccccceeEEEEecCCCcEEEEEeeccChH---HHHHHHHHHHHHHHHhccCCC---CCeeEEEeeeccccccceeeeehh
Confidence            67889999999999999999999996543   4456667999999998 4321   112239999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC--CCE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH--GHV  167 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~--~~v  167 (334)
                      ++-+ .++++.++-..   .....+..++.||+.||.+||+.+                |||.||||+||||.+.  ..|
T Consensus       270 L~~NLYellK~n~f~G---lsl~~ir~~~~Qil~~L~~L~~l~----------------IIHcDLKPENILL~~~~r~~v  330 (586)
T KOG0667|consen  270 LSTNLYELLKNNKFRG---LSLPLVRKFAQQILTALLFLHELG----------------IIHCDLKPENILLKDPKRSRI  330 (586)
T ss_pred             hhhhHHHHHHhcCCCC---CCHHHHHHHHHHHHHHHHHHHhCC----------------eeeccCChhheeeccCCcCce
Confidence            9999 56665554444   456666677779999999999999                9999999999999765  469


Q ss_pred             EEEecccccccCCCCCCccccCcccccccc-ccccCC-cceeeh--hHHHHHcCCCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKKPHASVESDCILHGYI-KKLGGP-FVSAWQ--TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       168 kl~DFGla~~~~~~~~~~~~~t~~~~~~~v-~~~~~~-~~~~w~--~~~~~l~~~~~~~~~~~~  227 (334)
                      ||+|||+|+...+... +++.+-.|-+||| +...|. .-|+||  |+.+.|+.|.+-|.|++.
T Consensus       331 KVIDFGSSc~~~q~vy-tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne  393 (586)
T KOG0667|consen  331 KVIDFGSSCFESQRVY-TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNE  393 (586)
T ss_pred             eEEecccccccCCcce-eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCH
Confidence            9999999998887765 7788899999998 455555 566677  888888888877777763

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.95  E-value=8.4e-27  Score=210.71  Aligned_cols=188  Identities=11%  Similarity=-0.015  Sum_probs=136.1

Q ss_pred             CCCceEEEeceeC--CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLK--PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~--~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++...||+|...  .....+|+|.+..... ......+.+|+++++.++|+||        +++++.+.+.+.+|+|||
T Consensus         5 ~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~e~~~~~~l~h~ni--------i~~~~~~~~~~~~~lv~e   75 (269)
T cd05042           5 NGWFGKVLLGEAHRGMSKARVVVKELRASAT-PDEQLLFLQEVQPYRELNHPNV--------LQCLGQCIESIPYLLVLE   75 (269)
T ss_pred             ccCCceEEEEEEecCCCCeEEEEeecCccCC-hHHHHHHHHHHHHHHhCCCCCc--------ceEEEEECCCCceEEEEE
Confidence            5677789988643  3455788887764432 2334567789999999999999        999999999999999999


Q ss_pred             ccCCC-hh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          90 RQSGP-KD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        90 y~~g~-l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      |++++ +. ++...............+..++.|++.||.|||+++                |+||||||+||++++++.+
T Consensus        76 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~dlkp~Nill~~~~~~  139 (269)
T cd05042          76 FCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQAD----------------FIHSDLALRNCQLTADLSV  139 (269)
T ss_pred             eCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcC----------------EecccccHhheEecCCCcE
Confidence            99987 43 333322111111234456677889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCC----CCccccCcccccccccc--------cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKK----PHASVESDCILHGYIKK--------LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       168 kl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~--------~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ||+|||++.......    .....++..|++||+..        .. ...+|+|+   ++|+++..+..||..
T Consensus       140 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~  212 (269)
T cd05042         140 KIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPD  212 (269)
T ss_pred             EEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCc
Confidence            999999987543321    11223456689999742        12 33566666   778877767777643

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG0574|consensus

Probab=99.95  E-value=1.4e-28  Score=216.36  Aligned_cols=227  Identities=12%  Similarity=0.096  Sum_probs=163.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .+|-+.||+|.++++|+.||||.+.....    .+.+..|++||++++.+++        |++|+.|..+..+|||||||
T Consensus        43 EGSYGSV~KAIH~EsG~v~AIK~VPV~sD----LQEIIKEISIMQQC~S~yV--------VKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   43 EGSYGSVHKAIHRESGHVLAIKKVPVDTD----LQEIIKEISIMQQCKSKYV--------VKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             CCcchHHHHHHHhccCcEEEEEecCccch----HHHHHHHHHHHHHcCCchh--------hhhhhhhccCCceEeehhhc
Confidence            46677899999999999999999875443    3455669999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      ..| ...+.+.+.+.+.+.   .+..++...+.||+|||...                -||||||..|||++-+|..||+
T Consensus       111 GAGSiSDI~R~R~K~L~E~---EIs~iL~~TLKGL~YLH~~~----------------KIHRDIKAGNILLNT~G~AKLA  171 (502)
T KOG0574|consen  111 GAGSISDIMRARRKPLSEQ---EISAVLRDTLKGLQYLHDLK----------------KIHRDIKAGNILLNTDGIAKLA  171 (502)
T ss_pred             CCCcHHHHHHHhcCCccHH---HHHHHHHHHHhHHHHHHHHH----------------HHHhhcccccEEEcccchhhhh
Confidence            988 333435444555443   44455569999999999998                8999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCccccccccc-cccCC-cceeeh--hHHHHHcCCCCCCCCCCCCCcccchhcccccccc-
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIK-KLGGP-FVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS-  243 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~-~~~~~-~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  243 (334)
                      |||.|-.+.+..  .++..|||.+|+|||. ..+|. .+|+|+  +....|+.+++|+.......+.-.+-.....++. 
T Consensus       172 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~K  251 (502)
T KOG0574|consen  172 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKK  251 (502)
T ss_pred             hccccchhhhhHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCC
Confidence            999998876654  5678899999999985 45555 566666  3344447777787555433222222111111111 


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCC
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      +..|...=.+++..++.+.|..|-+.
T Consensus       252 PE~WS~~F~DFi~~CLiK~PE~R~TA  277 (502)
T KOG0574|consen  252 PEEWSSEFNDFIRSCLIKKPEERKTA  277 (502)
T ss_pred             hHhhhhHHHHHHHHHhcCCHHHHHHH
Confidence            11222222345666666666666553

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=6.2e-27  Score=221.02  Aligned_cols=178  Identities=12%  Similarity=0.024  Sum_probs=140.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..+++.||+|+....        ....|+.+++.++|+||        +++++++.+++..|+||||+
T Consensus        76 ~G~~g~Vy~~~~~~~~~~valK~~~~~--------~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~  139 (357)
T PHA03209         76 PGSEGRVFVATKPGQPDPVVLKIGQKG--------TTLIEAMLLQNVNHPSV--------IRMKDTLVSGAITCMVLPHY  139 (357)
T ss_pred             CCCCeEEEEEEECCCCceEEEEeCCcc--------ccHHHHHHHHhCCCCCC--------cChhheEEeCCeeEEEEEcc
Confidence            577889999999999999999975432        22359999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      .|++..........+   ....++.++.||+.||.|||+++                |+||||||+|||++.++.+||+|
T Consensus       140 ~~~l~~~l~~~~~~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivHrDlkp~Nill~~~~~~kl~D  200 (357)
T PHA03209        140 SSDLYTYLTKRSRPL---PIDQALIIEKQILEGLRYLHAQR----------------IIHRDVKTENIFINDVDQVCIGD  200 (357)
T ss_pred             CCcHHHHHHhccCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEECCCCCEEEec
Confidence            988433323222223   45556677889999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC-CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         172 LGLACDFSKKK-PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       172 FGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ||+++...... .....||..|++||+.. .. ...+|+|+   ++|+++.++.++|..
T Consensus       201 fG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~  259 (357)
T PHA03209        201 LGAAQFPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFED  259 (357)
T ss_pred             CccccccccCcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccC
Confidence            99997543332 33456889999999853 22 44566666   778888777766544

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.95  E-value=1.1e-26  Score=207.90  Aligned_cols=184  Identities=15%  Similarity=0.078  Sum_probs=139.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.++.+|+.||+|.+..... ......+.+|+++++.++||||        +++++++.+.+.+|+||||+
T Consensus         5 ~g~~g~vy~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   75 (252)
T cd05084           5 RGNFGEVFSGRLRADNTPVAVKSCRETLP-PDLKAKFLQEARILKQYSHPNI--------VRLIGVCTQKQPIYIVMELV   75 (252)
T ss_pred             cccCccEEEEEEecCCceEEEEecCccCC-HHHHHHHHHHHHHHHhCCCCCc--------ceEEEEEcCCCCeEEEEeec
Confidence            45667999999999999999998875432 3344568889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +...........   .....+.++.|++.||.|||+++                ++||||||+||+++.++.+||+
T Consensus        76 ~~~~L~~~~~~~~~~~---~~~~~~~~~~qi~~~L~~lH~~~----------------i~H~dl~p~nil~~~~~~~kl~  136 (252)
T cd05084          76 QGGDFLTFLRTEGPRL---KVKELIQMVENAAAGMEYLESKH----------------CIHRDLAARNCLVTEKNVLKIS  136 (252)
T ss_pred             cCCcHHHHHHhCCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccccccchheEEEcCCCcEEEC
Confidence            887 433323221122   44556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCcc----ccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         171 DLGLACDFSKKKPHAS----VESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       171 DFGla~~~~~~~~~~~----~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      |||++...........    ..+..|++||....  ....+|+|+   ++|+++..+.+||.
T Consensus       137 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~  198 (252)
T cd05084         137 DFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYA  198 (252)
T ss_pred             ccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcc
Confidence            9999986543321111    11345888987432  244566666   67777766776664

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.95  E-value=1.5e-26  Score=207.24  Aligned_cols=184  Identities=14%  Similarity=0.121  Sum_probs=143.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||++.++.+++.||+|.++..... ...+.+.+|+.+++.++|+|+        +++++++.+++.+|++|||+
T Consensus        10 ~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219          10 EGSFGRALLVQHVNSDQKYAMKEIRLPKSS-SAVEDSRKEAVLLAKMKHPNI--------VAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             ccCCeEEEEEEEcCCCceEEEEEEEcCcch-HHHHHHHHHHHHHHhCCCCCc--------ceEEEEEEECCEEEEEEeeC
Confidence            567789999999999999999999765432 234567789999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|+ + +.+.......+   .....+.++.|++.||.|||+++                ++|+||||+||++++++.+++
T Consensus        81 ~~~~l~~~~~~~~~~~~---~~~~~~~~~~~i~~al~~lH~~~----------------i~H~dl~p~nili~~~~~~~l  141 (255)
T cd08219          81 DGGDLMQKIKLQRGKLF---PEDTILQWFVQMCLGVQHIHEKR----------------VLHRDIKSKNIFLTQNGKVKL  141 (255)
T ss_pred             CCCcHHHHHHhccCCCC---CHHHHHHHHHHHHHHHHHHhhCC----------------cccCCCCcceEEECCCCcEEE
Confidence            987 3 33322221122   45556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|||+++......  .....++..|++||+...  ..+.+|+|+   ++|++ ..+..||..
T Consensus       142 ~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l-~~g~~p~~~  202 (255)
T cd08219         142 GDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYEL-CTLKHPFQA  202 (255)
T ss_pred             cccCcceeecccccccccccCCccccCHHHHccCCcCchhhhhhhchhheeh-hhccCCCCC
Confidence            9999998665433  233567888999998532  244566676   44555 445667654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.95  E-value=9.7e-27  Score=210.37  Aligned_cols=241  Identities=12%  Similarity=0.004  Sum_probs=163.9

Q ss_pred             CCCceEEEeceeCCCCC--cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC------Ce
Q psy6542          12 RVSKWRVKPPSLKPLGF--PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP------NS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~--~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~------~~   83 (334)
                      +++...||++....++.  .||+|.++.........+.+..|+++++.++|+||        +++++++...      ..
T Consensus         9 ~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~   80 (272)
T cd05075           9 EGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNV--------MRLIGVCLQTVESEGYPS   80 (272)
T ss_pred             cccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCc--------ceEEEEEccCCcccCCCC
Confidence            46777999999988776  58999998765444455678889999999999999        9999876432      35


Q ss_pred             EEEEEEccCCC-hh-HHhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCcee
Q psy6542          84 HYIIGVRQSGP-KD-QISRSKIN-RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANIL  160 (334)
Q Consensus        84 ~~ivmEy~~g~-l~-~l~~~~~~-~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiL  160 (334)
                      .+++|||+.++ +. ++...... ..........+.++.|++.||.|||+++                |+||||||+|||
T Consensus        81 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dlkp~Nil  144 (272)
T cd05075          81 PVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKS----------------FIHRDLAARNCM  144 (272)
T ss_pred             cEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCC----------------eeccccchhheE
Confidence            78999999987 43 33222111 1112345556777889999999999999                999999999999


Q ss_pred             eCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcc
Q psy6542         161 LDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKP  231 (334)
Q Consensus       161 l~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~  231 (334)
                      +++++.+||+|||+++.......    ....+++.|++|+... .. ++.+|+|+   ++|+++.++.+||.+.......
T Consensus       145 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~  224 (272)
T cd05075         145 LNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIY  224 (272)
T ss_pred             EcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHH
Confidence            99999999999999987654321    1223456788888743 33 44556666   7778777677777543211000


Q ss_pred             cchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         232 ELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                               ..+.....  .    +..+..+..+.+  +..+|...+|..|+ +.++++.|..
T Consensus       225 -------------------------~~~~~~~~--~----~~~~~~~~~~~~--li~~~l~~~p~~Rps~~~l~~~l~~  270 (272)
T cd05075         225 -------------------------DYLRQGNR--L----KQPPDCLDGLYS--LMSSCWLLNPKDRPSFETLRCELEK  270 (272)
T ss_pred             -------------------------HHHHcCCC--C----CCCCCCCHHHHH--HHHHHcCCCcccCcCHHHHHHHHHh
Confidence                                     00101000  0    011222333444  77788888888888 8888887764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.95  E-value=1.8e-26  Score=213.97  Aligned_cols=183  Identities=16%  Similarity=0.081  Sum_probs=136.8

Q ss_pred             CCCceEEEeceeCCCCCc----EEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFP----IQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~----vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++...||+|....+++.    ||||.++.... ....+.+.+|+.+++.++||||        +++++++..+ ..+++
T Consensus        17 ~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni--------v~~~g~~~~~-~~~~v   86 (316)
T cd05108          17 SGAFGTVYKGLWIPEGEKVKIPVAIKELREATS-PKANKEILDEAYVMASVDNPHV--------CRLLGICLTS-TVQLI   86 (316)
T ss_pred             cCCCceEEEEEEecCCCccceeEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEcCC-Cceee
Confidence            466779999988776665    89999875432 3345578889999999999999        9999998764 56799


Q ss_pred             EEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          88 GVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        88 mEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||+.+|  .+.+.... ..   ......+.++.|++.||.|||+++                |+||||||+|||+++++
T Consensus        87 ~e~~~~g~l~~~l~~~~-~~---~~~~~~~~~~~qi~~~L~~LH~~~----------------iiH~dlkp~Nill~~~~  146 (316)
T cd05108          87 TQLMPFGCLLDYVREHK-DN---IGSQYLLNWCVQIAKGMNYLEERR----------------LVHRDLAARNVLVKTPQ  146 (316)
T ss_pred             eecCCCCCHHHHHHhcc-cc---CCHHHHHHHHHHHHHHHHHHHhcC----------------eeccccchhheEecCCC
Confidence            9999888  34443221 12   244556778889999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCC----ccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPH----ASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~----~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .+||+|||+++........    ...++..|++||+.. .. ...+|+|+   ++|++++.+..||.+
T Consensus       147 ~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~  214 (316)
T cd05108         147 HVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG  214 (316)
T ss_pred             cEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999876544321    122355788898743 33 44566666   677777657777644

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG4721|consensus

Probab=99.95  E-value=1.3e-27  Score=225.24  Aligned_cols=170  Identities=15%  Similarity=0.115  Sum_probs=140.4

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      +.++-||+++.+  ++.||||.++..+         ..+++-|++|+||||        +.|.+++.+--.+|||||||.
T Consensus       135 GaQGAVF~Grl~--netVAVKKV~elk---------ETdIKHLRkLkH~NI--------I~FkGVCtqsPcyCIiMEfCa  195 (904)
T KOG4721|consen  135 GAQGAVFLGRLH--NETVAVKKVRELK---------ETDIKHLRKLKHPNI--------ITFKGVCTQSPCYCIIMEFCA  195 (904)
T ss_pred             Ccccceeeeecc--CceehhHHHhhhh---------hhhHHHHHhccCcce--------eeEeeeecCCceeEEeeeccc
Confidence            456678888754  5899999877322         237888999999999        999999999999999999999


Q ss_pred             CC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          93 GP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        93 g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      .| +.-+++..    .......++.|..+|+.|++|||.+.                |||||||.-||||+.+..|||+|
T Consensus       196 ~GqL~~VLka~----~~itp~llv~Wsk~IA~GM~YLH~hK----------------IIHRDLKSPNiLIs~~d~VKIsD  255 (904)
T KOG4721|consen  196 QGQLYEVLKAG----RPITPSLLVDWSKGIAGGMNYLHLHK----------------IIHRDLKSPNILISYDDVVKISD  255 (904)
T ss_pred             cccHHHHHhcc----CccCHHHHHHHHHHhhhhhHHHHHhh----------------HhhhccCCCceEeeccceEEecc
Confidence            98 54444433    23356667888999999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC-CCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCC
Q psy6542         172 LGLACDFSKKK-PHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       172 FGla~~~~~~~-~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~  221 (334)
                      ||.++.+.... ..+++||..+|+|||.+. + ..+.|+|+   ++||||+++.+.
T Consensus       256 FGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPY  311 (904)
T KOG4721|consen  256 FGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPY  311 (904)
T ss_pred             ccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCc
Confidence            99999876664 356889999999999543 3 66888888   899999887753

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.95  E-value=1.8e-26  Score=206.38  Aligned_cols=238  Identities=16%  Similarity=0.063  Sum_probs=172.5

Q ss_pred             CCCceEEEeceeCCC---CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPL---GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~---~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++.+.||+|.+...   +..||||.++...... ..+.+.+|+++++.++|+|+        +++++++.+++.+++||
T Consensus         5 ~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~~~~~lv~   75 (262)
T cd00192           5 EGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE-ERKDFLKEARVMKKLGHPNV--------VRLLGVCTEEEPLYLVL   75 (262)
T ss_pred             cCCceEEEEEEEecCCCCCceEEeEeeccccchh-HHHHHHHHHHHHhhcCCCCh--------heeeeeecCCCceEEEE
Confidence            567789999999876   9999999998765543 45678889999999999999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhhhhh-----hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          89 VRQSGP-KDQISRSKINR-----YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~-----~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      ||+.|+ +..........     .........+.++.|++.||.|||+++                ++||||||+||+++
T Consensus        76 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~----------------i~H~di~p~nili~  139 (262)
T cd00192          76 EYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKK----------------FVHRDLAARNCLVG  139 (262)
T ss_pred             EeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC----------------cccCccCcceEEEC
Confidence            999777 44333332100     123356667788889999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCCC----CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccc
Q psy6542         163 EHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPEL  233 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~  233 (334)
                      +++.++|+|||++.......    .....++..|++||....  ....+|+|+   ++|+++..+..||...+...    
T Consensus       140 ~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~----  215 (262)
T cd00192         140 EDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEE----  215 (262)
T ss_pred             CCCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHH----
Confidence            99999999999998776542    333456788999997432  345677777   66777776677765442100    


Q ss_pred             hhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHH
Q psy6542         234 IFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSM  307 (334)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l  307 (334)
                                           +...+..      ....+.....++.+.+  +..++...+|..|+ +.++++++
T Consensus       216 ---------------------~~~~~~~------~~~~~~~~~~~~~~~~--li~~~l~~~p~~Rps~~~l~~~l  261 (262)
T cd00192         216 ---------------------VLEYLRK------GYRLPKPEYCPDELYE--LMLSCWQLDPEDRPTFSELVERL  261 (262)
T ss_pred             ---------------------HHHHHHc------CCCCCCCccCChHHHH--HHHHHccCCcccCcCHHHHHHhh
Confidence                                 0011100      0000112233444555  77788888888888 88887765

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.95  E-value=3.8e-26  Score=211.08  Aligned_cols=185  Identities=13%  Similarity=0.167  Sum_probs=144.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++.+..+|..||+|.+..... ......+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        11 ~G~~g~v~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~ey~   81 (308)
T cd06615          11 AGNGGVVTKVLHRPSGLIMARKLIHLEIK-PAIRNQIIRELKVLHECNSPYI--------VGFYGAFYSDGEISICMEHM   81 (308)
T ss_pred             CCCCeEEEEEEEcCCCeEEEEEEeccccC-HHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEeeCCEEEEEeecc
Confidence            45667999999999999999999875432 3344567789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|+ +..+.... ..+   .......++.|++.||.|||+ .+                ++||||||+|||+++++.+||
T Consensus        82 ~~~~L~~~l~~~-~~~---~~~~~~~~~~~i~~~l~~lH~~~~----------------i~H~dl~p~nil~~~~~~~~l  141 (308)
T cd06615          82 DGGSLDQVLKKA-GRI---PENILGKISIAVLRGLTYLREKHK----------------IMHRDVKPSNILVNSRGEIKL  141 (308)
T ss_pred             CCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhhCC----------------EEECCCChHHEEEecCCcEEE
Confidence            987 54333322 222   445566778899999999997 57                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++............++..|++||+...  ....+|+|+   ++|+++ .+..||.+..
T Consensus       142 ~dfg~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~-~g~~p~~~~~  202 (308)
T cd06615         142 CDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMA-IGRYPIPPPD  202 (308)
T ss_pred             ccCCCcccccccccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHH-hCCCCCCCcc
Confidence            9999998765555556678889999998532  234566666   555554 5566765443

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.94  E-value=7.2e-27  Score=212.59  Aligned_cols=187  Identities=18%  Similarity=0.140  Sum_probs=144.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.+..+|+.||||.+..........+.+.+|+.+++.++|||+        +++++++..++.+|+||||+
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~~~~~~v~e~~   81 (286)
T cd07832          10 EGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYV--------VKLLDVFPHGSGFVLVMEYM   81 (286)
T ss_pred             cCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCC--------cceeeEEecCCeeEEEeccc
Confidence            4566789999999999999999998766544455678889999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      .+++..+.......+   ....++.++.|++.||.|||+.+                ++|+||||+||++++++.++|+|
T Consensus        82 ~~~L~~~~~~~~~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dl~p~ni~~~~~~~~~l~d  142 (286)
T cd07832          82 PSDLSEVLRDEERPL---PEAQVKSYMRMLLKGVAYMHANG----------------IMHRDLKPANLLISADGVLKIAD  142 (286)
T ss_pred             CCCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCcCHHHEEEcCCCcEEEee
Confidence            444543333222223   44556677889999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC---CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         172 LGLACDFSKKK---PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       172 FGla~~~~~~~---~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ||++.......   .....++..|++||+..  .. ...+|+|+   ++|+++++ .++|.+.+
T Consensus       143 fg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg-~~~~~~~~  205 (286)
T cd07832         143 FGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNG-SPLFPGEN  205 (286)
T ss_pred             eeecccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcC-CcCcCCCC
Confidence            99998775543   23345788899999842  22 44566666   55565554 66665544

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.94  E-value=3.1e-26  Score=208.72  Aligned_cols=229  Identities=23%  Similarity=0.229  Sum_probs=155.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc-hHHhhhHHHHHHHH---HhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE-SRVAKWRPYIQEIF---NHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~-~~~~~~~~~E~~il---~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .++.+.||++.+..+|+.||||.+.+.... ......+.+|..++   ...+|||+        +.+++++..++.+|+|
T Consensus         4 ~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--------~~~~~~~~~~~~~~lv   75 (279)
T cd05633           4 RGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFI--------VCMTYAFHTPDKLCFI   75 (279)
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcE--------eEEEEEEecCCeEEEE
Confidence            467789999999999999999999865442 11222333444433   34579999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.|+ +....... ..+   ....+..++.|++.||.|||+.+                ++||||||+|||+++++.
T Consensus        76 ~e~~~~~~L~~~i~~~-~~l---~~~~~~~i~~qi~~al~~lH~~~----------------ivH~dikp~Nil~~~~~~  135 (279)
T cd05633          76 LDLMNGGDLHYHLSQH-GVF---SEKEMRFYATEIILGLEHMHNRF----------------VVYRDLKPANILLDEHGH  135 (279)
T ss_pred             EecCCCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cCCCCCCHHHEEECCCCC
Confidence            9999988 43332221 122   44555677789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCCCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhc--cc
Q psy6542         167 VRISDLGLACDFSKKKPHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFM--DQ  238 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~--~~  238 (334)
                      ++|+|||++............|+..|++||+..  .. ...+|+|+   ++|++ .++..||..............  ..
T Consensus       136 ~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l-~~g~~pf~~~~~~~~~~~~~~~~~~  214 (279)
T cd05633         136 VRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKL-LRGHSPFRQHKTKDKHEIDRMTLTV  214 (279)
T ss_pred             EEEccCCcceeccccCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHH-HhCCCCcCCCCCcCHHHHHHHhhcC
Confidence            999999999876655555567889999999853  22 44567777   45555 556667765432211111000  00


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ....+.... ......+...+..+|..|.++.
T Consensus       215 ~~~~~~~~~-~~~~~li~~~l~~~p~~R~~~~  245 (279)
T cd05633         215 NVELPDSFS-PELKSLLEGLLQRDVSKRLGCL  245 (279)
T ss_pred             CcCCccccC-HHHHHHHHHHhcCCHHHhcCCC
Confidence            001111111 1234455666667787777655

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.94  E-value=1.1e-26  Score=212.78  Aligned_cols=188  Identities=16%  Similarity=0.123  Sum_probs=145.5

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHYIIG   88 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~ivm   88 (334)
                      ..++.+.||+|.++.+++.||||.++...........+.+|+++++.++||||        +++++++..+  +.+|+||
T Consensus        14 g~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni--------~~~~~~~~~~~~~~~~lv~   85 (293)
T cd07843          14 EEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNI--------VTVKEVVVGSNLDKIYMVM   85 (293)
T ss_pred             cCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCE--------EEEEEEEEecCCCcEEEEe
Confidence            35667899999999999999999998665544444566789999999999999        9999998877  8899999


Q ss_pred             EccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          89 VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        89 Ey~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||+++++..+.......   ......+.++.|++.||.|||+.+                ++|+||||+||++++++.++
T Consensus        86 e~~~~~L~~~~~~~~~~---l~~~~~~~i~~qi~~aL~~LH~~~----------------i~H~dl~p~nili~~~~~~~  146 (293)
T cd07843          86 EYVEHDLKSLMETMKQP---FLQSEVKCLMLQLLSGVAHLHDNW----------------ILHRDLKTSNLLLNNRGILK  146 (293)
T ss_pred             hhcCcCHHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHHHCC----------------eeeccCCHHHEEECCCCcEE
Confidence            99998754443332222   245556677889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||++.......  .....++..|++||+...   ....+|.|+   ++|++ ..+.+||.+.+
T Consensus       147 l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l-~~g~~~f~~~~  211 (293)
T cd07843         147 ICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAEL-LTKKPLFPGKS  211 (293)
T ss_pred             EeecCceeeccCCccccccccccccccCchhhcCCccccchhhHHHHHHHHHHH-HhCCCCCCCCC
Confidence            99999998765542  223456788999997432   244567777   55555 45566776654

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=3.2e-26  Score=208.75  Aligned_cols=187  Identities=14%  Similarity=0.186  Sum_probs=143.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++.+..+|+.||+|.++....+ .....+.+|+++++.++|+||        +++++.+..++.+|+||||+
T Consensus        11 ~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~-~~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~~~~~lv~e~~   81 (286)
T cd06622          11 KGNYGSVYKVLHRPTGVTMAMKEIRLELDE-SKFNQIIMELDILHKAVSPYI--------VDFYGAFFIEGAVYMCMEYM   81 (286)
T ss_pred             ccCCeEEEEEEEcCCCcEEEEEEeecccCH-HHHHHHHHHHHHHHhcCCCcH--------HhhhhheecCCeEEEEEeec
Confidence            467789999999999999999999754332 233567789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|+ ++.+...... ........+..++.|++.||.|||+ .+                ++||||||+||++++++.++|
T Consensus        82 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~LH~~~~----------------i~H~dl~p~nil~~~~~~~~l  144 (286)
T cd06622          82 DAGSLDKLYAGGVA-TEGIPEDVLRRITYAVVKGLKFLKEEHN----------------IIHRDVKPTNVLVNGNGQVKL  144 (286)
T ss_pred             CCCCHHHHHHhccc-cCCCCHHHHHHHHHHHHHHHHHHHhcCC----------------EeeCCCCHHHEEECCCCCEEE
Confidence            998 5444333210 1122455566777899999999997 47                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccccc--------CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKKLG--------GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~~--------~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||++..+.........++..|++||+....        ...+|+|+   ++|++ ..+..||...
T Consensus       145 ~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l-~~g~~pf~~~  210 (286)
T cd06622         145 CDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEM-ALGRYPYPPE  210 (286)
T ss_pred             eecCCcccccCCccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHH-HhCCCCCCCc
Confidence            99999987765555556678889999974221        33566666   55555 4566677543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.94  E-value=2.4e-26  Score=210.33  Aligned_cols=227  Identities=20%  Similarity=0.192  Sum_probs=162.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++.+.||++.+..+++.||||.+..... .......+.+|+++++.++||||        +++++++..++.+|+||||
T Consensus        11 ~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~v~e~   82 (290)
T cd05580          11 TGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFL--------VNLYGSFQDDSNLYLVMEY   82 (290)
T ss_pred             cCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCc--------cceeeEEEcCCeEEEEEec
Confidence            46778999999999999999999986543 22334567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +....... ..+   .......++.|++.||.|||+.+                ++|+||+|+||+++.++.+||
T Consensus        83 ~~~~~L~~~~~~~-~~l---~~~~~~~~~~qil~~l~~lH~~~----------------i~H~dl~p~nili~~~~~~kl  142 (290)
T cd05580          83 VPGGELFSHLRKS-GRF---PEPVARFYAAQVVLALEYLHSLD----------------IVYRDLKPENLLLDSDGYIKI  142 (290)
T ss_pred             CCCCCHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EecCCCCHHHEEECCCCCEEE
Confidence            9777 43332222 223   44555667789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccccc
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQ  244 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  244 (334)
                      +|||++...... .....+++.|++||... .. ...+|+|+   ++|+++. +..||...+.....+.+.... ...+.
T Consensus       143 ~dfg~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~-~~~~~  219 (290)
T cd05580         143 TDFGFAKRVKGR-TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLA-GYPPFFDDNPIQIYEKILEGK-VRFPS  219 (290)
T ss_pred             eeCCCccccCCC-CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHhcCC-ccCCc
Confidence            999999876555 34456788899999742 22 44567777   5566654 666776554222222222111 11222


Q ss_pred             ccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         245 DLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       245 ~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .. +......+..++..+|..|+...
T Consensus       220 ~~-~~~l~~li~~~l~~~p~~R~~~~  244 (290)
T cd05580         220 FF-SPDAKDLIRNLLQVDLTKRLGNL  244 (290)
T ss_pred             cC-CHHHHHHHHHHccCCHHHccCcc
Confidence            22 22334556666667787776543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.94  E-value=5e-26  Score=207.22  Aligned_cols=229  Identities=23%  Similarity=0.231  Sum_probs=156.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc-hHHhhhHHHH---HHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE-SRVAKWRPYI---QEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~-~~~~~~~~~E---~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .++.+.||+|.+..+++.||||.+.+.... ......+..|   .++++...||+|        +.+++++.+++.+|+|
T Consensus         4 ~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--------~~~~~~~~~~~~~~~v   75 (278)
T cd05606           4 RGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFI--------VCMSYAFHTPDKLSFI   75 (278)
T ss_pred             cCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcE--------eeeeeeeecCCEEEEE
Confidence            466789999999999999999999875432 1111122233   344555789999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.|+ +....... ..+   ....+..++.|++.||.|||+.+                ++||||||+||+++.++.
T Consensus        76 ~e~~~g~~L~~~l~~~-~~l---~~~~~~~~~~ql~~~l~~lH~~~----------------i~H~di~p~nili~~~~~  135 (278)
T cd05606          76 LDLMNGGDLHYHLSQH-GVF---SEAEMRFYAAEIILGLEHMHNRF----------------VVYRDLKPANILLDEHGH  135 (278)
T ss_pred             EecCCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EEcCCCCHHHEEECCCCC
Confidence            9999988 54333222 122   44556677789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCCCccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccc--hhccc
Q psy6542         167 VRISDLGLACDFSKKKPHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPEL--IFMDQ  238 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~--i~~~~  238 (334)
                      ++|+|||++..+.........|+..|++||+...   ....+|+|+   ++|+++ ++..||...........  .....
T Consensus       136 ~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~-~g~~p~~~~~~~~~~~~~~~~~~~  214 (278)
T cd05606         136 VRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL-RGHSPFRQHKTKDKHEIDRMTLTM  214 (278)
T ss_pred             EEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHH-hCCCCCCCCCccchHHHHHHhhcc
Confidence            9999999998776655566778999999998532   234566777   555554 56778765532111111  11111


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ....+... +....+.+...+..+|..|+.+.
T Consensus       215 ~~~~~~~~-s~~~~~li~~~l~~~p~~R~~~~  245 (278)
T cd05606         215 AVELPDSF-SPELRSLLEGLLQRDVNRRLGCL  245 (278)
T ss_pred             CCCCCCcC-CHHHHHHHHHHhhcCHHhccCCC
Confidence            11111111 12344556666667777777544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.94  E-value=3.6e-26  Score=206.73  Aligned_cols=188  Identities=12%  Similarity=0.007  Sum_probs=139.1

Q ss_pred             CCCceEEEeceeC--CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLK--PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~--~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|...  .++..+|+|.++...... ....+.+|+.+++.++||||        +++++.+.+...+++|||
T Consensus         5 ~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e   75 (269)
T cd05087           5 NGWFGKVILGEVNSGYTPAQVVVKELRVSASVQ-EQMKFLEEAQPYRSLQHSNL--------LQCLGQCTEVTPYLLVME   75 (269)
T ss_pred             ccCCceEEEEEEcCCCCceEEEEEecCCCCChH-HHHHHHHHHHHHHhCCCCCE--------eeEEEEEcCCCCcEEEEE
Confidence            5778899999754  466789999988655422 33467789999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          90 RQSGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        90 y~~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      |++|+ +..+... ............+..++.|++.||.|||+.+                ++||||||+||+++.++.+
T Consensus        76 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~----------------i~H~dlkp~nil~~~~~~~  139 (269)
T cd05087          76 FCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNN----------------FIHSDLALRNCLLTADLTV  139 (269)
T ss_pred             CCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC----------------EeccccCcceEEEcCCCcE
Confidence            99987 4333222 2111111234455567789999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCC----CCccccCccccccccccc---------cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKK----PHASVESDCILHGYIKKL---------GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       168 kl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~---------~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ||+|||+++......    .....++..|++||+...         ....+|+|+   ++|+++..+..||..
T Consensus       140 kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~  212 (269)
T cd05087         140 KIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRH  212 (269)
T ss_pred             EECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCC
Confidence            999999997543332    122345677899998532         134566676   667776657777643

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.94  E-value=4.4e-26  Score=210.39  Aligned_cols=184  Identities=16%  Similarity=0.048  Sum_probs=143.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||++.+..+|+.||||.+..... .....+.+.+|+++++.++|||+        +++++++.+++..|+||||
T Consensus        25 ~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~ni--------v~~~~~~~~~~~~~lv~e~   96 (307)
T cd06607          25 HGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNT--------IEYKGCYLREHTAWLVMEY   96 (307)
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCE--------EEEEEEEEeCCeEEEEHHh
Confidence            46778999999999999999999975543 33344567889999999999999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +.|++..+........   ....+..++.|++.||.|||+.+                ++||||+|+||++++++.++|+
T Consensus        97 ~~g~l~~~~~~~~~~l---~~~~~~~~~~ql~~~L~~LH~~~----------------i~H~dl~p~nIl~~~~~~~kL~  157 (307)
T cd06607          97 CLGSASDILEVHKKPL---QEVEIAAICHGALQGLAYLHSHE----------------RIHRDIKAGNILLTEPGTVKLA  157 (307)
T ss_pred             hCCCHHHHHHHcccCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ceecCCCcccEEECCCCCEEEe
Confidence            9988433333222222   44556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCccccCcccccccccc-----ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPHASVESDCILHGYIKK-----LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~t~~~~~~~v~~-----~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++......  ....++..|++||+..     .....+|+|+   ++|+++. +..||...
T Consensus       158 dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~t-g~~p~~~~  217 (307)
T cd06607         158 DFGSASLVSPA--NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPLFNM  217 (307)
T ss_pred             ecCcceecCCC--CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHc-CCCCCCCc
Confidence            99999765433  2345678899999742     2244667777   5566654 56666544

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.94  E-value=8e-27  Score=212.29  Aligned_cols=186  Identities=17%  Similarity=0.178  Sum_probs=144.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.++.+|+.||+|.+..........+.+.+|+++++.++|+|+        +++++++..++.+++||||+
T Consensus        11 ~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i--------~~~~~~~~~~~~~~~v~e~~   82 (286)
T cd07847          11 EGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNL--------VNLIEVFRRKRKLHLVFEYC   82 (286)
T ss_pred             ccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCE--------eeeeeEEeeCCEEEEEEecc
Confidence            4556799999999999999999987654433344567789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +++ ++.+.... ..   ........++.|++.||.|||+.+                ++||||||+||++++++.++|+
T Consensus        83 ~~~~l~~~~~~~-~~---~~~~~~~~~~~ql~~~l~~LH~~~----------------i~H~dl~p~nil~~~~~~~~l~  142 (286)
T cd07847          83 DHTVLNELEKNP-RG---VPEHLIKKIIWQTLQAVNFCHKHN----------------CIHRDVKPENILITKQGQIKLC  142 (286)
T ss_pred             CccHHHHHHhCC-CC---CCHHHHHHHHHHHHHHHHHHHHCC----------------ceecCCChhhEEEcCCCcEEEC
Confidence            998 44443221 12   245566677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||++.......  .....++..|++||+..  .. ...+|+|+   ++|+++ .+.+||.+.+
T Consensus       143 dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~-~g~~p~~~~~  205 (286)
T cd07847         143 DFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELL-TGQPLWPGKS  205 (286)
T ss_pred             ccccceecCCCcccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHH-hCCCCCCCCC
Confidence            999998765543  22345678889999743  22 34566666   555554 4667876554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=1.5e-26  Score=221.04  Aligned_cols=181  Identities=14%  Similarity=0.085  Sum_probs=138.4

Q ss_pred             CCCCceEEEeceeC--CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          11 SRVSKWRVKPPSLK--PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        11 ~~~~~~~V~~a~~~--~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      .+++...||+|...  .++..||+|.+...       +...+|+++++.++||||        +++++++...+.+|+||
T Consensus       101 g~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-------~~~~~E~~il~~l~h~~i--------v~~~~~~~~~~~~~lv~  165 (392)
T PHA03207        101 TPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-------KTPGREIDILKTISHRAI--------INLIHAYRWKSTVCMVM  165 (392)
T ss_pred             cCCCCeEEEEEEEcCCccceeEEEEecccc-------ccHHHHHHHHHhcCCCCc--------cceeeeEeeCCEEEEEe
Confidence            35777899998754  56788999988743       234569999999999999        99999999999999999


Q ss_pred             EccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          89 VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        89 Ey~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||+.+++...... ...+   ....++.++.||+.||.|||+++                |+||||||+|||++.++.++
T Consensus       166 e~~~~~l~~~l~~-~~~l---~~~~~~~i~~ql~~aL~~LH~~g----------------ivHrDlkp~Nill~~~~~~~  225 (392)
T PHA03207        166 PKYKCDLFTYVDR-SGPL---PLEQAITIQRRLLEALAYLHGRG----------------IIHRDVKTENIFLDEPENAV  225 (392)
T ss_pred             hhcCCCHHHHHHh-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCCHHHEEEcCCCCEE
Confidence            9999884332221 1222   45556777889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC----CccccCccccccccccc-cC-Ccceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP----HASVESDCILHGYIKKL-GG-PFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       169 l~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~~-~~-~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      |+|||+++.......    ....||..|++||+... .+ ..+|+|+   ++|++++ +..||.+...
T Consensus       226 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~-g~~pf~~~~~  292 (392)
T PHA03207        226 LGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSV-KNVTLFGKQV  292 (392)
T ss_pred             EccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHH-CCCCCCCCCC
Confidence            999999986654332    23568999999998532 23 4566666   5566655 5557766553

>KOG0579|consensus

Probab=99.94  E-value=6.9e-28  Score=229.25  Aligned_cols=228  Identities=15%  Similarity=0.071  Sum_probs=163.2

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      |-+++||+|.+++|+...|-|+|.....+  ....+.-|++||..++||+|        |++++.|...+.+||..|||.
T Consensus        43 GAFGKVyKA~nket~~lAAaKvIetkseE--ELEDylVEIeILa~CdHP~i--------vkLl~ayy~enkLwiliEFC~  112 (1187)
T KOG0579|consen   43 GAFGKVYKAVNKETKLLAAAKVIETKSEE--ELEDYLVEIEILAECDHPVI--------VKLLSAYYFENKLWILIEFCG  112 (1187)
T ss_pred             ccchhhhhhhcccchhhhhhhhhcccchh--HHhhhhhhhhhhhcCCChHH--------HHHHHHHhccCceEEEEeecC
Confidence            45779999999999999999999865543  34456679999999999999        999999999999999999999


Q ss_pred             CC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          93 GP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        93 g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      || -|.+...-.+.+   .+..+..+++|++.||.|||+++                |||||||..|||+.-+|.++|+|
T Consensus       113 GGAVDaimlEL~r~L---tE~QIqvvc~q~ldALn~LHs~~----------------iIHRDLKAGNiL~TldGdirLAD  173 (1187)
T KOG0579|consen  113 GGAVDAIMLELGRVL---TEDQIQVVCYQVLDALNWLHSQN----------------IIHRDLKAGNILLTLDGDIRLAD  173 (1187)
T ss_pred             CchHhHHHHHhcccc---chHHHHHHHHHHHHHHHHHhhcc----------------hhhhhccccceEEEecCcEeeec
Confidence            99 555544333333   55566677889999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC--CCccccCcccccccc------ccccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccc
Q psy6542         172 LGLACDFSKKK--PHASVESDCILHGYI------KKLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQI  239 (334)
Q Consensus       172 FGla~~~~~~~--~~~~~~t~~~~~~~v------~~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  239 (334)
                      ||.+.......  ..++.|||+||+|+|      .+.+|. .+|+|+   ++.+| +-..+|.+-.+.....-.+.....
T Consensus       174 FGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEM-AqiEPPHhelnpMRVllKiaKSeP  252 (1187)
T KOG0579|consen  174 FGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEM-AQIEPPHHELNPMRVLLKIAKSEP  252 (1187)
T ss_pred             ccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHH-hccCCCccccchHHHHHHHhhcCC
Confidence            99987655443  467899999999998      456666 456666   44455 444555544432211111111111


Q ss_pred             ccccc-ccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         240 EEVSQ-DLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       240 ~~~~~-~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .++.. .-|...=.+.+..++.++|..|.+..
T Consensus       253 PTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aa  284 (1187)
T KOG0579|consen  253 PTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAA  284 (1187)
T ss_pred             CcccCcchhhhHHHHHHHHHHhcCCccCCCHH
Confidence            11111 11111223456666677777776654

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.94  E-value=3.1e-26  Score=205.80  Aligned_cols=185  Identities=11%  Similarity=0.070  Sum_probs=139.8

Q ss_pred             CCCceEEEece--eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPS--LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~--~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .++...||+|.  .+.++..||+|+++....+....+.+.+|+.+++.++||||        +++++++. ++..++|||
T Consensus         5 ~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~-~~~~~lv~e   75 (257)
T cd05116           5 SGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYI--------VRMIGICE-AESWMLVME   75 (257)
T ss_pred             CcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCc--------ceEEEEEc-CCCcEEEEe
Confidence            45667899985  45778999999998666555566778899999999999999        99999875 456799999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++++ +..+.... ..+   .....+.++.|++.||.|||+++                ++||||||+||++++++.+|
T Consensus        76 ~~~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~al~~lH~~~----------------i~H~dlkp~nill~~~~~~k  135 (257)
T cd05116          76 LAELGPLNKFLQKN-KHV---TEKNITELVHQVSMGMKYLEETN----------------FVHRDLAARNVLLVTQHYAK  135 (257)
T ss_pred             cCCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeecccchhhEEEcCCCeEE
Confidence            99988 54332221 122   44556677889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCCC-----ccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKPH-----ASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       169 l~DFGla~~~~~~~~~-----~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |+|||+++........     ...++..|++||.... . ...+|+|+   ++|+++..+..||.+.
T Consensus       136 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  202 (257)
T cd05116         136 ISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM  202 (257)
T ss_pred             ECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999876544321     1223467889997432 2 34566666   6677776577776543

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=4.5e-26  Score=204.87  Aligned_cols=184  Identities=17%  Similarity=0.173  Sum_probs=140.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc---hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE---SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~---~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      .++...||+|.+..+++.||+|.+......   ....+.+.+|++++++++||||        +++++++.+++.+|+||
T Consensus        12 ~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~v~   83 (263)
T cd06625          12 QGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERI--------VQYYGCLRDDETLSIFM   83 (263)
T ss_pred             CCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCe--------eeeEEEEccCCeEEEEE
Confidence            345668999999999999999999865432   2223467889999999999999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||++|+ +....... ..+   .......++.|++.||.|||+.+                ++||||||+||++++++.+
T Consensus        84 e~~~~~~l~~~~~~~-~~~---~~~~~~~~~~~l~~~l~~lH~~~----------------i~H~dl~p~nilv~~~~~~  143 (263)
T cd06625          84 EYMPGGSVKDQLKAY-GAL---TETVTRKYTRQILEGVEYLHSNM----------------IVHRDIKGANILRDSAGNV  143 (263)
T ss_pred             EECCCCcHHHHHHHh-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEEcCCCCE
Confidence            999988 43332221 122   34445667789999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCC-----CccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKKP-----HASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       168 kl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|+|||+++.......     ....++..|++||+...  ....+|+|+   ++|+++. +..||..
T Consensus       144 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~  209 (263)
T cd06625         144 KLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLT-EKPPWAE  209 (263)
T ss_pred             EEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHh-CCCCccc
Confidence            9999999976543221     23456788999998432  245667777   5666654 5566643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>KOG4250|consensus

Probab=99.94  E-value=3.4e-27  Score=227.78  Aligned_cols=193  Identities=19%  Similarity=0.212  Sum_probs=148.6

Q ss_pred             cCCCCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC-----
Q psy6542           8 PRESRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN-----   82 (334)
Q Consensus         8 ~~~~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~-----   82 (334)
                      .+=-.|....||++++++||..||||.+++.... ....+..+|+++|++|+|+||        |+++++-++..     
T Consensus        19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~-r~~e~~~~EieilkKLnh~NI--------Vk~f~iee~~~~~~~~   89 (732)
T KOG4250|consen   19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSL-RPRERWCREIEILKKLNHPNI--------VKLFDIEETKFLGLVT   89 (732)
T ss_pred             hhhcCCccceeeeecccccccchhHHhhhhhccc-chHHHHHHHHHHHHHcCchhh--------hhhcccCCccccCccc
Confidence            3334677889999999999999999999976642 234466779999999999999        99999987654     


Q ss_pred             -eEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCcee
Q psy6542          83 -SHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANIL  160 (334)
Q Consensus        83 -~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiL  160 (334)
                       ...+|||||.|| +.......-+. ..+++..++.++..++.||.|||+++                |+||||||.||+
T Consensus        90 ~~~vlvmEyC~gGsL~~~L~~PEN~-~GLpE~e~l~lL~d~~~al~~LrEn~----------------IvHRDlKP~NIv  152 (732)
T KOG4250|consen   90 RLPVLVMEYCSGGSLRKVLNSPENA-YGLPESEFLDLLSDLVSALRHLRENG----------------IVHRDLKPGNIV  152 (732)
T ss_pred             ccceEEEeecCCCcHHHHhcCcccc-cCCCHHHHHHHHHHHHHHHHHHHHcC----------------ceeccCCCCcEE
Confidence             468999999999 54444443322 22356667778889999999999999                999999999999


Q ss_pred             e--CCCCC--EEEEecccccccCCCCC-CccccCcccccccccc--ccCCccee-eh---hHHHHHcCCCCCCCCCCC
Q psy6542         161 L--DEHGH--VRISDLGLACDFSKKKP-HASVESDCILHGYIKK--LGGPFVSA-WQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       161 l--~~~~~--vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~--~~~~~~~~-w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      +  ..+|+  .||+|||.|+.+.+... .+..||..|.+|++..  ..|+...| ||   ++|++ ++|..||-....
T Consensus       153 l~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~c-aTG~lPF~p~~~  229 (732)
T KOG4250|consen  153 LQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYEC-ATGELPFIPFGG  229 (732)
T ss_pred             EeecCCCceEEeeecccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHH-hccCCCCCcCCC
Confidence            8  33344  69999999999888765 4567999999999965  45665544 55   55666 555667755543

>KOG0666|consensus

Probab=99.94  E-value=1.8e-27  Score=210.28  Aligned_cols=191  Identities=20%  Similarity=0.170  Sum_probs=147.6

Q ss_pred             CCCceEEEeceeCCCCC----cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-CCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGF----PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-PNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~----~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-~~~~~i   86 (334)
                      |+--++||+|..++++-    .+|||.++..+....+.....+|+.+++.++|||+        +.+-.+|-. +..+|+
T Consensus        34 ~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nv--------i~Lv~Vfl~~d~~v~l  105 (438)
T KOG0666|consen   34 RGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNV--------ISLVKVFLSHDKKVWL  105 (438)
T ss_pred             ccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcc--------hhHHHHHhccCceEEE
Confidence            45556999997776654    78999999887766677788899999999999999        888888776 788999


Q ss_pred             EEEccCCChhHHhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-
Q psy6542          87 IGVRQSGPKDQISR-SKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-  164 (334)
Q Consensus        87 vmEy~~g~l~~l~~-~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-  164 (334)
                      ++||.+.++-.++. +....-...+..-+..++.||+.|+.|||++=                |+||||||+|||+..+ 
T Consensus       106 ~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NW----------------vlHRDLKPaNIlvmgdg  169 (438)
T KOG0666|consen  106 LFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNW----------------VLHRDLKPANILVMGDG  169 (438)
T ss_pred             EehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhh----------------eeeccCCcceEEEeccC
Confidence            99999999544433 32222223344445567779999999999998                9999999999999877 


Q ss_pred             ---CCEEEEecccccccCCCCC-----CccccCcccccccccc--ccCCcc-eeeh--hHHHHHcCCCCCCCCCC
Q psy6542         165 ---GHVRISDLGLACDFSKKKP-----HASVESDCILHGYIKK--LGGPFV-SAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ---~~vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~--~~~~~~-~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                         |.|||+|||+||.+...-.     ....-|.+|-+||++.  .-|+++ |+|+  |+|+.|.+-.+-|.+..
T Consensus       170 perG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E  244 (438)
T KOG0666|consen  170 PERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGRE  244 (438)
T ss_pred             CccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchh
Confidence               9999999999998866532     2234588999999842  335555 4555  88888888777776654

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.94  E-value=3.8e-26  Score=205.91  Aligned_cols=235  Identities=12%  Similarity=0.030  Sum_probs=164.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|..+.+++.||+|.+.....   ....+.+|+++++.++|+||        +++++++..++.++++|||+
T Consensus        16 ~g~~~~v~~~~~~~~~~~~~~K~~~~~~~---~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   84 (263)
T cd05052          16 GGQYGEVYEGVWKKYSLTVAVKTLKEDTM---EVEEFLKEAAVMKEIKHPNL--------VQLLGVCTREPPFYIITEFM   84 (263)
T ss_pred             CcccceEEEEEEecCCceEEEEEecCCch---HHHHHHHHHHHHHhCCCCCh--------hheEEEEcCCCCcEEEEEeC
Confidence            56677999999999999999999875432   23457789999999999999        99999999999999999999


Q ss_pred             CCC-hh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .++ +. ++.....   ........+.++.|++.||.|||+++                ++||||||+||++++++.+||
T Consensus        85 ~~~~L~~~~~~~~~---~~l~~~~~~~~~~ql~~~l~~lH~~~----------------i~H~dlkp~nil~~~~~~~kl  145 (263)
T cd05052          85 TYGNLLDYLRECNR---QEVNAVVLLYMATQISSAMEYLEKKN----------------FIHRDLAARNCLVGENHLVKV  145 (263)
T ss_pred             CCCcHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHHhCC----------------EeecccCcceEEEcCCCcEEe
Confidence            887 43 3322221   11244455677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCc---cccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKKPHA---SVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~---~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||++..........   ..++..|++||...  ...+.+|+|+   ++|+++..+..||.+.......          
T Consensus       146 ~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~----------  215 (263)
T cd05052         146 ADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY----------  215 (263)
T ss_pred             CCCccccccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHH----------
Confidence            9999998765543222   12245688999742  2244567777   6677766577776443211000          


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                     ..+....      ..+.....++.+..  +...|...+|..|+ +.++++.+..
T Consensus       216 ---------------~~~~~~~------~~~~~~~~~~~~~~--li~~cl~~~p~~Rp~~~~l~~~l~~  261 (263)
T cd05052         216 ---------------ELLEKGY------RMERPEGCPPKVYE--LMRACWQWNPSDRPSFAEIHQAFET  261 (263)
T ss_pred             ---------------HHHHCCC------CCCCCCCCCHHHHH--HHHHHccCCcccCCCHHHHHHHHHh
Confidence                           0010000      00111233444555  77777888888888 7777776653

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.94  E-value=4.7e-26  Score=204.00  Aligned_cols=184  Identities=15%  Similarity=0.139  Sum_probs=141.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-CCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-PNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-~~~~~ivmEy   90 (334)
                      +++...||++.++.+++.||+|.+..........+.+.+|+++++.++|+|+        +++++.+.. ++.+|++|||
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~lv~e~   81 (257)
T cd08223          10 KGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNI--------VAYRESWEGEDGLLYIVMGF   81 (257)
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCe--------eeeeeeecCCCCEEEEEecc
Confidence            4677899999999999999999998765544455678889999999999999        999988764 4578999999


Q ss_pred             cCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++|+ + +++.......+   .....+.++.|++.||.|||+.+                ++||||||+||+++.++.++
T Consensus        82 ~~~~~l~~~l~~~~~~~l---~~~~~~~~~~~l~~~l~~lH~~~----------------i~H~di~p~nil~~~~~~~~  142 (257)
T cd08223          82 CEGGDLYHKLKEQKGKLL---PENQVVEWFVQIAMALQYLHEKH----------------ILHRDLKTQNVFLTRTNIIK  142 (257)
T ss_pred             cCCCcHHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeccCCCchhEEEecCCcEE
Confidence            9987 4 33432221122   45566777889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCcccccccccccc--CCcceeeh---hHHHHHcCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIKKLG--GPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~~--~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      |+|||++.......  .....+++.|++||+....  +..+|+|+   ++|+++. +..||.
T Consensus       143 l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~-g~~~~~  203 (257)
T cd08223         143 VGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMAT-LKHAFN  203 (257)
T ss_pred             EecccceEEecccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHc-CCCCCC
Confidence            99999998664332  2334578889999985332  44566666   5566655 445654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.94  E-value=1.5e-26  Score=211.89  Aligned_cols=188  Identities=17%  Similarity=0.145  Sum_probs=141.9

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++.+.||++.++.+|+.||||.++...........+.+|+++++.++|||+        +++++++.+++.+|+||||
T Consensus        11 ~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~   82 (294)
T PLN00009         11 GEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNI--------VRLQDVVHSEKRLYLVFEY   82 (294)
T ss_pred             cCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCE--------eeEEEEEecCCeEEEEEec
Confidence            45778899999999999999999987654433344567789999999999999        9999999999999999999


Q ss_pred             cCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-CCCEE
Q psy6542          91 QSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-HGHVR  168 (334)
Q Consensus        91 ~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-~~~vk  168 (334)
                      +++++ +.+.......   .....+..++.||+.||.|||+++                ++||||||+||+++. ++.+|
T Consensus        83 ~~~~l~~~~~~~~~~~---~~~~~~~~~~~qi~~aL~~LH~~~----------------i~H~dl~p~nill~~~~~~~k  143 (294)
T PLN00009         83 LDLDLKKHMDSSPDFA---KNPRLIKTYLYQILRGIAYCHSHR----------------VLHRDLKPQNLLIDRRTNALK  143 (294)
T ss_pred             ccccHHHHHHhCCCCC---cCHHHHHHHHHHHHHHHHHHHhCC----------------eeCCCCCcceEEEECCCCEEE
Confidence            98874 3332222111   244555667789999999999999                999999999999985 45799


Q ss_pred             EEecccccccCCCCC--CccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP--HASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||++........  ....++..|++||+...  . ...+|+|+   ++|++ +++.+||....
T Consensus       144 l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l-~tg~~pf~~~~  208 (294)
T PLN00009        144 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEM-VNQKPLFPGDS  208 (294)
T ss_pred             EcccccccccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHH-HhCCCCCCCCC
Confidence            999999986544322  22345788999997432  2 34566666   45555 45677776543

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.94  E-value=8.6e-27  Score=212.18  Aligned_cols=188  Identities=19%  Similarity=0.169  Sum_probs=144.4

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      ..++.+.||+|.++.+|+.||||.++...........+.+|++++++++||||        +++++++.+++..|+||||
T Consensus         9 ~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           9 GEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI--------VKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             cCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCC--------cchhhhcccCCcEEEEeec
Confidence            45778899999999999999999998655443344567789999999999999        9999999999999999999


Q ss_pred             cCCChh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGPKD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.+++. .+.......   .....++.++.|++.||.|||+.+                ++||||+|+||++++++.+||
T Consensus        81 ~~~~l~~~~~~~~~~~---l~~~~~~~~~~~i~~~l~~lh~~~----------------i~H~~l~p~nill~~~~~~~l  141 (284)
T cd07860          81 LHQDLKKFMDASPLSG---IPLPLIKSYLFQLLQGLAFCHSHR----------------VLHRDLKPQNLLINTEGAIKL  141 (284)
T ss_pred             cccCHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEECCCCCEEE
Confidence            987743 332222122   245566777889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC--CccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP--HASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++........  ....++..|++||+...  . ...+|+|+   ++|++++ +..||.+.+
T Consensus       142 ~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~t-g~~p~~~~~  205 (284)
T cd07860         142 ADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVT-RRALFPGDS  205 (284)
T ss_pred             eeccchhhcccCccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCCC
Confidence            99999986654322  22345778999997432  2 34566666   5566655 455765543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.94  E-value=4.2e-26  Score=207.78  Aligned_cols=189  Identities=13%  Similarity=0.043  Sum_probs=141.0

Q ss_pred             CCCceEEEecee----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSL----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++...||+|..    ..++..||+|.++..... .....+.+|+++++.++||||        +++++++..++..|+|
T Consensus        15 ~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~lv   85 (283)
T cd05090          15 ECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNP-QQWGEFQQEASLMAELHHPNI--------VCLLGVVTQEQPVCML   85 (283)
T ss_pred             ccCCcceEEEEEecCCCCCcceEEEEeccCCCCH-HHHHHHHHHHHHHhhCCCCCe--------eeEEEEEecCCceEEE
Confidence            466778999884    456788999999854432 233567889999999999999        9999999999999999


Q ss_pred             EEccCCC-hh-HHhhhhhh------------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeC
Q psy6542          88 GVRQSGP-KD-QISRSKIN------------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRD  153 (334)
Q Consensus        88 mEy~~g~-l~-~l~~~~~~------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrD  153 (334)
                      |||+.++ +. ++......            .........++.++.|++.||.|||+++                ++|||
T Consensus        86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~----------------i~H~d  149 (283)
T cd05090          86 FEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHF----------------FVHKD  149 (283)
T ss_pred             EEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcC----------------eehhc
Confidence            9999987 43 33221100            0112345556778889999999999999                99999


Q ss_pred             CCCCceeeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         154 LKPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       154 lKp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||+||++++++.+||+|||+++......    .....++..|++||... . .+..+|+|+   ++|+++..+.+||.+
T Consensus       150 lkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~  229 (283)
T cd05090         150 LAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYG  229 (283)
T ss_pred             cccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999999999998664332    12233456789999753 2 244566666   677777667777655


Q ss_pred             C
Q psy6542         225 E  225 (334)
Q Consensus       225 ~  225 (334)
                      .
T Consensus       230 ~  230 (283)
T cd05090         230 F  230 (283)
T ss_pred             C
Confidence            4

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.94  E-value=7e-26  Score=204.55  Aligned_cols=242  Identities=11%  Similarity=0.011  Sum_probs=164.3

Q ss_pred             CCCCceEEEeceeCC---CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCe----
Q psy6542          11 SRVSKWRVKPPSLKP---LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNS----   83 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~---~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~----   83 (334)
                      .+++...||.|....   ++..||||.++...........+.+|+++++.++||||        +++++++.+...    
T Consensus         8 g~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~   79 (273)
T cd05035           8 GEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNV--------MKLIGVCFEASSLQKI   79 (273)
T ss_pred             CcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCe--------eeEEeeeccCCccccC
Confidence            457788999998765   45889999998755544445568889999999999999        999998875543    


Q ss_pred             --EEEEEEccCCC-hhHHhhh-hhh-hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCc
Q psy6542          84 --HYIIGVRQSGP-KDQISRS-KIN-RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPAN  158 (334)
Q Consensus        84 --~~ivmEy~~g~-l~~l~~~-~~~-~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~N  158 (334)
                        .+++|||+.++ +..+... ... ..........+.++.|++.||.|||+++                ++||||||+|
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~----------------i~H~dlkp~N  143 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRN----------------FIHRDLAARN  143 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCC----------------eeccccchhe
Confidence              79999999988 4333222 111 1112355566777889999999999999                9999999999


Q ss_pred             eeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCC
Q psy6542         159 ILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQS  229 (334)
Q Consensus       159 iLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~  229 (334)
                      |++++++.+||+|||+++.......    .....+..|++||+.. .. ...+|+|+   ++|+++..+.+||.+.....
T Consensus       144 il~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~  223 (273)
T cd05035         144 CMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHE  223 (273)
T ss_pred             EEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence            9999999999999999986644321    1122345678888742 33 34566666   67777776777765433110


Q ss_pred             cccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHH
Q psy6542         230 KPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMA  308 (334)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~  308 (334)
                                               +...+....      ........+..+.+  +...+...+|..|+ +.++++.+.
T Consensus       224 -------------------------~~~~~~~~~------~~~~~~~~~~~~~~--li~~~l~~~p~~Rp~~~e~~~~l~  270 (273)
T cd05035         224 -------------------------IYDYLRHGN------RLKQPEDCLDELYD--LMYSCWRADPKDRPTFTKLREVLE  270 (273)
T ss_pred             -------------------------HHHHHHcCC------CCCCCcCCCHHHHH--HHHHHcCCChhhCcCHHHHHHHHH
Confidence                                     001110000      00011223333444  77778888888888 777777765


Q ss_pred             H
Q psy6542         309 R  309 (334)
Q Consensus       309 ~  309 (334)
                      .
T Consensus       271 ~  271 (273)
T cd05035         271 N  271 (273)
T ss_pred             h
Confidence            4

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.94  E-value=2.1e-26  Score=211.94  Aligned_cols=187  Identities=17%  Similarity=0.139  Sum_probs=141.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC--------e
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN--------S   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~--------~   83 (334)
                      +++.+.||+|.+..+++.||||.+............+.+|++++++++||||        +++++++....        .
T Consensus        22 ~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~~~   93 (310)
T cd07865          22 QGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENV--------VNLIEICRTKATPYNRYKGS   93 (310)
T ss_pred             cCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCc--------cceEEEEecccccccCCCce
Confidence            4677899999999999999999997655433334456679999999999999        99999877543        4


Q ss_pred             EEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          84 HYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        84 ~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      .|+||||+.+++..........+   ....++.++.|++.||.|||+++                ++|+||||+||+++.
T Consensus        94 ~~lv~e~~~~~l~~~l~~~~~~~---~~~~~~~i~~qi~~al~~lH~~~----------------i~H~dl~p~nil~~~  154 (310)
T cd07865          94 FYLVFEFCEHDLAGLLSNKNVKF---TLSEIKKVMKMLLNGLYYIHRNK----------------ILHRDMKAANILITK  154 (310)
T ss_pred             EEEEEcCCCcCHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCCHHHEEECC
Confidence            69999999988544333322122   45556677889999999999999                999999999999999


Q ss_pred             CCCEEEEecccccccCCCCC------CccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         164 HGHVRISDLGLACDFSKKKP------HASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~~------~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ++.+||+|||++........      ....++..|++||+...   ..+.+|+|+   ++|+++ ++.+||.+.+
T Consensus       155 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~-t~~~~~~~~~  228 (310)
T cd07865         155 DGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMW-TRSPIMQGNT  228 (310)
T ss_pred             CCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHH-hCCCCCCCCC
Confidence            99999999999986643321      12345778999997432   245677777   556655 5667776554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.94  E-value=3.6e-26  Score=208.95  Aligned_cols=248  Identities=11%  Similarity=0.023  Sum_probs=169.0

Q ss_pred             CCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++...||+|.++     ..+..||+|.+...... .....+.+|+.+++.++||||        +++++++.+++..|+
T Consensus        16 ~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~l   86 (288)
T cd05061          16 QGSFGMVYEGNARDIIKGEAETRVAVKTVNESASL-RERIEFLNEASVMKGFTCHHV--------VRLLGVVSKGQPTLV   86 (288)
T ss_pred             CCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCH-HHHHHHHHHHHHHHhCCCCCe--------eeEEEEEcCCCCcEE
Confidence            4666789998755     23568999998754432 233457789999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhh------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          87 IGVRQSGP-KDQISRSKIN------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                      ||||+.|+ +.........      .........+..++.|++.||.|||+++                |+||||||+||
T Consensus        87 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~----------------i~H~dikp~ni  150 (288)
T cd05061          87 VMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKK----------------FVHRDLAARNC  150 (288)
T ss_pred             EEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------CcCCCCChheE
Confidence            99999988 4333332110      0122234456677889999999999999                99999999999


Q ss_pred             eeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCc
Q psy6542         160 LLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSK  230 (334)
Q Consensus       160 Ll~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~  230 (334)
                      ++++++.++|+|||+++.......    ....++..|++||...  ..+..+|+|+   ++|+++..+..||.+....  
T Consensus       151 li~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~--  228 (288)
T cd05061         151 MVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNE--  228 (288)
T ss_pred             EEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHH--
Confidence            999999999999999986543321    1123356788999743  2355677777   6677776667776443210  


Q ss_pred             ccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         231 PELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                            + +........      ..+.....++.+.+  +..++...+|..|+ +.++++.+.+
T Consensus       229 ----------------------~-~~~~~~~~~------~~~~~~~~~~~~~~--li~~~l~~~p~~Rps~~~ll~~l~~  277 (288)
T cd05061         229 ----------------------Q-VLKFVMDGG------YLDQPDNCPERVTD--LMRMCWQFNPKMRPTFLEIVNLLKD  277 (288)
T ss_pred             ----------------------H-HHHHHHcCC------CCCCCCCCCHHHHH--HHHHHcCCChhHCcCHHHHHHHHHh
Confidence                                  0 000000000      00001122334455  88899999999999 8888888888


Q ss_pred             HhCCCCCC
Q psy6542         310 KAGKIYGT  317 (334)
Q Consensus       310 ~~~~~~~~  317 (334)
                      ....-|..
T Consensus       278 ~~~~~~~~  285 (288)
T cd05061         278 DLHPSFPE  285 (288)
T ss_pred             hcCCCCCC
Confidence            76555544

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.94  E-value=1.6e-26  Score=213.37  Aligned_cols=188  Identities=16%  Similarity=0.143  Sum_probs=141.6

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHYIIG   88 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~ivm   88 (334)
                      .+++.+.||+|.++.+|+.||||.++...........+.+|+.++++++|+|+        +++++++.+.  +.+|+||
T Consensus        16 g~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~lv~   87 (309)
T cd07845          16 GEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNI--------VELKEVVVGKHLDSIFLVM   87 (309)
T ss_pred             eecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCC--------cceEEEEecCCCCeEEEEE
Confidence            46778899999999999999999998654433333345679999999999999        9999998754  5689999


Q ss_pred             EccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          89 VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        89 Ey~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||+++++..+.......+   .....+.++.|++.||.|||+.+                ++||||||+||++++++.+|
T Consensus        88 e~~~~~l~~~l~~~~~~l---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dl~p~nil~~~~~~~k  148 (309)
T cd07845          88 EYCEQDLASLLDNMPTPF---SESQVKCLMLQLLRGLQYLHENF----------------IIHRDLKVSNLLLTDKGCLK  148 (309)
T ss_pred             ecCCCCHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEECCCCCEE
Confidence            999988533333221222   44556677889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC--CccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP--HASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||++........  ....++..|++||+..  .. ...+|+|+   ++|+++ .+.+||.+.+
T Consensus       149 L~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~-~g~~~f~~~~  213 (309)
T cd07845         149 IADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELL-AHKPLLPGKS  213 (309)
T ss_pred             ECccceeeecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHH-hCCCCCCCCC
Confidence            999999987654321  2223467799999753  22 44566666   555554 4666775544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.94  E-value=5.6e-26  Score=206.24  Aligned_cols=189  Identities=12%  Similarity=0.028  Sum_probs=141.1

Q ss_pred             CCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++...||+|.+.     .++..||||.++..... ...+.+.+|+++++.++|+||        +++++++..+...|+
T Consensus        15 ~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~l   85 (280)
T cd05049          15 EGAFGKVFLGECYHLEPENDKELVAVKTLKETASN-DARKDFEREAELLTNFQHENI--------VKFYGVCTEGDPPIM   85 (280)
T ss_pred             ccCCceEeeeeeccccCcCCcceEEEEeecccCCH-HHHHHHHHHHHHHHhcCCCCc--------hheeeEEecCCCeEE
Confidence            4677799999875     44688999998765432 245678899999999999999        999999999999999


Q ss_pred             EEEccCCC-h-hHHhhhhh---------hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCC
Q psy6542          87 IGVRQSGP-K-DQISRSKI---------NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK  155 (334)
Q Consensus        87 vmEy~~g~-l-~~l~~~~~---------~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlK  155 (334)
                      ||||+.|+ + +++.....         ..........+..++.|++.||.|||+++                ++|||||
T Consensus        86 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~----------------i~h~dlk  149 (280)
T cd05049          86 VFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQH----------------FVHRDLA  149 (280)
T ss_pred             EEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC----------------eeccccc
Confidence            99999988 4 33322210         01112345556777889999999999999                9999999


Q ss_pred             CCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         156 PANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       156 p~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |+||+++.++.+||+|||+++.......    ....++..|++||+.. .. ++.+|+|+   ++|+++..+..||...
T Consensus       150 p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~  228 (280)
T cd05049         150 TRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGL  228 (280)
T ss_pred             cceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999986533321    2223467799999743 22 44566666   6677766566676543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.94  E-value=5.9e-26  Score=207.58  Aligned_cols=189  Identities=14%  Similarity=0.082  Sum_probs=140.6

Q ss_pred             CCCceEEEecee-----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSL-----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~-----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++..+||++.+     ..++..||+|.+....  ....+.+.+|++++++++|||+        +++++++..++.+|+
T Consensus        15 ~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~l   84 (288)
T cd05093          15 EGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS--DNARKDFHREAELLTNLQHEHI--------VKFYGVCVEGDPLIM   84 (288)
T ss_pred             CcCCeeEEeeEeccCCCCCcceEEEEEecCCcC--HHHHHHHHHHHHHHHhCCCCCc--------ceEEEEEecCCccEE
Confidence            566778888875     3456779999987543  2345568889999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhh---------hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKI---------NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKP  156 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~---------~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp  156 (334)
                      ||||+.++ +..+.....         ...........+.++.|++.||.|||+++                ++||||||
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~----------------i~H~dlkp  148 (288)
T cd05093          85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQH----------------FVHRDLAT  148 (288)
T ss_pred             EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------eeecccCc
Confidence            99999988 433322211         01112355667778889999999999999                99999999


Q ss_pred             CceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         157 ANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       157 ~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +||++++++.+||+|||+++.......    ....++..|++||+.. .. +..+|+|+   ++|+++..+.+||....
T Consensus       149 ~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~  227 (288)
T cd05093         149 RNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS  227 (288)
T ss_pred             ceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            999999999999999999986543321    1223456789999753 22 44577777   66777665777765443

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.94  E-value=3.7e-26  Score=210.67  Aligned_cols=246  Identities=13%  Similarity=0.047  Sum_probs=165.4

Q ss_pred             CCCCceEEEeceeCCCCCcE--EEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPI--QIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~v--AIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .+++...||+|.++.++..+  |+|.++... .......+.+|++++.++ +|+||        +++++++.+++.+|+|
T Consensus        16 g~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~Ei~~l~~l~~h~~i--------v~~~~~~~~~~~~~lv   86 (303)
T cd05088          16 GEGNFGQVLKARIKKDGLRMDAAIKRMKEYA-SKDDHRDFAGELEVLCKLGHHPNI--------INLLGACEHRGYLYLA   86 (303)
T ss_pred             cCCCCceEEEEEEccCCceeeEEEEEecccC-CHHHHHHHHHHHHHHHHhcCCCCc--------ceEEEEECCCCCceEE
Confidence            35677899999998888654  777665432 233445677899999999 89999        9999999999999999


Q ss_pred             EEccCCC-h-hHHhhhhhh-----------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCC
Q psy6542          88 GVRQSGP-K-DQISRSKIN-----------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDL  154 (334)
Q Consensus        88 mEy~~g~-l-~~l~~~~~~-----------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDl  154 (334)
                      |||++|+ + +++......           .........++.++.|++.||.|||+++                ++||||
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g----------------i~H~dl  150 (303)
T cd05088          87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ----------------FIHRDL  150 (303)
T ss_pred             EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCC----------------cccccc
Confidence            9999887 4 333222110           0012345566778889999999999999                999999


Q ss_pred             CCCceeeCCCCCEEEEecccccccCCCCCC-ccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCC
Q psy6542         155 KPANILLDEHGHVRISDLGLACDFSKKKPH-ASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       155 Kp~NiLl~~~~~vkl~DFGla~~~~~~~~~-~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~  228 (334)
                      ||+|||+++++.+||+|||++......... ...++..|++||...  ..++.+|+|+   ++|+++..+.+||.+.+..
T Consensus       151 kp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~  230 (303)
T cd05088         151 AARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA  230 (303)
T ss_pred             chheEEecCCCcEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChH
Confidence            999999999999999999999743222111 112345688898742  2345677777   6777776577777544321


Q ss_pred             CcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHH
Q psy6542         229 SKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSM  307 (334)
Q Consensus       229 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l  307 (334)
                      ...+                         .+....  +..    .....++.+.+  +...|...+|..|+ +.+++..+
T Consensus       231 ~~~~-------------------------~~~~~~--~~~----~~~~~~~~~~~--li~~~l~~~p~~Rp~~~~il~~l  277 (303)
T cd05088         231 ELYE-------------------------KLPQGY--RLE----KPLNCDDEVYD--LMRQCWREKPYERPSFAQILVSL  277 (303)
T ss_pred             HHHH-------------------------HHhcCC--cCC----CCCCCCHHHHH--HHHHHcCCChhhCcCHHHHHHHH
Confidence            1000                         000000  000    01122333444  77778888888888 88888877


Q ss_pred             HHHhCCC
Q psy6542         308 ARKAGKI  314 (334)
Q Consensus       308 ~~~~~~~  314 (334)
                      .+....+
T Consensus       278 ~~~~~~~  284 (303)
T cd05088         278 NRMLEER  284 (303)
T ss_pred             HHHHHhh
Confidence            6654433

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.94  E-value=6e-26  Score=207.67  Aligned_cols=242  Identities=13%  Similarity=0.069  Sum_probs=166.0

Q ss_pred             CCCCceEEEeceeCCCC-----CcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeE
Q psy6542          11 SRVSKWRVKPPSLKPLG-----FPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~-----~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      .+++.+.||++..+..+     ..||+|.+.....+. ....+.+|+++++++ +|+||        +++++++.+++.+
T Consensus        21 g~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~-~~~~~~~E~~~l~~l~~h~~i--------~~~~~~~~~~~~~   91 (293)
T cd05053          21 GEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEK-DLSDLVSEMEMMKMIGKHKNI--------INLLGVCTQEGPL   91 (293)
T ss_pred             cccccccEEEEEEecCCCCCCceeEEEEEccCCCCHH-HHHHHHHHHHHHHhhcCCCCe--------eeEEEEEcCCCCe
Confidence            45777899999876543     789999998654433 334677899999999 89999        9999999999999


Q ss_pred             EEEEEccCCC-hhHHhhhhh------------hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEe
Q psy6542          85 YIIGVRQSGP-KDQISRSKI------------NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHF  151 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~------------~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiH  151 (334)
                      |++|||+.++ +..+.....            ..........++.++.|++.||.|||+.+                |+|
T Consensus        92 ~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~----------------ivH  155 (293)
T cd05053          92 YVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKK----------------CIH  155 (293)
T ss_pred             EEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCC----------------ccc
Confidence            9999999888 433332210            11122345666778889999999999999                999


Q ss_pred             eCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCccccccccc-cc-cCCcceeeh---hHHHHHcCCCCCC
Q psy6542         152 RDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIK-KL-GGPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       152 rDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~-~~-~~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                      |||||+||++++++.+||+|||+++.......    ....++..|++||+. .. .+..+|+|+   ++|+++..+..||
T Consensus       156 ~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~  235 (293)
T cd05053         156 RDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPY  235 (293)
T ss_pred             cccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCC
Confidence            99999999999999999999999987654322    112234678999974 22 344667777   6667766566666


Q ss_pred             CCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hH
Q psy6542         223 HPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQ  301 (334)
Q Consensus       223 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~  301 (334)
                      .+.......                         ..+.....  ..    .....+..+.+  +...|...+|..|+ +.
T Consensus       236 ~~~~~~~~~-------------------------~~~~~~~~--~~----~~~~~~~~~~~--li~~~l~~~p~~Rps~~  282 (293)
T cd05053         236 PGIPVEELF-------------------------KLLKEGYR--ME----KPQNCTQELYH--LMRDCWHEVPSQRPTFK  282 (293)
T ss_pred             CCCCHHHHH-------------------------HHHHcCCc--CC----CCCCCCHHHHH--HHHHHcccCcccCcCHH
Confidence            443211000                         00100000  00    01122233344  77778888888888 89


Q ss_pred             HHHHHHHHH
Q psy6542         302 ELLGSMARK  310 (334)
Q Consensus       302 ~lL~~l~~~  310 (334)
                      ++++.+...
T Consensus       283 eil~~l~~~  291 (293)
T cd05053         283 QLVEDLDRM  291 (293)
T ss_pred             HHHHHHHHh
Confidence            999888753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=1.7e-26  Score=227.29  Aligned_cols=190  Identities=17%  Similarity=0.104  Sum_probs=135.9

Q ss_pred             CCCceEEEeceeCCCC-CcEEEEEee---------------CCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEE
Q psy6542          12 RVSKWRVKPPSLKPLG-FPIQIGMLR---------------HRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLY   75 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~-~~vAIK~l~---------------~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~   75 (334)
                      +|+.+.||+|..+... ..+++|.+.               ...........+.+|+++++.++||||        ++++
T Consensus       158 ~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI--------v~l~  229 (501)
T PHA03210        158 AGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI--------LKIE  229 (501)
T ss_pred             CCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc--------CcEe
Confidence            6788899998765432 222333111               111122344567889999999999999        9999


Q ss_pred             EEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCC
Q psy6542          76 KVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDL  154 (334)
Q Consensus        76 ~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDl  154 (334)
                      +++.+++..|+|||++.++ ++++..................++.||+.||.|||+++                |+||||
T Consensus       230 ~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~g----------------IiHrDL  293 (501)
T PHA03210        230 EILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKK----------------LIHRDI  293 (501)
T ss_pred             EEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCC----------------eecCCC
Confidence            9999999999999999888 44443322211111123345567889999999999999                999999


Q ss_pred             CCCceeeCCCCCEEEEecccccccCCCCC---CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCC
Q psy6542         155 KPANILLDEHGHVRISDLGLACDFSKKKP---HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       155 Kp~NiLl~~~~~vkl~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ||+|||++.++.+||+|||+++.+.....   ....||..|++||+.. ..++ .+|+|+   ++|+++.++.+|+...
T Consensus       294 KP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~  372 (501)
T PHA03210        294 KLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDG  372 (501)
T ss_pred             CHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCC
Confidence            99999999999999999999987755432   2356899999999853 3344 455566   7788877766665443

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.94  E-value=5.1e-26  Score=205.07  Aligned_cols=188  Identities=19%  Similarity=0.179  Sum_probs=144.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||++.++.+|..||||.+..... +......+.+|+.+++.++|+||        +++++++..++.++++|||
T Consensus        12 ~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i--------~~~~~~~~~~~~~~~v~e~   83 (267)
T cd08229          12 RGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNV--------IKYYASFIEDNELNIVLEL   83 (267)
T ss_pred             ccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCch--------hhhhheeEeCCeEEEEEEe
Confidence            46677899999999999999999876443 33345577889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +..+................+.++.|++.||.|||+++                ++|+||||+||+++.++.++|
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~----------------i~H~dl~p~nili~~~~~~~l  147 (267)
T cd08229          84 ADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRR----------------VMHRDIKPANVFITATGVVKL  147 (267)
T ss_pred             cCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEEcCCCCEEE
Confidence            9987 54433321111122355566778889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC--CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP--HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       170 ~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|||++........  ....++..|++||... .. ...+|.|+   ++|++++ +..||.+
T Consensus       148 ~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~  208 (267)
T cd08229         148 GDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAA-LQSPFYG  208 (267)
T ss_pred             CcchhhhccccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHh-CCCCccc
Confidence            99999986654432  3346788899999742 23 33556666   5566654 5556644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>KOG0596|consensus

Probab=99.94  E-value=8.1e-27  Score=219.36  Aligned_cols=229  Identities=16%  Similarity=0.125  Sum_probs=168.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|++=+||++..-. .+.||+|.+.....+......+.+|+.+|.+|+ |.+|        |++||+-..++.+||||||
T Consensus       371 ~GGSSkV~kV~~s~-~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~I--------IqL~DYEv~d~~lYmvmE~  441 (677)
T KOG0596|consen  371 SGGSSKVFKVLNSD-KQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKI--------IQLYDYEVTDGYLYMVMEC  441 (677)
T ss_pred             CCCcceeeeeecCC-CcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceE--------EEEeeeeccCceEEEEeec
Confidence            57777999998766 667888888877777778889999999999997 7788        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      -+.++..++..+.........+++|.   |++.++.++|.+|                |||-||||+|+|+-+ |.+||+
T Consensus       442 Gd~DL~kiL~k~~~~~~~~~lk~ywk---qML~aV~~IH~~g----------------IVHSDLKPANFLlVk-G~LKLI  501 (677)
T KOG0596|consen  442 GDIDLNKILKKKKSIDPDWFLKFYWK---QMLLAVKTIHQHG----------------IVHSDLKPANFLLVK-GRLKLI  501 (677)
T ss_pred             ccccHHHHHHhccCCCchHHHHHHHH---HHHHHHHHHHHhc----------------eeecCCCcccEEEEe-eeEEee
Confidence            99998887776554444445555665   9999999999999                999999999999976 789999


Q ss_pred             ecccccccCCCCC----CccccCccccccccc-----c--------ccCCcceeeh--hHHHHHcCCCCCCCCCCCCCc-
Q psy6542         171 DLGLACDFSKKKP----HASVESDCILHGYIK-----K--------LGGPFVSAWQ--TRYAKLFPNRLELHPESGQSK-  230 (334)
Q Consensus       171 DFGla~~~~~~~~----~~~~~t~~~~~~~v~-----~--------~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~-  230 (334)
                      |||+|..+..+.+    .+.+||..||+||..     .        ..++++|+|+  |+.+.|..+.+||..-..... 
T Consensus       502 DFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aK  581 (677)
T KOG0596|consen  502 DFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAK  581 (677)
T ss_pred             eechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHH
Confidence            9999998877764    356899999999962     1        1256899999  777777778888744321111 


Q ss_pred             ccchhcccc-cccccccccHh-HHHHHHHhhccCchhhcCCC
Q psy6542         231 PELIFMDQI-EEVSQDLITVK-GEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       231 ~~~i~~~~~-~~~~~~~~~~~-~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...|+.-.. -+++ +....+ .-.....++.+||.+|.+++
T Consensus       582 l~aI~~P~~~Iefp-~~~~~~~li~~mK~CL~rdPkkR~si~  622 (677)
T KOG0596|consen  582 LHAITDPNHEIEFP-DIPENDELIDVMKCCLARDPKKRWSIP  622 (677)
T ss_pred             HHhhcCCCcccccc-CCCCchHHHHHHHHHHhcCcccCCCcH
Confidence            111111100 0011 111111 33445556677888888876

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.94  E-value=1e-25  Score=203.22  Aligned_cols=182  Identities=14%  Similarity=0.118  Sum_probs=141.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..+++.||+|.++.....  ....+.+|+.+++.++||||        +++++++..++.+|+||||+
T Consensus        19 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~e~~~~~~l~h~~i--------i~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645          19 SGTYGDVYKARNVNTGELAAIKVIKLEPGE--DFAVVQQEIIMMKDCKHSNI--------VAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEEEecCchh--HHHHHHHHHHHHHhCCCCCe--------eeEEEEEEeCCEEEEEEecc
Confidence            577789999999999999999999865432  22356789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +++ +..+.... ..+   .....+.++.|++.||.|||+.+                ++||||||+||+++.++.++|+
T Consensus        89 ~~~~L~~~~~~~-~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dlkp~nili~~~~~~~l~  148 (267)
T cd06645          89 GGGSLQDIYHVT-GPL---SESQIAYVSRETLQGLYYLHSKG----------------KMHRDIKGANILLTDNGHVKLA  148 (267)
T ss_pred             CCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEECCCCCEEEC
Confidence            987 54433221 123   45556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc----c-cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK----L-GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~----~-~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++.......  .....|+..|++||+..    . ....+|.|+   ++|++ +.+..||..
T Consensus       149 dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l-~~~~~p~~~  211 (267)
T cd06645         149 DFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIEL-AELQPPMFD  211 (267)
T ss_pred             cceeeeEccCcccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHH-hcCCCCccc
Confidence            999997664432  23346788999999742    2 234566666   45554 555556543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.94  E-value=1.1e-25  Score=202.54  Aligned_cols=188  Identities=16%  Similarity=0.134  Sum_probs=143.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++...||+|.+..+|+.||+|.++.... +....+.+.+|++++++++|+|+        +++++++.+++..++||||
T Consensus        12 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i--------~~~~~~~~~~~~~~lv~e~   83 (267)
T cd08224          12 KGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNV--------IKYLASFIENNELNIVLEL   83 (267)
T ss_pred             cCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCe--------eeeeeeeecCCeEEEEEec
Confidence            56778999999999999999999986443 33345678889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+................+.++.|++.||.|||+.+                ++||||||+||+++.++.++|
T Consensus        84 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~----------------i~h~dl~p~nil~~~~~~~~l  147 (267)
T cd08224          84 ADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKR----------------IMHRDIKPANVFITATGVVKL  147 (267)
T ss_pred             CCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCC----------------EecCCcChhhEEECCCCcEEE
Confidence            9987 54333321111112245566788889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|||++.......  .....++..|++||+.. ..++ .+|+|+   ++|+++. +..||..
T Consensus       148 ~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~  208 (267)
T cd08224         148 GDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAA-LQSPFYG  208 (267)
T ss_pred             eccceeeeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHH-CCCCccc
Confidence            9999998664432  23345778889999743 3333 556666   5566655 4556544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.94  E-value=8.7e-26  Score=204.34  Aligned_cols=188  Identities=10%  Similarity=-0.026  Sum_probs=136.3

Q ss_pred             CCCceEEEeceeCCC--CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPL--GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~--~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++...||++.....  ...+++|.++..... ...+.+.+|+.+++.++||||        +++++.+.+...+|+|||
T Consensus         5 ~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~e~~~~~~l~h~~i--------v~~~~~~~~~~~~~lv~e   75 (268)
T cd05086           5 NGWFGKVLLSEIYTDTGVARVVVKELKANASS-KEQNEFLQQGDPYRILQHPNI--------LQCLGQCVEAIPYLLVFE   75 (268)
T ss_pred             CCcCceEEEEEEEcCCCcceEEEEEecCCCCh-HHHHHHHHHHHHHhccCCcch--------hheEEEecCCCccEEEEe
Confidence            467789999875432  334667776654332 235578889999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++++ +..................+..++.|++.||.|||+.+                ++||||||+|||++.++.++
T Consensus        76 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~----------------i~H~dikp~nil~~~~~~~~  139 (268)
T cd05086          76 YCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHN----------------FLHSDLALRNCFLTSDLTVK  139 (268)
T ss_pred             cCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCccceEEEcCCccEE
Confidence            99987 43332322111222344556677889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCC----CCCccccCccccccccccc--------c-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         169 ISDLGLACDFSKK----KPHASVESDCILHGYIKKL--------G-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       169 l~DFGla~~~~~~----~~~~~~~t~~~~~~~v~~~--------~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |+|||++......    ......++..|++||+...        . +..+|+|+   ++|+++.++..||..
T Consensus       140 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~  211 (268)
T cd05086         140 VGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSH  211 (268)
T ss_pred             ecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCC
Confidence            9999998643221    1223456778999997421        1 23455566   778887777777644

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.94  E-value=6.8e-26  Score=203.21  Aligned_cols=189  Identities=19%  Similarity=0.173  Sum_probs=145.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee--cCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS--EPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~--~~~~~~ivmE   89 (334)
                      .++.+.||+|.+..+|+.||+|.+..........+.+..|+++++.++|+|+        +++++.+.  .+..+|++||
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~~~~~e   81 (265)
T cd08217          10 KGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNI--------VRYYDRIIDRSNQTLYIVME   81 (265)
T ss_pred             cCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCcc--------ceeeeeeecCCCCEEEEEeh
Confidence            4678899999999999999999998765555556678889999999999999        99998776  3467899999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-----cCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCH-----SALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH-----~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      |++++ +..+...............++.++.|++.||.|||     +.+                ++|+||||+||++++
T Consensus        82 ~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~----------------i~h~dl~p~nili~~  145 (265)
T cd08217          82 YCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNT----------------VLHRDLKPANIFLDA  145 (265)
T ss_pred             hccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCc----------------ceecCCCHHHEEEec
Confidence            99887 54433332212223355667788889999999999     777                999999999999999


Q ss_pred             CCCEEEEecccccccCCCC--CCccccCcccccccccccc--CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         164 HGHVRISDLGLACDFSKKK--PHASVESDCILHGYIKKLG--GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~~--~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ++.+||+|||++.......  .....++..|++||+....  +..+|.|+   ++|+++ ++..||...
T Consensus       146 ~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~-~g~~p~~~~  213 (265)
T cd08217         146 NNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELC-ALSPPFTAR  213 (265)
T ss_pred             CCCEEEecccccccccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHH-HCCCcccCc
Confidence            9999999999998776544  2344678889999984322  34566676   555654 556666443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.94  E-value=8.5e-26  Score=205.27  Aligned_cols=187  Identities=19%  Similarity=0.215  Sum_probs=143.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++...||+|.+..+|+.||+|++.+... .......+..|+++++.++|||+        +++++++..++.+|+||||
T Consensus         3 ~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~lv~e~   74 (277)
T cd05577           3 KGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFI--------VSLAYAFETKDDLCLVMTL   74 (277)
T ss_pred             CCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCE--------eeeeeEEecCCeEEEEEec
Confidence            45677999999999999999999986543 22234456779999999999999        9999999999999999999


Q ss_pred             cCCC-hh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++|+ +. .+.......+   ....++.++.|++.||.|||+.+                ++||||+|+||++++++.++
T Consensus        75 ~~~~~L~~~l~~~~~~~~---~~~~~~~~~~ql~~~l~~lH~~~----------------i~H~di~p~Nil~~~~~~~~  135 (277)
T cd05577          75 MNGGDLKYHIYNVGEPGF---PEARAIFYAAQIICGLEHLHQRR----------------IVYRDLKPENVLLDDHGNVR  135 (277)
T ss_pred             CCCCcHHHHHHHcCcCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCHHHEEECCCCCEE
Confidence            9987 43 3322221122   44555667789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC-CCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK-PHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||++....... .....++..|++||+..  .....+|+|+   ++|+++ ++..||....
T Consensus       136 l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~-~g~~p~~~~~  198 (277)
T cd05577         136 ISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMI-AGRSPFRQRK  198 (277)
T ss_pred             EccCcchhhhccCCccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHh-hCCCCCCCCc
Confidence            99999998654432 23345677899999843  2244567777   555654 5677775544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.94  E-value=5.3e-26  Score=205.26  Aligned_cols=186  Identities=13%  Similarity=0.042  Sum_probs=140.0

Q ss_pred             CCCCceEEEeceeCCCCC---cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGF---PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~---~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .+++.+.||+|..+.++.   .||||.++..... ...+.+..|+++++.++|+|+        +++++++.+.+..|+|
T Consensus        14 g~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv   84 (268)
T cd05063          14 GAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTE-KQRQDFLSEASIMGQFSHHNI--------IRLEGVVTKFKPAMII   84 (268)
T ss_pred             cCCCCccEEEEEEecCCCCceEEEEEeccccCCH-HHHHHHHHHHHHHhcCCCCCe--------eEEEEEEccCCCcEEE
Confidence            456778999999887665   6999998765432 234567789999999999999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||++++ ++.........+   .....+.++.|++.||.|||+.+                ++||||||+||++++++.
T Consensus        85 ~e~~~~~~L~~~~~~~~~~~---~~~~~~~~~~~l~~al~~lH~~~----------------i~H~dlkp~Nili~~~~~  145 (268)
T cd05063          85 TEYMENGALDKYLRDHDGEF---SSYQLVGMLRGIAAGMKYLSDMN----------------YVHRDLAARNILVNSNLE  145 (268)
T ss_pred             EEcCCCCCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccccchhhEEEcCCCc
Confidence            9999988 544333221222   44455677789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCCCcc-----ccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKPHAS-----VESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~~~-----~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +||+|||++...........     ..+..|++||+..  .....+|+|+   ++|+++..+..||..
T Consensus       146 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~  213 (268)
T cd05063         146 CKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWD  213 (268)
T ss_pred             EEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCc
Confidence            99999999986654332211     1234688999743  2244566666   667777667777644

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.94  E-value=7.5e-26  Score=209.33  Aligned_cols=186  Identities=18%  Similarity=0.133  Sum_probs=136.9

Q ss_pred             CCCceEEEeceeCC--CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee--cCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKP--LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS--EPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~--~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~--~~~~~~iv   87 (334)
                      .++.+.||+|..+.  ++..||+|.+.....    ...+.+|+++++.++||||        +++++++.  .+..+|+|
T Consensus        11 ~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~----~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~~~lv   78 (317)
T cd07867          11 RGTYGHVYKAKRKDGKDEKEYALKQIEGTGI----SMSACREIALLRELKHPNV--------IALQKVFLSHSDRKVWLL   78 (317)
T ss_pred             cCCCeeEEEEEecCCCccceEEEEEecCCCC----cHHHHHHHHHHHhCCCCCe--------eeEEEEEeccCCCeEEEE
Confidence            46778999999664  678999999875433    2345679999999999999        99999885  45678999


Q ss_pred             EEccCCCh-hHHhhhhh----hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee-
Q psy6542          88 GVRQSGPK-DQISRSKI----NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL-  161 (334)
Q Consensus        88 mEy~~g~l-~~l~~~~~----~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl-  161 (334)
                      |||+.+++ +.+.....    ..........+..++.|++.||.|||+.+                |+||||||+|||+ 
T Consensus        79 ~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~----------------ivH~Dlkp~Nil~~  142 (317)
T cd07867          79 FDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANW----------------VLHRDLKPANILVM  142 (317)
T ss_pred             EeeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCC----------------EEcCCCCHHHEEEc
Confidence            99999984 33322111    01112345556677889999999999999                9999999999999 


Q ss_pred             ---CCCCCEEEEecccccccCCCC-----CCccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         162 ---DEHGHVRISDLGLACDFSKKK-----PHASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       162 ---~~~~~vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                         +.++.+||+|||+++......     .....+|+.|++||+...  . ...+|+|+   ++|+++ ++.+||....
T Consensus       143 ~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~-tg~~~f~~~~  220 (317)
T cd07867         143 GEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELL-TSEPIFHCRQ  220 (317)
T ss_pred             cCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHH-hCCCCccccc
Confidence               556789999999998765432     123457889999998532  2 34566676   555655 4566776544

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.94  E-value=1.5e-25  Score=204.07  Aligned_cols=185  Identities=14%  Similarity=0.099  Sum_probs=141.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||++.+..++..+|+|.+.....  ...+.+.+|+++++.++|||+        +++++++..++..|+||||+
T Consensus        15 ~g~~g~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~h~~i--------i~~~~~~~~~~~~~~v~e~~   84 (282)
T cd06643          15 DGAFGKVYKAQNKETGVLAAAKVIDTKSE--EELEDYMVEIDILASCDHPNI--------VKLLDAFYYENNLWILIEFC   84 (282)
T ss_pred             cCCCeEEEEEEECCCCeEEEEEEeCCCCH--HHHHHHHHHHHHHHHCCCCCe--------eeEEEEEeeCCEEEEEEEec
Confidence            46678999999999999999999975443  234567789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ ++.+.......+   .......++.|++.||.|||+.+                ++||||||+||+++.++.+||+
T Consensus        85 ~~~~l~~~~~~~~~~l---~~~~~~~~~~qi~~~L~~LH~~~----------------i~H~dlkp~nili~~~~~~kl~  145 (282)
T cd06643          85 AGGAVDAVMLELERPL---TEPQIRVVCKQTLEALNYLHENK----------------IIHRDLKAGNILFTLDGDIKLA  145 (282)
T ss_pred             CCCcHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeecCCCcccEEEccCCCEEEc
Confidence            988 443322221222   44556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc------cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK------LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~------~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||++.......  .....++..|++||+..      .. ...+|+|+   ++|++ +.+.+||...+
T Consensus       146 dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el-~~g~~p~~~~~  212 (282)
T cd06643         146 DFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM-AQIEPPHHELN  212 (282)
T ss_pred             cccccccccccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHH-ccCCCCccccC
Confidence            999997654332  23356788999999742      11 23566666   45554 55666765543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.94  E-value=1.2e-25  Score=201.45  Aligned_cols=185  Identities=14%  Similarity=0.103  Sum_probs=143.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||++.+..+++.|++|.+..........+.+.+|++++++++|+||        +++++++.+.+.++++|||+
T Consensus        10 ~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i--------~~~~~~~~~~~~~~~~~e~~   81 (256)
T cd08221          10 KGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNI--------IAYYNHFMDDNTLLIEMEYA   81 (256)
T ss_pred             ccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCe--------eEEEeEEecCCeEEEEEEec
Confidence            3456689999999999999999998766544455677889999999999999        99999999999999999999


Q ss_pred             CCC-hh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|+ +. .+.......+   .......++.|++.||.|||+.+                ++|+||||+||++++++.+||
T Consensus        82 ~~~~L~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~lh~~~----------------i~h~dl~p~ni~~~~~~~~kl  142 (256)
T cd08221          82 NGGTLYDKIVRQKGQLF---EEEMVLWYLFQIVSAVSYIHKAG----------------ILHRDIKTLNIFLTKAGLIKL  142 (256)
T ss_pred             CCCcHHHHHHhccccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccccCCChHhEEEeCCCCEEE
Confidence            987 43 3322211122   44556677789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|||++.......  .....+++.|++||+...  ....+|+|+   ++|+++.+ ..||..
T Consensus       143 ~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g-~~~~~~  203 (256)
T cd08221         143 GDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTL-KRTFDA  203 (256)
T ss_pred             CcCcceEEcccccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHC-CCCCCC
Confidence            9999998664443  234567889999997432  234566666   56666554 445533

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.94  E-value=8.6e-26  Score=203.78  Aligned_cols=238  Identities=12%  Similarity=0.046  Sum_probs=165.3

Q ss_pred             CCCCceEEEeceeCCC---CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          11 SRVSKWRVKPPSLKPL---GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~---~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .+++...||+|..+.+   ...||||.++.... ....+.+.+|+.+++.++||||        +++++++.+++..|++
T Consensus        13 g~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~iv   83 (266)
T cd05033          13 GGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSS-DKQRLDFLTEASIMGQFDHPNI--------IRLEGVVTKSRPVMII   83 (266)
T ss_pred             cCCccceEEEEEEccCCCCcceEEEEEcCCCCC-hHHHHHHHHHHHHHHhCCCCCc--------ceEeEEEecCCceEEE
Confidence            4677789999988654   56899999876543 3344567889999999999999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.|+ ++.........+   .....+.++.|++.||.|||+++                |+|+||||+||++++++.
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~Lh~~~----------------i~H~di~p~nili~~~~~  144 (266)
T cd05033          84 TEYMENGSLDKFLRENDGKF---TVGQLVGMLRGIASGMKYLSEMN----------------YVHRDLAARNILVNSNLV  144 (266)
T ss_pred             EEcCCCCCHHHHHHhccCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCcceEEEcCCCC
Confidence            9999987 443333222222   45556778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC----CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcc
Q psy6542         167 VRISDLGLACDFSKKKP----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMD  237 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~  237 (334)
                      ++|+|||+++.......    ....++..|++||...  .....+|+|+   ++|+++..+..||........       
T Consensus       145 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~-------  217 (266)
T cd05033         145 CKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDV-------  217 (266)
T ss_pred             EEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHH-------
Confidence            99999999997752211    1122356788898743  2244566666   667777656666532211000       


Q ss_pred             cccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         238 QIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                    ...+.... .     .    +.....+..+.+  +..+|...+|..|| +.++++.+.+
T Consensus       218 --------------~~~~~~~~-~-----~----~~~~~~~~~l~~--li~~cl~~~p~~Rp~~~ei~~~l~~  264 (266)
T cd05033         218 --------------IKAVEDGY-R-----L----PPPMDCPSALYQ--LMLDCWQKDRNERPTFSQIVSTLDK  264 (266)
T ss_pred             --------------HHHHHcCC-C-----C----CCCCCCCHHHHH--HHHHHcCCCcccCcCHHHHHHHHHh
Confidence                          01111000 0     0    111223344444  88888888999999 8888887765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.94  E-value=1.5e-26  Score=207.18  Aligned_cols=184  Identities=20%  Similarity=0.238  Sum_probs=145.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .|+...||++.++.+++.||+|.+..............+|+.+++.++||||        +++++++.+.+.+++||||+
T Consensus         9 ~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i--------~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    9 SGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNI--------VQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTB--------CHEEEEEEESSEEEEEEEEE
T ss_pred             eCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccc--------cccccccccccccccccccc
Confidence            4677899999999999999999999887655444455569999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .++ +..+.. ....+   ....++.++.|++.||.|||+.+                ++|+||||+||++++++.++|+
T Consensus        81 ~~~~L~~~l~-~~~~~---~~~~~~~~~~qi~~~L~~Lh~~~----------------i~H~dikp~NIl~~~~~~~~l~  140 (260)
T PF00069_consen   81 PGGSLQDYLQ-KNKPL---SEEEILKIAYQILEALAYLHSKG----------------IVHRDIKPENILLDENGEVKLI  140 (260)
T ss_dssp             TTEBHHHHHH-HHSSB---BHHHHHHHHHHHHHHHHHHHHTT----------------EEESSBSGGGEEESTTSEEEES
T ss_pred             cccccccccc-ccccc---ccccccccccccccccccccccc----------------cccccccccccccccccccccc
Confidence            996 543333 12223   45556777889999999999999                9999999999999999999999


Q ss_pred             eccccccc--CCCCCCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDF--SKKKPHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~--~~~~~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++...  .........++..|++||+..  .. +..+|+|+   ++|+++.+ ..||..
T Consensus       141 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~-~~p~~~  201 (260)
T PF00069_consen  141 DFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTG-KLPFEE  201 (260)
T ss_dssp             SGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHS-SSSSTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            99999853  222334456789999999855  33 44556666   55666554 445543

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.94  E-value=8.7e-26  Score=202.74  Aligned_cols=182  Identities=15%  Similarity=0.119  Sum_probs=137.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||++.++ ++..+|||.+......   ...+.+|+++++.++||||        +++++++...+..|+||||+
T Consensus        14 ~G~~~~v~~~~~~-~~~~~~iK~~~~~~~~---~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05059          14 SGQFGVVHLGKWR-GKIDVAIKMIREGAMS---EDDFIEEAKVMMKLSHPNL--------VQLYGVCTKQRPIFIVTEYM   81 (256)
T ss_pred             cCCCceEEEeEec-CCccEEEEEeccCCCC---HHHHHHHHHHHHhCCCCCE--------EEEEEEEcCCCceEEEEecC
Confidence            4566789999876 4778999998754432   2346679999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|+ + +++.... .   .......+.++.|++.||.|||+.+                ++||||||+||++++++.+||
T Consensus        82 ~~~~L~~~l~~~~-~---~~~~~~~~~i~~qi~~~l~~lH~~~----------------i~H~dl~p~ni~i~~~~~~kl  141 (256)
T cd05059          82 ANGCLLNYLRERK-G---KLGTEWLLDMCSDVCEAMEYLESNG----------------FIHRDLAARNCLVGEDNVVKV  141 (256)
T ss_pred             CCCCHHHHHHhcc-c---CCCHHHHHHHHHHHHHHHHHHHHCC----------------cccccccHhhEEECCCCcEEE
Confidence            888 4 3333222 1   2245556777889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCcccc---Ccccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVE---SDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~---t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||+++...........+   +..|++||+.. .. ...+|+|+   ++|+++..+.+||...
T Consensus       142 ~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  205 (256)
T cd05059         142 SDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERF  205 (256)
T ss_pred             CCcccceecccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCC
Confidence            9999998665443222222   34688999743 23 34566666   6777776677777543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.94  E-value=1.1e-25  Score=215.53  Aligned_cols=189  Identities=16%  Similarity=0.081  Sum_probs=139.5

Q ss_pred             CCCCceEEEeceeCCC-----CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeE
Q psy6542          11 SRVSKWRVKPPSLKPL-----GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~-----~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      -+++.+.||+|.+..+     +..||||+++.... ....+.+.+|+++++.+. ||||        +++++++.+.+.+
T Consensus        46 G~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~-~~~~~~~~~Ei~~l~~l~~HpnI--------v~l~~~~~~~~~~  116 (400)
T cd05105          46 GSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR-SSEKQALMSELKIMTHLGPHLNI--------VNLLGACTKSGPI  116 (400)
T ss_pred             cCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC-hHHHHHHHHHHHHHHhcCCCCCe--------eeEEEEEccCCce
Confidence            3677889999986533     45699999976543 223457888999999996 9999        9999999999999


Q ss_pred             EEEEEccCCC-h-hHHhhhhhhh---------------------------------------------------------
Q psy6542          85 YIIGVRQSGP-K-DQISRSKINR---------------------------------------------------------  105 (334)
Q Consensus        85 ~ivmEy~~g~-l-~~l~~~~~~~---------------------------------------------------------  105 (334)
                      |||||||+|| + +++.......                                                         
T Consensus       117 ~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (400)
T cd05105         117 YIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKE  196 (400)
T ss_pred             EEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhh
Confidence            9999999988 3 3333221100                                                         


Q ss_pred             ----------------------------------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEe
Q psy6542         106 ----------------------------------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHF  151 (334)
Q Consensus       106 ----------------------------------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiH  151 (334)
                                                        ........++.++.|++.||.|||+.+                |+|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~----------------ivH  260 (400)
T cd05105         197 ASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKN----------------CVH  260 (400)
T ss_pred             hhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC----------------eeC
Confidence                                              001233445678889999999999999                999


Q ss_pred             eCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCC
Q psy6542         152 RDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       152 rDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                      |||||+|||+++++.+||+|||+++.......    ....++..|++||+.. .. ...+|+|+   ++|+++..+..||
T Consensus       261 ~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~  340 (400)
T cd05105         261 RDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPY  340 (400)
T ss_pred             CCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence            99999999999999999999999986644322    2234567799999743 23 44566666   6777776666666


Q ss_pred             CC
Q psy6542         223 HP  224 (334)
Q Consensus       223 ~~  224 (334)
                      ..
T Consensus       341 ~~  342 (400)
T cd05105         341 PG  342 (400)
T ss_pred             cc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG2052|consensus

Probab=99.94  E-value=5.9e-27  Score=215.46  Aligned_cols=175  Identities=19%  Similarity=0.309  Sum_probs=142.2

Q ss_pred             eeecCCCCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHh--cCCCCcccccccceeeEEEEeecC-
Q psy6542           5 RRRPRESRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNH--LRNEPFKKCVLLFKMNLYKVTSEP-   81 (334)
Q Consensus         5 ~~~~~~~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~--l~h~~i~~~~~~~~v~~~~~~~~~-   81 (334)
                      |-|++|+|.++|+         |+.||||++....+.+     +.+|.+|++.  |+|+||        ..|..+-..+ 
T Consensus       221 kGRyGEVwrG~wr---------Ge~VAVKiF~srdE~S-----WfrEtEIYqTvmLRHENI--------LgFIaaD~~~~  278 (513)
T KOG2052|consen  221 KGRFGEVWRGRWR---------GEDVAVKIFSSRDERS-----WFRETEIYQTVMLRHENI--------LGFIAADNKDN  278 (513)
T ss_pred             Cccccceeecccc---------CCceEEEEecccchhh-----hhhHHHHHHHHHhccchh--------hhhhhccccCC
Confidence            4699999999999         9999999999665533     3448888775  899999        6666554322 


Q ss_pred             ---CeEEEEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCC
Q psy6542          82 ---NSHYIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKP  156 (334)
Q Consensus        82 ---~~~~ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp  156 (334)
                         ..+|+|++|-+.|  .|++.+...      ....++.++..+++||.+||..        ||+|+++|.|.|||||.
T Consensus       279 gs~TQLwLvTdYHe~GSL~DyL~r~tv------~~~~ml~LalS~AsGLaHLH~e--------I~GTqgKPaIAHRDlKS  344 (513)
T KOG2052|consen  279 GSWTQLWLVTDYHEHGSLYDYLNRNTV------TTEGMLKLALSIASGLAHLHME--------IVGTQGKPAIAHRDLKS  344 (513)
T ss_pred             CceEEEEEeeecccCCcHHHHHhhccC------CHHHHHHHHHHHhhhHHHHHHH--------HhcCCCCchhhcccccc
Confidence               3599999999888  677755432      5667788899999999999986        89999999999999999


Q ss_pred             CceeeCCCCCEEEEecccccccCCCC------CCccccCcccccccccccc--------CCcceeeh---hHHHHH
Q psy6542         157 ANILLDEHGHVRISDLGLACDFSKKK------PHASVESDCILHGYIKKLG--------GPFVSAWQ---TRYAKL  215 (334)
Q Consensus       157 ~NiLl~~~~~vkl~DFGla~~~~~~~------~~~~~~t~~~~~~~v~~~~--------~~~~~~w~---~~~~~l  215 (334)
                      .|||+.++|.+.|+|+|||....+..      .+..+||..||+||+++..        |..+|+|+   ++||..
T Consensus       345 KNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEia  420 (513)
T KOG2052|consen  345 KNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIA  420 (513)
T ss_pred             ccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999998766553      3556899999999995432        56788888   667765

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.94  E-value=9e-26  Score=203.98  Aligned_cols=187  Identities=13%  Similarity=0.048  Sum_probs=141.7

Q ss_pred             CCCCCceEEEeceeCCCCC---cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          10 ESRVSKWRVKPPSLKPLGF---PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        10 ~~~~~~~~V~~a~~~~~~~---~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      -.+++.+.||+|..+.++.   .||||.+..... ....+.+..|+++++.++||||        +++++++.+++.+++
T Consensus        12 lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni--------~~~~~~~~~~~~~~l   82 (269)
T cd05065          12 IGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYT-EKQRRDFLSEASIMGQFDHPNI--------IHLEGVVTKSRPVMI   82 (269)
T ss_pred             ecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCC-HHHHHHHHHHHHHHHhCCCcCc--------ceEEEEECCCCceEE
Confidence            3567788999999987765   599999876433 3345678889999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      ||||++|+ ++.+.......+   .....+.++.|++.||.|||+++                ++||||||+||+++.++
T Consensus        83 v~e~~~~~~L~~~l~~~~~~~---~~~~~~~i~~~l~~al~~lH~~g----------------~~H~dl~p~nili~~~~  143 (269)
T cd05065          83 ITEFMENGALDSFLRQNDGQF---TVIQLVGMLRGIAAGMKYLSEMN----------------YVHRDLAARNILVNSNL  143 (269)
T ss_pred             EEecCCCCcHHHHHhhCCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeecccChheEEEcCCC
Confidence            99999987 544433322222   44556677889999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCC----ccc---cCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPH----ASV---ESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~----~~~---~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .+||+|||++.........    ...   .+..|++||...  .....+|+|+   ++|+++..+..||..
T Consensus       144 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~  214 (269)
T cd05065         144 VCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWD  214 (269)
T ss_pred             cEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCC
Confidence            9999999999765443211    111   134688898743  2244677777   667777656667644

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG1151|consensus

Probab=99.94  E-value=4.1e-26  Score=209.77  Aligned_cols=184  Identities=17%  Similarity=0.143  Sum_probs=147.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-----chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee-cCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-----ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS-EPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-----~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~-~~~~~~   85 (334)
                      |+++-.||+|.+...+.-||+|+-.....     .....++..+|..|.+.|.||.|        |++||+|. +.+.+|
T Consensus       473 rGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRI--------VKlYDyfslDtdsFC  544 (775)
T KOG1151|consen  473 RGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRI--------VKLYDYFSLDTDSFC  544 (775)
T ss_pred             cccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCccee--------eeeeeeeeeccccce
Confidence            67777999999999999999998766554     23345688899999999999999        99999998 567899


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      -|+|||+|+ +|+.+... +..   .++.+..|+.||+.||.||.+..              |||||=||||.|||+-+.
T Consensus       545 TVLEYceGNDLDFYLKQh-klm---SEKEARSIiMQiVnAL~YLNEik--------------pPIIHYDLKPgNILLv~G  606 (775)
T KOG1151|consen  545 TVLEYCEGNDLDFYLKQH-KLM---SEKEARSIIMQIVNALKYLNEIK--------------PPIIHYDLKPGNILLVNG  606 (775)
T ss_pred             eeeeecCCCchhHHHHhh-hhh---hHHHHHHHHHHHHHHHHHHhccC--------------CCeeeeccCCccEEEecC
Confidence            999999998 77764432 233   34445566779999999999987              889999999999999554


Q ss_pred             ---CCEEEEecccccccCCCCC---------CccccCccccccccc------cccCCcceeeh---hHHHHHcCCCCCC
Q psy6542         165 ---GHVRISDLGLACDFSKKKP---------HASVESDCILHGYIK------KLGGPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       165 ---~~vkl~DFGla~~~~~~~~---------~~~~~t~~~~~~~v~------~~~~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                         |.+||+||||++.+..+..         ....||.+|+|||..      +..+.+.|+|+   ++|.++++.. ||
T Consensus       607 tacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrK-PF  684 (775)
T KOG1151|consen  607 TACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRK-PF  684 (775)
T ss_pred             cccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCC-CC
Confidence               7799999999998866542         335679999999962      23366889999   7777777665 54

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.94  E-value=1.9e-25  Score=206.98  Aligned_cols=186  Identities=15%  Similarity=0.074  Sum_probs=143.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      ..++.+.||+|.+..+|+.||||.+..... .....+.+.+|+++++.++|||+        +++++++.+++..|+|||
T Consensus        30 g~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e  101 (313)
T cd06633          30 GHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNT--------IEYKGCYLKEHTAWLVME  101 (313)
T ss_pred             ccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCC--------ccEEEEEEeCCEEEEEEe
Confidence            456778999999999999999999986544 33334567789999999999999        999999999999999999


Q ss_pred             ccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          90 RQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        90 y~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+.|++..+.......   ......+.++.|++.||.|||+.+                ++||||||+||++++++.+||
T Consensus       102 ~~~~~l~~~l~~~~~~---l~~~~~~~~~~qi~~al~~LH~~g----------------i~H~dl~p~nili~~~~~~kL  162 (313)
T cd06633         102 YCLGSASDLLEVHKKP---LQEVEIAAITHGALQGLAYLHSHN----------------MIHRDIKAGNILLTEPGQVKL  162 (313)
T ss_pred             cCCCCHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCChhhEEECCCCCEEE
Confidence            9988843333322222   244555667889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-----ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-----LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-----~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++.....  .....|+..|++||+..     .....+|+|+   ++|++ ..+..||....
T Consensus       163 ~dfg~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el-~~g~~p~~~~~  224 (313)
T cd06633         163 ADFGSASKSSP--ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPLFNMN  224 (313)
T ss_pred             eecCCCcccCC--CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHH-HhCCCCCCCCC
Confidence            99999864332  23456788899999742     2244567777   55555 45666765544

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.94  E-value=4.6e-26  Score=204.49  Aligned_cols=187  Identities=18%  Similarity=0.169  Sum_probs=146.6

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      ..++...||+|.+..+++.||+|.+.+... .....+.+.+|++++++++||||        +++++.+.+++.+|+|||
T Consensus         9 ~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           9 GKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFL--------VNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             ccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCCh--------HHHHHhhcCCCeEEEEEe
Confidence            346677999999999999999999987554 32455678889999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +....... ..   .....+..++.|++.||.|||+.+                ++|+||+|+||++++++.++
T Consensus        81 ~~~~~~L~~~l~~~-~~---l~~~~~~~~~~~i~~~l~~lh~~~----------------i~h~dl~~~nil~~~~~~~~  140 (258)
T cd05578          81 LLLGGDLRYHLSQK-VK---FSEEQVKFWICEIVLALEYLHSKG----------------IIHRDIKPDNILLDEQGHVH  140 (258)
T ss_pred             CCCCCCHHHHHHhc-CC---cCHHHHHHHHHHHHHHHHHHHhCC----------------eeccCCCHHHeEEcCCCCEE
Confidence            99998 43332222 12   244556677889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC-CCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK-PHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||++....... .....++..|++||+..  .....+|.|+   ++|+++ .+..||...+
T Consensus       141 l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~-~g~~p~~~~~  203 (258)
T cd05578         141 ITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECL-RGKRPYRGHS  203 (258)
T ss_pred             EeecccccccCCCccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHH-hCCCCCCCCC
Confidence            99999998765542 33456778899999742  2355677777   556655 4566766554

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1e-25  Score=208.52  Aligned_cols=187  Identities=21%  Similarity=0.195  Sum_probs=142.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc-hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE-SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~-~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++...||+|.+..+++.||||.+...... ....+.+..|+++++.++|+||        +++++.+.+++..|+||||
T Consensus        11 ~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~lv~e~   82 (316)
T cd05574          11 KGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFL--------PTLYASFQTETYLCLVMDY   82 (316)
T ss_pred             CCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCc--------hhheeeeecCCEEEEEEEe
Confidence            456679999999999999999999876553 2345578889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      +.|+ +..+... ....+   .......++.|++.||.|||+.+                ++|+||||+||+++.++.++
T Consensus        83 ~~~~~L~~~~~~~~~~~l---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dlkp~Nili~~~~~~~  143 (316)
T cd05574          83 CPGGELFRLLQRQPGKCL---SEEVARFYAAEVLLALEYLHLLG----------------IVYRDLKPENILLHESGHIM  143 (316)
T ss_pred             cCCCCHHHHHHhCCCCcc---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCChHHeEEcCCCCEE
Confidence            9987 4333332 11223   44445567779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC-------------------------------CccccCcccccccccc-cc-CCcceeeh---hHH
Q psy6542         169 ISDLGLACDFSKKKP-------------------------------HASVESDCILHGYIKK-LG-GPFVSAWQ---TRY  212 (334)
Q Consensus       169 l~DFGla~~~~~~~~-------------------------------~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~  212 (334)
                      |+|||++........                               ....|+..|++||+.. .. +..+|+|+   ++|
T Consensus       144 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~  223 (316)
T cd05574         144 LSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLY  223 (316)
T ss_pred             EeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHH
Confidence            999999875533211                               1235677899999853 22 34566666   555


Q ss_pred             HHHcCCCCCCCCCC
Q psy6542         213 AKLFPNRLELHPES  226 (334)
Q Consensus       213 ~~l~~~~~~~~~~~  226 (334)
                      +++ .+..||.+.+
T Consensus       224 ~l~-~g~~pf~~~~  236 (316)
T cd05574         224 EML-YGTTPFKGSN  236 (316)
T ss_pred             HHh-hCCCCCCCCc
Confidence            554 5666776554

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.4e-25  Score=200.40  Aligned_cols=185  Identities=15%  Similarity=0.059  Sum_probs=140.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||+|.+.. ++.||+|.++..... ...+.+.+|++++++++|+||        +++++++.+.+..|+||||+
T Consensus         5 ~g~~g~v~~~~~~~-~~~v~~K~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~v~e~~   74 (251)
T cd05041           5 KGNFGDVYKGVLKG-NTEVAVKTCRSTLPP-DLKRKFLQEAEILKQYDHPNI--------VKLIGVCVQKQPIYIVMELV   74 (251)
T ss_pred             cCCCceEEEEEEeC-CCcEEEEeccccCCH-HHHHHHHHHHHHHHhCCCCCe--------EEEEEEEecCCCeEEEEEcC
Confidence            46778999999988 999999998865443 344578889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +.........   ......++.++.|++.||.|||+++                ++||||||+||+++.++.++|+
T Consensus        75 ~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~lH~~~----------------i~h~di~p~nili~~~~~~~l~  135 (251)
T cd05041          75 PGGSLLTFLRKKKN---RLTVKKLLQMSLDAAAGMEYLESKN----------------CIHRDLAARNCLVGENNVLKIS  135 (251)
T ss_pred             CCCcHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHhCC----------------EehhhcCcceEEEcCCCcEEEe
Confidence            888 4333222211   2245556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCC----ccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPH----ASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~~----~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++.........    ....+..|++||+.. .. ...+|.|+   ++|+++.++..||...
T Consensus       136 d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~  199 (251)
T cd05041         136 DFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGM  199 (251)
T ss_pred             eccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccC
Confidence            99999865432211    112245688899743 22 34555566   6677776677776544

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.94  E-value=4.5e-26  Score=214.65  Aligned_cols=184  Identities=17%  Similarity=0.123  Sum_probs=140.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC------CeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP------NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~------~~~~   85 (334)
                      +++...||+|.+..+|+.||||.+.+...+....+.+.+|+.+++.++|+||        +++++++..+      ...|
T Consensus        26 ~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~~~   97 (353)
T cd07850          26 SGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNI--------IGLLNVFTPQKSLEEFQDVY   97 (353)
T ss_pred             cCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCC--------cceeeeeccCCCccccCcEE
Confidence            4677899999999999999999987654433344566789999999999999        9999988644      3579


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||||+.+++.......   +   ....+..++.|++.||.|||+.+                ++||||||+||+++.++
T Consensus        98 lv~e~~~~~l~~~~~~~---l---~~~~~~~~~~ql~~aL~~LH~~g----------------i~H~dlkp~Nil~~~~~  155 (353)
T cd07850          98 LVMELMDANLCQVIQMD---L---DHERMSYLLYQMLCGIKHLHSAG----------------IIHRDLKPSNIVVKSDC  155 (353)
T ss_pred             EEEeccCCCHHHHHhhc---C---CHHHHHHHHHHHHHHHHHHHhCC----------------eeeCCCCHHHEEECCCC
Confidence            99999998843322211   2   34445567789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCC-CccccCccccccccc-ccc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKP-HASVESDCILHGYIK-KLG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~-~~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++....... ....++..|++||+. ... ...+|+|+   ++|+++ .+..||.+.+
T Consensus       156 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~-~g~~pf~~~~  221 (353)
T cd07850         156 TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMI-RGTVLFPGTD  221 (353)
T ss_pred             CEEEccCccceeCCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHH-HCCCCCCCCC
Confidence            999999999987655432 334568889999974 223 44566666   555555 5666776554

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.94  E-value=2.4e-26  Score=209.15  Aligned_cols=189  Identities=20%  Similarity=0.156  Sum_probs=144.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      ..++.+.||+|.++.+|..||||++............+.+|+++++.++|||+        +++++++.+++..|++|||
T Consensus         8 ~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i--------v~~~~~~~~~~~~~iv~e~   79 (283)
T cd07835           8 GEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNI--------VRLLDVVHSENKLYLVFEF   79 (283)
T ss_pred             cCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCc--------cCHhheeccCCeEEEEEec
Confidence            45678899999999999999999998665433344567789999999999999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +++.+..+......  ........+.++.|++.||.|||+++                ++||||+|+||++++++.++|+
T Consensus        80 ~~~~l~~~~~~~~~--~~~~~~~~~~~~~~i~~~L~~lH~~~----------------~~H~dl~p~nil~~~~~~~~l~  141 (283)
T cd07835          80 LDLDLKKYMDSSPL--TGLDPPLIKSYLYQLLQGIAYCHSHR----------------VLHRDLKPQNLLIDREGALKLA  141 (283)
T ss_pred             cCcCHHHHHhhCCC--CCCCHHHHHHHHHHHHHHHHHHHHCC----------------eeCCCCCHHHEEEcCCCcEEEe
Confidence            98774333222110  12355666778889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC--CccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP--HASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~~--~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||++........  ....++..|++||+...  . ...+|+|+   ++|+++ ++.+||.+.+
T Consensus       142 df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~-~g~~pf~~~~  204 (283)
T cd07835         142 DFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMV-NRRPLFPGDS  204 (283)
T ss_pred             ecccccccCCCccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHH-hCCCCCCCCC
Confidence            9999986543322  22345778999997432  2 34566677   555554 5566775544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.1e-25  Score=204.60  Aligned_cols=184  Identities=17%  Similarity=0.118  Sum_probs=142.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++.+..+++.||+|.++....  ...+.+.+|+++++.++|+|+        +++++++..++.+|+||||+
T Consensus        15 ~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   84 (280)
T cd06611          15 DGAFGKVYKAQHKETGLFAAAKIIQIESE--EELEDFMVEIDILSECKHPNI--------VGLYEAYFYENKLWILIEFC   84 (280)
T ss_pred             CCCCceEEEEEEcCCCcEEEEEEEeeCCH--HHHHHHHHHHHHHHhCCCCce--------eEEEEEEecCCeEEEEeecc
Confidence            46677999999999999999999975432  234567789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ ++.+.......+   ....+..++.|++.||.|||+++                ++|+||||+||+++.++.++|+
T Consensus        85 ~~~~L~~~~~~~~~~l---~~~~~~~~~~ql~~~l~~lh~~~----------------i~h~dl~p~nili~~~~~~~l~  145 (280)
T cd06611          85 DGGALDSIMLELERGL---TEPQIRYVCRQMLEALNFLHSHK----------------VIHRDLKAGNILLTLDGDVKLA  145 (280)
T ss_pred             CCCcHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCChhhEEECCCCCEEEc
Confidence            998 544433322223   44555677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc------cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK------LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~------~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++.......  .....+++.|++||+..      .. ...+|+|+   ++|++ ..+.+||...
T Consensus       146 d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l-~~g~~p~~~~  211 (280)
T cd06611         146 DFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIEL-AQMEPPHHEL  211 (280)
T ss_pred             cCccchhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHH-HhCCCCcccC
Confidence            999987654332  23345788899999742      11 23566666   45555 5566676544

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.94  E-value=2e-25  Score=207.06  Aligned_cols=185  Identities=15%  Similarity=0.055  Sum_probs=142.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      ..++...||++.+..+|..||||.+..... .....+.+..|+++++.++|+|+        +++++++.+++..|+|||
T Consensus        34 g~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e  105 (317)
T cd06635          34 GHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNS--------IEYKGCYLREHTAWLVME  105 (317)
T ss_pred             ccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCE--------EEEEEEEeeCCeEEEEEe
Confidence            456778999999999999999999986543 33344567889999999999999        999999999999999999


Q ss_pred             ccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          90 RQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        90 y~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+.|++..+.......   .....+..++.|++.||.|||+.+                |+||||+|+||++++++.++|
T Consensus       106 ~~~g~l~~~~~~~~~~---l~~~~~~~i~~~i~~~l~~lH~~~----------------i~H~dL~p~Nil~~~~~~~kl  166 (317)
T cd06635         106 YCLGSASDLLEVHKKP---LQEVEIAAITHGALQGLAYLHSHN----------------MIHRDIKAGNILLTEPGQVKL  166 (317)
T ss_pred             CCCCCHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCcccEEECCCCCEEE
Confidence            9998843332222222   244555667789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-----ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-----LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-----~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||++......  ....++..|++||...     .....+|+|+   ++|+++ .+.+||...
T Consensus       167 ~dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~-~g~~p~~~~  227 (317)
T cd06635         167 ADFGSASIASPA--NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA-ERKPPLFNM  227 (317)
T ss_pred             ecCCCccccCCc--ccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHH-hCCCCCCCc
Confidence            999998755432  3346788899999742     2244566666   555554 456666443

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.94  E-value=3.8e-26  Score=209.03  Aligned_cols=190  Identities=18%  Similarity=0.144  Sum_probs=141.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCe-----EE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNS-----HY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~-----~~   85 (334)
                      +++...||+|.+..+|+.||||.++...........+.+|+.+++.++ |+||        +++++++...+.     +|
T Consensus        11 ~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i--------~~~~~~~~~~~~~~~~~~~   82 (295)
T cd07837          11 EGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYI--------VRLLDVEHVEEKNGKPSLY   82 (295)
T ss_pred             ccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCc--------cceeeeEeecCCCCCceEE
Confidence            566789999999999999999998765443334456778999999996 5999        999999887655     89


Q ss_pred             EEEEccCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-
Q psy6542          86 IIGVRQSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-  163 (334)
Q Consensus        86 ivmEy~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-  163 (334)
                      +||||+++++ +++................+.++.||+.||.|||+++                ++||||||+||+++. 
T Consensus        83 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~----------------i~H~dl~~~nil~~~~  146 (295)
T cd07837          83 LVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG----------------VMHRDLKPQNLLVDKQ  146 (295)
T ss_pred             EEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCC----------------eeecCCChHHEEEecC
Confidence            9999999884 3333222110112355666777889999999999999                999999999999999 


Q ss_pred             CCCEEEEecccccccCCCCC--CccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         164 HGHVRISDLGLACDFSKKKP--HASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ++.+||+|||+++.......  ....+++.|++||+..  .. ...+|+|+   ++|+++ ++..||.+.+
T Consensus       147 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~-~g~~~~~~~~  216 (295)
T cd07837         147 KGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMS-RKQPLFPGDS  216 (295)
T ss_pred             CCeEEEeecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHH-cCCCCCCCCC
Confidence            88999999999986543322  2234577899999742  22 44566666   556655 4566776544

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.94  E-value=1e-25  Score=205.98  Aligned_cols=186  Identities=17%  Similarity=0.125  Sum_probs=140.0

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      ..++...||+|.++.+|+.||||.+....... ....+.+|+++++.++|+||        +++++++.+++..|+||||
T Consensus        14 g~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844          14 GEGSYATVYKGRSKLTGQLVALKEIRLEHEEG-APFTAIREASLLKDLKHANI--------VTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             eecCCeEEEEEEEcCCCcEEEEEEEecccccC-CchhHHHHHHHHhhCCCcce--------eeEEEEEecCCeEEEEEec
Confidence            34677799999999999999999998654321 22345679999999999999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +.+++..+.......+   ....+..++.|++.||.|||+++                ++||||||+||++++++.+||+
T Consensus        85 ~~~~L~~~~~~~~~~~---~~~~~~~~~~ql~~al~~lH~~~----------------i~H~dl~p~nil~~~~~~~kl~  145 (291)
T cd07844          85 LDTDLKQYMDDCGGGL---SMHNVRLFLFQLLRGLAYCHQRR----------------VLHRDLKPQNLLISERGELKLA  145 (291)
T ss_pred             CCCCHHHHHHhCCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecccCCHHHEEEcCCCCEEEC
Confidence            9987543323221222   44556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||+++......  .....++..|++||+..  .. ...+|+|+   ++|+++. +..||.+.
T Consensus       146 dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~-g~~~~~~~  207 (291)
T cd07844         146 DFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMAT-GRPLFPGS  207 (291)
T ss_pred             ccccccccCCCCccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHh-CCCCCCCC
Confidence            999997543222  12234577889999743  22 34566666   5566554 56666443

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.94  E-value=7.3e-26  Score=209.02  Aligned_cols=192  Identities=21%  Similarity=0.134  Sum_probs=144.9

Q ss_pred             CCCCceEEEeceeCC--CCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEE
Q psy6542          11 SRVSKWRVKPPSLKP--LGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHY   85 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~--~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~   85 (334)
                      ..++...||+|.++.  +++.||||.+..... .......+.+|+.+++.++||||        +++++++.+.  +.+|
T Consensus         9 g~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~   80 (316)
T cd07842           9 GRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENV--------VSLVEVFLEHADKSVY   80 (316)
T ss_pred             ccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCc--------cceEEEEeCCCCceEE
Confidence            356788999999998  899999999987542 22234556779999999999999        9999999987  8899


Q ss_pred             EEEEccCCChh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-
Q psy6542          86 IIGVRQSGPKD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-  163 (334)
Q Consensus        86 ivmEy~~g~l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-  163 (334)
                      +||||+++++. .+...............+..++.|++.||.|||+.+                ++||||||+||+++. 
T Consensus        81 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~----------------i~h~dlkp~Nil~~~~  144 (316)
T cd07842          81 LLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNW----------------VLHRDLKPANILVMGE  144 (316)
T ss_pred             EEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCC----------------EeeCCCCHHHEEEcCC
Confidence            99999998843 332222111113355666777889999999999999                999999999999999 


Q ss_pred             ---CCCEEEEecccccccCCCCC-----CccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         164 ---HGHVRISDLGLACDFSKKKP-----HASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       164 ---~~~vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                         ++.+||+|||+++.......     ....++..|++||+..  . ....+|+|+   ++|++ ..+.+||.+...
T Consensus       145 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l-~~~~~~~~~~~~  221 (316)
T cd07842         145 GPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAEL-LTLEPIFKGREA  221 (316)
T ss_pred             CCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHH-HhcCCCCcCCcc
Confidence               89999999999986644322     2335678899999743  2 244567777   44554 556778876654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.94  E-value=1.7e-25  Score=203.20  Aligned_cols=184  Identities=15%  Similarity=0.113  Sum_probs=142.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.+..++..||||++...... ...+.+.+|+.+++.++|+||        +++++++.+++.+|+||||+
T Consensus        14 ~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06640          14 KGSFGEVFKGIDNRTQQVVAIKIIDLEEAE-DEIEDIQQEITVLSQCDSPYV--------TKYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             cCCCeEEEEEEEccCCEEEEEEEEeccccH-HHHHHHHHHHHHHHhCCCCCE--------eeEEEEEEECCEEEEEEecC
Confidence            456779999999999999999998865432 234578889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+...  ..+   .......++.|++.||.|||+.+                ++|+||+|+||++++++.++|+
T Consensus        85 ~~~~L~~~i~~--~~l---~~~~~~~~~~~l~~~l~~lh~~~----------------ivH~dl~p~Nil~~~~~~~~l~  143 (277)
T cd06640          85 GGGSALDLLRA--GPF---DEFQIATMLKEILKGLDYLHSEK----------------KIHRDIKAANVLLSEQGDVKLA  143 (277)
T ss_pred             CCCcHHHHHhc--CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccCcCCChhhEEEcCCCCEEEc
Confidence            998 3332222  122   33445667789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||++.......  .....++..|++||+..  .....+|.|+   ++|+++ ++.+||....
T Consensus       144 dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~-tg~~p~~~~~  205 (277)
T cd06640         144 DFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELA-KGEPPNSDMH  205 (277)
T ss_pred             ccccceeccCCccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHH-HCCCCCCCcC
Confidence            999998665433  22335677889999843  2244566666   556654 5666765443

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.94  E-value=1.9e-25  Score=201.52  Aligned_cols=181  Identities=13%  Similarity=0.098  Sum_probs=139.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.++.+|+.||||++.......  ...+.+|+.+++.++||||        +++++++..++.+|+||||+
T Consensus        19 ~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~--~~~~~~e~~~l~~~~h~~i--------i~~~~~~~~~~~~~iv~e~~   88 (267)
T cd06646          19 SGTYGDVYKARNLHTGELAAVKIIKLEPGDD--FSLIQQEIFMVKECKHCNI--------VAYFGSYLSREKLWICMEYC   88 (267)
T ss_pred             cCCCeEEEEEEECCCCeEEEEEEEecCccch--HHHHHHHHHHHHhcCCCCe--------eeeeEEEEeCCEEEEEEeCC
Confidence            4667799999999999999999997554322  2356789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +++ +..+.... ..+   .......++.|++.||.|||+.+                |+||||||+||++++++.++|+
T Consensus        89 ~~~~L~~~~~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dl~p~nill~~~~~~~l~  148 (267)
T cd06646          89 GGGSLQDIYHVT-GPL---SELQIAYVCRETLQGLAYLHSKG----------------KMHRDIKGANILLTDNGDVKLA  148 (267)
T ss_pred             CCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCCHHHEEECCCCCEEEC
Confidence            987 44332221 122   44555677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc----c-cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK----L-GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~----~-~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      |||++.......  .....++..|++||+..    . ....+|+|+   ++|+++. +..|+.
T Consensus       149 dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~-g~~p~~  210 (267)
T cd06646         149 DFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAE-LQPPMF  210 (267)
T ss_pred             cCccceeecccccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHh-CCCCcc
Confidence            999998664332  23346788899999742    1 133566666   5666655 455654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.94  E-value=2.6e-26  Score=210.55  Aligned_cols=188  Identities=16%  Similarity=0.134  Sum_probs=144.4

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcc---hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHE---SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~---~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      ..++.+.||+|.+..+|+.||||.++.....   ......+..|+++++.++|+||        +++++++.+++.+|+|
T Consensus         9 g~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i--------~~~~~~~~~~~~~~lv   80 (298)
T cd07841           9 GEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNI--------IGLLDVFGHKSNINLV   80 (298)
T ss_pred             eeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCC--------hhhhheeecCCEEEEE
Confidence            3567789999999999999999999876543   3344566789999999999999        9999999999999999


Q ss_pred             EEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          88 GVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        88 mEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      |||+.|.+..+......   ......++.++.|++.||.|||+++                ++|+||||+||+++.++.+
T Consensus        81 ~e~~~~~L~~~i~~~~~---~~~~~~~~~~~~qi~~al~~lH~~~----------------i~H~dl~p~nill~~~~~~  141 (298)
T cd07841          81 FEFMETDLEKVIKDKSI---VLTPADIKSYMLMTLRGLEYLHSNW----------------ILHRDLKPNNLLIASDGVL  141 (298)
T ss_pred             EcccCCCHHHHHhccCC---CCCHHHHHHHHHHHHHHHHHHHhCC----------------eeecCCChhhEEEcCCCCE
Confidence            99995555444333211   2245556677889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCC--CccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKKP--HASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       168 kl~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|+|||+++.......  ....++..|++||...  .. ...+|+|+   ++|+++.+ .++|.+.+
T Consensus       142 ~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g-~~~~~~~~  207 (298)
T cd07841         142 KLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLR-VPFLPGDS  207 (298)
T ss_pred             EEccceeeeeccCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcC-CccccCCc
Confidence            9999999987655432  2234567789999742  22 34566666   56666554 66666544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.94  E-value=7.6e-26  Score=205.98  Aligned_cols=239  Identities=13%  Similarity=-0.013  Sum_probs=164.1

Q ss_pred             CCCceEEEeceeCC-----CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLKP-----LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-----~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      .++...||+|....     .++.||||.++.... ......+.+|+.+++.++||||        +++++++.+.+..++
T Consensus        15 ~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~~~~l~h~~i--------v~~~~~~~~~~~~~~   85 (283)
T cd05091          15 EDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE-GPLREEFKHEAMMRSRLQHPNI--------VCLLGVVTKEQPLSM   85 (283)
T ss_pred             CCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC-HHHHHHHHHHHHHHhcCCCCCc--------CeEEEEEcCCCceEE
Confidence            35667899998754     468899999985543 2345568889999999999999        999999999999999


Q ss_pred             EEEccCCC-hh-HHhhhhh-----------hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeC
Q psy6542          87 IGVRQSGP-KD-QISRSKI-----------NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRD  153 (334)
Q Consensus        87 vmEy~~g~-l~-~l~~~~~-----------~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrD  153 (334)
                      ++||+.++ +. ++.....           ..........++.++.|++.||.|||+++                ++|||
T Consensus        86 ~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~g----------------i~H~d  149 (283)
T cd05091          86 IFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHH----------------VVHKD  149 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcC----------------ccccc
Confidence            99999887 43 3321110           00011244456677889999999999999                99999


Q ss_pred             CCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         154 LKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       154 lKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||+||++++++.+||+|||+++.......    ....+++.|++||...  .....+|+|+   ++|+++..+..||.+
T Consensus       150 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~  229 (283)
T cd05091         150 LATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG  229 (283)
T ss_pred             cchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence            999999999999999999999986644332    2233467899999743  2244566666   777887767777654


Q ss_pred             CCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHH
Q psy6542         225 ESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQEL  303 (334)
Q Consensus       225 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~l  303 (334)
                      .......                         ..+...+.  ..    .....+..+..  +...|.+.+|..|| +.++
T Consensus       230 ~~~~~~~-------------------------~~i~~~~~--~~----~~~~~~~~~~~--li~~cl~~~p~~RP~~~~i  276 (283)
T cd05091         230 YSNQDVI-------------------------EMIRNRQV--LP----CPDDCPAWVYT--LMLECWNEFPSRRPRFKDI  276 (283)
T ss_pred             CCHHHHH-------------------------HHHHcCCc--CC----CCCCCCHHHHH--HHHHHhCCCcccCCCHHHH
Confidence            3211000                         11100000  00    01223344444  77778888888888 8888


Q ss_pred             HHHHH
Q psy6542         304 LGSMA  308 (334)
Q Consensus       304 L~~l~  308 (334)
                      +.+|+
T Consensus       277 ~~~l~  281 (283)
T cd05091         277 HSRLR  281 (283)
T ss_pred             HHHhh
Confidence            87765

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.94  E-value=9.9e-26  Score=204.71  Aligned_cols=190  Identities=13%  Similarity=0.045  Sum_probs=139.5

Q ss_pred             CCCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEE
Q psy6542          11 SRVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        11 ~~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      .+++...||+|.++     .++..||||.+..... ......+.+|+.+++.++||||        +++++++.+++..+
T Consensus        15 g~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i--------v~~~~~~~~~~~~~   85 (277)
T cd05062          15 GQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAAS-MRERIEFLNEASVMKEFNCHHV--------VRLLGVVSQGQPTL   85 (277)
T ss_pred             ccccCCeEEEEEeccCCCCCceeEEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCe--------eeEEEEEcCCCCeE
Confidence            35667789988764     3467899999865432 2234567889999999999999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCc
Q psy6542          86 IIGVRQSGP-KDQISRSKINR------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPAN  158 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~N  158 (334)
                      +||||+.++ ++.+.......      ........++.++.|++.||.|||+.+                ++||||||+|
T Consensus        86 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~----------------~vH~dlkp~N  149 (277)
T cd05062          86 VIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANK----------------FVHRDLAARN  149 (277)
T ss_pred             EEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC----------------cccCCcchhe
Confidence            999999987 54433321111      011234556677889999999999999                9999999999


Q ss_pred             eeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         159 ILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       159 iLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |++++++.++|+|||+++.......    ....++..|++||+..  ..+..+|+|+   ++|+++..+..||.+.
T Consensus       150 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~  225 (277)
T cd05062         150 CMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGM  225 (277)
T ss_pred             EEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999986543321    1223466789999743  2344566677   6777777666676443

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.2e-25  Score=203.66  Aligned_cols=189  Identities=12%  Similarity=0.044  Sum_probs=140.7

Q ss_pred             CCCceEEEeceeCCC-----CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLKPL-----GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~-----~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++...||++..+..     +..||||.+....... ....+.+|+++++.++|+||        +++++++..++..|+
T Consensus        16 ~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~-~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~~~~~~   86 (277)
T cd05032          16 QGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMR-ERIEFLNEASVMKEFNCHHV--------VRLLGVVSTGQPTLV   86 (277)
T ss_pred             CCCCceEEEEEEeccCCCCcceeEEEEecCCccCHH-HHHHHHHHHHHHHhCCCCce--------eEEEEEEcCCCCcEE
Confidence            466778999887654     4889999987554322 33467789999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          87 IGVRQSGP-KDQISRSKINR------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                      ||||++++ +..+.......      ........++.++.|++.||.|||+.+                ++||||||+||
T Consensus        87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~di~p~ni  150 (277)
T cd05032          87 VMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKK----------------FVHRDLAARNC  150 (277)
T ss_pred             EEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------ccccccChheE
Confidence            99999877 54433321110      011234556778889999999999999                99999999999


Q ss_pred             eeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         160 LLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       160 Ll~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +++.++.+||+|||+++......    .....++..|++||...  .....+|+|+   ++|+++..+..||.+.
T Consensus       151 ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  225 (277)
T cd05032         151 MVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGL  225 (277)
T ss_pred             EEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccC
Confidence            99999999999999998654432    12234567789999743  3345677777   6667666567676543

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.94  E-value=3.7e-26  Score=207.83  Aligned_cols=188  Identities=16%  Similarity=0.142  Sum_probs=142.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||+|.+..+|+.||||.++...... ....+.+|+++++.++|+|+        +++++++.+.+..|+||||+
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836          10 EGTYATVYKGRNRTTGEIVALKEIHLDAEEG-TPSTAIREISLMKELKHENI--------VRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             cCCceEEEEEEECCCCeEEEEEEeccccccc-chHHHHHHHHHHHhhcCCCE--------eeeeeeEeeCCcEEEEEecC
Confidence            4567899999999999999999998654422 23355679999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      .|++..+...... ...........++.|++.||.|||+.+                ++||||||+||++++++.++|+|
T Consensus        81 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~----------------i~h~dl~p~ni~~~~~~~~~l~d  143 (284)
T cd07836          81 DKDLKKYMDTHGV-RGALDPNTVKSFTYQLLKGIAFCHENR----------------VLHRDLKPQNLLINKRGELKLAD  143 (284)
T ss_pred             CccHHHHHHhcCC-CCCcCHHHHHHHHHHHHHHHHHHHHCC----------------eeeCCCCHHHEEECCCCcEEEee
Confidence            9884333222111 112355556777889999999999999                99999999999999999999999


Q ss_pred             cccccccCCCCC--CccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         172 LGLACDFSKKKP--HASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       172 FGla~~~~~~~~--~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ||++........  ....++..|++||+...  . ...+|.|+   ++|+++. +..||.+.+
T Consensus       144 ~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~-g~~~~~~~~  205 (284)
T cd07836         144 FGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMIT-GRPLFPGTN  205 (284)
T ss_pred             cchhhhhcCCccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCC
Confidence            999986644322  23345788999997422  2 34566666   5555554 566776654

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.94  E-value=2.8e-25  Score=203.38  Aligned_cols=184  Identities=16%  Similarity=0.084  Sum_probs=141.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||++.+..+++.||+|.+....  ....+.+.+|+++++.++|+|+        +++++.+..++.+|+||||+
T Consensus        22 ~g~~g~vy~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   91 (292)
T cd06644          22 DGAFGKVYKAKNKETGALAAAKVIETKS--EEELEDYMVEIEILATCNHPYI--------VKLLGAFYWDGKLWIMIEFC   91 (292)
T ss_pred             CCCCeEEEEEEECCCCceEEEEEeccCC--HHHHHHHHHHHHHHHhCCCCcE--------eeeEEEEEeCCeEEEEEecC
Confidence            4677899999999999999999997543  2345567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ ++.+.......+   ....+..++.|++.||.|||+.+                ++||||||+||+++.++.++|+
T Consensus        92 ~~~~l~~~~~~~~~~l---~~~~~~~~~~ql~~~l~~lH~~~----------------i~H~dlkp~Nili~~~~~~kl~  152 (292)
T cd06644          92 PGGAVDAIMLELDRGL---TEPQIQVICRQMLEALQYLHSMK----------------IIHRDLKAGNVLLTLDGDIKLA  152 (292)
T ss_pred             CCCcHHHHHHhhcCCC---CHHHHHHHHHHHHHHHHHHhcCC----------------eeecCCCcceEEEcCCCCEEEc
Confidence            998 443322222222   44556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc------ccCC-cceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK------LGGP-FVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~------~~~~-~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++.......  .....++..|++||+..      ..++ .+|+|+   ++|+++ ++.+||...
T Consensus       153 dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~-~g~~p~~~~  218 (292)
T cd06644         153 DFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA-QIEPPHHEL  218 (292)
T ss_pred             cCccceeccccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHh-cCCCCCccc
Confidence            999987643332  23345778899999742      1123 456666   555654 556666443

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=1.5e-25  Score=204.31  Aligned_cols=185  Identities=14%  Similarity=0.135  Sum_probs=145.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||++.+..+|+.||+|++..... ....+.+.+|+++++.++||||        +++++++...+.+|+||||+
T Consensus        15 ~g~~g~v~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   85 (284)
T cd06620          15 AGNGGSVSKVKHIPTGTVMAKKVVHIGAK-SSVRKQILRELQIMHECRSPYI--------VSFYGAFLNENNICMCMEFM   85 (284)
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEEEEecCc-chHHHHHHHHHHHHHHcCCCCc--------ceEeeeEecCCEEEEEEecC
Confidence            56788999999999999999999875443 3345678899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|+ ++.+.... ..+   ....+..++.|++.||.|||+ .+                ++||||||+||++++++.++|
T Consensus        86 ~~~~L~~~~~~~-~~~---~~~~~~~~~~~i~~~l~~LH~~~~----------------i~H~dl~p~nil~~~~~~~~l  145 (284)
T cd06620          86 DCGSLDRIYKKG-GPI---PVEILGKIAVAVVEGLTYLYNVHR----------------IMHRDIKPSNILVNSRGQIKL  145 (284)
T ss_pred             CCCCHHHHHHhc-cCC---CHHHHHHHHHHHHHHHHHHHHhcC----------------eeccCCCHHHEEECCCCcEEE
Confidence            988 54433221 122   445556777899999999997 57                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++............|+..|++||+.. .. ...+|+|+   ++|++ .++..||....
T Consensus       146 ~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l-~tg~~p~~~~~  206 (284)
T cd06620         146 CDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIEL-ALGKFPFAFSN  206 (284)
T ss_pred             ccCCcccchhhhccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHH-HhCCCCCcccc
Confidence            999999766544445567888999999743 22 34566666   45555 55666776544

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.94  E-value=1.7e-25  Score=201.37  Aligned_cols=185  Identities=15%  Similarity=0.090  Sum_probs=137.1

Q ss_pred             CCCceEEEeceeC--CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLK--PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~--~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .++...||+|...  .++..||+|++..... ....+.+.+|+.++++++|+||        +++++++. .+..++|||
T Consensus         5 ~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------i~~~~~~~-~~~~~lv~e   74 (257)
T cd05115           5 SGNFGCVKKGVYKMRKKQIDVAIKVLKNENE-KSVRDEMMREAEIMHQLDNPYI--------VRMIGVCE-AEALMLVME   74 (257)
T ss_pred             CCCcccEEEEEEecCCCceeEEEEEcccccC-hHHHHHHHHHHHHHHhcCCCCe--------EEEEEEEc-CCCeEEEEE
Confidence            4567789988764  4566799999975533 3345678889999999999999        99999875 457899999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +..+.......   .....++.++.|++.||.|||+++                ++||||||+||+++.++.+|
T Consensus        75 ~~~~~~L~~~l~~~~~~---~~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dlkp~nil~~~~~~~k  135 (257)
T cd05115          75 MASGGPLNKFLSGKKDE---ITVSNVVELMHQVSMGMKYLEGKN----------------FVHRDLAARNVLLVNQHYAK  135 (257)
T ss_pred             eCCCCCHHHHHHhCCCC---CCHHHHHHHHHHHHHHHHHHHhcC----------------eeecccchheEEEcCCCcEE
Confidence            99888 54333322222   245666778889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCCC---c--cccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKPH---A--SVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       169 l~DFGla~~~~~~~~~---~--~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |+|||++.........   .  ..++..|++||... .. +..+|+|+   ++|+++..+..||...
T Consensus       136 l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  202 (257)
T cd05115         136 ISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKM  202 (257)
T ss_pred             eccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcC
Confidence            9999999865443211   1  12245789999743 22 44567777   6777776677776543

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.94  E-value=1.9e-26  Score=215.49  Aligned_cols=187  Identities=19%  Similarity=0.194  Sum_probs=142.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec----CCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE----PNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~----~~~~~iv   87 (334)
                      .++.+.||++.++.+|+.||+|.+..........+.+.+|+.+++.++||||        +++++++..    ...+|+|
T Consensus        15 ~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~lv   86 (334)
T cd07855          15 SGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNI--------IAIRDILRPPGADFKDVYVV   86 (334)
T ss_pred             cCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCc--------cCHHHhccccCCCCceEEEE
Confidence            4677899999999999999999998655433445667789999999999999        998887763    3568999


Q ss_pred             EEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          88 GVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        88 mEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      |||+.|++..+.... ..   .....+..++.|++.||.|||+++                ++||||||+||++++++.+
T Consensus        87 ~e~~~~~l~~~~~~~-~~---~~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~dlkp~Nil~~~~~~~  146 (334)
T cd07855          87 MDLMESDLHHIIHSD-QP---LTEEHIRYFLYQLLRGLKYIHSAN----------------VIHRDLKPSNLLVNEDCEL  146 (334)
T ss_pred             EehhhhhHHHHhccC-CC---CCHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEEcCCCcE
Confidence            999988754443322 12   245556677789999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCC------CccccCcccccccccc---ccCCcceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKKP------HASVESDCILHGYIKK---LGGPFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       168 kl~DFGla~~~~~~~~------~~~~~t~~~~~~~v~~---~~~~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      ||+|||++........      ....++..|++||+..   .....+|+|+  ++++.+..+..||.+.+
T Consensus       147 kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~  216 (334)
T cd07855         147 RIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKN  216 (334)
T ss_pred             EecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCC
Confidence            9999999986543321      2345788899999742   2244566676  44444466777886654

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>KOG4645|consensus

Probab=99.94  E-value=1.5e-27  Score=241.99  Aligned_cols=223  Identities=17%  Similarity=0.201  Sum_probs=162.5

Q ss_pred             ceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC
Q psy6542          15 KWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP   94 (334)
Q Consensus        15 ~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~   94 (334)
                      .++||-|.+..||...|+|.++-...+....+...+|..++..++|||+        |++|++-...+..+|.||||+||
T Consensus      1248 fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNl--------V~YyGVEvHRekv~IFMEyC~~G 1319 (1509)
T KOG4645|consen 1248 FGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNL--------VRYYGVEVHREKVYIFMEYCEGG 1319 (1509)
T ss_pred             eeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccc--------cccCceeecHHHHHHHHHHhccC
Confidence            4699999999999999999998777666667788899999999999999        99999999999999999999999


Q ss_pred             -hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecc
Q psy6542          95 -KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLG  173 (334)
Q Consensus        95 -l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFG  173 (334)
                       +..+..+.. -.   ++.-...+..|++.|+.|||+.|                ||||||||+||+++.+|.+|++|||
T Consensus      1320 sLa~ll~~gr-i~---dE~vt~vyt~qll~gla~LH~~g----------------IVHRDIK~aNI~Ld~~g~iK~~DFG 1379 (1509)
T KOG4645|consen 1320 SLASLLEHGR-IE---DEMVTRVYTKQLLEGLAYLHEHG----------------IVHRDIKPANILLDFNGLIKYGDFG 1379 (1509)
T ss_pred             cHHHHHHhcc-hh---hhhHHHHHHHHHHHHHHHHHhcC----------------ceecCCCccceeeecCCcEEeeccc
Confidence             555544431 11   22222334469999999999999                9999999999999999999999999


Q ss_pred             cccccCCCC------CCccccCcccccccc----cccc-CCcceeeh--hHHHHHcCCCCCCCCCCCCCcccchh---cc
Q psy6542         174 LACDFSKKK------PHASVESDCILHGYI----KKLG-GPFVSAWQ--TRYAKLFPNRLELHPESGQSKPELIF---MD  237 (334)
Q Consensus       174 la~~~~~~~------~~~~~~t~~~~~~~v----~~~~-~~~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~---~~  237 (334)
                      .|.......      .....||+.||+||+    ...| ....|+|+  |+.-.|.+|+-||.-.+..  +.++.   .+
T Consensus      1380 sa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne--~aIMy~V~~g 1457 (1509)
T KOG4645|consen 1380 SAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNE--WAIMYHVAAG 1457 (1509)
T ss_pred             ceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccch--hHHHhHHhcc
Confidence            998665442      245689999999998    2344 44555666  5544445555566554432  22221   12


Q ss_pred             cccccccccccHhHHHHHHHhhccCchhhcC
Q psy6542         238 QIEEVSQDLITVKGEQCVQLKLTRDTRIVLT  268 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~  268 (334)
                      ....+|..++ ..|++++..++..||..|.+
T Consensus      1458 h~Pq~P~~ls-~~g~dFle~Cl~~dP~~Rw~ 1487 (1509)
T KOG4645|consen 1458 HKPQIPERLS-SEGRDFLEHCLEQDPKMRWT 1487 (1509)
T ss_pred             CCCCCchhhh-HhHHHHHHHHHhcCchhhhH
Confidence            2233333322 25666666666666666533

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.94  E-value=1.5e-25  Score=201.53  Aligned_cols=186  Identities=18%  Similarity=0.155  Sum_probs=145.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++...||+|.+..+++.||||++.+... .....+.+.+|+.+++.++||||        +++++++.+++.+|++|||
T Consensus         3 ~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~   74 (262)
T cd05572           3 VGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFI--------VKLYRTFKDKKYIYMLMEY   74 (262)
T ss_pred             CCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCE--------eeeeeeEEcCCccEEEEec
Confidence            35567899999999999999999987654 33355678899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +....... ..   ........++.|++.||.|||+++                ++|+||+|+||++++++.++|
T Consensus        75 ~~~~~L~~~l~~~-~~---l~~~~~~~~~~~i~~~l~~lH~~~----------------~~h~dl~~~nilv~~~~~~~l  134 (262)
T cd05572          75 CLGGELWTILRDR-GL---FDEYTARFYIACVVLAFEYLHNRG----------------IIYRDLKPENLLLDSNGYVKL  134 (262)
T ss_pred             CCCCcHHHHHhhc-CC---CCHHHHHHHHHHHHHHHHHHhhCC----------------cccCCCCHHHEEEcCCCCEEE
Confidence            9887 43332222 12   244555667789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-CCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK-PHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++....... .....+++.|++||+..  .....+|.|+   ++|+++ .+..||....
T Consensus       135 ~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~-~g~~p~~~~~  196 (262)
T cd05572         135 VDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELL-TGRPPFGEDD  196 (262)
T ss_pred             eeCCcccccCcccccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHH-hCCCCcCCCC
Confidence            9999998775542 23346788899999743  2245567777   556665 4566765544

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.94  E-value=1.6e-25  Score=201.85  Aligned_cols=184  Identities=15%  Similarity=0.116  Sum_probs=140.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc-------hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE-------SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~-------~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      .++.+.||+|.+..+++.||+|.+......       ....+.+.+|+++++.++||||        +++++++.+.+..
T Consensus        10 ~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~   81 (267)
T cd06628          10 SGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENI--------VQYLGSSLDADHL   81 (267)
T ss_pred             cCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCe--------eeEEEEEEeCCcc
Confidence            367889999999999999999998765431       1233567889999999999999        9999999999999


Q ss_pred             EEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          85 YIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +++|||++|+ +..+.... ..+   ....+..++.|++.||.|||+.+                ++||||+|+||++++
T Consensus        82 ~lv~e~~~~~~L~~~l~~~-~~l---~~~~~~~~~~~l~~~l~~lH~~~----------------ivH~di~p~nil~~~  141 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNY-GAF---EETLVRNFVRQILKGLNYLHNRG----------------IIHRDIKGANILVDN  141 (267)
T ss_pred             EEEEEecCCCCHHHHHHhc-cCc---cHHHHHHHHHHHHHHHHHHHhcC----------------cccccCCHHHEEEcC
Confidence            9999999887 44333321 122   34455567789999999999999                999999999999999


Q ss_pred             CCCEEEEecccccccCCCC--------CCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         164 HGHVRISDLGLACDFSKKK--------PHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~--------~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ++.++|+|||+++......        .....|+..|++||.... . ...+|+|+   ++|+++. +..||..
T Consensus       142 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~  214 (267)
T cd06628         142 KGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLT-GKHPFPD  214 (267)
T ss_pred             CCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhh-CCCCCCC
Confidence            9999999999998665321        112346778899997432 2 34566666   5556554 6667644

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.94  E-value=1.8e-25  Score=200.54  Aligned_cols=184  Identities=12%  Similarity=0.113  Sum_probs=138.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||++..+. +..+|+|.+......   ...+.+|+++++.++||||        +++++++..++.+|+||||+
T Consensus        14 ~G~~~~vy~~~~~~-~~~~a~K~~~~~~~~---~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~iv~e~~   81 (256)
T cd05114          14 SGQFGVVHLGKWRA-QIKVAIKAINEGAMS---EEDFIEEAKVMMKLSHPKL--------VQLYGVCTQQKPLYIVTEFM   81 (256)
T ss_pred             CCcCceEEEEEecc-CceEEEEecccCCcc---HHHHHHHHHHHHHCCCCCc--------eeEEEEEccCCCEEEEEEcC
Confidence            46667899998765 568999998754432   2356779999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..........   ......+.++.|++.||.|||+++                ++||||||+||++++++.+||+
T Consensus        82 ~~~~L~~~~~~~~~~---~~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dl~p~ni~i~~~~~~kl~  142 (256)
T cd05114          82 ENGCLLNYLRQRQGK---LSKDMLLSMCQDVCEGMEYLERNS----------------FIHRDLAARNCLVSSTGVVKVS  142 (256)
T ss_pred             CCCcHHHHHHhCccC---CCHHHHHHHHHHHHHHHHHHHHCC----------------ccccccCcceEEEcCCCeEEEC
Confidence            988 43332221112   244556777889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCc---cccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPHA---SVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~~~~---~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+++.........   ..++..|++||+.. .. ...+|+|+   ++|++++.+..||...+
T Consensus       143 d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~  206 (256)
T cd05114         143 DFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKS  206 (256)
T ss_pred             CCCCccccCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCC
Confidence            999998654333221   22345789999743 22 44566666   67777765777775443

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.94  E-value=2.6e-26  Score=209.13  Aligned_cols=186  Identities=19%  Similarity=0.207  Sum_probs=145.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.++.+++.||||.++.........+.+.+|+++++.++|+||        +++++++..++.+|+||||+
T Consensus        11 ~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~iv~e~~   82 (288)
T cd07833          11 EGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENI--------VNLKEAFRRKGRLYLVFEYV   82 (288)
T ss_pred             ccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCe--------eehhheEEECCEEEEEEecC
Confidence            4567789999999999999999998665544456678889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +++ ++.+.... ..+   ....++.++.|++.||.|||+.+                ++||||+|+||++++++.+||+
T Consensus        83 ~~~~l~~~~~~~-~~~---~~~~~~~~~~~i~~~l~~LH~~~----------------i~H~dl~~~ni~~~~~~~~kl~  142 (288)
T cd07833          83 ERTLLELLEASP-GGL---PPDAVRSYIWQLLQAIAYCHSHN----------------IIHRDIKPENILVSESGVLKLC  142 (288)
T ss_pred             CCCHHHHHHhcC-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHeEECCCCCEEEE
Confidence            998 43332221 222   45556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC---CCccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK---PHASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~---~~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||++.......   .....++..|++||+...  . ...+|+|+   ++|++ ..+.+||.+.+
T Consensus       143 d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l-~~g~~~~~~~~  206 (288)
T cd07833         143 DFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAEL-LDGEPLFPGDS  206 (288)
T ss_pred             eeecccccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHH-HhCCCCCCCCC
Confidence            999998765543   223456788999998422  2 34566676   45555 55666775543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.94  E-value=1.8e-25  Score=200.93  Aligned_cols=182  Identities=15%  Similarity=0.087  Sum_probs=137.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|... +++.||+|.+.....   ..+.+.+|+.+++.++|+||        +++++.+..++..|++|||+
T Consensus        16 ~g~~g~v~~~~~~-~~~~v~iK~~~~~~~---~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05072          16 AGQFGEVWMGYYN-NSTKVAVKTLKPGTM---SVQAFLEEANLMKTLQHDKL--------VRLYAVVTKEEPIYIITEYM   83 (261)
T ss_pred             CcCCceEEEEEec-CCceEEEEEccCCch---hHHHHHHHHHHHHhCCCCCe--------eeEEEEEcCCCCcEEEEecC
Confidence            4667789999865 467899999875433   24567889999999999999        99999999999999999999


Q ss_pred             CCC-hh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .|+ +. ++.......   ......+.++.|++.||.|||+.+                ++||||||+||++++++.++|
T Consensus        84 ~~~~L~~~l~~~~~~~---~~~~~~~~~~~~l~~~l~~LH~~~----------------i~H~dl~p~nili~~~~~~~l  144 (261)
T cd05072          84 AKGSLLDFLKSDEGGK---VLLPKLIDFSAQIAEGMAYIERKN----------------YIHRDLRAANVLVSESLMCKI  144 (261)
T ss_pred             CCCcHHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHHHCC----------------eeccccchhhEEecCCCcEEE
Confidence            887 43 332222112   244456677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCC---ccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPH---ASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       170 ~DFGla~~~~~~~~~---~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|||+++........   ...++..|++||....  ....+|+|+   ++|+++..+..||..
T Consensus       145 ~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~  207 (261)
T cd05072         145 ADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPG  207 (261)
T ss_pred             CCCccceecCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCC
Confidence            999999876543321   2233567899987432  234566666   667776657777644

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=3.5e-25  Score=200.85  Aligned_cols=185  Identities=16%  Similarity=0.153  Sum_probs=143.5

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC---CCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR---NEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~---h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .+++...||+|.+..+|+.||||.++...... ....+.+|+++++.++   |||+        +++++++..+..+|+|
T Consensus        10 ~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~e~~~l~~l~~~~~~~v--------i~~~~~~~~~~~~~lv   80 (277)
T cd06917          10 GRGAYGAVYRGKHVPTGRVVALKIINLDTPDD-DVSDIQREVALLSQLRQSQPPNI--------TKYYGSYLKGPRLWII   80 (277)
T ss_pred             eccCCceEEEEEEcCCCcEEEEEEecCCCCch-hHHHHHHHHHHHHHhccCCCCCe--------eeEeeeeeeCCEEEEE
Confidence            35677899999999999999999997654322 3346778999999997   9999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.|+ +..+....     .......+.++.|++.||.|||+.+                ++|+||+|+||++++++.
T Consensus        81 ~e~~~~~~L~~~~~~~-----~l~~~~~~~i~~~i~~~l~~lh~~~----------------i~H~dl~p~ni~i~~~~~  139 (277)
T cd06917          81 MEYAEGGSVRTLMKAG-----PIAEKYISVIIREVLVALKYIHKVG----------------VIHRDIKAANILVTNTGN  139 (277)
T ss_pred             EecCCCCcHHHHHHcc-----CCCHHHHHHHHHHHHHHHHHHHhCC----------------cccCCcCHHHEEEcCCCC
Confidence            9999888 44333221     2245566677889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC--CCccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK--PHASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ++|+|||++.......  .....|+..|++||....  . ...+|+|+   ++|+++. +..||.+..
T Consensus       140 ~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~-g~~p~~~~~  206 (277)
T cd06917         140 VKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMAT-GNPPYSDVD  206 (277)
T ss_pred             EEEccCCceeecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHh-CCCCCCCCC
Confidence            9999999998665443  233467888999997532  2 34566666   5566655 666775543

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.94  E-value=1.5e-25  Score=202.45  Aligned_cols=185  Identities=14%  Similarity=0.070  Sum_probs=138.6

Q ss_pred             CCCceEEEeceeCCCCC---cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGF---PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~---~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      ++..+.||+|.++.++.   .||+|.++....+ ...+.+..|+.+++.++||||        +++++++..++..|+||
T Consensus        14 ~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~   84 (267)
T cd05066          14 AGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTE-KQRRDFLSEASIMGQFDHPNI--------IHLEGVVTKSKPVMIVT   84 (267)
T ss_pred             ccCCCceEEEEEecCCCCceEEEEEECCCCCCH-HHHHHHHHHHHHHHhCCCCCc--------ceEEEEEecCCccEEEE
Confidence            45567899998875544   7999998764432 234578889999999999999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||++|+ +..+.......+   .....+.++.|++.||.|||+.+                ++||||||+||+++.++.+
T Consensus        85 e~~~~~~L~~~~~~~~~~~---~~~~~~~i~~~i~~~l~~lH~~~----------------i~h~dlkp~nili~~~~~~  145 (267)
T cd05066          85 EYMENGSLDAFLRKHDGQF---TVIQLVGMLRGIASGMKYLSDMG----------------YVHRDLAARNILVNSNLVC  145 (267)
T ss_pred             EcCCCCCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeehhhchhcEEECCCCeE
Confidence            999987 443333222222   44556677889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCCCc-----cccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKKPHA-----SVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       168 kl~DFGla~~~~~~~~~~-----~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|+|||++..........     ..++..|++||...  .....+|+|+   ++|+++..+..||..
T Consensus       146 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~  212 (267)
T cd05066         146 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWE  212 (267)
T ss_pred             EeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCccc
Confidence            999999998765433211     11245688888753  2344666676   667767656667644

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>KOG0607|consensus

Probab=99.94  E-value=2e-26  Score=204.35  Aligned_cols=221  Identities=15%  Similarity=0.193  Sum_probs=162.0

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEccCCC-
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-   94 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-   94 (334)
                      +|--|.+..||+.+|||++.+...  ..+.+..+|++++.+++ |+||        +++.++|+++..+|+|||-+.|| 
T Consensus        93 sVqtcv~i~t~~EYAVKiidKq~g--HsR~RvfREVe~f~~Cqgh~ni--------lqLiefFEdd~~FYLVfEKm~GGp  162 (463)
T KOG0607|consen   93 SVQTCVSIQTGKEYAVKIIDKQPG--HSRSRVFREVETFYQCQGHKNI--------LQLIEFFEDDTRFYLVFEKMRGGP  162 (463)
T ss_pred             eeeeeeeeccchhhhhhhhhcCCc--hHHHHHHHHHHHHHHhcCCccH--------HHHHHHhcccceEEEEEecccCch
Confidence            788899999999999999998743  34567888999999985 9999        99999999999999999999999 


Q ss_pred             -hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC---EEEE
Q psy6542          95 -KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH---VRIS  170 (334)
Q Consensus        95 -l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~---vkl~  170 (334)
                       +.+|..+.  .+.+..+..+..   .|+.||.|||++|                |.||||||+|||-.+.++   ||||
T Consensus       163 lLshI~~~~--~F~E~EAs~vvk---dia~aLdFlH~kg----------------IAHRDlKPENiLC~~pn~vsPvKiC  221 (463)
T KOG0607|consen  163 LLSHIQKRK--HFNEREASRVVK---DIASALDFLHTKG----------------IAHRDLKPENILCESPNKVSPVKIC  221 (463)
T ss_pred             HHHHHHHhh--hccHHHHHHHHH---HHHHHHHHHhhcC----------------cccccCCccceeecCCCCcCceeee
Confidence             66665544  566655555544   9999999999999                999999999999976654   8999


Q ss_pred             ecccccccCCC---------CCCccccCccccccccc------cccCCccee-eh--hHHHHHcCCCCCCCCCCCCC---
Q psy6542         171 DLGLACDFSKK---------KPHASVESDCILHGYIK------KLGGPFVSA-WQ--TRYAKLFPNRLELHPESGQS---  229 (334)
Q Consensus       171 DFGla~~~~~~---------~~~~~~~t~~~~~~~v~------~~~~~~~~~-w~--~~~~~l~~~~~~~~~~~~~~---  229 (334)
                      ||.|+......         ...+.+|+..||+|||-      ...|.+..| |+  ++.+.|..+-+||.|.-...   
T Consensus       222 DfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGW  301 (463)
T KOG0607|consen  222 DFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGW  301 (463)
T ss_pred             ccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCc
Confidence            99998643221         12456788899999982      233666555 55  45555566677887654311   


Q ss_pred             ------------cccchhcccccccccccccH---hHHHHHHHhhccCchhhcCC
Q psy6542         230 ------------KPELIFMDQIEEVSQDLITV---KGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       230 ------------~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~p~~r~~~  269 (334)
                                  .++.| .+..+++|..-|--   ..++.+...+.+|+..|+..
T Consensus       302 drGe~Cr~CQ~~LFesI-QEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa  355 (463)
T KOG0607|consen  302 DRGEVCRVCQNKLFESI-QEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSA  355 (463)
T ss_pred             cCCCccHHHHHHHHHHH-hccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhh
Confidence                        22222 23344455444432   44556666677888877764

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.94  E-value=1.8e-25  Score=205.39  Aligned_cols=184  Identities=14%  Similarity=0.155  Sum_probs=143.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++...||++.+..+++.||||.+.......  ...+.+|+.+++.++|+|+        +++++.+..+...|+||||
T Consensus        29 g~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~--~~~~~~e~~~l~~~~h~~v--------~~~~~~~~~~~~~~lv~e~   98 (296)
T cd06654          29 GQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPNI--------VNYLDSYLVGDELWVVMEY   98 (296)
T ss_pred             cCCCCeEEEEEEECCCCcEEEEEEEecCCcch--HHHHHHHHHHHHhCCCCCE--------eeEEEEEEeCCEEEEeecc
Confidence            45677899999999999999999998655432  3557789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +..+....  .+   .....+.++.|++.||.|||+.+                |+||||||+||+++.++.++|
T Consensus        99 ~~~~~L~~~~~~~--~~---~~~~~~~i~~ql~~aL~~LH~~g----------------i~H~dLkp~Nill~~~~~~kl  157 (296)
T cd06654          99 LAGGSLTDVVTET--CM---DEGQIAAVCRECLQALEFLHSNQ----------------VIHRDIKSDNILLGMDGSVKL  157 (296)
T ss_pred             cCCCCHHHHHHhc--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEEcCCCCEEE
Confidence            9988 44333221  12   34455677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++.......  .....+++.|++||....  .+..+|+|+   ++|++ ..+..||....
T Consensus       158 ~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l-~~g~~pf~~~~  220 (296)
T cd06654         158 TDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEM-IEGEPPYLNEN  220 (296)
T ss_pred             CccccchhccccccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHH-HhCCCCCCCCC
Confidence            9999998654432  223467888999997432  245667777   45555 55666775543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.94  E-value=1.8e-25  Score=204.61  Aligned_cols=189  Identities=12%  Similarity=0.035  Sum_probs=140.4

Q ss_pred             CCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++.+.||++...     .++..||+|.++....  ...+.+.+|+++++.++|+||        +++++++..++..++
T Consensus        15 ~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~l   84 (291)
T cd05094          15 EGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTL--AARKDFQREAELLTNLQHEHI--------VKFYGVCGDGDPLIM   84 (291)
T ss_pred             ccCCCeEEEeEeeccCCCCcceeeEEEecCCccH--HHHHHHHHHHHHHhcCCCCCc--------ceEEEEEccCCceEE
Confidence            3567889988753     4566799999874433  233567889999999999999        999999999999999


Q ss_pred             EEEccCCC-hh-HHhhhhhh-----------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeC
Q psy6542          87 IGVRQSGP-KD-QISRSKIN-----------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRD  153 (334)
Q Consensus        87 vmEy~~g~-l~-~l~~~~~~-----------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrD  153 (334)
                      ||||++|+ +. ++......           ..........+.++.||+.||.|||+++                ++|||
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~----------------i~H~d  148 (291)
T cd05094          85 VFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQH----------------FVHRD  148 (291)
T ss_pred             EEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCC----------------eeecc
Confidence            99999887 43 33222100           0011245566788889999999999999                99999


Q ss_pred             CCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         154 LKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       154 lKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||+||++++++.++|+|||+++.......    ....++..|++||... .. ...+|+|+   ++|+++..+..||..
T Consensus       149 lkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~  228 (291)
T cd05094         149 LATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQ  228 (291)
T ss_pred             cCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999986544321    2234567899999742 22 44577777   667776657777655


Q ss_pred             CC
Q psy6542         225 ES  226 (334)
Q Consensus       225 ~~  226 (334)
                      .+
T Consensus       229 ~~  230 (291)
T cd05094         229 LS  230 (291)
T ss_pred             CC
Confidence            43

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.94  E-value=5.5e-25  Score=200.66  Aligned_cols=251  Identities=15%  Similarity=0.073  Sum_probs=164.6

Q ss_pred             CCCceEEEece----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEE
Q psy6542          12 RVSKWRVKPPS----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~   85 (334)
                      +++...||+|.    .+.++..||+|.++...... ....+.+|+++++.++|||+        +++++++...  ..++
T Consensus        14 ~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~   84 (284)
T cd05079          14 EGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGN-HIADLKKEIEILRNLYHENI--------VKYKGICTEDGGNGIK   84 (284)
T ss_pred             CCCceeEEEEEEccCCCCccceEEEEEcCccccHH-HHHHHHHHHHHHHhCCCCCe--------eeeeeEEecCCCCceE
Confidence            45666898886    46789999999987654332 34568899999999999999        9999988865  5689


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +..+.......   ......+.++.|++.||.|||+++                ++||||||+||+++.+
T Consensus        85 lv~e~~~g~~L~~~l~~~~~~---~~~~~~~~i~~~i~~aL~~lH~~g----------------i~H~dlkp~Nil~~~~  145 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNKNK---INLKQQLKYAVQICKGMDYLGSRQ----------------YVHRDLAARNVLVESE  145 (284)
T ss_pred             EEEEccCCCCHHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHHHCC----------------eeecccchheEEEcCC
Confidence            999999888 54443322112   244555677889999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCC-----CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         165 GHVRISDLGLACDFSKKKP-----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      +.++|+|||+++.......     ....++..|++||+..  ..+..+|+|+   ++|++++... +.....      ..
T Consensus       146 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~-~~~~~~------~~  218 (284)
T cd05079         146 HQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCD-SESSPM------TL  218 (284)
T ss_pred             CCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCC-CCcccc------ch
Confidence            9999999999986654321     2234566788999743  2345677777   6667665332 211110      00


Q ss_pred             hcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         235 FMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                      ......+......    .......+..      ....+.....+..+.+  +...|...+|..|+ +.++++.+..
T Consensus       219 ~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~--li~~~l~~~p~~Rpt~~~il~~l~~  282 (284)
T cd05079         219 FLKMIGPTHGQMT----VTRLVRVLEE------GKRLPRPPNCPEEVYQ--LMRKCWEFQPSKRTTFQNLIEGFEA  282 (284)
T ss_pred             hhhhccccccccc----HHHHHHHHHc------CccCCCCCCCCHHHHH--HHHHHccCCcccCcCHHHHHHHHHh
Confidence            0111100000111    0011111111      0011112334444445  88889999999999 8888888764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.94  E-value=1.4e-25  Score=201.52  Aligned_cols=234  Identities=13%  Similarity=0.025  Sum_probs=164.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.++. +..||+|.+......  ....+..|+++++.++|+||        +++++++.+.+.+|+||||+
T Consensus        16 ~g~~~~vy~~~~~~-~~~~~~k~~~~~~~~--~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~lv~e~~   84 (261)
T cd05148          16 SGYFGEVWEGLWKN-RVRVAIKILKSDDLL--KQQDFQKEVQALKRLRHKHL--------ISLFAVCSVGEPVYIITELM   84 (261)
T ss_pred             cCCCccEEEeEecC-CCcEEEEeccccchh--hHHHHHHHHHHHhcCCCcch--------hheeeeEecCCCeEEEEeec
Confidence            46677999999988 999999998865432  23457789999999999999        99999999999999999999


Q ss_pred             CCC-hh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +++ +. ++.......+   .....+.++.|++.||.|||+++                ++||||||+||++++++.+||
T Consensus        85 ~~~~L~~~~~~~~~~~~---~~~~~~~~~~~i~~al~~lH~~~----------------i~h~dl~~~nilv~~~~~~kl  145 (261)
T cd05148          85 EKGSLLAFLRSPEGQVL---PVASLIDMACQVAEGMAYLEEQN----------------SIHRDLAARNILVGEDLVCKV  145 (261)
T ss_pred             ccCCHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccccCcceEEEcCCceEEE
Confidence            987 43 3332222222   44556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC--CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDFSKKKP--HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||++........  ....++..|++||+.. .. ...+|+|+   ++|+++..+..||.+.+.......+        
T Consensus       146 ~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~--------  217 (261)
T cd05148         146 ADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQI--------  217 (261)
T ss_pred             ccccchhhcCCccccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHH--------
Confidence            99999987654432  2223456788999743 23 34556666   6667766678787554311111100        


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHH
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMA  308 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~  308 (334)
                                       ...  .+.    +.....+.++.+  +..+|...+|..|| +.++++.|.
T Consensus       218 -----------------~~~--~~~----~~~~~~~~~~~~--~i~~~l~~~p~~Rpt~~~l~~~L~  259 (261)
T cd05148         218 -----------------TAG--YRM----PCPAKCPQEIYK--IMLECWAAEPEDRPSFKALREELD  259 (261)
T ss_pred             -----------------HhC--CcC----CCCCCCCHHHHH--HHHHHcCCCchhCcCHHHHHHHHh
Confidence                             000  001    111233344444  77788888888888 777777664

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.94  E-value=7.8e-26  Score=202.81  Aligned_cols=186  Identities=17%  Similarity=0.168  Sum_probs=142.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++.+.||++.+..+|+.||+|++..... .....+.+.+|+++++.++|||+        +++++.+..++..|++|||
T Consensus         3 ~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i--------~~~~~~~~~~~~~~lv~e~   74 (265)
T cd05579           3 KGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYV--------VKLYYSFQGKKNLYLVMEY   74 (265)
T ss_pred             CCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcch--------hHHHHheecCcEEEEEEec
Confidence            46778999999999999999999976544 23345578889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +..+.... ..   ......+.++.|++.||.|||+.+                ++|+||+|+||++++++.++|
T Consensus        75 ~~~~~L~~~l~~~-~~---~~~~~~~~i~~qi~~~L~~lH~~~----------------i~H~di~~~nil~~~~~~~~l  134 (265)
T cd05579          75 LPGGDLASLLENV-GS---LDEDVARIYIAEIVLALEYLHSNG----------------IIHRDLKPDNILIDSNGHLKL  134 (265)
T ss_pred             CCCCcHHHHHHHc-CC---CCHHHHHHHHHHHHHHHHHHHHcC----------------eecCCCCHHHeEEcCCCCEEE
Confidence            9887 54443322 12   245556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCC----------CCCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKK----------KPHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~----------~~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++......          ......++..|++||+...  ....+|+|+   ++|++ ..+..||....
T Consensus       135 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l-~~g~~p~~~~~  205 (265)
T cd05579         135 TDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEF-LVGIPPFHGET  205 (265)
T ss_pred             EecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHH-HhCCCCCCCCC
Confidence            999998855433          1223456778899997432  233556666   45555 44566665443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.93  E-value=2.5e-25  Score=201.17  Aligned_cols=182  Identities=12%  Similarity=0.119  Sum_probs=136.9

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecC------Ce
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEP------NS   83 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~------~~   83 (334)
                      ..++.+.||+|..+.+++.||||.+......   ...+..|+.+++.+ +|+|+        +++++++...      ..
T Consensus        15 g~g~~g~vy~~~~~~~~~~~aik~~~~~~~~---~~~~~~e~~~l~~~~~h~~i--------~~~~~~~~~~~~~~~~~~   83 (272)
T cd06637          15 GNGTYGQVYKGRHVKTGQLAAIKVMDVTGDE---EEEIKQEINMLKKYSHHRNI--------ATYYGAFIKKNPPGMDDQ   83 (272)
T ss_pred             eecCCeEEEEEEEcCCCcEEEEEEEEcCCcc---HHHHHHHHHHHHHhcCCCCe--------eeEeeEEeecCCCCCCcE
Confidence            4567889999999999999999999765432   23566799999998 69999        9999998742      46


Q ss_pred             EEEEEEccCCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          84 HYIIGVRQSGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      +|++|||+.++ +..+... ....+   .......++.|++.||.|||+++                |+||||||+||++
T Consensus        84 ~~iv~e~~~~~~L~~~l~~~~~~~l---~~~~~~~~~~qi~~~l~~LH~~~----------------ivh~dl~~~nili  144 (272)
T cd06637          84 LWLVMEFCGAGSVTDLIKNTKGNTL---KEEWIAYICREILRGLSHLHQHK----------------VIHRDIKGQNVLL  144 (272)
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CccCCCCHHHEEE
Confidence            89999999987 4333232 21222   34445667789999999999999                9999999999999


Q ss_pred             CCCCCEEEEecccccccCCC--CCCccccCcccccccccc------ccCC-cceeeh---hHHHHHcCCCCCCC
Q psy6542         162 DEHGHVRISDLGLACDFSKK--KPHASVESDCILHGYIKK------LGGP-FVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       162 ~~~~~vkl~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~------~~~~-~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      ++++.++|+|||++......  ......|+..|++||+..      ..++ .+|+|+   ++|+++. +..||.
T Consensus       145 ~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~-g~~p~~  217 (272)
T cd06637         145 TENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAE-GAPPLC  217 (272)
T ss_pred             CCCCCEEEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHh-CCCCcc
Confidence            99999999999999865433  233456788999999842      2233 466666   5666655 455653

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG0194|consensus

Probab=99.93  E-value=3.3e-26  Score=218.02  Aligned_cols=187  Identities=15%  Similarity=0.039  Sum_probs=142.9

Q ss_pred             CCCceEEEeceeCCCCC---c-EEEEEeeCCC-cchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGF---P-IQIGMLRHRP-HESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~---~-vAIK~l~~~~-~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +|-++.||++..+..+.   . ||||..+... ......+.+.+|+++|++++||||        |++||+.....++||
T Consensus       167 eGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NV--------Vr~yGVa~~~~Pl~i  238 (474)
T KOG0194|consen  167 EGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNV--------VRFYGVAVLEEPLML  238 (474)
T ss_pred             cccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCE--------EEEEEEEcCCCccEE
Confidence            46677899888876433   3 8999999643 345566788999999999999999        999999999999999


Q ss_pred             EEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          87 IGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        87 vmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      |||+|.||  .+++..... ..   ....-+.++++.+.||+|||+++                +|||||-..|+|++.+
T Consensus       239 vmEl~~gGsL~~~L~k~~~-~v---~~~ek~~~~~~AA~Gl~YLh~k~----------------~IHRDIAARNcL~~~~  298 (474)
T KOG0194|consen  239 VMELCNGGSLDDYLKKNKK-SL---PTLEKLRFCYDAARGLEYLHSKN----------------CIHRDIAARNCLYSKK  298 (474)
T ss_pred             EEEecCCCcHHHHHHhCCC-CC---CHHHHHHHHHHHHhHHHHHHHCC----------------CcchhHhHHHheecCC
Confidence            99999999  455544331 12   34444567789999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCCCc-cc-cCcccccccccccc-C-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKKPHA-SV-ESDCILHGYIKKLG-G-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~~~-~~-~t~~~~~~~v~~~~-~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.+||+||||++.-....... .. -...|++||....+ | ..+|+|+   ++||.+..+..||.+..
T Consensus       299 ~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~  367 (474)
T KOG0194|consen  299 GVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMK  367 (474)
T ss_pred             CeEEeCccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCC
Confidence            999999999998654222111 11 24678889975433 4 5666666   67777776666776655

>KOG0669|consensus

Probab=99.93  E-value=7.7e-28  Score=207.16  Aligned_cols=188  Identities=18%  Similarity=0.204  Sum_probs=144.3

Q ss_pred             ceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--------CCeEEE
Q psy6542          15 KWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--------PNSHYI   86 (334)
Q Consensus        15 ~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--------~~~~~i   86 (334)
                      ...|++|+++.+|+.||+|.+-........-....+|+.+|+.|+|+|+        +.+...+.+        ...+|+
T Consensus        30 fgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv--------~nliEic~tk~Tp~~r~r~t~yl  101 (376)
T KOG0669|consen   30 FGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENV--------VNLIEICRTKATPTNRDRATFYL  101 (376)
T ss_pred             HHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhH--------HHHHHHHhhccCCcccccceeee
Confidence            3479999999999999999876544433334445669999999999998        655544432        235899


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||++|+.++.-+......+++....+.++.   ++.+||.|+|...                |+|||+|++|+||+.+|.
T Consensus       102 Vf~~cehDLaGlLsn~~vr~sls~Ikk~Mk---~Lm~GL~~iHr~k----------------ilHRDmKaaNvLIt~dgi  162 (376)
T KOG0669|consen  102 VFDFCEHDLAGLLSNRKVRFSLSEIKKVMK---GLMNGLYYIHRNK----------------ILHRDMKAANVLITKDGI  162 (376)
T ss_pred             eHHHhhhhHHHHhcCccccccHHHHHHHHH---HHHHHHHHHHHhh----------------HHhhcccHhhEEEcCCce
Confidence            999999997777676666776656655555   9999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCCCcc------ccCccccccccc---cccCCcceeeh--hHHHHHcCCCCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKPHAS------VESDCILHGYIK---KLGGPFVSAWQ--TRYAKLFPNRLELHPESGQS  229 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~~~------~~t~~~~~~~v~---~~~~~~~~~w~--~~~~~l~~~~~~~~~~~~~~  229 (334)
                      +||+|||+|+.+........      .-|.+|.+||..   +.++++-|+|.  |+...|+++.+-+.+.+...
T Consensus       163 lklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqq  236 (376)
T KOG0669|consen  163 LKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQ  236 (376)
T ss_pred             EEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHH
Confidence            99999999987765543222      238899999974   23344555555  88888888888887777543

>KOG1035|consensus

Probab=99.93  E-value=3.1e-26  Score=231.46  Aligned_cols=178  Identities=20%  Similarity=0.172  Sum_probs=138.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-----------
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-----------   80 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-----------   80 (334)
                      ||+.+.||+++++-+|+.||||.|.... .........+|+.++++|+||||        |++|..+.+           
T Consensus       489 kGGFG~VvkVRNKlDGr~YAIKKIpl~~-s~~~~skI~rEVk~LArLnHpNV--------VRYysAWVEs~~~~~~~ei~  559 (1351)
T KOG1035|consen  489 KGGFGSVVKVRNKLDGREYAIKKIPLKA-SDKLYSKILREVKLLARLNHPNV--------VRYYSAWVESTAELTVLEIV  559 (1351)
T ss_pred             CCCCceEEEEeecccchhhhhhhccCch-HHHHHHHHHHHHHHHhhcCCcce--------eeeehhhhccCCcccccccc
Confidence            7899999999999999999999999887 44455667789999999999999        666654410           


Q ss_pred             --------------------------------------------------------------------------------
Q psy6542          81 --------------------------------------------------------------------------------   80 (334)
Q Consensus        81 --------------------------------------------------------------------------------   80 (334)
                                                                                                      
T Consensus       560 ~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~e~~  639 (1351)
T KOG1035|consen  560 ASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDSEGS  639 (1351)
T ss_pred             ccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccccCCc
Confidence                                                                                            


Q ss_pred             --------------------C--------CeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy6542          81 --------------------P--------NSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA  131 (334)
Q Consensus        81 --------------------~--------~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~  131 (334)
                                          .        ..+||-||||+.. +..++.... ..  .....+|.++.||+.||.|+|++
T Consensus       640 ~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~-~~--~~~d~~wrLFreIlEGLaYIH~~  716 (1351)
T KOG1035|consen  640 VILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNH-FN--SQRDEAWRLFREILEGLAYIHDQ  716 (1351)
T ss_pred             cccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcc-cc--hhhHHHHHHHHHHHHHHHHHHhC
Confidence                                0        2369999999999 444444322 11  15677899999999999999999


Q ss_pred             CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccC-------------------CC-CCCccccCcc
Q psy6542         132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFS-------------------KK-KPHASVESDC  191 (334)
Q Consensus       132 ~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~-------------------~~-~~~~~~~t~~  191 (334)
                      |                ||||||||.||++++++.|||+|||+|+...                   .. ...+..||..
T Consensus       717 g----------------iIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTal  780 (1351)
T KOG1035|consen  717 G----------------IIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTAL  780 (1351)
T ss_pred             c----------------eeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceee
Confidence            9                9999999999999999999999999998621                   00 1234578999


Q ss_pred             cccccccc--c--cCC-cceeeh---hHHHHHcC
Q psy6542         192 ILHGYIKK--L--GGP-FVSAWQ---TRYAKLFP  217 (334)
Q Consensus       192 ~~~~~v~~--~--~~~-~~~~w~---~~~~~l~~  217 (334)
                      |++||+..  .  .|. +.|+.+   ++|||+.+
T Consensus       781 YvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yP  814 (1351)
T KOG1035|consen  781 YVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYP  814 (1351)
T ss_pred             eecHHHhcccccccccchhhhHHHHHHHHHHhcc
Confidence            99999832  1  244 455555   66777664

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.93  E-value=4.9e-26  Score=213.02  Aligned_cols=186  Identities=21%  Similarity=0.168  Sum_probs=141.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC-----CeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP-----NSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~-----~~~~i   86 (334)
                      +++...||+|.+..+|+.||||.++.........+.+.+|+.+++.++|+||        +++++++...     ..+|+
T Consensus        15 ~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni--------~~~~~~~~~~~~~~~~~~~l   86 (337)
T cd07858          15 RGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENV--------IAIKDIMPPPHREAFNDVYI   86 (337)
T ss_pred             cCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCc--------cchHHheecccccccCcEEE
Confidence            4667899999999999999999998654433334566789999999999999        9999887644     35899


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||+.+++....... ..+   .......++.|++.||.|||+++                ++||||||+||+++.++.
T Consensus        87 v~e~~~~~L~~~~~~~-~~l---~~~~~~~i~~qi~~aL~~LH~~~----------------i~H~dlkp~Nil~~~~~~  146 (337)
T cd07858          87 VYELMDTDLHQIIRSS-QTL---SDDHCQYFLYQLLRGLKYIHSAN----------------VLHRDLKPSNLLLNANCD  146 (337)
T ss_pred             EEeCCCCCHHHHHhcC-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EecCCCCHHHEEEcCCCC
Confidence            9999988754332221 222   45556677889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC--CCccccCcccccccccc---ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK--PHASVESDCILHGYIKK---LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~---~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +||+|||+++......  .....++..|++||+..   .....+|+|+   ++|++ .++.+||.+.+
T Consensus       147 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l-~~g~~pf~~~~  213 (337)
T cd07858         147 LKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAEL-LGRKPLFPGKD  213 (337)
T ss_pred             EEECcCccccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHH-HcCCCCCCCCC
Confidence            9999999998664432  23345678899999743   2345666666   45555 56677776543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=2.1e-25  Score=200.24  Aligned_cols=235  Identities=11%  Similarity=0.024  Sum_probs=163.2

Q ss_pred             CCCceEEEeceeCCCC---CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLG---FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~---~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++.+.||+|....++   ..||+|.+...... ...+.+.+|+++++.++|+|+        +++++++. .+.+++||
T Consensus         5 ~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~-~~~~~~v~   74 (257)
T cd05060           5 HGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA-AGKKEFLREASVMAQLDHPCI--------VRLIGVCK-GEPLMLVM   74 (257)
T ss_pred             ccCceeEEEeEeeccCCCcceEEEEecccccch-HHHHHHHHHHHHHHhcCCCCe--------eeEEEEEc-CCceEEEE
Confidence            4778899999876655   78999999866554 344567889999999999999        99999876 45689999


Q ss_pred             EccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          89 VRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        89 Ey~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||+.++ + +++....     .......+.++.|++.||.|||+.+                ++||||||+||++++++.
T Consensus        75 e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lh~~~----------------i~H~di~p~nili~~~~~  133 (257)
T cd05060          75 ELAPLGPLLKYLKKRR-----EIPVSDLKELAHQVAMGMAYLESKH----------------FVHRDLAARNVLLVNRHQ  133 (257)
T ss_pred             EeCCCCcHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHhhcC----------------eeccCcccceEEEcCCCc
Confidence            999887 4 3332222     2245566778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCCCc-----cccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         167 VRISDLGLACDFSKKKPHA-----SVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~~-----~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                      +||+|||+++.........     ..++..|++||...  .....+|+|+   ++|+++..+.+||...+..   +.   
T Consensus       134 ~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~---~~---  207 (257)
T cd05060         134 AKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGA---EV---  207 (257)
T ss_pred             EEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHH---HH---
Confidence            9999999998665443211     11234688898743  2244667777   6677766577776433210   00   


Q ss_pred             ccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         237 DQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                        ........   +.    +.....+..+.+  +..+|...+|..|| +.++++.+.+.
T Consensus       208 ------------------~~~~~~~~---~~----~~~~~~~~~l~~--li~~cl~~~p~~Rp~~~~l~~~l~~~  255 (257)
T cd05060         208 ------------------IAMLESGE---RL----PRPEECPQEIYS--IMLSCWKYRPEDRPTFSELESTFRRD  255 (257)
T ss_pred             ------------------HHHHHcCC---cC----CCCCCCCHHHHH--HHHHHhcCChhhCcCHHHHHHHHHhc
Confidence                              00000000   00    111233344445  77888888899999 77777777653

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.9e-25  Score=199.26  Aligned_cols=185  Identities=14%  Similarity=0.108  Sum_probs=144.1

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      ..++.+.||+|.+..+++.+|+|.+.....+  ..+.+.+|+++++.++|||+        +++++++.+++.+|++|||
T Consensus        12 ~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~e~~~l~~~~h~~i--------~~~~~~~~~~~~~~l~~e~   81 (262)
T cd06613          12 GSGTYGDVYKARDIATGELVAIKVIKLEPGD--DFEIIQQEISMLKECRHPNI--------VAYFGSYLRRDKLWIVMEY   81 (262)
T ss_pred             cCCCceEEEEeEecCCCCEEEEEEEEcCchh--hHHHHHHHHHHHHhCCCCCh--------hceEEEEEeCCEEEEEEeC
Confidence            4677889999999999999999999865443  34567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.......+   ....++.++.|++.||.|||+.+                ++|+||||+||++++++.++|
T Consensus        82 ~~~~~l~~~~~~~~~~l---~~~~~~~~~~ql~~~l~~lh~~~----------------i~h~dl~p~ni~i~~~~~~~l  142 (262)
T cd06613          82 CGGGSLQDIYQVTRGPL---SELQIAYVCRETLKGLAYLHETG----------------KIHRDIKGANILLTEDGDVKL  142 (262)
T ss_pred             CCCCcHHHHHHhhccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ceecCCChhhEEECCCCCEEE
Confidence            9988 544433221233   44556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCcccccccccc-----ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKK-----LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-----~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||++.......  .....++..|++||+..     .....+|+|+   ++|+++ ++.+||...
T Consensus       143 ~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~-tg~~p~~~~  207 (262)
T cd06613         143 ADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELA-ELQPPMFDL  207 (262)
T ss_pred             CccccchhhhhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHH-hCCCCCCCC
Confidence            9999998665432  23345778899999742     2234566666   555554 456666543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.93  E-value=1.5e-25  Score=204.88  Aligned_cols=185  Identities=15%  Similarity=0.087  Sum_probs=140.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.++.+|+.||||.+.....+. ....+.+|+++++.++|+||        +++++++..++..|+||||+
T Consensus        15 ~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~e~~~l~~l~h~ni--------~~~~~~~~~~~~~~lv~e~~   85 (291)
T cd07870          15 EGSYATVYKGISRINGQLVALKVISMKTEEG-VPFTAIREASLLKGLKHANI--------VLLHDIIHTKETLTFVFEYM   85 (291)
T ss_pred             ecCCEEEEEEEEcCCCcEEEEEEecccCcCC-CcHHHHHHHHHHHhcCCCCE--------eEEEEEEecCCeEEEEEecc
Confidence            4566799999999999999999997654322 23355679999999999999        99999999999999999999


Q ss_pred             CCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .+++ +.+.... ...   .......++.|++.||.|||+.+                ++||||||+||+++.++.++|+
T Consensus        86 ~~~l~~~~~~~~-~~~---~~~~~~~~~~qi~~~L~~lH~~~----------------i~H~dlkp~Nil~~~~~~~~l~  145 (291)
T cd07870          86 HTDLAQYMIQHP-GGL---HPYNVRLFMFQLLRGLAYIHGQH----------------ILHRDLKPQNLLISYLGELKLA  145 (291)
T ss_pred             cCCHHHHHHhCC-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCChHHEEEcCCCcEEEe
Confidence            8774 3332221 122   23344566779999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+++......  .....++..|++||+...  . ...+|+|+   ++|+++ ++..||.+.+
T Consensus       146 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~-~g~~~f~~~~  208 (291)
T cd07870         146 DFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEML-QGQPAFPGVS  208 (291)
T ss_pred             ccccccccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHH-hCCCCCCCch
Confidence            999998543322  233446788999997532  2 34566677   555554 5666776544

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.93  E-value=9.9e-26  Score=205.84  Aligned_cols=240  Identities=10%  Similarity=-0.012  Sum_probs=164.0

Q ss_pred             CCCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEE
Q psy6542          11 SRVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        11 ~~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      .+++...||+|.+.     .++..||||.++.... ....+.+.+|+.++++++|||+        +++++++.+++.+|
T Consensus        14 g~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~ei~~l~~l~h~~i--------v~~~~~~~~~~~~~   84 (288)
T cd05050          14 GQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS-ADMQADFQREAALMAEFDHPNI--------VKLLGVCAVGKPMC   84 (288)
T ss_pred             cccccccEEEEEEcccCCCCcceeEEEEecCCCcC-HHHHHHHHHHHHHHHhcCCCch--------heEEEEEcCCCccE
Confidence            35677899999875     3788999999875433 3344568889999999999999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhh------------------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKIN------------------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSV  146 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~------------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~  146 (334)
                      ++|||+.++ +.........                  ..........+.++.|++.||.|||+++              
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~--------------  150 (288)
T cd05050          85 LLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERK--------------  150 (288)
T ss_pred             EEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC--------------
Confidence            999999987 4333221110                  0112244556778889999999999999              


Q ss_pred             CcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcC
Q psy6542         147 PCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFP  217 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~  217 (334)
                        ++||||||+||++++++.++|+|||++........    .....+..|++||+.. .. ...+|+|+   ++|+++..
T Consensus       151 --i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~  228 (288)
T cd05050         151 --FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSY  228 (288)
T ss_pred             --eecccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhC
Confidence              99999999999999999999999999986543321    1122345688898742 22 44566677   66776655


Q ss_pred             CCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhccccc
Q psy6542         218 NRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAH  297 (334)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  297 (334)
                      +..||.+.+..   +                     .+ ..+...  ....    .....+.++.+  +..||...+|..
T Consensus       229 ~~~p~~~~~~~---~---------------------~~-~~~~~~--~~~~----~~~~~~~~l~~--li~~~l~~~p~~  275 (288)
T cd05050         229 GMQPYYGMAHE---E---------------------VI-YYVRDG--NVLS----CPDNCPLELYN--LMRLCWSKLPSD  275 (288)
T ss_pred             CCCCCCCCCHH---H---------------------HH-HHHhcC--CCCC----CCCCCCHHHHH--HHHHHcccCccc
Confidence            65565433210   0                     00 011000  0001    11223344455  888999999999


Q ss_pred             ch-hHHHHHHHH
Q psy6542         298 KC-SQELLGSMA  308 (334)
Q Consensus       298 r~-~~~lL~~l~  308 (334)
                      |+ +.++++.+.
T Consensus       276 Rpt~~el~~~l~  287 (288)
T cd05050         276 RPSFASINRILQ  287 (288)
T ss_pred             CCCHHHHHHHhh
Confidence            99 777777664

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=2.6e-25  Score=200.11  Aligned_cols=184  Identities=15%  Similarity=0.058  Sum_probs=138.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.... ++.||||.++.....   .+.+.+|+++++.++|+|+        +++++++..++..|++|||+
T Consensus        16 ~g~~~~v~~~~~~~-~~~v~iK~~~~~~~~---~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05068          16 AGQFGEVWEGLWNN-TTPVAVKTLKPGTMD---PKDFLAEAQIMKKLRHPKL--------IQLYAVCTLEEPIYIVTELM   83 (261)
T ss_pred             ccCCccEEEEEecC-CeEEEEEeeCCCccc---HHHHHHHHHHHHHCCCCCc--------cceeEEEecCCCeeeeeecc
Confidence            45566899988654 578999999865432   3457789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +.........  ..........++.|++.||.|||+.+                ++||||||+||++++++.++|+
T Consensus        84 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dl~p~Nil~~~~~~~~l~  145 (261)
T cd05068          84 KYGSLLEYLQGGAG--RALKLPQLIDMAAQVASGMAYLEAQN----------------YIHRDLAARNVLVGENNICKVA  145 (261)
T ss_pred             cCCcHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHhCC----------------eeeccCCcceEEEcCCCCEEEC
Confidence            776 4333222110  11244556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCcccc---Ccccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPHASVE---SDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~---t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||+++...........+   +..|++||+..  .....+|+|+   ++|+++..+..||.+.
T Consensus       146 dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  208 (261)
T cd05068         146 DFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGM  208 (261)
T ss_pred             CcceEEEccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC
Confidence            999998776443322222   34688999743  2244677777   6777777677777543

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.93  E-value=2.5e-25  Score=202.33  Aligned_cols=185  Identities=15%  Similarity=0.061  Sum_probs=137.1

Q ss_pred             CCCCceEEEeceeCCCCCc----EEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFP----IQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~----vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      ..++...||+|....+|..    ||+|+++.... ....+.+.+|+.+++.++|+||        +++++++... ..++
T Consensus        16 g~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~-~~~l   85 (279)
T cd05109          16 GSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTS-PKANKEILDEAYVMAGVGSPYV--------CRLLGICLTS-TVQL   85 (279)
T ss_pred             CCCCCceEEEEEEecCCCccceEEEEEEecCCCC-HHHHHHHHHHHHHHHhcCCCCC--------ceEEEEEcCC-CcEE
Confidence            4577889999998877774    89999875443 2334567889999999999999        9999988754 5789


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +|||+++| +..........+   .....+.++.|++.||.|||+++                ++||||||+|||+++++
T Consensus        86 ~~~~~~~g~l~~~l~~~~~~~---~~~~~~~~~~qi~~~L~~lH~~~----------------iiH~dlkp~Nil~~~~~  146 (279)
T cd05109          86 VTQLMPYGCLLDYVRENKDRI---GSQDLLNWCVQIAKGMSYLEEVR----------------LVHRDLAARNVLVKSPN  146 (279)
T ss_pred             EEEcCCCCCHHHHHhhccCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccccccceEEEcCCC
Confidence            99999888 333322211122   44566777889999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCC----ccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPH----ASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~----~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .+||+|||+++........    ...++..|++||... ..+ ..+|+|+   ++|+++..+..||..
T Consensus       147 ~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~  214 (279)
T cd05109         147 HVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDG  214 (279)
T ss_pred             cEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999877544321    122356789999742 333 3556666   667777667777643

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.93  E-value=4.2e-25  Score=201.27  Aligned_cols=185  Identities=15%  Similarity=0.140  Sum_probs=137.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEee-----cCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTS-----EPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~-----~~~~~~   85 (334)
                      +++...||+|.++.+++.||+|+++....   ....+.+|+.+++.+ +|||+        +++++++.     .++.+|
T Consensus        28 ~g~~~~vy~~~~~~~~~~~~ik~~~~~~~---~~~~~~~e~~~l~~l~~h~~i--------~~~~~~~~~~~~~~~~~~~   96 (286)
T cd06638          28 KGTYGKVFKVLNKKNGSKAAVKILDPIHD---IDEEIEAEYNILKALSDHPNV--------VKFYGMYYKKDVKNGDQLW   96 (286)
T ss_pred             cCCCcEEEEEEECCCCceeEEEeeccccc---hHHHHHHHHHHHHHHhcCCCe--------eeeeeeeeecccCCCCeEE
Confidence            55677999999999999999999875432   224566799999999 69999        99999874     446799


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +..+...............+..++.|++.||.|||+.+                ++||||||+||+++++
T Consensus        97 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dlkp~nili~~~  160 (286)
T cd06638          97 LVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNK----------------TIHRDVKGNNILLTTE  160 (286)
T ss_pred             EEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCC----------------ccccCCCHHhEEECCC
Confidence            999999988 54433322211122345556677889999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCC--CCccccCcccccccccc------cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKK--PHASVESDCILHGYIKK------LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~------~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +.++|+|||+++......  .....|+..|++||+..      .. ...+|+|+   ++|++ .++..|+..
T Consensus       161 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el-~~g~~p~~~  231 (286)
T cd06638         161 GGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIEL-GDGDPPLAD  231 (286)
T ss_pred             CCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHH-hcCCCCCCC
Confidence            999999999998664432  23346788999999742      12 33556666   44554 555656543

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.93  E-value=3e-25  Score=207.99  Aligned_cols=188  Identities=19%  Similarity=0.064  Sum_probs=136.8

Q ss_pred             CCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeec-CCeE
Q psy6542          12 RVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSE-PNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~-~~~~   84 (334)
                      .++...||+|...     .+++.||+|.++...... ..+.+..|+++++++ +|+||        +++++++.. +..+
T Consensus        17 ~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~-~~~~~~~E~~~~~~l~~h~ni--------v~~~~~~~~~~~~~   87 (337)
T cd05054          17 RGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATAS-EYKALMTELKILIHIGHHLNV--------VNLLGACTKPGGPL   87 (337)
T ss_pred             cCcCceEEeccccccccccccceeeeeeccCCCCHH-HHHHHHHHHHHHHhhccCcch--------hheeeeEecCCCCE
Confidence            4678899999744     456899999998554332 334567799999999 89999        999998764 4678


Q ss_pred             EEEEEccCCC-hhHHhhhhhhh---------------------------------------------------------h
Q psy6542          85 YIIGVRQSGP-KDQISRSKINR---------------------------------------------------------Y  106 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~---------------------------------------------------------~  106 (334)
                      +++|||++|+ ++.++......                                                         .
T Consensus        88 ~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (337)
T cd05054          88 MVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYK  167 (337)
T ss_pred             EEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhh
Confidence            9999999998 44332221100                                                         0


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCC---
Q psy6542         107 HKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP---  183 (334)
Q Consensus       107 ~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~---  183 (334)
                      .......+..++.|++.||.|||+++                |+||||||+||+++.++.++|+|||+++.+.....   
T Consensus       168 ~~l~~~~~~~~~~qi~~aL~~lH~~~----------------ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~  231 (337)
T cd05054         168 EPLTLEDLISYSFQVARGMEFLASRK----------------CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVR  231 (337)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCcceEEEeCCCcEEEeccccchhcccCcchhh
Confidence            12245556778889999999999999                99999999999999999999999999987643321   


Q ss_pred             -CccccCccccccccc-cccC-Ccceeeh---hHHHHHcCCCCCCCC
Q psy6542         184 -HASVESDCILHGYIK-KLGG-PFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       184 -~~~~~t~~~~~~~v~-~~~~-~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                       ....++..|++||+. ...+ +.+|+|+   ++|+++..+..||.+
T Consensus       232 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~  278 (337)
T cd05054         232 KGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPG  278 (337)
T ss_pred             ccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCC
Confidence             122345679999974 3334 4555565   666766657777654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.93  E-value=2.7e-25  Score=204.98  Aligned_cols=186  Identities=12%  Similarity=0.065  Sum_probs=141.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++...||++.++.+++.||||.+..... .......+.+|+++++.++||||        +++++.+..++.+|+||||
T Consensus        11 ~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~~~~~lv~e~   82 (305)
T cd05609          11 NGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFV--------VSMFCSFETKRHLCMVMEY   82 (305)
T ss_pred             cCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCe--------eeeEEEEecCCEEEEEEec
Confidence            46667899999999999999999986543 22334567789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ...   .......++.|++.||.|||+.+                ++||||||+||+++.++.++|
T Consensus        83 ~~g~~L~~~l~~~-~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dl~p~NIll~~~~~~~l  142 (305)
T cd05609          83 VEGGDCATLLKNI-GAL---PVDMARMYFAETVLALEYLHNYG----------------IVHRDLKPDNLLITSMGHIKL  142 (305)
T ss_pred             CCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCchHHEEECCCCCEEE
Confidence            9988 54443332 122   44555667779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-----------------CCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK-----------------PHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~-----------------~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||+++......                 .....++..|++||...  ..+..+|+|+   ++|+++ ++..||.+..
T Consensus       143 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~-~g~~pf~~~~  220 (305)
T cd05609         143 TDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFL-VGCVPFFGDT  220 (305)
T ss_pred             eeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHH-hCCCCCCCCC
Confidence            9999987421110                 11234577788998742  3355677777   566655 4555765543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.93  E-value=3.2e-25  Score=203.83  Aligned_cols=184  Identities=14%  Similarity=0.161  Sum_probs=143.5

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++...||++.+..+|+.||||.+......  ..+.+.+|+.+++.++|||+        +++++++..++.+|+||||
T Consensus        28 g~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~--~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~   97 (296)
T cd06655          28 GQGASGTVFTAIDVATGQEVAIKQINLQKQP--KKELIINEILVMKELKNPNI--------VNFLDSFLVGDELFVVMEY   97 (296)
T ss_pred             ecCCCeEEEEEEEcCCCcEEEEEEEecccCc--hHHHHHHHHHHHHhcCCCce--------eeeeeeEecCceEEEEEEe
Confidence            3566779999999999999999999754432  23467789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +..+....  .+   ....+..++.|++.||.|||+.+                ++||||||+||+++.++.++|
T Consensus        98 ~~~~~L~~~~~~~--~l---~~~~~~~i~~~l~~al~~LH~~~----------------i~H~dL~p~Nili~~~~~~kl  156 (296)
T cd06655          98 LAGGSLTDVVTET--CM---DEAQIAAVCRECLQALEFLHANQ----------------VIHRDIKSDNVLLGMDGSVKL  156 (296)
T ss_pred             cCCCcHHHHHHhc--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEECCCCCEEE
Confidence            9988 54433321  22   44556677789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC--CccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP--HASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++........  ....++..|++||... . ....+|+|+   ++|++++ +..||.+.+
T Consensus       157 ~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~llt-g~~pf~~~~  219 (296)
T cd06655         157 TDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVE-GEPPYLNEN  219 (296)
T ss_pred             ccCccchhcccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCC
Confidence            99999986654432  2345788899999743 2 245567777   5556554 566775543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.6e-25  Score=199.86  Aligned_cols=184  Identities=16%  Similarity=0.157  Sum_probs=136.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHH-HHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEI-FNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~i-l~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .++...||+|.+..+|+.||||.+++... .......+..|..+ ....+|+|+        +++++++..++.+|+|||
T Consensus         6 ~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i--------~~~~~~~~~~~~~~lv~e   77 (260)
T cd05611           6 KGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYV--------AKLYYSFQSKDYLYLVME   77 (260)
T ss_pred             cCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCe--------eeeeeeEEcCCeEEEEEe
Confidence            45677999999999999999999976543 11122233445444 445689999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +..+.... ..   ........++.|++.||.|||+.+                ++||||+|+||++++++.++
T Consensus        78 ~~~~~~L~~~l~~~-~~---~~~~~~~~i~~qi~~aL~~lH~~~----------------i~H~dl~p~nil~~~~~~~~  137 (260)
T cd05611          78 YLNGGDCASLIKTL-GG---LPEDWAKQYIAEVVLGVEDLHQRG----------------IIHRDIKPENLLIDQTGHLK  137 (260)
T ss_pred             ccCCCCHHHHHHHc-CC---CCHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHeEECCCCcEE
Confidence            99988 54443321 12   245556677889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCCCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKPHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||++.....  .....++..|++||.... . +..+|+|+   ++|++ ..+..||....
T Consensus       138 l~dfg~~~~~~~--~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l-~~g~~p~~~~~  197 (260)
T cd05611         138 LTDFGLSRNGLE--NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEF-LFGYPPFHAET  197 (260)
T ss_pred             Eeecccceeccc--cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHH-HHCCCCCCCCC
Confidence            999999986544  223457788899997432 2 34555565   55555 45667775443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.93  E-value=2.3e-25  Score=203.80  Aligned_cols=244  Identities=11%  Similarity=0.013  Sum_probs=165.6

Q ss_pred             CCCCceEEEeceeCC-----CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEE
Q psy6542          11 SRVSKWRVKPPSLKP-----LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~-----~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      ..++...||+|.+..     ....||+|.+....... ....+.+|+++++.++||||        +++++.+..++..|
T Consensus         9 g~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~   79 (290)
T cd05045           9 GEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSS-ELRDLLSEFNLLKQVNHPHV--------IKLYGACSQDGPLL   79 (290)
T ss_pred             cCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHH-HHHHHHHHHHHHhhCCCCCE--------eeEEEEEecCCCcE
Confidence            456777899988653     33578999887654422 33568889999999999999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhh--------------------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcC
Q psy6542          86 IIGVRQSGP-KDQISRSKIN--------------------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTL  144 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~--------------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~  144 (334)
                      ++|||+.|+ +..+......                    .........++.++.|++.||.|||+.+            
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------------  147 (290)
T cd05045          80 LIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMK------------  147 (290)
T ss_pred             EEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCC------------
Confidence            999999988 4333221100                    0112345567788889999999999999            


Q ss_pred             CCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCccccccccc-cc-cCCcceeeh---hHHHHH
Q psy6542         145 SVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIK-KL-GGPFVSAWQ---TRYAKL  215 (334)
Q Consensus       145 ~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~-~~-~~~~~~~w~---~~~~~l  215 (334)
                          ++||||||+||++++++.+||+|||+++.......    ....++..|++||.. .. ....+|+|+   ++|+++
T Consensus       148 ----ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~  223 (290)
T cd05045         148 ----LVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIV  223 (290)
T ss_pred             ----eehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHH
Confidence                99999999999999999999999999986543321    222345678888863 22 344567777   667776


Q ss_pred             cCCCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhccc
Q psy6542         216 FPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRS  295 (334)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  295 (334)
                      ..+.+||.+....                .         +.......  .+..    .....+..+.+  +..+|...+|
T Consensus       224 t~g~~p~~~~~~~----------------~---------~~~~~~~~--~~~~----~~~~~~~~~~~--~i~~cl~~~P  270 (290)
T cd05045         224 TLGGNPYPGIAPE----------------R---------LFNLLKTG--YRME----RPENCSEEMYN--LMLTCWKQEP  270 (290)
T ss_pred             hcCCCCCCCCCHH----------------H---------HHHHHhCC--CCCC----CCCCCCHHHHH--HHHHHccCCc
Confidence            6577776443210                0         00000000  0000    01122333444  7888888899


Q ss_pred             ccch-hHHHHHHHHHHhC
Q psy6542         296 AHKC-SQELLGSMARKAG  312 (334)
Q Consensus       296 ~~r~-~~~lL~~l~~~~~  312 (334)
                      ..|+ ..++++.+.+..+
T Consensus       271 ~~Rp~~~~i~~~l~~~~~  288 (290)
T cd05045         271 DKRPTFADISKELEKMMV  288 (290)
T ss_pred             ccCCCHHHHHHHHHHHHh
Confidence            9999 7788777776543

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.93  E-value=6.1e-25  Score=202.02  Aligned_cols=183  Identities=14%  Similarity=0.159  Sum_probs=141.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++.+..+|+.||||.+......  ....+.+|+.+++.++|+|+        +++++++..++.+|+||||+
T Consensus        29 ~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~~~h~~i--------~~~~~~~~~~~~~~lv~e~~   98 (297)
T cd06656          29 QGASGTVYTAIDIATGQEVAIKQMNLQQQP--KKELIINEILVMRENKNPNI--------VNYLDSYLVGDELWVVMEYL   98 (297)
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEecCccc--hHHHHHHHHHHHHhCCCCCE--------eeEEEEEecCCEEEEeeccc
Confidence            456679999999999999999999865443  23457789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+....  ..   ....+..++.|++.||.|||+.+                ++||||||+||+++.++.++|+
T Consensus        99 ~~~~L~~~~~~~--~~---~~~~~~~~~~~l~~~L~~LH~~~----------------i~H~dL~p~Nili~~~~~~~l~  157 (297)
T cd06656          99 AGGSLTDVVTET--CM---DEGQIAAVCRECLQALDFLHSNQ----------------VIHRDIKSDNILLGMDGSVKLT  157 (297)
T ss_pred             CCCCHHHHHHhC--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEECCCCCEEEC
Confidence            988 43332221  12   34455677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC--CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP--HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~~--~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||++........  ....+++.|++||... .. ...+|+|+   ++|++ +.+..||.+.+
T Consensus       158 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l-~tg~~pf~~~~  219 (297)
T cd06656         158 DFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEM-VEGEPPYLNEN  219 (297)
T ss_pred             cCccceEccCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHH-HhCCCCCCCCC
Confidence            9999986544432  2345788899999743 22 34566676   44554 55677776544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.93  E-value=5.3e-25  Score=196.81  Aligned_cols=187  Identities=17%  Similarity=0.093  Sum_probs=143.8

Q ss_pred             CCCCceEEEeceeCCCC----CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          11 SRVSKWRVKPPSLKPLG----FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~----~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      .+++.+.||++.+..++    ..||+|.++...... ..+.+..|+++++.++|+|+        +++++++.+.+..|+
T Consensus         8 g~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~   78 (258)
T smart00219        8 GEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQ-QIEEFLREARIMRKLDHPNI--------VKLLGVCTEEEPLMI   78 (258)
T ss_pred             ccCCCcceEEEEecCCCCCCCceEEEEEccCCCChH-HHHHHHHHHHHHHhcCCCch--------heEEEEEcCCCeeEE
Confidence            35778899999998877    999999997654432 44578889999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +|||++|+ +..+.......  .......+.++.|++.||.|||+.+                ++||||||+||++++++
T Consensus        79 i~e~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~ql~~~l~~lh~~~----------------~~h~dl~~~nil~~~~~  140 (258)
T smart00219       79 VMEYMEGGDLLDYLRKNRPK--ELSLSDLLSFALQIARGMEYLESKN----------------FIHRDLAARNCLVGENL  140 (258)
T ss_pred             EEeccCCCCHHHHHHhhhhc--cCCHHHHHHHHHHHHHHHHHHhcCC----------------eeecccccceEEEccCC
Confidence            99999887 43332222111  0355666778889999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCCc---cccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHA---SVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~---~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .++|+|||+++.........   ..++..|++||...  .....+|+|+   ++|+++..+.+||..
T Consensus       141 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~  207 (258)
T smart00219      141 VVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPG  207 (258)
T ss_pred             eEEEcccCCceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999998665542211   22567889998752  2344566677   566776667777654

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=4.5e-25  Score=199.94  Aligned_cols=183  Identities=17%  Similarity=0.107  Sum_probs=143.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||+|.+..+|+.||||.+....... ....+.+|+++++.++|+|+        +++++++.++..+|+|+||+
T Consensus        11 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~v~e~~   81 (274)
T cd06609          11 KGSFGEVYKAIDKRTNQVVAIKVIDLEEAED-EIEDIQQEIQFLSQCRSPYI--------TKYYGSFLKGSKLWIIMEYC   81 (274)
T ss_pred             CCCCeEEEEEEECCCCeEEEEEEeeccccch-HHHHHHHHHHHHHHcCCCCe--------eeeeEEEEECCeEEEEEEee
Confidence            5678899999999999999999998654322 33457789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +.......     .......+.++.|++.||.|||+++                ++|+||+|+||++++++.++|+
T Consensus        82 ~~~~L~~~~~~~-----~~~~~~~~~~~~ql~~~l~~lh~~~----------------i~h~dl~p~ni~i~~~~~~~l~  140 (274)
T cd06609          82 GGGSCLDLLKPG-----KLDETYIAFILREVLLGLEYLHEEG----------------KIHRDIKAANILLSEEGDVKLA  140 (274)
T ss_pred             CCCcHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCHHHEEECCCCCEEEc
Confidence            988 43322221     2245556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||+++......  .....++..|++||....  ....+|+|+   ++|+++ ++.+||...
T Consensus       141 d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~-tg~~p~~~~  201 (274)
T cd06609         141 DFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELA-KGEPPLSDL  201 (274)
T ss_pred             ccccceeecccccccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHH-hCCCCcccC
Confidence            999998776542  234567788999997432  244566666   555554 567777543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.93  E-value=9.5e-26  Score=208.49  Aligned_cols=188  Identities=13%  Similarity=0.083  Sum_probs=142.7

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      ..++...||++.+..+|+.||||+++.........+.+.+|+++++.++|+||        +++++++..++..|++|||
T Consensus         9 ~~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i--------~~~~~~~~~~~~~~~~~e~   80 (314)
T cd08216           9 CFEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNI--------LPYVTSFIVDSELYVVSPL   80 (314)
T ss_pred             hhcCCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcch--------hhhhheeecCCeEEEEEec
Confidence            33455678888888999999999998764444455678899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++++ ++.+... ....+   .......++.|++.||.|||+++                |+||||||+||+++.++.+|
T Consensus        81 ~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~l~~~L~~LH~~~----------------ivH~dlk~~Nili~~~~~~k  141 (314)
T cd08216          81 MAYGSCEDLLKTHFPEGL---PELAIAFILKDVLNALDYIHSKG----------------FIHRSVKASHILLSGDGKVV  141 (314)
T ss_pred             cCCCCHHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCcceEEEecCCceE
Confidence            9988 4333332 22222   34445567789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC---------CCccccCccccccccccc---c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK---------PHASVESDCILHGYIKKL---G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~---------~~~~~~t~~~~~~~v~~~---~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||.+.......         .....++..|++||+...   + .+.+|+|+   ++|++ ..+.+||....
T Consensus       142 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el-~~g~~pf~~~~  214 (314)
T cd08216         142 LSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACEL-ANGHVPFKDMP  214 (314)
T ss_pred             EecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHH-HhCCCCCCCCC
Confidence            99999987553221         122345677899998432   2 34567776   55565 55777876543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>PTZ00284 protein kinase; Provisional

Probab=99.93  E-value=8.9e-26  Score=220.54  Aligned_cols=188  Identities=18%  Similarity=0.197  Sum_probs=134.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC-CeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP-NSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~-~~~~ivmEy   90 (334)
                      +++...||+|.+..+++.||||+++....   .......|+++++.++|.++..  ...++++++++..+ +.+|+|||+
T Consensus       139 ~G~fg~V~~a~~~~~~~~vAvK~i~~~~~---~~~~~~~e~~~l~~l~~~~~~~--~~~i~~i~~~~~~~~~~~~iv~~~  213 (467)
T PTZ00284        139 EGTFGKVVEAWDRKRKEYCAVKIVRNVPK---YTRDAKIEIQFMEKVRQADPAD--RFPLMKIQRYFQNETGHMCIVMPK  213 (467)
T ss_pred             eccCEEEEEEEEcCCCeEEEEEEEecchh---hHHHHHHHHHHHHHHhhcCccc--CcceeeeEEEEEcCCceEEEEEec
Confidence            56778999999999999999999975322   2234456888888887765311  11128888888754 579999999


Q ss_pred             cCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC---
Q psy6542          91 QSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG---  165 (334)
Q Consensus        91 ~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~---  165 (334)
                      +.+++ +++...  ..+   ....+..++.||+.||.|||+ .+                |+||||||+|||++.++   
T Consensus       214 ~g~~l~~~l~~~--~~l---~~~~~~~i~~qi~~aL~yLH~~~g----------------IiHrDlKP~NILl~~~~~~~  272 (467)
T PTZ00284        214 YGPCLLDWIMKH--GPF---SHRHLAQIIFQTGVALDYFHTELH----------------LMHTDLKPENILMETSDTVV  272 (467)
T ss_pred             cCCCHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHhcCC----------------eecCCCCHHHEEEecCCccc
Confidence            97774 444332  123   344556677899999999997 58                99999999999998765   


Q ss_pred             -------------CEEEEecccccccCCCCCCccccCcccccccccc-ccCCc-ceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         166 -------------HVRISDLGLACDFSKKKPHASVESDCILHGYIKK-LGGPF-VSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       166 -------------~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~~~~-~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                                   .+||+|||++...... ....+||..|++||+.. ..+.. +|+|+   ++|++ ..+.+||.+.+.
T Consensus       273 ~~~~~~~~~~~~~~vkl~DfG~~~~~~~~-~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~el-ltG~~pf~~~~~  350 (467)
T PTZ00284        273 DPVTNRALPPDPCRVRICDLGGCCDERHS-RTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYEL-YTGKLLYDTHDN  350 (467)
T ss_pred             ccccccccCCCCceEEECCCCccccCccc-cccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHH-HhCCCCCCCCCh
Confidence                         4999999998654332 33467899999999843 33444 55555   45555 557788876653

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.93  E-value=2.7e-25  Score=199.21  Aligned_cols=185  Identities=16%  Similarity=0.130  Sum_probs=141.1

Q ss_pred             CCCCceEEEeceeCC-CCC--cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          11 SRVSKWRVKPPSLKP-LGF--PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~-~~~--~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .+++...||+|.+.. .++  .||||.++..... ...+.+.+|++++++++||||        +++++++.+ +.+++|
T Consensus         4 g~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~-~~~~~v   73 (257)
T cd05040           4 GDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS-DIMDDFLKEAAIMHSLDHENL--------IRLYGVVLT-HPLMMV   73 (257)
T ss_pred             CccCcccEEeeeEecCCCCceEEEEeecCCcccH-HHHHHHHHHHHHHhhcCCCCc--------cceeEEEcC-CeEEEE
Confidence            357788999998765 333  6899999876654 456678899999999999999        999999988 889999


Q ss_pred             EEccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          88 GVRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        88 mEy~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      |||++++ + +.+.....   .......++.++.|++.||.|||+++                ++||||||+||+++.++
T Consensus        74 ~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~L~~lH~~~----------------i~H~di~p~nil~~~~~  134 (257)
T cd05040          74 TELAPLGSLLDRLRKDAL---GHFLISTLCDYAVQIANGMRYLESKR----------------FIHRDLAARNILLASDD  134 (257)
T ss_pred             EEecCCCcHHHHHHhccc---ccCcHHHHHHHHHHHHHHHHHHHhCC----------------ccccccCcccEEEecCC
Confidence            9999887 4 33322221   22356667778889999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCC-----CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKP-----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .+||+|||+++.+.....     ....++..|++||...  .....+|+|+   ++|+++..+..||..
T Consensus       135 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~  203 (257)
T cd05040         135 KVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAG  203 (257)
T ss_pred             EEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            999999999987654321     1234567789999743  3344567777   667776646667543

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.93  E-value=2.6e-25  Score=204.30  Aligned_cols=190  Identities=13%  Similarity=0.048  Sum_probs=139.3

Q ss_pred             CCCCceEEEeceeCCCCCc--EEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFP--IQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~--vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      ..++..+||+|..+.++..  +|+|.++.... ....+.+.+|++++.++ +||||        +++++++...+.+|++
T Consensus        11 g~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~E~~~l~~l~~hp~i--------v~~~~~~~~~~~~~lv   81 (297)
T cd05089          11 GEGNFGQVIRAMIKKDGLKMNAAIKMLKEFAS-ENDHRDFAGELEVLCKLGHHPNI--------INLLGACENRGYLYIA   81 (297)
T ss_pred             cCCCcceEEEEEecCCCCcceeEEEEccccCC-HHHHHHHHHHHHHHHhhcCCCch--------hheEEEEccCCcceEE
Confidence            3577889999999887764  68888874332 22345678899999999 79999        9999999999999999


Q ss_pred             EEccCCC-h-hHHhhhhhhh-----------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCC
Q psy6542          88 GVRQSGP-K-DQISRSKINR-----------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDL  154 (334)
Q Consensus        88 mEy~~g~-l-~~l~~~~~~~-----------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDl  154 (334)
                      |||++++ + +++.......           .........+.++.|++.||.|||+++                ++||||
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~----------------ivH~dl  145 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQ----------------FIHRDL  145 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCC----------------cccCcC
Confidence            9999887 4 3443321100           012345566778889999999999999                999999


Q ss_pred             CCCceeeCCCCCEEEEecccccccCCCCCCc-cccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         155 KPANILLDEHGHVRISDLGLACDFSKKKPHA-SVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       155 Kp~NiLl~~~~~vkl~DFGla~~~~~~~~~~-~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ||+|||++.++.+||+|||++.......... ...+..|++||+.. . .+..+|+|+   ++|+++..+.+||.+.
T Consensus       146 kp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~  222 (297)
T cd05089         146 AARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGM  222 (297)
T ss_pred             CcceEEECCCCeEEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999987543222211 12245688998743 2 245667777   6777776577777543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.93  E-value=4.1e-25  Score=203.73  Aligned_cols=187  Identities=16%  Similarity=0.037  Sum_probs=139.4

Q ss_pred             CCCceEEEecee-----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSL-----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~-----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++...||++.+     ..++..||||.++..... ...+.+.+|+++++++ +|+||        +++++++..++.+|
T Consensus        45 ~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~~h~~i--------v~~~~~~~~~~~~~  115 (302)
T cd05055          45 AGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHS-SEREALMSELKIMSHLGNHENI--------VNLLGACTIGGPIL  115 (302)
T ss_pred             ccCCeeEEEEEEecCCCCCceeEEEEEecCccCCh-HHHHHHHHHHHHHHhccCCCCc--------ceEEEEEecCCceE
Confidence            366678998864     445668999998865432 2345778899999999 79999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||+.++ +..+.......  .......+.++.|++.||.|||+++                ++|+||||+|||++.+
T Consensus       116 lv~e~~~~~~L~~~i~~~~~~--~l~~~~~~~i~~~i~~~l~~lH~~~----------------ivH~dlkp~Nil~~~~  177 (302)
T cd05055         116 VITEYCCYGDLLNFLRRKRES--FLTLEDLLSFSYQVAKGMAFLASKN----------------CIHRDLAARNVLLTHG  177 (302)
T ss_pred             EEEEcCCCCcHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHCC----------------eehhhhccceEEEcCC
Confidence            999999987 43333321111  1245556677889999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCCC----ccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKKPH----ASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~~----~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +.++|+|||+++........    ...++..|++||+...  ....+|+|+   ++|+++..+..||.+.
T Consensus       178 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~  247 (302)
T cd05055         178 KIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGM  247 (302)
T ss_pred             CeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCC
Confidence            99999999999866443221    2234677899997432  244566676   6677766577776543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.93  E-value=3.8e-25  Score=200.90  Aligned_cols=181  Identities=15%  Similarity=0.109  Sum_probs=141.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .+....||+|.+..+++.||||.+....... ..+.+.+|+++++.++||||        +++++++..++.+|+||||+
T Consensus        14 ~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06642          14 KGSFGEVYKGIDNRTKEVVAIKIIDLEEAED-EIEDIQQEITVLSQCDSPYI--------TRYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             CCCCeeEEEEEEcCCCeEEEEEEeccccchH-HHHHHHHHHHHHHcCCCCcc--------HhhhcccccCCceEEEEEcc
Confidence            4667899999999999999999988554333 34578889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+...  ..+   ....+..++.|++.||.|||+++                ++|+||+|+||++++++.++|+
T Consensus        85 ~~~~L~~~~~~--~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------ivH~dl~p~ni~i~~~~~~~l~  143 (277)
T cd06642          85 GGGSALDLLKP--GPL---EETYIATILREILKGLDYLHSER----------------KIHRDIKAANVLLSEQGDVKLA  143 (277)
T ss_pred             CCCcHHHHhhc--CCC---CHHHHHHHHHHHHHHHHHHhcCC----------------eeccCCChheEEEeCCCCEEEc
Confidence            988 4333221  122   44555677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC--CccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         171 DLGLACDFSKKKP--HASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       171 DFGla~~~~~~~~--~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      |||++........  ....++..|++||....  ....+|+|+   ++|+++ ++..|+.
T Consensus       144 dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~-tg~~p~~  202 (277)
T cd06642         144 DFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELA-KGEPPNS  202 (277)
T ss_pred             cccccccccCcchhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHH-hCCCCCc
Confidence            9999986654332  23456788999997432  244677777   666665 4566654

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.93  E-value=5e-25  Score=201.75  Aligned_cols=186  Identities=12%  Similarity=0.050  Sum_probs=139.2

Q ss_pred             CCCceEEEeceeCCCC----------------CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEE
Q psy6542          12 RVSKWRVKPPSLKPLG----------------FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLY   75 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~----------------~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~   75 (334)
                      +++.+.||+|.+..++                ..||+|.+...... ...+.+.+|+++++.++|||+        ++++
T Consensus        15 ~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i--------~~~~   85 (296)
T cd05051          15 EGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASD-NAREDFLKEVKILSRLSDPNI--------ARLL   85 (296)
T ss_pred             CCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCH-HHHHHHHHHHHHHHhcCCCCE--------eEEE
Confidence            5677789998877654                56899998865443 345578889999999999999        9999


Q ss_pred             EEeecCCeEEEEEEccCCC-hhHHhhhhh-h------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCC
Q psy6542          76 KVTSEPNSHYIIGVRQSGP-KDQISRSKI-N------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVP  147 (334)
Q Consensus        76 ~~~~~~~~~~ivmEy~~g~-l~~l~~~~~-~------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~  147 (334)
                      +++..++..+++|||+.++ +..+..... .      .........++.++.|++.||.|||+.+               
T Consensus        86 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~---------------  150 (296)
T cd05051          86 GVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLN---------------  150 (296)
T ss_pred             EEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcC---------------
Confidence            9999999999999999887 433322211 0      0113356667778889999999999999               


Q ss_pred             cEEeeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc--ccCCcceeeh---hHHHHHcC-
Q psy6542         148 CLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFP-  217 (334)
Q Consensus       148 ~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~-  217 (334)
                       ++||||||+||++++++.++|+|||+++.......    ....++..|++||...  .....+|+|+   ++|+++.. 
T Consensus       151 -i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~  229 (296)
T cd05051         151 -FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLC  229 (296)
T ss_pred             -ccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcC
Confidence             99999999999999999999999999986544321    1233466799999743  3355677777   66776653 


Q ss_pred             CCCCC
Q psy6542         218 NRLEL  222 (334)
Q Consensus       218 ~~~~~  222 (334)
                      +..||
T Consensus       230 ~~~p~  234 (296)
T cd05051         230 REQPY  234 (296)
T ss_pred             CCCCC
Confidence            44454

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=2.3e-25  Score=199.75  Aligned_cols=232  Identities=16%  Similarity=0.092  Sum_probs=162.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|...  |+.||||.++....   ..+++.+|+.+++.++|+|+        +++++++.+.+..|+||||+
T Consensus        16 ~g~~g~v~~~~~~--~~~v~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~v~e~~   82 (256)
T cd05039          16 KGEFGDVMLGDYR--GQKVAVKCLKDDST---AAQAFLAEASVMTTLRHPNL--------VQLLGVVLQGNPLYIVTEYM   82 (256)
T ss_pred             cCCCceEEEEEec--CcEEEEEEeccchh---HHHHHHHHHHHHHhcCCcce--------eeeEEEEcCCCCeEEEEEec
Confidence            4566799998764  78999999985543   35678889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +++ +..+......  ..........++.|++.||.|||+++                ++||||||+||+++.++.++|+
T Consensus        83 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lh~~~----------------i~H~di~p~Nili~~~~~~~l~  144 (256)
T cd05039          83 AKGSLVDYLRSRGR--AVITLAQQLGFALDVCEGMEYLEEKN----------------FVHRDLAARNVLVSEDLVAKVS  144 (256)
T ss_pred             CCCcHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHHhCC----------------ccchhcccceEEEeCCCCEEEc
Confidence            976 4433332211  12245556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccccccc
Q psy6542         171 DLGLACDFSKKKPHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQD  245 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  245 (334)
                      |||+++....... ....+..|++||...  .....+|+|+   ++|+++..+..||...+..                 
T Consensus       145 d~g~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-----------------  206 (256)
T cd05039         145 DFGLAKEASQGQD-SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK-----------------  206 (256)
T ss_pred             ccccccccccccc-cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHH-----------------
Confidence            9999987744333 223355688888643  2244567777   6677776577776332210                 


Q ss_pred             cccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHH
Q psy6542         246 LITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMA  308 (334)
Q Consensus       246 ~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~  308 (334)
                              .+......+.  +.  .  .....++.+.+  +..++...+|..|+ +.++++.+.
T Consensus       207 --------~~~~~~~~~~--~~--~--~~~~~~~~~~~--li~~~l~~~p~~Rp~~~~l~~~l~  254 (256)
T cd05039         207 --------DVVPHVEKGY--RM--E--APEGCPPEVYK--VMKDCWELDPAKRPTFKQLREQLA  254 (256)
T ss_pred             --------HHHHHHhcCC--CC--C--CccCCCHHHHH--HHHHHhccChhhCcCHHHHHHHHh
Confidence                    0011111110  00  0  11223444555  77788888888888 888877764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.93  E-value=3.3e-25  Score=199.16  Aligned_cols=182  Identities=16%  Similarity=0.127  Sum_probs=137.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||++.... +..||||.++.....   ...+.+|+.++++++||||        +++++++.+++.+|+||||+
T Consensus        14 ~G~~~~vy~~~~~~-~~~~aik~~~~~~~~---~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05113          14 TGQFGVVKYGKWRG-QYDVAIKMIKEGSMS---EDEFIEEAKVMMKLSHEKL--------VQLYGVCTKQRPIYIVTEYM   81 (256)
T ss_pred             CcccceEEEEEecC-CCcEEEEEcCCCccc---HHHHHHHHHHHhcCCCCCe--------eeEEEEEccCCCcEEEEEcC
Confidence            45667899997765 557999998854432   2357789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .++ +..+.......   .....++.++.|++.||.|||+.+                ++|+||||+||+++.++.+||+
T Consensus        82 ~~~~l~~~i~~~~~~---~~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dl~p~nili~~~~~~kl~  142 (256)
T cd05113          82 SNGCLLNYLREHGKR---FQPSQLLEMCKDVCEGMAYLESKQ----------------FIHRDLAARNCLVDDQGCVKVS  142 (256)
T ss_pred             CCCcHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHHhCC----------------eeccccCcceEEEcCCCCEEEC
Confidence            887 43332322112   255566778889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCc---cccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPHA---SVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~~~~---~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||+++.........   ..++..|++||+..  .....+|+|+   ++|+++..+..||..
T Consensus       143 d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~  204 (256)
T cd05113         143 DFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYER  204 (256)
T ss_pred             CCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCc
Confidence            999998664443222   22345689999853  2345677777   667776656667643

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.93  E-value=3.1e-25  Score=198.76  Aligned_cols=181  Identities=13%  Similarity=0.088  Sum_probs=137.1

Q ss_pred             CCCceEEEeceeCCCC----------CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC
Q psy6542          12 RVSKWRVKPPSLKPLG----------FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP   81 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~----------~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~   81 (334)
                      +++...||++.+..++          ..||+|.+......   ...+.+|+.+++.++||||        +++++++.. 
T Consensus         5 ~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~---~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~-   72 (259)
T cd05037           5 QGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD---SLAFFETASLMSQLSHKHL--------VKLYGVCVR-   72 (259)
T ss_pred             ccccceEEEEEEeccCCccccCCccceeeeeeccccchhh---HHHHHHHHHHHHcCCCcch--------hheeeEEec-
Confidence            5677899999998877          45788877644322   4677889999999999999        999999887 


Q ss_pred             CeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCcee
Q psy6542          82 NSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANIL  160 (334)
Q Consensus        82 ~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiL  160 (334)
                      +..++||||+.++ ++.+.......+   .....+.++.|++.||.|||+++                |+||||||+||+
T Consensus        73 ~~~~lv~e~~~~~~L~~~l~~~~~~~---~~~~~~~~~~~i~~~l~~LH~~~----------------i~H~dlkp~Nil  133 (259)
T cd05037          73 DENIMVEEYVKFGPLDVFLHREKNNV---SLHWKLDVAKQLASALHYLEDKK----------------LVHGNVCGKNIL  133 (259)
T ss_pred             CCcEEEEEcCCCCcHHHHHHhhccCC---CHHHHHHHHHHHHHHHHHHhhCC----------------eecccCccceEE
Confidence            7789999999998 544433322122   44456677889999999999999                999999999999


Q ss_pred             eCCCC-------CEEEEecccccccCCCCCCccccCccccccccccc----cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         161 LDEHG-------HVRISDLGLACDFSKKKPHASVESDCILHGYIKKL----GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       161 l~~~~-------~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~----~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ++.++       .+||+|||++......  ....++..|++||+...    ....+|+|+   ++|++++++..|+...
T Consensus       134 l~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~  210 (259)
T cd05037         134 VARYGLNEGYVPFIKLSDPGIPITVLSR--EERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTL  210 (259)
T ss_pred             EecCccccCCceeEEeCCCCcccccccc--cccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccC
Confidence            99888       7999999999866542  22345567889997432    244566676   6777777666665443

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.93  E-value=1.9e-25  Score=201.02  Aligned_cols=186  Identities=17%  Similarity=0.213  Sum_probs=144.6

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++...||++.++.+++.||+|.+.....+ ...+.+.+|+++++.++||||        +++++++..++.+|++|||
T Consensus        10 g~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605          10 GAGNSGVVSKVLHRPTGKIMAVKTIRLEINE-AIQKQILRELDILHKCNSPYI--------VGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             cCCCCeEEEEEEEcCCCcEEEEEEEecccCh-HHHHHHHHHHHHHHHCCCCch--------hhhheeeecCCEEEEEEEe
Confidence            3467778999999999999999999876543 345567789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      +.|+ +..+.......+   .......++.|++.||.|||+ .+                ++|+||||+||++++++.++
T Consensus        81 ~~~~~L~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~lH~~~~----------------i~H~dl~~~ni~~~~~~~~~  141 (265)
T cd06605          81 MDGGSLDKILKEVQGRI---PERILGKIAVAVLKGLTYLHEKHK----------------IIHRDVKPSNILVNSRGQIK  141 (265)
T ss_pred             cCCCcHHHHHHHccCCC---CHHHHHHHHHHHHHHHHHHcCCCC----------------eecCCCCHHHEEECCCCCEE
Confidence            9977 544433221222   445556778899999999999 88                99999999999999999999


Q ss_pred             EEecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |+|||++............++..|++||... .. ...+|+|+   ++|+++ .+..||...
T Consensus       142 l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~-~g~~p~~~~  202 (265)
T cd06605         142 LCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELA-TGRFPYPPE  202 (265)
T ss_pred             EeecccchhhHHHHhhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHH-hCCCCCCcc
Confidence            9999999866544443466788899999742 22 34566666   455554 556666544

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.93  E-value=4.1e-25  Score=203.56  Aligned_cols=188  Identities=15%  Similarity=0.084  Sum_probs=138.1

Q ss_pred             CCCceEEEeceeC-------CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPPSLK-------PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~-------~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      .++.+.||+|...       ..+..||+|.+...... ...+.+.+|+.+++.+ +||||        +++++++...+.
T Consensus        25 ~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~-~~~~~~~~E~~~l~~l~~h~~i--------~~~~~~~~~~~~   95 (304)
T cd05101          25 EGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNI--------INLLGACTQDGP   95 (304)
T ss_pred             ccCCceEEEEEEeccCCCCCCcceeEEeeecccccch-HHHHHHHHHHHHHHhhccCCCc--------hheeEEEecCCc
Confidence            5778899999742       34567999998754332 2345678899999999 89999        999999999999


Q ss_pred             EEEEEEccCCC-hhHHhhhhhh-h-----------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE
Q psy6542          84 HYIIGVRQSGP-KDQISRSKIN-R-----------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH  150 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~~~~-~-----------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii  150 (334)
                      .|++|||+.++ +..+...... .           ........++.++.|++.||.|||+++                ++
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~g----------------iv  159 (304)
T cd05101          96 LYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQK----------------CI  159 (304)
T ss_pred             eEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCC----------------ee
Confidence            99999999887 4433222110 0           012244556777889999999999999                99


Q ss_pred             eeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCC
Q psy6542         151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       151 HrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~  221 (334)
                      ||||||+||+++.++.+||+|||+++.......    ....++..|++||+.. .. ...+|+|+   ++|+++..+..|
T Consensus       160 H~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p  239 (304)
T cd05101         160 HRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP  239 (304)
T ss_pred             ecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999987654321    2223456789999743 22 34566666   677777656666


Q ss_pred             CCC
Q psy6542         222 LHP  224 (334)
Q Consensus       222 ~~~  224 (334)
                      |.+
T Consensus       240 ~~~  242 (304)
T cd05101         240 YPG  242 (304)
T ss_pred             ccc
Confidence            533

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.93  E-value=4.1e-26  Score=207.77  Aligned_cols=187  Identities=21%  Similarity=0.213  Sum_probs=144.8

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++...||+|.++.+|+.||+|.+..........+.+.+|+++++.++||||        +++++++.+++..|+||||
T Consensus        10 g~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~   81 (286)
T cd07846          10 GEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENL--------VNLIEVFRRKKRLYLVFEF   81 (286)
T ss_pred             ccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcch--------hhHHHhcccCCeEEEEEec
Confidence            34667799999999999999999987655544455677889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++++ ++.+.... ..+   .......++.|++.||.|||+.+                ++|+||+|+||++++++.++|
T Consensus        82 ~~~~~l~~~~~~~-~~~---~~~~~~~~~~~i~~~l~~LH~~~----------------i~h~~l~p~ni~~~~~~~~~l  141 (286)
T cd07846          82 VDHTVLDDLEKYP-NGL---DESRVRKYLFQILRGIEFCHSHN----------------IIHRDIKPENILVSQSGVVKL  141 (286)
T ss_pred             CCccHHHHHHhcc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCCHHHEEECCCCcEEE
Confidence            9998 44432221 122   45556777889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC--CccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP--HASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++........  ....++..|++||+...   ....+|+|+   ++|+++. +.++|.+.+
T Consensus       142 ~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~-g~~~~~~~~  205 (286)
T cd07846         142 CDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLT-GEPLFPGDS  205 (286)
T ss_pred             EeeeeeeeccCCccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHc-CCCCCCCCc
Confidence            99999986544322  23456788999997432   234566676   5566655 466665443

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.93  E-value=2.5e-25  Score=202.17  Aligned_cols=240  Identities=14%  Similarity=0.068  Sum_probs=165.8

Q ss_pred             CCCCceEEEeceeCC-----CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEE
Q psy6542          11 SRVSKWRVKPPSLKP-----LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~-----~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      .+++...||+|.+..     ++..||+|.+...... .....+.+|+.+++.++|+||        +++++++.+.+..|
T Consensus        15 g~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~   85 (277)
T cd05036          15 GHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSE-QDESDFLMEALIMSKFNHQNI--------VRLIGVSFERLPRF   85 (277)
T ss_pred             CCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCH-HHHHHHHHHHHHHHhCCCCCE--------eeEEEEEccCCCcE
Confidence            456777999999987     7889999988754432 233467789999999999999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhh-h--hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          86 IIGVRQSGP-KDQISRSKI-N--RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~-~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      +||||+.|+ +..+..... .  ..........+.++.||+.||.|||+++                ++||||||+||++
T Consensus        86 lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~----------------ivH~dlkp~nil~  149 (277)
T cd05036          86 ILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENH----------------FIHRDIAARNCLL  149 (277)
T ss_pred             EEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC----------------EeecccchheEEE
Confidence            999999887 443322221 1  1112355666778889999999999999                9999999999999


Q ss_pred             CCCC---CEEEEecccccccCCCCCC----ccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCC
Q psy6542         162 DEHG---HVRISDLGLACDFSKKKPH----ASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQS  229 (334)
Q Consensus       162 ~~~~---~vkl~DFGla~~~~~~~~~----~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~  229 (334)
                      +.++   .+||+|||+++........    ....+..|++||+..  .....+|+|+   ++|+++..+..||.+.+...
T Consensus       150 ~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~  229 (277)
T cd05036         150 TCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQE  229 (277)
T ss_pred             eccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH
Confidence            8765   5899999999876433221    112245689999742  3345667777   67777776887875543110


Q ss_pred             cccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHH
Q psy6542         230 KPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMA  308 (334)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~  308 (334)
                                               +.........  .    ......+..+.+  +...|...+|..|+ +.++++++.
T Consensus       230 -------------------------~~~~~~~~~~--~----~~~~~~~~~~~~--~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         230 -------------------------VMEFVTGGGR--L----DPPKGCPGPVYR--IMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             -------------------------HHHHHHcCCc--C----CCCCCCCHHHHH--HHHHHcCCCcccCcCHHHHHHHhh
Confidence                                     0001100000  0    011223344444  77788888888888 888888764

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.93  E-value=4.4e-25  Score=204.47  Aligned_cols=242  Identities=12%  Similarity=0.036  Sum_probs=162.4

Q ss_pred             CCCceEEEeceeC-------CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPPSLK-------PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~-------~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      .++.+.||+|.+.       ..+..||+|.++...... ....+..|+++++.+ +||||        +++++++..++.
T Consensus        22 ~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~E~~~l~~l~~h~~i--------v~~~~~~~~~~~   92 (314)
T cd05099          22 EGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDK-DLADLISEMELMKLIGKHKNI--------INLLGVCTQEGP   92 (314)
T ss_pred             CCCcccEEEeeecccCCccCCcceEEEEEecCCCCChH-HHHHHHHHHHHHHhccCCCCe--------eeEEEEEccCCc
Confidence            4667799998763       335579999988544322 344577899999999 69999        999999999999


Q ss_pred             EEEEEEccCCC-hhHHhhhhhh------------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE
Q psy6542          84 HYIIGVRQSGP-KDQISRSKIN------------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH  150 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~~~~------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii  150 (334)
                      +|++|||+.++ +..+......            ............++.|++.||.|||+++                ++
T Consensus        93 ~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g----------------i~  156 (314)
T cd05099          93 LYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRR----------------CI  156 (314)
T ss_pred             eEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCC----------------ee
Confidence            99999999988 4433322110            0112345556677889999999999999                99


Q ss_pred             eeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCC
Q psy6542         151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       151 HrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~  221 (334)
                      ||||||+||+++.++.+||+|||+++.......    ....++..|++||+.. ..+ ..+|+|+   ++|+++..+..|
T Consensus       157 H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p  236 (314)
T cd05099         157 HRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSP  236 (314)
T ss_pred             eccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999986643221    1122345789999743 333 3556666   677777766767


Q ss_pred             CCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-h
Q psy6542         222 LHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-S  300 (334)
Q Consensus       222 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~  300 (334)
                      |.+.......+                         .+....  +.  .  .....+.++..  +...|...+|..|+ +
T Consensus       237 ~~~~~~~~~~~-------------------------~~~~~~--~~--~--~~~~~~~~l~~--li~~cl~~~p~~Rps~  283 (314)
T cd05099         237 YPGIPVEELFK-------------------------LLREGH--RM--D--KPSNCTHELYM--LMRECWHAVPTQRPTF  283 (314)
T ss_pred             CCCCCHHHHHH-------------------------HHHcCC--CC--C--CCCCCCHHHHH--HHHHHcCCCcccCcCH
Confidence            64432111110                         000000  00  0  01122233334  77888888888888 7


Q ss_pred             HHHHHHHHHHh
Q psy6542         301 QELLGSMARKA  311 (334)
Q Consensus       301 ~~lL~~l~~~~  311 (334)
                      .++++.+.+..
T Consensus       284 ~~ll~~l~~~~  294 (314)
T cd05099         284 KQLVEALDKVL  294 (314)
T ss_pred             HHHHHHHHHHH
Confidence            77877776654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.93  E-value=2.4e-25  Score=204.43  Aligned_cols=187  Identities=17%  Similarity=0.199  Sum_probs=142.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC---------
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN---------   82 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~---------   82 (334)
                      .++.+.||+|.++.+|+.||||.++...........+.+|+++++.++|||+        +++++++.+..         
T Consensus        17 ~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i--------~~~~~~~~~~~~~~~~~~~~   88 (302)
T cd07864          17 EGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNI--------VNLKEIVTDKQDALDFKKDK   88 (302)
T ss_pred             ccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCe--------eeeeheecCcchhhhccccC
Confidence            4678899999999999999999998665433344466789999999999999        99999887654         


Q ss_pred             -eEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          83 -SHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        83 -~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                       .+|+||||+++++..........   .....++.++.|++.||.|||+.+                |+||||||+||++
T Consensus        89 ~~~~lv~e~~~~~l~~~l~~~~~~---~~~~~~~~i~~qi~~aL~~LH~~~----------------i~H~dl~p~nili  149 (302)
T cd07864          89 GAFYLVFEYMDHDLMGLLESGLVH---FSEDHIKSFMKQLLEGLNYCHKKN----------------FLHRDIKCSNILL  149 (302)
T ss_pred             CcEEEEEcccCccHHHHHhcCCCC---CCHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEE
Confidence             79999999999843332322212   255666778889999999999999                9999999999999


Q ss_pred             CCCCCEEEEecccccccCCCCC---CccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         162 DEHGHVRISDLGLACDFSKKKP---HASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       162 ~~~~~vkl~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ++++.+||+|||++........   ....++..|++||+..  . ....+|+|+   ++|+++ .+.+||...+
T Consensus       150 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~-~g~~~~~~~~  222 (302)
T cd07864         150 NNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELF-TKKPIFQANQ  222 (302)
T ss_pred             CCCCcEEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHH-hCCCCCCCCC
Confidence            9999999999999986654432   1223467789999743  2 244566666   555554 5677776544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.93  E-value=6.8e-25  Score=195.86  Aligned_cols=184  Identities=14%  Similarity=0.074  Sum_probs=138.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++... ++..||+|.++.... ......+.+|+++++.++||||        +++++++...+..++||||+
T Consensus         5 ~g~~g~vy~~~~~-~~~~~a~K~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   74 (250)
T cd05085           5 KGNFGEVFKGTLK-DKTPVAVKTCKEDLP-QELKIKFLSEARILKQYDHPNI--------VKLIGVCTQRQPIYIVMELV   74 (250)
T ss_pred             CCCCceEEEEEec-CCcEEEEEecCCcCC-HHHHHHHHHHHHHHHhCCCCCc--------CeEEEEEecCCccEEEEECC
Confidence            4667799999865 688999999876543 2334467889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..........   ......+.++.|++.||.|+|+++                ++||||||+||++++++.+||+
T Consensus        75 ~~~~L~~~~~~~~~~---~~~~~~~~~~~~i~~~l~~lH~~~----------------~~H~dl~p~nili~~~~~~~l~  135 (250)
T cd05085          75 PGGDFLSFLRKKKDE---LKTKQLVKFALDAAAGMAYLESKN----------------CIHRDLAARNCLVGENNVLKIS  135 (250)
T ss_pred             CCCcHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHHhCC----------------eeecccChheEEEcCCCeEEEC
Confidence            988 43332222112   245556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCC---ccccCcccccccccccc--CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPH---ASVESDCILHGYIKKLG--GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~~~---~~~~t~~~~~~~v~~~~--~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++.........   ...++..|++||+...+  ...+|+|+   ++|+++..+..||.+
T Consensus       136 d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~  197 (250)
T cd05085         136 DFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPG  197 (250)
T ss_pred             CCccceeccccccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCC
Confidence            99999765443211   12234568899974322  34566666   667776657777644

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.93  E-value=5.1e-25  Score=197.33  Aligned_cols=184  Identities=14%  Similarity=0.136  Sum_probs=142.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++.+..+|+.||||.+..........+.+.+|+++++.++||||        +++++++.+.+..|+||||+
T Consensus        10 ~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd08218          10 EGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNI--------VQYQESFEENGNLYIVMDYC   81 (256)
T ss_pred             cCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCe--------eeeEeeecCCCeEEEEEecC
Confidence            4567799999999999999999998654434445577889999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .|+ + +.+.......   ......+.++.|++.||.|||+++                ++|+||+|+||+++.++.++|
T Consensus        82 ~~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~lh~~~----------------i~h~~l~~~nil~~~~~~~~l  142 (256)
T cd08218          82 EGGDLYKKINAQRGVL---FPEDQILDWFVQICLALKHVHDRK----------------ILHRDIKSQNIFLTKDGTIKL  142 (256)
T ss_pred             CCCcHHHHHHhccCCC---CCHHHHHHHHHHHHHHHHHHHhCC----------------EecCCCCHHHEEEcCCCCEEE
Confidence            887 3 3332222111   244556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC--CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP--HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       170 ~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      +|||++........  ....|+..|++||+..  .....+|.|+   ++|+++ .+..||.
T Consensus       143 ~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~-~g~~~~~  202 (256)
T cd08218         143 GDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMC-TLKHAFE  202 (256)
T ss_pred             eeccceeecCcchhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHH-cCCCCcc
Confidence            99999986654432  2234677899999843  2244677777   555555 4555653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.93  E-value=9.5e-25  Score=198.87  Aligned_cols=180  Identities=17%  Similarity=0.052  Sum_probs=132.8

Q ss_pred             CCCceEEEece----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--CCeEE
Q psy6542          12 RVSKWRVKPPS----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--PNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--~~~~~   85 (334)
                      +++...||++.    ...++..||+|.++..... .....+.+|+++++.++||||        +++++++..  +..+|
T Consensus        14 ~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~   84 (283)
T cd05080          14 EGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQ-QNTSGWKKEINILKTLYHENI--------VKYKGCCSEQGGKGLQ   84 (283)
T ss_pred             cCCCcEEEEeeEccccCCCCceEEEEEeccccCh-HHHHHHHHHHHHHHhCCCCCE--------eeEEEEEecCCCceEE
Confidence            56677886653    5567889999999865332 234567789999999999999        999998764  34689


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      ++|||++++ +.......  .   ......+.++.|++.||.|||+++                ++||||||+||+++++
T Consensus        85 lv~e~~~~~~l~~~~~~~--~---l~~~~~~~i~~~l~~~l~~lH~~~----------------i~H~dlkp~Nili~~~  143 (283)
T cd05080          85 LIMEYVPLGSLRDYLPKH--K---LNLAQLLLFAQQICEGMAYLHSQH----------------YIHRDLAARNVLLDND  143 (283)
T ss_pred             EEecCCCCCCHHHHHHHc--C---CCHHHHHHHHHHHHHHHHHHHHCC----------------eeccccChheEEEcCC
Confidence            999999988 43332221  2   255566778889999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCC-----CccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKKP-----HASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                      +.++|+|||+++.......     ....++..|++||... . ....+|+|+   ++|+++++ ..|+
T Consensus       144 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg-~~p~  210 (283)
T cd05080         144 RLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTH-CDSK  210 (283)
T ss_pred             CcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhC-CCCC
Confidence            9999999999986654322     1223456688899743 2 244566666   66666654 4454

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.93  E-value=8e-25  Score=195.74  Aligned_cols=184  Identities=20%  Similarity=0.173  Sum_probs=142.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||+|.+..+++.||||.+..........+.+.+|+++++.++|||+        +++++.+..++.+++||||+
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd08220          10 RGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNI--------IEYYENFLEDKALMIVMEYA   81 (256)
T ss_pred             ccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCch--------hheeeeEecCCEEEEEEecC
Confidence            4567899999999999999999998765544456678899999999999999        99999999999999999999


Q ss_pred             CCC-hh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-CEE
Q psy6542          92 SGP-KD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-HVR  168 (334)
Q Consensus        92 ~g~-l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-~vk  168 (334)
                      +|+ +. .+.......+   ....++.++.|++.||.|||+++                ++|+||||+||++++++ .+|
T Consensus        82 ~~~~L~~~~~~~~~~~~---~~~~~~~~~~~i~~~l~~lh~~~----------------i~h~dl~~~nil~~~~~~~~~  142 (256)
T cd08220          82 PGGTLAEYIQKRCNSLL---DEDTILHFFVQILLALHHVHTKL----------------ILHRDLKTQNILLDKHKMVVK  142 (256)
T ss_pred             CCCCHHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEEcCCCCEEE
Confidence            987 43 3322221122   44556677789999999999999                99999999999998654 579


Q ss_pred             EEecccccccCCCCC-CccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP-HASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       169 l~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      |+|||++........ ....++..|++||+...  .+..+|+|+   ++|+++.+ ..||.
T Consensus       143 l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~-~~~~~  202 (256)
T cd08220         143 IGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASL-KRAFE  202 (256)
T ss_pred             EccCCCceecCCCccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhC-CCCcc
Confidence            999999987655432 33457888999998532  244566676   55666554 44553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.93  E-value=3.9e-25  Score=202.89  Aligned_cols=247  Identities=12%  Similarity=0.016  Sum_probs=161.7

Q ss_pred             CCCCceEEEeceeCC----------------CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeE
Q psy6542          11 SRVSKWRVKPPSLKP----------------LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNL   74 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~----------------~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~   74 (334)
                      .+++...||++.+..                ++..||+|+++.... ......+.+|+++++.++|+||        +++
T Consensus        14 g~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~-~~~~~~~~~E~~~l~~l~~~~i--------~~~   84 (296)
T cd05095          14 GEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDAN-KNARNDFLKEIKIMSRLKDPNI--------IRL   84 (296)
T ss_pred             cCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCc--------ceE
Confidence            356777899885433                455799999985533 3344578889999999999999        999


Q ss_pred             EEEeecCCeEEEEEEccCCC-hhHHhhhhh-hh------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCC
Q psy6542          75 YKVTSEPNSHYIIGVRQSGP-KDQISRSKI-NR------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSV  146 (334)
Q Consensus        75 ~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~-~~------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~  146 (334)
                      ++++..++..|+||||+.++ +..+..... ..      ........++.++.|++.||.|||+.+              
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--------------  150 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLN--------------  150 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCC--------------
Confidence            99999999999999999887 433322211 10      011234456778889999999999999              


Q ss_pred             CcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCCCc----cccCcccccccccc-cc-CCcceeeh---hHHHHHcC
Q psy6542         147 PCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHA----SVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFP  217 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~~~----~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~  217 (334)
                        ++||||||+||++++++.++|+|||+++.+.......    ..++..|++||+.. .. +..+|+|+   ++|+++..
T Consensus       151 --i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~  228 (296)
T cd05095         151 --FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTL  228 (296)
T ss_pred             --eecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHh
Confidence              9999999999999999999999999998664433211    22345678888632 22 44566676   67777652


Q ss_pred             -CCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccc
Q psy6542         218 -NRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSA  296 (334)
Q Consensus       218 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  296 (334)
                       +..||...+..   +.+.               ......... .     .....+.....++.+.+  +..+|...+|.
T Consensus       229 ~~~~p~~~~~~~---~~~~---------------~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~--li~~cl~~~p~  282 (296)
T cd05095         229 CKEQPYSQLSDE---QVIE---------------NTGEFFRDQ-G-----RQVYLPKPALCPDSLYK--LMLSCWRRNAK  282 (296)
T ss_pred             CCCCCccccChH---HHHH---------------HHHHHHhhc-c-----ccccCCCCCCCCHHHHH--HHHHHcCCCcc
Confidence             55565443211   1000               000000000 0     00001111223344445  88888899999


Q ss_pred             cch-hHHHHHHHH
Q psy6542         297 HKC-SQELLGSMA  308 (334)
Q Consensus       297 ~r~-~~~lL~~l~  308 (334)
                      .|+ +.++++.|.
T Consensus       283 ~Rp~~~~i~~~l~  295 (296)
T cd05095         283 ERPSFQEIHATLL  295 (296)
T ss_pred             cCCCHHHHHHHHh
Confidence            999 777777664

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=7.8e-25  Score=200.07  Aligned_cols=189  Identities=20%  Similarity=0.204  Sum_probs=142.5

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--CCeEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--PNSHYIIG   88 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--~~~~~ivm   88 (334)
                      ..++...||++.+..+++.||+|.+...... .....+.+|+++++.++||||        +++++++.+  ++.+|+||
T Consensus        10 g~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621          10 GEGAGGSVTKCRLKNTGMIFALKTITTDPNP-DLQKQILRELEINKSCKSPYI--------VKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             ccCCceEEEEEEECCCCeEEEEEEEecCCch-HHHHHHHHHHHHHHhCCCCCe--------eeeeeEEEccCCCeEEEEE
Confidence            4577789999999999999999999865443 344567889999999999999        999998864  45789999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||++|+ +..+..................++.|++.||.|||+.+                ++|+||+|+||+++.++.+
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~----------------i~H~dl~~~nil~~~~~~~  144 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRK----------------IIHRDIKPSNILLTRKGQV  144 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEEecCCeE
Confidence            999987 43332221111122345556777889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       168 kl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|+|||++............++..|++||... .. +..+|+|+   ++|++ .++..||...
T Consensus       145 ~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l-~~g~~p~~~~  206 (287)
T cd06621         145 KLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEV-AQNRFPFPPE  206 (287)
T ss_pred             EEeeccccccccccccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHH-HhCCCCCCcc
Confidence            99999999866554444455677889999743 22 44566666   45555 4566676554

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.93  E-value=6.5e-25  Score=202.85  Aligned_cols=183  Identities=15%  Similarity=0.058  Sum_probs=141.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++.+.||++.++.+++.||||.+..... .....+.+.+|+++++.++|+|+        +++++++..++..|+||||
T Consensus        25 ~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~   96 (308)
T cd06634          25 HGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNT--------IQYRGCYLREHTAWLVMEY   96 (308)
T ss_pred             eCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCc--------ccEEEEEEcCCeeEEEEEc
Confidence            46678999999999999999999976433 33344567789999999999999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +.|++..+.......+   ....+..++.|++.||.|||+.+                ++||||||+||++++++.++|+
T Consensus        97 ~~~~l~~~~~~~~~~l---~~~~~~~~~~~l~~~l~~LH~~~----------------i~H~dl~p~nil~~~~~~~kl~  157 (308)
T cd06634          97 CLGSASDLLEVHKKPL---QEVEIAAVTHGALQGLAYLHSHN----------------MIHRDVKAGNILLSEPGLVKLG  157 (308)
T ss_pred             cCCCHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCHHhEEECCCCcEEEC
Confidence            9887543333222222   44555677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCccccCcccccccccc-----ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPHASVESDCILHGYIKK-----LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~t~~~~~~~v~~-----~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++......  ....++..|++||...     .....+|+|+   ++|++ ..+..||..
T Consensus       158 dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el-~~g~~p~~~  216 (308)
T cd06634         158 DFGSASIMAPA--NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL-AERKPPLFN  216 (308)
T ss_pred             CcccceeecCc--ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHH-HcCCCCCcc
Confidence            99999765443  2345778899999742     2244566666   55555 455656544

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.93  E-value=4.7e-25  Score=211.14  Aligned_cols=187  Identities=17%  Similarity=0.101  Sum_probs=138.9

Q ss_pred             CCCceEEEecee-----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSL-----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~-----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++...||+|.+     ..++..||||+++...... ..+.+.+|++++..+. ||||        |++++++.+++.+|
T Consensus        47 ~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~-~~~~~~~E~~~l~~l~~H~ni--------v~~~~~~~~~~~~~  117 (401)
T cd05107          47 SGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSS-EKQALMSELKIMSHLGPHLNI--------VNLLGACTKGGPIY  117 (401)
T ss_pred             CCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChh-HHHHHHHHHHHHHhcCCCCCe--------EEEEEEEccCCCcE
Confidence            467789999985     4466789999998654432 3346788999999997 9999        99999999999999


Q ss_pred             EEEEccCCC--hhHHhhhhhh-----------------------------------------------------------
Q psy6542          86 IIGVRQSGP--KDQISRSKIN-----------------------------------------------------------  104 (334)
Q Consensus        86 ivmEy~~g~--l~~l~~~~~~-----------------------------------------------------------  104 (334)
                      +||||++||  .+++......                                                           
T Consensus       118 iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (401)
T cd05107         118 IITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKG  197 (401)
T ss_pred             EEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchh
Confidence            999999998  3444332100                                                           


Q ss_pred             ----------------------------------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE
Q psy6542         105 ----------------------------------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH  150 (334)
Q Consensus       105 ----------------------------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii  150 (334)
                                                        .........++.++.|++.||.|||+.+                ++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~----------------iv  261 (401)
T cd05107         198 TVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKN----------------CV  261 (401)
T ss_pred             hhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC----------------cC
Confidence                                              0001123345677889999999999999                99


Q ss_pred             eeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCC
Q psy6542         151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       151 HrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~  221 (334)
                      ||||||+|||+++++.+||+|||+++.......    ....++..|++||... .. .+.+|+|+   ++|+++..+..|
T Consensus       262 Hrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P  341 (401)
T cd05107         262 HRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTP  341 (401)
T ss_pred             cccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999986543321    2234567789999743 22 44566666   777887756666


Q ss_pred             CC
Q psy6542         222 LH  223 (334)
Q Consensus       222 ~~  223 (334)
                      |.
T Consensus       342 ~~  343 (401)
T cd05107         342 YP  343 (401)
T ss_pred             CC
Confidence            53

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.93  E-value=5.4e-25  Score=199.25  Aligned_cols=189  Identities=12%  Similarity=0.043  Sum_probs=138.3

Q ss_pred             CCCceEEEeceeCCCCCc--EEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFP--IQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~--vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      .++...||+|..+.++..  +|+|.++.... ....+.+.+|+++++++ +||||        +++++++...+.+|+||
T Consensus         5 ~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~i--------v~~~~~~~~~~~~~lv~   75 (270)
T cd05047           5 EGNFGQVLKARIKKDGLRMDAAIKRMKEYAS-KDDHRDFAGELEVLCKLGHHPNI--------INLLGACEHRGYLYLAI   75 (270)
T ss_pred             CCCCceEEEEEEcCCCCeeEEEEEEccccCC-HHHHHHHHHHHHHHHhhccCCCe--------eeEEEEEecCCCceEEE
Confidence            467789999999988864  58888874332 23345677899999999 79999        99999999999999999


Q ss_pred             EccCCC-h-hHHhhhhhh-----------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCC
Q psy6542          89 VRQSGP-K-DQISRSKIN-----------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK  155 (334)
Q Consensus        89 Ey~~g~-l-~~l~~~~~~-----------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlK  155 (334)
                      ||+.++ + +++......           ..........+.++.|++.||.|||+.+                ++|||||
T Consensus        76 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~----------------i~H~dik  139 (270)
T cd05047          76 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ----------------FIHRDLA  139 (270)
T ss_pred             EeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCC----------------Eeecccc
Confidence            999887 4 333322110           0111245556778889999999999999                9999999


Q ss_pred             CCceeeCCCCCEEEEecccccccCCCCCCc-cccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         156 PANILLDEHGHVRISDLGLACDFSKKKPHA-SVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       156 p~NiLl~~~~~vkl~DFGla~~~~~~~~~~-~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |+||++++++.+||+|||++.......... ...+..|++||+.. .. ...+|+|+   ++|+++..+..||.+.
T Consensus       140 p~nili~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~  215 (270)
T cd05047         140 ARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM  215 (270)
T ss_pred             cceEEEcCCCeEEECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCcccc
Confidence            999999999999999999986433221111 22345688999742 23 34566666   6777776677777543

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.93  E-value=1.6e-25  Score=205.52  Aligned_cols=181  Identities=17%  Similarity=0.189  Sum_probs=141.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++.+..++..||||.+.....  ...+.+.+|+.+++.++|+|+        +++++.+..++..|+||||+
T Consensus        32 ~g~~g~v~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i--------i~~~~~~~~~~~~~lv~e~~  101 (292)
T cd06658          32 EGSTGIVCIATEKHTGKQVAVKKMDLRKQ--QRRELLFNEVVIMRDYHHENV--------VDMYNSYLVGDELWVVMEFL  101 (292)
T ss_pred             CCCCeEEEEEEECCCCCEEEEEEEecchH--HHHHHHHHHHHHHHhCCCCcH--------HHHHHheecCCeEEEEEeCC
Confidence            56778999999999999999999875432  234567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+....  .+   .....+.++.||+.||.|||+++                ++||||||+||++++++.++|+
T Consensus       102 ~~~~L~~~~~~~--~l---~~~~~~~~~~qi~~~l~~LH~~~----------------ivH~dlkp~Nill~~~~~~kL~  160 (292)
T cd06658         102 EGGALTDIVTHT--RM---NEEQIATVCLSVLRALSYLHNQG----------------VIHRDIKSDSILLTSDGRIKLS  160 (292)
T ss_pred             CCCcHHHHHhcC--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeecCCCHHHEEEcCCCCEEEc
Confidence            988 43333221  22   34556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC--CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP--HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~~--~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++........  ....++..|++||+..  ..+..+|+|+   ++|+++. +..||..
T Consensus       161 dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~-g~~p~~~  220 (292)
T cd06658         161 DFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMID-GEPPYFN  220 (292)
T ss_pred             cCcchhhcccccccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Confidence            9999976543322  3345788899999842  2345677777   6677665 5556654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.93  E-value=8e-25  Score=195.28  Aligned_cols=187  Identities=17%  Similarity=0.144  Sum_probs=146.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||++.+..++..||+|.+..........+.+.+|+++++.++|+|+        +++++.+..++..++||||+
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~--------~~~~~~~~~~~~~~lv~e~~   81 (258)
T cd08215          10 KGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNI--------IKYYESFEEKGKLCIVMEYA   81 (258)
T ss_pred             cCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCCh--------hheEEEEecCCEEEEEEEec
Confidence            5788999999999999999999998766655566678889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +.....................++.|++.||.|||+.+                ++|+||+|+||++++++.++|+
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~----------------~~H~dl~~~nil~~~~~~~~l~  145 (258)
T cd08215          82 DGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRK----------------ILHRDIKPQNIFLTSNGLVKLG  145 (258)
T ss_pred             CCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCC----------------EecccCChHHeEEcCCCcEEEC
Confidence            987 43333332111122355666778889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      |||++.......  .....+++.|++||... . ....+|+|+   ++++++ .+..||.
T Consensus       146 d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~-~g~~p~~  204 (258)
T cd08215         146 DFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELC-TLKHPFE  204 (258)
T ss_pred             CccceeecccCcceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHH-cCCCCCC
Confidence            999998765553  23346788899999742 2 244566666   556665 4555653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.93  E-value=3.6e-25  Score=206.82  Aligned_cols=243  Identities=11%  Similarity=0.029  Sum_probs=162.8

Q ss_pred             CCCCceEEEeceeCCC-------CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCC
Q psy6542          11 SRVSKWRVKPPSLKPL-------GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPN   82 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~-------~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~   82 (334)
                      ..++.+.||+|.+...       +..||+|.++..... ...+.+.+|+++++++ +||||        +++++++..++
T Consensus        21 g~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~E~~~l~~l~~h~~i--------v~~~~~~~~~~   91 (334)
T cd05100          21 GEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATD-KDLSDLVSEMEMMKMIGKHKNI--------INLLGACTQDG   91 (334)
T ss_pred             ccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCH-HHHHHHHHHHHHHHhhcCCCCe--------eeeeEEEccCC
Confidence            4567788999976432       346899988754332 2345678899999999 79999        99999999999


Q ss_pred             eEEEEEEccCCC-hh-HHhhhhhh-----------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcE
Q psy6542          83 SHYIIGVRQSGP-KD-QISRSKIN-----------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCL  149 (334)
Q Consensus        83 ~~~ivmEy~~g~-l~-~l~~~~~~-----------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~i  149 (334)
                      .+|++|||+.++ +. ++......           ..........+.++.|++.||.|||+++                +
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g----------------i  155 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQK----------------C  155 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC----------------e
Confidence            999999999887 43 33221100           0112244556677889999999999999                9


Q ss_pred             EeeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCC
Q psy6542         150 HFRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRL  220 (334)
Q Consensus       150 iHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~  220 (334)
                      +||||||+||+++.++.+||+|||+++.......    ....++..|++||+.. . ....+|+|+   ++|+++..+..
T Consensus       156 vH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~  235 (334)
T cd05100         156 IHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGS  235 (334)
T ss_pred             eccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999986654321    1122345789999743 2 344566666   66777765666


Q ss_pred             CCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-
Q psy6542         221 ELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-  299 (334)
Q Consensus       221 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-  299 (334)
                      ||.+.+....                         ...+...    ...+  .....+..+..  +...|...+|..|+ 
T Consensus       236 p~~~~~~~~~-------------------------~~~~~~~----~~~~--~~~~~~~~l~~--li~~cl~~~p~~Rps  282 (334)
T cd05100         236 PYPGIPVEEL-------------------------FKLLKEG----HRMD--KPANCTHELYM--IMRECWHAVPSQRPT  282 (334)
T ss_pred             CCCCCCHHHH-------------------------HHHHHcC----CCCC--CCCCCCHHHHH--HHHHHcccChhhCcC
Confidence            6643321100                         0000000    0000  11122233344  66777778888888 


Q ss_pred             hHHHHHHHHHHh
Q psy6542         300 SQELLGSMARKA  311 (334)
Q Consensus       300 ~~~lL~~l~~~~  311 (334)
                      +.++++.+.+..
T Consensus       283 ~~ell~~l~~~~  294 (334)
T cd05100         283 FKQLVEDLDRVL  294 (334)
T ss_pred             HHHHHHHHHHHh
Confidence            888888887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG4279|consensus

Probab=99.93  E-value=3.2e-26  Score=219.84  Aligned_cols=229  Identities=15%  Similarity=0.110  Sum_probs=170.6

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      +--+-||.|++..|....|||.+....  ++..+-+.+|+.+.++|+|.||        |++.+.+.+++.+-|.||-++
T Consensus       586 GTYG~VYA~RD~~tqvrIaIKEIpekd--sr~~QPLhEEIaLH~~LrHkNI--------VrYLGs~senGf~kIFMEqVP  655 (1226)
T KOG4279|consen  586 GTYGTVYAARDMDTQVRIAIKEIPEKD--SREVQPLHEEIALHSTLRHKNI--------VRYLGSVSENGFFKIFMEQVP  655 (1226)
T ss_pred             CceeEEEeeccccceeEEEeeeccccc--chhhccHHHHHHHHHHHhhHhH--------HHHhhccCCCCeEEEEeecCC
Confidence            344689999999999999999998443  3456788899999999999999        999999999999999999999


Q ss_pred             CC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-CCCEEEE
Q psy6542          93 GP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-HGHVRIS  170 (334)
Q Consensus        93 g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-~~~vkl~  170 (334)
                      || +..+.+++-+.+.. .+..+-.+..||+.||.|||++.                |+|||||-+|+|++- .|.+||+
T Consensus       656 GGSLSsLLrskWGPlKD-NEstm~fYtkQILeGLkYLHen~----------------IVHRDIKGDNVLvNTySGvlKIS  718 (1226)
T KOG4279|consen  656 GGSLSSLLRSKWGPLKD-NESTMNFYTKQILEGLKYLHENK----------------IVHRDIKGDNVLVNTYSGVLKIS  718 (1226)
T ss_pred             CCcHHHHHHhccCCCcc-chhHHHHHHHHHHHHhhhhhhcc----------------eeeccccCCcEEEeeccceEEec
Confidence            99 66666665444411 23333344569999999999999                999999999999975 5889999


Q ss_pred             ecccccccCCCC--CCccccCccccccccccc---cC-Ccceeeh--hHHHHHcCCCCCCCCCCCCC--cccchhccccc
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKKL---GG-PFVSAWQ--TRYAKLFPNRLELHPESGQS--KPELIFMDQIE  240 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~---~~-~~~~~w~--~~~~~l~~~~~~~~~~~~~~--~~~~i~~~~~~  240 (334)
                      |||.++.+..-.  +.++.||..||+||+.+.   || ..+|+|+  |....|+++++||.-.....  -+.+=+.....
T Consensus       719 DFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP  798 (1226)
T KOG4279|consen  719 DFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHP  798 (1226)
T ss_pred             ccccchhhccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCC
Confidence            999998664433  567889999999999543   34 4566677  66666788999997665321  12222223333


Q ss_pred             ccccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         241 EVSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       241 ~~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      ++|..++- ..+.+|...+..+|..|...
T Consensus       799 ~iPeelsa-eak~FilrcFepd~~~R~sA  826 (1226)
T KOG4279|consen  799 PIPEELSA-EAKNFILRCFEPDPCDRPSA  826 (1226)
T ss_pred             CCcHHHHH-HHHHHHHHHcCCCcccCccH
Confidence            44433331 45566777777777766654

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.93  E-value=1.3e-25  Score=203.86  Aligned_cols=184  Identities=14%  Similarity=0.109  Sum_probs=138.6

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecC--CeEEEEEE
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEP--NSHYIIGV   89 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~--~~~~ivmE   89 (334)
                      ++...||++.++.+++.||||.++....+... .....|+.++..+. |+|+        +++++++.++  +.+++|||
T Consensus        10 g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~-~~~~~e~~~l~~l~~h~~i--------~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831          10 GTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQ-VNNLREIQALRRLSPHPNI--------LRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             cccceEEEEEEcCCCcEEEEEEehhccCCchh-hhHHHHHHHHhhcCCCCCc--------cceEEEEecCCCCcEEEEEe
Confidence            56679999999999999999998865432222 23346888888885 9999        9999999977  88999999


Q ss_pred             ccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          90 RQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        90 y~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |++|++..........+   ....++.++.|++.||.|||+.+                ++||||||+||++++ +.+||
T Consensus        81 ~~~~~l~~~l~~~~~~~---~~~~~~~~~~qi~~~L~~LH~~~----------------i~H~dl~p~ni~l~~-~~~kl  140 (282)
T cd07831          81 LMDMNLYELIKGRKRPL---PEKRVKSYMYQLLKSLDHMHRNG----------------IFHRDIKPENILIKD-DILKL  140 (282)
T ss_pred             cCCccHHHHHHhccCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ceecccCHHHEEEcC-CCeEE
Confidence            99988433223221222   45556677789999999999999                999999999999999 99999


Q ss_pred             EecccccccCCCCC-CccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP-HASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||+++....... ....++..|++||+..  . ....+|+|+   ++|++ +++.+||.+.+
T Consensus       141 ~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el-~~~~~p~~~~~  203 (282)
T cd07831         141 ADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEI-LSLFPLFPGTN  203 (282)
T ss_pred             EecccccccccCCCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHH-HcCCcCCCCCC
Confidence            99999987654433 2345688899999632  2 244566666   45555 45677876654

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.93  E-value=2.3e-25  Score=204.91  Aligned_cols=183  Identities=17%  Similarity=0.175  Sum_probs=142.9

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++...||+|.+..+++.||||.+......  ..+.+.+|+.+++.++|||+        +++++++..++..|+||||
T Consensus        30 g~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~--~~~~~~~e~~~l~~l~hp~i--------~~~~~~~~~~~~~~iv~e~   99 (297)
T cd06659          30 GEGSTGIVCIAREKHSGRQVAVKMMDLRKQQ--RRELLFNEVVIMRDYQHQNV--------VEMYKSYLVGEELWVLMEF   99 (297)
T ss_pred             CCCCceeEEEEEEcCCCCEEEEEEEEecccc--hHHHHHHHHHHHHhCCCCch--------hhhhhheeeCCeEEEEEec
Confidence            3567789999999999999999999754432  23457789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+...  ..+   ....++.++.|++.||.|||+.+                ++||||||+||+++.++.+||
T Consensus       100 ~~~~~L~~~~~~--~~~---~~~~~~~~~~qi~~~L~~LH~~~----------------ivH~dl~p~Nill~~~~~~kL  158 (297)
T cd06659         100 LQGGALTDIVSQ--TRL---NEEQIATVCESVLQALCYLHSQG----------------VIHRDIKSDSILLTLDGRVKL  158 (297)
T ss_pred             CCCCCHHHHHhh--cCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHeEEccCCcEEE
Confidence            9988 4443322  122   44556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||++.......  .....++..|++||+..  .....+|+|+   ++|+++. +..||...
T Consensus       159 ~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~  220 (297)
T cd06659         159 SDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVD-GEPPYFSD  220 (297)
T ss_pred             eechhHhhcccccccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHh-CCCCCCCC
Confidence            9999998654432  23356788999999853  2344567777   5666654 56676543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.93  E-value=8.7e-25  Score=197.10  Aligned_cols=184  Identities=20%  Similarity=0.217  Sum_probs=138.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~i   86 (334)
                      .++...||++.+..+|..||||.+.....   .....+.+.+|+++++.++||||        +++++++.+.  ..+|+
T Consensus        12 ~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~~   83 (265)
T cd06652          12 QGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERI--------VQYYGCLRDPMERTLSI   83 (265)
T ss_pred             cCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCe--------eeEEeEeccCCCceEEE
Confidence            35667999999999999999999875432   22334577889999999999999        9999988753  56899


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +|||++|+ +....... ...   .......++.|++.||.|||+.+                ++|+||||+||++++++
T Consensus        84 v~e~~~~~~L~~~l~~~-~~~---~~~~~~~~~~~l~~~l~~lH~~~----------------i~H~dl~p~nil~~~~~  143 (265)
T cd06652          84 FMEHMPGGSIKDQLKSY-GAL---TENVTRKYTRQILEGVSYLHSNM----------------IVHRDIKGANILRDSVG  143 (265)
T ss_pred             EEEecCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EecCCCCHHHEEecCCC
Confidence            99999987 43332221 122   33445667789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCC-----CCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKK-----KPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~-----~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .++|+|||+++.....     ......++..|++||+.. .. ...+|+|+   ++|+++ .+..||..
T Consensus       144 ~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~-~g~~p~~~  211 (265)
T cd06652         144 NVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEML-TEKPPWAE  211 (265)
T ss_pred             CEEECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHh-hCCCCCCc
Confidence            9999999999865332     122345788899999843 22 34566666   566665 45667643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.93  E-value=1.4e-25  Score=203.71  Aligned_cols=186  Identities=19%  Similarity=0.171  Sum_probs=144.9

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      ++.+.||+|.+..+|+.+|+|.++...........+.+|+++++.++|+|+        +++++++..++.+|+||||++
T Consensus        10 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~v~e~~~   81 (283)
T cd05118          10 GTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNI--------IKLLDVFRHKGDLYLVFEFMD   81 (283)
T ss_pred             CCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCc--------chHHHhhccCCCEEEEEeccC
Confidence            556789999999999999999998665543445677789999999999999        999999999999999999999


Q ss_pred             CChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEec
Q psy6542          93 GPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDL  172 (334)
Q Consensus        93 g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DF  172 (334)
                      +++...........   .......++.|++.||.|||+.+                ++|+||||+||++++++.++|+||
T Consensus        82 ~~l~~~l~~~~~~~---~~~~~~~~~~~i~~~l~~LH~~~----------------i~H~dl~p~nili~~~~~~~l~df  142 (283)
T cd05118          82 TDLYKLIKDRQRGL---PESLIKSYLYQLLQGLAFCHSHG----------------ILHRDLKPENLLINTEGVLKLADF  142 (283)
T ss_pred             CCHHHHHHhhcccC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeecCcCHHHEEECCCCcEEEeee
Confidence            88544433322222   44556677789999999999999                999999999999999999999999


Q ss_pred             ccccccCCCC--CCccccCcccccccccc---ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         173 GLACDFSKKK--PHASVESDCILHGYIKK---LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       173 Gla~~~~~~~--~~~~~~t~~~~~~~v~~---~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |++.......  .....++..|++||+..   .....+|.|+   ++|+++ ++..+|.+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~-tg~~~~~~~~  203 (283)
T cd05118         143 GLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELL-SRRPLFPGKS  203 (283)
T ss_pred             eeeEecCCCcccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHH-hCCCCCCCCC
Confidence            9998775543  12234677889999742   2344667777   455554 5567776554

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.93  E-value=8.2e-25  Score=196.27  Aligned_cols=178  Identities=15%  Similarity=0.161  Sum_probs=132.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee-cCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS-EPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~-~~~~~~ivmEy   90 (334)
                      +++...||++...  |..||+|.++...    ..+.+.+|+.+++.++|+|+        +++++++. .++..|++|||
T Consensus        16 ~g~~~~v~~~~~~--~~~~~~k~~~~~~----~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~lv~e~   81 (256)
T cd05082          16 KGEFGDVMLGDYR--GNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNL--------VQLLGVIVEEKGGLYIVTEY   81 (256)
T ss_pred             ccCCCeEEEEEEc--CCcEEEEEeCCCc----hHHHHHHHHHHHHhCCCCCe--------eeEEEEEEcCCCceEEEEEC
Confidence            4555689988654  7889999987433    23467789999999999999        99998754 55679999999


Q ss_pred             cCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++++ + +++.....   ........+.++.|++.||.|||+++                ++||||||+||++++++.+|
T Consensus        82 ~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dlkp~nil~~~~~~~k  142 (256)
T cd05082          82 MAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLEANN----------------FVHRDLAARNVLVSEDNVAK  142 (256)
T ss_pred             CCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHhCC----------------EeccccchheEEEcCCCcEE
Confidence            9987 4 33322221   11245556677889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCCCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKPHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      |+|||++........ ...++..|++||+... . ...+|+|+   ++|+++..+.+||.
T Consensus       143 l~dfg~~~~~~~~~~-~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~  201 (256)
T cd05082         143 VSDFGLTKEASSTQD-TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP  201 (256)
T ss_pred             ecCCccceeccccCC-CCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCC
Confidence            999999986544332 2334567899997432 2 34566666   66777665777754

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.93  E-value=1.5e-25  Score=203.68  Aligned_cols=188  Identities=18%  Similarity=0.173  Sum_probs=145.6

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHYIIG   88 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~ivm   88 (334)
                      ..++.+.||+|.+..+|+.||+|.+..........+.+.+|+++++.++|+|+        +++++++...  +..|+||
T Consensus         8 ~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           8 GEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNI--------VRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             ccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCe--------eeheeeEecCCCCcEEEEe
Confidence            34678899999999999999999999765433344567789999999999999        9999999987  8899999


Q ss_pred             EccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          89 VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        89 Ey~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||+++++..+......   .......+.++.|++.||.|||+.+                ++|+||||+||++++++.++
T Consensus        80 e~~~~~l~~~~~~~~~---~~~~~~~~~i~~~i~~al~~LH~~~----------------~~h~dl~p~nil~~~~~~~~  140 (287)
T cd07840          80 EYMDHDLTGLLDSPEV---KFTESQIKCYMKQLLEGLQYLHSNG----------------ILHRDIKGSNILINNDGVLK  140 (287)
T ss_pred             ccccccHHHHHhccCC---CCCHHHHHHHHHHHHHHHHHHHHCC----------------ceeccCcHHHeEEcCCCCEE
Confidence            9999885444333211   2255566778889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC---CCccccCcccccccccc---ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK---PHASVESDCILHGYIKK---LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~---~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||++.......   .....++..|++||...   .....+|+|+   ++|+++. +..||....
T Consensus       141 l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t-~~~p~~~~~  206 (287)
T cd07840         141 LADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFL-GKPIFQGST  206 (287)
T ss_pred             EccccceeeccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHh-CCCCCCCCC
Confidence            99999998775553   22234577899999632   2244566676   5566654 566765544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.93  E-value=9.9e-25  Score=198.53  Aligned_cols=184  Identities=10%  Similarity=0.098  Sum_probs=137.8

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEee------cCCe
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTS------EPNS   83 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~------~~~~   83 (334)
                      ..++.+.||+|.+..+++.||+|++.....   ....+..|+.+++.+ +|+|+        +++++++.      .++.
T Consensus        25 g~g~~~~v~~~~~~~~~~~~a~K~~~~~~~---~~~~~~~e~~~l~~~~~h~~i--------~~~~~~~~~~~~~~~~~~   93 (282)
T cd06636          25 GNGTYGQVYKGRHVKTGQLAAIKVMDVTED---EEEEIKLEINMLKKYSHHRNI--------ATYYGAFIKKSPPGHDDQ   93 (282)
T ss_pred             ccCCCeEEEEEEEcCCCcEEEEEEEecChH---HHHHHHHHHHHHHHhcCCCcE--------EEEeeehhcccccCCCCE
Confidence            457888999999999999999999875432   223567799999988 69999        99999985      3467


Q ss_pred             EEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          84 HYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      +|++|||+.++ +..+......  .......++.++.|++.||.|||+.+                ++||||||+||+++
T Consensus        94 ~~iv~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~~~----------------ivH~dl~~~nili~  155 (282)
T cd06636          94 LWLVMEFCGAGSVTDLVKNTKG--NALKEDWIAYICREILRGLAHLHAHK----------------VIHRDIKGQNVLLT  155 (282)
T ss_pred             EEEEEEeCCCCcHHHHHHHccC--CCCCHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEEC
Confidence            89999999987 4443332211  11234555667789999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCC--CCCccccCcccccccccc------ccC-Ccceeeh---hHHHHHcCCCCCCCC
Q psy6542         163 EHGHVRISDLGLACDFSKK--KPHASVESDCILHGYIKK------LGG-PFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~------~~~-~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +++.++|+|||++......  ......|+..|++||+..      ..+ ..+|.|+   ++|+++. +.+||..
T Consensus       156 ~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~-g~~p~~~  228 (282)
T cd06636         156 ENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAE-GAPPLCD  228 (282)
T ss_pred             CCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHh-CCCCccc
Confidence            9999999999999865432  233456788999999742      123 3456666   5666655 5667644

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.93  E-value=3.8e-25  Score=197.72  Aligned_cols=189  Identities=15%  Similarity=0.079  Sum_probs=146.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||++.++.+++.+|||.+............+.+|+++++.++|+||        +++++++.+++..|+||||+
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd08530          10 KGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNI--------ISYKEAFLDGNKLCIVMEYA   81 (256)
T ss_pred             CCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCc--------hhhhhhhccCCEEEEEehhc
Confidence            4677889999999999999999998765544445567789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..................++.++.|++.||.|||+.+                ++|+||+|+||++++++.+||+
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~----------------i~h~~l~~~ni~~~~~~~~kl~  145 (256)
T cd08530          82 PFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQK----------------ILHRDLKSANILLVANDLVKIG  145 (256)
T ss_pred             CCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCC----------------cccCCCCcceEEEecCCcEEEe
Confidence            887 44332321111122345556778889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++............++..|++||... .. ...+|+|+   ++|++ ..+..||...
T Consensus       146 d~g~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l-~~g~~p~~~~  204 (256)
T cd08530         146 DLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEM-ATFAPPFEAR  204 (256)
T ss_pred             eccchhhhccCCcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHH-HhCCCCCCCC
Confidence            99999877666555566788899999742 22 33566676   55555 5566676443

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0983|consensus

Probab=99.93  E-value=8.6e-26  Score=196.58  Aligned_cols=187  Identities=14%  Similarity=0.152  Sum_probs=149.8

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      ++.+.|++++.+.+|...|||.++...... ..+++...+.++.+.. .|.|        |+-|++|..+..++|.||.|
T Consensus       103 GtcG~V~k~~~rs~~~iiAVK~M~rt~Nke-e~kRILmDldvv~~s~dcpyI--------V~c~GyFi~n~dV~IcMelM  173 (391)
T KOG0983|consen  103 GTCGQVWKMRFRSTGHIIAVKQMRRTGNKE-ENKRILMDLDVVLKSHDCPYI--------VQCFGYFITNTDVFICMELM  173 (391)
T ss_pred             CCccceEEEEEcccceEEEEEeecccCCHH-HHHHHHHhhhHHhhccCCCee--------eeeeeEEeeCchHHHHHHHH
Confidence            677899999999999999999999776543 4456777888776665 7888        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      ....+.++..-...+   ++..+-.+.+.+++||.||-++.               .|||||+||+|||+|..|.+|+||
T Consensus       174 s~C~ekLlkrik~pi---PE~ilGk~tva~v~AL~YLKeKH---------------~viHRDvKPSNILlDe~GniKlCD  235 (391)
T KOG0983|consen  174 STCAEKLLKRIKGPI---PERILGKMTVAIVKALYYLKEKH---------------GVIHRDVKPSNILLDERGNIKLCD  235 (391)
T ss_pred             HHHHHHHHHHhcCCc---hHHhhhhhHHHHHHHHHHHHHhc---------------ceeecccCccceEEccCCCEEeec
Confidence            999777655543343   45555677789999999998754               199999999999999999999999


Q ss_pred             cccccccCCCCCCc-cccCccccccccc-----cccCCcceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         172 LGLACDFSKKKPHA-SVESDCILHGYIK-----KLGGPFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       172 FGla~~~~~~~~~~-~~~t~~~~~~~v~-----~~~~~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      ||++-.+.++..++ +.|-+.||+||-.     ..+.-.+|+|+  +....++++..||.+..
T Consensus       236 FGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~  298 (391)
T KOG0983|consen  236 FGISGRLVDSKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCK  298 (391)
T ss_pred             ccccceeecccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCC
Confidence            99998777666554 5678899999963     23345788899  44555577888887754

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.93  E-value=5.5e-25  Score=203.06  Aligned_cols=188  Identities=14%  Similarity=0.051  Sum_probs=137.8

Q ss_pred             CCCceEEEeceeCC-------CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPPSLKP-------LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-------~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      +++.+.||+|.+..       ++..||+|.++...... ....+.+|+++++.+ +|+||        +++++++..++.
T Consensus        28 ~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~e~~~l~~l~~h~~i--------~~~~~~~~~~~~   98 (307)
T cd05098          28 EGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEK-DLSDLISEMEMMKMIGKHKNI--------INLLGACTQDGP   98 (307)
T ss_pred             cCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChH-HHHHHHHHHHHHHHhcCCCCE--------eeEEEEEecCCc
Confidence            56677999987643       34579999998653322 334577799999999 79999        999999999999


Q ss_pred             EEEEEEccCCC-hh-HHhhhhhhh-----------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE
Q psy6542          84 HYIIGVRQSGP-KD-QISRSKINR-----------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH  150 (334)
Q Consensus        84 ~~ivmEy~~g~-l~-~l~~~~~~~-----------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii  150 (334)
                      +|+||||+.++ +. ++.......           -........+.++.|++.||.|||+.+                ++
T Consensus        99 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g----------------i~  162 (307)
T cd05098          99 LYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKK----------------CI  162 (307)
T ss_pred             eEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC----------------cc
Confidence            99999999987 43 443221100           011344556778889999999999999                99


Q ss_pred             eeCCCCCceeeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCC
Q psy6542         151 FRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       151 HrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~  221 (334)
                      ||||||+||+++.++.+||+|||+++......    .....++..|++||+.. . ....+|+|+   ++|+++.++..|
T Consensus       163 H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p  242 (307)
T cd05098         163 HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP  242 (307)
T ss_pred             cccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999998664322    11122346789999743 2 244566666   677777767777


Q ss_pred             CCC
Q psy6542         222 LHP  224 (334)
Q Consensus       222 ~~~  224 (334)
                      |.+
T Consensus       243 ~~~  245 (307)
T cd05098         243 YPG  245 (307)
T ss_pred             CCc
Confidence            643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.93  E-value=8.3e-25  Score=197.12  Aligned_cols=184  Identities=15%  Similarity=0.168  Sum_probs=141.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc----chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH----ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~----~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      ..++...||++.+..+++.||+|+++....    .....+.+.+|++++++++|+|+        +++++++.+++.+++
T Consensus         9 g~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~~   80 (268)
T cd06630           9 GTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHI--------IRMLGATCEDSHFNL   80 (268)
T ss_pred             cCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCce--------ehhhceeccCCeEEE
Confidence            456778999999999999999999986543    12245678889999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      ||||+.|+ +..+.... ..+   .......++.|++.||.|||+++                ++||||||+||+++.++
T Consensus        81 v~e~~~~~~L~~~l~~~-~~~---~~~~~~~~~~ql~~al~~LH~~~----------------i~H~~i~~~nil~~~~~  140 (268)
T cd06630          81 FVEWMAGGSVSHLLSKY-GAF---KEAVIINYTEQLLRGLSYLHENQ----------------IIHRDVKGANLLIDSTG  140 (268)
T ss_pred             EEeccCCCcHHHHHHHh-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEEcCCC
Confidence            99999988 54443322 122   44556677889999999999999                99999999999998776


Q ss_pred             -CEEEEecccccccCCCCC------CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         166 -HVRISDLGLACDFSKKKP------HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       166 -~vkl~DFGla~~~~~~~~------~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                       .++|+|||++........      ....++..|++||+..  .....+|+|+   ++|+++. +..||.
T Consensus       141 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~-g~~p~~  209 (268)
T cd06630         141 QRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMAT-AKPPWN  209 (268)
T ss_pred             CEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHh-CCCCCC
Confidence             589999999986654321      2235677899999742  2244566677   5555554 556664

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.93  E-value=4.5e-25  Score=206.38  Aligned_cols=185  Identities=17%  Similarity=0.096  Sum_probs=138.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecC--CeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEP--NSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~--~~~~ivm   88 (334)
                      +++...||+|.+..+|+.||||.+............+.+|+.+++++ +|+||        +++++++...  ..+|+||
T Consensus        17 ~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni--------~~~~~~~~~~~~~~~~lv~   88 (337)
T cd07852          17 KGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNI--------VKLLNVIKAENDKDIYLVF   88 (337)
T ss_pred             CCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCc--------cceeeeeccCCCceEEEEe
Confidence            46677999999999999999999875433333344566799999999 99999        9999988643  4689999


Q ss_pred             EccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          89 VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        89 Ey~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||+++++.......  .+   .......++.|++.||.|||+.+                |+||||||+||+++.++.+|
T Consensus        89 e~~~~~L~~~~~~~--~~---~~~~~~~i~~qi~~~L~~LH~~~----------------i~H~dl~p~nill~~~~~~k  147 (337)
T cd07852          89 EYMETDLHAVIRAN--IL---EDVHKRYIMYQLLKALKYIHSGN----------------VIHRDLKPSNILLNSDCRVK  147 (337)
T ss_pred             cccccCHHHHHhcC--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEEcCCCcEE
Confidence            99998753332221  22   23344556779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC-------CCccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK-------PHASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~-------~~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||++.......       .....|+..|++||+..  . ....+|+|+   ++|++ .++..||.+.+
T Consensus       148 l~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el-~tg~~pf~~~~  217 (337)
T cd07852         148 LADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEM-LLGKPLFPGTS  217 (337)
T ss_pred             EeeccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHH-HhCCCCCCCCC
Confidence            99999998654332       12245688899999642  2 234566676   45555 45677775544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.93  E-value=5.3e-25  Score=197.91  Aligned_cols=185  Identities=15%  Similarity=0.060  Sum_probs=134.3

Q ss_pred             CCCCceEEEeceeCC---CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee-cCCeEEE
Q psy6542          11 SRVSKWRVKPPSLKP---LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS-EPNSHYI   86 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~---~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~-~~~~~~i   86 (334)
                      .+++...||+|....   .+..||||.+..... ....+.+.+|+.+++.++|||+        +++++++. .++..++
T Consensus         4 g~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~~l   74 (262)
T cd05058           4 GKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITD-LEEVEQFLKEGIIMKDFSHPNV--------LSLLGICLPSEGSPLV   74 (262)
T ss_pred             cccCCceEEEEEEecCCCceEEEEEEecCccCC-HHHHHHHHHHHHHHccCCCCCc--------ceEEEEeecCCCCcEE
Confidence            356777899988653   456799999864332 2234567789999999999999        99999765 4566899


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +|||+.++ +..+.......   ......+.++.|++.||.|||+.+                ++||||||+|||+++++
T Consensus        75 v~e~~~~~~L~~~~~~~~~~---~~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dlk~~nili~~~~  135 (262)
T cd05058          75 VLPYMKHGDLRNFIRSETHN---PTVKDLIGFGLQVAKGMEYLASKK----------------FVHRDLAARNCMLDESF  135 (262)
T ss_pred             EEecCCCCCHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHHhCC----------------ccccccCcceEEEcCCC
Confidence            99999887 44333322111   133445677789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCC------CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKK------PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~------~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      .+||+|||+++......      .....++..|++||... .. ...+|+|+   ++|+++.++.+||.
T Consensus       136 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~  204 (262)
T cd05058         136 TVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  204 (262)
T ss_pred             cEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCC
Confidence            99999999998654321      11223466788999742 23 34566666   67777776776653

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.93  E-value=1.1e-24  Score=196.66  Aligned_cols=182  Identities=13%  Similarity=0.111  Sum_probs=135.9

Q ss_pred             CCCceEEEeceeCC------------CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee
Q psy6542          12 RVSKWRVKPPSLKP------------LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS   79 (334)
Q Consensus        12 ~~~~~~V~~a~~~~------------~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~   79 (334)
                      ++....||++....            ....||+|.+.....  ...+.+.+|+.+++.++||||        +++++++.
T Consensus         5 ~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~--~~~~~~~~~~~~l~~l~hp~i--------v~~~~~~~   74 (262)
T cd05077           5 RGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHR--DISLAFFETASMMRQVSHKHI--------VLLYGVCV   74 (262)
T ss_pred             cCCcceEeeeecccCCCccccccchhhceeEEEeecChhhh--hHHHHHHHHHHHHHhCCCCCE--------eeEEEEEe
Confidence            46677899887432            234589998765432  244567789999999999999        99999999


Q ss_pred             cCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCc
Q psy6542          80 EPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPAN  158 (334)
Q Consensus        80 ~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~N  158 (334)
                      ++...++||||++++ ++.+.......+   .....+.++.||+.||.|||+++                |+||||||+|
T Consensus        75 ~~~~~~lv~e~~~~~~l~~~~~~~~~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------ivH~dlkp~N  135 (262)
T cd05077          75 RDVENIMVEEFVEFGPLDLFMHRKSDVL---TTPWKFKVAKQLASALSYLEDKD----------------LVHGNVCTKN  135 (262)
T ss_pred             cCCCCEEEEecccCCCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHhhhCC----------------eECCCCCccc
Confidence            988999999999988 554433322222   44456778889999999999999                9999999999


Q ss_pred             eeeCCCCC-------EEEEecccccccCCCCCCccccCcccccccccc--ccC-Ccceeeh---hHHHHHcCCCCCCCC
Q psy6542         159 ILLDEHGH-------VRISDLGLACDFSKKKPHASVESDCILHGYIKK--LGG-PFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       159 iLl~~~~~-------vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~--~~~-~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ||++.++.       ++++|||++.......  ...++..|++||...  ..+ ..+|+|+   ++|++++++..|+..
T Consensus       136 ill~~~~~~~~~~~~~~l~d~g~~~~~~~~~--~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~  212 (262)
T cd05077         136 ILLAREGIDGECGPFIKLSDPGIPITVLSRQ--ECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKD  212 (262)
T ss_pred             EEEecCCccCCCCceeEeCCCCCCccccCcc--cccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            99987664       8999999987554332  234677799999753  223 3566666   778887777777644

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.93  E-value=7.8e-25  Score=205.51  Aligned_cols=188  Identities=18%  Similarity=0.067  Sum_probs=135.4

Q ss_pred             CCCceEEEecee-----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeec-CCeE
Q psy6542          12 RVSKWRVKPPSL-----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSE-PNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~-----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~-~~~~   84 (334)
                      +++...||+|.+     ..+++.||||.++...... ....+.+|+.++..+ +||||        +++++++.. ++.+
T Consensus        17 ~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~~h~ni--------v~~~~~~~~~~~~~   87 (343)
T cd05103          17 RGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS-EHRALMSELKILIHIGHHLNV--------VNLLGACTKPGGPL   87 (343)
T ss_pred             CCccceEEEEeeccCCccccceeEEEEEeccCCChH-HHHHHHHHHHHHHhccCCccH--------hhhcceeecCCCce
Confidence            567789999974     4678899999998654322 234677899999999 68999        999988764 4578


Q ss_pred             EEEEEccCCC-hhHHhhhhhhh----------------------------------------------------------
Q psy6542          85 YIIGVRQSGP-KDQISRSKINR----------------------------------------------------------  105 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~----------------------------------------------------------  105 (334)
                      +++||||+|| +..+.......                                                          
T Consensus        88 ~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (343)
T cd05103          88 MVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAE  167 (343)
T ss_pred             EEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhh
Confidence            9999999998 43332221100                                                          


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCC
Q psy6542         106 -----YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSK  180 (334)
Q Consensus       106 -----~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~  180 (334)
                           ...........++.|++.||.|||+++                |+||||||+||+++.++.+||+|||++.....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~----------------i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~  231 (343)
T cd05103         168 QEDLYKKVLTLEDLICYSFQVAKGMEFLASRK----------------CIHRDLAARNILLSENNVVKICDFGLARDIYK  231 (343)
T ss_pred             hhhhhhccCCHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCccCeEEEcCCCcEEEEeccccccccc
Confidence                 001234455677889999999999999                99999999999999999999999999986543


Q ss_pred             CCCC----ccccCccccccccc-ccc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         181 KKPH----ASVESDCILHGYIK-KLG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       181 ~~~~----~~~~t~~~~~~~v~-~~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ....    ...++..|++||+. ... ...+|+|+   ++|+++..+..||..
T Consensus       232 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~  284 (343)
T cd05103         232 DPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG  284 (343)
T ss_pred             CcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            3221    12235668999974 233 44566666   667777666666543

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.93  E-value=6.2e-25  Score=199.68  Aligned_cols=167  Identities=14%  Similarity=0.094  Sum_probs=125.1

Q ss_pred             CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhh
Q psy6542          28 FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRY  106 (334)
Q Consensus        28 ~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~  106 (334)
                      ..||+|++.....  .....+.+|+++++.++||||        +++++++.+++..|+||||++|+ ++.+.......+
T Consensus        45 ~~v~~k~~~~~~~--~~~~~~~~~~~~~~~l~h~ni--------v~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~  114 (274)
T cd05076          45 LRVVLKVLDPSHR--DIALAFFETASLMSQVSHIHL--------AFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRV  114 (274)
T ss_pred             eeEEEEecChHHH--HHHHHHHHHHHHHhcCCCCCe--------eeEEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCC
Confidence            4689998864332  234567789999999999999        99999999999999999999999 555544322223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-------CEEEEecccccccC
Q psy6542         107 HKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-------HVRISDLGLACDFS  179 (334)
Q Consensus       107 ~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-------~vkl~DFGla~~~~  179 (334)
                         .....+.++.|++.||.|||+++                |+||||||+|||+++.+       .+|++|||++....
T Consensus       115 ---~~~~~~~i~~qi~~~l~~lH~~~----------------iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~  175 (274)
T cd05076         115 ---PVAWKITVAQQLASALSYLEDKN----------------LVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTAL  175 (274)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHcCC----------------ccCCCCCcccEEEeccCcccCccceeeecCCccccccc
Confidence               34455677889999999999999                99999999999997653       38999999986543


Q ss_pred             CCCCCccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         180 KKKPHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       180 ~~~~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ...  ...++..|++||....   ..+.+|+|+   ++|++++++..||...
T Consensus       176 ~~~--~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  225 (274)
T cd05076         176 SRE--ERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKER  225 (274)
T ss_pred             ccc--ccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCcccc
Confidence            322  2245667889996432   245667777   6778777777776543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.93  E-value=1.3e-24  Score=195.22  Aligned_cols=185  Identities=18%  Similarity=0.204  Sum_probs=145.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||++.+..+++.||+|.++.........+.+.+|+++++.++|+||        +++++++...+.+++|+||+
T Consensus        10 ~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i--------~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06626          10 GGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNL--------VKYYGVEVHREKVYIFMEYC   81 (264)
T ss_pred             cCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCCh--------hheeeeEecCCEEEEEEecC
Confidence            4677899999999999999999998776654456678899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +++ +..+.... ...   .......++.|++.||.|||+.+                ++|+||+|+||++++++.+||+
T Consensus        82 ~~~~L~~~~~~~-~~~---~~~~~~~i~~~i~~~l~~lh~~~----------------i~H~dl~~~nil~~~~~~~kl~  141 (264)
T cd06626          82 SGGTLEELLEHG-RIL---DEHVIRVYTLQLLEGLAYLHSHG----------------IVHRDIKPANIFLDHNGVIKLG  141 (264)
T ss_pred             CCCcHHHHHhhc-CCC---ChHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEECCCCCEEEc
Confidence            988 44333322 112   34455667789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCC------ccccCccccccccccc-----cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPH------ASVESDCILHGYIKKL-----GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~~------~~~~t~~~~~~~v~~~-----~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++.........      ...++..|++||+...     ....+|+|+   ++|+++. +..||...
T Consensus       142 d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~-g~~pf~~~  209 (264)
T cd06626         142 DFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMAT-GKRPWSEL  209 (264)
T ss_pred             ccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHh-CCCCccCC
Confidence            99999876544321      2346788999997432     234566666   5566654 56676543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.93  E-value=1.1e-24  Score=198.49  Aligned_cols=185  Identities=13%  Similarity=0.021  Sum_probs=135.3

Q ss_pred             CCCceEEEeceeCCCCCc----EEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFP----IQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~----vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++...||+|....+|..    ||+|.+..... ......+..|+.+++.++||||        +++++++. +...+++
T Consensus        17 ~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~l~~l~h~~i--------v~~~~~~~-~~~~~~i   86 (279)
T cd05111          17 SGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSG-RQTFQEITDHMLAMGSLDHAYI--------VRLLGICP-GASLQLV   86 (279)
T ss_pred             ccCCcceEEEEEcCCCCceeeEEEEeecccccc-hHHHHHHHHHHHHHhcCCCCCc--------ceEEEEEC-CCccEEE
Confidence            577779999999888875    66666643222 2233466778889999999999        99999875 4557889


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.++ +..........+   .......++.|++.||.|||+++                ++||||||+|||++.++.
T Consensus        87 ~e~~~~gsL~~~l~~~~~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------iiH~dlkp~nili~~~~~  147 (279)
T cd05111          87 TQLSPLGSLLDHVRQHRDSL---DPQRLLNWCVQIAKGMYYLEEHR----------------MVHRNLAARNILLKSDSI  147 (279)
T ss_pred             EEeCCCCcHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeccccCcceEEEcCCCc
Confidence            9999887 433322222222   44566778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC----CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKP----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +||+|||+++.......    ....++..|++||...  ..+..+|+|+   ++|+++..+..||.+.
T Consensus       148 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~  215 (279)
T cd05111         148 VQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGM  215 (279)
T ss_pred             EEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999986643321    1233466788999753  2344667777   6777776677776544

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.93  E-value=8.4e-25  Score=196.79  Aligned_cols=183  Identities=15%  Similarity=0.060  Sum_probs=134.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..++ .||+|.+.....   ..+.+.+|+++++.++|+|+        +++++++. .+..|++|||+
T Consensus        16 ~g~~~~v~~~~~~~~~-~~~lK~~~~~~~---~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05069          16 QGCFGEVWMGTWNGTT-KVAIKTLKPGTM---MPEAFLQEAQIMKKLRHDKL--------VPLYAVVS-EEPIYIVTEFM   82 (260)
T ss_pred             CcCCCeEEEEEEcCCc-eEEEEEcccCCc---cHHHHHHHHHHHHhCCCCCe--------eeEEEEEc-CCCcEEEEEcC
Confidence            3566689999887654 599999875443   23457789999999999999        99998875 45689999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .++ +..+......  ........+.++.|++.||.|||+.+                ++||||||+||++++++.++|+
T Consensus        83 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~~l~~al~~lH~~~----------------i~H~dl~~~Nill~~~~~~~l~  144 (260)
T cd05069          83 GKGSLLDFLKEGDG--KYLKLPQLVDMAAQIADGMAYIERMN----------------YIHRDLRAANILVGDNLVCKIA  144 (260)
T ss_pred             CCCCHHHHHhhCCC--CCCCHHHHHHHHHHHHHHHHHHHhCC----------------EeecccCcceEEEcCCCeEEEC
Confidence            987 4333222111  11244555677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCC---ccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPH---ASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~~---~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||+++........   ...++..|++||...  .....+|+|+   ++|++++.+.+||.+.
T Consensus       145 dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  207 (260)
T cd05069         145 DFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM  207 (260)
T ss_pred             CCccceEccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999866443221   223456688899743  2244566677   6777777677787543

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.93  E-value=1e-24  Score=199.08  Aligned_cols=187  Identities=14%  Similarity=0.131  Sum_probs=141.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++.+.||++.+..+|+.||||.+...... .....+.+|+.++.++. |+||        +++++++..++..+++|||
T Consensus        14 ~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~e~~~l~~~~~~~~i--------v~~~~~~~~~~~~~~~~e~   84 (288)
T cd06616          14 RGAFGTVNKMLHKPSGTIMAVKRIRSTVDE-KEQKRLLMDLDVVMRSSDCPYI--------VKFYGALFREGDCWICMEL   84 (288)
T ss_pred             CCCceEEEEEEECCCCCEEEEEEehhccCh-HHHHHHHHHHHHHHHhcCCCCE--------eeeeeEEecCCcEEEEEec
Confidence            577789999999999999999999865543 23456788999999996 9999        9999999999999999999


Q ss_pred             cCCChhHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGPKDQISRSK-INRYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~l~~l~~~~-~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      +.+++..+.... ...........+..++.|++.||.|||+. +                ++||||||+||++++++.++
T Consensus        85 ~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~----------------i~H~dlkp~Nil~~~~~~~k  148 (288)
T cd06616          85 MDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELK----------------IIHRDVKPSNILLDRNGNIK  148 (288)
T ss_pred             ccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC----------------eeccCCCHHHEEEccCCcEE
Confidence            988743322211 00111224555667788999999999975 7                99999999999999999999


Q ss_pred             EEecccccccCCCCC-CccccCccccccccccc-----cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP-HASVESDCILHGYIKKL-----GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       169 l~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~-----~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |+|||+++....... ....++..|++||+...     ..+.+|+|+   ++|+++ .+.+||..
T Consensus       149 l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~-~g~~p~~~  212 (288)
T cd06616         149 LCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVA-TGKFPYPK  212 (288)
T ss_pred             EeecchhHHhccCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHH-hCCCCchh
Confidence            999999986544332 33457788999998432     244566676   556655 46667643

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.2e-24  Score=199.70  Aligned_cols=189  Identities=15%  Similarity=0.081  Sum_probs=137.8

Q ss_pred             CCCCceEEEeceeCCCC--------------CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEE
Q psy6542          11 SRVSKWRVKPPSLKPLG--------------FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYK   76 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~--------------~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~   76 (334)
                      .+++...||+|.+..++              ..||||.++.... ......+.+|++++++++|+|+        +++++
T Consensus        14 g~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~ei~~l~~l~h~~i--------~~~~~   84 (295)
T cd05097          14 GEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVT-KTARNDFLKEIKIMSRLKNPNI--------IRLLG   84 (295)
T ss_pred             CCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCC-HHHHHHHHHHHHHHHhCCCCCc--------CeEEE
Confidence            46777899999876543              3489999986543 2344568889999999999999        99999


Q ss_pred             EeecCCeEEEEEEccCCC-hhHHhhh-hhh-------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCC
Q psy6542          77 VTSEPNSHYIIGVRQSGP-KDQISRS-KIN-------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVP  147 (334)
Q Consensus        77 ~~~~~~~~~ivmEy~~g~-l~~l~~~-~~~-------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~  147 (334)
                      ++..++..|+||||+.|+ +..+... ...       ..........+.++.|++.||.|||+.+               
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---------------  149 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLN---------------  149 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcC---------------
Confidence            999999999999999988 4333221 110       0012245566778889999999999999               


Q ss_pred             cEEeeCCCCCceeeCCCCCEEEEecccccccCCCCCC----ccccCcccccccccc--ccCCcceeeh---hHHHHHcC-
Q psy6542         148 CLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPH----ASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFP-  217 (334)
Q Consensus       148 ~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~~----~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~-  217 (334)
                       ++||||||+||++++++.+||+|||++.........    ...++..|++||+..  ..+..+|+|+   ++|+++.. 
T Consensus       150 -i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~  228 (295)
T cd05097         150 -FVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLC  228 (295)
T ss_pred             -eeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcC
Confidence             999999999999999999999999999865433221    122356788998743  2345666676   56666642 


Q ss_pred             CCCCCCC
Q psy6542         218 NRLELHP  224 (334)
Q Consensus       218 ~~~~~~~  224 (334)
                      +..||..
T Consensus       229 ~~~p~~~  235 (295)
T cd05097         229 KEQPYSL  235 (295)
T ss_pred             CCCCCcc
Confidence            3445433

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.93  E-value=8.6e-25  Score=196.26  Aligned_cols=185  Identities=16%  Similarity=0.152  Sum_probs=145.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.+..+|+.||||.+...... ...+.+.+|+++++.++|+|+        +++++++..++.+|+||||+
T Consensus        11 ~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06623          11 QGSSGVVYKVRHKPTGKIYALKKIHVDGDE-EFRKQLLRELKTLRSCESPYV--------VKCYGAFYKEGEISIVLEYM   81 (264)
T ss_pred             ecCCeEEEEEEEcCCCcEEEEEEeccCcch-HHHHHHHHHHHHHHhcCCCCe--------eeEEEEEccCCeEEEEEEec
Confidence            456779999999999999999999866543 345678889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|+ +..+....    ........+.++.|++.||.|||+ .+                ++||||+|+||++++++.++|
T Consensus        82 ~~~~L~~~l~~~----~~l~~~~~~~~~~~l~~~l~~lh~~~~----------------~~H~~l~~~ni~~~~~~~~~l  141 (264)
T cd06623          82 DGGSLADLLKKV----GKIPEPVLAYIARQILKGLDYLHTKRH----------------IIHRDIKPSNLLINSKGEVKI  141 (264)
T ss_pred             CCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHhccCC----------------CccCCCCHHHEEECCCCCEEE
Confidence            977 54433322    222555666778899999999999 99                999999999999999999999


Q ss_pred             EecccccccCCCCCC--ccccCcccccccccccc--CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPH--ASVESDCILHGYIKKLG--GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~~--~~~~t~~~~~~~v~~~~--~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++.........  ...++..|++||.....  +..+|.|+   ++|++++ +..||....
T Consensus       142 ~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~t-g~~p~~~~~  204 (264)
T cd06623         142 ADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECAL-GKFPFLPPG  204 (264)
T ss_pred             ccCccceecccCCCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHh-CCCCCcccc
Confidence            999999877554433  34567889999974322  34566666   5566654 566664443

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=1.2e-24  Score=196.33  Aligned_cols=185  Identities=12%  Similarity=0.120  Sum_probs=138.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCC------eE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPN------SH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~------~~   84 (334)
                      .++.+.||+|.++.+++.||+|++.....   ....+.+|+++++.+ +|+||        +++++++....      .+
T Consensus        16 ~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~e~~~l~~~~~h~~i--------~~~~~~~~~~~~~~~~~~~   84 (275)
T cd06608          16 EGTYGKVYKARHKKTGQLVAIKIMDIIED---EEEEIKEEYNILRKYSNHPNI--------ATFYGAFIKKNPPGNDDQL   84 (275)
T ss_pred             CCCCeEEEEEEECCCCcEEEEEEEecCch---hHHHHHHHHHHHHHhcCCCCh--------heEEEEEEecCCCCcceEE
Confidence            45667899999999999999999886543   234677899999998 69999        99999997544      48


Q ss_pred             EEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          85 YIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      |+||||++++ +..+...............+..++.|++.||.|||+.+                ++|+||+|+||+++.
T Consensus        85 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~----------------i~H~~l~p~ni~~~~  148 (275)
T cd06608          85 WLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENK----------------VIHRDIKGQNILLTK  148 (275)
T ss_pred             EEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCC----------------cccCCCCHHHEEEcc
Confidence            9999999987 43332321101112245556677789999999999999                999999999999999


Q ss_pred             CCCEEEEecccccccCCCC--CCccccCccccccccccc-------cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         164 HGHVRISDLGLACDFSKKK--PHASVESDCILHGYIKKL-------GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~-------~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ++.++|+|||++.......  .....++..|++||+...       ....+|+|+   ++|++ .++.+||..
T Consensus       149 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l-~~g~~p~~~  220 (275)
T cd06608         149 NAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIEL-ADGKPPLCD  220 (275)
T ss_pred             CCeEEECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHH-HhCCCCccc
Confidence            9999999999997654332  234557888999997421       133567777   44555 556777643

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.93  E-value=1e-24  Score=195.17  Aligned_cols=183  Identities=16%  Similarity=0.093  Sum_probs=142.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++.++||+|.+..++..||||.+.....   .....+.+.+|+++++.++|+|+        +++++++.+++.+|++|
T Consensus        10 ~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i--------~~~~~~~~~~~~~~lv~   81 (258)
T cd06632          10 SGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNI--------VQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCc--------hheeeeEecCCeEEEEE
Confidence            56778999999999999999999976543   23345678889999999999999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||++|+ ++.+....    ..........++.|++.||.|||+.+                ++|+||+|+||+++.++.+
T Consensus        82 e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dl~~~ni~~~~~~~~  141 (258)
T cd06632          82 ELVPGGSLAKLLKKY----GSFPEPVIRLYTRQILLGLEYLHDRN----------------TVHRDIKGANILVDTNGVV  141 (258)
T ss_pred             EecCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEECCCCCE
Confidence            999987 44332221    12244555667789999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCC-CCccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         168 RISDLGLACDFSKKK-PHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       168 kl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      ||+|||++....... .....++..|++||....   ....+|.|+   ++|+++. +..||.
T Consensus       142 kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~-g~~pf~  203 (258)
T cd06632         142 KLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMAT-GKPPWS  203 (258)
T ss_pred             EEccCccceeccccccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHh-CCCCcc
Confidence            999999998665443 334557888999997432   234566666   5555554 555653

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.93  E-value=1.1e-24  Score=196.27  Aligned_cols=183  Identities=15%  Similarity=0.137  Sum_probs=139.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc----chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH----ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~----~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .++.+.||+|.. .+|+.+|||.++....    .......+.+|+++++.++|+||        +++++++.+++.+|++
T Consensus        10 ~g~~~~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~lv   80 (265)
T cd06631          10 KGAYGTVYCGLT-NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNI--------VQYLGTCLDDNTISIF   80 (265)
T ss_pred             ccCCeEEEEEEE-cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCE--------eeEeeEeecCCeEEEE
Confidence            466779999976 4789999999986543    22233568889999999999999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||++|+ ++.+.... ..+   ....+..++.|++.||.|||+.+                ++|+||+|+||++++++.
T Consensus        81 ~e~~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dl~p~nil~~~~~~  140 (265)
T cd06631          81 MEFVPGGSISSILNRF-GPL---PEPVFCKYTKQILDGVAYLHNNC----------------VVHRDIKGNNVMLMPNGI  140 (265)
T ss_pred             EecCCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCcCHHhEEECCCCe
Confidence            9999988 54443322 122   44555567789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCC--------CCCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKK--------KPHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       167 vkl~DFGla~~~~~~--------~~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ++|+|||++......        ......|+..|++||+... . ...+|+|+   ++|++ ..+.+||..
T Consensus       141 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l-~~g~~p~~~  210 (265)
T cd06631         141 IKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEM-ATGKPPLAS  210 (265)
T ss_pred             EEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHH-HhCCCcccc
Confidence            999999999865321        1123457888999998532 2 45666777   45555 556667644

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.93  E-value=1.5e-25  Score=210.22  Aligned_cols=183  Identities=19%  Similarity=0.149  Sum_probs=139.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC------CeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP------NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~------~~~~   85 (334)
                      .++.+.||+|.++.+|+.||||.+............+.+|+++++.++||||        +++++++...      ..+|
T Consensus        25 ~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni--------v~~~~~~~~~~~~~~~~~~~   96 (342)
T cd07879          25 SGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENV--------IGLLDVFTSAVSGDEFQDFY   96 (342)
T ss_pred             ecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCc--------cchhheecccccCCCCceEE
Confidence            3677899999999999999999998654433345567889999999999999        9999988754      3469


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||||+.+.+..+...   .+   ....+..++.|++.||.|||+.+                ++||||||+||+++.++
T Consensus        97 lv~e~~~~~l~~~~~~---~~---~~~~~~~~~~qi~~aL~~LH~~~----------------i~H~dlkp~NIll~~~~  154 (342)
T cd07879          97 LVMPYMQTDLQKIMGH---PL---SEDKVQYLVYQMLCGLKYIHSAG----------------IIHRDLKPGNLAVNEDC  154 (342)
T ss_pred             EEecccccCHHHHHcC---CC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEECCCC
Confidence            9999998765333211   22   34445567789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++..... .....++..|++||+...   ....+|+|+   ++|+++ .+..||.+.+
T Consensus       155 ~~kL~dfg~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~-~g~~pf~~~~  219 (342)
T cd07879         155 ELKILDFGLARHADAE-MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEML-TGKTLFKGKD  219 (342)
T ss_pred             CEEEeeCCCCcCCCCC-CCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHH-hCCCCCCCCC
Confidence            9999999999865433 233456788999997432   244566666   555554 5677887654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.93  E-value=1.3e-24  Score=196.45  Aligned_cols=239  Identities=11%  Similarity=0.031  Sum_probs=164.5

Q ss_pred             CCCCceEEEeceeCCC---CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          11 SRVSKWRVKPPSLKPL---GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~---~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .+++.+.||+|.+..+   ...||||....... ....+.+.+|+.+++.++||||        +++++++.+ +..|+|
T Consensus        15 g~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~-~~~~~~~~~e~~~l~~~~h~~i--------~~~~~~~~~-~~~~lv   84 (270)
T cd05056          15 GEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS-PSVREKFLQEAYIMRQFDHPHI--------VKLIGVITE-NPVWIV   84 (270)
T ss_pred             CCccceeEEEEEEecCCCCCcceEEEecCCcCC-HHHHHHHHHHHHHHHhCCCCch--------hceeEEEcC-CCcEEE
Confidence            3577789999987654   45789998875543 2344578889999999999999        999998865 557899


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.++ +..+.......   ......+.++.|++.||.|||+.+                ++||||||+||+++.++.
T Consensus        85 ~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~lH~~~----------------~~H~dl~p~nili~~~~~  145 (270)
T cd05056          85 MELAPLGELRSYLQVNKYS---LDLASLILYSYQLSTALAYLESKR----------------FVHRDIAARNVLVSSPDC  145 (270)
T ss_pred             EEcCCCCcHHHHHHhCCCC---CCHHHHHHHHHHHHHHHHHHHhCC----------------eeccccChheEEEecCCC
Confidence            9999887 44333322112   245556677789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCCC---ccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         167 VRISDLGLACDFSKKKPH---ASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~---~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      ++|+|||+++........   ...++..|++||... . ....+|+|+   ++|+++..+..||.+.+......      
T Consensus       146 ~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~------  219 (270)
T cd05056         146 VKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIG------  219 (270)
T ss_pred             eEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHH------
Confidence            999999999866444221   122345688999742 2 244677777   66777766777775443110000      


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                                         .+.+..  +.    +..+..++.+.+  +..++...+|..|+ +.++++++....
T Consensus       220 -------------------~~~~~~--~~----~~~~~~~~~~~~--li~~~l~~~P~~Rpt~~~~~~~l~~~~  266 (270)
T cd05056         220 -------------------RIENGE--RL----PMPPNCPPTLYS--LMTKCWAYDPSKRPRFTELKAQLSDIL  266 (270)
T ss_pred             -------------------HHHcCC--cC----CCCCCCCHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                               000000  00    111233444445  77788888888888 888888877643

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.93  E-value=5e-25  Score=200.38  Aligned_cols=188  Identities=19%  Similarity=0.139  Sum_probs=141.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc---CCCCcccccccceeeEEEEeecCCe----
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL---RNEPFKKCVLLFKMNLYKVTSEPNS----   83 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l---~h~~i~~~~~~~~v~~~~~~~~~~~----   83 (334)
                      ..++...||++.++.+++.||||.++...........+.+|+.+++++   +|+|+        +++++++...+.    
T Consensus         8 ~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i--------~~~~~~~~~~~~~~~~   79 (287)
T cd07838           8 GEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNI--------VRLLDVCHGPRTDREL   79 (287)
T ss_pred             cccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCc--------ceEEEEEeeccCCCCc
Confidence            356677999999999999999999986655433445566788887766   59999        999999987766    


Q ss_pred             -EEEEEEccCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          84 -HYIIGVRQSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        84 -~~ivmEy~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                       ++++|||+.+.+ +++.......+   .....+.++.|++.||.|||+.+                ++|+||+|+||++
T Consensus        80 ~~~l~~e~~~~~l~~~l~~~~~~~l---~~~~~~~~~~~i~~al~~LH~~~----------------i~h~~l~~~nili  140 (287)
T cd07838          80 KLTLVFEHVDQDLATYLSKCPKPGL---PPETIKDLMRQLLRGVDFLHSHR----------------IVHRDLKPQNILV  140 (287)
T ss_pred             eeEEEehhcccCHHHHHHHccCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeeccCChhhEEE
Confidence             999999999874 33322221122   45566777889999999999999                9999999999999


Q ss_pred             CCCCCEEEEecccccccCCCCC-CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         162 DEHGHVRISDLGLACDFSKKKP-HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       162 ~~~~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.++.++|+|||++........ ....++..|++||+..  .....+|.|+   ++|+++ ++.+||.+.+
T Consensus       141 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~-~~~~~~~~~~  210 (287)
T cd07838         141 TSDGQVKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELF-RRRPLFRGTS  210 (287)
T ss_pred             ccCCCEEEeccCcceeccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHH-hCCCcccCCC
Confidence            9999999999999987654432 2334677889999743  2244566666   555554 5577776554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.93  E-value=1.1e-24  Score=198.34  Aligned_cols=187  Identities=11%  Similarity=0.030  Sum_probs=138.7

Q ss_pred             CCCceEEEecee-----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSL-----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~-----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++...||++..     ..++..+|+|.+.....  .....+.+|+++++.++|+||        +++++++.+++..|+
T Consensus        15 ~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~l   84 (280)
T cd05092          15 EGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE--SARQDFQREAELLTVLQHQHI--------VRFYGVCTEGRPLLM   84 (280)
T ss_pred             CccCCeEEEeEEecCCCCCCceEEEEEecCcCCH--HHHHHHHHHHHHHhcCCCCCC--------ceEEEEEecCCceEE
Confidence            366778998864     34677899998875432  344578889999999999999        999999999999999


Q ss_pred             EEEccCCC-hh-HHhhhhhh----------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCC
Q psy6542          87 IGVRQSGP-KD-QISRSKIN----------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDL  154 (334)
Q Consensus        87 vmEy~~g~-l~-~l~~~~~~----------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDl  154 (334)
                      +|||+.++ +. ++......          ..........+.++.|++.||.|||+++                ++||||
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~----------------i~H~dl  148 (280)
T cd05092          85 VFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLH----------------FVHRDL  148 (280)
T ss_pred             EEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCC----------------eecccc
Confidence            99999887 43 33222100          0011245566778889999999999999                999999


Q ss_pred             CCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         155 KPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       155 Kp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ||+||++++++.+||+|||+++.......    ....++..|++||+.. .. ...+|+|+   ++|+++..+.+||..
T Consensus       149 kp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~  227 (280)
T cd05092         149 ATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQ  227 (280)
T ss_pred             cHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCcc
Confidence            99999999999999999999986543321    1223356789999743 22 44567777   667777667777644

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.93  E-value=3e-24  Score=195.54  Aligned_cols=179  Identities=14%  Similarity=0.072  Sum_probs=131.4

Q ss_pred             CCCCceEEEece----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--CCeE
Q psy6542          11 SRVSKWRVKPPS----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--PNSH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--~~~~   84 (334)
                      .+++...||++.    +..++..||||.+.....  ...+.+.+|+++++.++||||        +++++++..  ...+
T Consensus        13 g~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~~   82 (284)
T cd05081          13 GKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTA--EHLRDFEREIEILKSLQHDNI--------VKYKGVCYSAGRRNL   82 (284)
T ss_pred             cCCCCceEEEEEecCCcCCCCcEEEEEEeccCCH--HHHHHHHHHHHHHHhCCCCCe--------eEEEEEEccCCCCce
Confidence            345667899887    456899999999875432  234567889999999999999        999988653  3568


Q ss_pred             EEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          85 YIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      ++||||++|+ +..+.......   ......+.++.|++.||.|||+++                ++||||||+||++++
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~---l~~~~~~~~~~~l~~aL~~LH~~~----------------i~H~dlkp~nili~~  143 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQKHRER---LDHRKLLLYASQICKGMEYLGSKR----------------YVHRDLATRNILVES  143 (284)
T ss_pred             EEEEEecCCCCHHHHHHhcCcC---CCHHHHHHHHHHHHHHHHHHHHCC----------------ceeccCCHhhEEECC
Confidence            9999999887 54332221112   245556677789999999999999                999999999999999


Q ss_pred             CCCEEEEecccccccCCCCCC-----ccccCcccccccccc--ccCCcceeeh---hHHHHHcCC
Q psy6542         164 HGHVRISDLGLACDFSKKKPH-----ASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPN  218 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~~~-----~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~  218 (334)
                      ++.+||+|||+++........     ...++..|++||+..  ..+..+|+|+   ++|+++.+.
T Consensus       144 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~  208 (284)
T cd05081         144 ENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYS  208 (284)
T ss_pred             CCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcC
Confidence            999999999999876543321     112234578888743  2244566666   667776543

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.93  E-value=1.2e-25  Score=209.45  Aligned_cols=187  Identities=20%  Similarity=0.198  Sum_probs=146.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC-----eEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN-----SHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~-----~~~i   86 (334)
                      +++...||+|.+..+|+.||||.+.....+....+.+.+|+++++.++|+||        +++++++...+     .+|+
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~~~~~l   81 (330)
T cd07834          10 SGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENI--------IGLLDILRPPSPEDFNDVYI   81 (330)
T ss_pred             CCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcch--------hhhhhhhcccCcccccceEE
Confidence            4667799999999999999999998765444556678889999999999999        99999988765     7899


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      +|||+++++..+....    .......++.++.|++.||.|||+.+                ++||||||+||+++.++.
T Consensus        82 v~e~~~~~l~~~l~~~----~~l~~~~~~~i~~~l~~~l~~LH~~g----------------i~H~dlkp~nili~~~~~  141 (330)
T cd07834          82 VTELMETDLHKVIKSP----QPLTDDHIQYFLYQILRGLKYLHSAN----------------VIHRDLKPSNILVNSNCD  141 (330)
T ss_pred             EecchhhhHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEEcCCCC
Confidence            9999998753332222    12245556677889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC-----CCccccCcccccccccc---ccCCcceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK-----PHASVESDCILHGYIKK---LGGPFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~---~~~~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      ++|+|||++.......     .....++..|++||+..   .....+|+|+  ++...++++.+||.+.+
T Consensus       142 ~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~  211 (330)
T cd07834         142 LKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRD  211 (330)
T ss_pred             EEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCC
Confidence            9999999998765543     23345678899999842   2344567777  44444566777887665

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG1095|consensus

Probab=99.93  E-value=6.4e-25  Score=223.19  Aligned_cols=232  Identities=14%  Similarity=0.071  Sum_probs=174.0

Q ss_pred             CCCceEEEeceeCCCCCc-----EEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFP-----IQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~-----vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      ++-++.||.|........     ||||.+++..... ....|.+|..+|++++||||        |++.+++.+....+|
T Consensus       702 ~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~-~~~~Fl~Ea~~m~~f~HpNi--------v~liGv~l~~~~~~i  772 (1025)
T KOG1095|consen  702 KGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQ-EVSDFLKEALLMSKFDHPNI--------VSLIGVCLDSGPPLI  772 (1025)
T ss_pred             cccccceEEEEEecCCCCccceEEEEEeccccCCHH-HHHHHHHHHHHHhcCCCcce--------eeEEEeecCCCCcEE
Confidence            466789999988755544     8999998766543 44578889999999999999        999999999999999


Q ss_pred             EEEccCCC--hhHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          87 IGVRQSGP--KDQISRSKINR--YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        87 vmEy~~g~--l~~l~~~~~~~--~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      ++|||.||  +.++...+...  .+.+....++.++.||+.|+.||++++                +|||||...|+|++
T Consensus       773 ~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~----------------fvHRDLAaRNCLL~  836 (1025)
T KOG1095|consen  773 LLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKH----------------FVHRDLAARNCLLD  836 (1025)
T ss_pred             EehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCC----------------CcCcchhhhheeec
Confidence            99999999  45554443222  234467778899999999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCCCCCcccc----Ccccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccc
Q psy6542         163 EHGHVRISDLGLACDFSKKKPHASVE----SDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPEL  233 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~~~~~~~----t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~  233 (334)
                      .+..|||+|||+|+.+.........+    ...+||||...  ..++++|+|+   ++||.+.-+..||...+..   ++
T Consensus       837 ~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~---~v  913 (1025)
T KOG1095|consen  837 ERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNF---EV  913 (1025)
T ss_pred             ccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchH---HH
Confidence            99999999999999554443322222    36789999854  3367888888   9999999999997655521   11


Q ss_pred             hhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch
Q psy6542         234 IFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC  299 (334)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~  299 (334)
                      +                     ...+ +      +..+++.+.+|..+..+|..||...+..+...
T Consensus       914 ~---------------------~~~~-~------ggRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F  951 (1025)
T KOG1095|consen  914 L---------------------LDVL-E------GGRLDPPSYCPEKLYQLMLQCWKHDPEDRPSF  951 (1025)
T ss_pred             H---------------------HHHH-h------CCccCCCCCCChHHHHHHHHHccCChhhCccH
Confidence            1                     1111 1      11333457778888998888887765444433

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.93  E-value=1e-24  Score=196.66  Aligned_cols=183  Identities=15%  Similarity=0.077  Sum_probs=135.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.+..++ .||||.++.....   .+.+.+|+++++.++|+||        +++++++. .+..|+||||+
T Consensus        16 ~g~~~~v~~~~~~~~~-~valK~~~~~~~~---~~~~~~E~~~l~~l~~~~i--------~~~~~~~~-~~~~~lv~e~~   82 (262)
T cd05071          16 QGCFGEVWMGTWNGTT-RVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEKL--------VQLYAVVS-EEPIYIVTEYM   82 (262)
T ss_pred             CCCCCcEEEEEecCCc-eEEEEecccCccC---HHHHHHHHHHHHhCCCCCc--------ceEEEEEC-CCCcEEEEEcC
Confidence            3566689999887654 5999999864432   2457789999999999999        99998875 45679999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .++ +..+......  ........+.++.|++.||.|||+.+                ++||||||+||++++++.++|+
T Consensus        83 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~~l~~aL~~lH~~~----------------i~H~dl~p~Nill~~~~~~~L~  144 (262)
T cd05071          83 SKGSLLDFLKGEMG--KYLRLPQLVDMAAQIASGMAYVERMN----------------YVHRDLRAANILVGENLVCKVA  144 (262)
T ss_pred             CCCcHHHHHhhccc--cCCCHHHHHHHHHHHHHHHHHHHHCC----------------ccccccCcccEEEcCCCcEEec
Confidence            987 4333222111  11244556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCC---ccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPH---ASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~~---~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||+++........   ...++..|++||+.. .. ...+|+|+   ++|++++++.+||.+.
T Consensus       145 dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~  207 (262)
T cd05071         145 DFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM  207 (262)
T ss_pred             cCCceeeccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999866544321   223456789999743 22 44566666   6777777677776543

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.93  E-value=1.9e-24  Score=195.18  Aligned_cols=184  Identities=17%  Similarity=0.169  Sum_probs=137.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--CCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--PNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--~~~~~i   86 (334)
                      .++.+.||+|.+..+|..||+|.+.....   .....+.+.+|+.+++.++||||        +++++++.+  ++.+++
T Consensus        12 ~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~l   83 (266)
T cd06651          12 QGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERI--------VQYYGCLRDRAEKTLTI   83 (266)
T ss_pred             CCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCe--------eeEEEEEEcCCCCEEEE
Confidence            35677999999999999999999876543   22334567889999999999999        999998875  467899


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +|||++++ +....... ..+   .....+.++.|++.||.|||+.+                ++||||||+||++++++
T Consensus        84 ~~e~~~~~~L~~~l~~~-~~l---~~~~~~~~~~qi~~~l~~LH~~~----------------i~H~~l~p~nil~~~~~  143 (266)
T cd06651          84 FMEYMPGGSVKDQLKAY-GAL---TESVTRKYTRQILEGMSYLHSNM----------------IVHRDIKGANILRDSAG  143 (266)
T ss_pred             EEeCCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeeCCCCHHHEEECCCC
Confidence            99999887 43332221 122   34445567789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCC-----CCccccCcccccccccccc--CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKK-----PHASVESDCILHGYIKKLG--GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~~~--~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .++|+|||+++......     .....++..|++||.....  +..+|+|+   ++|+++. +..||..
T Consensus       144 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~-g~~pf~~  211 (266)
T cd06651         144 NVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLT-EKPPWAE  211 (266)
T ss_pred             CEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHH-CCCCccc
Confidence            99999999998653321     1224467889999974322  34566676   5566554 5666643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.93  E-value=3e-24  Score=195.05  Aligned_cols=182  Identities=16%  Similarity=0.110  Sum_probs=140.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||++.+..+++.||||.+...... ...+.+.+|+.+++.++||||        +++++++..++.+|+||||+
T Consensus        14 ~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06641          14 KGSFGEVFKGIDNRTQKVVAIKIIDLEEAE-DEIEDIQQEITVLSQCDSPYV--------TKYYGSYLKDTKLWIIMEYL   84 (277)
T ss_pred             ecCCeEEEEEEECCCCcEEEEEEeccccch-HHHHHHHHHHHHHHhcCCCCE--------eEEEEEEEeCCeEEEEEEeC
Confidence            467789999999999999999998754432 234567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+....  .   ........++.|++.|+.|||+.+                ++|+||||+||++++++.++|+
T Consensus        85 ~~~~l~~~i~~~--~---~~~~~~~~~~~~l~~~l~~lh~~~----------------i~h~dl~p~Ni~i~~~~~~~l~  143 (277)
T cd06641          85 GGGSALDLLEPG--P---LDETQIATILREILKGLDYLHSEK----------------KIHRDIKAANVLLSEHGEVKLA  143 (277)
T ss_pred             CCCcHHHHHhcC--C---CCHHHHHHHHHHHHHHHHHHccCC----------------eecCCCCHHhEEECCCCCEEEe
Confidence            988 43332221  2   244555677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++.......  .....++..|++||....  ....+|.|+   ++|++ .++.+||..
T Consensus       144 dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l-~~g~~p~~~  203 (277)
T cd06641         144 DFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL-AKGEPPHSE  203 (277)
T ss_pred             ecccceecccchhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHH-HcCCCCCCc
Confidence            999997664432  223456778899997432  244566666   45555 456667643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.93  E-value=2.3e-24  Score=195.98  Aligned_cols=185  Identities=15%  Similarity=0.066  Sum_probs=136.9

Q ss_pred             CCCceEEEeceeCCCCC----cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGF----PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~----~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .++...||+|..+.+|.    .||+|.+..... ......+.+|+.+++.++|+|+        +++++++.. ...++|
T Consensus        17 ~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~-~~~~~v   86 (279)
T cd05057          17 SGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS-PKANKEILDEAYVMASVDHPHV--------VRLLGICLS-SQVQLI   86 (279)
T ss_pred             CCCCccEEEEEEecCCCCcceEEEEEeccCCCC-HHHHHHHHHHHHHHHhCCCCCc--------ceEEEEEec-CceEEE
Confidence            46677999999887765    589998876544 3344567789999999999999        999999887 788999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.++ +..........   .....++.++.|++.||.|||+++                ++||||||+||++++++.
T Consensus        87 ~e~~~~g~L~~~l~~~~~~---~~~~~~~~~~~qi~~~l~~LH~~~----------------i~H~di~p~nil~~~~~~  147 (279)
T cd05057          87 TQLMPLGCLLDYVRNHKDN---IGSQYLLNWCVQIAKGMSYLEEKR----------------LVHRDLAARNVLVKTPQH  147 (279)
T ss_pred             EecCCCCcHHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHHhCC----------------EEecccCcceEEEcCCCe
Confidence            9999888 43332222112   245566778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCCCc----cccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKPHA----SVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~~----~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +||+|||+++.........    ..++..|++||... ..+ ..+|.|+   ++|+++..+..||.+.
T Consensus       148 ~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  215 (279)
T cd05057         148 VKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGI  215 (279)
T ss_pred             EEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCC
Confidence            9999999998765433211    11245688888743 333 3556666   5566665467776543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.93  E-value=1.4e-24  Score=195.17  Aligned_cols=183  Identities=15%  Similarity=0.045  Sum_probs=135.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|... .+..||+|.++.....   ...+.+|+.++++++|+|+        +++++++. .+..|++|||+
T Consensus        16 ~g~~~~v~~~~~~-~~~~~~~k~~~~~~~~---~~~~~~E~~~l~~l~~~~i--------~~~~~~~~-~~~~~lv~e~~   82 (260)
T cd05070          16 NGQFGEVWMGTWN-GNTKVAVKTLKPGTMS---PESFLEEAQIMKKLRHDKL--------VQLYAVVS-EEPIYIVTEYM   82 (260)
T ss_pred             cccCceEEEEEec-CCceeEEEEecCCCCC---HHHHHHHHHHHHhcCCCce--------EEEEeEEC-CCCcEEEEEec
Confidence            4666789999766 5677999999865442   2357789999999999999        99998875 45689999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .++ +..+.....  ...........++.|++.||.|||+++                ++||||||+||++++++.++|+
T Consensus        83 ~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~al~~lH~~~----------------i~H~di~p~Nili~~~~~~~l~  144 (260)
T cd05070          83 SKGSLLDFLKDGE--GRALKLPNLVDMAAQVAAGMAYIERMN----------------YIHRDLRSANILVGDGLVCKIA  144 (260)
T ss_pred             CCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCccceEEEeCCceEEeC
Confidence            887 433322211  112245556777889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCC---ccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPH---ASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~~---~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++.........   ...++..|++||+..  .....+|+|+   ++|++++.+.+||.+.
T Consensus       145 dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~  207 (260)
T cd05070         145 DFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM  207 (260)
T ss_pred             CceeeeeccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCC
Confidence            99999866543321   122345689999742  2344667777   6777777677777543

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.93  E-value=4.1e-25  Score=199.22  Aligned_cols=183  Identities=20%  Similarity=0.218  Sum_probs=136.7

Q ss_pred             CCceEEEeceeC----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          13 VSKWRVKPPSLK----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        13 ~~~~~V~~a~~~----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      |+++.||+|...    ..+..|+||.++.... ....+.+.+|++++++++||||        +++++++...+.+++||
T Consensus        10 G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni--------~~~~g~~~~~~~~~lv~   80 (259)
T PF07714_consen   10 GSFGKVYRAEWKQKDNDKNQPVAVKILKPSSS-EEEEEEFLNEIQILRKLRHPNI--------VKLYGFCIENEPLFLVM   80 (259)
T ss_dssp             ESSEEEEEEEEESTTTSSEEEEEEEEESTTSS-HHHHHHHHHHHHHHHTHSBTTB--------E-EEEEEESSSSEEEEE
T ss_pred             CCCcEEEEEEEEcccCCCCEEEEEEEeccccc-cccceeeeeccccccccccccc--------ccccccccccccccccc
Confidence            566789998887    6678899999965333 3345678889999999999999        99999999888899999


Q ss_pred             EccCCC-hh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          89 VRQSGP-KD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        89 Ey~~g~-l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||+.+| ++ ++.......+   .....+.|+.|++.||.|||+++                ++|+||+++||++++++.
T Consensus        81 e~~~~g~L~~~L~~~~~~~~---~~~~~~~i~~~i~~~l~~Lh~~~----------------iiH~~l~~~nill~~~~~  141 (259)
T PF07714_consen   81 EYCPGGSLDDYLKSKNKEPL---SEQQRLSIAIQIAEALSYLHSNN----------------IIHGNLSPSNILLDSNGQ  141 (259)
T ss_dssp             E--TTEBHHHHHHHTCTTTS---BHHHHHHHHHHHHHHHHHHHHTT----------------EEEST-SGGGEEEETTTE
T ss_pred             cccccccccccccccccccc---ccccccccccccccccccccccc----------------cccccccccccccccccc
Confidence            999977 44 4433312233   45566788889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC----CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKP----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      +||+|||++........    ........|++||...  .....+|+|+   ++||++..+..|+.
T Consensus       142 ~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~  207 (259)
T PF07714_consen  142 VKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFS  207 (259)
T ss_dssp             EEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999987733221    2223456788998843  2355777777   77888776666653

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.93  E-value=1.9e-24  Score=194.31  Aligned_cols=183  Identities=16%  Similarity=0.098  Sum_probs=136.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||+|..+. ++.||+|.+......   ...+.+|+.+++.++|+|+        +++++++. .+.+|++|||+
T Consensus        16 ~G~~g~v~~~~~~~-~~~~a~K~~~~~~~~---~~~~~~E~~~l~~l~h~~i--------~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05067          16 AGQFGEVWMGYYNG-HTKVAIKSLKQGSMS---PEAFLAEANLMKQLQHPRL--------VRLYAVVT-QEPIYIITEYM   82 (260)
T ss_pred             cCccceEEeeecCC-CceEEEEEecCCCCc---HHHHHHHHHHHHhcCCcCe--------eeEEEEEc-cCCcEEEEEcC
Confidence            46677999998654 788999999865542   2357789999999999999        99998874 56789999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .++ + +.+.......+   .....+.++.|++.||.|||+.+                ++||||||+||++++++.++|
T Consensus        83 ~~~~L~~~~~~~~~~~~---~~~~~~~i~~~i~~al~~LH~~~----------------i~H~dl~p~ni~i~~~~~~~l  143 (260)
T cd05067          83 ENGSLVDFLKTPEGIKL---TINKLIDMAAQIAEGMAFIERKN----------------YIHRDLRAANILVSETLCCKI  143 (260)
T ss_pred             CCCCHHHHHHhcCCCCC---CHHHHHHHHHHHHHHHHHHhcCC----------------eecccccHHhEEEcCCCCEEE
Confidence            887 4 33322221122   44556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCC---ccccCcccccccccccc--CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPH---ASVESDCILHGYIKKLG--GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~~---~~~~t~~~~~~~v~~~~--~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++.........   ...++..|++||+....  +..+|+|+   ++|+++..+.+||.+.+
T Consensus       144 ~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  208 (260)
T cd05067         144 ADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMT  208 (260)
T ss_pred             ccCcceeecCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCC
Confidence            999999876533221   22345678999975322  34566666   66777765787875543

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG1094|consensus

Probab=99.93  E-value=2.2e-25  Score=210.70  Aligned_cols=176  Identities=13%  Similarity=0.066  Sum_probs=143.5

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      +-++.|.+|.-.. +..||+|.++...... ..+.|..|+++|.+|+||||        |.+++++..++.+++||||++
T Consensus       549 GqFGEVhLCeveg-~lkVAVK~Lr~~a~~~-~r~~F~kEIkiLsqLkhPNI--------veLvGVC~~DePicmI~EYmE  618 (807)
T KOG1094|consen  549 GQFGEVHLCEVEG-PLKVAVKILRPDATKN-ARNDFLKEIKILSRLKHPNI--------VELLGVCVQDDPLCMITEYME  618 (807)
T ss_pred             cccceeEEEEecC-ceEEEEeecCcccchh-HHHHHHHHHHHHhccCCCCe--------eEEEeeeecCCchHHHHHHHh
Confidence            4566888887555 7899999999877644 35678899999999999999        999999999999999999999


Q ss_pred             CC-hh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          93 GP-KD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        93 g~-l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +| +. ++..+.. .  .......+.|+.||++|+.||.+-+                ++||||.+.|+|++.++++||+
T Consensus       619 nGDLnqFl~ahea-p--t~~t~~~vsi~tqiasgmaYLes~n----------------fVHrd~a~rNcLv~~e~~iKia  679 (807)
T KOG1094|consen  619 NGDLNQFLSAHEL-P--TAETAPGVSICTQIASGMAYLESLN----------------FVHRDLATRNCLVDGEFTIKIA  679 (807)
T ss_pred             cCcHHHHHHhccC-c--ccccchhHHHHHHHHHHHHHHHhhc----------------hhhccccccceeecCcccEEec
Confidence            88 43 4433322 1  1355566789999999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCcccc----Ccccccccc--ccccCCcceeeh---hHHHHHcC
Q psy6542         171 DLGLACDFSKKKPHASVE----SDCILHGYI--KKLGGPFVSAWQ---TRYAKLFP  217 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~----t~~~~~~~v--~~~~~~~~~~w~---~~~~~l~~  217 (334)
                      |||.++.+-.+......|    ...||++|.  ..+.++.+|+|.   ++||++..
T Consensus       680 dfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~  735 (807)
T KOG1094|consen  680 DFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFML  735 (807)
T ss_pred             CcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHH
Confidence            999999877766544433    467888885  455577888888   88888753

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.92  E-value=4.5e-24  Score=191.89  Aligned_cols=187  Identities=15%  Similarity=0.113  Sum_probs=143.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||++....++..||||++....... ..+.+.+|+++++.++|+|+        +++++.+..++..|+||||+
T Consensus        11 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~iv~e~~   81 (267)
T cd06610          11 VGATAVVYAAICLPNNEKVAIKRIDLEKCQT-SVDELRKEVQAMSQCNHPNV--------VKYYTSFVVGDELWLVMPYL   81 (267)
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEEeccCCcch-HHHHHHHHHHHHHhcCCCCE--------EEEEEEEeeCCEEEEEEecc
Confidence            4667899999999999999999998655433 44578889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+...... ........+..++.|++.||.|||+.+                ++||||||+||++++++.++|+
T Consensus        82 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ql~~al~~lh~~~----------------i~h~~l~p~ni~~~~~~~~~l~  144 (267)
T cd06610          82 SGGSLLDIMKSSYP-RGGLDEAIIATVLKEVLKGLEYLHSNG----------------QIHRDIKAGNILLGEDGSVKIA  144 (267)
T ss_pred             CCCcHHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHhEEEcCCCCEEEc
Confidence            988 4333332211 112245556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC------CccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP------HASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~------~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++........      ....|+..|++||+...   ....+|.|+   ++|+++ ++..||...
T Consensus       145 df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~-~g~~p~~~~  210 (267)
T cd06610         145 DFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELA-TGAAPYSKY  210 (267)
T ss_pred             ccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHH-hCCCCcccc
Confidence            9999986654432      23457888999997432   234566666   555555 466676543

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.92  E-value=4.1e-24  Score=193.04  Aligned_cols=184  Identities=18%  Similarity=0.140  Sum_probs=140.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||++.+..++..||+|.+.....  ...+.+.+|+.+++.++|+||        +++++++..++.+++||||+
T Consensus        18 ~g~~g~v~~~~~~~~~~~v~~k~~~~~~~--~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~   87 (268)
T cd06624          18 KGTYGIVYAARDLSTQVRIAIKEIPERDS--RYVQPLHEEIALHSYLKHRNI--------VQYLGSDSENGFFKIFMEQV   87 (268)
T ss_pred             cCCceEEEEeEecCCCcEEEEEEecCCCH--HHHHHHHHHHHHHHhcCCCCe--------eeeeeeeccCCEEEEEEecC
Confidence            57788999999999999999999875443  234578889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-CCCEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-HGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-~~~vkl  169 (334)
                      .|+ +............ .....+..++.|++.||.|||+++                |+||||||+||+++. ++.++|
T Consensus        88 ~~~~L~~~l~~~~~~~~-~~~~~~~~~~~qi~~al~~lH~~~----------------i~h~dl~p~nil~~~~~~~~~l  150 (268)
T cd06624          88 PGGSLSALLRSKWGPLK-DNEQTIIFYTKQILEGLKYLHDNQ----------------IVHRDIKGDNVLVNTYSGVVKI  150 (268)
T ss_pred             CCCCHHHHHHHhcccCC-CcHHHHHHHHHHHHHHHHHHHHCC----------------EeecCCCHHHEEEcCCCCeEEE
Confidence            987 5443333211110 133445566779999999999999                999999999999976 678999


Q ss_pred             EecccccccCCCC--CCccccCccccccccccc----cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKKL----GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~----~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      +|||++.......  .....++..|++||+...    ....+|+|+   ++|+++. +..||.
T Consensus       151 ~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~-g~~p~~  212 (268)
T cd06624         151 SDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMAT-GKPPFI  212 (268)
T ss_pred             ecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHh-CCCCCc
Confidence            9999997654322  223356788999997432    245677777   5666655 556654

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.92  E-value=2.7e-24  Score=196.61  Aligned_cols=185  Identities=15%  Similarity=0.136  Sum_probs=137.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecC-----CeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEP-----NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~-----~~~~   85 (334)
                      .++...||++.++.+++.||+|++.....   ....+.+|+.+++.+ +|||+        +++++++...     +.+|
T Consensus        32 ~g~~~~vy~~~~~~~~~~~aik~~~~~~~---~~~~~~~e~~~l~~l~~h~ni--------~~~~~~~~~~~~~~~~~~~  100 (291)
T cd06639          32 KGTYGKVYKVTNKKDGSLAAVKILDPISD---VDEEIEAEYNILQSLPNHPNV--------VKFYGMFYKADKLVGGQLW  100 (291)
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEeccccc---HHHHHHHHHHHHHHhcCCCCe--------EEEEEEEEeccccCCCeeE
Confidence            45567999999999999999999975432   234566799999998 89999        9999998743     4689


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +..+...............++.++.|++.||.|||+.+                ++||||||+||+++++
T Consensus       101 lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~----------------ivH~dlkp~nili~~~  164 (291)
T cd06639         101 LVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNR----------------IIHRDVKGNNILLTTE  164 (291)
T ss_pred             EEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------eeccCCCHHHEEEcCC
Confidence            999999987 43333221111122245556777889999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCC--CCccccCccccccccccc-------cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKK--PHASVESDCILHGYIKKL-------GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~-------~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +.+||+|||++.......  .....++..|++||+...       .+..+|+|+   ++|+++ .+.+||..
T Consensus       165 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~-~g~~p~~~  235 (291)
T cd06639         165 GGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELG-DGDPPLFD  235 (291)
T ss_pred             CCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHh-hCCCCCCC
Confidence            999999999998654432  233467888999997422       234566666   555554 56667644

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.92  E-value=2.2e-25  Score=205.24  Aligned_cols=188  Identities=19%  Similarity=0.177  Sum_probs=139.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--------CCe
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--------PNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--------~~~   83 (334)
                      .++...||+|.++.+++.||||.+............+.+|+++++.++||||        +++++++.+        ...
T Consensus        18 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~~~~~   89 (311)
T cd07866          18 EGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNV--------VPLIDMAVERPDKSKRKRGS   89 (311)
T ss_pred             cCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCc--------cchhhheecccccccccCce
Confidence            4667899999999999999999997655433334456789999999999999        888887653        335


Q ss_pred             EEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          84 HYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        84 ~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +|+||||+.+++..........+   ....+..++.|++.||.|||+.+                ++||||||+||++++
T Consensus        90 ~~lv~~~~~~~l~~~~~~~~~~~---~~~~~~~i~~~l~~al~~lH~~~----------------i~H~dl~p~nil~~~  150 (311)
T cd07866          90 VYMVTPYMDHDLSGLLENPSVKL---TESQIKCYMLQLLEGINYLHENH----------------ILHRDIKAANILIDN  150 (311)
T ss_pred             EEEEEecCCcCHHHHHhccccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEECC
Confidence            79999999988433323221223   45556677789999999999999                999999999999999


Q ss_pred             CCCEEEEecccccccCCCCC-------------CccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         164 HGHVRISDLGLACDFSKKKP-------------HASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~~-------------~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ++.++|+|||+++.......             ....+++.|++||+...   ....+|+|+   ++|++ ..+.+||.+
T Consensus       151 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el-~~g~~~~~~  229 (311)
T cd07866         151 QGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEM-FTRRPILQG  229 (311)
T ss_pred             CCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHH-HhCCCCCCC
Confidence            99999999999986543321             11245677999997422   244567777   45555 556777766


Q ss_pred             CCC
Q psy6542         225 ESG  227 (334)
Q Consensus       225 ~~~  227 (334)
                      .+.
T Consensus       230 ~~~  232 (311)
T cd07866         230 KSD  232 (311)
T ss_pred             CCH
Confidence            553

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG4257|consensus

Probab=99.92  E-value=6.3e-25  Score=208.95  Aligned_cols=227  Identities=11%  Similarity=0.058  Sum_probs=169.7

Q ss_pred             CCceEEEeceeCC----CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          13 VSKWRVKPPSLKP----LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        13 ~~~~~V~~a~~~~----~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      |.++-||++....    ..-.||||..+.+...+. .+.|..|..+|++++||||        |++.+++. .+..||||
T Consensus       400 GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~-tekflqEa~iMrnfdHphI--------ikLIGv~~-e~P~Wivm  469 (974)
T KOG4257|consen  400 GQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDD-TEKFLQEASIMRNFDHPHI--------IKLIGVCV-EQPMWIVM  469 (974)
T ss_pred             CcccceeeeEecccccCcceeeeeehhccCCChhh-HHHHHHHHHHHHhCCCcch--------hheeeeee-ccceeEEE
Confidence            5667889887643    345589999988766443 5678889999999999999        99999995 56899999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      |++.-| +..........   +....+..+++||+.||.|||+.+                ++||||...|||+.+..+|
T Consensus       470 EL~~~GELr~yLq~nk~s---L~l~tL~ly~~Qi~talaYLeSkr----------------fVHRDIAaRNiLVsSp~CV  530 (974)
T KOG4257|consen  470 ELAPLGELREYLQQNKDS---LPLRTLTLYCYQICTALAYLESKR----------------FVHRDIAARNILVSSPQCV  530 (974)
T ss_pred             ecccchhHHHHHHhcccc---chHHHHHHHHHHHHHHHHHHHhhc----------------hhhhhhhhhheeecCccee
Confidence            999988 53333332222   255666778899999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCC-Ccccc--Cccccccccc--cccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccc
Q psy6542         168 RISDLGLACDFSKKKP-HASVE--SDCILHGYIK--KLGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQI  239 (334)
Q Consensus       168 kl~DFGla~~~~~~~~-~~~~~--t~~~~~~~v~--~~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  239 (334)
                      ||+||||+|.+..... ..+.|  ..-+|+||-.  +..++.+|+|-   |+||.+..|.-||.+-.+.   ++|     
T Consensus       531 KLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNs---DVI-----  602 (974)
T KOG4257|consen  531 KLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNS---DVI-----  602 (974)
T ss_pred             eecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCcccccccc---ceE-----
Confidence            9999999998766653 33334  5677888863  44466667776   9999999999998876532   111     


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC  299 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~  299 (334)
                                       ..+  +-..|+.+|    +.+||.+..++-+||.-++..+.+.
T Consensus       603 -----------------~~i--EnGeRlP~P----~nCPp~LYslmskcWayeP~kRPrf  639 (974)
T KOG4257|consen  603 -----------------GHI--ENGERLPCP----PNCPPALYSLMSKCWAYEPSKRPRF  639 (974)
T ss_pred             -----------------EEe--cCCCCCCCC----CCCChHHHHHHHHHhccCcccCCcH
Confidence                             001  011235555    7888999998888888776555554

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.92  E-value=1.1e-24  Score=196.91  Aligned_cols=241  Identities=15%  Similarity=0.038  Sum_probs=160.7

Q ss_pred             CCCceEEEeceeC---CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC------
Q psy6542          12 RVSKWRVKPPSLK---PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN------   82 (334)
Q Consensus        12 ~~~~~~V~~a~~~---~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~------   82 (334)
                      +++...||+|..+   .+++.||||++..........+.+.+|+++++.++|||+        +++++++...+      
T Consensus         9 ~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           9 KGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNV--------IKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCc--------ceEEEEEccCCCCCccc
Confidence            4566688888754   468899999998765544445667889999999999999        99999886432      


Q ss_pred             eEEEEEEccCCC-hh-HHhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          83 SHYIIGVRQSGP-KD-QISRSKIN-RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        83 ~~~ivmEy~~g~-l~-~l~~~~~~-~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                      ..++++||+.++ +. ++...... ..........+.++.|++.||.|||+.+                |+||||||+||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dikp~ni  144 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKN----------------FIHRDLAARNC  144 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------EeecccchhhE
Confidence            247888999887 43 33222111 1112345556778889999999999999                99999999999


Q ss_pred             eeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCc
Q psy6542         160 LLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSK  230 (334)
Q Consensus       160 Ll~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~  230 (334)
                      ++++++.+||+|||+++......    .....+++.|++|+... .. ...+|+|+   ++|+++..+.+||.+......
T Consensus       145 li~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~  224 (273)
T cd05074         145 MLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEI  224 (273)
T ss_pred             EEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHH
Confidence            99999999999999998664432    12223345677888642 22 44566666   667776657777654321100


Q ss_pred             ccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         231 PELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                      ...                     +..   ..       .....+..+..+..  +..+|.+.+|..|+ +.++++.+..
T Consensus       225 ~~~---------------------~~~---~~-------~~~~~~~~~~~~~~--l~~~~l~~~p~~Rps~~~~~~~l~~  271 (273)
T cd05074         225 YNY---------------------LIK---GN-------RLKQPPDCLEDVYE--LMCQCWSPEPKCRPSFQHLRDQLEL  271 (273)
T ss_pred             HHH---------------------HHc---CC-------cCCCCCCCCHHHHH--HHHHHcCCChhhCcCHHHHHHHHHh
Confidence            000                     000   00       00011122333344  77788888888888 8888877754

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.92  E-value=4.5e-25  Score=198.41  Aligned_cols=181  Identities=12%  Similarity=0.048  Sum_probs=135.1

Q ss_pred             CCCceEEEeceeCCCCCc-------EEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeE
Q psy6542          12 RVSKWRVKPPSLKPLGFP-------IQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~-------vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      +++...||+|.++.++..       ||+|.+....  ....+.+.+|+.+++.++|||+        +++++++..++..
T Consensus         5 ~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~~~h~~i--------v~~~~~~~~~~~~   74 (258)
T cd05078           5 QGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH--RNYSESFFEAASMMSQLSHKHL--------VLNYGVCVCGDES   74 (258)
T ss_pred             cccchhheeeeecccccccccccchhhHHhhcchh--HHHHHHHHHHHHHHHhCCCCCh--------hheeeEEEeCCCc
Confidence            466778999988765544       8999886433  2234567789999999999999        9999999998999


Q ss_pred             EEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          85 YIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      ++||||+++| ++.+.......+   .....+.++.|++.||.|||+++                |+||||||+||+++.
T Consensus        75 ~lv~e~~~~g~L~~~l~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------iiH~dlkp~nili~~  135 (258)
T cd05078          75 IMVQEYVKFGSLDTYLKKNKNLI---NISWKLEVAKQLAWALHFLEDKG----------------LTHGNVCAKNVLLIR  135 (258)
T ss_pred             EEEEecCCCCcHHHHHhcCCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCccceEEEec
Confidence            9999999998 544433322122   34445677889999999999999                999999999999987


Q ss_pred             CCC--------EEEEecccccccCCCCCCccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCC
Q psy6542         164 HGH--------VRISDLGLACDFSKKKPHASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       164 ~~~--------vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      ++.        ++++|||++......  ....++..|++||+...  . ...+|+|+   ++|+++.+..+|+.
T Consensus       136 ~~~~~~~~~~~~~l~d~g~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~  207 (258)
T cd05078         136 EEDRKTGNPPFIKLSDPGISITVLPK--EILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLS  207 (258)
T ss_pred             ccccccCCCceEEecccccccccCCc--hhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChh
Confidence            765        699999998755432  23456778999998543  2 33566666   66777666555543

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.92  E-value=2.3e-24  Score=193.99  Aligned_cols=183  Identities=14%  Similarity=0.053  Sum_probs=135.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||++.... +..||+|.++....   ....+.+|+++++.++|+||        +++++++.+ ...|++|||+
T Consensus        16 ~g~~~~vy~~~~~~-~~~~~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~-~~~~~v~e~~   82 (260)
T cd05073          16 AGQFGEVWMATYNK-HTKVAVKTMKPGSM---SVEAFLAEANVMKTLQHDKL--------VKLHAVVTK-EPIYIITEFM   82 (260)
T ss_pred             CccceEEEEEEecC-CccEEEEecCCChh---HHHHHHHHHHHHHhcCCCCc--------ceEEEEEcC-CCeEEEEEeC
Confidence            56678999997554 66799999875432   23467789999999999999        999999887 7789999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +++ +..+.....  .........+.++.|++.||.|||+.+                ++||||||+||+++.++.+||+
T Consensus        83 ~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~aL~~lH~~~----------------i~H~dl~p~ni~i~~~~~~~l~  144 (260)
T cd05073          83 AKGSLLDFLKSDE--GSKQPLPKLIDFSAQIAEGMAFIEQRN----------------YIHRDLRAANILVSASLVCKIA  144 (260)
T ss_pred             CCCcHHHHHHhCC--ccccCHHHHHHHHHHHHHHHHHHHhCC----------------ccccccCcceEEEcCCCcEEEC
Confidence            887 433323211  111244456677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCC---ccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPH---ASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~~---~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++.........   ...++..|++||+...  ....+|.|+   ++|++++++.+||.+.
T Consensus       145 d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~  207 (260)
T cd05073         145 DFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM  207 (260)
T ss_pred             CCcceeeccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCC
Confidence            99999866543221   1223456889997532  244566677   6677766678787544

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG2345|consensus

Probab=99.92  E-value=3.4e-25  Score=190.41  Aligned_cols=242  Identities=16%  Similarity=0.088  Sum_probs=167.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-----CCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-----PNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-----~~~~~i   86 (334)
                      .++.-.||++.+..++..+|+|.+.....+  ..+..++|++..++++|||+        ++++++...     ....||
T Consensus        31 eGGfsfv~LV~~~s~~~~YAlKkI~c~~~~--~~e~~~rEid~~rkf~s~~v--------l~l~dh~l~~~~D~~~~~yl  100 (302)
T KOG2345|consen   31 EGGFSFVDLVKGLSTGHLYALKKILCHSQE--DIEEALREIDNHRKFNSPNV--------LRLVDHQLREEKDGKHEAYL  100 (302)
T ss_pred             CCCceeeeeecccCcccchhhheeeccchH--HHHHHHHHHHHHHhhCCcch--------HHHHHHHHHhhccCceeEEE
Confidence            466778999999999999999999876643  33456779999999999999        666554432     234899


Q ss_pred             EEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          87 IGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        87 vmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      ++.|...|  .|.+...+.+. ...++..++.|+.++++||.+||+..              ||+.||||||+|||++++
T Consensus       101 l~Pyy~~Gsl~d~i~~~k~kg-~~~sE~~iL~if~gic~gL~~lH~~~--------------~~yAH~DiKP~NILls~~  165 (302)
T KOG2345|consen  101 LLPYYKRGSLLDEIERLKIKG-NFVSEAQILWIFLGICRGLEALHEKE--------------PPYAHRDIKPANILLSDS  165 (302)
T ss_pred             EeehhccccHHHHHHHHhhcC-CccCHHHHHHHHHHHHHHHHHHhccC--------------CcccccCCCcceeEecCC
Confidence            99976555  66665555433 33467778899999999999999998              679999999999999999


Q ss_pred             CCEEEEecccccccCCCCCC-----------ccccCcccccccccc-----ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKKPH-----------ASVESDCILHGYIKK-----LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~~-----------~~~~t~~~~~~~v~~-----~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +..++.|||.++...-....           .-.-|..|.+||+..     .-+.+.|+|+   ++|++|++..+.....
T Consensus       166 ~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~  245 (302)
T KOG2345|consen  166 GLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIY  245 (302)
T ss_pred             CceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHh
Confidence            99999999999855322110           112267788999842     2256788888   8899988877422111


Q ss_pred             CCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHH
Q psy6542         226 SGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELL  304 (334)
Q Consensus       226 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL  304 (334)
                      ....+-.+.+..                         ++....    .....+..+.+  ++.|+.+.+|..|| +.+++
T Consensus       246 ~~GgSlaLAv~n-------------------------~q~s~P----~~~~yse~l~~--lik~mlqvdP~qRP~i~~ll  294 (302)
T KOG2345|consen  246 QQGGSLALAVQN-------------------------AQISIP----NSSRYSEALHQ--LIKSMLQVDPNQRPTIPELL  294 (302)
T ss_pred             hcCCeEEEeeec-------------------------cccccC----CCCCccHHHHH--HHHHHhcCCcccCCCHHHHH
Confidence            111111111000                         000011    11123334444  88999999999999 88888


Q ss_pred             HHHHH
Q psy6542         305 GSMAR  309 (334)
Q Consensus       305 ~~l~~  309 (334)
                      .++..
T Consensus       295 ~~~d~  299 (302)
T KOG2345|consen  295 SKLDD  299 (302)
T ss_pred             HHHHh
Confidence            77754

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.92  E-value=3.1e-25  Score=207.46  Aligned_cols=183  Identities=20%  Similarity=0.239  Sum_probs=137.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC-----CeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP-----NSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~-----~~~~i   86 (334)
                      .++...||++.+..+|+.||||.++.... ......+.+|+.+++.++|+||        +++++++...     ...|+
T Consensus        15 ~G~~g~vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~~~~~~l   85 (336)
T cd07849          15 EGAYGMVCSATHKPTGVKVAIKKISPFEH-QTFCQRTLREIKILRRFKHENI--------IGILDIIRPPSFESFNDVYI   85 (336)
T ss_pred             ecCCeEEEEEEEcCCCCeEEEEEeccccc-chhHHHHHHHHHHHHhCCCCCc--------CchhheeecccccccceEEE
Confidence            35677999999999999999999975332 2234556789999999999999        9998876643     35899


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      +|||+.+++..+....  .+   ....+..++.|++.||.|||+.+                |+||||||+||++++++.
T Consensus        86 v~e~~~~~l~~~~~~~--~l---~~~~~~~i~~ql~~aL~~LH~~~----------------ivH~dlkp~Nill~~~~~  144 (336)
T cd07849          86 VQELMETDLYKLIKTQ--HL---SNDHIQYFLYQILRGLKYIHSAN----------------VLHRDLKPSNLLLNTNCD  144 (336)
T ss_pred             EehhcccCHHHHHhcC--CC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeccCCCHHHEEECCCCC
Confidence            9999998754332221  23   34455667789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC-----CccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKP-----HASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +||+|||++........     ....|+..|++||+..  .. +..+|+|+   ++|+++. +..||.+.
T Consensus       145 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~-G~~~f~~~  213 (336)
T cd07849         145 LKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLS-NRPLFPGK  213 (336)
T ss_pred             EEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCC
Confidence            99999999986543321     2245688899999732  22 44566676   5666655 56677554

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.92  E-value=9.4e-25  Score=195.42  Aligned_cols=185  Identities=14%  Similarity=0.131  Sum_probs=141.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||++..+.+|..||+|.+..........+.+.+|+++++.++|+|+        +++++.+.+++.+|+|+||+
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i--------~~~~~~~~~~~~~~lv~e~~   81 (257)
T cd08225          10 EGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNI--------VTFFASFQENGRLFIVMEYC   81 (257)
T ss_pred             CCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCCh--------hhhhheeccCCeEEEEEecC
Confidence            4677899999999999999999998754433344567789999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC-EE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH-VR  168 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~-vk  168 (334)
                      .|+ + +.+.......   ........++.|++.||.|||+.+                ++|+||||+||++++++. +|
T Consensus        82 ~~~~L~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~lh~~~----------------i~H~dl~~~nil~~~~~~~~~  142 (257)
T cd08225          82 DGGDLMKRINRQRGVL---FSEDQILSWFVQISLGLKHIHDRK----------------ILHRDIKSQNIFLSKNGMVAK  142 (257)
T ss_pred             CCCcHHHHHHhccCCC---CCHHHHHHHHHHHHHHHHHHHHCC----------------cccccCCHHHEEEcCCCCeEE
Confidence            887 3 3332222111   245556777889999999999999                999999999999998864 69


Q ss_pred             EEecccccccCCCCC--CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP--HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       169 l~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |+|||++........  ....|++.|++||+..  .....+|+|+   ++++++ ++..||.+
T Consensus       143 l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~-~g~~p~~~  204 (257)
T cd08225         143 LGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELC-TLKHPFEG  204 (257)
T ss_pred             ecccccchhccCCcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHH-hCCCCCCC
Confidence            999999987654432  2235788899999743  2345677777   555654 45556543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.92  E-value=4.5e-24  Score=189.47  Aligned_cols=184  Identities=17%  Similarity=0.165  Sum_probs=144.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++.+..+++.|++|++.....  ...+.+.+|+++++.++|+|+        +++++.+..++..+++|||+
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~l~~e~~   79 (253)
T cd05122          10 KGGFGEVYKARHKRTGKEVAIKVIKLESK--EKKEKIINEIQILKKCKHPNI--------VKYYGSYLKKDELWIVMEFC   79 (253)
T ss_pred             cCCceEEEEEEECCCCcEEEEEEecccch--hHHHHHHHHHHHHHhCCCCCE--------eEEEEEEecCCeEEEEEecC
Confidence            45678999999999999999999986554  244577889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+.......   ........++.|++.||.|||+++                ++|+||+|+||++++++.++|+
T Consensus        80 ~~~~L~~~~~~~~~~---~~~~~~~~i~~~i~~~l~~lh~~~----------------i~h~dl~p~ni~i~~~~~~~l~  140 (253)
T cd05122          80 SGGSLKDLLKSTNQT---LTESQIAYVCKELLKGLEYLHSNG----------------IIHRDIKAANILLTSDGEVKLI  140 (253)
T ss_pred             CCCcHHHHHhhcCCC---CCHHHHHHHHHHHHHHHHHhhcCC----------------EecCCCCHHHEEEccCCeEEEe
Confidence            977 54443332122   245556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC-CCccccCcccccccccccc--CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK-PHASVESDCILHGYIKKLG--GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~~--~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++....... .....++..|++||.....  ...+|+|+   ++|+++. +..||...
T Consensus       141 d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~  200 (253)
T cd05122         141 DFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAE-GKPPYSEL  200 (253)
T ss_pred             eccccccccccccccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHh-CCCCCCCC
Confidence            999998776654 3445678889999975322  34566666   5566554 55566443

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.92  E-value=1.4e-24  Score=194.56  Aligned_cols=182  Identities=12%  Similarity=0.068  Sum_probs=136.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||++.... +..+|+|.++.....   ...+.+|+++++.++|||+        +++++++......|+||||+
T Consensus        14 ~g~~g~v~~~~~~~-~~~~~~k~~~~~~~~---~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd05112          14 SGQFGLVWLGYWLE-KRKVAIKTIREGAMS---EEDFIEEAQVMMKLSHPKL--------VQLYGVCTERSPICLVFEFM   81 (256)
T ss_pred             CcccceEEEEEEeC-CCeEEEEECCCCCCC---HHHHHHHHHHHHhCCCCCe--------eeEEEEEccCCceEEEEEcC
Confidence            35556899998754 778999998755442   2356779999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +..........+   ....++.++.|++.||.|||+.+                ++||||||+||+++.++.++|+
T Consensus        82 ~~~~L~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~lH~~~----------------i~h~dl~p~ni~i~~~~~~~l~  142 (256)
T cd05112          82 EHGCLSDYLRAQRGKF---SQETLLGMCLDVCEGMAYLESSN----------------VIHRDLAARNCLVGENQVVKVS  142 (256)
T ss_pred             CCCcHHHHHHhCccCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccccccceEEEcCCCeEEEC
Confidence            988 443333221122   44556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCc---cccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPHA---SVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~~~~---~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||+++.........   ..++..|++||+.. .. ...+|+|+   ++|+++..+..||..
T Consensus       143 d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~  204 (256)
T cd05112         143 DFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYEN  204 (256)
T ss_pred             CCcceeecccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCc
Confidence            999998664433221   22345788999743 22 33566666   677777667777644

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.92  E-value=2.7e-24  Score=192.33  Aligned_cols=181  Identities=15%  Similarity=0.149  Sum_probs=141.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .+....||++....+++.||+|.++....    .+.+.+|+++++.++|+|+        +++++.+.++..+|++|||+
T Consensus        13 ~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~e~~~~~~l~~~~i--------~~~~~~~~~~~~~~l~~e~~   80 (256)
T cd06612          13 EGSYGSVYKAIHKETGQVVAIKVVPVEED----LQEIIKEISILKQCDSPYI--------VKYYGSYFKNTDLWIVMEYC   80 (256)
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEEeecHHH----HHHHHHHHHHHHhCCCCcE--------eeeeeeeecCCcEEEEEecC
Confidence            45677999999999999999999875432    5678889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +..+.......+   .......++.|++.||.|||+.+                ++|+||+|+||++++++.++|+
T Consensus        81 ~~~~L~~~l~~~~~~l---~~~~~~~~~~~l~~~l~~lh~~~----------------i~H~dl~~~ni~~~~~~~~~l~  141 (256)
T cd06612          81 GAGSVSDIMKITNKTL---TEEEIAAILYQTLKGLEYLHSNK----------------KIHRDIKAGNILLNEEGQAKLA  141 (256)
T ss_pred             CCCcHHHHHHhCccCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCcceEEECCCCcEEEc
Confidence            988 443333222222   44556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++.......  .....++..|++||+.. .. ...+|+|+   ++|+++ ++..||..
T Consensus       142 dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~-~g~~p~~~  201 (256)
T cd06612         142 DFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMA-EGKPPYSD  201 (256)
T ss_pred             ccccchhcccCccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHH-hCCCCCCC
Confidence            999998765443  23345678899999742 22 34566676   566655 45666644

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.92  E-value=8.7e-25  Score=205.37  Aligned_cols=184  Identities=19%  Similarity=0.188  Sum_probs=139.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC------CeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP------NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~------~~~~   85 (334)
                      +++...||++.+..+|+.||||.+..........+.+.+|+++++.++|+||        +++++++...      +.+|
T Consensus        27 ~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~~~   98 (345)
T cd07877          27 SGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV--------IGLLDVFTPARSLEEFNDVY   98 (345)
T ss_pred             ecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcc--------cceeeeeeecccccccccEE
Confidence            4667799999999999999999998654433334567789999999999999        9999888643      3478


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      ++++++.+.+..+....  .+   ....+..++.|++.||.|||+.+                |+||||||+||++++++
T Consensus        99 lv~~~~~~~L~~~~~~~--~l---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~dlkp~NIll~~~~  157 (345)
T cd07877          99 LVTHLMGADLNNIVKCQ--KL---TDDHVQFLIYQILRGLKYIHSAD----------------IIHRDLKPSNLAVNEDC  157 (345)
T ss_pred             EEehhcccCHHHHHhcC--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeecCCChHHEEEcCCC
Confidence            99999877665443322  23   34445667789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++..... .....++..|++||+...  . ...+|+|+   ++|+++ .+..||.+.+
T Consensus       158 ~~kl~dfg~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~-~g~~pf~~~~  222 (345)
T cd07877         158 ELKILDFGLARHTDDE-MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL-TGRTLFPGTD  222 (345)
T ss_pred             CEEEeccccccccccc-ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHH-hCCCCCCCCC
Confidence            9999999999865433 233456888999997432  2 34566666   555654 4566775543

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.92  E-value=2.9e-24  Score=194.32  Aligned_cols=183  Identities=17%  Similarity=0.109  Sum_probs=138.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc--------chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH--------ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~--------~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      .++.++||+|.+..+|+.||||.++....        .....+.+..|+++++.++|+|+        +++++++..++.
T Consensus        11 ~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~   82 (272)
T cd06629          11 KGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNI--------VQYLGFETTEEY   82 (272)
T ss_pred             ccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCc--------ceEEEEeccCCc
Confidence            45677999999999999999999875322        11123467789999999999999        999999999999


Q ss_pred             EEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          84 HYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      +++||||+.|+ +....... ..+   .......++.|++.||.|||+++                ++||||+|+||+++
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~-~~l---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dl~~~nil~~  142 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTY-GRF---EEQLVRFFTEQVLEGLAYLHSKG----------------ILHRDLKADNLLVD  142 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhc-cCC---CHHHHHHHHHHHHHHHHHHhhCC----------------eeecCCChhhEEEc
Confidence            99999999988 44332322 222   33445566779999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCCC----CCccccCccccccccccc----cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         163 EHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKKL----GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~----~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      .++.++|+|||+++......    .....++..|++||+...    ....+|.|+   ++|+++. +..||.
T Consensus       143 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~-g~~p~~  213 (272)
T cd06629         143 ADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFA-GRRPWS  213 (272)
T ss_pred             CCCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHh-CCCCCc
Confidence            99999999999998654321    223456788999997432    234556666   5666655 555653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.92  E-value=9.6e-25  Score=196.97  Aligned_cols=188  Identities=15%  Similarity=0.106  Sum_probs=139.0

Q ss_pred             CCCceEEEeceeCCCC------CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLG------FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~------~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      .++.+.||++..+.++      +.||||.+....... ....+.+|+++++.++||||        +++++++..++..|
T Consensus         5 ~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~   75 (269)
T cd05044           5 SGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQ-EKKEFLKEAHLMSNFNHPNI--------VKLLGVCLLNEPQY   75 (269)
T ss_pred             cccceeEEeeeecccccCcccceeehhhhhhcccchh-hHHHHHHHHHHHHhcCCCCe--------eeEeeeecCCCCeE
Confidence            4667789999887554      789999987543222 34467789999999999999        99999999999999


Q ss_pred             EEEEccCCC-h-hHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          86 IIGVRQSGP-K-DQISRSKINR--YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        86 ivmEy~~g~-l-~~l~~~~~~~--~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      +||||++|+ + +++.......  .........+.++.|++.||.|||+.+                ++|+||||+||++
T Consensus        76 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~----------------i~H~dl~p~nil~  139 (269)
T cd05044          76 IIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMH----------------FIHRDLAARNCLV  139 (269)
T ss_pred             EEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCChheEEE
Confidence            999999987 4 3443222111  111245566778889999999999999                9999999999999


Q ss_pred             CCCC-----CEEEEecccccccCCCCC----CccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         162 DEHG-----HVRISDLGLACDFSKKKP----HASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       162 ~~~~-----~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ++++     .++|+|||+++.......    ....++..|++||+...  ....+|+|+   ++|+++..+..||..
T Consensus       140 ~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~  216 (269)
T cd05044         140 SEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPA  216 (269)
T ss_pred             ecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcc
Confidence            9887     899999999986543321    12233567888997432  245667777   777777656667643

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.92  E-value=2.4e-24  Score=195.20  Aligned_cols=188  Identities=15%  Similarity=0.093  Sum_probs=138.8

Q ss_pred             CCCceEEEeceeCC-----CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLKP-----LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-----~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++.+.||+|..+.     +.+.||+|.+..... ....+.+.+|++++++++|+|+        +++++++.+.+..|+
T Consensus        15 ~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~l   85 (275)
T cd05046          15 RGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD-ENLQSEFRRELDMFRKLSHKNV--------VRLLGLCREAEPHYM   85 (275)
T ss_pred             ccceeEEEEEEeccCCcCCCcceEEEEccCCccc-hHHHHHHHHHHHHHHhcCCcce--------eeeEEEECCCCcceE
Confidence            46778999999764     456799998875443 2245568889999999999999        999999999899999


Q ss_pred             EEEccCCC-hhHHhhhhhhh-----hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCcee
Q psy6542          87 IGVRQSGP-KDQISRSKINR-----YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANIL  160 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~-----~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiL  160 (334)
                      ||||++++ +..+.......     ...........++.|++.||.|||+.+                ++||||||+||+
T Consensus        86 v~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~----------------i~H~dlkp~Nil  149 (275)
T cd05046          86 ILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNAR----------------FVHRDLAARNCL  149 (275)
T ss_pred             EEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcC----------------cccCcCccceEE
Confidence            99999987 54333322100     002355556677889999999999999                999999999999


Q ss_pred             eCCCCCEEEEecccccccCCCC---CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         161 LDEHGHVRISDLGLACDFSKKK---PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       161 l~~~~~vkl~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ++.++.++++|||++.......   .....++..|++||... .. ...+|+|+   ++|+++..+..||..
T Consensus       150 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~  221 (275)
T cd05046         150 VSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYG  221 (275)
T ss_pred             EeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            9999999999999987543322   12234466789999743 22 34566666   667776666667643

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.92  E-value=1.5e-24  Score=202.49  Aligned_cols=186  Identities=18%  Similarity=0.132  Sum_probs=141.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchH------------HhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESR------------VAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS   79 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~------------~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~   79 (334)
                      .++.+.||+|.++.+++.||||.++.......            ....+.+|+++++.++|+||        +++++++.
T Consensus        19 ~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~   90 (335)
T PTZ00024         19 EGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENI--------MGLVDVYV   90 (335)
T ss_pred             CCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcce--------eeeeEEEe
Confidence            47778999999999999999999976543210            11246689999999999999        99999999


Q ss_pred             cCCeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          80 EPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        80 ~~~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                      .++..|+||||+.|++....... ..   ........++.|++.||.|||+.+                ++|+||||+||
T Consensus        91 ~~~~~~lv~e~~~~~l~~~l~~~-~~---~~~~~~~~~~~ql~~aL~~LH~~~----------------i~H~dl~~~ni  150 (335)
T PTZ00024         91 EGDFINLVMDIMASDLKKVVDRK-IR---LTESQVKCILLQILNGLNVLHKWY----------------FMHRDLSPANI  150 (335)
T ss_pred             cCCcEEEEEeccccCHHHHHHhc-CC---CCHHHHHHHHHHHHHHHHHHHhCC----------------eecccccHHHe
Confidence            99999999999998854433322 12   244556677889999999999999                99999999999


Q ss_pred             eeCCCCCEEEEecccccccCCC--------------C--CCccccCccccccccccc---cCCcceeeh---hHHHHHcC
Q psy6542         160 LLDEHGHVRISDLGLACDFSKK--------------K--PHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFP  217 (334)
Q Consensus       160 Ll~~~~~vkl~DFGla~~~~~~--------------~--~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~  217 (334)
                      +++.++.++|+|||++......              .  .....++..|++||+...   ....+|.|+   ++|+++. 
T Consensus       151 ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~t-  229 (335)
T PTZ00024        151 FINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLT-  229 (335)
T ss_pred             EECCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHh-
Confidence            9999999999999999866511              1  112235678899997532   234566666   5566655 


Q ss_pred             CCCCCCCCC
Q psy6542         218 NRLELHPES  226 (334)
Q Consensus       218 ~~~~~~~~~  226 (334)
                      +.+||.+..
T Consensus       230 g~~p~~~~~  238 (335)
T PTZ00024        230 GKPLFPGEN  238 (335)
T ss_pred             CCCCCCCCC
Confidence            777876655

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=2e-24  Score=193.97  Aligned_cols=183  Identities=17%  Similarity=0.084  Sum_probs=138.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||+|.+.. ++.||||.+......   .+.+.+|+++++.++|+|+        +++++++.++...++||||+
T Consensus        16 ~g~~~~v~~~~~~~-~~~~~vK~~~~~~~~---~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~v~e~~   83 (261)
T cd05034          16 AGQFGEVWMGTWNG-TTKVAVKTLKPGTMS---PEAFLQEAQIMKKLRHDKL--------VQLYAVCSEEEPIYIVTEYM   83 (261)
T ss_pred             cCcceEEEEEEEcC-CceEEEEEecCCccC---HHHHHHHHHHHhhCCCCCE--------eeeeeeeecCCceEEEEecc
Confidence            46677999998764 578999999865442   2457789999999999999        99999999889999999999


Q ss_pred             CCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .++ +...... ....+   .......++.|++.||.|||+++                ++|+||||+||++++++.++|
T Consensus        84 ~~~~L~~~i~~~~~~~~---~~~~~~~~~~~i~~al~~lh~~~----------------i~h~di~p~nili~~~~~~~l  144 (261)
T cd05034          84 SKGSLLDFLKSGEGKKL---RLPQLVDMAAQIAEGMAYLESRN----------------YIHRDLAARNILVGENLVCKI  144 (261)
T ss_pred             CCCCHHHHHhccccCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCcchheEEEcCCCCEEE
Confidence            887 4333222 21122   44556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCC---ccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPH---ASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~~~---~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||++..+......   ....+..|++||....  ....+|+|+   ++|++++.+..||.+.
T Consensus       145 ~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~  208 (261)
T cd05034         145 ADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM  208 (261)
T ss_pred             CccccceeccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999876543211   1223457888997532  244566677   6677777677787543

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG4278|consensus

Probab=99.92  E-value=2.7e-25  Score=211.32  Aligned_cols=222  Identities=14%  Similarity=0.085  Sum_probs=169.8

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC--
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP--   94 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~--   94 (334)
                      .||.+.-++-.-.||||.++.+..   ....|..|+.+|+.++|||+        |+++++|...-.+|||+|||..|  
T Consensus       282 eVYeGvWKkyslTvAVKtLKEDtM---eveEFLkEAAvMKeikHpNL--------VqLLGVCT~EpPFYIiTEfM~yGNL  350 (1157)
T KOG4278|consen  282 EVYEGVWKKYSLTVAVKTLKEDTM---EVEEFLKEAAVMKEIKHPNL--------VQLLGVCTHEPPFYIITEFMCYGNL  350 (1157)
T ss_pred             ceeeeeeeccceeeehhhhhhcch---hHHHHHHHHHHHHhhcCccH--------HHHhhhhccCCCeEEEEecccCccH
Confidence            455555555577899999997665   33467789999999999999        99999999999999999998777  


Q ss_pred             hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccc
Q psy6542          95 KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL  174 (334)
Q Consensus        95 l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGl  174 (334)
                      +|++..+...   +...-.++.++.||.+|+.||..++                +|||||...|+|+..+..||++||||
T Consensus       351 LdYLRecnr~---ev~avvLlyMAtQIsSaMeYLEkkn----------------FIHRDLAARNCLVgEnhiVKvADFGL  411 (1157)
T KOG4278|consen  351 LDYLRECNRS---EVPAVVLLYMATQISSAMEYLEKKN----------------FIHRDLAARNCLVGENHIVKVADFGL  411 (1157)
T ss_pred             HHHHHHhchh---hcchhHHHHHHHHHHHHHHHHHHhh----------------hhhhhhhhhhccccccceEEeeccch
Confidence            7888666532   2244556677889999999999999                99999999999999999999999999


Q ss_pred             ccccCCCCCCcccc---Ccccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccccccc
Q psy6542         175 ACDFSKKKPHASVE---SDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDL  246 (334)
Q Consensus       175 a~~~~~~~~~~~~~---t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  246 (334)
                      ++.+..+......|   ..-+++||-+.  ....++|+|.   ++||....+..||.|.+..                  
T Consensus       412 sRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlS------------------  473 (1157)
T KOG4278|consen  412 SRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS------------------  473 (1157)
T ss_pred             hhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHH------------------
Confidence            99998887665555   45678888643  3356788888   8899988888776554311                  


Q ss_pred             ccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch
Q psy6542         247 ITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC  299 (334)
Q Consensus       247 ~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~  299 (334)
                             .+...+.+  ..|+..+    .++++.+.++|..||..++.++.+.
T Consensus       474 -------qVY~LLEk--gyRM~~P----eGCPpkVYeLMraCW~WsPsDRPsF  513 (1157)
T KOG4278|consen  474 -------QVYGLLEK--GYRMDGP----EGCPPKVYELMRACWNWSPSDRPSF  513 (1157)
T ss_pred             -------HHHHHHhc--cccccCC----CCCCHHHHHHHHHHhcCCcccCccH
Confidence                   11122222  1223333    6788999999999999887666555

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.92  E-value=9.1e-25  Score=203.87  Aligned_cols=184  Identities=20%  Similarity=0.156  Sum_probs=139.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-CCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-PNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-~~~~~ivmEy   90 (334)
                      +++...||+|.++.+|+.||||.+.+........+.+..|+++++.++|||+        +++++++.. .+..|++|||
T Consensus        20 ~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~~lv~e~   91 (328)
T cd07856          20 MGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENI--------ISLSDIFISPLEDIYFVTEL   91 (328)
T ss_pred             ccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCe--------eeEeeeEecCCCcEEEEeeh
Confidence            4667799999999999999999987654433345667789999999999999        999999875 5678999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +.+++..+....  .+   .......++.|++.||.|||+.+                ++||||+|+||++++++.++|+
T Consensus        92 ~~~~L~~~~~~~--~~---~~~~~~~~~~ql~~aL~~LH~~~----------------iiH~dl~p~Nili~~~~~~~l~  150 (328)
T cd07856          92 LGTDLHRLLTSR--PL---EKQFIQYFLYQILRGLKYVHSAG----------------VVHRDLKPSNILINENCDLKIC  150 (328)
T ss_pred             hccCHHHHHhcC--CC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCHHHEeECCCCCEEeC
Confidence            987754443321  22   33344456779999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||++...... .....++..|++||....   ....+|+|+   ++|+++ ++.+||.+..
T Consensus       151 dfg~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~-tg~~~f~~~~  210 (328)
T cd07856         151 DFGLARIQDPQ-MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEML-EGKPLFPGKD  210 (328)
T ss_pred             ccccccccCCC-cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHH-hCCCCCCCCC
Confidence            99999865432 233456778999997432   244566666   455554 5666775543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=5e-24  Score=190.05  Aligned_cols=184  Identities=17%  Similarity=0.129  Sum_probs=144.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||++.+..+++.||+|.+............+.+|+++++.++|+|+        +++++++.+++.+|++|||+
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~v~e~~   81 (254)
T cd06627          10 RGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNI--------VKYIGSIETSDSLYIILEYA   81 (254)
T ss_pred             ccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCc--------cEEEEEEEeCCEEEEEEecC
Confidence            4677899999999999999999998776544455678899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+....    ........+.++.|++.||.|||+.+                ++||||||+||+++.++.++|+
T Consensus        82 ~~~~L~~~~~~~----~~l~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dl~p~ni~i~~~~~~~l~  141 (254)
T cd06627          82 ENGSLRQIIKKF----GPFPESLVAVYVYQVLQGLAYLHEQG----------------VIHRDIKAANILTTKDGVVKLA  141 (254)
T ss_pred             CCCcHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHhhCC----------------cccCCCCHHHEEECCCCCEEEe
Confidence            987 43332222    22355556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC--CccccCcccccccccccc-C-Ccceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP--HASVESDCILHGYIKKLG-G-PFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~~--~~~~~t~~~~~~~v~~~~-~-~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++........  ....++..|++||..... . ..+|+|+   ++|+++ .+..||..
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~-~g~~p~~~  201 (254)
T cd06627         142 DFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELL-TGNPPYYD  201 (254)
T ss_pred             ccccceecCCCcccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHH-hCCCCCCC
Confidence            9999987655443  334568889999974322 3 3455555   556655 45566543

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.92  E-value=6.7e-25  Score=205.97  Aligned_cols=184  Identities=16%  Similarity=0.148  Sum_probs=140.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC------eEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN------SHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~------~~~   85 (334)
                      .+....||++.+..+|..||||.+..........+.+.+|+++++.++||||        +++++++..+.      .++
T Consensus        25 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~~~   96 (343)
T cd07880          25 SGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENV--------IGLLDVFTPDLSLDRFHDFY   96 (343)
T ss_pred             ecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCc--------cceeeeecCCccccccceEE
Confidence            4566789999999999999999997654444455677889999999999999        99999987553      469


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||||+.+.+..+....  .+   ....+..++.|++.||.|||+.+                |+||||||+||++++++
T Consensus        97 lv~e~~~~~l~~~~~~~--~l---~~~~~~~i~~qi~~al~~LH~~g----------------i~H~dlkp~Nill~~~~  155 (343)
T cd07880          97 LVMPFMGTDLGKLMKHE--KL---SEDRIQFLVYQMLKGLKYIHAAG----------------IIHRDLKPGNLAVNEDC  155 (343)
T ss_pred             EEEecCCCCHHHHHhcC--CC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEEcCCC
Confidence            99999966654443321  22   44556677889999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .++|+|||++...... .....++..|++||+...   .+..+|.|+   ++|++ ..+.+||.+..
T Consensus       156 ~~kl~dfg~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l-~~g~~pf~~~~  220 (343)
T cd07880         156 ELKILDFGLARQTDSE-MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEM-LTGKPLFKGHD  220 (343)
T ss_pred             CEEEeecccccccccC-ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHH-HhCCCCCCCCC
Confidence            9999999999865443 233456788999997432   234566666   45555 45666776544

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.92  E-value=7.8e-25  Score=204.43  Aligned_cols=186  Identities=20%  Similarity=0.180  Sum_probs=138.5

Q ss_pred             CCCceEEEeceeCCC--CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeec----CCeE
Q psy6542          12 RVSKWRVKPPSLKPL--GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSE----PNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~--~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~----~~~~   84 (334)
                      +++...||++.+..+  +..||||.+..........+.+.+|+++++.+ +||||        +++++....    ...+
T Consensus        10 ~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i--------v~~~~~~~~~~~~~~~~   81 (332)
T cd07857          10 QGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNI--------TCLYDMDIVFPGNFNEL   81 (332)
T ss_pred             ccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCh--------heeeeeeeeccccCCcE
Confidence            466789999999988  99999999886444333456677899999999 59999        999886542    2468


Q ss_pred             EEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          85 YIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        85 ~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      |++|||+++++....... ..+   ....+..++.|++.||.|||+.+                ++||||||+||+++++
T Consensus        82 ~~~~e~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~aL~~LH~~g----------------ivH~dlkp~Nili~~~  141 (332)
T cd07857          82 YLYEELMEADLHQIIRSG-QPL---TDAHFQSFIYQILCGLKYIHSAN----------------VLHRDLKPGNLLVNAD  141 (332)
T ss_pred             EEEEecccCCHHHHHhcC-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCHHHeEEcCC
Confidence            999999998854443321 122   44555677789999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCC------CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKK------PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~------~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.+||+|||+++......      .....|+..|++||+..  .. ...+|+|+   ++|+++ ++.+||.+.+
T Consensus       142 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~-~g~~pf~~~~  214 (332)
T cd07857         142 CELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELL-GRKPVFKGKD  214 (332)
T ss_pred             CCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHH-hCCcCCCCCC
Confidence            999999999998654322      12346788899999743  22 34556666   555554 5666776544

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.92  E-value=4.2e-24  Score=195.31  Aligned_cols=184  Identities=17%  Similarity=0.213  Sum_probs=137.8

Q ss_pred             CCCceEEEeceeC---CCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLK---PLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~---~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      .++...||+|.+.   .+|..||+|+++....  .....+.+.+|+++++.+ +|+||        +.+++.+..++.+|
T Consensus        10 ~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i--------~~~~~~~~~~~~~~   81 (290)
T cd05613          10 TGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFL--------VTLHYAFQTDTKLH   81 (290)
T ss_pred             cCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCCh--------hceeeEeecCCeEE
Confidence            3455678877764   5899999999986443  223445677899999999 58999        99999999999999


Q ss_pred             EEEEccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          86 IIGVRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        86 ivmEy~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +||||++|+ + +++...  ..+   ....+..++.|++.||.|||+.+                ++||||||+|||++.
T Consensus        82 lv~e~~~~~~L~~~l~~~--~~l---~~~~~~~~~~qi~~al~~lH~~~----------------i~H~dl~p~nil~~~  140 (290)
T cd05613          82 LILDYINGGELFTHLSQR--ERF---KEQEVQIYSGEIVLALEHLHKLG----------------IIYRDIKLENILLDS  140 (290)
T ss_pred             EEEecCCCCcHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeccCCCHHHeEECC
Confidence            999999988 3 333222  122   34555666779999999999999                999999999999999


Q ss_pred             CCCEEEEecccccccCCCC---CCccccCccccccccccc---c-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         164 HGHVRISDLGLACDFSKKK---PHASVESDCILHGYIKKL---G-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~~---~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ++.+||+|||++.......   .....|+..|++||....   . ....|+|+   ++|+++ .+..||...
T Consensus       141 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll-~g~~p~~~~  211 (290)
T cd05613         141 NGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELL-TGASPFTVD  211 (290)
T ss_pred             CCCEEEeeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHh-cCCCCCCcC
Confidence            9999999999998664432   223457888999998532   2 34566666   556665 466676543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.92  E-value=2.5e-24  Score=198.39  Aligned_cols=186  Identities=14%  Similarity=0.062  Sum_probs=136.8

Q ss_pred             CCCCceEEEeceeCCCCCc----EEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFP----IQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~----vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      .+++...||++.+..+|..    ||+|.+...... .....+.+|+.+++.++||||        +++++++..+ ..++
T Consensus        16 g~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~~~~l~h~ni--------v~~~~~~~~~-~~~~   85 (303)
T cd05110          16 GSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGP-KANVEFMDEALIMASMDHPHL--------VRLLGVCLSP-TIQL   85 (303)
T ss_pred             ccCCCccEEEEEEecCCCcceeeEEEEeccccCCH-HHHHHHHHHHHHHHhCCCCCc--------ccEEEEEcCC-Ccee
Confidence            3566779999999888874    688888754432 233457789999999999999        9999988754 4678


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      ++||+.+| +..........   .....++.++.|++.||.|||+++                |+||||||+||++++++
T Consensus        86 v~e~~~~g~l~~~~~~~~~~---~~~~~~~~~~~qi~~~L~~LH~~~----------------ivH~dikp~Nill~~~~  146 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHKDN---IGSQLLLNWCVQIAKGMMYLEERR----------------LVHRDLAARNVLVKSPN  146 (303)
T ss_pred             eehhcCCCCHHHHHHhcccC---CCHHHHHHHHHHHHHHHHHHhhcC----------------eeccccccceeeecCCC
Confidence            99999887 43322221111   244556777889999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCC----CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKP----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      .+||+|||+++.......    ....++..|++||+..  .....+|+|+   ++|+++..+..||.+.
T Consensus       147 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~  215 (303)
T cd05110         147 HVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGI  215 (303)
T ss_pred             ceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999986654322    1223356788888743  2244677777   6778777666676443

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.92  E-value=4.8e-24  Score=192.53  Aligned_cols=187  Identities=19%  Similarity=0.118  Sum_probs=138.6

Q ss_pred             CCCceEEEeceeCC-CCCcEEEEEeeCCCc--------chHHhhhHHHHHHHHHh-cCCCCcccccccceeeEEEEeecC
Q psy6542          12 RVSKWRVKPPSLKP-LGFPIQIGMLRHRPH--------ESRVAKWRPYIQEIFNH-LRNEPFKKCVLLFKMNLYKVTSEP   81 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-~~~~vAIK~l~~~~~--------~~~~~~~~~~E~~il~~-l~h~~i~~~~~~~~v~~~~~~~~~   81 (334)
                      .+....||++.++. +++.+|+|.+.....        .......+.+|+.++.+ ++|+|+        +++++++.++
T Consensus        10 ~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i--------~~~~~~~~~~   81 (269)
T cd08528          10 SGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNI--------VRYYKTFLEN   81 (269)
T ss_pred             CCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCe--------eeEEeeEccC
Confidence            45677999999988 789999999875321        22233456678887765 899999        9999999999


Q ss_pred             CeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          82 NSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        82 ~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                      +.+|++|||++|+ +..+................+.++.|++.||.|||+ .+                ++|+||||+||
T Consensus        82 ~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~----------------i~H~dl~~~ni  145 (269)
T cd08528          82 DRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKR----------------IVHRDLTPNNI  145 (269)
T ss_pred             CeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCc----------------eeecCCCHHHE
Confidence            9999999999987 433322211111223455667788899999999996 67                99999999999


Q ss_pred             eeCCCCCEEEEecccccccCCCC-CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         160 LLDEHGHVRISDLGLACDFSKKK-PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       160 Ll~~~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      ++++++.++|+|||++....... .....++..|++||+...  ..+.+|+|+   ++|+++. +.+||.
T Consensus       146 l~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~-g~~p~~  214 (269)
T cd08528         146 MLGEDDKVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCT-LQPPFY  214 (269)
T ss_pred             EECCCCcEEEecccceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHh-CCCccc
Confidence            99999999999999998665543 234457888999998532  245677777   5666655 466654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.92  E-value=2.2e-24  Score=200.99  Aligned_cols=189  Identities=13%  Similarity=0.079  Sum_probs=140.9

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++...||+|.+..+|+.||||++..........+.+.+|+.+++.++||||        +++++++..++.+|+||||
T Consensus         9 g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~ni--------v~~~~~~~~~~~~~~v~e~   80 (328)
T cd08226           9 GFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNI--------MTSWTVFTTGSWLWVISPF   80 (328)
T ss_pred             cccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCc--------ceEeeeEecCCceEEEEec
Confidence            45677799999999999999999998765544455688899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.++ +..+......  .......+..++.|++.||.|||+++                ++||||||+||++++++.+++
T Consensus        81 ~~~~~l~~~l~~~~~--~~~~~~~~~~~~~qi~~aL~~lH~~~----------------ivHrDlkp~Nill~~~~~~~~  142 (328)
T cd08226          81 MAYGSANSLLKTYFP--EGMSEALIGNILFGALRGLNYLHQNG----------------YIHRNIKASHILISGDGLVSL  142 (328)
T ss_pred             ccCCCHHHHHHhhcc--cCCCHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEEeCCCcEEE
Confidence            9987 4333232111  11245555677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC---------CCccccCccccccccccc---c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK---------PHASVESDCILHGYIKKL---G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~---------~~~~~~t~~~~~~~v~~~---~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||.+.......         .....++..|++||+...   + ...+|+|+   ++|++ +.+.+||....
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el-~~g~~p~~~~~  214 (328)
T cd08226         143 SGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACEL-ATGRVPFQDML  214 (328)
T ss_pred             echHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHH-HhCCCCCCCcC
Confidence            9998654332211         111223456889998532   2 34566666   55555 45666775543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.92  E-value=6.6e-24  Score=193.93  Aligned_cols=181  Identities=17%  Similarity=0.187  Sum_probs=140.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||++.+..+++.||||.+......  ..+.+.+|+.+++.++|||+        +++++++..++..|+++||+
T Consensus        29 ~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~e~~~l~~~~h~~v--------v~~~~~~~~~~~~~~v~e~~   98 (285)
T cd06648          29 EGSTGIVCIATDKSTGRQVAVKKMDLRKQQ--RRELLFNEVVIMRDYQHPNI--------VEMYSSYLVGDELWVVMEFL   98 (285)
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEeccchh--HHHHHHHHHHHHHHcCCCCh--------heEEEEEEcCCeEEEEEecc
Confidence            467789999999999999999998754332  23457789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +..+...  ..+   .......++.|++.||.|||+++                ++||||+|+||+++.++.++|+
T Consensus        99 ~~~~L~~~~~~--~~~---~~~~~~~~~~ql~~~l~~lH~~~----------------i~H~dl~p~Nil~~~~~~~~l~  157 (285)
T cd06648          99 EGGALTDIVTH--TRM---NEEQIATVCLAVLKALSFLHAQG----------------VIHRDIKSDSILLTSDGRVKLS  157 (285)
T ss_pred             CCCCHHHHHHh--CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCChhhEEEcCCCcEEEc
Confidence            887 5443332  122   44455677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC--CccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP--HASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~~--~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++........  ....|++.|++||+... . ...+|+|+   ++|+++. +..||..
T Consensus       158 d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~-g~~p~~~  217 (285)
T cd06648         158 DFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVD-GEPPYFN  217 (285)
T ss_pred             ccccchhhccCCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHh-CCCCCcC
Confidence            9999876544322  23457889999998532 2 34566666   6666655 5556644

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.92  E-value=2.9e-24  Score=195.25  Aligned_cols=189  Identities=9%  Similarity=0.024  Sum_probs=139.6

Q ss_pred             CCCceEEEeceeCC----CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-CCeEEE
Q psy6542          12 RVSKWRVKPPSLKP----LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-PNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~----~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-~~~~~i   86 (334)
                      +++.+.||+|.+..    ++..||+|.++.... ......+.+|+.+++.++|+|+        +++++++.. +...++
T Consensus        16 ~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni--------~~~~~~~~~~~~~~~~   86 (280)
T cd05043          16 EGTFGRIFYGILIDEKPGKEEEVFVKTVKDHAS-EIQVTLLLQESCLLYGLSHQNI--------LPILHVCIEDGEPPFV   86 (280)
T ss_pred             ccCCceEEEEEEecCCCCceeEEEEEEccCCCC-HHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEecCCCCCEE
Confidence            56777999999876    468899999875433 3334567889999999999999        999998765 577899


Q ss_pred             EEEccCCC-hh-HHhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          87 IGVRQSGP-KD-QISRSKINR---YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        87 vmEy~~g~-l~-~l~~~~~~~---~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      ++||+.++ +. ++.......   .........+.++.|++.||.|||+.+                ++||||||+||++
T Consensus        87 ~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~----------------i~H~di~p~nil~  150 (280)
T cd05043          87 LYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRG----------------VIHKDIAARNCVI  150 (280)
T ss_pred             EEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC----------------EeecccCHhhEEE
Confidence            99999877 43 332221110   022355666778889999999999999                9999999999999


Q ss_pred             CCCCCEEEEecccccccCCCCC----CccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         162 DEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       162 ~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ++++.+||+|||+++.+..+..    ....++..|++||+.. . ....+|+|+   ++|+++..+.+||...
T Consensus       151 ~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  223 (280)
T cd05043         151 DEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEI  223 (280)
T ss_pred             cCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcC
Confidence            9999999999999986644321    1223456689999742 2 244667777   6677766577777543

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.92  E-value=3.1e-24  Score=190.84  Aligned_cols=170  Identities=14%  Similarity=0.090  Sum_probs=130.1

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      +...+||++.++.+|+.||+|.++....       ..+|...+....|||+        +++++++.+++.+|+||||+.
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~-------~~~~~~~~~~~~~~~i--------~~~~~~~~~~~~~~lv~e~~~   68 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSE-------YSRERLTIIPHCVPNM--------VCLHKYIVSEDSVFLVLQHAE   68 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhh-------hhhHHHHHHhcCCCce--------eehhhheecCCeEEEEEecCC
Confidence            6678999999999999999999986432       2235555566779999        999999999999999999999


Q ss_pred             CC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          93 GP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        93 g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      |+ +....... ..   .....+..++.|++.||.|||+++                ++||||||+||+++.++.++++|
T Consensus        69 ~~~L~~~l~~~-~~---l~~~~~~~~~~ql~~~l~~lH~~~----------------i~H~dlkp~Nil~~~~~~~~l~d  128 (237)
T cd05576          69 GGKLWSHISKF-LN---IPEECVKRWAAEMVVALDALHREG----------------IVCRDLNPNNILLDDRGHIQLTY  128 (237)
T ss_pred             CCCHHHHHHHh-cC---CCHHHHHHHHHHHHHHHHHHHhCC----------------eeccCCCHHHEEEcCCCCEEEec
Confidence            88 43332222 12   245556777889999999999999                99999999999999999999999


Q ss_pred             cccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCC
Q psy6542         172 LGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPN  218 (334)
Q Consensus       172 FGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~  218 (334)
                      ||++....... ....++..|++||... .. +..+|.|+   ++|+++.+.
T Consensus       129 f~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~  179 (237)
T cd05576         129 FSRWSEVEDSC-DGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGK  179 (237)
T ss_pred             ccchhcccccc-ccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCc
Confidence            99987665432 2334566789999743 22 34566666   667766644

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.92  E-value=6e-24  Score=195.05  Aligned_cols=184  Identities=15%  Similarity=0.144  Sum_probs=137.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .++.+.||+|.+..+++.||||.++...... ..+.+..|+.++.+.. |+||        +++++++.++..+|++|||
T Consensus        25 ~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~i--------~~~~~~~~~~~~~~~v~e~   95 (296)
T cd06618          25 SGTCGQVYKMRFKKTGHVMAVKQMRRTGNKE-ENKRILMDLDVVLKSHDCPYI--------VKCYGYFITDSDVFICMEL   95 (296)
T ss_pred             ccCCeEEEEEEECCCCeEEEEEEEeccCChH-HHHHHHHHHHHHHhccCCCch--------HhhheeeecCCeEEEEeec
Confidence            4677899999999999999999998654432 2334555777666664 9999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.+.+..+.......+   .......++.|++.||.|||+ .+                |+||||+|+||++++++.+||
T Consensus        96 ~~~~l~~l~~~~~~~l---~~~~~~~i~~~i~~~l~~lH~~~~----------------i~H~dl~p~nill~~~~~~kL  156 (296)
T cd06618          96 MSTCLDKLLKRIQGPI---PEDILGKMTVAIVKALHYLKEKHG----------------VIHRDVKPSNILLDASGNVKL  156 (296)
T ss_pred             cCcCHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHhhCC----------------EecCCCcHHHEEEcCCCCEEE
Confidence            9887555544322222   444556778899999999997 57                999999999999999999999


Q ss_pred             EecccccccCCCCC-CccccCccccccccccc------cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP-HASVESDCILHGYIKKL------GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       170 ~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~------~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|||++..+..... ....++..|++||....      ....+|+|+   ++|+++. +..||..
T Consensus       157 ~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~  220 (296)
T cd06618         157 CDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELAT-GQFPYKN  220 (296)
T ss_pred             CccccchhccCCCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHh-CCCCCCc
Confidence            99999986654432 22346778899997432      234566666   5666655 6667643

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=7e-24  Score=191.20  Aligned_cols=184  Identities=19%  Similarity=0.210  Sum_probs=137.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~i   86 (334)
                      .++...||+|.+..+|+.||+|.+.....   .......+.+|++++++++|+||        +++++.+.+.  +.+++
T Consensus        12 ~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i--------~~~~~~~~~~~~~~~~~   83 (264)
T cd06653          12 RGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRI--------VQYYGCLRDPEEKKLSI   83 (264)
T ss_pred             cCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCc--------ceEEEEEEcCCCCEEEE
Confidence            46677999999999999999999864322   23344578889999999999999        9999988754  56899


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +|||+.|+ +....... ..+   .......++.|++.||.|||+.+                ++|+||||+||+++.++
T Consensus        84 v~e~~~~~~L~~~~~~~-~~l---~~~~~~~~~~~i~~al~~LH~~~----------------i~H~dl~p~ni~i~~~~  143 (264)
T cd06653          84 FVEYMPGGSIKDQLKAY-GAL---TENVTRRYTRQILQGVSYLHSNM----------------IVHRDIKGANILRDSAG  143 (264)
T ss_pred             EEEeCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EecCCCCHHHEEEcCCC
Confidence            99999887 43332221 122   34455677789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCC-----CCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKK-----PHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .++|+|||+++......     .....++..|++||+... . ...+|.|+   ++|+++ .+..||..
T Consensus       144 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~-~g~~p~~~  211 (264)
T cd06653         144 NVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEML-TEKPPWAE  211 (264)
T ss_pred             CEEECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHH-hCCCCCCc
Confidence            99999999998653321     123457788999997432 2 34455565   555555 46667643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.92  E-value=1.1e-23  Score=191.38  Aligned_cols=251  Identities=16%  Similarity=0.068  Sum_probs=161.9

Q ss_pred             CCCceEEEeceeC----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--CCeEE
Q psy6542          12 RVSKWRVKPPSLK----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--PNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--~~~~~   85 (334)
                      +++...||++...    .+++.||||.++..... ...+.+.+|+++++.++|+||        +++++++..  +...+
T Consensus        14 ~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~ei~~l~~l~~~~i--------~~~~~~~~~~~~~~~~   84 (284)
T cd05038          14 EGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE-QHRSDFEREIEILRTLDHENI--------VKYKGVCEKPGGRSLR   84 (284)
T ss_pred             cCCCeeEEEeeecCCCCCCceEEEEEEeccccch-HHHHHHHHHHHHHHhCCCCCh--------heEEeeeecCCCCceE
Confidence            4667799999854    45899999999865543 345678899999999999999        999998876  56799


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      ++|||++++ ++.+......   .......+.++.|++.||.|||+.+                ++||||||+||+++.+
T Consensus        85 lv~e~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~l~~aL~~lH~~~----------------i~H~dl~p~nil~~~~  145 (284)
T cd05038          85 LIMEYLPSGSLRDYLQRHRD---QINLKRLLLFSSQICKGMDYLGSQR----------------YIHRDLAARNILVESE  145 (284)
T ss_pred             EEEecCCCCCHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHhEEEcCC
Confidence            999999887 4333232211   2345556677889999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCCC-----ccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         165 GHVRISDLGLACDFSKKKPH-----ASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~~-----~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      +.++|+|||++.........     ...++..|++|+... .. ...+|+|+   ++|+++ .+..|+....... .. +
T Consensus       146 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~-tg~~p~~~~~~~~-~~-~  222 (284)
T cd05038         146 DLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELF-TYGDPSQSPPAEF-LR-M  222 (284)
T ss_pred             CCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheee-ccCCCcccccchh-cc-c
Confidence            99999999999876533211     122344577788632 23 33556666   455554 4445543322110 00 0


Q ss_pred             hcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         235 FMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                      ...     ..+..   ....+...+..+.  +..    .....+..+..  +..+|...+|..|+ +.++++.+.+
T Consensus       223 ~~~-----~~~~~---~~~~~~~~~~~~~--~~~----~~~~~~~~~~~--li~~cl~~~p~~Rpt~~ei~~~l~~  282 (284)
T cd05038         223 IGI-----AQGQM---IVTRLLELLKEGE--RLP----RPPSCPDEVYD--LMKLCWEAEPQDRPSFADLILIVDR  282 (284)
T ss_pred             ccc-----ccccc---cHHHHHHHHHcCC--cCC----CCccCCHHHHH--HHHHHhccChhhCCCHHHHHHHHhh
Confidence            000     00100   0111222221111  111    11223334444  77888888999999 8888877754

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.92  E-value=3.8e-24  Score=196.38  Aligned_cols=182  Identities=18%  Similarity=0.204  Sum_probs=141.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||++..+.+|+.||||.+.....  .....+.+|+.+++.++|+|+        +++++.+..++..|+||||+
T Consensus        30 ~g~~g~v~~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~   99 (292)
T cd06657          30 EGSTGIVCIATVKSSGKLVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENV--------VEMYNSYLVGDELWVVMEFL   99 (292)
T ss_pred             CCCCeEEEEEEEcCCCeEEEEEEecccch--hHHHHHHHHHHHHHhcCCcch--------hheeeEEEeCCEEEEEEecC
Confidence            46668999999999999999999864332  234567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +++ +..+....  .+   .......++.|++.||.|||+.+                ++|+||||+||+++.++.++|+
T Consensus       100 ~~~~L~~~~~~~--~~---~~~~~~~~~~ql~~~l~~lH~~g----------------ivH~dl~p~Nilv~~~~~~~l~  158 (292)
T cd06657         100 EGGALTDIVTHT--RM---NEEQIAAVCLAVLKALSVLHAQG----------------VIHRDIKSDSILLTHDGRVKLS  158 (292)
T ss_pred             CCCcHHHHHhcC--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEECCCCCEEEc
Confidence            998 54443221  22   34455677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++.......  .....++..|++||...  ..+..+|.|+   ++|++ ..+.+||.+.
T Consensus       159 dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el-~tg~~p~~~~  219 (292)
T cd06657         159 DFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEM-VDGEPPYFNE  219 (292)
T ss_pred             ccccceecccccccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHH-HhCCCCCCCC
Confidence            999987654432  22345778899999743  2244567777   55555 4566676543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG0984|consensus

Probab=99.92  E-value=3.7e-25  Score=185.62  Aligned_cols=186  Identities=16%  Similarity=0.156  Sum_probs=145.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHh-cCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNH-LRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~-l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      |+.-+.|-+.++..+|+..|+|.++..-... ..+++..|+.+... ...|.+        |.||+.+.....+||.||.
T Consensus        56 rGayG~vekmrh~~sg~imAvKri~~tvn~q-~q~r~L~dldi~~r~~~CPf~--------V~FyGa~~regdvwIcME~  126 (282)
T KOG0984|consen   56 RGAYGVVEKMRHIQSGTIMAVKRIRATVNSQ-EQKRLLMDLDIIMRTVDCPFT--------VHFYGALFREGDVWICMEL  126 (282)
T ss_pred             CCccchhhheeeccCCeEEEEeeehhhcChH-HHHHHHHhhhhhccCCCCCeE--------EEeehhhhccccEEEeHHH
Confidence            4555688888999999999999999765533 44566678887544 467777        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      |+.++|.+...-...-.-.++..+-.|+..+..||.|||++-+               +||||+||+|||+|.+|+||+|
T Consensus       127 M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~---------------vIHRDvKPsNiLIn~~GqVKiC  191 (282)
T KOG0984|consen  127 MDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLS---------------VIHRDVKPSNILINYDGQVKIC  191 (282)
T ss_pred             hhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhh---------------hhhccCCcceEEEccCCcEEEc
Confidence            9999877766655444444666677889999999999999863               9999999999999999999999


Q ss_pred             ecccccccCCCCCCc-cccCcccccccc-----ccccCC-cceeeh---hHHHHHcCCCCCC
Q psy6542         171 DLGLACDFSKKKPHA-SVESDCILHGYI-----KKLGGP-FVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       171 DFGla~~~~~~~~~~-~~~t~~~~~~~v-----~~~~~~-~~~~w~---~~~~~l~~~~~~~  222 (334)
                      |||++-.+.++...+ ..|...||+||.     ...+|. ++|+||   +++|+ +..+.|+
T Consensus       192 DFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiEl-A~lr~PY  252 (282)
T KOG0984|consen  192 DFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEM-AILRFPY  252 (282)
T ss_pred             ccccceeehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhh-hhccccc
Confidence            999998877776555 567778999986     233444 777788   44454 5556564

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.92  E-value=4.9e-25  Score=206.84  Aligned_cols=185  Identities=19%  Similarity=0.177  Sum_probs=141.1

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCe------E
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNS------H   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~------~   84 (334)
                      ..++.+.||+|.+..+++.||||.+..........+.+.+|+.+++.++|+|+        +++++++..++.      +
T Consensus        24 g~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~~   95 (343)
T cd07851          24 GSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENV--------IGLLDVFTPASSLEDFQDV   95 (343)
T ss_pred             ccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCH--------HHHHHHhhccccccccccE
Confidence            35677899999999999999999987654433344567789999999999999        888887765544      8


Q ss_pred             EEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          85 YIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        85 ~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      |+||||+.+.+..+...  ..+   ....+..++.|++.||.|||+.+                ++||||||+||+++++
T Consensus        96 ~lv~e~~~~~L~~~~~~--~~l---~~~~~~~~~~ql~~aL~~LH~~g----------------i~H~dlkp~Nill~~~  154 (343)
T cd07851          96 YLVTHLMGADLNNIVKC--QKL---SDDHIQFLVYQILRGLKYIHSAG----------------IIHRDLKPSNIAVNED  154 (343)
T ss_pred             EEEEecCCCCHHHHHhc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHeEECCC
Confidence            99999997775443332  123   44455677789999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCCCccccCcccccccccc---ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKKPHASVESDCILHGYIKK---LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~---~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.++|+|||++...... .....++..|++||+..   ..+..+|+|+   ++|+++ ++..||.+..
T Consensus       155 ~~~kL~dfg~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~ell-tg~~pf~~~~  220 (343)
T cd07851         155 CELKILDFGLARHTDDE-MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL-TGKTLFPGSD  220 (343)
T ss_pred             CCEEEcccccccccccc-ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHH-hCCCCCCCCC
Confidence            99999999999876543 33345678899999743   2244566676   555554 4566775543

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.92  E-value=1.4e-23  Score=191.50  Aligned_cols=182  Identities=18%  Similarity=0.205  Sum_probs=140.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||++.+..++..||+|++.....   ..+.+.+|+++++.++|+|+        +++++.+..++..|++|||+
T Consensus        29 ~g~~~~v~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~lv~e~~   97 (286)
T cd06614          29 EGASGEVYKATDRATGKEVAIKKMRLRKQ---NKELIINEILIMKDCKHPNI--------VDYYDSYLVGDELWVVMEYM   97 (286)
T ss_pred             CCCCeEEEEEEEccCCcEEEEEEEecCch---hHHHHHHHHHHHHHCCCCCe--------eEEEEEEEECCEEEEEEecc
Confidence            45678999999999999999999986543   34567789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+......   .......+.++.|++.||.|||+.+                ++|+||+|+||+++.++.++|+
T Consensus        98 ~~~~L~~~l~~~~~---~l~~~~~~~i~~~i~~~L~~lH~~g----------------i~H~dl~p~ni~i~~~~~~~l~  158 (286)
T cd06614          98 DGGSLTDIITQNFV---RMNEPQIAYVCREVLQGLEYLHSQN----------------VIHRDIKSDNILLSKDGSVKLA  158 (286)
T ss_pred             CCCcHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHhCC----------------eeeCCCChhhEEEcCCCCEEEC
Confidence            977 5444333211   2244556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++.......  .....++..|++||+..  .....+|+|+   ++|+++ ++..||..
T Consensus       159 d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~-~g~~p~~~  218 (286)
T cd06614         159 DFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMA-EGEPPYLR  218 (286)
T ss_pred             ccchhhhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHH-hCCCCCCC
Confidence            999987654432  12334677899999742  2245667777   555554 55656543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.92  E-value=9.4e-25  Score=198.09  Aligned_cols=187  Identities=18%  Similarity=0.161  Sum_probs=144.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      ++....||+|.+..+++.||+|.+..........+.+..|+++++.++|+|+        +++++++.+.+.+++||||+
T Consensus         9 ~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           9 EGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNI--------VKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             ccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCH--------HHHHhhhhcCCceEEEecCc
Confidence            4567899999999999999999998765444445667789999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      ++++..+......   .........++.|++.||.|||+.+                ++||||+|+||++++++.++|+|
T Consensus        81 ~~~l~~~i~~~~~---~~~~~~~~~~~~~i~~~l~~LH~~~----------------i~H~~l~~~ni~~~~~~~~~l~d  141 (282)
T cd07829          81 DMDLKKYLDKRPG---PLSPNLIKSIMYQLLRGLAYCHSHR----------------ILHRDLKPQNILINRDGVLKLAD  141 (282)
T ss_pred             CcCHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCChheEEEcCCCCEEEec
Confidence            9885443333211   2345566677789999999999999                99999999999999999999999


Q ss_pred             cccccccCCCCC--CccccCcccccccccc---ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         172 LGLACDFSKKKP--HASVESDCILHGYIKK---LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       172 FGla~~~~~~~~--~~~~~t~~~~~~~v~~---~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ||+++.......  ....++..|++||+..   .....+|+|+   ++|+++. +.+||.+..
T Consensus       142 ~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~-~~~~~~~~~  203 (282)
T cd07829         142 FGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMIT-GKPLFPGDS  203 (282)
T ss_pred             CCcccccCCCccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHh-CCCCCCCcc
Confidence            999987654432  2233467789999742   2344566666   5556555 466775544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0603|consensus

Probab=99.91  E-value=2.7e-24  Score=205.96  Aligned_cols=217  Identities=17%  Similarity=0.137  Sum_probs=159.7

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHh-cCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNH-LRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~-l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|.--|..+.+..+++..|+|++.+...      ...+|+.++.. -+||||        +++++++.++...|+|||++
T Consensus       333 gs~s~~~~~~~~~t~~~~~vkii~~~~~------~~~~e~~~~~~~~~h~ni--------v~~~~v~~~~~~~~~v~e~l  398 (612)
T KOG0603|consen  333 GSFSAVKYCESSPTDQEPAVKIISKRAD------DNQDEIPISLLVRDHPNI--------VKSHDVYEDGKEIYLVMELL  398 (612)
T ss_pred             CCccceeeeeccccccchhheecccccc------ccccccchhhhhcCCCcc--------eeecceecCCceeeeeehhc
Confidence            3445677899999999999999997632      22346655555 479999        99999999999999999999


Q ss_pred             CCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee-CCCCCEE
Q psy6542          92 SGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL-DEHGHVR  168 (334)
Q Consensus        92 ~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl-~~~~~vk  168 (334)
                      .|+  ++.+....  .    .......|+.||+.|+.|||+++                ++||||||+|||+ ++.++++
T Consensus       399 ~g~ell~ri~~~~--~----~~~e~~~w~~~lv~Av~~LH~~g----------------vvhRDLkp~NIL~~~~~g~lr  456 (612)
T KOG0603|consen  399 DGGELLRRIRSKP--E----FCSEASQWAAELVSAVDYLHEQG----------------VVHRDLKPGNILLDGSAGHLR  456 (612)
T ss_pred             cccHHHHHHHhcc--h----hHHHHHHHHHHHHHHHHHHHhcC----------------eeecCCChhheeecCCCCcEE
Confidence            999  44443322  1    22445578889999999999999                9999999999999 6899999


Q ss_pred             EEecccccccCCCCCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         169 ISDLGLACDFSKKKPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      |+|||.++..... ..+.+=|..|.+||+. ..+|+.+.|||    ++|+||+ |.+||......  .++........+.
T Consensus       457 ltyFG~a~~~~~~-~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~-G~tp~~~~P~~--~ei~~~i~~~~~s  532 (612)
T KOG0603|consen  457 LTYFGFWSELERS-CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLT-GRTLFAAHPAG--IEIHTRIQMPKFS  532 (612)
T ss_pred             EEEechhhhCchh-hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHh-CCCccccCCch--HHHHHhhcCCccc
Confidence            9999999987776 3333456778899984 56799999999    5566655 55577666544  1222111221111


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                       .......++.+...+..||..|++..
T Consensus       533 -~~vS~~AKdLl~~LL~~dP~~Rl~~~  558 (612)
T KOG0603|consen  533 -ECVSDEAKDLLQQLLQVDPALRLGAD  558 (612)
T ss_pred             -cccCHHHHHHHHHhccCChhhCcChh
Confidence             22223567788888888999999865

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.91  E-value=1.1e-23  Score=190.77  Aligned_cols=177  Identities=14%  Similarity=0.120  Sum_probs=132.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHh-cCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNH-LRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~-l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      ..++...||++.++.+|..+|+|.+.......       .|+.+... .+|||+        +++++.+..++.+|+|||
T Consensus        25 g~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~-------~e~~~~~~~~~h~~i--------v~~~~~~~~~~~~~iv~e   89 (267)
T PHA03390         25 IDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA-------IEPMVHQLMKDNPNF--------IKLYYSVTTLKGHVLIMD   89 (267)
T ss_pred             cCCCceEEEEEEEcCCCcEEEEEEEehhhcch-------hhHHHHHHhhcCCCE--------EEEEEEEecCCeeEEEEE
Confidence            45677899999999999999999988543211       13333332 279999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-CE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-HV  167 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-~v  167 (334)
                      |++|+ +..+.... ..+   ....+..++.|++.||.|||+.+                ++||||||+||+++.++ .+
T Consensus        90 ~~~~~~L~~~l~~~-~~l---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dl~p~nil~~~~~~~~  149 (267)
T PHA03390         90 YIKDGDLFDLLKKE-GKL---SEAEVKKIIRQLVEALNDLHKHN----------------IIHNDIKLENVLYDRAKDRI  149 (267)
T ss_pred             cCCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeeCCCCHHHEEEeCCCCeE
Confidence            99887 44333322 122   45556677889999999999999                99999999999999998 99


Q ss_pred             EEEecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       168 kl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|+|||+++......  ...++..|++||+.. .. .+.+|+|+   ++|+++. +..||...
T Consensus       150 ~l~dfg~~~~~~~~~--~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~-g~~p~~~~  209 (267)
T PHA03390        150 YLCDYGLCKIIGTPS--CYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLT-GKHPFKED  209 (267)
T ss_pred             EEecCccceecCCCc--cCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHH-CCCCCCCC
Confidence            999999998665432  345788899999853 23 34556666   5566554 56677543

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.91  E-value=6.2e-24  Score=189.32  Aligned_cols=186  Identities=19%  Similarity=0.214  Sum_probs=143.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||++.+..+++.||+|.++.... .......+..|+++++.++|+|+        +++++.+..++.+|+||||
T Consensus         3 ~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~v~e~   74 (250)
T cd05123           3 KGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFI--------VKLHYAFQTEEKLYLVLEY   74 (250)
T ss_pred             CCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcH--------HHHHHHeecCCeeEEEEec
Confidence            46778999999999999999999987654 22234467789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.++ +....... ..   ........++.|++.||.|||+.+                ++|+||+|+||++++++.++|
T Consensus        75 ~~~~~L~~~l~~~-~~---l~~~~~~~~~~qi~~~l~~lh~~~----------------~~H~~l~p~ni~~~~~~~~~l  134 (250)
T cd05123          75 APGGELFSHLSKE-GR---FSEERARFYAAEIVLALEYLHSLG----------------IIYRDLKPENILLDADGHIKL  134 (250)
T ss_pred             CCCCcHHHHHHhc-CC---CCHHHHHHHHHHHHHHHHHHHHCC----------------ceecCCCcceEEEcCCCcEEE
Confidence            9766 43222221 12   245556677789999999999999                999999999999999999999


Q ss_pred             EecccccccCCC--CCCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKK--KPHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~--~~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++......  ......++..|++||....  ....+|.|+   ++|+++. +..||...+
T Consensus       135 ~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~-g~~p~~~~~  197 (250)
T cd05123         135 TDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLT-GKPPFYAED  197 (250)
T ss_pred             eecCcceecccCCCcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHH-CCCCCCCCC
Confidence            999999876553  2344566788999997432  244566666   5566655 666765443

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.91  E-value=1.6e-23  Score=192.26  Aligned_cols=183  Identities=14%  Similarity=0.158  Sum_probs=140.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||++.+..++..||+|.+......  ..+.+.+|+.+++.++|||+        +++++++..++..|+||||+
T Consensus        29 ~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~--~~~~~~~e~~~l~~l~hp~i--------~~~~~~~~~~~~~~lv~e~~   98 (293)
T cd06647          29 QGASGTVYTAIDVATGQEVAIKQMNLQQQP--KKELIINEILVMRENKHPNI--------VNYLDSYLVGDELWVVMEYL   98 (293)
T ss_pred             CCCCeEEEEEEEcCCCCEEEEEEeccccch--HHHHHHHHHHHHhhcCCCCe--------eehhheeeeCCcEEEEEecC
Confidence            466789999999999999999998644332  23567789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+....  .+   ....+..++.|++.||.|||+++                ++||||||+||+++.++.++|+
T Consensus        99 ~~~~L~~~~~~~--~l---~~~~~~~i~~~l~~al~~LH~~g----------------i~H~dL~p~Nili~~~~~~kL~  157 (293)
T cd06647          99 AGGSLTDVVTET--CM---DEGQIAAVCRECLQALEFLHSNQ----------------VIHRDIKSDNILLGMDGSVKLT  157 (293)
T ss_pred             CCCcHHHHHhhc--CC---CHHHHHHHHHHHHHHHHHHHhCC----------------EeeccCCHHHEEEcCCCCEEEc
Confidence            988 43332221  12   33445567789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC--CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP--HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~~--~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||++........  ....++..|++||+.. .. ...+|+|+   ++|+++ .+..||...+
T Consensus       158 dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll-~g~~pf~~~~  219 (293)
T cd06647         158 DFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMV-EGEPPYLNEN  219 (293)
T ss_pred             cCcceecccccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHH-hCCCCCCCCC
Confidence            9999876554432  2345778899999743 22 34566666   555555 5666775544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG0587|consensus

Probab=99.91  E-value=9.5e-24  Score=207.74  Aligned_cols=183  Identities=14%  Similarity=0.148  Sum_probs=143.2

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEee-----cCCeE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTS-----EPNSH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~-----~~~~~   84 (334)
                      ..|.-.+||+++++.+|+.+|||++......+   .....|.+|++.+ .|||+        +.+|++|.     .++.+
T Consensus        28 g~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~d---eEiE~eynil~~~~~hpnv--------~~fyg~~~k~~~~~~DqL   96 (953)
T KOG0587|consen   28 GNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEE---EEIELEYNMLKKYSHHPNV--------ATFYGAFIKKDPGNGDQL   96 (953)
T ss_pred             eeccceeEEEEeeeecCceeeeEeecCCcccc---HHHHHHHHHHHhccCCCCc--------ceEEEEEEEecCCCCCeE
Confidence            34555699999999999999999998876622   2334588888876 58999        99999987     35789


Q ss_pred             EEEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          85 YIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        85 ~ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      |+|||||.||  .|.++.-...+.   .+..++-|+.+++.||.+||.+.                ++|||+|-.|||++
T Consensus        97 WLVMEfC~gGSVTDLVKn~~g~rl---~E~~IaYI~re~lrgl~HLH~nk----------------viHRDikG~NiLLT  157 (953)
T KOG0587|consen   97 WLVMEFCGGGSVTDLVKNTKGNRL---KEEWIAYILREILRGLAHLHNNK----------------VIHRDIKGQNVLLT  157 (953)
T ss_pred             EEEeeccCCccHHHHHhhhcccch---hhHHHHHHHHHHHHHHHHHhhcc----------------eeeecccCceEEEe
Confidence            9999999999  666655443333   45556677889999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCCC--CCccccCccccccccc------cccCC-cceeeh---hHHHHHcCCCCCCCC
Q psy6542         163 EHGHVRISDLGLACDFSKKK--PHASVESDCILHGYIK------KLGGP-FVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~------~~~~~-~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .++.|||+|||.+..+..+.  ..++.|||++|+|||.      ...|. ..|.|+   +..|+ ..+.+|+..
T Consensus       158 ~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEl-adG~PPl~D  230 (953)
T KOG0587|consen  158 ENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEM-AEGAPPLCD  230 (953)
T ss_pred             ccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehh-cCCCCCccC
Confidence            99999999999999887765  5678899999999982      22233 566677   44444 556666543

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.91  E-value=1.3e-23  Score=188.31  Aligned_cols=180  Identities=17%  Similarity=0.075  Sum_probs=133.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++.  .+++.||+|.++...    ....+.+|+.+++.++|||+        +++++++..+ ..|++|||+
T Consensus        16 ~g~~g~v~~~~--~~~~~~~iK~~~~~~----~~~~~~~e~~~l~~~~~~~i--------~~~~~~~~~~-~~~~v~e~~   80 (254)
T cd05083          16 EGEFGAVLQGE--YTGQKVAVKNIKCDV----TAQAFLEETAVMTKLHHKNL--------VRLLGVILHN-GLYIVMELM   80 (254)
T ss_pred             cCCCCceEecc--cCCCceEEEeecCcc----hHHHHHHHHHHHHhCCCCCc--------CeEEEEEcCC-CcEEEEECC
Confidence            45666888875  578899999987533    23467789999999999999        9999998755 479999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +..+......  ........+.++.|++.||.|||+.+                ++||||||+||+++.++.+||+
T Consensus        81 ~~~~L~~~l~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~~----------------~~H~dl~p~nili~~~~~~kl~  142 (254)
T cd05083          81 SKGNLVNFLRTRGR--ALVSVIQLLQFSLDVAEGMEYLESKK----------------LVHRDLAARNILVSEDGVAKVS  142 (254)
T ss_pred             CCCCHHHHHHhcCc--CCCCHHHHHHHHHHHHHHHHHHHhCC----------------eeccccCcceEEEcCCCcEEEC
Confidence            987 4433332211  11244556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++........ ....+..|++||... .. ....|+|+   ++|+++..+.+||...
T Consensus       143 Dfg~~~~~~~~~~-~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  201 (254)
T cd05083         143 DFGLARVGSMGVD-NSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKM  201 (254)
T ss_pred             CCccceeccccCC-CCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccC
Confidence            9999976543322 223356788898743 22 34566666   6777777677777543

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.91  E-value=1.6e-24  Score=203.27  Aligned_cols=184  Identities=17%  Similarity=0.151  Sum_probs=135.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC----------
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP----------   81 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~----------   81 (334)
                      .++.+.||+|.++.+|+.||||.+......  ..+.+.+|+++++.++|||+        +++++++...          
T Consensus        15 ~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~--~~~~~~~Ei~~l~~l~h~~i--------~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854          15 CGSNGLVFSAVDSDCDKRVAVKKIVLTDPQ--SVKHALREIKIIRRLDHDNI--------VKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             CCCCEEEEEEEECCCCcEEEEEEEecCCCc--hHHHHHHHHHHHHhcCCCcc--------hhhHhhhccccccccccccc
Confidence            467789999999999999999998765432  33567789999999999999        8888766543          


Q ss_pred             ----CeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCC
Q psy6542          82 ----NSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPA  157 (334)
Q Consensus        82 ----~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~  157 (334)
                          ..+|+||||+++++......  ..+   ....+..++.||+.||.|||+.+                ++||||||+
T Consensus        85 ~~~~~~~~lv~e~~~~~L~~~~~~--~~l---~~~~~~~~~~qi~~aL~~LH~~g----------------ivH~dikp~  143 (342)
T cd07854          85 LTELNSVYIVQEYMETDLANVLEQ--GPL---SEEHARLFMYQLLRGLKYIHSAN----------------VLHRDLKPA  143 (342)
T ss_pred             ccccceEEEEeecccccHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCHH
Confidence                46899999999874333221  122   34455667789999999999999                999999999


Q ss_pred             ceeeCCC-CCEEEEecccccccCCCCC-----CccccCcccccccccc--c-cCCcceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         158 NILLDEH-GHVRISDLGLACDFSKKKP-----HASVESDCILHGYIKK--L-GGPFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       158 NiLl~~~-~~vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~--~-~~~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      ||+++.+ +.+||+|||+++.......     ....++..|++||+..  . ....+|+|+  ++++.++.+..||.+..
T Consensus       144 Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~  223 (342)
T cd07854         144 NVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAH  223 (342)
T ss_pred             HEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999854 5689999999986543321     1234677899999642  2 234677777  44444455666776554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.91  E-value=2.4e-23  Score=185.49  Aligned_cols=186  Identities=18%  Similarity=0.134  Sum_probs=147.5

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHYIIG   88 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~ivm   88 (334)
                      .+++.+.||+|.+..+++.|++|++..........+.+.+|++++++++|+||        +++++.+.+.  +.++++|
T Consensus         9 ~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i--------~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           9 GRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNI--------VRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             eecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCE--------eeEEEEEecCCCCeEEEEE
Confidence            46788999999999999999999998766544456678889999999999999        9999999988  8999999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||++|+ +..+..... .+   .....+.++.|++.||.|||+.+                ++|+||+|+||+++.++.+
T Consensus        81 e~~~~~~L~~~~~~~~-~~---~~~~~~~~~~~l~~~l~~lh~~~----------------~~h~dl~p~ni~i~~~~~~  140 (260)
T cd06606          81 EYVSGGSLSSLLKKFG-KL---PEPVIRKYTRQILEGLAYLHSNG----------------IVHRDIKGANILVDSDGVV  140 (260)
T ss_pred             EecCCCcHHHHHHHcC-CC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCCHHHEEEcCCCCE
Confidence            999777 443333221 22   44556677889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCC----CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKK----PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       168 kl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|+|||.+.......    .....++..|++||....  ....+|+|+   ++|+++. +..||...
T Consensus       141 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~  206 (260)
T cd06606         141 KLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMAT-GKPPWSEL  206 (260)
T ss_pred             EEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCC
Confidence            999999998776654    344567888999997533  344677777   5566655 55566443

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.91  E-value=4.7e-24  Score=193.12  Aligned_cols=187  Identities=21%  Similarity=0.234  Sum_probs=143.4

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      ..++.+.||++....+|+.||||++..... .....+.+.+|.++++.++ |+||        +++++++..++.+++||
T Consensus        10 g~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i--------~~~~~~~~~~~~~~lv~   81 (280)
T cd05581          10 GEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGI--------IKLYYTFQDEENLYFVL   81 (280)
T ss_pred             cCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCc--------hhHHHHhcCCceEEEEE
Confidence            456788999999999999999999986443 2233456778999999999 9999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||+.|+ +..+.... .   .......+.++.|++.||.|||+.+                ++|+||+|+||+++.++.+
T Consensus        82 e~~~~~~L~~~l~~~-~---~l~~~~~~~i~~ql~~~l~~Lh~~~----------------~~H~dl~~~ni~i~~~~~~  141 (280)
T cd05581          82 EYAPNGELLQYIRKY-G---SLDEKCTRFYAAEILLALEYLHSKG----------------IIHRDLKPENILLDKDMHI  141 (280)
T ss_pred             cCCCCCcHHHHHHHc-C---CCCHHHHHHHHHHHHHHHHHHHHCC----------------eeecCCCHHHeEECCCCCE
Confidence            999777 53333322 1   2355566777889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCC----------------------CccccCcccccccccccc--CCcceeeh---hHHHHHcCCCC
Q psy6542         168 RISDLGLACDFSKKKP----------------------HASVESDCILHGYIKKLG--GPFVSAWQ---TRYAKLFPNRL  220 (334)
Q Consensus       168 kl~DFGla~~~~~~~~----------------------~~~~~t~~~~~~~v~~~~--~~~~~~w~---~~~~~l~~~~~  220 (334)
                      +|+|||++........                      ....++..|++||+....  ...+|+|+   ++++++ .+..
T Consensus       142 ~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~-~g~~  220 (280)
T cd05581         142 KITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQML-TGKP  220 (280)
T ss_pred             EecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHH-hCCC
Confidence            9999999986644321                      223456788899974322  34577777   455554 4666


Q ss_pred             CCCCCC
Q psy6542         221 ELHPES  226 (334)
Q Consensus       221 ~~~~~~  226 (334)
                      ||...+
T Consensus       221 p~~~~~  226 (280)
T cd05581         221 PFRGSN  226 (280)
T ss_pred             CCCCcc
Confidence            766544

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG1006|consensus

Probab=99.91  E-value=1.6e-25  Score=194.16  Aligned_cols=191  Identities=15%  Similarity=0.163  Sum_probs=146.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHH-HHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEI-FNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~i-l~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+-|++-.++++|+..|||.|+....+. ..+++..|.+. ++.-+.|||        |++|++....+..||.||+
T Consensus        74 ~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~k-eq~rll~e~d~~mks~~cp~I--------VkfyGa~F~EGdcWiCMEL  144 (361)
T KOG1006|consen   74 NGAFGTVNKMLHKPSGKLMAVKRIRSNNIEK-EQKRLLMEHDTVMKSSNCPNI--------VKFYGALFSEGDCWICMEL  144 (361)
T ss_pred             CCcchhhhhhhcCccCcEEEEEEeeeccchH-HHHHHHHHHHHHHhhcCCcHH--------HHHhhhhhcCCceeeeHHH
Confidence            6778899999999999999999999887644 34566667775 556678999        9999999999999999999


Q ss_pred             cCCChhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGPKDQISRSKI-NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~l~~l~~~~~-~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+-++|.+...-. ...+..++..+..|....+.||+||-+.-+               |||||+||+|||++..|.|||
T Consensus       145 Md~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lk---------------iIHRDvKPSNILldr~G~vKL  209 (361)
T KOG1006|consen  145 MDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELK---------------IIHRDVKPSNILLDRHGDVKL  209 (361)
T ss_pred             HhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhh---------------hhhccCChhheEEecCCCEee
Confidence            9999776544322 122344555566777788999999987543               999999999999999999999


Q ss_pred             EecccccccCCCCCCc-cccCcccccccc---ccccC-Ccceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHA-SVESDCILHGYI---KKLGG-PFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~-~~~t~~~~~~~v---~~~~~-~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      ||||+|-.+..+...+ ..|-..||+||-   ...|| -.+|+||  +..+..+++.+|+.+.+
T Consensus       210 CDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~  273 (361)
T KOG1006|consen  210 CDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWD  273 (361)
T ss_pred             ecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHH
Confidence            9999998776665433 456667888885   23344 4788888  33344477788876655

>KOG0664|consensus

Probab=99.91  E-value=7.5e-26  Score=196.98  Aligned_cols=187  Identities=15%  Similarity=0.172  Sum_probs=147.6

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC-----CeEEEE
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP-----NSHYII   87 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~-----~~~~iv   87 (334)
                      +-++-||-+.+..+|+.||+|.+......-...+++.+|..++..++|.|+        ....|..+-.     +.+|++
T Consensus        64 GAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNV--------LSaLDILQPph~dfFqEiYV~  135 (449)
T KOG0664|consen   64 GAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNV--------LSLLDILQPANPSFFQELYVL  135 (449)
T ss_pred             cceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccH--------HHHHHhcCCCCchHHHHHHHH
Confidence            446789999999999999999987665555566788899999999999999        7777776633     247899


Q ss_pred             EEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          88 GVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        88 mEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      +|++..+++.++-+.- .+   ...-+.-+++||++||.|||+.+                |+||||||.|.|+++++.+
T Consensus       136 TELmQSDLHKIIVSPQ-~L---s~DHvKVFlYQILRGLKYLHsA~----------------ILHRDIKPGNLLVNSNCvL  195 (449)
T KOG0664|consen  136 TELMQSDLHKIIVSPQ-AL---TPDHVKVFVYQILRGLKYLHTAN----------------ILHRDIKPGNLLVNSNCIL  195 (449)
T ss_pred             HHHHHhhhhheeccCC-CC---CcchhhhhHHHHHhhhHHHhhcc----------------hhhccCCCccEEeccCceE
Confidence            9999999877655431 23   22333344569999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCCCcc---ccCccccccccc---cccCCcceeeh--hHHHHHcCCCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKKPHAS---VESDCILHGYIK---KLGGPFVSAWQ--TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       168 kl~DFGla~~~~~~~~~~~---~~t~~~~~~~v~---~~~~~~~~~w~--~~~~~l~~~~~~~~~~~~  227 (334)
                      ||||||||+....+.....   .-|.+|-+||++   ..++...|+|+  |++..+.+.+.-|...+.
T Consensus       196 KICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~P  263 (449)
T KOG0664|consen  196 KICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGP  263 (449)
T ss_pred             EecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccCh
Confidence            9999999998877654332   238899999983   44455677777  999998988887776664

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.91  E-value=7.5e-24  Score=192.54  Aligned_cols=186  Identities=18%  Similarity=0.128  Sum_probs=141.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|....+++.||||.+........ .....+|+..++.++ |+|+        +++++++.+++..|+||||
T Consensus         9 ~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~~e~~~l~~~~~h~~i--------~~~~~~~~~~~~~~lv~e~   79 (283)
T cd07830           9 DGTFGSVYLARNKETGELVAIKKMKKKFYSWE-ECMNLREVKSLRKLNEHPNI--------VKLKEVFRENDELYFVFEY   79 (283)
T ss_pred             cCCceEEEEEEECCCCcEEEEEEehhhccchh-HHHHHHHHHHHHhccCCCCc--------hhHHHHhhcCCcEEEEEec
Confidence            46678999999999999999999876543211 123346899999999 9999        9999999999999999999


Q ss_pred             cCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|.+ +.+......   ......++.++.|++.+|.|||+++                ++|+||+|+||++++++.++|
T Consensus        80 ~~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~Lh~~~----------------i~H~dl~~~ni~i~~~~~~~l  140 (283)
T cd07830          80 MEGNLYQLMKDRKGK---PFSESVIRSIIYQILQGLAHIHKHG----------------FFHRDLKPENLLVSGPEVVKI  140 (283)
T ss_pred             CCCCHHHHHHhcccc---cCCHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCChhhEEEcCCCCEEE
Confidence            96664 333222211   2245556777889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC-CccccCcccccccccc---ccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP-HASVESDCILHGYIKK---LGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~---~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++........ ....++..|++||+..   .....+|.|+   ++++++. +.+||.+.+
T Consensus       141 ~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~-g~~~~~~~~  203 (283)
T cd07830         141 ADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYT-LRPLFPGSS  203 (283)
T ss_pred             eecccceeccCCCCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHh-CCCccCCCC
Confidence            99999987655433 2345678899999742   2245677777   5566655 566775554

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.90  E-value=6e-23  Score=188.54  Aligned_cols=186  Identities=11%  Similarity=-0.032  Sum_probs=128.3

Q ss_pred             CCCceEEEeceeCCC---CCcEEEEEeeCCCcchHHh---------hhHHHHHHHHHhcCCCCcccccccceeeEEEEee
Q psy6542          12 RVSKWRVKPPSLKPL---GFPIQIGMLRHRPHESRVA---------KWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS   79 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~---~~~vAIK~l~~~~~~~~~~---------~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~   79 (334)
                      .++.+.||+|.+..+   +..+|+|+...........         .....+...+..+.|+++        +++++.+.
T Consensus        22 ~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i--------~~~~~~~~   93 (294)
T PHA02882         22 CGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGI--------PKYYGCGS   93 (294)
T ss_pred             cCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCC--------CcEEEeee
Confidence            477889999999888   7778888754333211000         111223344566789999        99998766


Q ss_pred             cCC----eEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCC
Q psy6542          80 EPN----SHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK  155 (334)
Q Consensus        80 ~~~----~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlK  155 (334)
                      ...    ..+++||++...+..+.... ...   ....+..++.|++.||.|||+++                |+|||||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------iiHrDiK  153 (294)
T PHA02882         94 FKRCRMYYRFILLEKLVENTKEIFKRI-KCK---NKKLIKNIMKDMLTTLEYIHEHG----------------ISHGDIK  153 (294)
T ss_pred             EecCCceEEEEEEehhccCHHHHHHhh-ccC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCC
Confidence            443    45788998877643332221 112   34446678889999999999999                9999999


Q ss_pred             CCceeeCCCCCEEEEecccccccCCCC---------CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCC
Q psy6542         156 PANILLDEHGHVRISDLGLACDFSKKK---------PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       156 p~NiLl~~~~~vkl~DFGla~~~~~~~---------~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~  221 (334)
                      |+|||++.++.++|+|||+|+.+....         .....||+.|++|++.. .. +..+|+|+   ++|++ .++.+|
T Consensus       154 p~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el-~~g~~P  232 (294)
T PHA02882        154 PENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKW-AGIKLP  232 (294)
T ss_pred             HHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHH-HhCCCC
Confidence            999999999999999999998664221         12346899999999843 22 44566666   55665 556788


Q ss_pred             CCCCC
Q psy6542         222 LHPES  226 (334)
Q Consensus       222 ~~~~~  226 (334)
                      |.+.+
T Consensus       233 ~~~~~  237 (294)
T PHA02882        233 WKGFG  237 (294)
T ss_pred             CCccc
Confidence            86654

>KOG0665|consensus

Probab=99.90  E-value=2.5e-24  Score=191.10  Aligned_cols=182  Identities=19%  Similarity=0.170  Sum_probs=145.7

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC------CeEEEEEEc
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP------NSHYIIGVR   90 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~------~~~~ivmEy   90 (334)
                      -|-.|.+.-++++||||.+..........++..+|..++..+.|+||        ++++.+|.-.      ...|+||||
T Consensus        31 ~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~ni--------i~l~n~ftP~~~l~~~~e~y~v~e~  102 (369)
T KOG0665|consen   31 IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNI--------ISLLNVFTPQKTLEEFQEVYLVMEL  102 (369)
T ss_pred             eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccce--------eeeeeccCccccHHHHHhHHHHHHh
Confidence            57788889999999999998776655566778899999999999999        9999999733      357999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +++++.....      .+..-..+-.+++|++.|+.|||+.+                |+||||||+||+++.++.+||.
T Consensus       103 m~~nl~~vi~------~elDH~tis~i~yq~~~~ik~lhs~~----------------IihRdLkPsnivv~~~~~lKi~  160 (369)
T KOG0665|consen  103 MDANLCQVIL------MELDHETISYILYQMLCGIKHLHSAG----------------IIHRDLKPSNIVVNSDCTLKIL  160 (369)
T ss_pred             hhhHHHHHHH------HhcchHHHHHHHHHHHHHHHHHHhcc----------------eeecccCcccceecchhheeec
Confidence            9999544333      22244555667789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCC-CCCccccCccccccccc-cccCC-cceeeh--hHHHHHcCCCCCCCCCCCC
Q psy6542         171 DLGLACDFSKK-KPHASVESDCILHGYIK-KLGGP-FVSAWQ--TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       171 DFGla~~~~~~-~~~~~~~t~~~~~~~v~-~~~~~-~~~~w~--~~~~~l~~~~~~~~~~~~~  228 (334)
                      |||+|+....+ ....+..+-+|-+||+. ..+|. ..|+|+  |+...|..+..-|.|....
T Consensus       161 dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~i  223 (369)
T KOG0665|consen  161 DFGLARTEDTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHI  223 (369)
T ss_pred             cchhhcccCcccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHH
Confidence            99999988777 34446678888889973 44455 566666  7777777777777776643

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.90  E-value=5.7e-23  Score=187.61  Aligned_cols=184  Identities=15%  Similarity=0.140  Sum_probs=136.4

Q ss_pred             CCCceEEEecee---CCCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSL---KPLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~---~~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      .++...||++.+   ..+++.||||.+++...  .....+.+.+|++++..+ +|||+        +++++.+..+..+|
T Consensus        10 ~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i--------~~~~~~~~~~~~~~   81 (288)
T cd05583          10 TGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFL--------VTLHYAFQTDTKLH   81 (288)
T ss_pred             cCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcch--------hhhheeeecCCEEE
Confidence            345567887764   46789999999986433  223445677899999999 59999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||+.|+ +....... ..+   ....+..++.|++.||.|||+.+                ++||||||.||+++.+
T Consensus        82 lv~e~~~~~~L~~~~~~~-~~~---~~~~~~~~~~ql~~~l~~lH~~~----------------~~H~dl~p~nil~~~~  141 (288)
T cd05583          82 LILDYVNGGELFTHLYQR-EHF---TESEVRVYIAEIVLALDHLHQLG----------------IIYRDIKLENILLDSE  141 (288)
T ss_pred             EEEecCCCCcHHHHHhhc-CCc---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCCHHHeEECCC
Confidence            999999987 32222211 122   34455667779999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCC---CccccCccccccccccc----cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKKP---HASVESDCILHGYIKKL----GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~~----~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +.++|+|||+++.+.....   ....++..|++||....    ....+|+|+   ++|+++. +..||..
T Consensus       142 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~  210 (288)
T cd05583         142 GHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLT-GASPFTV  210 (288)
T ss_pred             CCEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHh-CCCCccc
Confidence            9999999999986544322   23457888999997432    244567776   5566654 6666643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.89  E-value=1.2e-22  Score=206.25  Aligned_cols=159  Identities=14%  Similarity=0.159  Sum_probs=129.2

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .+++.+.||+|.+..+++.||||+++.... .......+..|+.+++.++||||        +++++++...+.+|||||
T Consensus        13 G~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~I--------v~~~~~~~~~~~~~lVmE   84 (669)
T cd05610          13 SRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFI--------VHLYYSLQSANNVYLVME   84 (669)
T ss_pred             ecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCc--------CeEEEEEEECCEEEEEEe
Confidence            467888999999999999999999986544 34445678889999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +..++... ..+   ....++.++.||+.||.|||.++                |+||||||+|||++.++.+|
T Consensus        85 y~~g~~L~~li~~~-~~l---~~~~~~~i~~qil~aL~yLH~~g----------------IiHrDLKP~NILl~~~g~vk  144 (669)
T cd05610          85 YLIGGDVKSLLHIY-GYF---DEEMAVKYISEVALALDYLHRHG----------------IIHRDLKPDNMLISNEGHIK  144 (669)
T ss_pred             CCCCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EEeCCccHHHEEEcCCCCEE
Confidence            99887 54333221 122   33445677789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCcccccccc
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYI  197 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v  197 (334)
                      |+|||+++......  .....+|+.|++|+.
T Consensus       145 L~DFGls~~~~~~~~~~~~~~~t~~~~~pe~  175 (669)
T cd05610         145 LTDFGLSKVTLNRELNMMDILTTPSMAKPKN  175 (669)
T ss_pred             EEeCCCCccccCCcccccccccCccccCccc
Confidence            99999998765443  233456777887775

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.89  E-value=7.3e-23  Score=183.88  Aligned_cols=186  Identities=17%  Similarity=0.114  Sum_probs=136.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++...||++.+..++..+++|+++....   .......+..|+.+++.++|||+        +++++.+.++...++||
T Consensus        10 ~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~   81 (260)
T cd08222          10 KGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAI--------VKFHASFLERDAFCIIT   81 (260)
T ss_pred             CCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcH--------HHHHHHHhcCCceEEEE
Confidence            56778999999998888888888875432   22223356679999999999999        99999999899999999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||+.++ ++.+................+.++.|++.||.|||+.+                ++|+||||+||++++ +.+
T Consensus        82 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~----------------i~h~~l~~~nili~~-~~~  144 (260)
T cd08222          82 EYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRR----------------ILHRDLKAKNIFLKN-NLL  144 (260)
T ss_pred             EeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcC----------------ccccCCChhheEeec-CCE
Confidence            999987 54433321111123355566777889999999999999                999999999999975 569


Q ss_pred             EEEecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCC
Q psy6542         168 RISDLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       168 kl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      +|+|||++.......  .....++..|++||... .. ...+|+|+   ++|+++. +..||.
T Consensus       145 ~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~-~~~~~~  206 (260)
T cd08222         145 KIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCC-LAHAFE  206 (260)
T ss_pred             eecccCceeecCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHh-CCCCCC
Confidence            999999998664432  22345678899999742 22 34566666   5556554 444553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG1152|consensus

Probab=99.89  E-value=1.4e-23  Score=198.45  Aligned_cols=166  Identities=17%  Similarity=0.160  Sum_probs=135.5

Q ss_pred             ceEEEeceeCCCCCcEEEEEeeCCCc--chHHhh----hHHHHHHHHHhcC---CCCcccccccceeeEEEEeecCCeEE
Q psy6542          15 KWRVKPPSLKPLGFPIQIGMLRHRPH--ESRVAK----WRPYIQEIFNHLR---NEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        15 ~~~V~~a~~~~~~~~vAIK~l~~~~~--~~~~~~----~~~~E~~il~~l~---h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      -++|++|.+++.+..|.||.|++.+.  +..++.    -..-|++||..++   |+||        +++.++|++++++|
T Consensus       574 yGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NI--------lKlLdfFEddd~yy  645 (772)
T KOG1152|consen  574 YGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENI--------LKLLDFFEDDDYYY  645 (772)
T ss_pred             cceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccch--------hhhhheeecCCeeE
Confidence            45999999999999999999998764  222221    3345999999998   9999        99999999999999


Q ss_pred             EEEEccCCC---hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          86 IIGVRQSGP---KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        86 ivmEy~~g~---l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      |+||-...|   +|++-...  +..+   ...-.|+.|++.|+.+||+.+                |||||||-+|++++
T Consensus       646 l~te~hg~gIDLFd~IE~kp--~m~E---~eAk~IFkQV~agi~hlh~~~----------------ivhrdikdenvivd  704 (772)
T KOG1152|consen  646 LETEVHGEGIDLFDFIEFKP--RMDE---PEAKLIFKQVVAGIKHLHDQG----------------IVHRDIKDENVIVD  704 (772)
T ss_pred             EEecCCCCCcchhhhhhccC--ccch---HHHHHHHHHHHhccccccccC----------------ceecccccccEEEe
Confidence            999977666   44443322  3333   333445669999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCCCCCccccCcccccccccc---ccCCcceeeh
Q psy6542         163 EHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKK---LGGPFVSAWQ  209 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~---~~~~~~~~w~  209 (334)
                      .+|.+||+|||.|....++.-..+.||.-|++||++.   +-+...|+|.
T Consensus       705 ~~g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwa  754 (772)
T KOG1152|consen  705 SNGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWA  754 (772)
T ss_pred             cCCeEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhh
Confidence            9999999999999988888888899999999999953   2355667777

>KOG0199|consensus

Probab=99.88  E-value=1.5e-22  Score=195.01  Aligned_cols=228  Identities=16%  Similarity=0.119  Sum_probs=168.3

Q ss_pred             CCCceEEEeceeCC-CC--CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKP-LG--FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-~~--~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      .++++-|+.+.-+. .|  ..||||.++...... ....|.+|+.+|.+|+|+|+        +++|++..+ ....|||
T Consensus       120 ~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~-~mddflrEas~M~~L~H~hl--------iRLyGvVl~-qp~mMV~  189 (1039)
T KOG0199|consen  120 EGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA-IMDDFLREASHMLKLQHPHL--------IRLYGVVLD-QPAMMVF  189 (1039)
T ss_pred             CcceeeEeeccccCCCCcEEeEEEEeccCCccch-hHHHHHHHHHHHHhccCcce--------eEEeeeecc-chhhHHh
Confidence            35677777776543 33  357999999887754 45578899999999999999        999999987 7899999


Q ss_pred             EccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          89 VRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        89 Ey~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |++.+|  ++.+.......+   ....+-.++.||+.|+.||..++                +|||||-..|+|+.....
T Consensus       190 ELaplGSLldrLrka~~~~l---lv~~Lcdya~QiA~aM~YLeskr----------------lvHRDLAARNlllasprt  250 (1039)
T KOG0199|consen  190 ELAPLGSLLDRLRKAKKAIL---LVSRLCDYAMQIAKAMQYLESKR----------------LVHRDLAARNLLLASPRT  250 (1039)
T ss_pred             hhcccchHHHHHhhccccce---eHHHHHHHHHHHHHHHHHHhhhh----------------hhhhhhhhhhheecccce
Confidence            999999  666655232233   44555567779999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCCCcccc-----Ccccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         167 VRISDLGLACDFSKKKPHASVE-----SDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~~~~~-----t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                      |||+||||.+.+.........+     ...+++||.++  ..+..+|+|.   ++|||+.++.-||.|.+.   .+    
T Consensus       251 VKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g---~q----  323 (1039)
T KOG0199|consen  251 VKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRG---IQ----  323 (1039)
T ss_pred             eeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCH---HH----
Confidence            9999999999887665432222     35567888643  3355677777   999999999988877652   11    


Q ss_pred             ccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch
Q psy6542         237 DQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC  299 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~  299 (334)
                                        |...+  |-..|+..+    +.++..+..++..||.-...++..+
T Consensus       324 ------------------IL~~i--D~~erLpRP----k~csedIY~imk~cWah~paDRptF  362 (1039)
T KOG0199|consen  324 ------------------ILKNI--DAGERLPRP----KYCSEDIYQIMKNCWAHNPADRPTF  362 (1039)
T ss_pred             ------------------HHHhc--cccccCCCC----CCChHHHHHHHHHhccCCccccccH
Confidence                              11111  122233333    6667788888899998776655555

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=8.9e-22  Score=208.24  Aligned_cols=173  Identities=11%  Similarity=0.083  Sum_probs=129.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|..+.+|..||||.+......      ...|++++++++||||        |++++++.+++..|+||||+
T Consensus       700 ~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~l~~l~HpnI--------v~~~~~~~~~~~~~lv~Ey~  765 (968)
T PLN00113        700 RGKKGASYKGKSIKNGMQFVVKEINDVNSI------PSSEIADMGKLQHPNI--------VKLIGLCRSEKGAYLIHEYI  765 (968)
T ss_pred             cCCCeeEEEEEECCCCcEEEEEEccCCccc------cHHHHHHHhhCCCCCc--------ceEEEEEEcCCCCEEEEeCC
Confidence            567789999999999999999998743321      1236889999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+..    .+   .......++.|++.||.|||....             ++|+||||||+||+++.++..++.
T Consensus       766 ~~g~L~~~l~----~l---~~~~~~~i~~~ia~~L~yLH~~~~-------------~~iiH~dlkp~Nil~~~~~~~~~~  825 (968)
T PLN00113        766 EGKNLSEVLR----NL---SWERRRKIAIGIAKALRFLHCRCS-------------PAVVVGNLSPEKIIIDGKDEPHLR  825 (968)
T ss_pred             CCCcHHHHHh----cC---CHHHHHHHHHHHHHHHHHhccCCC-------------CCeecCCCCHHhEEECCCCceEEE
Confidence            988 543332    12   334456778899999999995421             229999999999999999888775


Q ss_pred             ecccccccCCCCCCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCC
Q psy6542         171 DLGLACDFSKKKPHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                       ||.+......  ....++..|++||+..  ....++|+|+   ++||++. +..||
T Consensus       826 -~~~~~~~~~~--~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~t-g~~p~  878 (968)
T PLN00113        826 -LSLPGLLCTD--TKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLT-GKSPA  878 (968)
T ss_pred             -eccccccccC--CCccccccccCcccccCCCCCcccchhhHHHHHHHHHh-CCCCC
Confidence             7766543322  2235788999999853  2345677777   6667655 45565

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.88  E-value=6e-22  Score=185.66  Aligned_cols=147  Identities=14%  Similarity=0.070  Sum_probs=111.4

Q ss_pred             CCCceEEEeceeCC-CCCcEEEEEeeCCCc---chHHhhhHHHHHHHHHhcCCCCccccccccee-eEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLKP-LGFPIQIGMLRHRPH---ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKM-NLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-~~~~vAIK~l~~~~~---~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v-~~~~~~~~~~~~~i   86 (334)
                      +++...||+|.++. +++.||||.+.....   .......+.+|+++|+.++|+|+        + .+++.    +..|+
T Consensus        28 ~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~i--------v~~l~~~----~~~~L   95 (365)
T PRK09188         28 RDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGV--------VPQLLAT----GKDGL   95 (365)
T ss_pred             ecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCC--------CcEEEEc----CCcEE
Confidence            67888999999886 788889998764321   23345678899999999999998        6 45543    45799


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCC-CCCceeeCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDL-KPANILLDEH  164 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDl-Kp~NiLl~~~  164 (334)
                      ||||++|+ +... .    ..   ..   ..++.|++.+|.|||+++                |+|||| ||+|||++.+
T Consensus        96 VmE~~~G~~L~~~-~----~~---~~---~~~~~~i~~aL~~lH~~g----------------IiHrDL~KP~NILv~~~  148 (365)
T PRK09188         96 VRGWTEGVPLHLA-R----PH---GD---PAWFRSAHRALRDLHRAG----------------ITHNDLAKPQNWLMGPD  148 (365)
T ss_pred             EEEccCCCCHHHh-C----cc---ch---HHHHHHHHHHHHHHHHCC----------------CeeCCCCCcceEEEcCC
Confidence            99999998 4311 1    00   11   245569999999999999                999999 9999999999


Q ss_pred             CCEEEEecccccccCCCCC----------CccccCcccccccc
Q psy6542         165 GHVRISDLGLACDFSKKKP----------HASVESDCILHGYI  197 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~----------~~~~~t~~~~~~~v  197 (334)
                      +.+||+|||+|+.+.....          ....++..|++||+
T Consensus       149 ~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~  191 (365)
T PRK09188        149 GEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDA  191 (365)
T ss_pred             CCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCccc
Confidence            9999999999996654431          22345666777776

>KOG0576|consensus

Probab=99.88  E-value=1.6e-23  Score=200.86  Aligned_cols=227  Identities=14%  Similarity=0.057  Sum_probs=161.7

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      +.-+-||+|+++.+++..|+|+++....++  .+-.++|+-+++.++||||        |.+|+.+-..+.+||.||||.
T Consensus        26 gTygdvyKaRd~~s~elaavkvVkLep~dd--~~~iqqei~~~~dc~h~ni--------vay~gsylr~dklwicMEycg   95 (829)
T KOG0576|consen   26 GTYGDVYKARDKRSGELAAVKVVKLEPGDD--FSGIQQEIGMLRDCRHPNI--------VAYFGSYLRRDKLWICMEYCG   95 (829)
T ss_pred             CcccchhhhcccccCchhhheeeeccCCcc--ccccccceeeeecCCCcCh--------HHHHhhhhhhcCcEEEEEecC
Confidence            344589999999999999999999887754  3456779999999999999        999999999999999999999


Q ss_pred             CC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          93 GP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        93 g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      || ++.+.. .-..+   .+.++...+.+.+.||.|||+.+                -+|||||-+|||+++.|.||++|
T Consensus        96 ggslQdiy~-~Tgpl---selqiayvcRetl~gl~ylhs~g----------------k~hRdiKGanilltd~gDvklaD  155 (829)
T KOG0576|consen   96 GGSLQDIYH-VTGPL---SELQIAYVCRETLQGLKYLHSQG----------------KIHRDIKGANILLTDEGDVKLAD  155 (829)
T ss_pred             CCcccceee-ecccc---hhHHHHHHHhhhhccchhhhcCC----------------cccccccccceeecccCceeecc
Confidence            99 433312 12233   44445566779999999999999                89999999999999999999999


Q ss_pred             cccccccCCCC--CCccccCcccccccc----ccccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhccccc-
Q psy6542         172 LGLACDFSKKK--PHASVESDCILHGYI----KKLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIE-  240 (334)
Q Consensus       172 FGla~~~~~~~--~~~~~~t~~~~~~~v----~~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~-  240 (334)
                      ||.+..+....  ..++.||+++|+|||    ...+|....|+|    ...++ .--++|.+........-++....+- 
T Consensus       156 fgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel-~eLqpplfdlhpmr~l~LmTkS~~qp  234 (829)
T KOG0576|consen  156 FGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIEL-GELQPPLFDLHPMRALFLMTKSGFQP  234 (829)
T ss_pred             cCchhhhhhhhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhh-hhcCCcccccchHHHHHHhhccCCCC
Confidence            99998776654  467899999999998    356677666666    22232 3333343332211111111111110 


Q ss_pred             --ccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         241 --EVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       241 --~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                        -.....|...-...+...+.++|+.|.+.+
T Consensus       235 p~lkDk~kws~~fh~fvK~altknpKkRptae  266 (829)
T KOG0576|consen  235 PTLKDKTKWSEFFHNFVKGALTKNPKKRPTAE  266 (829)
T ss_pred             CcccCCccchHHHHHHHHHHhcCCCccCCChh
Confidence              011122222234567777788888888876

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.88  E-value=8e-22  Score=173.61  Aligned_cols=180  Identities=22%  Similarity=0.247  Sum_probs=140.8

Q ss_pred             ceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC
Q psy6542          15 KWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP   94 (334)
Q Consensus        15 ~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~   94 (334)
                      ...||+|....+|+.||+|++........ .+.+.+|+++++.++|+|+        +++++.+..+...+++|||++++
T Consensus         2 ~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~~e~~~~~~l~~~~i--------~~~~~~~~~~~~~~l~~e~~~~~   72 (244)
T smart00220        2 FGKVYLARDKKTGKLVAIKVIKKEKIKKK-RERILREISILKKLKHPNI--------VRLYDVFEDEDKLYLVMEYCDGG   72 (244)
T ss_pred             ceEEEEEEECCCCcEEEEEEecccccccH-HHHHHHHHHHHHhCCCCcH--------HHHHhheeeCCEEEEEEeCCCCC
Confidence            46899999999999999999987655332 5678889999999999999        99999999989999999999996


Q ss_pred             -hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecc
Q psy6542          95 -KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLG  173 (334)
Q Consensus        95 -l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFG  173 (334)
                       +..+..... .   ......+.++.|++.++.|||+.+                ++|+||+|+||++++++.++|+|||
T Consensus        73 ~L~~~~~~~~-~---~~~~~~~~~~~~l~~~l~~lh~~~----------------i~h~~i~~~ni~~~~~~~~~l~d~~  132 (244)
T smart00220       73 DLFDLLKKRG-R---LSEDEARFYARQILSALEYLHSNG----------------IIHRDLKPENILLDEDGHVKLADFG  132 (244)
T ss_pred             CHHHHHHhcc-C---CCHHHHHHHHHHHHHHHHHHHHcC----------------eecCCcCHHHeEECCCCcEEEcccc
Confidence             543322221 1   345566778889999999999999                9999999999999999999999999


Q ss_pred             cccccCCC-CCCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         174 LACDFSKK-KPHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       174 la~~~~~~-~~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      ++...... ......++..|++||...  .....+|+|+   ++++++. +..||..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~-~~~p~~~  188 (244)
T smart00220      133 LARQLDPGGLLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLT-GKPPFPG  188 (244)
T ss_pred             ceeeeccccccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Confidence            99877654 233455678889999753  2344566666   5555554 5556543

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG3653|consensus

Probab=99.88  E-value=7.6e-22  Score=183.11  Aligned_cols=178  Identities=14%  Similarity=0.140  Sum_probs=138.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHh--cCCCCcccccccceeeEEEEeecCC----eE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNH--LRNEPFKKCVLLFKMNLYKVTSEPN----SH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~--l~h~~i~~~~~~~~v~~~~~~~~~~----~~   84 (334)
                      .|+..+.||+|....  +.||||++..     ...+.+++|-+|++.  ++|+||        ++|+++-....    .+
T Consensus       219 ~~Grfg~V~KaqL~~--~~VAVKifp~-----~~kqs~~~Ek~Iy~lp~m~h~nI--------l~Fi~~ekr~t~~~~ey  283 (534)
T KOG3653|consen  219 GRGRFGCVWKAQLDN--RLVAVKIFPE-----QEKQSFQNEKNIYSLPGMKHENI--------LQFIGAEKRGTADRMEY  283 (534)
T ss_pred             hcCccceeehhhccC--ceeEEEecCH-----HHHHHHHhHHHHHhccCccchhH--------HHhhchhccCCccccce
Confidence            367788999997655  9999999873     244578889999886  789999        99998877554    79


Q ss_pred             EEEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          85 YIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        85 ~ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      ++|+||.+.|  -++++.+-+      ......+++..+++||.|||+.-.       +.-.-+|+|+|||||.+|||+.
T Consensus       284 wLVt~fh~kGsL~dyL~~nti------sw~~~cria~SmarGLa~LHee~p-------~~d~~Kp~IaHRDlkSkNVLvK  350 (534)
T KOG3653|consen  284 WLVTEFHPKGSLCDYLKANTI------SWNSLCRIAESMARGLAHLHEELP-------RGDHHKPPIAHRDLKSKNVLVK  350 (534)
T ss_pred             eEEeeeccCCcHHHHHHhccc------cHHHHHHHHHHHHHHHHHhcccCC-------cCCCCCCccccccccccceEEc
Confidence            9999998877  455544432      444456777899999999999752       4456789999999999999999


Q ss_pred             CCCCEEEEecccccccCCCC----CCccccCccccccccccccCC--------cceeeh---hHHHHHc
Q psy6542         163 EHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKKLGGP--------FVSAWQ---TRYAKLF  216 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~~~~--------~~~~w~---~~~~~l~  216 (334)
                      +|+++.|+|||||..+..+.    .....||..||+||++.....        ..|+.+   ++||++.
T Consensus       351 ~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~S  419 (534)
T KOG3653|consen  351 NDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIAS  419 (534)
T ss_pred             cCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999876554    345678999999999543322        345555   6777764

>KOG1025|consensus

Probab=99.87  E-value=1.4e-22  Score=198.02  Aligned_cols=238  Identities=16%  Similarity=0.120  Sum_probs=171.8

Q ss_pred             CceEEEeceeCCC----CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          14 SKWRVKPPSLKPL----GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        14 ~~~~V~~a~~~~~----~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      -++.||++.....    +.+||||++....... ..+.+..|+-+|..++|||+        +++.+++.... +-||++
T Consensus       708 AfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~-~s~e~LdeAl~masldHpnl--------~RLLgvc~~s~-~qlvtq  777 (1177)
T KOG1025|consen  708 AFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPK-ASIELLDEALRMASLDHPNL--------LRLLGVCMLST-LQLVTQ  777 (1177)
T ss_pred             cceeEEeeeEecCCceecceeEEEEeeccCCch-hhHHHHHHHHHHhcCCCchH--------HHHhhhcccch-HHHHHH
Confidence            3567777765443    4567999988766533 34567889999999999999        99999987655 789999


Q ss_pred             ccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          90 RQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        90 y~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      |+++|  +|++..++    .....+.++.|++||++||.|||++.                ++||||-..|+|+.+-.+|
T Consensus       778 ~mP~G~LlDyvr~hr----~~igsq~lLnw~~QIAkgM~YLe~qr----------------lVHrdLaaRNVLVksP~hv  837 (1177)
T KOG1025|consen  778 LMPLGCLLDYVREHR----DNIGSQDLLNWCYQIAKGMKYLEEQR----------------LVHRDLAARNVLVKSPNHV  837 (1177)
T ss_pred             hcccchHHHHHHHhh----ccccHHHHHHHHHHHHHHHHHHHhcc----------------hhhhhhhhhheeecCCCeE
Confidence            99999  77776654    33356677899999999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCCCccccCcccccccc------ccccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         168 RISDLGLACDFSKKKPHASVESDCILHGYI------KKLGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       168 kl~DFGla~~~~~~~~~~~~~t~~~~~~~v------~~~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      ||.|||+|+.+..+..........++.+++      .......+|+|+   .+||+|+.+.-|+.+.+..+.++++    
T Consensus       838 kitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dll----  913 (1177)
T KOG1025|consen  838 KITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLL----  913 (1177)
T ss_pred             EEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHH----
Confidence            999999999887765433322223444444      234456788888   9999999988888776633222211    


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhccccc--chhHHHHHHHHHHhC
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAH--KCSQELLGSMARKAG  312 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--r~~~~lL~~l~~~~~  312 (334)
                                            +     .+..+++.+..+.++..+++.||+.....+.  +...+-..+|.+.+.
T Consensus       914 ----------------------e-----~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ardpq  962 (1177)
T KOG1025|consen  914 ----------------------E-----KGERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARDPQ  962 (1177)
T ss_pred             ----------------------h-----ccccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcCcc
Confidence                                  1     1112334577778888888999987643333  334444555555443

>KOG0671|consensus

Probab=99.87  E-value=7.4e-22  Score=179.02  Aligned_cols=282  Identities=16%  Similarity=0.108  Sum_probs=185.2

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCC--CCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRN--EPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h--~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +-+++|-.+++.+++..||||+++....   ......-|+++++++.+  |+-    ..-+|++.++|+-.++.|||+|.
T Consensus       100 GtFGkV~ec~D~~~~~~vAlKIik~V~k---YreAa~iEi~vLqki~~~DP~g----~~rcv~m~~wFdyrghiCivfel  172 (415)
T KOG0671|consen  100 GTFGKVVECWDRETKEHVALKIIKNVDK---YREAALIEIEVLQKINESDPNG----KFRCVQMRDWFDYRGHICIVFEL  172 (415)
T ss_pred             CcccceEEEeecCCCceehHHHHHHHHH---HhhHHHHHHHHHHHHHhcCCCC----ceEEEeeehhhhccCceEEEEec
Confidence            5567999999999999999999995443   22234459999999842  331    11248999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC------
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE------  163 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~------  163 (334)
                      ++-+ .|++..+....+   +...+..+..|++.++.|||+.+                ++|-||||+|||+.+      
T Consensus       173 lG~S~~dFlk~N~y~~f---pi~~ir~m~~QL~~sv~fLh~~k----------------l~HTDLKPENILfvss~~~~~  233 (415)
T KOG0671|consen  173 LGLSTFDFLKENNYIPF---PIDHIRHMGYQLLESVAFLHDLK----------------LTHTDLKPENILFVSSEYFKT  233 (415)
T ss_pred             cChhHHHHhccCCcccc---chHHHHHHHHHHHHHHHHHHhcc----------------eeecCCChheEEEeccceEEE
Confidence            9866 788877655555   55666677789999999999999                999999999999932      


Q ss_pred             --------------CCCEEEEecccccccCCCCCCccccCcccccccc-cccc-CCcceeeh--hHHHHHcCCCCCCCCC
Q psy6542         164 --------------HGHVRISDLGLACDFSKKKPHASVESDCILHGYI-KKLG-GPFVSAWQ--TRYAKLFPNRLELHPE  225 (334)
Q Consensus       164 --------------~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v-~~~~-~~~~~~w~--~~~~~l~~~~~~~~~~  225 (334)
                                    +..++|+|||.|+...+.. .+...|-.|-+||| +..| +.+.|+||  |+...+++|..-|+..
T Consensus       234 ~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h-s~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtH  312 (415)
T KOG0671|consen  234 YNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH-STIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTH  312 (415)
T ss_pred             eccCCccceeccCCCcceEEEecCCcceeccCc-ceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccC
Confidence                          2458999999998766665 34556888999998 5666 45677777  4444445555556666


Q ss_pred             CCCCcccchhccccc-ccccccccHhHHHHHHHhhccCchhhcCCCcccCCC----CCCCCChhhHHHhhhhcccccchh
Q psy6542         226 SGQSKPELIFMDQIE-EVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKG----PFPHVDEIGLKEWSLSLRSAHKCS  300 (334)
Q Consensus       226 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~r~~  300 (334)
                      .+  .-++.+++.+. ++|..+..-  .. -.....++   ++.-+--..++    +...-.-  +...+..-+......
T Consensus       313 en--~EHLaMMerIlGp~P~~mi~r--~~-~~Kyf~~~---rldw~e~~~~~~~k~v~~~ckp--l~~~~~~~d~e~~~L  382 (415)
T KOG0671|consen  313 EN--LEHLAMMERILGPIPSRMIKK--TR-KEKYFRRG---RLDWPEVSSKGKSKYVFEPCKP--LKKYMLQDDLEHVQL  382 (415)
T ss_pred             Cc--HHHHHHHHHhhCCCcHHHhhh--hh-hHhhhhcc---cccCccccccccchhhhcCCcc--HHHHhccCcHHHhHH
Confidence            63  33344444443 333333310  00 11111111   11100000000    0000011  222334444555558


Q ss_pred             HHHHHHHHHHhCCCCCCcccccccccccccc
Q psy6542         301 QELLGSMARKAGKIYGTTDREKNSILGTRTA  331 (334)
Q Consensus       301 ~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~  331 (334)
                      .++|+.|......++-+..|.-.+|++++..
T Consensus       383 fDLl~~mL~fDP~~RiTl~EAL~HpFF~~~~  413 (415)
T KOG0671|consen  383 FDLLRRMLEFDPARRITLREALSHPFFARLT  413 (415)
T ss_pred             HHHHHHHHccCccccccHHHHhcCHHhhcCC
Confidence            8889999998888899999999999988754

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.85  E-value=3.6e-21  Score=191.45  Aligned_cols=160  Identities=17%  Similarity=0.100  Sum_probs=103.8

Q ss_pred             CCCceEEEeceeCCC----CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEE--eecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPL----GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKV--TSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~----~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~--~~~~~~~~   85 (334)
                      +++.+.||+|.+..+    +..||||.+.......    ....|  .+....+.++....    ..++..  ...+..++
T Consensus       142 ~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e----~~~~e--~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  211 (566)
T PLN03225        142 EGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVE----IWMNE--RVRRACPNSCADFV----YGFLEPVSSKKEDEYW  211 (566)
T ss_pred             eCCCeEEEEEEEcCCccccCcEEEEEEecccchhH----HHHHH--HHHhhchhhHHHHH----HhhhcccccccCCceE
Confidence            578889999999999    9999999886433211    11111  11222222220000    111111  24567799


Q ss_pred             EEEEccCCC-hhHHhhhhhhhh----------------hHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCc
Q psy6542          86 IIGVRQSGP-KDQISRSKINRY----------------HKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPC  148 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~----------------~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~  148 (334)
                      +||||++++ +..+.......+                .......+..++.|++.||.|||+++                
T Consensus       212 LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~g----------------  275 (566)
T PLN03225        212 LVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTG----------------  275 (566)
T ss_pred             EEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCC----------------
Confidence            999999988 433322211000                01112334567889999999999999                


Q ss_pred             EEeeCCCCCceeeCC-CCCEEEEecccccccCCCC---CCccccCcccccccc
Q psy6542         149 LHFRDLKPANILLDE-HGHVRISDLGLACDFSKKK---PHASVESDCILHGYI  197 (334)
Q Consensus       149 iiHrDlKp~NiLl~~-~~~vkl~DFGla~~~~~~~---~~~~~~t~~~~~~~v  197 (334)
                      |+||||||+|||++. ++.+||+|||+|+.+....   .....+++.|++||.
T Consensus       276 IiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~  328 (566)
T PLN03225        276 IVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQ  328 (566)
T ss_pred             EEeCcCCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHH
Confidence            999999999999986 5789999999998654332   344677899999995

>KOG1027|consensus

Probab=99.85  E-value=9.3e-22  Score=192.96  Aligned_cols=218  Identities=15%  Similarity=0.127  Sum_probs=149.8

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEccCCCh
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPK   95 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~l   95 (334)
                      -||.+..  .|+.||||.+-...     ....++|++.|+.-+ ||||        |++|+.-.+.+..||..|.|...+
T Consensus       525 ~Vf~G~y--e~R~VAVKrll~e~-----~~~A~rEi~lL~eSD~H~Nv--------iRyyc~E~d~qF~YIalELC~~sL  589 (903)
T KOG1027|consen  525 VVFRGVY--EGREVAVKRLLEEF-----FDFAQREIQLLQESDEHPNV--------IRYYCSEQDRQFLYIALELCACSL  589 (903)
T ss_pred             EEEEEee--CCceehHHHHhhHh-----HHHHHHHHHHHHhccCCCce--------EEEEeeccCCceEEEEehHhhhhH
Confidence            5666654  35799999876433     335567999999884 9999        999999999999999999999996


Q ss_pred             hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC---CC--CEEEE
Q psy6542          96 DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE---HG--HVRIS  170 (334)
Q Consensus        96 ~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~---~~--~vkl~  170 (334)
                      +.+................+..+.|++.||.+||+.+                |+||||||+||||+.   ++  .++|+
T Consensus       590 ~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~----------------iVHRDLkPQNILI~~~~~~~~~ra~iS  653 (903)
T KOG1027|consen  590 QDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLK----------------IVHRDLKPQNILISVPSADGTLRAKIS  653 (903)
T ss_pred             HHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcc----------------cccccCCCceEEEEccCCCcceeEEec
Confidence            6555543111111111234556679999999999999                999999999999976   34  47999


Q ss_pred             ecccccccCCCCC-----CccccCcccccccccccc--CCcceeeh--h-HHHHHcCCCCCCCCCCCCCcccchhcc---
Q psy6542         171 DLGLACDFSKKKP-----HASVESDCILHGYIKKLG--GPFVSAWQ--T-RYAKLFPNRLELHPESGQSKPELIFMD---  237 (334)
Q Consensus       171 DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~~~--~~~~~~w~--~-~~~~l~~~~~~~~~~~~~~~~~~i~~~---  237 (334)
                      |||+|+.+..+..     ....||..+.+||++...  ....|+.+  | +|+.+.++.-|| |.+...-..++...   
T Consensus       654 DfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpF-Gd~~~R~~NIl~~~~~L  732 (903)
T KOG1027|consen  654 DFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPF-GDSLERQANILTGNYTL  732 (903)
T ss_pred             ccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCC-CchHHhhhhhhcCccce
Confidence            9999998876653     345679999999985433  34566666  4 455566777777 33322211221111   


Q ss_pred             -cccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         238 -QIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       238 -~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                       .+.+..    +....+.|..++..+|..|.+..
T Consensus       733 ~~L~~~~----d~eA~dLI~~ml~~dP~~RPsa~  762 (903)
T KOG1027|consen  733 VHLEPLP----DCEAKDLISRMLNPDPQLRPSAT  762 (903)
T ss_pred             eeeccCc----hHHHHHHHHHhcCCCcccCCCHH
Confidence             111111    11355667777778888888765

>KOG0200|consensus

Probab=99.85  E-value=5.1e-21  Score=192.02  Aligned_cols=187  Identities=14%  Similarity=0.100  Sum_probs=144.6

Q ss_pred             CCceEEEeceeC----C---CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeE
Q psy6542          13 VSKWRVKPPSLK----P---LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        13 ~~~~~V~~a~~~----~---~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      +..++|++|...    .   ....||||.++....+ ...+.+..|+++|+.+. |+||        +.+.+++.+.+.+
T Consensus       307 g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~-~~~~~~~~El~~m~~~g~H~ni--------v~llG~~t~~~~~  377 (609)
T KOG0200|consen  307 GAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS-SEKKDLMSELNVLKELGKHPNI--------VNLLGACTQDGPL  377 (609)
T ss_pred             ccccceEeEEEeecccccccceEEEEEEecccccCc-HHHHHHHHHHHHHHHhcCCcch--------hhheeeeccCCce
Confidence            455678777643    1   2567999999987776 45678889999999985 9999        9999999999999


Q ss_pred             EEEEEccCCC--hhHHhhhh---------hhhhh--HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEe
Q psy6542          85 YIIGVRQSGP--KDQISRSK---------INRYH--KKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHF  151 (334)
Q Consensus        85 ~ivmEy~~g~--l~~l~~~~---------~~~~~--~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiH  151 (334)
                      ++|+||+..|  ++++...+         .....  ......++.++.||+.|++||++..                ++|
T Consensus       378 ~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~----------------~vH  441 (609)
T KOG0200|consen  378 YVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVP----------------CVH  441 (609)
T ss_pred             EEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCC----------------ccc
Confidence            9999999888  45554443         00111  1456667888999999999999999                999


Q ss_pred             eCCCCCceeeCCCCCEEEEecccccccCCCCCCc---ccc--Ccccccccccc--ccCCcceeeh---hHHHHHcCCCCC
Q psy6542         152 RDLKPANILLDEHGHVRISDLGLACDFSKKKPHA---SVE--SDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       152 rDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~~~---~~~--t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~  221 (334)
                      |||-..|||+.++..+||+|||+|+.........   ..+  ...+|+||...  ..+..+|+|+   ++||++..+..|
T Consensus       442 RDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~P  521 (609)
T KOG0200|consen  442 RDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTP  521 (609)
T ss_pred             hhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCC
Confidence            9999999999999999999999999654443222   121  24488898743  3456788888   999999988888


Q ss_pred             CCC
Q psy6542         222 LHP  224 (334)
Q Consensus       222 ~~~  224 (334)
                      +.+
T Consensus       522 Yp~  524 (609)
T KOG0200|consen  522 YPG  524 (609)
T ss_pred             CCC
Confidence            644

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.85  E-value=3.3e-21  Score=166.00  Aligned_cols=138  Identities=12%  Similarity=0.057  Sum_probs=99.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchH------------------------HhhhHHHHHHHHHhcCCCCccccc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESR------------------------VAKWRPYIQEIFNHLRNEPFKKCV   67 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~------------------------~~~~~~~E~~il~~l~h~~i~~~~   67 (334)
                      .++...||+|.+. +|+.||||+++.......                        .......|+++++.+.++++    
T Consensus         7 ~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v----   81 (190)
T cd05147           7 TGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI----   81 (190)
T ss_pred             cccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC----
Confidence            5788899999997 899999999987532110                        01233459999999998876    


Q ss_pred             ccceeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh-hcCCCCCchhhhhhcCC
Q psy6542          68 LLFKMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTC-HSALNKNPLIAIFLTLS  145 (334)
Q Consensus        68 ~~~~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yL-H~~~~~~~~~~~~~~~~  145 (334)
                          ...+.+...  ..+|||||++|+ +....... ..+   +...+..++.|++.+|.|+ |+.+             
T Consensus        82 ----~~p~~~~~~--~~~iVmE~i~g~~l~~~~~~~-~~~---~~~~~~~i~~qi~~~L~~l~H~~g-------------  138 (190)
T cd05147          82 ----PCPEPILLK--SHVLVMEFIGDDGWAAPRLKD-APL---SESKARELYLQVIQIMRILYQDCR-------------  138 (190)
T ss_pred             ----CCCcEEEec--CCEEEEEEeCCCCCcchhhhc-CCC---CHHHHHHHHHHHHHHHHHHHHhCC-------------
Confidence                222222222  238999999987 32221111 122   3455677788999999999 6888             


Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEecccccccCCC
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKK  181 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~  181 (334)
                         |+||||||+|||++ ++.++|+|||+|......
T Consensus       139 ---iiHrDlkP~NIli~-~~~v~LiDFG~a~~~~~~  170 (190)
T cd05147         139 ---LVHADLSEYNLLYH-DGKLYIIDVSQSVEHDHP  170 (190)
T ss_pred             ---cccCCCCHHHEEEE-CCcEEEEEccccccCCCc
Confidence               99999999999998 478999999999755443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.85  E-value=2e-20  Score=163.41  Aligned_cols=184  Identities=23%  Similarity=0.235  Sum_probs=142.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++.+..+++.+|||.+...... ...+.+.+|++.++.++|+|+        +++++.+...+..++++||+
T Consensus         9 ~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~~~~~~~~~i--------~~~~~~~~~~~~~~~v~e~~   79 (225)
T smart00221        9 EGAFGKVYLARDKGTGELVAVKVLKKEKTE-KQREEFLREIRILKKLKHPNI--------VKLYGVFEDPEPLYLVMEYC   79 (225)
T ss_pred             cCCCeEEEEEEEcCCCcEEEEEeeccccch-HHHHHHHHHHHHHHhCCCCCh--------hhheeeeecCCceEEEEecc
Confidence            456779999999999999999999865543 234577889999999999999        99999999889999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .++ +..+.......   ........++.|++.++.|||+.+                ++|+|++|+||+++.++.++|+
T Consensus        80 ~~~~L~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~lh~~~----------------i~h~di~~~ni~v~~~~~~~l~  140 (225)
T smart00221       80 EGGDLFDYLRKKGGK---LSEEEARFYLRQILEALEYLHSLG----------------IVHRDLKPENILLGMDGLVKLA  140 (225)
T ss_pred             CCCCHHHHHHhcccC---CCHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEEcCCCCEEEe
Confidence            996 44333322111   245556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC---CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKK---PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~---~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++.......   .....++..+++|++..  .. ...+|.|+   ++++++. +.+||..
T Consensus       141 d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~-g~~pf~~  202 (225)
T smart00221      141 DFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLW-GPEPFSG  202 (225)
T ss_pred             eCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHH-CCCCccc
Confidence            999998775542   23455677889999752  22 33455555   5566655 7888866

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.84  E-value=1.8e-20  Score=161.44  Aligned_cols=138  Identities=13%  Similarity=0.033  Sum_probs=101.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc------------------------hHHhhhHHHHHHHHHhcCCCCccccc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE------------------------SRVAKWRPYIQEIFNHLRNEPFKKCV   67 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~------------------------~~~~~~~~~E~~il~~l~h~~i~~~~   67 (334)
                      .++..+||+|.+. +|+.||||+++.....                        ......+..|.+.+.++.|+++    
T Consensus         7 ~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i----   81 (190)
T cd05145           7 TGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV----   81 (190)
T ss_pred             cCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence            5788899999988 8999999999976321                        0012234679999999999987    


Q ss_pred             ccceeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCC
Q psy6542          68 LLFKMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLS  145 (334)
Q Consensus        68 ~~~~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~  145 (334)
                          .....+...  ..|+||||++|+ +....... ...   .......++.|++.+|.++|+ .+             
T Consensus        82 ----~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~-~~~---~~~~~~~i~~~l~~~l~~lH~~~g-------------  138 (190)
T cd05145          82 ----PVPEPILLK--KNVLVMEFIGDDGSPAPRLKD-VPL---EEEEAEELYEQVVEQMRRLYQEAG-------------  138 (190)
T ss_pred             ----CCceEEEec--CCEEEEEEecCCCchhhhhhh-ccC---CHHHHHHHHHHHHHHHHHHHHhCC-------------
Confidence                333222222  248999999987 32211111 122   334456677899999999999 99             


Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEecccccccCCC
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKK  181 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~  181 (334)
                         |+||||||+||+++ ++.++|+|||+|+.....
T Consensus       139 ---ivHrDlkP~NIll~-~~~~~liDFG~a~~~~~~  170 (190)
T cd05145         139 ---LVHGDLSEYNILYH-DGKPYIIDVSQAVELDHP  170 (190)
T ss_pred             ---EecCCCChhhEEEE-CCCEEEEEcccceecCCC
Confidence               99999999999998 789999999999876554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0668|consensus

Probab=99.83  E-value=1.2e-20  Score=160.98  Aligned_cols=253  Identities=18%  Similarity=0.162  Sum_probs=165.1

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCC--eEEEEEEccCC
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPN--SHYIIGVRQSG   93 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~--~~~ivmEy~~g   93 (334)
                      .|+-+.+..+++.+.||++++.+     .+.+.+|+.||+.|+ ||||        ++++++..++.  ...+|+||+++
T Consensus        53 EVFeg~~~~~~eK~ViKiLKPVk-----kkKIkREikIL~nL~gg~NI--------i~L~DiV~Dp~SktpaLiFE~v~n  119 (338)
T KOG0668|consen   53 EVFEGINITNNEKCVIKILKPVK-----KKKIKREIKILQNLRGGPNI--------IKLLDIVKDPESKTPSLIFEYVNN  119 (338)
T ss_pred             hHhcccccCCCceEEEeeechHH-----HHHHHHHHHHHHhccCCCCe--------eehhhhhcCccccCchhHhhhhcc
Confidence            68889999999999999999544     345677999999997 9999        99999998764  46799999998


Q ss_pred             C-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-CCEEEEe
Q psy6542          94 P-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-GHVRISD  171 (334)
Q Consensus        94 ~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-~~vkl~D  171 (334)
                      . +..+ -.   .+....   +..++.|++.||.|||+.|                |+|||+||.|++||.. ..++|+|
T Consensus       120 ~Dfk~l-y~---tl~d~d---IryY~~elLkALdyCHS~G----------------ImHRDVKPhNvmIdh~~rkLrlID  176 (338)
T KOG0668|consen  120 TDFKQL-YP---TLTDYD---IRYYIYELLKALDYCHSMG----------------IMHRDVKPHNVMIDHELRKLRLID  176 (338)
T ss_pred             ccHHHH-hh---hhchhh---HHHHHHHHHHHHhHHHhcC----------------cccccCCcceeeechhhceeeeee
Confidence            7 3222 11   222223   3344569999999999999                9999999999999876 4599999


Q ss_pred             cccccccCCCCCCc-cccCcccccccccc--ccCC-cceeeh--hHHHHH-cCCCCCCCCCCCCCcccchhccccccccc
Q psy6542         172 LGLACDFSKKKPHA-SVESDCILHGYIKK--LGGP-FVSAWQ--TRYAKL-FPNRLELHPESGQSKPELIFMDQIEEVSQ  244 (334)
Q Consensus       172 FGla~~~~~~~~~~-~~~t~~~~~~~v~~--~~~~-~~~~w~--~~~~~l-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  244 (334)
                      +|||.....+...+ ...+-++-.||++-  ..|. .-|.||  |+++-| +-..+.|+|.++  .-+++....+.+   
T Consensus       177 WGLAEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN--~DQLVkIakVLG---  251 (338)
T KOG0668|consen  177 WGLAEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDN--YDQLVKIAKVLG---  251 (338)
T ss_pred             cchHhhcCCCceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCC--HHHHHHHHHHhC---
Confidence            99999887776433 34456667788742  2244 456676  555444 455555666663  223322222221   


Q ss_pred             ccccHhHHHHHHHhh-----ccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccc----h-hHHHHHHHHHHhCCC
Q psy6542         245 DLITVKGEQCVQLKL-----TRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHK----C-SQELLGSMARKAGKI  314 (334)
Q Consensus       245 ~~~~~~~~~~i~~~~-----~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r----~-~~~lL~~l~~~~~~~  314 (334)
                             ..-+...+     .-||...-         +   +..-.-+.|..-..+..+    + +.++|+.+.+..++.
T Consensus       252 -------t~el~~Yl~KY~i~Ldp~~~~---------i---~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqe  312 (338)
T KOG0668|consen  252 -------TDELYAYLNKYQIDLDPQFED---------I---LGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQE  312 (338)
T ss_pred             -------hHHHHHHHHHHccCCChhHhh---------H---hhccccccHHHhCCccccccCChHHHHHHHHHHhhcccc
Confidence                   11111111     11111100         0   000012234333322222    3 889999999999998


Q ss_pred             CCCcccccccccccc
Q psy6542         315 YGTTDREKNSILGTR  329 (334)
Q Consensus       315 ~~~~~~~~~~~~~~~  329 (334)
                      +-+++|.-.+|.+.+
T Consensus       313 RlTakEam~HpyF~~  327 (338)
T KOG0668|consen  313 RLTAKEAMAHPYFAP  327 (338)
T ss_pred             ccchHHHhcCchHHH
Confidence            888888777776643

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.83  E-value=4.1e-19  Score=152.26  Aligned_cols=159  Identities=24%  Similarity=0.283  Sum_probs=128.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++.+.||++....+|+.+++|++....... ..+.+.+|+++++.++|+++        +++++++......+++|||+
T Consensus         3 ~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~-~~~~~~~e~~~~~~l~~~~i--------~~~~~~~~~~~~~~~~~e~~   73 (215)
T cd00180           3 EGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-LLEELLREIEILKKLNHPNI--------VKLYGVFEDENHLYLVMEYC   73 (215)
T ss_pred             cCCceEEEEEEecCCCcEEEEEEeccccchh-HHHHHHHHHHHHHhcCCCCe--------eeEeeeeecCCeEEEEEecC
Confidence            4678899999999999999999998665432 34567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-CCCEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-HGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-~~~vkl  169 (334)
                      .|+ +..+.....   ........+.++.+++.+|.+||+.+                ++|+||+|.||+++. ++.++|
T Consensus        74 ~~~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh~~~----------------~~H~dl~~~ni~~~~~~~~~~l  134 (215)
T cd00180          74 EGGSLKDLLKENE---GKLSEDEILRILLQILEGLEYLHSNG----------------IIHRDLKPENILLDSDNGKVKL  134 (215)
T ss_pred             CCCcHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHhCC----------------eeccCCCHhhEEEeCCCCcEEE
Confidence            966 544433221   12245556677889999999999999                999999999999999 899999


Q ss_pred             EecccccccCCCC--CCccccCccccccccc
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIK  198 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~  198 (334)
                      +|||.+.......  .....+...|++|+..
T Consensus       135 ~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  165 (215)
T cd00180         135 ADFGLSKLLTSDKSLLKTIVGTPAYMAPEVL  165 (215)
T ss_pred             ecCCceEEccCCcchhhcccCCCCccChhHh
Confidence            9999998776653  3334456777888764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.83  E-value=1.4e-19  Score=176.64  Aligned_cols=169  Identities=13%  Similarity=0.064  Sum_probs=112.9

Q ss_pred             CCCCceEEEecee----------------CCCCCcEEEEEeeCCCcch------------HHhhhHHHHHHHHHhcCCCC
Q psy6542          11 SRVSKWRVKPPSL----------------KPLGFPIQIGMLRHRPHES------------RVAKWRPYIQEIFNHLRNEP   62 (334)
Q Consensus        11 ~~~~~~~V~~a~~----------------~~~~~~vAIK~l~~~~~~~------------~~~~~~~~E~~il~~l~h~~   62 (334)
                      -+++++.||++..                ...++.||||.+.......            ........|+.++.+++|.+
T Consensus       154 G~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l~~l~~~~  233 (507)
T PLN03224        154 GGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMCAKIKRNP  233 (507)
T ss_pred             ecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHHHHhhccc
Confidence            3578889999864                2345689999987543210            01122334777777887766


Q ss_pred             cccccccceeeEEEEeec--------CCeEEEEEEccCCC-hhHHhhhhhhhh--------------------hHHHHHH
Q psy6542          63 FKKCVLLFKMNLYKVTSE--------PNSHYIIGVRQSGP-KDQISRSKINRY--------------------HKKLRKC  113 (334)
Q Consensus        63 i~~~~~~~~v~~~~~~~~--------~~~~~ivmEy~~g~-l~~l~~~~~~~~--------------------~~~~~~~  113 (334)
                      +.   ...++++.+++..        .+..|+||||++++ +..+.......+                    .......
T Consensus       234 l~---~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~  310 (507)
T PLN03224        234 IA---AASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINV  310 (507)
T ss_pred             ch---hhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHH
Confidence            41   1222555555542        35689999999998 433322211111                    0112344


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCC---CccccCc
Q psy6542         114 FIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP---HASVESD  190 (334)
Q Consensus       114 ~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~---~~~~~t~  190 (334)
                      +..++.|++.||.|||+.+                |+||||||+|||++.++.+||+|||+++.......   ....+++
T Consensus       311 ~~~i~~ql~~aL~~lH~~~----------------ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp  374 (507)
T PLN03224        311 IKGVMRQVLTGLRKLHRIG----------------IVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDP  374 (507)
T ss_pred             HHHHHHHHHHHHHHHHHCC----------------eecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCc
Confidence            5677889999999999999                99999999999999999999999999976544322   1223478


Q ss_pred             cccccccc
Q psy6542         191 CILHGYIK  198 (334)
Q Consensus       191 ~~~~~~v~  198 (334)
                      .|++||+.
T Consensus       375 ~Y~aPE~l  382 (507)
T PLN03224        375 RYSPPEEL  382 (507)
T ss_pred             ceeChhhh
Confidence            89999973

>KOG1345|consensus

Probab=99.83  E-value=9.1e-21  Score=165.19  Aligned_cols=181  Identities=14%  Similarity=0.069  Sum_probs=125.2

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEE-eecCCeEEEEEEc
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKV-TSEPNSHYIIGVR   90 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~-~~~~~~~~ivmEy   90 (334)
                      |-++++.+|+++.+++.+++|.+.....   ..+.|.+|...--.|. |.||        +.-|++ |++-+.+.++|||
T Consensus        35 G~FgkIlL~eHr~s~t~ivlKavp~p~t---t~~dF~rEfhY~~~Ls~H~hI--------i~tY~vaFqt~d~YvF~qE~  103 (378)
T KOG1345|consen   35 GRFGKILLAEHRQSKTRIVLKAVPRPQT---TQADFVREFHYSFFLSPHQHI--------IDTYEVAFQTSDAYVFVQEF  103 (378)
T ss_pred             cceeeEEeeeccCCceEEEeeccCcchh---hHHHHHHHhccceeeccchhh--------hHHHHHHhhcCceEEEeecc
Confidence            4457899999999999999999885443   3456777887655565 7788        777754 6677889999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC--CCCE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE--HGHV  167 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~--~~~v  167 (334)
                      ++-| +..-..  ....   .+.....++.|+++|+.|+|+++                ++|||||.+||||-.  .-.|
T Consensus       104 aP~gdL~snv~--~~Gi---gE~~~K~v~~ql~SAi~fMHskn----------------lVHRdlK~eNiLif~~df~rv  162 (378)
T KOG1345|consen  104 APRGDLRSNVE--AAGI---GEANTKKVFAQLLSAIEFMHSKN----------------LVHRDLKAENILIFDADFYRV  162 (378)
T ss_pred             CccchhhhhcC--cccc---cHHHHHHHHHHHHHHHHHhhccc----------------hhhcccccceEEEecCCccEE
Confidence            9888 411111  1233   33334455669999999999999                999999999999933  3469


Q ss_pred             EEEecccccccCCCCCCccccCccccccccc---c----ccCCcceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKKPHASVESDCILHGYIK---K----LGGPFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       168 kl~DFGla~~~~~~~~~~~~~t~~~~~~~v~---~----~~~~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      ||||||+.+..+...... .....|.+|++.   .    ...+..|+|.  +++.+..+|.+||...+
T Consensus       163 KlcDFG~t~k~g~tV~~~-~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~  229 (378)
T KOG1345|consen  163 KLCDFGLTRKVGTTVKYL-EYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKAS  229 (378)
T ss_pred             EeeecccccccCceehhh-hhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhh
Confidence            999999988665543221 124456666652   1    1245666666  55555566777876443

>KOG1164|consensus

Probab=99.76  E-value=1.4e-17  Score=155.17  Aligned_cols=187  Identities=14%  Similarity=0.115  Sum_probs=135.4

Q ss_pred             CCCCceEEEeceeCCCC-CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCC----CCcccccccceeeEEEEe-ecCCeE
Q psy6542          11 SRVSKWRVKPPSLKPLG-FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRN----EPFKKCVLLFKMNLYKVT-SEPNSH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~-~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h----~~i~~~~~~~~v~~~~~~-~~~~~~   84 (334)
                      ..++.+.||++.+..++ ..+|+|+.........  ..+..|..++..+.+    +++        ..+++.+ ..+...
T Consensus        27 G~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~--~~l~~E~~vl~~l~~~~~~~~~--------~~~~~~G~~~~~~~   96 (322)
T KOG1164|consen   27 GEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKP--SVLKIEIQVLKKLEKKNGPSHF--------PKLLDHGRSTEDFN   96 (322)
T ss_pred             cccCCceEEEEEecCCCCeeEEEEEEEecccCCC--ccchhHHHHHHHHhhhcCCCCC--------CEEEEeccCCCcee
Confidence            35678899999998875 6889999886543211  145569999998873    467        8899999 578889


Q ss_pred             EEEEEccCCChhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          85 YIIGVRQSGPKDQISRSKI-NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        85 ~ivmEy~~g~l~~l~~~~~-~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      ||||+.+..++..+..... +.+   .....+.++.|++.+|.++|+.|                ++||||||+|++++.
T Consensus        97 ~iVM~l~G~sL~dl~~~~~~~~f---s~~T~l~ia~q~l~~l~~lH~~G----------------~iHRDiKp~N~~~g~  157 (322)
T KOG1164|consen   97 FIVMSLLGPSLEDLRKRNPPGRF---SRKTVLRIAIQNLNALEDLHSKG----------------FIHRDIKPENFVVGQ  157 (322)
T ss_pred             EEEEeccCccHHHHHHhCCCCCc---CHhHHHHHHHHHHHHHHHHHhcC----------------cccCCcCHHHeeecC
Confidence            9999999999766654332 344   56667788889999999999999                999999999999987


Q ss_pred             C-----CCEEEEeccccc--ccCCCC----------CCccccCcccccccc-ccccCCcceeehhHHHHH---cCCCCCC
Q psy6542         164 H-----GHVRISDLGLAC--DFSKKK----------PHASVESDCILHGYI-KKLGGPFVSAWQTRYAKL---FPNRLEL  222 (334)
Q Consensus       164 ~-----~~vkl~DFGla~--~~~~~~----------~~~~~~t~~~~~~~v-~~~~~~~~~~w~~~~~~l---~~~~~~~  222 (334)
                      .     ..+.|.|||+|+  .+....          ...+.||..|+++.+ ....-...||+|++++++   ..+.+||
T Consensus       158 ~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW  237 (322)
T KOG1164|consen  158 SSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPW  237 (322)
T ss_pred             CCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCC
Confidence            5     358999999999  321111          123447888888776 344455667766333333   3344777


Q ss_pred             CCCC
Q psy6542         223 HPES  226 (334)
Q Consensus       223 ~~~~  226 (334)
                      .+..
T Consensus       238 ~~~~  241 (322)
T KOG1164|consen  238 EALE  241 (322)
T ss_pred             cccc
Confidence            4444

>KOG0670|consensus

Probab=99.75  E-value=1.5e-18  Score=162.85  Aligned_cols=188  Identities=17%  Similarity=0.158  Sum_probs=133.9

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCChh
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKD   96 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~l~   96 (334)
                      -|-.|.+..-|+.||||+|+.+..   +.+.=+.|++||++|....=..-  .-|+++|-.|...+++|||+|-+.-++.
T Consensus       447 ~Vvra~D~~r~~~vAiKIIRnNE~---M~KtGl~EleiLkKL~~AD~Edk--~Hclrl~r~F~hknHLClVFE~LslNLR  521 (752)
T KOG0670|consen  447 TVVRARDQARGQEVAIKIIRNNEV---MHKTGLKELEILKKLNDADPEDK--FHCLRLFRHFKHKNHLCLVFEPLSLNLR  521 (752)
T ss_pred             eeeeccccCCCCeeEEEEeecchH---HhhhhhHHHHHHHHhhccCchhh--hHHHHHHHHhhhcceeEEEehhhhchHH
Confidence            456777888899999999997665   33333459999999874321000  0128899999999999999999888854


Q ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-CEEEEecccc
Q psy6542          97 QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-HVRISDLGLA  175 (334)
Q Consensus        97 ~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-~vkl~DFGla  175 (334)
                      -++..- +....+....+..++.|+..||..|-..+                |+|.||||+|||++... .+||||||.|
T Consensus       522 evLKKy-G~nvGL~ikaVRsYaqQLflALklLK~c~----------------vlHaDIKPDNiLVNE~k~iLKLCDfGSA  584 (752)
T KOG0670|consen  522 EVLKKY-GRNVGLHIKAVRSYAQQLFLALKLLKKCG----------------VLHADIKPDNILVNESKNILKLCDFGSA  584 (752)
T ss_pred             HHHHHh-CcccceeehHHHHHHHHHHHHHHHHHhcC----------------eeecccCccceEeccCcceeeeccCccc
Confidence            443321 22223344445556679999999999999                99999999999999875 4799999999


Q ss_pred             cccCCCCCCccccCcccccccc-ccccCC-cceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         176 CDFSKKKPHASVESDCILHGYI-KKLGGP-FVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       176 ~~~~~~~~~~~~~t~~~~~~~v-~~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      -.........+.-+-.|-+||+ +...|. +-|.|+   |+||+ +++..-|.|..+
T Consensus       585 ~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYEl-YtGkIlFpG~TN  640 (752)
T KOG0670|consen  585 SFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYEL-YTGKILFPGRTN  640 (752)
T ss_pred             cccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEe-eccceecCCCCc
Confidence            8776665555555667888887 555565 455666   55555 556655666653

>PRK10345 hypothetical protein; Provisional

Probab=99.74  E-value=2.4e-17  Score=143.76  Aligned_cols=129  Identities=16%  Similarity=0.088  Sum_probs=94.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-----CCCCcccccccceeeEEEEeecCC---e
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-----RNEPFKKCVLLFKMNLYKVTSEPN---S   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-----~h~~i~~~~~~~~v~~~~~~~~~~---~   83 (334)
                      .|+...||.  ++.++.. +||++......  ..+.+.+|+++++.+     .||||        +++|++++++.   .
T Consensus        12 ~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~--~~~~~~rEi~~l~~L~~~~~~h~nI--------vr~yg~~et~~g~g~   78 (210)
T PRK10345         12 TGRHRKCYA--HPEDAQR-CIKIVYHRGDG--GDKEIRRELKYYAHLSRRLIDWSGI--------PRYYGTVETDCGTGY   78 (210)
T ss_pred             CCCceEEEE--CCCCcCe-EEEEEeccccc--hHHHHHHHHHHHHHhhccCCCCccc--------ceeeEEEEeCCCCeE
Confidence            577889995  7777766 69998864332  234678899999999     57999        99999999763   4


Q ss_pred             EE-EEEEccC--CC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCc
Q psy6542          84 HY-IIGVRQS--GP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPV-HTCHSALNKNPLIAIFLTLSVPCLHFRDLKPAN  158 (334)
Q Consensus        84 ~~-ivmEy~~--g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L-~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~N  158 (334)
                      ++ +||||+.  ++ +..+....  .+.+.     ..++.|++.++ .|||+++                |+||||||+|
T Consensus        79 v~~~I~e~~G~~~~tL~~~l~~~--~~~e~-----~~~~~~~L~~l~~yLh~~~----------------IvhrDlKp~N  135 (210)
T PRK10345         79 VYDVIADFDGKPSITLTEFAEQC--RYEED-----VAQLRQLLKKLKRYLLDNR----------------IVTMELKPQN  135 (210)
T ss_pred             EEEEEecCCCCcchhHHHHHHcc--cccHh-----HHHHHHHHHHHHHHHHHCC----------------EeecCCCHHH
Confidence            34 7899943  55 55544332  23221     23455888888 9999999                9999999999


Q ss_pred             eeeCCC----CCEEEEeccccc
Q psy6542         159 ILLDEH----GHVRISDLGLAC  176 (334)
Q Consensus       159 iLl~~~----~~vkl~DFGla~  176 (334)
                      ||++..    +.++|+||+-+.
T Consensus       136 ILl~~~~~~~~~~~LiDg~G~~  157 (210)
T PRK10345        136 ILCQRISESEVIPVVCDNIGES  157 (210)
T ss_pred             EEEeccCCCCCcEEEEECCCCc
Confidence            999743    379999955443

>KOG1163|consensus

Probab=99.74  E-value=9.7e-18  Score=144.18  Aligned_cols=184  Identities=13%  Similarity=0.131  Sum_probs=132.8

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCC-cccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEP-FKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~-i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|++-+|+|.+...|..||||+-+....    .-++..|..+...|+|.. |        ..+..++.+..+-.+|||++
T Consensus        26 GSFGdIy~~~~i~~ge~VAiK~Es~~a~----hpqL~yEskvY~iL~~g~Gi--------P~i~~y~~e~~ynvlVMdLL   93 (341)
T KOG1163|consen   26 GSFGDIYLGISITSGEEVAIKLESSKAK----HPQLLYESKVYRILQGGVGI--------PHIRHYGTEKDYNVLVMDLL   93 (341)
T ss_pred             CchhheeeeeeccCCceEEEEeecccCC----CcchhHHHHHHHHhccCCCC--------chhhhhccccccceeeeecc
Confidence            5666789999999999999999875443    235667999999998754 6        77788888888999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC---CCEE
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH---GHVR  168 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~---~~vk  168 (334)
                      ...++.+..-..+.+   ..+.++-++.|++.-++|+|.++                +|||||||+|+|+.-+   ..+.
T Consensus        94 GPsLEdLfnfC~R~f---tmkTvLMLaDQml~RiEyvH~r~----------------fiHRDIKPdNFLMGlgrh~~kl~  154 (341)
T KOG1163|consen   94 GPSLEDLFNFCSRRF---TMKTVLMLADQMLSRIEYVHLRN----------------FIHRDIKPDNFLMGLGRHCNKLY  154 (341)
T ss_pred             CccHHHHHHHHhhhh---hHHhHHHHHHHHHHHHHHHHhhc----------------cccccCCccceeeccccccceEE
Confidence            999766655555566   55666777889999999999999                9999999999999654   4589


Q ss_pred             EEecccccccCCCCCCccc-----cCccccccccc-----cccCCcceee-hhHHHHHc--CCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKPHASV-----ESDCILHGYIK-----KLGGPFVSAW-QTRYAKLF--PNRLELHPESG  227 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~-----~t~~~~~~~v~-----~~~~~~~~~w-~~~~~~l~--~~~~~~~~~~~  227 (334)
                      ++|||||+.+.+..+....     ....+++-|.+     ...-+..||- ++-|.+|+  -+.+||.+...
T Consensus       155 LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka  226 (341)
T KOG1163|consen  155 LIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKA  226 (341)
T ss_pred             EEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccch
Confidence            9999999977655432211     12233333331     1122334444 44444443  46778887754

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.73  E-value=1.3e-17  Score=146.30  Aligned_cols=131  Identities=11%  Similarity=0.085  Sum_probs=98.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhh------HHHHHHHHHhcCCCCcccccccceeeEEEEeec----
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKW------RPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE----   80 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~------~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~----   80 (334)
                      .++..+||++..  ++..+|||+++.... .......      +.+|+..+.++.|++|        ....+++..    
T Consensus        41 ~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI--------~~~~d~~~~~~~~  110 (232)
T PRK10359         41 NIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGL--------ASLNDFYLLAERK  110 (232)
T ss_pred             CCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCC--------CcceEeeeecccc
Confidence            477889999755  477899999986554 2222223      5789999999999999        666665442    


Q ss_pred             ----CCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCC
Q psy6542          81 ----PNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK  155 (334)
Q Consensus        81 ----~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlK  155 (334)
                          .+..++||||++|. +..+.     ..   ..    ....+++.+|..+|+.+                ++|||+|
T Consensus       111 ~~~~~~~~~lvmEyi~G~tL~~~~-----~~---~~----~~~~~i~~~l~~lH~~g----------------i~H~Dik  162 (232)
T PRK10359        111 TLRYAHTYIMLIEYIEGVELNDMP-----EI---SE----DVKAKIKASIESLHQHG----------------MVSGDPH  162 (232)
T ss_pred             cccccCCeEEEEEEECCccHHHhh-----hc---cH----HHHHHHHHHHHHHHHcC----------------CccCCCC
Confidence                34689999999998 42221     11   11    12349999999999999                9999999


Q ss_pred             CCceeeCCCCCEEEEecccccccCCC
Q psy6542         156 PANILLDEHGHVRISDLGLACDFSKK  181 (334)
Q Consensus       156 p~NiLl~~~~~vkl~DFGla~~~~~~  181 (334)
                      |+||+++++| ++|+|||........
T Consensus       163 p~Nili~~~g-i~liDfg~~~~~~e~  187 (232)
T PRK10359        163 KGNFIVSKNG-LRIIDLSGKRCTAQR  187 (232)
T ss_pred             hHHEEEeCCC-EEEEECCCcccccch
Confidence            9999999988 999999988765433

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.72  E-value=6.9e-17  Score=139.24  Aligned_cols=129  Identities=15%  Similarity=-0.006  Sum_probs=98.4

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhcCC-CCcccccccceeeEEEEeecCCeEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHLRN-EPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l~h-~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +|.++..|+.+..  .+..++.+.+.....  .......+.+|+++|++|.| +++        ++++++    +..|++
T Consensus        11 ~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~v--------P~ll~~----~~~~lv   76 (218)
T PRK12274         11 KSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRT--------PRLLHW----DGRHLD   76 (218)
T ss_pred             cCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCC--------CEEEEE----cCEEEE
Confidence            5778889997765  577888887776554  22233357889999999965 668        888875    457999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCC-CCCceeeCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDL-KPANILLDEHG  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDl-Kp~NiLl~~~~  165 (334)
                      |||+.|. +....       .. ..   ..++.|++.+|.++|++|                |+|||| ||+|||++.++
T Consensus        77 meyI~G~~L~~~~-------~~-~~---~~~~~qi~~~L~~lH~~G----------------IvHrDL~kp~NILv~~~g  129 (218)
T PRK12274         77 RSYLAGAAMYQRP-------PR-GD---LAYFRAARRLLQQLHRCG----------------VAHNDLAKEANWLVQEDG  129 (218)
T ss_pred             EeeecCccHHhhh-------hh-hh---HHHHHHHHHHHHHHHHCc----------------CccCCCCCcceEEEcCCC
Confidence            9999988 42110       00 11   234559999999999999                999999 79999999999


Q ss_pred             CEEEEecccccccCC
Q psy6542         166 HVRISDLGLACDFSK  180 (334)
Q Consensus       166 ~vkl~DFGla~~~~~  180 (334)
                      .++|+|||+|.....
T Consensus       130 ~i~LIDFG~A~~~~~  144 (218)
T PRK12274        130 SPAVIDFQLAVRGNP  144 (218)
T ss_pred             CEEEEECCCceecCC
Confidence            999999999985443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.70  E-value=9.5e-18  Score=173.96  Aligned_cols=131  Identities=8%  Similarity=-0.018  Sum_probs=87.0

Q ss_pred             eeEEEEee-------cCCeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcC
Q psy6542          72 MNLYKVTS-------EPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTL  144 (334)
Q Consensus        72 v~~~~~~~-------~~~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~  144 (334)
                      .++++++.       ....++.+|||+++++..++......   .....++.++.||+.||.|||+++            
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~~~~---~~~~~~~~i~~qi~~al~~lH~~g------------  100 (793)
T PLN00181         36 RSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLDNPDRS---VDAFECFHVFRQIVEIVNAAHSQG------------  100 (793)
T ss_pred             HHhhcccCCccccccccchhhhhhccCCccHHHHHhccccc---ccHHHHHHHHHHHHHHHHHHHhCC------------
Confidence            67777762       33467888999988865444332222   355556677889999999999999            


Q ss_pred             CCCcEEeeCCCCCceeeCCC-------------------CCEEEEecccccccCCCC------------------CCccc
Q psy6542         145 SVPCLHFRDLKPANILLDEH-------------------GHVRISDLGLACDFSKKK------------------PHASV  187 (334)
Q Consensus       145 ~~~~iiHrDlKp~NiLl~~~-------------------~~vkl~DFGla~~~~~~~------------------~~~~~  187 (334)
                          |+||||||+|||++..                   +.+|++|||+++......                  .....
T Consensus       101 ----IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (793)
T PLN00181        101 ----IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAM  176 (793)
T ss_pred             ----eeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccC
Confidence                9999999999999654                   445666666665321100                  01135


Q ss_pred             cCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCC
Q psy6542         188 ESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       188 ~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                      ||+.|++||+.. . .+..+|+|+   ++||++. +.+|+
T Consensus       177 gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~-~~~~~  215 (793)
T PLN00181        177 EMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFC-PVSSR  215 (793)
T ss_pred             CCcceEChhhhccCCCCchhhhhhHHHHHHHHhh-CCCch
Confidence            788899999842 2 345677777   6666654 44443

>smart00090 RIO RIO-like kinase

Probab=99.70  E-value=1.7e-16  Score=141.36  Aligned_cols=140  Identities=14%  Similarity=0.052  Sum_probs=98.9

Q ss_pred             CCCceEEEece-eCCCCCcEEEEEeeCCCcc----------------------hHHhhhHHHHHHHHHhcCCCCcccccc
Q psy6542          12 RVSKWRVKPPS-LKPLGFPIQIGMLRHRPHE----------------------SRVAKWRPYIQEIFNHLRNEPFKKCVL   68 (334)
Q Consensus        12 ~~~~~~V~~a~-~~~~~~~vAIK~l~~~~~~----------------------~~~~~~~~~E~~il~~l~h~~i~~~~~   68 (334)
                      .++...||+|. +..+|+.||||+++....+                      ......+..|+++++.+.+..+     
T Consensus        38 ~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~~i-----  112 (237)
T smart00090       38 TGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAGV-----  112 (237)
T ss_pred             cCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence            45677999998 7789999999999865321                      0012345689999999986432     


Q ss_pred             cceeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCC
Q psy6542          69 LFKMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVP  147 (334)
Q Consensus        69 ~~~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~  147 (334)
                       ...+.++.    ...++||||++|+ +....... ...   .......++.|++.+|.+||+.+.              
T Consensus       113 -~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~-~~~---~~~~~~~i~~qi~~~l~~LH~~g~--------------  169 (237)
T smart00090      113 -PVPKPIAW----RRNVLVMEFIGGDGLPAPRLKD-VEP---EEEEEFELYDDILEEMRKLYKEGE--------------  169 (237)
T ss_pred             -CCCeeeEe----cCceEEEEEecCCccccccccc-CCc---chHHHHHHHHHHHHHHHHHHhcCC--------------
Confidence             00344432    2358999999997 32221111 111   233345667799999999999862              


Q ss_pred             cEEeeCCCCCceeeCCCCCEEEEecccccccCCC
Q psy6542         148 CLHFRDLKPANILLDEHGHVRISDLGLACDFSKK  181 (334)
Q Consensus       148 ~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~  181 (334)
                       ++||||||+||+++ ++.++|+|||+|......
T Consensus       170 -iiH~Dikp~NIli~-~~~i~LiDFg~a~~~~~~  201 (237)
T smart00090      170 -LVHGDLSEYNILVH-DGKVVIIDVSQSVELDHP  201 (237)
T ss_pred             -EEeCCCChhhEEEE-CCCEEEEEChhhhccCCc
Confidence             99999999999999 789999999998755544

>KOG1165|consensus

Probab=99.70  E-value=3e-16  Score=140.62  Aligned_cols=186  Identities=15%  Similarity=0.108  Sum_probs=140.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+|++-++.+.+.-+|++||||.-......    -++..|....+.|. .+.|        .+.|-+...+.+-.+|||+
T Consensus        38 eGsFG~lf~G~Nl~nne~VAIKfEPrkS~A----PQLrdEYr~YKlL~g~~GI--------P~vYYFGqeG~~NiLVidL  105 (449)
T KOG1165|consen   38 EGSFGVLFLGKNLYNNEPVAIKFEPRKSEA----PQLRDEYRTYKLLGGTEGI--------PQVYYFGQEGKYNILVIDL  105 (449)
T ss_pred             cCcceeeecccccccCceEEEEeccccCCc----chHHHHHHHHHHHcCCCCC--------Cceeeeccccchhhhhhhh
Confidence            478889999999999999999987654442    24556888888886 4678        8999899888889999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-----
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-----  165 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-----  165 (334)
                      +...++.+..-..+.|   ..+.++.++.|++.-++|+|++.                +|.|||||+|+||...+     
T Consensus       106 LGPSLEDLFD~CgR~F---SvKTV~miA~Qmi~rie~vH~k~----------------LIYRDIKPdNFLIGrp~~k~~n  166 (449)
T KOG1165|consen  106 LGPSLEDLFDLCGRRF---SVKTVAMIAKQMITRIEYVHEKD----------------LIYRDIKPDNFLIGRPGTKDAN  166 (449)
T ss_pred             hCcCHHHHHHHhcCcc---cHHhHHHHHHHHHHHHHHHHhcc----------------eeecccCccceeecCCCCCCCc
Confidence            9999777767666777   55666677789999999999999                99999999999997643     


Q ss_pred             CEEEEecccccccCCCCCCcc-----ccCcccccccc-----ccccCCcceeeh---hHHHHHcCCCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHAS-----VESDCILHGYI-----KKLGGPFVSAWQ---TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~-----~~t~~~~~~~v-----~~~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~  228 (334)
                      .+.++|||+|+...+..+...     ..+..+++-|+     +...-+..||.-   =+|.|+.-+.+||.|....
T Consensus       167 ~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~  242 (449)
T KOG1165|consen  167 VIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAD  242 (449)
T ss_pred             eEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCc
Confidence            489999999998866543211     12344444554     223334556655   4456666788899887654

>KOG1167|consensus

Probab=99.69  E-value=6.8e-17  Score=148.58  Aligned_cols=181  Identities=14%  Similarity=0.091  Sum_probs=134.1

Q ss_pred             CCCceEEEeceeCC---CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKP---LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~---~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .+++--||+|.+..   ....||+|.+.......    +..+|+++|..+. +.||        +++.+.+..++...+|
T Consensus        46 eGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~----ri~~El~~L~~~gG~~ni--------~~~~~~~rnnd~v~iv  113 (418)
T KOG1167|consen   46 EGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPS----RILNELEMLYRLGGSDNI--------IKLNGCFRNNDQVAIV  113 (418)
T ss_pred             ccchhhhhhhhHhhhccccceEeeeecccccCch----HHHHHHHHHHHhccchhh--------hcchhhhccCCeeEEE
Confidence            35556788888887   88899999999777643    3567999999986 6778        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-C
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-G  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-~  165 (334)
                      |||.++. ...+...    +   ....+..++..++.||.++|.+|                |||||+||.|+|.+.. +
T Consensus       114 lp~~~H~~f~~l~~~----l---~~~~i~~Yl~~ll~Al~~~h~~G----------------IvHRDiKpsNFL~n~~t~  170 (418)
T KOG1167|consen  114 LPYFEHDRFRDLYRS----L---SLAEIRWYLRNLLKALAHLHKNG----------------IVHRDIKPSNFLYNRRTQ  170 (418)
T ss_pred             ecccCccCHHHHHhc----C---CHHHHHHHHHHHHHHhhhhhccC----------------ccccCCCccccccccccC
Confidence            9999998 4333222    2   23344455669999999999999                9999999999999887 5


Q ss_pred             CEEEEeccccccc-----------------CC--CC---------------------------CCccccCcccccccccc
Q psy6542         166 HVRISDLGLACDF-----------------SK--KK---------------------------PHASVESDCILHGYIKK  199 (334)
Q Consensus       166 ~vkl~DFGla~~~-----------------~~--~~---------------------------~~~~~~t~~~~~~~v~~  199 (334)
                      .-.|+|||||...                 ..  +.                           .....||+.+-+||++.
T Consensus       171 rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~  250 (418)
T KOG1167|consen  171 RGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLF  250 (418)
T ss_pred             CceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHh
Confidence            5789999999721                 00  00                           01235677778888853


Q ss_pred             ---ccCCcceeeh--hHHHHHcCCCCCCCCCCC
Q psy6542         200 ---LGGPFVSAWQ--TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       200 ---~~~~~~~~w~--~~~~~l~~~~~~~~~~~~  227 (334)
                         ..++..|+|+  +++-.+.+...||+-..+
T Consensus       251 k~~~QttaiDiws~GVI~Lslls~~~PFf~a~d  283 (418)
T KOG1167|consen  251 RCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKD  283 (418)
T ss_pred             hccCcCCccceeeccceeehhhccccccccCcc
Confidence               3467889999  444455566666655443

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.69  E-value=3.7e-16  Score=136.40  Aligned_cols=132  Identities=18%  Similarity=0.129  Sum_probs=100.9

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc------chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH------ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~------~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      ..++...||+|..  +|..|+||+......      .......+.+|++++..+.|+++        .....++...+..
T Consensus         5 ~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i--------~~p~~~~~~~~~~   74 (211)
T PRK14879          5 KRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGV--------NVPAVYFVDPENF   74 (211)
T ss_pred             ccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCeEEEEeCCCC
Confidence            3577889999986  678899998765432      11123467789999999999987        5555555566778


Q ss_pred             EEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          85 YIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +++|||++|+ +..+....    .   . ....++.+++.+|.++|+.+                ++|+|++|+||+++ 
T Consensus        75 ~lv~e~~~G~~L~~~~~~~----~---~-~~~~i~~~i~~~l~~lH~~~----------------i~H~Dl~p~Nil~~-  129 (211)
T PRK14879         75 IIVMEYIEGEPLKDLINSN----G---M-EELELSREIGRLVGKLHSAG----------------IIHGDLTTSNMILS-  129 (211)
T ss_pred             EEEEEEeCCcCHHHHHHhc----c---H-HHHHHHHHHHHHHHHHHhCC----------------cccCCCCcccEEEE-
Confidence            9999999988 43332211    1   1 44566779999999999999                99999999999999 


Q ss_pred             CCCEEEEecccccc
Q psy6542         164 HGHVRISDLGLACD  177 (334)
Q Consensus       164 ~~~vkl~DFGla~~  177 (334)
                      ++.++|+|||+++.
T Consensus       130 ~~~~~liDf~~a~~  143 (211)
T PRK14879        130 GGKIYLIDFGLAEF  143 (211)
T ss_pred             CCCEEEEECCcccC
Confidence            78899999999865

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.69  E-value=9.2e-16  Score=139.27  Aligned_cols=187  Identities=19%  Similarity=0.187  Sum_probs=139.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchH-HhhhHHHHHHHHHhcCCC-CcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESR-VAKWRPYIQEIFNHLRNE-PFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~-~~~~~~~E~~il~~l~h~-~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .++...||++.+.   ..+|+|.+........ ....+.+|..++..+.|+ ++        +.+++.+......+++++
T Consensus        10 ~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i--------~~~~~~~~~~~~~~~~~~   78 (384)
T COG0515          10 EGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNI--------VKLYDFFQDEGSLYLVME   78 (384)
T ss_pred             CCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcce--------eeEEEEEecCCEEEEEEe
Confidence            4556889999888   7899999998766442 566788899999999999 69        999999988888999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-CE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-HV  167 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-~v  167 (334)
                      |+.|+ +..+....... ..........++.|++.++.|+|+.+                ++|||+||+||+++..+ .+
T Consensus        79 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~H~~~----------------~~hrd~kp~nil~~~~~~~~  141 (384)
T COG0515          79 YVDGGSLEDLLKKIGRK-GPLSESEALFILAQILSALEYLHSKG----------------IIHRDIKPENILLDRDGRVV  141 (384)
T ss_pred             cCCCCcHHHHHHhcccc-cCCCHHHHHHHHHHHHHHHHHHHhCC----------------eeccCCCHHHeeecCCCCeE
Confidence            99998 43222221100 12244455566779999999999999                99999999999999998 69


Q ss_pred             EEEecccccccCCCC--------CCccccCccccccccccc----cCC-cceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKK--------PHASVESDCILHGYIKKL----GGP-FVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       168 kl~DFGla~~~~~~~--------~~~~~~t~~~~~~~v~~~----~~~-~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      +++|||+++.+....        .....|+..|++|+....    .+. ..|.|+  +....+..+..|+....
T Consensus       142 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~  215 (384)
T COG0515         142 KLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEK  215 (384)
T ss_pred             EEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999998665443        245678999999997532    344 555554  34444555565655544

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.68  E-value=2.8e-16  Score=136.15  Aligned_cols=135  Identities=15%  Similarity=0.009  Sum_probs=98.7

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcch--------------------HHhhhHHHHHHHHHhcCCCCcccccccc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHES--------------------RVAKWRPYIQEIFNHLRNEPFKKCVLLF   70 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~--------------------~~~~~~~~E~~il~~l~h~~i~~~~~~~   70 (334)
                      ..++.++||++... +|+.||||+++......                    ........|..++..+.|+++      .
T Consensus        24 ~~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i------~   96 (198)
T cd05144          24 GVGKESDVYLALDP-DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF------P   96 (198)
T ss_pred             ccCcceEEEEEEcC-CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC------C
Confidence            46777899999875 79999999987643100                    011235678999999988753      0


Q ss_pred             eeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcE
Q psy6542          71 KMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCL  149 (334)
Q Consensus        71 ~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~i  149 (334)
                      +...++    ....++||||++|+ +..+...          .....++.+++.++.++|+.+                +
T Consensus        97 v~~~~~----~~~~~lv~e~~~g~~L~~~~~~----------~~~~~~~~~i~~~l~~lh~~g----------------i  146 (198)
T cd05144          97 VPKPID----WNRHAVVMEYIDGVELYRVRVL----------EDPEEVLDEILEEIVKAYKHG----------------I  146 (198)
T ss_pred             CCceee----cCCceEEEEEeCCcchhhcccc----------ccHHHHHHHHHHHHHHHHHCC----------------C
Confidence            144443    24568999999998 4322110          112345569999999999999                9


Q ss_pred             EeeCCCCCceeeCCCCCEEEEecccccccCCCC
Q psy6542         150 HFRDLKPANILLDEHGHVRISDLGLACDFSKKK  182 (334)
Q Consensus       150 iHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~  182 (334)
                      +||||||+||+++.++.++|+|||+|.......
T Consensus       147 ~H~Dl~p~Nill~~~~~~~liDfg~~~~~~~~~  179 (198)
T cd05144         147 IHGDLSEFNILVDDDEKIYIIDWPQMVSTDHPN  179 (198)
T ss_pred             CcCCCCcccEEEcCCCcEEEEECCccccCCCcc
Confidence            999999999999999999999999997666543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.68  E-value=5.6e-16  Score=134.05  Aligned_cols=130  Identities=13%  Similarity=0.079  Sum_probs=96.4

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc--c----hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH--E----SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~--~----~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      .+++.+.||++.  .+|..|++|.......  +    .....++.+|+++++.++|+++        ....-++...+..
T Consensus         3 g~G~~~~vy~~~--~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i--------~~p~~~~~~~~~~   72 (199)
T TIGR03724         3 AKGAEAIIYLGD--FLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGV--------NTPVVYDVDPDNK   72 (199)
T ss_pred             CCCceEEEEEee--cCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCEEEEEECCCC
Confidence            367889999998  4678999999664332  1    1123467789999999999875        3222233455667


Q ss_pred             EEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          85 YIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      ++||||++|+ +..+....       ..    .++.|++.+|.+||+.+                ++|+|++|+||+++ 
T Consensus        73 ~lv~e~~~g~~l~~~~~~~-------~~----~~~~~i~~~l~~lH~~g----------------i~H~Dl~~~Nil~~-  124 (199)
T TIGR03724        73 TIVMEYIEGKPLKDVIEEG-------ND----ELLREIGRLVGKLHKAG----------------IVHGDLTTSNIIVR-  124 (199)
T ss_pred             EEEEEEECCccHHHHHhhc-------HH----HHHHHHHHHHHHHHHCC----------------eecCCCCcceEEEE-
Confidence            8999999988 32221111       00    45669999999999999                99999999999999 


Q ss_pred             CCCEEEEeccccccc
Q psy6542         164 HGHVRISDLGLACDF  178 (334)
Q Consensus       164 ~~~vkl~DFGla~~~  178 (334)
                      ++.++++|||+++..
T Consensus       125 ~~~~~liDfg~a~~~  139 (199)
T TIGR03724       125 DDKLYLIDFGLGKYS  139 (199)
T ss_pred             CCcEEEEECCCCcCC
Confidence            789999999998753

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0603|consensus

Probab=99.67  E-value=1.7e-17  Score=159.60  Aligned_cols=214  Identities=16%  Similarity=0.171  Sum_probs=158.8

Q ss_pred             eceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEccCCChhHH
Q psy6542          20 PPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQI   98 (334)
Q Consensus        20 ~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~l~~l   98 (334)
                      ++.....|..+|+|++++.........+...|-.++..++ ||.+        |+++..++.+..+|++++|..|+..+.
T Consensus        15 k~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~--------v~lhyafqt~~kl~l~ld~~rgg~lft   86 (612)
T KOG0603|consen   15 KAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFL--------VKLHYAFQTDGKLYLILDFLRGGDLFT   86 (612)
T ss_pred             HhccccccchhhhhcccccccccccccccccHHHHHhhccCCCce--------eeeeeeeccccchhHhhhhcccchhhh
Confidence            4445678899999999988763333446667899999998 8889        999999999999999999999984444


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccccc
Q psy6542          99 SRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDF  178 (334)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~  178 (334)
                      .......+.+...+.+..   +++.+++.+|+.+                ++|||+|++||+++.+|++++.|||+.+..
T Consensus        87 ~l~~~~~f~~~~~~~~~a---elaLald~lh~l~----------------iiyrd~k~enilld~~Ghi~~tdfglske~  147 (612)
T KOG0603|consen   87 RLSKEVMFDELDVAFYLA---ELALALDHLHKLG----------------IAYRDYKLENVLLLLEGHIKLTDFGLSKEA  147 (612)
T ss_pred             ccccCCchHHHHHHHHHH---HHHHHHhhcchhH----------------HHHhcccccceeecccCccccCCchhhhHh
Confidence            344444555555555544   9999999999999                999999999999999999999999999976


Q ss_pred             CCCCCCccccCccccccccccccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccccccccccHhHHHH
Q psy6542         179 SKKKPHASVESDCILHGYIKKLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQC  254 (334)
Q Consensus       179 ~~~~~~~~~~t~~~~~~~v~~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  254 (334)
                      -.....  |||..||+||+.. ++..+.|||    +.|+++. +..||.++    ....|....+ ..+..++. .+...
T Consensus       148 v~~~~~--cgt~eymApEI~~-gh~~a~D~ws~gvl~fellt-g~~pf~~~----~~~~Il~~~~-~~p~~l~~-~a~~~  217 (612)
T KOG0603|consen  148 VKEKIA--CGTYEYRAPEIIN-GHLSAADWWSFGVLAFELLT-GTLPFGGD----TMKRILKAEL-EMPRELSA-EARSL  217 (612)
T ss_pred             Hhhhhc--ccchhhhhhHhhh-ccCCcccchhhhhhHHHHhh-CCCCCchH----HHHHHhhhcc-CCchhhhH-HHHHH
Confidence            555433  8999999999977 888899999    4677755 45566551    1222222122 23333332 34455


Q ss_pred             HHHhhccCchhhcCCC
Q psy6542         255 VQLKLTRDTRIVLTNP  270 (334)
Q Consensus       255 i~~~~~~~p~~r~~~~  270 (334)
                      +.....++|..|+...
T Consensus       218 ~~~l~~r~p~nrLg~~  233 (612)
T KOG0603|consen  218 FRQLFKRNPENRLGAG  233 (612)
T ss_pred             HHHHHhhCHHHHhccC
Confidence            5555577888888764

>KOG0590|consensus

Probab=99.64  E-value=7.8e-17  Score=160.54  Aligned_cols=182  Identities=20%  Similarity=0.162  Sum_probs=128.9

Q ss_pred             EEEeceeCCCCCcEEEEEee----CCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          17 RVKPPSLKPLGFPIQIGMLR----HRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~----~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      .|+.+.....+..++.|..+    ....+......+..|+.+-..++|+|+        +.....+.+....+-+||||+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~--------~e~l~~~~~~~~~~~~mE~~~  404 (601)
T KOG0590|consen  333 SVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNI--------IETLDIVQEIDGILQSMEYCP  404 (601)
T ss_pred             ceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCch--------hhhHHHHhhcccchhhhhccc
Confidence            46666666666666666554    222233333346778888999999998        665555555555555699999


Q ss_pred             CChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEec
Q psy6542          93 GPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDL  172 (334)
Q Consensus        93 g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DF  172 (334)
                      +++--+.... ..+......+++.   |++.|+.|+|+.|                |.|||+||+|+++..+|.+||+||
T Consensus       405 ~Dlf~~~~~~-~~~~~~e~~c~fK---qL~~Gv~y~h~~G----------------iahrdlK~enll~~~~g~lki~Df  464 (601)
T KOG0590|consen  405 YDLFSLVMSN-GKLTPLEADCFFK---QLLRGVKYLHSMG----------------LAHRDLKLENLLVTENGILKIIDF  464 (601)
T ss_pred             HHHHHHHhcc-cccchhhhhHHHH---HHHHHHHHHHhcC----------------ceeccCccccEEEecCCceEEeec
Confidence            9521122221 2445556666666   9999999999999                999999999999999999999999


Q ss_pred             ccccccCCCC------CCccccCccccccccc---cccCCcceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         173 GLACDFSKKK------PHASVESDCILHGYIK---KLGGPFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       173 Gla~~~~~~~------~~~~~~t~~~~~~~v~---~~~~~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      |.+..+....      ....+|+..|++||+.   .....+.|+|+  ++|..|..++.||....
T Consensus       465 g~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~  529 (601)
T KOG0590|consen  465 GAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAK  529 (601)
T ss_pred             CcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCcccccc
Confidence            9998664433      3456788889999984   33355788888  56667777788876554

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.62  E-value=3.8e-15  Score=147.96  Aligned_cols=129  Identities=14%  Similarity=0.079  Sum_probs=95.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCC--Cc----chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHR--PH----ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~--~~----~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++...||++.....  .+++|.....  ..    ......++.+|+++++.++|+++        +....+..+....+
T Consensus       343 ~G~~g~Vy~~~~~~~--~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i--------~~p~~~~~~~~~~~  412 (535)
T PRK09605        343 KGAEADIKKGEYLGR--DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGV--------PTPVIYDVDPEEKT  412 (535)
T ss_pred             cCCcEEEEEEeecCc--cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCC--------CeeEEEEEeCCCCE
Confidence            667789999876543  3444443221  11    11233567889999999999998        66666666667789


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +.....            ....++.|++.+|.|||+.+                ++|||+||+|||+ ++
T Consensus       413 lv~E~~~g~~L~~~l~------------~~~~~~~~i~~~L~~lH~~g----------------iiHrDlkp~NILl-~~  463 (535)
T PRK09605        413 IVMEYIGGKDLKDVLE------------GNPELVRKVGEIVAKLHKAG----------------IVHGDLTTSNFIV-RD  463 (535)
T ss_pred             EEEEecCCCcHHHHHH------------HHHHHHHHHHHHHHHHHhCC----------------CccCCCChHHEEE-EC
Confidence            999999998 422211            12345669999999999999                9999999999999 67


Q ss_pred             CCEEEEecccccccC
Q psy6542         165 GHVRISDLGLACDFS  179 (334)
Q Consensus       165 ~~vkl~DFGla~~~~  179 (334)
                      +.++|+|||+++...
T Consensus       464 ~~~~liDFGla~~~~  478 (535)
T PRK09605        464 DRLYLIDFGLGKYSD  478 (535)
T ss_pred             CcEEEEeCcccccCC
Confidence            889999999997643

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.62  E-value=3.4e-15  Score=127.80  Aligned_cols=138  Identities=19%  Similarity=0.100  Sum_probs=93.7

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhh----------------------hHHHHHHHHHhcCCCCcccccc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAK----------------------WRPYIQEIFNHLRNEPFKKCVL   68 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~----------------------~~~~E~~il~~l~h~~i~~~~~   68 (334)
                      ..++...||+|.+. +|+.||||+++..........                      ....|.+.+..+.+..+     
T Consensus         6 g~G~~g~Vy~a~~~-~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~-----   79 (187)
T cd05119           6 GTGKEADVYLALDG-DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGV-----   79 (187)
T ss_pred             ccccceeEEEEECC-CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCC-----
Confidence            35788899999987 799999999886543111111                      11356666666655432     


Q ss_pred             cceeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCC
Q psy6542          69 LFKMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSV  146 (334)
Q Consensus        69 ~~~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~  146 (334)
                       .+.+.+..    ...++||||++|+ ........   ...  ......++.|++.++.++|. .+              
T Consensus        80 -~~~~~~~~----~~~~lv~e~~~g~~~~~~~l~~---~~~--~~~~~~~~~~~~~~l~~lh~~~~--------------  135 (187)
T cd05119          80 -PVPKPIDL----NRHVLVMEFIGGDGIPAPRLKD---VRL--LEDPEELYDQILELMRKLYREAG--------------  135 (187)
T ss_pred             -CCCceEec----CCCEEEEEEeCCCCccChhhhh---hhh--cccHHHHHHHHHHHHHHHhhccC--------------
Confidence             01344433    2358999999995 11100111   111  03345666799999999999 88              


Q ss_pred             CcEEeeCCCCCceeeCCCCCEEEEecccccccCCC
Q psy6542         147 PCLHFRDLKPANILLDEHGHVRISDLGLACDFSKK  181 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~  181 (334)
                        |+||||||+||+++ ++.++|+|||.+......
T Consensus       136 --ivH~Dl~p~Nili~-~~~~~liDfg~a~~~~~~  167 (187)
T cd05119         136 --LVHGDLSEYNILVD-DGKVYIIDVPQAVEIDHP  167 (187)
T ss_pred             --cCcCCCChhhEEEE-CCcEEEEECcccccccCc
Confidence              99999999999999 899999999999766553

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.59  E-value=1.3e-14  Score=129.46  Aligned_cols=133  Identities=16%  Similarity=0.105  Sum_probs=92.5

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-----------chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-----------ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS   79 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-----------~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~   79 (334)
                      .|++.|+|+..     +..++||.......           +.....++.+|++++..|+|+++      .++..+++..
T Consensus        44 g~gtv~~v~~~-----~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi------~vP~pl~~~~  112 (239)
T PRK01723         44 GRGTTWFVQTP-----GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGL------PVPRPIAARV  112 (239)
T ss_pred             CCccEEEEEeC-----CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCC------CCceeEeeee
Confidence            46677777664     67899998864221           11233567889999999999875      0144444433


Q ss_pred             c-CC---eEEEEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeC
Q psy6542          80 E-PN---SHYIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRD  153 (334)
Q Consensus        80 ~-~~---~~~ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrD  153 (334)
                      . ..   ..++||||++|+  +..+....  .+   ...    .+.|++.+|.+||++|                |+|||
T Consensus       113 ~~~~~~~~~~lV~e~l~G~~~L~~~l~~~--~l---~~~----~~~~i~~~l~~lH~~G----------------I~HrD  167 (239)
T PRK01723        113 VRHGLFYRADILIERIEGARDLVALLQEA--PL---SEE----QWQAIGQLIARFHDAG----------------VYHAD  167 (239)
T ss_pred             eecCcceeeeEEEEecCCCCCHHHHHhcC--CC---CHH----HHHHHHHHHHHHHHCC----------------CCCCC
Confidence            2 22   235999999984  43332221  11   122    1348999999999999                99999


Q ss_pred             CCCCceeeCCCCCEEEEecccccccC
Q psy6542         154 LKPANILLDEHGHVRISDLGLACDFS  179 (334)
Q Consensus       154 lKp~NiLl~~~~~vkl~DFGla~~~~  179 (334)
                      |||+|||++.++.++|+|||.++...
T Consensus       168 lkp~NILv~~~~~v~LIDfg~~~~~~  193 (239)
T PRK01723        168 LNAHNILLDPDGKFWLIDFDRGELRT  193 (239)
T ss_pred             CCchhEEEcCCCCEEEEECCCcccCC
Confidence            99999999999999999999987543

>KOG1290|consensus

Probab=99.56  E-value=1.2e-14  Score=135.94  Aligned_cols=126  Identities=13%  Similarity=0.020  Sum_probs=95.5

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCC--CcccccccceeeEEEEee----cCCeEEE
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNE--PFKKCVLLFKMNLYKVTS----EPNSHYI   86 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~--~i~~~~~~~~v~~~~~~~----~~~~~~i   86 (334)
                      +-+=-||+|++..+.+.||+|+.+...+   ..+....|+.+|++++..  +-  ..--.+|+++|.|.    .+.++||
T Consensus        89 GHFSTVWLawDtq~~r~VAlKVvKSAqh---YtEaAlDEIklL~~v~~~Dp~~--~~~~~VV~LlD~FkhsGpNG~HVCM  163 (590)
T KOG1290|consen   89 GHFSTVWLAWDTQNKRYVALKVVKSAQH---YTEAALDEIKLLQQVREGDPND--PGKKCVVQLLDHFKHSGPNGQHVCM  163 (590)
T ss_pred             cccceeEEEeeccCCeEEEEEEEehhhH---HHHHHHHHHHHHHHHHhcCCCC--CCCceeeeeeccceecCCCCcEEEE
Confidence            3344799999999999999999997665   223344599999987521  11  00012399999988    4568999


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      |+|++... +..|+.+..+..   +...+..|+.|++.||.|||.+.               .|||-||||+|||+
T Consensus       164 VfEvLGdnLLklI~~s~YrGl---pl~~VK~I~~qvL~GLdYLH~ec---------------gIIHTDlKPENvLl  221 (590)
T KOG1290|consen  164 VFEVLGDNLLKLIKYSNYRGL---PLSCVKEICRQVLTGLDYLHREC---------------GIIHTDLKPENVLL  221 (590)
T ss_pred             EehhhhhHHHHHHHHhCCCCC---cHHHHHHHHHHHHHHHHHHHHhc---------------CccccCCCcceeee
Confidence            99999988 556666555444   66677788889999999999865               19999999999999

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.56  E-value=3.7e-14  Score=115.71  Aligned_cols=129  Identities=20%  Similarity=0.115  Sum_probs=99.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCC--CcccccccceeeEEEEeecCCeEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNE--PFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~--~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      ..++...||++....  ..++||.......    ...+.+|+.+++.++|.  ++        ++++.+...++..|++|
T Consensus         7 ~~g~~~~v~~~~~~~--~~~~iK~~~~~~~----~~~~~~e~~~~~~l~~~~~~~--------p~~~~~~~~~~~~~~v~   72 (155)
T cd05120           7 KGGLTNRVYLLGTKD--EDYVLKINPSREK----GADREREVAILQLLARKGLPV--------PKVLASGESDGWSYLLM   72 (155)
T ss_pred             ccccccceEEEEecC--CeEEEEecCCCCc----hhHHHHHHHHHHHHHHcCCCC--------CeEEEEcCCCCccEEEE
Confidence            456677888888754  7899999875443    34577899999999874  67        88888888888899999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||+.|+ +..+           .......++.+++.+|.++|....             +.++|+|++|+||++++.+.+
T Consensus        73 e~~~g~~~~~~-----------~~~~~~~~~~~~~~~l~~lh~~~~-------------~~i~H~Dl~~~Nil~~~~~~~  128 (155)
T cd05120          73 EWIEGETLDEV-----------SEEEKEDIAEQLAELLAKLHQLPL-------------LVLCHGDLHPGNILVDDGKIL  128 (155)
T ss_pred             EecCCeecccC-----------CHHHHHHHHHHHHHHHHHHhCCCc-------------eEEEecCCCcceEEEECCcEE
Confidence            999988 3211           111122345589999999998531             129999999999999998999


Q ss_pred             EEEecccccc
Q psy6542         168 RISDLGLACD  177 (334)
Q Consensus       168 kl~DFGla~~  177 (334)
                      +++|||+++.
T Consensus       129 ~l~Df~~~~~  138 (155)
T cd05120         129 GIIDWEYAGY  138 (155)
T ss_pred             EEEecccccC
Confidence            9999999864

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG4158|consensus

Probab=99.55  E-value=2.2e-14  Score=131.56  Aligned_cols=165  Identities=18%  Similarity=0.139  Sum_probs=106.0

Q ss_pred             CeEEEEEEccCCChhH-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCcee
Q psy6542          82 NSHYIIGVRQSGPKDQ-ISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANIL  160 (334)
Q Consensus        82 ~~~~ivmEy~~g~l~~-l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiL  160 (334)
                      ..+|+||.-.+..+.. +..+.   .   ......-++.|+++|+.|||.+|                |.|||+|.+|||
T Consensus       316 ~tlylvMkrY~~tLr~yl~~~~---~---s~r~~~~~laQlLEav~hL~~hg----------------vAhRDlKSDNiL  373 (598)
T KOG4158|consen  316 KTLYLVMKRYRQTLREYLWTRH---R---SYRTGRVILAQLLEAVTHLHKHG----------------VAHRDLKSDNIL  373 (598)
T ss_pred             ceEEEehhcchhhHHHHHhcCC---C---chHHHHHHHHHHHHHHHHHHHcc----------------chhhcccccceE
Confidence            3579999866666432 32222   1   12222345679999999999999                999999999999


Q ss_pred             e--CCCC--CEEEEecccccccCCCC--------CCccccCccccccccc--------cccCCcceeeh---hHHHHHcC
Q psy6542         161 L--DEHG--HVRISDLGLACDFSKKK--------PHASVESDCILHGYIK--------KLGGPFVSAWQ---TRYAKLFP  217 (334)
Q Consensus       161 l--~~~~--~vkl~DFGla~~~~~~~--------~~~~~~t~~~~~~~v~--------~~~~~~~~~w~---~~~~~l~~  217 (334)
                      +  ++|+  .+.|+|||.|-.-....        ....-|..+.|+||+.        ...|..+|.|.   +.||. ++
T Consensus       374 ~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEI-fg  452 (598)
T KOG4158|consen  374 LELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEI-FG  452 (598)
T ss_pred             EEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHH-hc
Confidence            9  4443  37899999885332211        1122346778999983        34478899999   66666 55


Q ss_pred             CCCCCCCCCCCCcccc-hhcccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         218 NRLELHPESGQSKPEL-IFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       218 ~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ..-||++....-...- ....++...+ +..+....+.+...+.+||.+|....
T Consensus       453 ~~NPFY~rGem~L~~r~Yqe~qLPalp-~~vpp~~rqlV~~lL~r~pskRvsp~  505 (598)
T KOG4158|consen  453 RSNPFYKRGEMLLDTRTYQESQLPALP-SRVPPVARQLVFDLLKRDPSKRVSPN  505 (598)
T ss_pred             cCCcccccchheechhhhhhhhCCCCc-ccCChHHHHHHHHHhcCCccccCCcc
Confidence            6668888543221111 2222333333 44444567777778889999998865

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.47  E-value=4.3e-13  Score=121.39  Aligned_cols=201  Identities=15%  Similarity=0.136  Sum_probs=112.1

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCC---CCc----ccccccce-eeE------E
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRN---EPF----KKCVLLFK-MNL------Y   75 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h---~~i----~~~~~~~~-v~~------~   75 (334)
                      ..++...||.+.+.+||+.+|+|+...... ....-+.+.+|.-....+.+   |.-    -+.+.++. +++      +
T Consensus        21 ~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~~~~~~~  100 (288)
T PF14531_consen   21 GKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIPGKPPFF  100 (288)
T ss_dssp             EEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEETTS-SEE
T ss_pred             ccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEcCCCcce
Confidence            345677999999999999999999776554 22223344444433333332   110    01111111 111      1


Q ss_pred             EEeecCC-----eEEEEEEccCCChhHHhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCC
Q psy6542          76 KVTSEPN-----SHYIIGVRQSGPKDQISRS---KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVP  147 (334)
Q Consensus        76 ~~~~~~~-----~~~ivmEy~~g~l~~l~~~---~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~  147 (334)
                      ..-...+     ..+++|.-+.+++..+...   ............-+.+..|++..+++||+.|               
T Consensus       101 ~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~G---------------  165 (288)
T PF14531_consen  101 ERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYG---------------  165 (288)
T ss_dssp             EECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT---------------
T ss_pred             ecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcc---------------
Confidence            1111111     2377888888885443221   1111111111222344579999999999999               


Q ss_pred             cEEeeCCCCCceeeCCCCCEEEEecccccccCCCCCCccccCccccccccccc---------cCCc-ceeeh--hHHHHH
Q psy6542         148 CLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKL---------GGPF-VSAWQ--TRYAKL  215 (334)
Q Consensus       148 ~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~---------~~~~-~~~w~--~~~~~l  215 (334)
                       ++|+||||+|++++.+|.+.|+||+.....+..... ...+..+.|||+...         .++. .|.|.  ++.+.+
T Consensus       166 -lVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~-~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~l  243 (288)
T PF14531_consen  166 -LVHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYRC-SEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSL  243 (288)
T ss_dssp             -EEEST-SGGGEEE-TTS-EEE--GGGEEETTEEEEG-GGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHH
T ss_pred             -eEecccceeeEEEcCCCCEEEcChHHHeecCceeec-cCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHH
Confidence             999999999999999999999999988766665443 333567889997422         1344 45555  666666


Q ss_pred             cCCCCCCCCCCCC
Q psy6542         216 FPNRLELHPESGQ  228 (334)
Q Consensus       216 ~~~~~~~~~~~~~  228 (334)
                      .++.+||......
T Consensus       244 WC~~lPf~~~~~~  256 (288)
T PF14531_consen  244 WCGRLPFGLSSPE  256 (288)
T ss_dssp             HHSS-STCCCGGG
T ss_pred             HHccCCCCCCCcc
Confidence            7778888655433

>KOG0606|consensus

Probab=99.44  E-value=9.6e-14  Score=140.33  Aligned_cols=134  Identities=19%  Similarity=0.231  Sum_probs=102.3

Q ss_pred             HHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCC-----------------C
Q psy6542         120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKK-----------------K  182 (334)
Q Consensus       120 qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~-----------------~  182 (334)
                      +++.+++|||+-+                |+|||+||+|.||..-|++|++|||+.+...+.                 .
T Consensus       151 dmvla~Eylh~yg----------------ivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~  214 (1205)
T KOG0606|consen  151 DMVLAVEYLHSYG----------------IVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQ  214 (1205)
T ss_pred             hhhHHhHhhccCC----------------eecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhh
Confidence            4588999999999                999999999999999999999999998744222                 1


Q ss_pred             CCccccCcccccccc-ccccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccccccccccH-hHHHHHH
Q psy6542         183 PHASVESDCILHGYI-KKLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITV-KGEQCVQ  256 (334)
Q Consensus       183 ~~~~~~t~~~~~~~v-~~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~  256 (334)
                      ....+||+.|.+|+| ..+||.+..|||    ++|+++.+ .+||+++....++..++.+.+.....+.... .....+.
T Consensus       215 dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVg-cvpffGdtpeelfg~visd~i~wpE~dea~p~Ea~dli~  293 (1205)
T KOG0606|consen  215 DKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVG-CVPFFGDTPEELFGQVISDDIEWPEEDEALPPEAQDLIE  293 (1205)
T ss_pred             hccccCCccccChhhhhhhccCCCccHHHHHHHHHHHhee-eeeccCCCHHHHHhhhhhhhccccccCcCCCHHHHHHHH
Confidence            345689999999998 678899999999    56666554 5588898877778777777665333332222 4555666


Q ss_pred             HhhccCchhhcCCC
Q psy6542         257 LKLTRDTRIVLTNP  270 (334)
Q Consensus       257 ~~~~~~p~~r~~~~  270 (334)
                      ..+..+|..|+...
T Consensus       294 ~LL~qnp~~Rlgt~  307 (1205)
T KOG0606|consen  294 QLLRQNPLCRLGTG  307 (1205)
T ss_pred             HHHHhChHhhcccc
Confidence            66677888887754

>KOG1024|consensus

Probab=99.41  E-value=5.3e-13  Score=122.16  Aligned_cols=186  Identities=9%  Similarity=0.049  Sum_probs=130.4

Q ss_pred             CCCceEEEeceeCC-----CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC-CeEE
Q psy6542          12 RVSKWRVKPPSLKP-----LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP-NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-----~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~-~~~~   85 (334)
                      +|-+++||.+.-++     ..+.|-+|.++....+-. ...+..|.-++..+.|||+        ..+.++..++ ...+
T Consensus       294 EGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQ-v~~~L~es~lly~~sH~nl--------l~V~~V~ie~~~~P~  364 (563)
T KOG1024|consen  294 EGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQ-VNLLLQESMLLYGASHPNL--------LSVLGVSIEDYATPF  364 (563)
T ss_pred             cCchhheeeeeecccCCcchHHHHHHHHHHhcccHHH-HHHHHHHHHHHhcCcCCCc--------cceeEEEeeccCcce
Confidence            46778898884332     334566777765444322 2356778889999999999        8888877644 4566


Q ss_pred             EEEEccCCC-h-hHHhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCcee
Q psy6542          86 IIGVRQSGP-K-DQISRSKI---NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANIL  160 (334)
Q Consensus        86 ivmEy~~g~-l-~~l~~~~~---~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiL  160 (334)
                      +++.++.-| + .++...+.   +.-......++..++.|++.|+.|||..+                +||.||...|++
T Consensus       365 V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~----------------ViHkDiAaRNCv  428 (563)
T KOG1024|consen  365 VLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHG----------------VIHKDIAARNCV  428 (563)
T ss_pred             EEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcC----------------cccchhhhhcce
Confidence            667777665 3 33322211   11122244556778889999999999999                999999999999


Q ss_pred             eCCCCCEEEEecccccccCCCCCCcc----ccCccccccccc--cccCCcceeeh---hHHHHHcCCCCCC
Q psy6542         161 LDEHGHVRISDLGLACDFSKKKPHAS----VESDCILHGYIK--KLGGPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       161 l~~~~~vkl~DFGla~~~~~~~~~~~----~~t~~~~~~~v~--~~~~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                      |++.-.|||+|=.|+|.+=....+.-    .....+|++|..  ..+...+|+|+   ++||++..+..|+
T Consensus       429 Idd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~Py  499 (563)
T KOG1024|consen  429 IDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPY  499 (563)
T ss_pred             ehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCc
Confidence            99999999999999996644432211    124567888863  44566777787   8999999988875

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.38  E-value=6.8e-13  Score=130.23  Aligned_cols=140  Identities=15%  Similarity=0.122  Sum_probs=86.6

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcc--------------------------------hHHhhh------HHHHH
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHE--------------------------------SRVAKW------RPYIQ   52 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~--------------------------------~~~~~~------~~~E~   52 (334)
                      ..+|-.+||+|..+.+|+.||||++++.-.+                                ....+.      +.+|+
T Consensus       128 asaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ElD~~~Ea  207 (537)
T PRK04750        128 ASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLMREA  207 (537)
T ss_pred             cCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhhCHHHHH
Confidence            3578889999999999999999999865210                                011222      33344


Q ss_pred             HHHHhcC----CCCcccccccceeeEEEEeec-CCeEEEEEEccCCC-hhHHhh-hhhh-hhhHHHHHHHHHHHHHHHHH
Q psy6542          53 EIFNHLR----NEPFKKCVLLFKMNLYKVTSE-PNSHYIIGVRQSGP-KDQISR-SKIN-RYHKKLRKCFIRRTVQLLEP  124 (334)
Q Consensus        53 ~il~~l~----h~~i~~~~~~~~v~~~~~~~~-~~~~~ivmEy~~g~-l~~l~~-~~~~-~~~~~~~~~~~~i~~qi~~~  124 (334)
                      ..+.+++    +.+.        +.+-.++.+ ....++||||++|+ +..+.. ...+ .........+..++.|+.  
T Consensus       208 ~N~~~~~~~f~~~~~--------v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif--  277 (537)
T PRK04750        208 ANASQLRRNFEDSDM--------LYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVF--  277 (537)
T ss_pred             HHHHHHHHHccCCCC--------eecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHH--
Confidence            4444432    3333        333333332 34568999999998 322211 1111 011112222223334554  


Q ss_pred             HHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC----CEEEEecccccccCCC
Q psy6542         125 VHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG----HVRISDLGLACDFSKK  181 (334)
Q Consensus       125 L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~----~vkl~DFGla~~~~~~  181 (334)
                           ..|                ++|+|+||.||+++.+|    .++++|||++..++..
T Consensus       278 -----~~G----------------ffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~~  317 (537)
T PRK04750        278 -----RDG----------------FFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKE  317 (537)
T ss_pred             -----hCC----------------eeeCCCChHHeEEecCCCCCCeEEEEecceEEECCHH
Confidence                 477                99999999999999988    9999999999877654

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.35  E-value=5.2e-12  Score=122.18  Aligned_cols=140  Identities=18%  Similarity=0.155  Sum_probs=87.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchH--------------------------------Hhh------hHHHHHH
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESR--------------------------------VAK------WRPYIQE   53 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~--------------------------------~~~------~~~~E~~   53 (334)
                      .+|-.+||+|..+ +|+.||||+.++.-.+..                                ...      .+.+|+.
T Consensus       127 saSigQVh~A~l~-~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~Ea~  205 (437)
T TIGR01982       127 AASIAQVHRARLV-DGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRREAA  205 (437)
T ss_pred             eeehhheEEEEec-CCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHHHHH
Confidence            4677899999876 599999999986532100                                000      2444555


Q ss_pred             HHHhcC----CCCcccccccceeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHH-HHHH
Q psy6542          54 IFNHLR----NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLE-PVHT  127 (334)
Q Consensus        54 il~~l~----h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~-~L~y  127 (334)
                      .+..++    |.+-     ..+.+.|..+  .+..++||||++|. +..+........   ...   .++.+++. .+..
T Consensus       206 n~~~~~~~~~~~~~-----v~vP~v~~~~--~~~~vLvmE~i~G~~L~~~~~~~~~~~---~~~---~ia~~~~~~~l~q  272 (437)
T TIGR01982       206 NASELGENFKNDPG-----VYVPEVYWDR--TSERVLTMEWIDGIPLSDIAALDEAGL---DRK---ALAENLARSFLNQ  272 (437)
T ss_pred             HHHHHHHhcCCCCC-----EEeCCEehhh--cCCceEEEEeECCcccccHHHHHhcCC---CHH---HHHHHHHHHHHHH
Confidence            555543    3332     0112333222  23468999999998 332222111111   111   22224444 4678


Q ss_pred             hhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCC
Q psy6542         128 CHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKK  181 (334)
Q Consensus       128 LH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~  181 (334)
                      +|..|                ++|+|+||.||+++.++.++++|||++..+...
T Consensus       273 l~~~g----------------~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~~  310 (437)
T TIGR01982       273 VLRDG----------------FFHADLHPGNIFVLKDGKIIALDFGIVGRLSEE  310 (437)
T ss_pred             HHhCC----------------ceeCCCCcccEEECCCCcEEEEeCCCeeECCHH
Confidence            89999                999999999999999999999999999877654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.35  E-value=6.5e-12  Score=106.10  Aligned_cols=87  Identities=17%  Similarity=0.126  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCCCccccC
Q psy6542         110 LRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVES  189 (334)
Q Consensus       110 ~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~~~~~~t  189 (334)
                      .+..++.++.|++.||.|||+++                      ||+|||++.++.+|+  ||+++......   ..|+
T Consensus        15 ~~~~~~~i~~qi~~~L~~lH~~~----------------------kp~Nil~~~~~~~~~--fG~~~~~~~~~---~~g~   67 (176)
T smart00750       15 NEEEIWAVCLQCLRALRELHRQA----------------------KSGNILLTWDGLLKL--DGSVAFKTPEQ---SRVD   67 (176)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcC----------------------CcccEeEcCccceee--ccceEeecccc---CCCc
Confidence            55667788889999999999872                      999999999999999  99998765443   2578


Q ss_pred             cccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         190 DCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       190 ~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +.|++||+.. . ....+|+|+   ++|++++ +..||..
T Consensus        68 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt-g~~p~~~  106 (176)
T smart00750       68 PYFMAPEVIQGQSYTEKADIYSLGITLYEALD-YELPYNE  106 (176)
T ss_pred             ccccChHHhcCCCCcchhhHHHHHHHHHHHHh-CCCCccc
Confidence            9999999853 2 244667777   5666654 4556543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1166|consensus

Probab=99.32  E-value=2.8e-12  Score=131.46  Aligned_cols=155  Identities=16%  Similarity=0.084  Sum_probs=107.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.++||+|.+.. |+.||+|+-+...-     ..|.--.+++.+|+ +-+    ...+..++.++...+..++|+||.
T Consensus       708 ~g~y~~vy~a~~~~-~~~~alK~e~P~~~-----WEfYI~~q~~~RLk-~~~----~~~~~~~~~a~~~~~~S~lv~ey~  776 (974)
T KOG1166|consen  708 EGSYGSVYVATHSN-GKLVALKVEKPPNP-----WEFYICLQVMERLK-PQM----LPSIMHISSAHVFQNASVLVSEYS  776 (974)
T ss_pred             cccceEEEEeecCC-CcEEEEEeecCCCc-----eeeeehHHHHHhhc-hhh----hcchHHHHHHHccCCcceeeeecc
Confidence            57888999999999 99999999886654     11222344566666 322    122266677777788889999999


Q ss_pred             CCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC------
Q psy6542          92 SGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE------  163 (334)
Q Consensus        92 ~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~------  163 (334)
                      +.|  +|.+...+     .-.+..++.+..|++.-++.||..+                |||+||||+|+||..      
T Consensus       777 ~~Gtlld~~N~~~-----~m~e~lv~~~~~qml~ive~lH~~~----------------IIHgDiKPDNfll~~~~~~~~  835 (974)
T KOG1166|consen  777 PYGTLLDLINTNK-----VMDEYLVMFFSCQMLRIVEHLHAMG----------------IIHGDIKPDNFLLRREICADS  835 (974)
T ss_pred             ccccHHHhhccCC-----CCCchhhhHHHHHHHHHHHHHHhcc----------------eecccCCcceeEeecccCCCC
Confidence            988  55553221     1244556677789999999999999                999999999999943      


Q ss_pred             -CCCEEEEecccccccCCCCC----CccccCccccccccc
Q psy6542         164 -HGHVRISDLGLACDFSKKKP----HASVESDCILHGYIK  198 (334)
Q Consensus       164 -~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~  198 (334)
                       ...++|+|||-+-.+..-..    ....+|...-..||.
T Consensus       836 ~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~  875 (974)
T KOG1166|consen  836 DSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMR  875 (974)
T ss_pred             cccceEEEecccceeeeEcCCCcEEeeeeccccchhHHHh
Confidence             23489999999864432221    223445555556663

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.27  E-value=2.4e-11  Score=101.95  Aligned_cols=127  Identities=14%  Similarity=0.034  Sum_probs=86.9

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      +...+||++...  +..|++|+......   ....+..|+.+++.+.+.++       ..+++....  ...++||||++
T Consensus         9 G~~~~vy~~~~~--~~~~~lK~~~~~~~---~~~~~~~E~~~l~~l~~~~~-------~P~~~~~~~--~~~~lv~e~i~   74 (170)
T cd05151           9 GMTNKNYRVEVA--NKKYVVRIPGNGTE---LLINRENEAENSKLAAEAGI-------GPKLYYFDP--ETGVLITEFIE   74 (170)
T ss_pred             cccCceEEEEEC--CeEEEEEeCCCCcc---cccCHHHHHHHHHHHHHhCC-------CCceEEEeC--CCCeEEEEecC
Confidence            445677877654  77899998765432   12245679999999876654       145555443  23479999999


Q ss_pred             CC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          93 GP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        93 g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      |. +...   .     . ...   .+..+++.+|..||..+.           ..+.++|+|++|.||+++ ++.++++|
T Consensus        75 G~~l~~~---~-----~-~~~---~~~~~l~~~l~~LH~~~~-----------~~~~~~HgD~~~~Nil~~-~~~~~liD  130 (170)
T cd05151          75 GSELLTE---D-----F-SDP---ENLEKIAKLLKKLHSSPL-----------PDLVPCHNDLLPGNFLLD-DGRLWLID  130 (170)
T ss_pred             CCccccc---c-----c-cCH---HHHHHHHHHHHHHhCCCC-----------CCceeecCCCCcCcEEEE-CCeEEEEe
Confidence            98 3111   0     0 111   223489999999999861           123369999999999999 67899999


Q ss_pred             cccccc
Q psy6542         172 LGLACD  177 (334)
Q Consensus       172 FGla~~  177 (334)
                      ||.+..
T Consensus       131 f~~a~~  136 (170)
T cd05151         131 WEYAGM  136 (170)
T ss_pred             cccccC
Confidence            999864

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG1240|consensus

Probab=99.26  E-value=1.5e-12  Score=132.15  Aligned_cols=216  Identities=18%  Similarity=0.252  Sum_probs=137.7

Q ss_pred             ceEEEeceeCCCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          15 KWRVKPPSLKPLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        15 ~~~V~~a~~~~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      +-||.+|++.+ |. |.||++-+...  +=+..++...|++ +..++|||.        +.+-.+...+..-|||=+|..
T Consensus        36 FlKv~r~k~~e-G~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~--------lPfqk~~~t~kAAylvRqyvk  104 (1431)
T KOG1240|consen   36 FLKVARAKDRE-GL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNC--------LPFQKVLVTDKAAYLVRQYVK  104 (1431)
T ss_pred             hhhhhhccCCC-ce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcc--------cchHHHHHhhHHHHHHHHHHh
Confidence            34677777776 55 89999776553  2112223344666 778899999        777777777778888999998


Q ss_pred             CC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          93 GP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        93 g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      ++ .|++..+   .|....++.  .|+.|++.||.-+|..|                |.|+|||.+|||+++=+.+.|+|
T Consensus       105 hnLyDRlSTR---PFL~~iEKk--WiaFQLL~al~qcH~~g----------------VcHGDIKsENILiTSWNW~~LtD  163 (1431)
T KOG1240|consen  105 HNLYDRLSTR---PFLVLIEKK--WIAFQLLKALSQCHKLG----------------VCHGDIKSENILITSWNWLYLTD  163 (1431)
T ss_pred             hhhhhhhccc---hHHHHHHHH--HHHHHHHHHHHHHHHcC----------------ccccccccceEEEeeechhhhhc
Confidence            88 5555443   344444443  44569999999999999                99999999999999999999999


Q ss_pred             ccccccc--CCCCC-------CccccCcccccccc--cccc-----------CCcceeeh--hH-HHHHcCCCCCCCCCC
Q psy6542         172 LGLACDF--SKKKP-------HASVESDCILHGYI--KKLG-----------GPFVSAWQ--TR-YAKLFPNRLELHPES  226 (334)
Q Consensus       172 FGla~~~--~~~~~-------~~~~~t~~~~~~~v--~~~~-----------~~~~~~w~--~~-~~~l~~~~~~~~~~~  226 (334)
                      |..-+..  ..+.+       .+.....||.+||-  ...+           .+..|+++  |+ .|++.-|+++|.-..
T Consensus       164 FAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQ  243 (1431)
T KOG1240|consen  164 FASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQ  243 (1431)
T ss_pred             ccccCCccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHH
Confidence            9987633  22221       12223578999985  1111           23455566  54 455555677662211


Q ss_pred             -------CCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         227 -------GQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       227 -------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                             ....++..+ +.+.    +-   .-+..+..++.+||..|+.++
T Consensus       244 L~aYr~~~~~~~e~~L-e~Ie----d~---~~Rnlil~Mi~rdPs~RlSAe  286 (1431)
T KOG1240|consen  244 LLAYRSGNADDPEQLL-EKIE----DV---SLRNLILSMIQRDPSKRLSAE  286 (1431)
T ss_pred             HHhHhccCccCHHHHH-HhCc----Cc---cHHHHHHHHHccCchhccCHH
Confidence                   011111111 1111    11   123445555688999999887

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.21  E-value=2.3e-10  Score=98.47  Aligned_cols=133  Identities=12%  Similarity=0.113  Sum_probs=89.1

Q ss_pred             eEEEeceeCC------CCCcEEEEEeeCCCc-----------chH---------Hhh----hHHHHHHHHHhcCCCCccc
Q psy6542          16 WRVKPPSLKP------LGFPIQIGMLRHRPH-----------ESR---------VAK----WRPYIQEIFNHLRNEPFKK   65 (334)
Q Consensus        16 ~~V~~a~~~~------~~~~vAIK~l~~~~~-----------~~~---------~~~----~~~~E~~il~~l~h~~i~~   65 (334)
                      -.||.|....      .+..+|||+.+....           +.+         ..+    +..+|+..|+++....+  
T Consensus        11 a~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~rl~~~Gv--   88 (197)
T cd05146          11 SVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKRMQKAGI--   88 (197)
T ss_pred             eEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence            4688887654      357999999875321           111         011    33489999999875433  


Q ss_pred             ccccceeeEEEEeecCCeEEEEEEccCCC-h--hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh-hcCCCCCchhhhh
Q psy6542          66 CVLLFKMNLYKVTSEPNSHYIIGVRQSGP-K--DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTC-HSALNKNPLIAIF  141 (334)
Q Consensus        66 ~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-l--~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yL-H~~~~~~~~~~~~  141 (334)
                          -+.+.+++    +..+|||||++|+ +  ..+...   ..   .......+..|++.+|..+ |..+         
T Consensus        89 ----~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~---~~---~~~~~~~i~~~i~~~l~~l~H~~g---------  145 (197)
T cd05146          89 ----PCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDA---KL---NDEEMKNAYYQVLSMMKQLYKECN---------  145 (197)
T ss_pred             ----CCCeEEEe----cCCEEEEEEcCCCCccchhhhcc---cc---CHHHHHHHHHHHHHHHHHHHHhCC---------
Confidence                01566654    4678999999875 1  111110   11   1122234456999999999 8898         


Q ss_pred             hcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCC
Q psy6542         142 LTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKK  181 (334)
Q Consensus       142 ~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~  181 (334)
                             ++|+||++.|||++ ++.+.|+|||-|......
T Consensus       146 -------lVHGDLs~~NIL~~-~~~v~iIDF~qav~~~hp  177 (197)
T cd05146         146 -------LVHADLSEYNMLWH-DGKVWFIDVSQSVEPTHP  177 (197)
T ss_pred             -------eecCCCCHHHEEEE-CCcEEEEECCCceeCCCC
Confidence                   99999999999997 478999999988766544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=99.16  E-value=3.5e-12  Score=95.72  Aligned_cols=115  Identities=63%  Similarity=1.033  Sum_probs=107.9

Q ss_pred             ccccccccccccCCcceeehhHHHHHcCCCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         190 DCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      .+.+.+|+++.|+|+.+.|..-|..++++++.+++.+....+++++++++.++..++..+++..||...+..+++..+++
T Consensus         2 DcIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~~eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~vlt~   81 (116)
T cd01240           2 DCIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANKPELITMDQIEDVSVEFQQIKEENCILLKIRDEKKIVLTN   81 (116)
T ss_pred             ceEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccCCcEEEeehhhhcchhheeeccCceEEEEEcCCceEEEec
Confidence            35677899999999999999999999999999999998889999999999999989888899999999998899999999


Q ss_pred             CcccCCCCCCCCChhhHHHhhhhcccccchhHHHHHHHHHHhCCCC
Q psy6542         270 PVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMARKAGKIY  315 (334)
Q Consensus       270 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~lL~~l~~~~~~~~  315 (334)
                      .           +++++.+|..+.+..++.+++++++|.++++|.|
T Consensus        82 ~-----------d~i~l~qW~~elr~a~r~Sq~ll~~m~Kka~K~y  116 (116)
T cd01240          82 S-----------DEIELKQWKKELRDAHRESQQLLQRMPKKANKIY  116 (116)
T ss_pred             C-----------CcHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCC
Confidence            9           8999999999999999999999999999999876

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>KOG0590|consensus

Probab=99.02  E-value=4.9e-11  Score=119.23  Aligned_cols=166  Identities=20%  Similarity=0.226  Sum_probs=121.9

Q ss_pred             EEEecee-CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEccCCC
Q psy6542          17 RVKPPSL-KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP   94 (334)
Q Consensus        17 ~V~~a~~-~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~   94 (334)
                      .|-.+.. ..+...+|.|.+.....+.....+...|..+-+.+. |.|+        +.+++...+.+..+++++|..|+
T Consensus        35 ~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~--------~~~~~~~~~~~~~~~~~~~s~g~  106 (601)
T KOG0590|consen   35 SSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNT--------VHMIEPSSSPRSYLLSLSYSDGG  106 (601)
T ss_pred             hhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccc--------cccCCccCCCcccccccCccccc
Confidence            3333433 234445677777766544445556667888888888 9999        99999999999999999998888


Q ss_pred             --hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-cCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-CEEEE
Q psy6542          95 --KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCH-SALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-HVRIS  170 (334)
Q Consensus        95 --l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH-~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-~vkl~  170 (334)
                        .+.+...............++.   |+..++.|+| ..+                +.|||+||+|.+++..+ .+++.
T Consensus       107 ~~f~~i~~~~~~~~~~~~~~~~~~---ql~s~l~~~H~~~~----------------~~h~~ikP~n~~l~~s~~~l~~~  167 (601)
T KOG0590|consen  107 SLFSKISHPDSTGTSSSSASRYLP---QLNSGLSYLHPENG----------------VTHRDIKPSNSLLDESGSALKIA  167 (601)
T ss_pred             ccccccccCCccCCCCcchhhhhh---hhccCccccCcccc----------------cccCCCCCccchhccCCCcccCC
Confidence              2222122221333445555555   9999999999 888                99999999999999999 99999


Q ss_pred             ecccccccCC-CCC----Ccccc-Ccccccccccc---ccCCcceeeh
Q psy6542         171 DLGLACDFSK-KKP----HASVE-SDCILHGYIKK---LGGPFVSAWQ  209 (334)
Q Consensus       171 DFGla~~~~~-~~~----~~~~~-t~~~~~~~v~~---~~~~~~~~w~  209 (334)
                      |||+|..+.. ...    ...+| ++.|++||+..   ...+..|.|+
T Consensus       168 df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S  215 (601)
T KOG0590|consen  168 DFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWS  215 (601)
T ss_pred             CchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCccccc
Confidence            9999997766 322    33567 88888898743   3366788888

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.02  E-value=4.3e-09  Score=90.09  Aligned_cols=131  Identities=20%  Similarity=0.190  Sum_probs=80.1

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCc------------------------chHHhhhHHHHHHHHHhcCCCCccccccccee
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPH------------------------ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKM   72 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~------------------------~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v   72 (334)
                      .||.|...+ |..+|||+-+....                        ......+..+|.+.|+.+..-++      .+.
T Consensus         1 ~Vy~~~~~~-~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv------~vP   73 (188)
T PF01163_consen    1 DVYHAIDPD-GEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGV------PVP   73 (188)
T ss_dssp             EEEEEEECT-TEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-------SS-
T ss_pred             CEEEEECCC-CCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCc------cCC
Confidence            388888765 77999999875321                        11123367789999999987642      016


Q ss_pred             eEEEEeecCCeEEEEEEccC--CC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-hhcCCCCCchhhhhhcCCCCc
Q psy6542          73 NLYKVTSEPNSHYIIGVRQS--GP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHT-CHSALNKNPLIAIFLTLSVPC  148 (334)
Q Consensus        73 ~~~~~~~~~~~~~ivmEy~~--g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~y-LH~~~~~~~~~~~~~~~~~~~  148 (334)
                      +.+++.    ...|||||++  |. +..+......   ......   ++.+++..+.. +|..|                
T Consensus        74 ~p~~~~----~~~ivME~I~~~G~~~~~l~~~~~~---~~~~~~---~~~~il~~~~~~~~~~g----------------  127 (188)
T PF01163_consen   74 KPYDYN----RNVIVMEYIGEDGVPLPRLKDVDLS---PEEPKE---LLEEILEEIIKMLHKAG----------------  127 (188)
T ss_dssp             -EEEEE----TTEEEEE--EETTEEGGCHHHCGGG---GSTHHH---HHHHHHHHHHHHHHCTT----------------
T ss_pred             cEEEEe----CCEEEEEecCCCccchhhHHhcccc---chhHHH---HHHHHHHHHHHHHHhcC----------------
Confidence            666543    3479999999  54 3333222211   112222   23377775555 57999                


Q ss_pred             EEeeCCCCCceeeCCCCCEEEEecccccccCCC
Q psy6542         149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKK  181 (334)
Q Consensus       149 iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~  181 (334)
                      ++|+||.+.|||++++ .+.++|||.+......
T Consensus       128 ivHGDLs~~NIlv~~~-~~~iIDf~qav~~~~p  159 (188)
T PF01163_consen  128 IVHGDLSEYNILVDDG-KVYIIDFGQAVDSSHP  159 (188)
T ss_dssp             EEESS-STTSEEEETT-CEEE--GTTEEETTST
T ss_pred             ceecCCChhhEEeecc-eEEEEecCcceecCCc
Confidence            9999999999999887 8999999988765543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG1023|consensus

Probab=99.00  E-value=1.3e-09  Score=105.02  Aligned_cols=146  Identities=10%  Similarity=0.010  Sum_probs=103.8

Q ss_pred             HHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy6542          55 FNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALN  133 (334)
Q Consensus        55 l~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~  133 (334)
                      |+.+.|.|+        .+|++.+.++...++|.+||.-| +..++......   .+..+...++..|+.||.|||... 
T Consensus         1 l~~l~h~n~--------~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~---~d~~F~~s~~rdi~~Gl~ylh~s~-   68 (484)
T KOG1023|consen    1 LRQLDHDNL--------NKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIK---LDYFFILSFIRDISKGLAYLHNSP-   68 (484)
T ss_pred             Ccccchhhh--------hhheeeEecCCceEEEEeeecCccHHhHHhccccC---ccHHHHHHHHHHHHHHHHHHhcCc-
Confidence            357899999        99999999999999999999888 43333332222   245555566779999999999875 


Q ss_pred             CCchhhhhhcCCCCcE-EeeCCCCCceeeCCCCCEEEEecccccccCC----CCCCccccCccccccccccc--------
Q psy6542         134 KNPLIAIFLTLSVPCL-HFRDLKPANILLDEHGHVRISDLGLACDFSK----KKPHASVESDCILHGYIKKL--------  200 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~i-iHrDlKp~NiLl~~~~~vkl~DFGla~~~~~----~~~~~~~~t~~~~~~~v~~~--------  200 (334)
                                     | .|+.++..|++++....+||+|||+......    ...........+++||+...        
T Consensus        69 ---------------i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~  133 (484)
T KOG1023|consen   69 ---------------IGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLES  133 (484)
T ss_pred             ---------------ceeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccc
Confidence                           5 8999999999999999999999999876642    11122233566788887433        


Q ss_pred             -cCCcceeeh--hHHHHHcCCCCCCCCCCC
Q psy6542         201 -GGPFVSAWQ--TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       201 -~~~~~~~w~--~~~~~l~~~~~~~~~~~~  227 (334)
                       +....|+.+  ++.+.+....-||.....
T Consensus       134 ~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~  163 (484)
T KOG1023|consen  134 ALTQKGDIYSFGIIMYEILFRSGPFDLRNL  163 (484)
T ss_pred             cccccCCeehHHHHHHHHHhccCccccccc
Confidence             344566666  444444555556655443

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.99  E-value=8.1e-09  Score=90.17  Aligned_cols=149  Identities=14%  Similarity=0.021  Sum_probs=96.1

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCC--cccccccceeeEEEEeecC---CeEEEE
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEP--FKKCVLLFKMNLYKVTSEP---NSHYII   87 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~--i~~~~~~~~v~~~~~~~~~---~~~~iv   87 (334)
                      +..-.||++.... |..+++|........ .....+..|.++++.+++.+  +        .+++.+....   +..++|
T Consensus         9 G~~n~~~~v~~~~-g~~~ilK~~~~~~~~-~~~~~~~~E~~~~~~l~~~~~~v--------p~~~~~~~~~~~~~~~~~v   78 (223)
T cd05154           9 GQSNLTYLLTAGG-GRRLVLRRPPPGALL-PSAHDVAREYRVLRALAGTGVPV--------PKVLALCEDPSVLGTPFYV   78 (223)
T ss_pred             CccceEEEEEecC-CcceEEEeCCCcccC-cccccHHHHHHHHHHhhCCCCCC--------CCEEEECCCCCccCCceEE
Confidence            4445677766544 689999998754432 12346778999999998643  4        6666666543   367899


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCc-hh---------------------------
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNP-LI---------------------------  138 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~-~~---------------------------  138 (334)
                      |||++|. +......  ...   .......++.+++.+|..||+...... ..                           
T Consensus        79 ~e~i~G~~l~~~~~~--~~~---~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (223)
T cd05154          79 MERVDGRVLRDRLLR--PEL---SPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDE  153 (223)
T ss_pred             EEEeCCEecCCCCCC--CCC---CHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccc
Confidence            9999998 3221110  112   222233445599999999997542110 00                           


Q ss_pred             ------------hhhhcCCCCcEEeeCCCCCceeeCC--CCCEEEEeccccc
Q psy6542         139 ------------AIFLTLSVPCLHFRDLKPANILLDE--HGHVRISDLGLAC  176 (334)
Q Consensus       139 ------------~~~~~~~~~~iiHrDlKp~NiLl~~--~~~vkl~DFGla~  176 (334)
                                  ...-+...++++|+|+.|.||+++.  ++.+.|+||+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~  205 (223)
T cd05154         154 PPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT  205 (223)
T ss_pred             cHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence                        0000113578899999999999998  5668999999875

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0601|consensus

Probab=98.96  E-value=9.5e-10  Score=106.21  Aligned_cols=172  Identities=13%  Similarity=0.009  Sum_probs=130.3

Q ss_pred             CCCCceEEEecee--CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          11 SRVSKWRVKPPSL--KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        11 ~~~~~~~V~~a~~--~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +-+++|.||.+.+  ..++..+|+|.=+.........++-.+|+.....++ |+|.        ++.+..+...+.+|+-
T Consensus       125 ~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~--------v~~~~~~e~~~~lfiq  196 (524)
T KOG0601|consen  125 LPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENP--------VRDSPAWEGSGILFIQ  196 (524)
T ss_pred             CCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccc--------cccCcccccCCcceee
Confidence            3388899999999  999999999984433332223344456777777775 8888        9999999999999999


Q ss_pred             EEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHH----HHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          88 GVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLE----PVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        88 mEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~----~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +|+|...+........+.+   ....++..+.+...    ||..+|+.+                ++|-|+||+||.+..
T Consensus       197 tE~~~~sl~~~~~~~~~~~---p~~~l~~~~~~~~~~~~~al~~~hs~~----------------~~~~~~kp~~i~~~~  257 (524)
T KOG0601|consen  197 TELCGESLQSYCHTPCNFL---PDNLLWNSLRDWLSRDVTALSHLHSNN----------------IVHDDLKPANIFTTS  257 (524)
T ss_pred             eccccchhHHhhhcccccC---CchhhhhHHhhhhhcccccccccCCCc----------------ccccccchhheeccc
Confidence            9999977544434333323   34445566667777    999999999                999999999999999


Q ss_pred             C-CCEEEEecccccccCCCCCC-------ccccCccccccccccccCCcceeeh
Q psy6542         164 H-GHVRISDLGLACDFSKKKPH-------ASVESDCILHGYIKKLGGPFVSAWQ  209 (334)
Q Consensus       164 ~-~~vkl~DFGla~~~~~~~~~-------~~~~t~~~~~~~v~~~~~~~~~~w~  209 (334)
                      + ..++++|||+...+....-.       ...|...|+.+++...-+++.++..
T Consensus       258 ~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~  311 (524)
T KOG0601|consen  258 DWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIF  311 (524)
T ss_pred             ccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhc
Confidence            9 88999999999987666421       1145678899998777777766666

>KOG1033|consensus

Probab=98.95  E-value=1.3e-10  Score=110.41  Aligned_cols=114  Identities=18%  Similarity=0.162  Sum_probs=83.8

Q ss_pred             eEEEEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCcee
Q psy6542          83 SHYIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANIL  160 (334)
Q Consensus        83 ~~~ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiL  160 (334)
                      ++||.|++|.-+  .|++.++...  .+........|+.|++.|+.|   ++                .+|||+||.||.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~--e~~s~s~~~~~~~q~~~~~~y---k~----------------~ihrdlkp~nif  388 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTG--EERSLSLMLDIFKQIAPAVEY---KG----------------LIHRDLKPSNIF  388 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcc--cccchhHHHHHHHhhccchhh---cc----------------chhhhccccccc
Confidence            589999999887  4455433322  222444566788899999999   77                999999999999


Q ss_pred             eCCCCCEEEEecccccccCCCC-------C-CccccCcccccccc-ccccCCcceeeh----hHHHHHcC
Q psy6542         161 LDEHGHVRISDLGLACDFSKKK-------P-HASVESDCILHGYI-KKLGGPFVSAWQ----TRYAKLFP  217 (334)
Q Consensus       161 l~~~~~vkl~DFGla~~~~~~~-------~-~~~~~t~~~~~~~v-~~~~~~~~~~w~----~~~~~l~~  217 (334)
                      ...++.+||.||||........       . ....||..||.||- ....|....++.    +++|++..
T Consensus       389 ~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~  458 (516)
T KOG1033|consen  389 FSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQ  458 (516)
T ss_pred             cccchhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHH
Confidence            9999999999999998665544       2 23568999999995 345566555555    66666653

>KOG0195|consensus

Probab=98.94  E-value=6.4e-10  Score=97.86  Aligned_cols=180  Identities=14%  Similarity=0.072  Sum_probs=119.5

Q ss_pred             CCCCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542           9 RESRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus         9 ~~~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +|-|-++|+         |..++.|++.-..-..+....|.+|+-.|+-+.||||        ..+.+++.++-.+.++.
T Consensus       204 gelwrgrwq---------gndivakil~vr~~t~risrdfneefp~lrifshpni--------lpvlgacnsppnlv~is  266 (448)
T KOG0195|consen  204 GELWRGRWQ---------GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNI--------LPVLGACNSPPNLVIIS  266 (448)
T ss_pred             ccccccccc---------CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCch--------hhhhhhccCCCCceEee
Confidence            566666666         5667778888777677777889999999999999999        99999999998999999


Q ss_pred             EccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE-eeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH-FRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii-HrDlKp~NiLl~~~~~v  167 (334)
                      .|++-|.-+-..+.... -.....+...++..++.|+.|||+..               |++ ---|....+++|++-+.
T Consensus       267 q~mp~gslynvlhe~t~-vvvd~sqav~faldiargmaflhsle---------------p~ipr~~lns~hvmidedlta  330 (448)
T KOG0195|consen  267 QYMPFGSLYNVLHEQTS-VVVDHSQAVRFALDIARGMAFLHSLE---------------PMIPRFYLNSKHVMIDEDLTA  330 (448)
T ss_pred             eeccchHHHHHHhcCcc-EEEecchHHHHHHHHHhhHHHHhhcc---------------hhhhhhhcccceEEecchhhh
Confidence            99998822211221111 12234455677789999999999987               244 33566778888888665


Q ss_pred             EEE--ecccccccCCCCCCccccCcccccccccc-----ccCCcceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         168 RIS--DLGLACDFSKKKPHASVESDCILHGYIKK-----LGGPFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       168 kl~--DFGla~~~~~~~~~~~~~t~~~~~~~v~~-----~~~~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      +|.  |--++-  ..   ....-+|.+|+||.+.     ......|+|+  ++.-.+.+..+||...+
T Consensus       331 rismad~kfsf--qe---~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadls  393 (448)
T KOG0195|consen  331 RISMADTKFSF--QE---VGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLS  393 (448)
T ss_pred             heecccceeee--ec---cccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCC
Confidence            553  322221  11   1112257788888632     2245678888  43333466666765444

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.93  E-value=1.1e-08  Score=85.81  Aligned_cols=98  Identities=19%  Similarity=0.182  Sum_probs=69.8

Q ss_pred             hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHH
Q psy6542          42 SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-K-DQISRSKINRYHKKLRKCFIRRTV  119 (334)
Q Consensus        42 ~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~  119 (334)
                      .....+..+|+.++.+++--.|      ....+|++  +.+.-.|+|||++|. + +.+...        .    ..++.
T Consensus        40 klrr~Rt~~Earil~~a~~~GV------~~P~v~dv--D~~~~~I~me~I~G~~lkd~l~~~--------~----~~~~r   99 (204)
T COG3642          40 KLRRERTRREARILAKAREAGV------PVPIVYDV--DPDNGLIVMEYIEGELLKDALEEA--------R----PDLLR   99 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC------CCCeEEEE--cCCCCEEEEEEeCChhHHHHHHhc--------c----hHHHH
Confidence            3344577889999999875544      11334433  556678999999999 2 333222        0    12333


Q ss_pred             HHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       120 qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      .+=.-+.-||..+                |+|+||.++||++++++ +.++||||+.
T Consensus       100 ~vG~~vg~lH~~g----------------ivHGDLTtsNiIl~~~~-i~~IDfGLg~  139 (204)
T COG3642         100 EVGRLVGKLHKAG----------------IVHGDLTTSNIILSGGR-IYFIDFGLGE  139 (204)
T ss_pred             HHHHHHHHHHhcC----------------eecCCCccceEEEeCCc-EEEEECCccc
Confidence            5556677799999                99999999999998866 9999999986

>KOG3087|consensus

Probab=98.93  E-value=1.5e-08  Score=84.96  Aligned_cols=131  Identities=20%  Similarity=0.139  Sum_probs=86.2

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCC--c----chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRP--H----ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~--~----~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.  -.|+.+.||.=....  +    ..-.+++..+|++++.++.--.|      ...++  ++.+.+.-.|+|||
T Consensus        22 rv~~~~--~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI------~~P~l--~~~D~~~~~i~ME~   91 (229)
T KOG3087|consen   22 RVPRGS--FSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGI------PAPRL--IFIDTYGGQIYMEF   91 (229)
T ss_pred             eEeeec--cCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC------CCceE--EEEecCCCeEEEEe
Confidence            455443  456777777643322  1    33345577889999998775544      11233  34456677899999


Q ss_pred             cCCC---hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC-
Q psy6542          91 QSGP---KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH-  166 (334)
Q Consensus        91 ~~g~---l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~-  166 (334)
                      ++|.   .+++............   ....+.+|=..+.-||.++                ++|+||..+||++.+++. 
T Consensus        92 ~~g~~~vk~~i~~~~~~~~~d~~---~~~~~~~iG~~igklH~nd----------------iiHGDLTTSNill~~~~~~  152 (229)
T KOG3087|consen   92 IDGASTVKDFILSTMEDESEDEG---LAELARRIGELIGKLHDND----------------IIHGDLTTSNILLRSDGNQ  152 (229)
T ss_pred             ccchhHHHHHHHHHccCcccchh---HHHHHHHHHHHHHHhhhCC----------------eecccccccceEEecCCCc
Confidence            9994   4555444332222211   2344447777788999999                999999999999977754 


Q ss_pred             --EEEEeccccc
Q psy6542         167 --VRISDLGLAC  176 (334)
Q Consensus       167 --vkl~DFGla~  176 (334)
                        +.++|||++.
T Consensus       153 ~~~~lIdfgls~  164 (229)
T KOG3087|consen  153 ITPILIDFGLSS  164 (229)
T ss_pred             CceEEEeecchh
Confidence              5899999975

>KOG1243|consensus

Probab=98.90  E-value=1.9e-08  Score=98.49  Aligned_cols=138  Identities=14%  Similarity=0.174  Sum_probs=105.2

Q ss_pred             CCCCceEEE-eceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVK-PPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~-~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .-.+.|-|| .+..+.++.+|.|.+.+....  .......+-++-|+.++||||        +++++.++..+.+|||+|
T Consensus        20 ~~~~~~a~~~~~t~k~~~~~vsVF~~~~~~~--~~~~~~~~A~k~lKtlRHP~I--------l~yL~t~e~~~~~ylvTE   89 (690)
T KOG1243|consen   20 TAFSSEALWPDGTRKADGGPVSVFVYKRSNG--EVTELAKRAVKRLKTLRHPNI--------LSYLDTTEEEGTLYLVTE   89 (690)
T ss_pred             ccCCCcccccccceeccCCceEEEEEeCCCc--hhhHHHHHHHHHhhhccCchh--------hhhhhhhcccCceEEEee
Confidence            344566666 588889999999999886665  223344557788999999999        999999999999999999


Q ss_pred             ccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          90 RQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        90 y~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      -+.--...+....        ....-.-+.||+.||.|||+.++               ++|.++.-+.|.++..|..||
T Consensus        90 rV~Pl~~~lk~l~--------~~~v~~Gl~qIl~AL~FL~~d~~---------------lvHgNv~~~SVfVn~~GeWkL  146 (690)
T KOG1243|consen   90 RVRPLETVLKELG--------KEEVCLGLFQILAALSFLNDDCN---------------LVHGNVCKDSVFVNESGEWKL  146 (690)
T ss_pred             ccccHHHHHHHhH--------HHHHHHHHHHHHHHHHHHhccCC---------------eeeccEeeeeEEEcCCCcEEE
Confidence            8766533332211        11122235599999999986553               999999999999999999999


Q ss_pred             EecccccccCCC
Q psy6542         170 SDLGLACDFSKK  181 (334)
Q Consensus       170 ~DFGla~~~~~~  181 (334)
                      ++|-++......
T Consensus       147 ggle~v~~~~~~  158 (690)
T KOG1243|consen  147 GGLELVSKASGF  158 (690)
T ss_pred             eeeEEEeccccC
Confidence            999998654433

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.79  E-value=7.9e-08  Score=87.03  Aligned_cols=127  Identities=13%  Similarity=-0.013  Sum_probs=81.1

Q ss_pred             CCCcEEEEEeeCCCcchHHh---------hhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-----CCeEEEEEEcc
Q psy6542          26 LGFPIQIGMLRHRPHESRVA---------KWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-----PNSHYIIGVRQ   91 (334)
Q Consensus        26 ~~~~vAIK~l~~~~~~~~~~---------~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-----~~~~~ivmEy~   91 (334)
                      .|+.|.||...........+         ..+.+|...+..|..-+|   -.   .....+++.     ...-++|||++
T Consensus        44 ~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GI---pt---P~pVa~~e~~~~~~~~~s~LVte~l  117 (268)
T PRK15123         44 AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGV---DT---MTGVAFGERGSNPATRTSFIITEDL  117 (268)
T ss_pred             CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCC---CC---CCeeEEEEecCCCccceeEEEEeeC
Confidence            46789999664332111111         136689998888755444   00   233223321     23578999999


Q ss_pred             CCC--hhHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-----
Q psy6542          92 SGP--KDQISRSK-INRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-----  163 (334)
Q Consensus        92 ~g~--l~~l~~~~-~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-----  163 (334)
                      +|.  +..+.... ....   .......++.+++..+.-||..|                |+|+|+++.|||++.     
T Consensus       118 ~~~~sL~~~~~~~~~~~~---~~~~~~~ll~~la~~i~~LH~~G----------------i~HgDL~~~NiLl~~~~~~~  178 (268)
T PRK15123        118 APTISLEDYCADWATNPP---DPRLKRMLIKRVATMVRDMHAAG----------------INHRDCYICHFLLHLPFPGR  178 (268)
T ss_pred             CCCccHHHHHHhhcccCC---CHHHHHHHHHHHHHHHHHHHHCc----------------CccCCCChhhEEEeccccCC
Confidence            996  44343221 1111   12222345569999999999999                999999999999975     


Q ss_pred             --CCCEEEEecccccc
Q psy6542         164 --HGHVRISDLGLACD  177 (334)
Q Consensus       164 --~~~vkl~DFGla~~  177 (334)
                        +..+.++||+.++.
T Consensus       179 ~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        179 EEDLKLSVIDLHRAQI  194 (268)
T ss_pred             CCCceEEEEECCcccc
Confidence              46799999998863

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.63  E-value=3.8e-07  Score=79.50  Aligned_cols=143  Identities=15%  Similarity=0.066  Sum_probs=91.6

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcch-----HHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC----
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHES-----RVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP----   81 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~-----~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~----   81 (334)
                      .|+.-|.+........++.+-+|.........     .......+|...+..|..-.|      -..+...+....    
T Consensus        16 ~R~~~~~~~~~~~~~~~~~y~~k~~~~~~~~~~~~~~~~~~ra~~E~~~~~~L~~~Gi------~tP~pva~~~~r~~~~   89 (206)
T PF06293_consen   16 GRRGGWFGVQRVVDLVGRRYYRKRLWNKLRRDRLRFPLRRSRAKREWRNLQRLREAGI------PTPEPVAYGERRKGGG   89 (206)
T ss_pred             CCceEEEEEEccccccceEEEECCeechhccchhhhcccchHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCc
Confidence            35566665555444556667777543221111     123356678888888775554      013444444431    


Q ss_pred             CeEEEEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          82 NSHYIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        82 ~~~~ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                      ...++|||+++|.  ++.+...... ..   ......++.+++..+.-||++|                |+|+|+++.||
T Consensus        90 ~~s~lite~l~~~~~L~~~~~~~~~-~~---~~~~~~ll~~l~~~i~~lH~~g----------------i~H~Dl~~~NI  149 (206)
T PF06293_consen   90 YRSYLITEALPGAQDLRDLLQQWEQ-LD---PSQRRELLRALARLIAKLHDAG----------------IYHGDLNPSNI  149 (206)
T ss_pred             eeEEEEEEeCCCcccHHHHHHhhcc-cc---hhhHHHHHHHHHHHHHHHHHCc----------------CCCCCCCcccE
Confidence            3458999999996  4443332111 11   2222344559999999999999                99999999999


Q ss_pred             eeCCCC---CEEEEecccccccC
Q psy6542         160 LLDEHG---HVRISDLGLACDFS  179 (334)
Q Consensus       160 Ll~~~~---~vkl~DFGla~~~~  179 (334)
                      |++.++   .+.++||+.++...
T Consensus       150 Lv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  150 LVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             EEeCCCCceeEEEEcchhceeCC
Confidence            999987   79999999887544

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG1266|consensus

Probab=98.60  E-value=9.2e-09  Score=92.96  Aligned_cols=188  Identities=12%  Similarity=0.090  Sum_probs=108.4

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhh--hHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC-----eEEEEEE
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAK--WRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN-----SHYIIGV   89 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~--~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~-----~~~ivmE   89 (334)
                      -||++-+.++|.+|.--.+.......-..+  ....-+.-+-++.|.|+        |+++.++.+..     +..++.|
T Consensus        81 ~v~lamd~e~g~evvwneVq~~~rK~~~~qeek~~~vFdnllqlvHsnl--------vkfH~yw~d~K~~e~~rviFite  152 (458)
T KOG1266|consen   81 DVYLAMDTEEGVEVVWNEVQFSERKNPKEQEEKRRAVFDNLLQLVHSNL--------VKFHKYWTDKKYEEKPRVIFITE  152 (458)
T ss_pred             HHHHHhhhccCchhhHHHHHHHHhcChhhCHHHHHHHHHHHHHHHHHHH--------HHHHHhhcccccccccceEEEEe
Confidence            356666677776664333221110000000  11112334556789999        99999887543     4788999


Q ss_pred             ccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          90 RQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        90 y~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      |+..|  ..++.+.+... ........-+|+.||++||.|||+..              |||+|.++...-|.+..+|-+
T Consensus       153 ymssgs~~~fLkrt~~~~-~a~~~~~wkkw~tqIlsal~yLhs~~--------------PpiihgnlTc~tifiq~ngLI  217 (458)
T KOG1266|consen  153 YMSSGSLKQFLKRTKKNQ-KALFQKAWKKWCTQILSALSYLHSCD--------------PPIIHGNLTCDTIFIQHNGLI  217 (458)
T ss_pred             cccchhHHHHHHHHHHhh-hhhhHHHHHHHHHHHHhhhhhhhccC--------------CccccCCcchhheeecCCceE
Confidence            99888  34443333221 22234445678889999999999987              889999999999999988877


Q ss_pred             EEEecccccccCCC----C---CCccccCccccccccc-ccc-CCcceeeh---hHHHHHcCCCCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKK----K---PHASVESDCILHGYIK-KLG-GPFVSAWQ---TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       168 kl~DFGla~~~~~~----~---~~~~~~t~~~~~~~v~-~~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~  228 (334)
                      |+.- +--......    .   .....+.+.+.+|+-- ... ...+|+..   |..++..++..+-.+.+..
T Consensus       218 kig~-~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEiq~tnseS~~  289 (458)
T KOG1266|consen  218 KIGS-VAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEIQSTNSESKV  289 (458)
T ss_pred             Eecc-cCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHheeccCCCccee
Confidence            7642 111111000    0   0111223344444431 111 23344444   8889988888775555543

>KOG3741|consensus

Probab=98.58  E-value=3.9e-07  Score=87.20  Aligned_cols=140  Identities=15%  Similarity=0.084  Sum_probs=105.5

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee----cCCeEEEEEEccC
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS----EPNSHYIIGVRQS   92 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~----~~~~~~ivmEy~~   92 (334)
                      --|+|....+|..|.+|.+.-.+.....+  -..-+++++++.|+|+        |.+.++|.    .+..+++|++|.+
T Consensus       291 Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk--~t~lve~wkkl~h~Nv--------V~frevf~t~tF~D~SlvlvYDYyP  360 (655)
T KOG3741|consen  291 TTYKATSNVDGNAYVLKRLHGDRDQSTNK--DTSLVEAWKKLCHTNV--------VPFREVFLTYTFGDLSLVLVYDYYP  360 (655)
T ss_pred             eeEeeeeccCCceeeeeeeccccccCccc--chHHHHHHHHhccCce--------eehhhhhhhhccCcceEEEEEecCC
Confidence            35888999999999999995443311111  1126889999999999        99999887    3467999999988


Q ss_pred             CC--h-hHHhhhhh----------hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          93 GP--K-DQISRSKI----------NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        93 g~--l-~~l~~~~~----------~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                      +.  + +.......          .......+..+|.++.|+..||.++|+.|                +.-+-|-|.+|
T Consensus       361 ~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssG----------------LAck~L~~~kI  424 (655)
T KOG3741|consen  361 SSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSG----------------LACKTLDLKKI  424 (655)
T ss_pred             CCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcC----------------ceeecccHhHe
Confidence            87  2 22211111          11233456788999999999999999999                88899999999


Q ss_pred             eeCCCCCEEEEecccccccCCCC
Q psy6542         160 LLDEHGHVRISDLGLACDFSKKK  182 (334)
Q Consensus       160 Ll~~~~~vkl~DFGla~~~~~~~  182 (334)
                      |++.+-.++|...|+...+..+.
T Consensus       425 lv~G~~RIriS~C~i~Dvl~~d~  447 (655)
T KOG3741|consen  425 LVTGKMRIRISGCGIMDVLQEDP  447 (655)
T ss_pred             EeeCcceEEEecccceeeecCCC
Confidence            99998889999888887665443

>KOG0601|consensus

Probab=98.54  E-value=5.6e-08  Score=94.12  Aligned_cols=134  Identities=18%  Similarity=0.076  Sum_probs=98.8

Q ss_pred             EEEeceeC-CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEEccCCC
Q psy6542          17 RVKPPSLK-PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP   94 (334)
Q Consensus        17 ~V~~a~~~-~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~   94 (334)
                      +|+..... .++..|++|.+............-..|+.+...+ .|.++        +.++..+......||--|||+|+
T Consensus       280 ~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~--------~g~~~~W~~~r~~~ip~e~~~~~  351 (524)
T KOG0601|consen  280 SVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPS--------VGKNSSWSQLRQGYIPLEFCEGG  351 (524)
T ss_pred             cceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhccccc--------CCCCCCccccccccCchhhhcCc
Confidence            44444434 7888999999887655332333334577777666 48888        99999999888889999999988


Q ss_pred             hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-CCEEEEecc
Q psy6542          95 KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-GHVRISDLG  173 (334)
Q Consensus        95 l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-~~vkl~DFG  173 (334)
                      ...+...-.   ........+.+..|++.++.++|+..                ++|+|+||+||++.++ +..++.|||
T Consensus       352 s~~l~~~~~---~~~d~~~~~~~~~q~~~~l~~i~s~~----------------~~~~d~~psni~i~~~~~~~~~~~~~  412 (524)
T KOG0601|consen  352 SSSLRSVTS---QMLDEDPRLRLTAQILTALNVIHSKL----------------FVHLDVKPSNILISNDGFFSKLGDFG  412 (524)
T ss_pred             chhhhhHHH---HhcCcchhhhhHHHHHhccccccchh----------------hhcccccccceeeccchhhhhccccc
Confidence            322222111   12234445667779999999999999                9999999999999887 778999999


Q ss_pred             cccc
Q psy6542         174 LACD  177 (334)
Q Consensus       174 la~~  177 (334)
                      .+..
T Consensus       413 ~~t~  416 (524)
T KOG0601|consen  413 CWTR  416 (524)
T ss_pred             cccc
Confidence            9875

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.33  E-value=3.8e-06  Score=74.85  Aligned_cols=122  Identities=17%  Similarity=0.085  Sum_probs=81.1

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCc------------------c--hHHhhhHHHHHHHHHhcCCC--CcccccccceeeE
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPH------------------E--SRVAKWRPYIQEIFNHLRNE--PFKKCVLLFKMNL   74 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~------------------~--~~~~~~~~~E~~il~~l~h~--~i~~~~~~~~v~~   74 (334)
                      -||.|.+.+ |.++|||.=+....                  +  .......++|.++|++|...  .+        .+-
T Consensus       106 dVY~~~~~~-g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~V--------P~P  176 (304)
T COG0478         106 DVYVAIDPK-GRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKV--------PKP  176 (304)
T ss_pred             eEEEEECCC-CCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCC--------CCc
Confidence            589888875 88999998664321                  0  11122456799999998765  34        333


Q ss_pred             EEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeC
Q psy6542          75 YKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRD  153 (334)
Q Consensus        75 ~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrD  153 (334)
                      +    +.++..+||||++|- +..+..      .......++.   .|+.-+.-+-..|                ++|+|
T Consensus       177 ~----~~nRHaVvMe~ieG~eL~~~r~------~~en~~~il~---~il~~~~~~~~~G----------------iVHGD  227 (304)
T COG0478         177 I----AWNRHAVVMEYIEGVELYRLRL------DVENPDEILD---KILEEVRKAYRRG----------------IVHGD  227 (304)
T ss_pred             c----ccccceeeeehcccceeecccC------cccCHHHHHH---HHHHHHHHHHHcC----------------ccccC
Confidence            3    567889999999997 322211      1112222222   3333344333677                99999


Q ss_pred             CCCCceeeCCCCCEEEEeccccc
Q psy6542         154 LKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       154 lKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      +.+=||+++++|.+.++||==+.
T Consensus       228 lSefNIlV~~dg~~~vIDwPQ~v  250 (304)
T COG0478         228 LSEFNILVTEDGDIVVIDWPQAV  250 (304)
T ss_pred             CchheEEEecCCCEEEEeCcccc
Confidence            99999999999999999997554

>KOG0606|consensus

Probab=98.30  E-value=2.4e-07  Score=94.85  Aligned_cols=231  Identities=16%  Similarity=0.117  Sum_probs=137.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +.+.-++..+.-..+|-..++|+..+... .....+....+-.++-.-++|-+        +..+..+......+++|+|
T Consensus       814 S~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v--------~~~~~s~~~rsP~~L~~~~  885 (1205)
T KOG0606|consen  814 SGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAV--------VRSFPSFPCRSPLPLVGHY  885 (1205)
T ss_pred             CCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCce--------ecccCCCCCCCCcchhhHH
Confidence            44555667777777776777777665443 11111122223334334445555        7666666677889999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .+|+.-.-+.+...........   ..+..+..+++|||...                +.|||++|.|+|...+|+.++.
T Consensus       886 ~~~~~~~Skl~~~~~~saepaR---s~i~~~vqs~e~L~s~~----------------r~h~~~~p~~~l~~~~gh~~l~  946 (1205)
T KOG0606|consen  886 LNGGDLPSKLHNSGCLSAEPAR---SPILERVQSLESLHSSL----------------RKHRDLKPDSLLIAYDGHRPLT  946 (1205)
T ss_pred             hccCCchhhhhcCCCccccccc---chhHHHHhhhhccccch----------------hhcccccccchhhcccCCcccC
Confidence            9887211112211122222232   33348889999999998                9999999999999999999999


Q ss_pred             ecccccccCCC---------------------------------CCCccccCccccccccc-cccCCcceeeh----hHH
Q psy6542         171 DLGLACDFSKK---------------------------------KPHASVESDCILHGYIK-KLGGPFVSAWQ----TRY  212 (334)
Q Consensus       171 DFGla~~~~~~---------------------------------~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~  212 (334)
                      |||+.......                                 ......||+-|..|+.. .......++||    +++
T Consensus       947 ~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~ 1026 (1205)
T KOG0606|consen  947 DFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLF 1026 (1205)
T ss_pred             ccccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhh
Confidence            99844321000                                 02244667888888873 44455667798    666


Q ss_pred             HHHcCCCCCCCCCCCCCcccchhccccccccccc-ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         213 AKLFPNRLELHPESGQSKPELIFMDQIEEVSQDL-ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +.+. +.+||........++-+....+....... ........+...+..++..|++..
T Consensus      1027 e~l~-g~pp~na~tpq~~f~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1027 EVLT-GIPPFNAETPQQIFENILNRDIPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             hhhc-CCCCCCCcchhhhhhccccCCCCCCCCccccChhhhhhhhhhhccCchhccCcc
Confidence            7655 45577777666666666655443211111 111233334444455666666654

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.19  E-value=1.3e-05  Score=69.90  Aligned_cols=67  Identities=19%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             CeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCcee
Q psy6542          82 NSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANIL  160 (334)
Q Consensus        82 ~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiL  160 (334)
                      ...+++|||++|- +..+     ...   .+ .   +...+..++.-+|..|                +.|+|..|.|++
T Consensus       116 ~~~~ll~EYIeG~~l~d~-----~~i---~e-~---~~~ki~~~ikqlH~~G----------------~~HGD~hpgNFl  167 (229)
T PF06176_consen  116 SSYVLLMEYIEGVELNDI-----EDI---DE-D---LAEKIVEAIKQLHKHG----------------FYHGDPHPGNFL  167 (229)
T ss_pred             eEEEEEEEEecCeecccc-----hhc---CH-H---HHHHHHHHHHHHHHcC----------------CccCCCCcCcEE
Confidence            3467899999997 3111     011   11 1   1226777889999999                999999999999


Q ss_pred             eCCCCCEEEEecccccc
Q psy6542         161 LDEHGHVRISDLGLACD  177 (334)
Q Consensus       161 l~~~~~vkl~DFGla~~  177 (334)
                      +++++ ++++||+-.+.
T Consensus       168 v~~~~-i~iID~~~k~~  183 (229)
T PF06176_consen  168 VSNNG-IRIIDTQGKRM  183 (229)
T ss_pred             EECCc-EEEEECccccc
Confidence            98655 99999987653

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.18  E-value=4.7e-05  Score=67.85  Aligned_cols=138  Identities=15%  Similarity=0.103  Sum_probs=86.8

Q ss_pred             CceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCC-CcccccccceeeEEEEeecCCeEEEEEEccC
Q psy6542          14 SKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNE-PFKKCVLLFKMNLYKVTSEPNSHYIIGVRQS   92 (334)
Q Consensus        14 ~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~-~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~   92 (334)
                      +...||++...  +..+.||+.....     ...+.+|+++++.+... .+        .+++++...++..++|||+++
T Consensus        11 ~~~~v~~~~~~--~~~~~vk~~~~~~-----~~~~~~E~~~l~~l~~~~~v--------P~v~~~~~~~~~~~lv~e~i~   75 (244)
T cd05150          11 SGATVYRLDGK--NPGLYLKIAPSGP-----TYELEREAERLRWLAGKLPV--------PEVIDYGSDDGRAWLLTSAVP   75 (244)
T ss_pred             CcCeEEEEcCC--CCcEEEEecCCCc-----ccchHHHHHHHHHHHhcCCC--------CeEEEEEecCCccEEEEEeeC
Confidence            44677777653  3578888776432     22455699999888632 33        688887777677899999999


Q ss_pred             CC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCC-c----------------------------------
Q psy6542          93 GP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKN-P----------------------------------  136 (334)
Q Consensus        93 g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~-~----------------------------------  136 (334)
                      |. +.....       .....   .++.|+...|.-||+....+ +                                  
T Consensus        76 G~~l~~~~~-------~~~~~---~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (244)
T cd05150          76 GVPAAALWE-------ELEPE---RLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWS  145 (244)
T ss_pred             CccHhHhhc-------ccCHH---HHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCC
Confidence            97 321110       00111   12236666666666542111 0                                  


Q ss_pred             hhhhh-------hcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         137 LIAIF-------LTLSVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       137 ~~~~~-------~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      +-.+.       -+...|.++|+|+.|.|||+++++.+.|+||+.|.
T Consensus       146 ~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         146 AEELYAELEATRPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             HHHHHHHHHhhCCCcCceEEECCCCCCccEEEeCCcEEEEEEccccc
Confidence            00000       02245778999999999999998778999999875

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.16  E-value=1.5e-05  Score=78.40  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=31.2

Q ss_pred             EEeeCCCCCceeeCCCCCEEEEecccccccCCCC
Q psy6542         149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKK  182 (334)
Q Consensus       149 iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~  182 (334)
                      +.|.|..|-||+++.+|.+.+.|||+...+....
T Consensus       286 ffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~~~  319 (517)
T COG0661         286 FFHADPHPGNILVRSDGRIVLLDFGIVGRLDPKF  319 (517)
T ss_pred             ccccCCCccceEEecCCcEEEEcCcceecCCHHH
Confidence            9999999999999999999999999998776653

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.16  E-value=6.4e-05  Score=66.46  Aligned_cols=139  Identities=9%  Similarity=-0.071  Sum_probs=84.1

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCC--cccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEP--FKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~--i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      |..-.||+.    .|..+++|.......    .....+|.++++.+..-.  +        .+.+++....+..++|||+
T Consensus        12 G~t~~~y~~----~~~~~VlR~~~~~~~----~~~i~~E~~~l~~l~~~glpv--------P~~~~~~~~~~~~glv~e~   75 (226)
T TIGR02172        12 GGNGESYTH----KTGKWMLKLYNPGFD----KETIKREFDASRKVFSLGIPT--------PHPFDLVEDGGRLGLIYEL   75 (226)
T ss_pred             CCCcceeEe----cCCCEEEEeCCCCCC----HHHHHHHHHHHHHHHHcCCCC--------CceEEEEecCCeeeeeeee
Confidence            334466653    255677887764332    223567999999886432  4        6778888888888999999


Q ss_pred             cCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCc------------------hh----h-hh----
Q psy6542          91 QSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNP------------------LI----A-IF----  141 (334)
Q Consensus        91 ~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~------------------~~----~-~~----  141 (334)
                      ++|.  .......     ......   .+..+++..+.-||+....+.                  .+    . +.    
T Consensus        76 i~G~~~~~~~~~~-----~~~~~~---~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~  147 (226)
T TIGR02172        76 IVGKRSFSRIISD-----NPSRLE---EIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIK  147 (226)
T ss_pred             cCCccchhhhhcC-----CHHHHH---HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            9996  2111110     011111   122355555666665321110                  00    0 00    


Q ss_pred             hcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         142 LTLSVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       142 ~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      .-...+.++|+|+.|.||++++++ +.++||+.+.
T Consensus       148 ~~~~~~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       148 EVPDTSTCLHGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             hCCCCCceEecCCCCCcEEEcCCC-cEEEechhcC
Confidence            012456678999999999999988 9999999875

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG1235|consensus

Probab=98.01  E-value=3.7e-05  Score=75.48  Aligned_cols=140  Identities=18%  Similarity=0.181  Sum_probs=82.5

Q ss_pred             CceEEEeceeCCCCCcEEEEEeeCCCc-----------------------------chHHhhhHHHHHHH----------
Q psy6542          14 SKWRVKPPSLKPLGFPIQIGMLRHRPH-----------------------------ESRVAKWRPYIQEI----------   54 (334)
Q Consensus        14 ~~~~V~~a~~~~~~~~vAIK~l~~~~~-----------------------------~~~~~~~~~~E~~i----------   54 (334)
                      |-.+|++|+.+. |+.||||+-++.-.                             -++..+.+..|++.          
T Consensus       173 SlaQVhrA~L~~-G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~Nae~~  251 (538)
T KOG1235|consen  173 SLAQVHRARLKN-GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAKNAERF  251 (538)
T ss_pred             chhheEEEEecC-CCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHHhHHHH
Confidence            456999999998 99999999876421                             12222333333332          


Q ss_pred             HHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC----hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy6542          55 FNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP----KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS  130 (334)
Q Consensus        55 l~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~----l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~  130 (334)
                      .+.++|-+...  -.-+.++|..+.  ..-.++||||+|.    ++.+....+...      .+..-+.+...  .-+-.
T Consensus       252 ~~~f~~~~~~~--~V~VP~Vy~~~s--t~RVLtME~~~G~~i~Dl~~i~~~gi~~~------~i~~~l~~~~~--~qIf~  319 (538)
T KOG1235|consen  252 RENFKDFSLLT--YVLVPKVYWDLS--TKRVLTMEYVDGIKINDLDAIDKRGISPH------DILNKLVEAYL--EQIFK  319 (538)
T ss_pred             HHHHHhccccc--ceeCCeehhhcC--cceEEEEEecCCccCCCHHHHHHcCCCHH------HHHHHHHHHHH--HHHHh
Confidence            22344444100  001144454433  3457899999997    455545443222      22221112222  22234


Q ss_pred             CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC----CCCEEEEecccccccCCCC
Q psy6542         131 ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE----HGHVRISDLGLACDFSKKK  182 (334)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~----~~~vkl~DFGla~~~~~~~  182 (334)
                      .|                ++|.|-.|-||++..    ++.+.+.|||+........
T Consensus       320 ~G----------------ffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~~~  359 (538)
T KOG1235|consen  320 TG----------------FFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISHKT  359 (538)
T ss_pred             cC----------------CccCCCCCCcEEEecCCCCCccEEEEcccccccccHHH
Confidence            55                999999999999984    5679999999998766554

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=97.94  E-value=0.00021  Score=62.45  Aligned_cols=70  Identities=10%  Similarity=-0.018  Sum_probs=45.7

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee---cCCeEEEEEE
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS---EPNSHYIIGV   89 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~---~~~~~~ivmE   89 (334)
                      +..-+||+.....  ..+++|.....    .....+.+|..+++.+....+   -   +.+++....   .....+++|+
T Consensus         8 G~~n~~~~v~~~~--~~~vlK~~~~~----~~~~~~~~e~~~~~~l~~~~~---p---vP~~~~~~~~~~~~~~~~~~~~   75 (239)
T PF01636_consen    8 GFSNRVYRVTTDD--GRYVLKFYRPP----DAAERLRREAAVLRQLAEHGI---P---VPRVLAFDTSDEFNGFPYLLME   75 (239)
T ss_dssp             SSSSEEEEEEETT--SEEEEEEESSH----HHHHHHHHHHHHHHHHHHTTS---B---S--EEEEEEETEETSEEEEEEE
T ss_pred             CCeeeEEEEEECC--cEEEEEEeCCC----CCHHHHHHHHHHHHHHHhcCC---C---CceEEeecccccccccceEEEE
Confidence            3445788887766  38999987643    244566779999888864432   0   145555332   3445799999


Q ss_pred             ccCCC
Q psy6542          90 RQSGP   94 (334)
Q Consensus        90 y~~g~   94 (334)
                      +++|.
T Consensus        76 ~i~g~   80 (239)
T PF01636_consen   76 YIPGR   80 (239)
T ss_dssp             EESSE
T ss_pred             Eeccc
Confidence            99998

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PRK09902 hypothetical protein; Provisional

Probab=97.94  E-value=6e-05  Score=65.40  Aligned_cols=111  Identities=9%  Similarity=0.001  Sum_probs=75.3

Q ss_pred             hhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEEEEEEccCCC--hhHHhhh-hhhhhhHHHHHHHHHHHH
Q psy6542          45 AKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHYIIGVRQSGP--KDQISRS-KINRYHKKLRKCFIRRTV  119 (334)
Q Consensus        45 ~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~ivmEy~~g~--l~~l~~~-~~~~~~~~~~~~~~~i~~  119 (334)
                      ...|.+|+..++.|..-++.   .+-.+ +.+....+  ..-+||+|-++|-  ++.+... .....+.....   .++.
T Consensus        63 ~ptf~rE~~~L~~L~~~GvP---VP~pv-f~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~---~il~  135 (216)
T PRK09902         63 RPTIVREVAVIKELERAGVI---VPKIV-FGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQ---AMLK  135 (216)
T ss_pred             chHHHHHHHHHHHHHHcCCC---CCccc-eeeeeccCCceEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHH---HHHH
Confidence            34677899999999876651   12223 33333222  3468999999876  4444332 22222222223   3445


Q ss_pred             HHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC--EEEEeccccccc
Q psy6542         120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH--VRISDLGLACDF  178 (334)
Q Consensus       120 qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~--vkl~DFGla~~~  178 (334)
                      +++..+.-||+.+                +.|+|+-+.||+++.+|.  ++++||--++..
T Consensus       136 ~va~~ia~LH~~G----------------v~Hgdly~khIll~~~g~~~v~lIDlEk~r~~  180 (216)
T PRK09902        136 AVALAFKKMHSVN----------------RQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRR  180 (216)
T ss_pred             HHHHHHHHHHHCC----------------CcCCCCCHhheeecCCCCeeEEEEEhhccchh
Confidence            9999999999999                999999999999987777  999999977643

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.82  E-value=0.0003  Score=62.20  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=26.6

Q ss_pred             CcEEeeCCCCCceeeCC-CCCEEEEeccccc
Q psy6542         147 PCLHFRDLKPANILLDE-HGHVRISDLGLAC  176 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~-~~~vkl~DFGla~  176 (334)
                      +.++|+|+.+.|||++. ++.+.++||-.|.
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            45889999999999998 5789999999875

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PLN02876 acyl-CoA dehydrogenase

Probab=97.69  E-value=0.00069  Score=71.09  Aligned_cols=152  Identities=11%  Similarity=-0.038  Sum_probs=83.5

Q ss_pred             ceEEEeceeCCCC--CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecC---CeEEEEE
Q psy6542          15 KWRVKPPSLKPLG--FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEP---NSHYIIG   88 (334)
Q Consensus        15 ~~~V~~a~~~~~~--~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~---~~~~ivm   88 (334)
                      +-.+|+......+  ..+++|+........ ....+.+|+++|+.+. |+++      -+.+.+.++.+.   +..|+||
T Consensus        51 sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~-~~~~~~rE~~~l~~L~~~~~v------pVP~v~~~~~d~~v~G~~flVM  123 (822)
T PLN02876         51 SNPTFLLEVGNGGSVKRYVLRKKPPGKLLQ-SAHAVEREYQVLRALGEHTDV------PVPKVYCLCTDASVIGTAFYIM  123 (822)
T ss_pred             cCceEEEEECCCCcceeEEEEeCCCCccCc-cHHHHHHHHHHHHHHhhcCCC------CCCcEEEEecCCCcCCCceEEE
Confidence            3355555443322  356667654332211 1235678999999996 6553      116777776654   4678999


Q ss_pred             EccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC-------Cc--------h----------------
Q psy6542          89 VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNK-------NP--------L----------------  137 (334)
Q Consensus        89 Ey~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~-------~~--------~----------------  137 (334)
                      ||++|..-  .........+   .....+..|++.+|..||.....       +.        +                
T Consensus       124 E~v~G~~~--~~~~~~~~~~---~~r~~l~~~l~~~La~LH~vd~~~~gl~~~g~~~~~~~~~l~~w~~~~~~~~~~~~~  198 (822)
T PLN02876        124 EYLEGRIF--VDPKLPGVAP---ERRRAIYRATAKVLAALHSADVDAIGLGKYGRRDNYCKRQVERWAKQYLASTGEGKP  198 (822)
T ss_pred             EecCCccc--CCccCCCCCH---HHHHHHHHHHHHHHHHHhCCCchhcChhhcCCCCchHHHHHHHHHHHHHHhhcccCC
Confidence            99998720  0000001111   11123334677777777763210       00        0                


Q ss_pred             ---h---hhhhcC----C-------CCcEEeeCCCCCceeeCCC-CC-EEEEeccccccc
Q psy6542         138 ---I---AIFLTL----S-------VPCLHFRDLKPANILLDEH-GH-VRISDLGLACDF  178 (334)
Q Consensus       138 ---~---~~~~~~----~-------~~~iiHrDlKp~NiLl~~~-~~-vkl~DFGla~~~  178 (334)
                         +   .+.-|.    .       .+.++|+|+++.|+|++.+ +. +-|.||.++..-
T Consensus       199 ~~~~~~~~l~~wL~~~~P~~~~~~~~~~LvHGD~~~~Nvl~~~~~~~v~aVLDWE~a~~G  258 (822)
T PLN02876        199 PRNPKMLELIDWLRENIPAEDSTGAGTGIVHGDFRIDNLVFHPTEDRVIGILDWELSTLG  258 (822)
T ss_pred             CCChhHHHHHHHHHhcCCCccccCCCcceEecCcccccEEEcCCCCeEEEEEeeeccccC
Confidence               0   000011    1       2569999999999999853 34 579999998743

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.69  E-value=0.00017  Score=61.83  Aligned_cols=104  Identities=15%  Similarity=0.173  Sum_probs=76.1

Q ss_pred             HHHHHHHHhcCC-CCcccccccceeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6542          49 PYIQEIFNHLRN-EPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVH  126 (334)
Q Consensus        49 ~~E~~il~~l~h-~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~  126 (334)
                      ..|.-+++.+.+ +++        .+++|++-    -++|+||...+ +..+ ......+........+.++.|++..+.
T Consensus         7 ~~E~lll~~l~~~~~~--------pk~lG~CG----~~~v~E~~~~~~~~~~-~~~l~~~~~~~w~~R~~iA~~lL~~l~   73 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPF--------PKLLGSCG----RFYVVEYVGAGSLYGI-YRPLSQFLQSPWEQRAKIALQLLELLE   73 (188)
T ss_pred             ccHHHHHHHcCCCCCC--------CCeeeECC----CEEEEEeecCcccccc-ccccccccccCHHHHHHHHHHHHHHHH
Confidence            358889999987 578        99999982    36689999865 2111 111122233355566788889999999


Q ss_pred             HhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccccc
Q psy6542         127 TCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDF  178 (334)
Q Consensus       127 yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~  178 (334)
                      ++++... +           + +.-.|++|+|+-+++++.+|++|...+...
T Consensus        74 ~l~~~~~-~-----------~-~~lcDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   74 ELDHGPL-G-----------F-FYLCDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             HHhcCCC-C-----------c-EEEeecchHHeEEeCCCcEEEEechhcchh
Confidence            9988431 1           1 778999999999999999999999987644

Proteins in this uncharacterised family are described as transmembrane proteins.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.67  E-value=0.00048  Score=61.88  Aligned_cols=133  Identities=14%  Similarity=0.050  Sum_probs=75.4

Q ss_pred             eEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC-
Q psy6542          16 WRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-   94 (334)
Q Consensus        16 ~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-   94 (334)
                      ..+|+..  .+|..+.+|........  ..-...+|.++++.+....+    .   .+++....    -++||||++|. 
T Consensus        10 n~~y~~~--~~~~~~vlR~~~~~~~~--~~~~r~~E~~~l~~l~~~g~----~---P~~i~~~~----~~~v~e~i~G~~   74 (256)
T TIGR02721        10 NRSWRIE--HPGISFVWRPQSPVCKA--LGVDRQREYQILQALSALGL----A---PKPILVNE----HWLLVEWLEGEV   74 (256)
T ss_pred             CCeEEEE--eCCccEEEeeCCccccc--ccCcHHHHHHHHHHHHhcCC----C---CceEEEeC----CEEEEEeccCcc
Confidence            3455544  34667888875533211  11234669999999875443    1   34443332    26899999996 


Q ss_pred             hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCch--------------------------hhhhhcC----
Q psy6542          95 KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPL--------------------------IAIFLTL----  144 (334)
Q Consensus        95 l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~--------------------------~~~~~~~----  144 (334)
                      .+.-   .   ..  ..    ..+.+++..|.-||+....+..                          ...+...    
T Consensus        75 ~~~~---~---~~--~~----~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  142 (256)
T TIGR02721        75 ITLD---Q---FV--AL----DLLLELAALLHQLHSQPRFGYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPA  142 (256)
T ss_pred             cccc---c---cc--Cc----hhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCC
Confidence            2110   0   00  00    1123566666666654322110                          0001111    


Q ss_pred             -CCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         145 -SVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       145 -~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                       ..+.++|+|+.|.||+++.++ +.|+||..|.
T Consensus       143 ~~~~~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~  174 (256)
T TIGR02721       143 PLPLAPLHMDVHAYNLVVTPQG-LKLIDWEYAS  174 (256)
T ss_pred             CCCCeeecCCCCcCcEEEeCCC-CEEEeccccC
Confidence             134689999999999999877 7899999875

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=97.66  E-value=0.00041  Score=65.51  Aligned_cols=128  Identities=13%  Similarity=0.061  Sum_probs=95.0

Q ss_pred             eEEEEEEccCCC--hhHHhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCc
Q psy6542          83 SHYIIGVRQSGP--KDQISR--SKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPAN  158 (334)
Q Consensus        83 ~~~ivmEy~~g~--l~~l~~--~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~N  158 (334)
                      .+-+.|..+.|-  ...+..  ....+++.....+++.....++.+..-||..|                .+-+|+.++|
T Consensus        84 ~iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~G----------------h~vGDVn~~~  147 (637)
T COG4248          84 VIGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHG----------------HVVGDVNQNS  147 (637)
T ss_pred             eeEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcC----------------CcccccCccc
Confidence            478889888886  222212  22345666678888889999999999999999                8899999999


Q ss_pred             eeeCCCCCEEEEecccccccCCCCC-CccccCcccccccccccc-------CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         159 ILLDEHGHVRISDLGLACDFSKKKP-HASVESDCILHGYIKKLG-------GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       159 iLl~~~~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~~-------~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|+++++.|.|.|=..-.....+.. ....|.+.|+|||....+       ....|.+-   ++|+++++++-||.|..
T Consensus       148 ~lVsd~~~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~  226 (637)
T COG4248         148 FLVSDDSKVVLVDSDSFQINANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIP  226 (637)
T ss_pred             eeeecCceEEEEcccceeeccCCceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCccc
Confidence            9999999999998555444334332 346788999999984422       23444454   88999999999987764

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.64  E-value=0.0009  Score=57.85  Aligned_cols=119  Identities=14%  Similarity=0.121  Sum_probs=77.8

Q ss_pred             CCCCCcEEEEEeeCCCc--------------chHHhhhHHHHHHHHHhcC------CCCcccccccceeeEEEEeecCCe
Q psy6542          24 KPLGFPIQIGMLRHRPH--------------ESRVAKWRPYIQEIFNHLR------NEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        24 ~~~~~~vAIK~l~~~~~--------------~~~~~~~~~~E~~il~~l~------h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      ...+....||+.++...              .....+...+|+.....+.      +.+|        .++|++.+++..
T Consensus        20 HP~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i--------~r~~G~veT~~G   91 (199)
T PF10707_consen   20 HPDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHI--------PRFYGFVETNLG   91 (199)
T ss_pred             CCCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCccccc--------ccEeEEEecCCc
Confidence            34456678999987761              1123456677888877777      5566        999999999999


Q ss_pred             EEEEEEccCC---C----hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCC
Q psy6542          84 HYIIGVRQSG---P----KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKP  156 (334)
Q Consensus        84 ~~ivmEy~~g---~----l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp  156 (334)
                      .-+|+|.+..   .    ++.+....  .+..    .+..   .+-.-..||-+..                |+.+|++|
T Consensus        92 ~Glv~e~I~d~dG~~s~TL~~~l~~~--~~~~----~~~~---~L~~f~~~l~~~~----------------Iv~~dl~~  146 (199)
T PF10707_consen   92 LGLVVELIRDADGNISPTLEDYLKEG--GLTE----ELRQ---ALDEFKRYLLDHH----------------IVIRDLNP  146 (199)
T ss_pred             eEEEEEEEECCCCCcCccHHHHHHcC--CccH----HHHH---HHHHHHHHHHHcC----------------CeecCCCc
Confidence            9999997633   2    33332221  1211    2222   3333445777777                99999999


Q ss_pred             CceeeCCC--C--CEEEEe-cccc
Q psy6542         157 ANILLDEH--G--HVRISD-LGLA  175 (334)
Q Consensus       157 ~NiLl~~~--~--~vkl~D-FGla  175 (334)
                      .||++...  +  .+.|+| ||-.
T Consensus       147 ~NIv~~~~~~~~~~lvlIDG~G~~  170 (199)
T PF10707_consen  147 HNIVVQRRDSGEFRLVLIDGLGEK  170 (199)
T ss_pred             ccEEEEecCCCceEEEEEeCCCCc
Confidence            99999544  2  477888 6643

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.59  E-value=0.00093  Score=59.22  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=26.7

Q ss_pred             CCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         145 SVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       145 ~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      ..+.++|+|+.+.||++++++...|+||+.|.
T Consensus       162 ~~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         162 GPPVWFHGDLAPGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             CCceEEeCCCCCCcEEEECCCEEEEEeCcccC
Confidence            34558999999999999876656799999875

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.53  E-value=0.00087  Score=61.67  Aligned_cols=32  Identities=28%  Similarity=0.314  Sum_probs=27.8

Q ss_pred             CCCcEEeeCCCCCceeeCCC----CCEEEEeccccc
Q psy6542         145 SVPCLHFRDLKPANILLDEH----GHVRISDLGLAC  176 (334)
Q Consensus       145 ~~~~iiHrDlKp~NiLl~~~----~~vkl~DFGla~  176 (334)
                      ....++|.|+.|.|||++++    +.+.++||..|.
T Consensus       177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            44568899999999999985    889999999875

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.50  E-value=0.001  Score=58.97  Aligned_cols=134  Identities=13%  Similarity=0.036  Sum_probs=81.8

Q ss_pred             eEEEeceeCCCCCcEEEEEeeCCCc----------------------chHHhhhHHHHHHHHHhcCCCCcccccccceee
Q psy6542          16 WRVKPPSLKPLGFPIQIGMLRHRPH----------------------ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMN   73 (334)
Q Consensus        16 ~~V~~a~~~~~~~~vAIK~l~~~~~----------------------~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~   73 (334)
                      -.||+|.. ..+..||+|+.+....                      ......+...|+.-|+++....+      -+.+
T Consensus        62 A~Vy~a~~-~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGV------rvP~  134 (268)
T COG1718          62 ANVYLAET-GDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGV------RVPE  134 (268)
T ss_pred             eEEEeecc-CCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCC------CCCC
Confidence            47999876 3488999999875432                      01111245567777777655443      0022


Q ss_pred             EEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEe
Q psy6542          74 LYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHF  151 (334)
Q Consensus        74 ~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiH  151 (334)
                      -+.+.    .-.+||||++.. .-.-.........+ ....+..   +++..+.-|-. .+                ++|
T Consensus       135 Pi~~~----~nVLvMEfIg~~g~pAP~LkDv~~e~~-e~~~~~~---~~v~~~~~l~~~a~----------------LVH  190 (268)
T COG1718         135 PIAFR----NNVLVMEFIGDDGLPAPRLKDVPLELE-EAEGLYE---DVVEYMRRLYKEAG----------------LVH  190 (268)
T ss_pred             ceeec----CCeEEEEeccCCCCCCCCcccCCcCch-hHHHHHH---HHHHHHHHHHHhcC----------------ccc
Confidence            23222    347899998766 21111111111111 1222333   66676766655 77                999


Q ss_pred             eCCCCCceeeCCCCCEEEEecccccccCCC
Q psy6542         152 RDLKPANILLDEHGHVRISDLGLACDFSKK  181 (334)
Q Consensus       152 rDlKp~NiLl~~~~~vkl~DFGla~~~~~~  181 (334)
                      +||..=|||+. ++.+.++|||=|......
T Consensus       191 gDLSEyNiL~~-~~~p~iID~~QaV~~~hp  219 (268)
T COG1718         191 GDLSEYNILVH-DGEPYIIDVSQAVTIDHP  219 (268)
T ss_pred             ccchhhheEEE-CCeEEEEECccccccCCC
Confidence            99999999999 788999999988766544

>PLN02236 choline kinase

Probab=97.36  E-value=0.0025  Score=59.95  Aligned_cols=136  Identities=13%  Similarity=0.029  Sum_probs=76.5

Q ss_pred             eEEEeceeC----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          16 WRVKPPSLK----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        16 ~~V~~a~~~----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      -++|++...    .+++.|.+|+......   ..-...+|..+++.+...++       ..++++.+..+    .|.||+
T Consensus        50 N~~y~v~~~~~~~~~~~~~v~Ri~g~~t~---~~idR~~E~~~~~~l~~~gl-------~P~~~~~~~~g----~v~efi  115 (344)
T PLN02236         50 NEVFQIKWPTKEGNLGRKVLVRIYGEGVE---LFFDRDDEIRTFECMSRHGQ-------GPRLLGRFPNG----RVEEFI  115 (344)
T ss_pred             ceeEEEEeCCCCCCCCCeEEEEEccCCCC---eeechHHHHHHHHHHHHcCC-------CCceEEEECCc----eEEEee
Confidence            356665422    2356788887765432   11123569999999876665       25666666432    479999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCch-hh------------------------------
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPL-IA------------------------------  139 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~-~~------------------------------  139 (334)
                      +|. ++.-   ..      ...   .+..+++..|.-+|+...+++. +.                              
T Consensus       116 ~g~~l~~~---~l------~~~---~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~  183 (344)
T PLN02236        116 HARTLSAA---DL------RDP---EISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLE  183 (344)
T ss_pred             CCCCCCHH---Hc------CCh---HHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHH
Confidence            775 2110   00      000   0112444555555543321110 00                              


Q ss_pred             ---------hhhcCCCCcEEeeCCCCCceeeCC-CCCEEEEecccccc
Q psy6542         140 ---------IFLTLSVPCLHFRDLKPANILLDE-HGHVRISDLGLACD  177 (334)
Q Consensus       140 ---------~~~~~~~~~iiHrDlKp~NiLl~~-~~~vkl~DFGla~~  177 (334)
                               +........++|+|+++.|||+++ ++.+.++||..|..
T Consensus       184 ~~~~~L~~~~~~~~~~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~  231 (344)
T PLN02236        184 DEINLLEKELSGDDQEIGFCHNDLQYGNIMIDEETRAITIIDYEYASY  231 (344)
T ss_pred             HHHHHHHHHhcccCCCceEEeCCCCcCcEEEeCCCCcEEEEeehhccc
Confidence                     001122346789999999999986 46799999998863

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=97.26  E-value=0.0057  Score=56.65  Aligned_cols=146  Identities=16%  Similarity=0.054  Sum_probs=85.6

Q ss_pred             ceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCC--CcccccccceeeEEEEeecCC--eEEEEEEc
Q psy6542          15 KWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNE--PFKKCVLLFKMNLYKVTSEPN--SHYIIGVR   90 (334)
Q Consensus        15 ~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~--~i~~~~~~~~v~~~~~~~~~~--~~~ivmEy   90 (334)
                      +=.+|.....  ++.+.+. ...............+|..+++.+.--  .+        ...++.+.++.  ..|.||+|
T Consensus        38 sn~t~~~~~~--~~~~vlR-~P~~~~~~~~~~~~~re~~~i~~l~~~~vP~--------p~~~~~~~~~~~g~pf~v~~~  106 (321)
T COG3173          38 SNDTFRLGDT--GQKYVLR-KPPRGDPVESAHDEKREYRVIAALLDVDVPV--------PRAFGLCGEGYLGTPFYVMEW  106 (321)
T ss_pred             ccceEEEecC--CceEEEe-cCCccccchhhhHHHhHHHHHHHhcCCCCCC--------cccccccccCCCCCceEEEEE
Confidence            3344444433  6777777 221112222333455688888877542  23        56666776655  67999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCC--------CC----c----------------------
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALN--------KN----P----------------------  136 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~--------~~----~----------------------  136 (334)
                      ++|..-   ......... ...+..   ..+...|.-||+-..        .+    +                      
T Consensus       107 veGe~~---~~~~~~~~~-~~~~~~---~~l~~~La~LH~ida~~~~~~g~~~~~~~rql~~~~~~~~~~~~~~~~~~p~  179 (321)
T COG3173         107 VEGEVV---WSALPPESL-GRQFAL---DALADFLAELHSIDAAGLPDPGKPNAYRGRQLARWDDEYRRAKKELGGRIPL  179 (321)
T ss_pred             ecceec---cCcCCcccc-hHHHHH---HHHHHHHHHHhCCCCcCCCCCCccCccccchhhHHHHHHHHHHHhccCCCch
Confidence            999510   000000000 111111   266667777775210        00    0                      


Q ss_pred             -------hhhhhh-cCCCCcEEeeCCCCCceeeCCCCCEEEEeccccccc
Q psy6542         137 -------LIAIFL-TLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDF  178 (334)
Q Consensus       137 -------~~~~~~-~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~  178 (334)
                             +.+.-. +...|+++|+|+.+.|++++..+-+-|+||+++..-
T Consensus       180 ~~~~~~Wl~~~~p~~~~~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lG  229 (321)
T COG3173         180 ADRLIKWLEANRPPWAGPPVLVHGDYRPGNLIIDPGRPTGVLDWELATLG  229 (321)
T ss_pred             HHHHHHHHHhcCCCcCCCceeeeCCcccCCEEEeCCCeeEEEeccccccC
Confidence                   122222 788899999999999999999999999999998643

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=97.16  E-value=0.004  Score=58.24  Aligned_cols=126  Identities=13%  Similarity=0.101  Sum_probs=72.9

Q ss_pred             CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhh
Q psy6542          27 GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINR  105 (334)
Q Consensus        27 ~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~  105 (334)
                      +..|.+|+......   ..-...+|..+++.+...++       ..++++++. ++   +|.+|++|. ++.   ...  
T Consensus        42 ~~~~v~Ri~g~~t~---~~IdR~~E~~il~~l~~~gl-------~P~~l~~~~-~G---~i~~fi~g~~l~~---~~l--  102 (330)
T PLN02421         42 EVSVTVRLFGPNTD---YVIDRERELQAIKYLSAAGF-------GAKLLGVFG-NG---MIQSFINARTLTP---SDM--  102 (330)
T ss_pred             CceEEEEEecCCcC---eEechHHHHHHHHHHHhcCC-------CCceeEEeC-Cc---EeehhhcCCCCCh---HHC--
Confidence            34788887765432   11223459999999887665       246666653 22   588999776 211   000  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCc-hhh-------------------------------------------hh
Q psy6542         106 YHKKLRKCFIRRTVQLLEPVHTCHSALNKNP-LIA-------------------------------------------IF  141 (334)
Q Consensus       106 ~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~-~~~-------------------------------------------~~  141 (334)
                       .  .. .   .+.+++..|..||+..-++. .+.                                           +.
T Consensus       103 -~--~~-~---~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~  175 (330)
T PLN02421        103 -R--KP-K---VAAEIAKELRRLHQVEIPGSKEPQLWNDIFKFYEKASTVKFEDPEKQKKYETISFEELRDEIVELKEIT  175 (330)
T ss_pred             -C--CH-H---HHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHhhhcccCcHHHhhhhcccCHHHHHHHHHHHHHHh
Confidence             0  00 1   12266666777776432111 000                                           00


Q ss_pred             hc-CCCCcEEeeCCCCCceeeCC-CCCEEEEeccccccc
Q psy6542         142 LT-LSVPCLHFRDLKPANILLDE-HGHVRISDLGLACDF  178 (334)
Q Consensus       142 ~~-~~~~~iiHrDlKp~NiLl~~-~~~vkl~DFGla~~~  178 (334)
                      .. ....++.|.|+-+.|||+++ ++.++++||..|..-
T Consensus       176 ~~~~~~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~n  214 (330)
T PLN02421        176 DSLKAPVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSYS  214 (330)
T ss_pred             ccCCCCeEEEECCCCcccEEEeCCCCcEEEEcccccCCC
Confidence            01 12235679999999999975 478999999998643

>KOG0576|consensus

Probab=97.13  E-value=0.00039  Score=68.74  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=99.2

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCC-cccccccceeeEEEEeecCCeEEEEEEccCCC-
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEP-FKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-   94 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~-i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-   94 (334)
                      ++++.+...+...+ .+.+...     ..  ..-++++|.+++||| .        +..++-++...+.+|+|+|+.++ 
T Consensus       257 knpKkRptaeklL~-h~fvs~~-----l~--~rl~~eLLdK~n~P~~~--------v~~~~d~~~E~~~~i~~~i~s~~r  320 (829)
T KOG0576|consen  257 KNPKKRPTAEKLLQ-HPFVSQT-----LS--RRLAIELLDKVNNPNPV--------VRYLEDYDGEDYLWIPMRICSTGR  320 (829)
T ss_pred             CCCccCCChhhhee-ceeeccc-----hh--hHHHHHHHHHccCCCCc--------ccccccCCcccccchhhhhhcCCc
Confidence            55555544444443 4444432     11  223889999999999 6        78888888888999999999988 


Q ss_pred             hhHHhhhhhhhhhHHH--HHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEec
Q psy6542          95 KDQISRSKINRYHKKL--RKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDL  172 (334)
Q Consensus        95 l~~l~~~~~~~~~~~~--~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DF  172 (334)
                      .-....    ...+..  .-.+..++..-+.+|+|+|+-.                =+|||    ||+..+ +.++..||
T Consensus       321 s~~~~~----~~se~~~~~~~~~~~~r~et~~l~~l~~~~----------------~~~~d----~~l~s~-~~~~~~~~  375 (829)
T KOG0576|consen  321 SSALEM----TVSEIALEQYQFAYPLRKETRPLAELHSSY----------------KVHRD----NILGSE-EEVKLLDF  375 (829)
T ss_pred             cccccC----ChhhHhhhhhhhhhhhhhhccccccccccc----------------ccCcc----cccccc-cccccccc
Confidence            211101    111111  1122334456788999999875                58998    777655 77999999


Q ss_pred             ccccccCCCC-CCccccCcccccccccccc--CCcceeeh
Q psy6542         173 GLACDFSKKK-PHASVESDCILHGYIKKLG--GPFVSAWQ  209 (334)
Q Consensus       173 Gla~~~~~~~-~~~~~~t~~~~~~~v~~~~--~~~~~~w~  209 (334)
                      +.+..+.... ..+..+++..++|++....  ....+.|+
T Consensus       376 ~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~~~~~p~~~~  415 (829)
T KOG0576|consen  376 AVPPQLTRTMKPRTAIGTPEPLAPEVIQENTIDGCPDSGS  415 (829)
T ss_pred             cCCcccCcccccccCCCCCCCCCchhhcccccccCCCccC
Confidence            9998877664 4556789999999974322  22444555

>PRK10593 hypothetical protein; Provisional

Probab=96.94  E-value=0.025  Score=52.07  Aligned_cols=68  Identities=13%  Similarity=0.002  Sum_probs=43.6

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCC---CcccccccceeeEEEEeec---CCeEEE
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNE---PFKKCVLLFKMNLYKVTSE---PNSHYI   86 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~---~i~~~~~~~~v~~~~~~~~---~~~~~i   86 (334)
                      +....||...... | .+.+|..+...    ....+.+|.+.++.|...   .+        .+.++++..   .+.-+|
T Consensus        25 G~~~~vy~~~~~~-~-~~~~k~~~~~~----~~~~~~~Ea~~L~~L~~~~~vpV--------P~V~~~~~~~~~~g~~~L   90 (297)
T PRK10593         25 QPYAALWALYDSQ-G-NPMPLMARSFS----TPGVAQQEAWKLSMLARSGTVRM--------PTVYGVMTHEQSPGPDVL   90 (297)
T ss_pred             ccceeEEEEEcCC-C-CEEEEEecccc----cchHHHHHHHHHHHHccCCCCCc--------CcEEEEeccCCcCCCeEE
Confidence            3344666654322 3 56777744211    123567799999988642   45        788877653   466899


Q ss_pred             EEEccCCC
Q psy6542          87 IGVRQSGP   94 (334)
Q Consensus        87 vmEy~~g~   94 (334)
                      |||+++|.
T Consensus        91 VmE~i~G~   98 (297)
T PRK10593         91 LLERLRGV   98 (297)
T ss_pred             EEeccCCE
Confidence            99999986

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=96.72  E-value=0.01  Score=54.35  Aligned_cols=60  Identities=5%  Similarity=-0.177  Sum_probs=35.4

Q ss_pred             CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC
Q psy6542          25 PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP   94 (334)
Q Consensus        25 ~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~   94 (334)
                      .+++.+.||+-..     .....+..|.+-|+.|...+-     ..+.+.+.+....+.-|+||||++.+
T Consensus        38 ~~~~~~FvK~~~~-----~~~~~f~~Ea~gL~~L~~~~~-----~~vP~vi~~G~~~~~~fLlle~l~~~   97 (288)
T PF03881_consen   38 TDGGSYFVKVNSE-----SGRDMFEGEAEGLKALAEANP-----IRVPKVIAWGEYDDDAFLLLEFLEMG   97 (288)
T ss_dssp             TTS-EEEEEEEEG-----GGCCHHHHHHHHHHHHCHTTT-----SBS--EEEEEE-SSCCEEEEE-----
T ss_pred             CCCccEEEEecCh-----hhHHHHHHHHHHHHHHHhcCC-----CCCCeEEEEEeecCCceEEEEeecCC
Confidence            6678899998772     123466779998888843221     01278888888777779999998766

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=96.68  E-value=0.015  Score=49.04  Aligned_cols=119  Identities=17%  Similarity=0.110  Sum_probs=72.9

Q ss_pred             eEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC-
Q psy6542          16 WRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-   94 (334)
Q Consensus        16 ~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-   94 (334)
                      -.||++.-.  |..+|+|+-+.++.    ...+..|++++..+...++       -.++|.+..    .++.|||++|- 
T Consensus        36 s~Vyl~~~~--~~~~a~Kvrr~ds~----r~~l~kEakiLeil~g~~~-------~p~vy~yg~----~~i~me~i~G~~   98 (201)
T COG2112          36 SVVYLGEWR--GGEVALKVRRRDSP----RRNLEKEAKILEILAGEGV-------TPEVYFYGE----DFIRMEYIDGRP   98 (201)
T ss_pred             cEEEEeecc--CceEEEEEecCCcc----hhhHHHHHHHHHHhhhcCC-------CceEEEech----hhhhhhhhcCcc
Confidence            367776543  56899998885543    4456779999999998876       245665543    34559999996 


Q ss_pred             hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCC-CCceeeCCCCCEEEEecc
Q psy6542          95 KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK-PANILLDEHGHVRISDLG  173 (334)
Q Consensus        95 l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlK-p~NiLl~~~~~vkl~DFG  173 (334)
                      +.......       ..+.+.    .++..---|-..|                |-|..|. |...++.+++.+-|+||-
T Consensus        99 L~~~~~~~-------~rk~l~----~vlE~a~~LD~~G----------------I~H~El~~~~k~vlv~~~~~~iIDFd  151 (201)
T COG2112          99 LGKLEIGG-------DRKHLL----RVLEKAYKLDRLG----------------IEHGELSRPWKNVLVNDRDVYIIDFD  151 (201)
T ss_pred             hhhhhhcc-------cHHHHH----HHHHHHHHHHHhc----------------cchhhhcCCceeEEecCCcEEEEEcc
Confidence            43221110       112222    3333333344455                7676664 444444455589999999


Q ss_pred             ccccc
Q psy6542         174 LACDF  178 (334)
Q Consensus       174 la~~~  178 (334)
                      .|+.-
T Consensus       152 ~At~k  156 (201)
T COG2112         152 SATFK  156 (201)
T ss_pred             chhhc
Confidence            99733

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=96.64  E-value=0.019  Score=52.48  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=26.5

Q ss_pred             CcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         147 PCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      ..++|+|+.|.|+|+++++.+.|+||+.|.
T Consensus       175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         175 RGVIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             CcCCccCcCcccEEEeCCceEEEeehhhhc
Confidence            348999999999999998777999999875

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=96.59  E-value=0.0016  Score=66.79  Aligned_cols=74  Identities=9%  Similarity=-0.005  Sum_probs=48.9

Q ss_pred             eeCCCCC-ceeeCCCCCEEEEecccccccCCCC----CCccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCC
Q psy6542         151 FRDLKPA-NILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRL  220 (334)
Q Consensus       151 HrDlKp~-NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~  220 (334)
                      +++.+|. |++++..+.+++.|||.++......    .....||+.|++||+. ...+. .+|+|+   ++|+++. +.+
T Consensus       500 ~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~APE~l~~~~~~~~~DiwSlG~il~Ellt-G~~  578 (669)
T cd05610         500 TQKPRPHGNLYQTPKQVKIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLT-GIP  578 (669)
T ss_pred             CCCCCCCCceeECCccccccccCCCchhhhcccccccCCceeeCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHH-CCC
Confidence            4566666 6666767777899999988654332    2345789999999974 33344 455555   6666655 566


Q ss_pred             CCCCC
Q psy6542         221 ELHPE  225 (334)
Q Consensus       221 ~~~~~  225 (334)
                      ||.+.
T Consensus       579 pf~~~  583 (669)
T cd05610         579 PFNDE  583 (669)
T ss_pred             CCCCC
Confidence            77554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=96.54  E-value=0.12  Score=49.49  Aligned_cols=72  Identities=10%  Similarity=-0.116  Sum_probs=45.5

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCc---c--hHHhhhHHHHHHHHHhcC---CCCcccccccceeeEEEEeecCCeE
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPH---E--SRVAKWRPYIQEIFNHLR---NEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~--~~~~~~~~~E~~il~~l~---h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      +..--||.+.....++.|.||.-.....   +  .....+...|.+.|+.+.   ..++        .+++.+.  .+..
T Consensus        37 Gn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~V--------PkV~~~D--~~~~  106 (401)
T PRK09550         37 GNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLV--------PKVYHYD--EELA  106 (401)
T ss_pred             CceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCC--------CeEEEEC--CCCC
Confidence            3344778888765446899998542211   1  112345667888888763   2345        7777663  3557


Q ss_pred             EEEEEccCCC
Q psy6542          85 YIIGVRQSGP   94 (334)
Q Consensus        85 ~ivmEy~~g~   94 (334)
                      ++||||+++.
T Consensus       107 ~lVME~L~~~  116 (401)
T PRK09550        107 VTVMEDLSDH  116 (401)
T ss_pred             EEEEecCCCc
Confidence            8999999875

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=96.44  E-value=0.011  Score=51.40  Aligned_cols=29  Identities=34%  Similarity=0.659  Sum_probs=20.5

Q ss_pred             cEEeeCCCCCceee-CCCCCEEEEeccccc
Q psy6542         148 CLHFRDLKPANILL-DEHGHVRISDLGLAC  176 (334)
Q Consensus       148 ~iiHrDlKp~NiLl-~~~~~vkl~DFGla~  176 (334)
                      ++.|.|+.|.|||+ +.++.++++||-.|.
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~  173 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAG  173 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-E
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHh
Confidence            46799999999999 888999999999875

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=96.09  E-value=0.017  Score=54.14  Aligned_cols=74  Identities=19%  Similarity=0.196  Sum_probs=49.5

Q ss_pred             cCCeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          80 EPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        80 ~~~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                      ++.+.|++|++-.+.+..+...+        .+....++.+.+.-+.-+..+-               ++-|||+...||
T Consensus       297 e~~y~yl~~kdhgt~is~ik~~~--------~~e~lsff~s~~sil~~lekkf---------------~fehrnlt~~ni  353 (488)
T COG5072         297 ETLYLYLHFKDHGTPISIIKADR--------SEEELSFFWSCISILDILEKKF---------------PFEHRNLTLDNI  353 (488)
T ss_pred             CceEEEEEEecCCceeeeeeccc--------HHHHHHHHHHHHHHHhhhhhcC---------------Ccccccccccce
Confidence            44567889998877754332221        1222333335555444444433               378999999999


Q ss_pred             eeCCCCCEEEEecccccc
Q psy6542         160 LLDEHGHVRISDLGLACD  177 (334)
Q Consensus       160 Ll~~~~~vkl~DFGla~~  177 (334)
                      ||+ +|.|.|+||-++|.
T Consensus       354 LId-~GnvtLIDfklsRl  370 (488)
T COG5072         354 LID-EGNVTLIDFKLSRL  370 (488)
T ss_pred             eee-cCceEEEEeeeeec
Confidence            999 89999999999993

>KOG2137|consensus

Probab=95.77  E-value=0.0092  Score=59.66  Aligned_cols=132  Identities=8%  Similarity=0.124  Sum_probs=74.3

Q ss_pred             HHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCC-----------CCcccc
Q psy6542         120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKK-----------PHASVE  188 (334)
Q Consensus       120 qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~-----------~~~~~~  188 (334)
                      +++.||.|+|..-+               +||++|.|++|.++..|..||+.|+++.......           +....-
T Consensus       107 ~v~dgl~flh~sAk---------------~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~  171 (700)
T KOG2137|consen  107 NVADGLAFLHRSAK---------------VVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQP  171 (700)
T ss_pred             cccchhhhhccCcc---------------eeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhcc
Confidence            67799999997542               9999999999999999999999999987554421           111112


Q ss_pred             Cccccccccc-c-ccCCcceeeh--hHHHHHc-CCCCCCCCCCC--CCcccchhcc-cccccccccccHhHHHHHHHhhc
Q psy6542         189 SDCILHGYIK-K-LGGPFVSAWQ--TRYAKLF-PNRLELHPESG--QSKPELIFMD-QIEEVSQDLITVKGEQCVQLKLT  260 (334)
Q Consensus       189 t~~~~~~~v~-~-~~~~~~~~w~--~~~~~l~-~~~~~~~~~~~--~~~~~~i~~~-~~~~~~~~~~~~~~~~~i~~~~~  260 (334)
                      ...|.+||.. . ...+.+|..+  ++.+.++ ++..-+.+.+.  .+..+....+ ..... ..-.+.....|+...+.
T Consensus       172 ~~~f~apE~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~~~~~~~~-s~~~p~el~~~l~k~l~  250 (700)
T KOG2137|consen  172 HLNFLAPEYLLGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNLLNAGAFGY-SNNLPSELRESLKKLLN  250 (700)
T ss_pred             CcccccchhhccccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhcccccccccc-cccCcHHHHHHHHHHhc
Confidence            3445556552 2 2244555555  3222223 33322222211  1111111111 11111 12233356788888887


Q ss_pred             cCchhhc
Q psy6542         261 RDTRIVL  267 (334)
Q Consensus       261 ~~p~~r~  267 (334)
                      .+...|.
T Consensus       251 ~~~~~rp  257 (700)
T KOG2137|consen  251 GDSAVRP  257 (700)
T ss_pred             CCcccCc
Confidence            7776666

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=95.39  E-value=0.031  Score=51.90  Aligned_cols=79  Identities=16%  Similarity=0.077  Sum_probs=47.0

Q ss_pred             EEEEEccCCChhHHhhhhhhhhhH-HHHHHHHHHHHHHHHHHHHh---h-cCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          85 YIIGVRQSGPKDQISRSKINRYHK-KLRKCFIRRTVQLLEPVHTC---H-SALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        85 ~ivmEy~~g~l~~l~~~~~~~~~~-~~~~~~~~i~~qi~~~L~yL---H-~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                      .||+.+..+.-|.+.......+.- ...+.+..++.|++.-.--+   - ..+                ++|-||||+||
T Consensus       247 IIIfPLA~~Sadkv~~~~~~e~GF~s~~~YvkfifLQiaLLyikIYelp~c~n----------------F~H~DLKPdNI  310 (434)
T PF05445_consen  247 IIIFPLARCSADKVTESNAAELGFKSNVEYVKFIFLQIALLYIKIYELPCCTN----------------FLHVDLKPDNI  310 (434)
T ss_pred             EEEEehhhcchhhcCHHHHHhcCchhHHHHHHHHHHHHHHHHeeeecCCCcce----------------eeecccCcCcE
Confidence            588888777744443333332211 23444556677886543222   1 223                89999999999


Q ss_pred             eeCCCC------------------CEEEEecccccccC
Q psy6542         160 LLDEHG------------------HVRISDLGLACDFS  179 (334)
Q Consensus       160 Ll~~~~------------------~vkl~DFGla~~~~  179 (334)
                      |+-++.                  .++|.||.+++..+
T Consensus       311 LiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~~  348 (434)
T PF05445_consen  311 LIFDSKEPIRIKFGNRNYVFKEPIRCCLNDFDFSQVAN  348 (434)
T ss_pred             EEecCCCceEEEECCeEEEecccceeeecccCHHHhcc
Confidence            994332                  15677888877443

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>KOG2268|consensus

Probab=95.26  E-value=0.021  Score=52.83  Aligned_cols=126  Identities=12%  Similarity=0.074  Sum_probs=77.6

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCc------------------chH--HhhhHHHHHHHHHhcCCCC--cccccccceeeE
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPH------------------ESR--VAKWRPYIQEIFNHLRNEP--FKKCVLLFKMNL   74 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~------------------~~~--~~~~~~~E~~il~~l~h~~--i~~~~~~~~v~~   74 (334)
                      -||++-+.+ |++.++|+=+..+.                  ..-  .+-...+|+..|+.|....  +        .+-
T Consensus       107 DIY~v~d~~-G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~gfpV--------Pkp  177 (465)
T KOG2268|consen  107 DIYVVADEE-GNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERGFPV--------PKP  177 (465)
T ss_pred             ceEEEecCC-CCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcCCCC--------CCc
Confidence            477777665 78888887554321                  000  0113456888888886432  3        333


Q ss_pred             EEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeC
Q psy6542          75 YKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRD  153 (334)
Q Consensus        75 ~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrD  153 (334)
                      +    +.++.++|||++.|- +-.+..-.       .+..+..   .+..-+--|-.+|                +||+|
T Consensus       178 i----D~~RH~Vvmelv~g~Pl~~v~~v~-------d~~~ly~---~lm~~Iv~la~~G----------------lIHgD  227 (465)
T KOG2268|consen  178 I----DHNRHCVVMELVDGYPLRQVRHVE-------DPPTLYD---DLMGLIVRLANHG----------------LIHGD  227 (465)
T ss_pred             c----cccceeeHHHhhcccceeeeeecC-------ChHHHHH---HHHHHHHHHHHcC----------------ceecc
Confidence            3    456889999999987 32221111       1111111   2223334456678                99999


Q ss_pred             CCCCceeeCCCCCEEEEecccccccCCC
Q psy6542         154 LKPANILLDEHGHVRISDLGLACDFSKK  181 (334)
Q Consensus       154 lKp~NiLl~~~~~vkl~DFGla~~~~~~  181 (334)
                      .--=||++.+++.++++||==+......
T Consensus       228 FNEFNimv~dd~~i~vIDFPQmvS~sh~  255 (465)
T KOG2268|consen  228 FNEFNIMVKDDDKIVVIDFPQMVSTSHP  255 (465)
T ss_pred             cchheeEEecCCCEEEeechHhhccCCC
Confidence            9999999999999999999866544433

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=95.11  E-value=0.45  Score=41.22  Aligned_cols=118  Identities=15%  Similarity=0.079  Sum_probs=73.9

Q ss_pred             eEEEeceeCCCCCcEEEEEeeCCC---c----------ch------HHhhhHHHHHHHHHhcCCCCcccccccceeeEEE
Q psy6542          16 WRVKPPSLKPLGFPIQIGMLRHRP---H----------ES------RVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYK   76 (334)
Q Consensus        16 ~~V~~a~~~~~~~~vAIK~l~~~~---~----------~~------~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~   76 (334)
                      ..|+++..  .|+.+|+|+.+.-.   .          +.      .....|..|.+.+.+|+..+- ..+  ..|+.|+
T Consensus        52 ~~V~kv~I--~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~~-e~~--~Avkc~G  126 (207)
T PF13095_consen   52 GYVFKVEI--DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAGR-EGL--WAVKCHG  126 (207)
T ss_pred             eEEEEEEE--CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhccc-cCc--eEEEeeE
Confidence            45555543  46799999933210   0          10      223367789998888765432 000  1366666


Q ss_pred             Eee-c----------------C-CeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q psy6542          77 VTS-E----------------P-NSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLI  138 (334)
Q Consensus        77 ~~~-~----------------~-~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~  138 (334)
                      +.. +                . -...||.||+....    .     +   ....    +.+|++-+..+|..|      
T Consensus       127 yl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~----~-----~---~~~~----~~~~~~dl~~~~k~g------  184 (207)
T PF13095_consen  127 YLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP----P-----L---QIRD----IPQMLRDLKILHKLG------  184 (207)
T ss_pred             EEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc----c-----c---chhH----HHHHHHHHHHHHHCC------
Confidence            653 1                0 12468889887774    0     0   1111    227888899999999      


Q ss_pred             hhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccc
Q psy6542         139 AIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLA  175 (334)
Q Consensus       139 ~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla  175 (334)
                                |+-+|+|+.|..     .=+|+|||.+
T Consensus       185 ----------I~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  185 ----------IVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             ----------eeeccCcccccc-----CCEEEecccC
Confidence                      999999999997     3479999965

>PRK11768 serine/threonine protein kinase; Provisional

Probab=95.09  E-value=0.23  Score=46.31  Aligned_cols=27  Identities=30%  Similarity=0.234  Sum_probs=23.2

Q ss_pred             cEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         148 CLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       148 ~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      .++|+|+-+.|||++ + .+.|+||+.|.
T Consensus       197 ~liHgD~h~~NvL~~-d-~~~iIDFDd~~  223 (325)
T PRK11768        197 LRLHGDCHPGNILWR-D-GPHFVDLDDAR  223 (325)
T ss_pred             cceecCCCchhcccc-C-CcEEEeCCCCC
Confidence            479999999999995 3 57899999875

>PLN02756 S-methyl-5-thioribose kinase

Probab=94.58  E-value=0.43  Score=45.91  Aligned_cols=30  Identities=17%  Similarity=0.314  Sum_probs=25.2

Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      .|..+|+|+.|.||+++.++ .+++|.-+|-
T Consensus       229 ~~~L~HGDl~~g~i~~~~~~-~~~id~ef~~  258 (418)
T PLN02756        229 AQALVHGDLHTGSVMVTPDS-TQVIDPEFAF  258 (418)
T ss_pred             ccceeecCCCCCcEEEcCCC-ceEecchhhc
Confidence            47799999999999999876 8888876653

>PTZ00296 choline kinase; Provisional

Probab=94.52  E-value=0.54  Score=45.86  Aligned_cols=31  Identities=19%  Similarity=0.234  Sum_probs=25.2

Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEecccccc
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLACD  177 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~  177 (334)
                      ..++.|.|+-+.|||.+.++ +.++||-.|..
T Consensus       283 ~~VfCHNDl~~~NiL~~~~~-l~LIDfEYAg~  313 (442)
T PTZ00296        283 DIVFCHNDLQENNIINTNKC-LRLIDFEYSGY  313 (442)
T ss_pred             CeeEEeCCCCccceeecCCC-EEEEeeccccc
Confidence            34567999999999876544 99999998863

>KOG2270|consensus

Probab=94.48  E-value=0.52  Score=44.58  Aligned_cols=136  Identities=14%  Similarity=0.170  Sum_probs=78.4

Q ss_pred             CceEEEeceeCCCCCcEEEEEeeCCCc------------------------chHHhhhHHHHHHHHHhcCCCCccccccc
Q psy6542          14 SKWRVKPPSLKPLGFPIQIGMLRHRPH------------------------ESRVAKWRPYIQEIFNHLRNEPFKKCVLL   69 (334)
Q Consensus        14 ~~~~V~~a~~~~~~~~vAIK~l~~~~~------------------------~~~~~~~~~~E~~il~~l~h~~i~~~~~~   69 (334)
                      .--.||.|.... |..+|||+.+..-.                        ..-++-+...|++-|++|+...| -|--+
T Consensus       156 KEANVYHat~~d-G~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~aGI-P~PeP  233 (520)
T KOG2270|consen  156 KEANVYHATEED-GSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNAGI-PCPEP  233 (520)
T ss_pred             ccceeEeeecCC-CceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhcCC-CCCCc
Confidence            345799987665 78899999864210                        11223355668888888877665 11111


Q ss_pred             ceeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHh-hcCCCCCchhhhhhcCCC
Q psy6542          70 FKMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKK-LRKCFIRRTVQLLEPVHTC-HSALNKNPLIAIFLTLSV  146 (334)
Q Consensus        70 ~~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~-~~~~~~~i~~qi~~~L~yL-H~~~~~~~~~~~~~~~~~  146 (334)
                      ..+         ....+||+|+..+ ...-.... ..++.. ....+.    |++.-+.-| |..+              
T Consensus       234 IlL---------k~hVLVM~FlGrdgw~aPkLKd-~~ls~~ka~~~Y~----~~v~~MR~lY~~c~--------------  285 (520)
T KOG2270|consen  234 ILL---------KNHVLVMEFLGRDGWAAPKLKD-ASLSTSKARELYQ----QCVRIMRRLYQKCR--------------  285 (520)
T ss_pred             eee---------ecceEeeeeccCCCCcCccccc-ccCChHHHHHHHH----HHHHHHHHHHHHhc--------------
Confidence            001         2347899999865 11100111 122211 222232    344434433 3445              


Q ss_pred             CcEEeeCCCCCceeeCCCCCEEEEecccccccCCCC
Q psy6542         147 PCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKK  182 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~  182 (334)
                        +||.||.-=|+|+.+ |.+.++|-+=+.....+.
T Consensus       286 --LVHADLSEfN~Lyhd-G~lyiIDVSQSVE~DHP~  318 (520)
T KOG2270|consen  286 --LVHADLSEFNLLYHD-GKLYIIDVSQSVEHDHPH  318 (520)
T ss_pred             --eeccchhhhhheEEC-CEEEEEEccccccCCChh
Confidence              999999999999865 789999998776554443

>PRK06148 hypothetical protein; Provisional

Probab=94.44  E-value=1.2  Score=48.13  Aligned_cols=29  Identities=28%  Similarity=0.381  Sum_probs=25.1

Q ss_pred             cEEeeCCCCCceeeCCCC--CE-EEEeccccc
Q psy6542         148 CLHFRDLKPANILLDEHG--HV-RISDLGLAC  176 (334)
Q Consensus       148 ~iiHrDlKp~NiLl~~~~--~v-kl~DFGla~  176 (334)
                      .+||.|+.+.|||++.++  .+ -|+|||.+.
T Consensus       204 ~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~  235 (1013)
T PRK06148        204 QVIHNDANDYNILVDADDGERISGLIDFGDAV  235 (1013)
T ss_pred             ceECCCCCcccEEEcCCCCcceEEEEECcccc
Confidence            489999999999999875  45 599999886

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.12  E-value=0.8  Score=40.55  Aligned_cols=72  Identities=10%  Similarity=-0.036  Sum_probs=47.4

Q ss_pred             CCceEEEeceeCCCC-CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          13 VSKWRVKPPSLKPLG-FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~-~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      ++-+-|.-|+...+| .++-+|.-.     ......|..|+.-|..|.-.|-     ..+.+.+.+..+.+..|+||||+
T Consensus        24 v~gG~inea~~v~dg~~~~FvK~n~-----~~~~~~f~AEa~gL~~la~s~t-----i~VP~vi~~G~~~~~sylVle~L   93 (286)
T COG3001          24 VSGGDINEAWRLRDGTDPFFVKCNQ-----REQLSMFTAEADGLELLARSNT-----ITVPKVIAVGASRDHSYLVLEYL   93 (286)
T ss_pred             cCCccccceeEeecCCcceEEEecc-----hhhHHHHHHHHHHHHHHHhcCC-----ccccceEEecCCCCeeEEEEeec
Confidence            344556666655444 457777544     2234566778887777765552     01278888888999999999998


Q ss_pred             CCC
Q psy6542          92 SGP   94 (334)
Q Consensus        92 ~g~   94 (334)
                      +-+
T Consensus        94 ~~~   96 (286)
T COG3001          94 PTG   96 (286)
T ss_pred             cCC
Confidence            775

>PRK05231 homoserine kinase; Provisional

Probab=93.99  E-value=0.034  Score=51.46  Aligned_cols=29  Identities=24%  Similarity=0.337  Sum_probs=25.4

Q ss_pred             cEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         148 CLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       148 ~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      .++|+|+.|.||+++.+....|+||+.|.
T Consensus       188 ~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        188 GVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             ccCCCCCCCCcEEEECCceEEEEeccccc
Confidence            49999999999999876556899999875

>PTZ00384 choline kinase; Provisional

Probab=93.98  E-value=0.42  Score=45.69  Aligned_cols=30  Identities=23%  Similarity=0.078  Sum_probs=24.6

Q ss_pred             CcEEeeCCCCCceeeCCCCCEEEEecccccc
Q psy6542         147 PCLHFRDLKPANILLDEHGHVRISDLGLACD  177 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~  177 (334)
                      ..+.|.|+-+.|||.++ +.+.++||-.|..
T Consensus       227 ~VfCHNDL~~gNIL~~~-~~l~lID~EYA~~  256 (383)
T PTZ00384        227 VLFCHNDLFFTNILDFN-QGIYFIDFDFAGF  256 (383)
T ss_pred             eeeeeccCCcccEEecC-CCEEEEEeccccC
Confidence            34679999999999765 4599999998863

>PRK10271 thiK thiamine kinase; Provisional

Probab=93.97  E-value=0.046  Score=46.69  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=25.5

Q ss_pred             cEEeeCCCCCceeeCCCCCEEEEecccccc
Q psy6542         148 CLHFRDLKPANILLDEHGHVRISDLGLACD  177 (334)
Q Consensus       148 ~iiHrDlKp~NiLl~~~~~vkl~DFGla~~  177 (334)
                      ..+|+|+.|.|++++++| ++|+||+.|..
T Consensus        78 ~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             eeecCCCCCccEEEECCC-EEEEeCCcccC
Confidence            478999999999998877 99999998853

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=93.83  E-value=0.055  Score=49.32  Aligned_cols=35  Identities=29%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             CCCCcEEeeCCCCCceeeCCCCC-EEEEeccccccc
Q psy6542         144 LSVPCLHFRDLKPANILLDEHGH-VRISDLGLACDF  178 (334)
Q Consensus       144 ~~~~~iiHrDlKp~NiLl~~~~~-vkl~DFGla~~~  178 (334)
                      ...|.++|+|+.|.||++++++. ..|+||+.+..-
T Consensus       182 ~~~~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iG  217 (276)
T cd05152         182 PRHTVLVHGDLHPGHILIDEDARVTGLIDWTEAKVG  217 (276)
T ss_pred             CCCCeeEeCCCCCCcEEEeCCCCEEEEECcHhcccC
Confidence            55678999999999999997565 579999988643

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=93.70  E-value=0.071  Score=49.18  Aligned_cols=29  Identities=31%  Similarity=0.488  Sum_probs=26.1

Q ss_pred             cEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         148 CLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       148 ~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      .++|+|+.+.|++++.++.+.|+||+.+.
T Consensus       188 ~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       188 GVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             ccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            49999999999999988877899999874

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>KOG1826|consensus

Probab=93.62  E-value=0.013  Score=63.81  Aligned_cols=146  Identities=11%  Similarity=-0.089  Sum_probs=92.7

Q ss_pred             HhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee--cCCeEEEEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHH
Q psy6542          44 VAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS--EPNSHYIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTV  119 (334)
Q Consensus        44 ~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~--~~~~~~ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~  119 (334)
                      .++....|..-.+...|+++        ...+.-..  +....|+.|+|+.+|  .+.+ .....+.+......+.....
T Consensus      1272 lkemll~e~de~~~~~h~~~--------~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iI-ikg~ee~~~ld~~~v~~~~k 1342 (2724)
T KOG1826|consen 1272 LKEMLLSERDELREAKHYLT--------EVDPLRIPPSESTEEYIRSLYVEFGKLFSII-IKGLEESPDLDRSPVHLRHK 1342 (2724)
T ss_pred             HHHhhhhhhhhhhhhhceee--------ecccccCCCCCChHHHHHHHHHHHhHHHHHH-HhccccCCcchhchHHHHHH
Confidence            44445556666777899998        66665544  345679999999999  3444 33344444444443332223


Q ss_pred             HHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCC--CccccCcccccccc
Q psy6542         120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP--HASVESDCILHGYI  197 (334)
Q Consensus       120 qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~--~~~~~t~~~~~~~v  197 (334)
                      +.+.+..-+|...+.|.           ..+|++||+-|.+|..+-.||+.++|+.+.......  ....++++|+.+.+
T Consensus      1343 vsvl~~~~~ls~tnlg~-----------T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli 1411 (2724)
T KOG1826|consen 1343 VSVLNRNVILSLTNLGN-----------TNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLI 1411 (2724)
T ss_pred             HHHhccchhhhcccCCc-----------cchhhhhhhhccceecCCcccccccccccccCchHhhhhhhhCCHHHHHHHH
Confidence            44777888777654443           278999999999999999999999999984443332  22334555666665


Q ss_pred             c-cccCCc-ceeeh
Q psy6542         198 K-KLGGPF-VSAWQ  209 (334)
Q Consensus       198 ~-~~~~~~-~~~w~  209 (334)
                      . ...++. +|.|.
T Consensus      1412 ~N~ik~t~rsdilr 1425 (2724)
T KOG1826|consen 1412 KNEIKFTKRSDILR 1425 (2724)
T ss_pred             HHHHhhhhHHHHHH
Confidence            3 233555 44444

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=93.38  E-value=0.22  Score=45.76  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=25.3

Q ss_pred             CcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         147 PCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      +.++|+|+.+.||+++. +.+.|+||+.+.
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            34899999999999988 678999999764

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=92.19  E-value=0.13  Score=44.18  Aligned_cols=30  Identities=27%  Similarity=0.368  Sum_probs=25.5

Q ss_pred             CcEEeeCCCCCceeeCCCC-----CEEEEeccccc
Q psy6542         147 PCLHFRDLKPANILLDEHG-----HVRISDLGLAC  176 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~~~-----~vkl~DFGla~  176 (334)
                      +.++|+|+.+.||++..++     .+.++||..++
T Consensus       120 ~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~  154 (196)
T smart00587      120 NVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSH  154 (196)
T ss_pred             eEEeeCCCCccceeeccCCCCCccceEEEecccCC
Confidence            4589999999999998653     58999999875

subfamily of choline kinases

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=92.10  E-value=0.77  Score=40.48  Aligned_cols=86  Identities=16%  Similarity=0.103  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6542          47 WRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVH  126 (334)
Q Consensus        47 ~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~  126 (334)
                      .+..+.+++.++..  |        +++..-  .+..+-++.|+|-.-...            .    ..++..-+.+|.
T Consensus       104 ~y~nky~v~ArmhG--i--------lrL~ND--n~~~yGvIlE~Cy~~~i~------------~----~N~i~agi~~L~  155 (308)
T PF07387_consen  104 LYFNKYRVFARMHG--I--------LRLKND--NNYKYGVILERCYKIKIN------------F----SNFITAGIKDLM  155 (308)
T ss_pred             hhhhhhhHHHHhhh--e--------eEeecC--CCceeEEEEeeccCcccc------------h----hHHHHHhHHHHH
Confidence            34667888877653  4        666522  444578999988665210            0    111112256777


Q ss_pred             HhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccc
Q psy6542         127 TCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL  174 (334)
Q Consensus       127 yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGl  174 (334)
                      -.|+..              +..+|+|.-|+||+-|+.|.+||.|=+.
T Consensus       156 ~fH~~~--------------~~~lHGD~np~NiM~D~~G~lKlVDP~~  189 (308)
T PF07387_consen  156 DFHSEN--------------QHCLHGDCNPDNIMCDKFGYLKLVDPVC  189 (308)
T ss_pred             HhhccC--------------CCeecCCCChhheeecCCCCEEecChhh
Confidence            888543              2299999999999999999999999774

The function of this family is unknown.

>PHA03111 Ser/Thr kinase; Provisional

Probab=91.80  E-value=0.55  Score=43.73  Aligned_cols=68  Identities=18%  Similarity=0.126  Sum_probs=38.4

Q ss_pred             EEEEEEccCCChhHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          84 HYIIGVRQSGPKDQISRSKIN--RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        84 ~~ivmEy~~g~l~~l~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      -.||+.+..+.-+.+......  ++.. ..+.+..++.|++.-.-++-+..            +--.++|-||||+|||+
T Consensus       250 nIIIfPLArcSadkv~~~~~~e~GF~s-~~~YikfifLQiaLLyikIYelp------------~c~nF~H~DLKPdNILi  316 (444)
T PHA03111        250 NIIIFPLARCSADKVTEENAAELGFKS-LVEYIKFIFLQIALLYIKIYELP------------CCDNFLHVDLKPDNILI  316 (444)
T ss_pred             cEEEEehhhcccccCCHHHHHHcCCcc-HHHHHHHHHHHHHHHHHhhhcCC------------CcceeeeccCCCCcEEE
Confidence            468888877664333332222  2222 34445566778876553442211            00118999999999999


Q ss_pred             CCC
Q psy6542         162 DEH  164 (334)
Q Consensus       162 ~~~  164 (334)
                      -++
T Consensus       317 Fds  319 (444)
T PHA03111        317 FDS  319 (444)
T ss_pred             ecC
Confidence            443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	334
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		2e-16
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		6e-13
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		3e-16
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		6e-13
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		3e-16
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		4e-13
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		3e-16
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		4e-13
1bak_A	119	Signal Transduction Pleckstrin Homology Domain Of G		8e-13
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		6e-07
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		6e-07
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		4e-05
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		4e-05
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		4e-05
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		5e-05
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		7e-05
3g51_A	325	Structural Diversity Of The Active Conformation Of		8e-05
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		8e-05
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		8e-05
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		1e-04
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		1e-04
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		1e-04
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		1e-04
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		1e-04
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		1e-04
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		2e-04
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		2e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		2e-04
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		2e-04
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		2e-04
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		2e-04
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		2e-04
4ae9_A	343	Structure And Function Of The Human Sperm-specific		2e-04
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		2e-04
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		2e-04
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		2e-04
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		2e-04
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		2e-04
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		2e-04
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		2e-04
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		2e-04
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		2e-04
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		2e-04
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		2e-04
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		2e-04
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		2e-04
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		2e-04
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		2e-04
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		2e-04
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		2e-04
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		2e-04
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		2e-04
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		2e-04
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		2e-04
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		2e-04
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-04
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-04
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		2e-04
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		2e-04
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		2e-04
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		2e-04
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		2e-04
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		2e-04
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		2e-04
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		3e-04
4ae6_A	343	Structure And Function Of The Human Sperm-specific		3e-04
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		3e-04
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		3e-04
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		3e-04
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		3e-04
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		3e-04
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		4e-04
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		4e-04
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		6e-04
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		6e-04
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		7e-04

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%), Gaps = 4/47 (8%)
Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 314 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 356

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 20/118 (16%)
Query: 190 DCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITV 249
           DCI+HGY+ K+G PF++ WQ RY  LFPNRLE   E G++   L+ M++I+ V +    +
Sbjct: 557 DCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGE-GEAPQSLLTMEEIQSVEE--TQI 613
Query: 250 KGEQCVQLKLTRDTRIVL---TNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELL 304
           K  +C+ LK+    + +L   ++P               L +W   LR A++ +Q+L+
Sbjct: 614 KERKCLLLKIRGGKQFILQCDSDP--------------ELVQWKKELRDAYREAQQLV 657

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%), Gaps = 4/47 (8%)
Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 20/118 (16%)
Query: 190 DCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITV 249
           DCI+HGY+ K+G PF++ WQ RY  LFPNRLE   E G++   L+ M++I+ V +    +
Sbjct: 558 DCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGE-GEAPQSLLTMEEIQSVEE--TQI 614
Query: 250 KGEQCVQLKLTRDTRIVL---TNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELL 304
           K  +C+ LK+    + +L   ++P               L +W   LR A++ +Q+L+
Sbjct: 615 KERKCLLLKIRGGKQFILQCDSDP--------------ELVQWKKELRDAYREAQQLV 658

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%), Gaps = 4/47 (8%)
Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 20/118 (16%)
Query: 190 DCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITV 249
           DCI+HGY+ K+G PF++ WQ RY  LFPNRLE   E G++   L+ M++I+ V +    +
Sbjct: 558 DCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGE-GEAPQSLLTMEEIQSVEE--TQI 614
Query: 250 KGEQCVQLKLTRDTRIVL---TNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELL 304
           K  +C+ LK+    + VL   ++P               L +W   LR A++ +Q+L+
Sbjct: 615 KERKCLLLKIRGGKQFVLQCDSDP--------------ELVQWKKELRDAYREAQQLV 658

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%), Gaps = 4/47 (8%)
Query: 151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV +    HGY+
Sbjct: 315 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYM 357

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 20/118 (16%)
Query: 190 DCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITV 249
           DCI+HGY+ K+G PF++ WQ RY  LFPNRLE   E G++   L+ M++I+ V +    +
Sbjct: 558 DCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGE-GEAPQSLLTMEEIQSVEE--TQI 614
Query: 250 KGEQCVQLKLTRDTRIVL---TNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELL 304
           K  +C+ LK+    + VL   ++P               L +W   LR A++ +Q+L+
Sbjct: 615 KERKCLLLKIRGGKQFVLQCDSDP--------------ELVQWKKELRDAYREAQQLV 658

>pdb|1BAK|A Chain A, Signal Transduction Pleckstrin Homology Domain Of G-Protein Coupled Receptor Kinase 2 (Beta-Adrenergic Receptor Kinase 1), C-Terminal Extended, Nmr, 20 Structures Length = 119

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 14/115 (12%)
Query: 190 DCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITV 249
           DCI+HGY+ K+G PF++ WQ RY  LFPNRLE   E G++   L+ M++I+ V +    +
Sbjct: 7   DCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGE-GEAPQSLLTMEEIQSVEE--TQI 63
Query: 250 KGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELL 304
           K  +C+ LK+    + +L               +  L +W   LR A++ +Q+L+
Sbjct: 64  KERKCLLLKIRGGKQFILQCD-----------SDPELVQWKKELRDAYREAQQLV 107

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 31/46 (67%), Gaps = 9/46 (19%)
Query: 139 AIFLTLSVPC----LH-----FRDLKPANILLDEHGHVRISDLGLA 175
           A+F    + C    LH     +RDLKP NILLD+HGH+RISDLGLA
Sbjct: 288 AVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLA 333

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 31/46 (67%), Gaps = 9/46 (19%)
Query: 139 AIFLTLSVPC----LH-----FRDLKPANILLDEHGHVRISDLGLA 175
           A+F    + C    LH     +RDLKP NILLD+HGH+RISDLGLA
Sbjct: 288 AVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLA 333

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 151 FRDLKPANILLDEHGHVRISDLGLACDF----SKKKPHASV 187
           +RDLKP N+LLD+ G+VRISDLGLA +     +K K +A  
Sbjct: 312 YRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGT 352

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 151 FRDLKPANILLDEHGHVRISDLGLACDF----SKKKPHASV 187
           +RDLKP N+LLD+ G+VRISDLGLA +     +K K +A  
Sbjct: 312 YRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGT 352

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 151 FRDLKPANILLDEHGHVRISDLGLACDF----SKKKPHASV 187
           +RDLKP N+LLD+ G+VRISDLGLA +     +K K +A  
Sbjct: 312 YRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGT 352

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 151 FRDLKPANILLDEHGHVRISDLGLACDF----SKKKPHASV 187
           +RDLKP N+LLD+ G+VRISDLGLA +     +K K +A  
Sbjct: 312 YRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGT 352

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 8/48 (16%)
Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGL---ACDFSKK 181
           L L +  LH     +RDLKP NILLDE GH++++D GL   A D  KK
Sbjct: 139 LALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKK 186

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           L L++  LH     +RDLKP NILLDE GH++++D GL+
Sbjct: 135 LALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 173

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           L L++  LH     +RDLKP NILLDE GH++++D GL+
Sbjct: 136 LALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 174

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           L L++  LH     +RDLKP NILLDE GH++++D GL+
Sbjct: 135 LALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 173

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+DE G+++++D G 
Sbjct: 119 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDEQGYIQVTDFGF 174
Query: 175 A 175
           A
Sbjct: 175 A 175

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 127 LRRIGRFXEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 182
Query: 175 A 175
           A
Sbjct: 183 A 183

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+++D+ G+++++D GL
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGL 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFXEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFXEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFXEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFAEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 153 LRRIGRFXEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 208
Query: 175 A 175
           A
Sbjct: 209 A 209

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 8/49 (16%)
Query: 135 NPLIAIF---LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           NP+   +   + L++  LH     +RDLKP NILLD++GH++I+D G A
Sbjct: 105 NPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFA 153

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 133 LRRIGRFXEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFXEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFXEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 133 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 125 LRRIGRFXEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 180
Query: 175 A 175
           A
Sbjct: 181 A 181

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+++D+ G+++++D GL
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIQVTDFGL 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+++D+ G+++++D G 
Sbjct: 132 LRRIGRFXEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+++D+ G+++++D G 
Sbjct: 133 LRRIGRFXEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 133 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 153 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 208
Query: 175 A 175
           A
Sbjct: 209 A 209

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 152 RDLKPANILLDEHGHVRISDLGLAC 176
           RD+KP NILLDEHGHV I+D  +A 
Sbjct: 139 RDMKPDNILLDEHGHVHITDFNIAA 163

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 133 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 133 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 133 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 153 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 208
Query: 175 A 175
           A
Sbjct: 209 A 209

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 133 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 133 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 125 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 180
Query: 175 A 175
           A
Sbjct: 181 A 181

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+L+D+ G+++++D G 
Sbjct: 118 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 173
Query: 175 A 175
           A
Sbjct: 174 A 174

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+++D+ G+++++D G 
Sbjct: 133 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+++D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+++D+ G+++++D G 
Sbjct: 133 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+++D+ G+++++D G 
Sbjct: 133 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGF 188
Query: 175 A 175
           A
Sbjct: 189 A 189

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+++D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 115 IRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGL 174
           +RR  +  EP    H+      ++  F  L    L +RDLKP N+++D+ G+++++D G 
Sbjct: 132 LRRIGRFSEP----HARFYAAQIVLTFEYLHSLDLIYRDLKPENLIIDQQGYIQVTDFGF 187
Query: 175 A 175
           A
Sbjct: 188 A 188

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDF 178
            +LEPVH  +       LI +   L    L  RD+KP+NILL+   HV+++D GL+  F
Sbjct: 104 NILEPVHKQYVVYQ---LIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSF 159

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 120 QLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLH-----FRDLKPANILLDEHGHVRISDLG 173
            L+  + +CH   L++    A  + L +  LH     +RDLK  NILLD+ GH++I+D G
Sbjct: 105 DLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFG 164
Query: 174 L 174
           +
Sbjct: 165 M 165

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 120 QLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLH-----FRDLKPANILLDEHGHVRISDLG 173
            L+  + +CH   L++    A  + L +  LH     +RDLK  NILLD+ GH++I+D G
Sbjct: 104 DLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFG 163
Query: 174 L 174
           +
Sbjct: 164 M 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	9e-40
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-12
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-11
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-10
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-10
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	9e-09
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-08
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-08
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	5e-08
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	6e-08
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-07
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-07
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-07
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-07
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-07
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-07
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-07
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-07
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-07
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-07
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	2e-07
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-07
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-07
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	3e-07
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	3e-07
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	4e-07
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	4e-07
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	4e-07
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	5e-07
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	6e-07
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	6e-07
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	7e-07
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	7e-07
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	7e-07
3q4u_A	301	Activin receptor type-1; structural genomics conso	8e-07
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	8e-07
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	9e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-06
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	1e-06
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	1e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	1e-06
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-06
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-06
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-06
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-06
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-06
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-06
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-06
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-06
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-06
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-06
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	3e-06
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-06
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-06
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	4e-06
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	4e-06
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	4e-06
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	5e-06
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	6e-06
3rp9_A	458	Mitogen-activated protein kinase; structural genom	6e-06
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	7e-06
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	7e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	8e-06
3soc_A	322	Activin receptor type-2A; structural genomics cons	9e-06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	9e-06
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-05
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	1e-05
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-05
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-05
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-05
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-05
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	2e-05
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-05
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	3e-05
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-05
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-05
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	3e-05
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	3e-05
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-05
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	4e-05
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	4e-05
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	4e-05
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	4e-05
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	4e-05
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	5e-05
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	5e-05
3ork_A	311	Serine/threonine protein kinase; structural genomi	6e-05
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	6e-05
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	7e-05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	7e-05
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	9e-05
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	1e-04
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-04
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	1e-04
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-04
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	2e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-04
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-04
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-04
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	3e-04
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	3e-04
3aln_A	327	Dual specificity mitogen-activated protein kinase;	3e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	3e-04
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-04
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-04
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-04
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	4e-04
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	4e-04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	4e-04
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	4e-04
2dyl_A	318	Dual specificity mitogen-activated protein kinase	4e-04
3bhy_A	283	Death-associated protein kinase 3; death associate	5e-04
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	5e-04
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	6e-04
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	6e-04
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	6e-04
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	7e-04
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	7e-04
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	7e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	7e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	7e-04
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	8e-04
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	8e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	8e-04
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	8e-04
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	9e-04

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score =  147 bits (372), Expect = 9e-40
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 186 SVESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQD 245
           ++  DCI+HGY+ K+G PF++ WQ RY  LFPNRLE   E G++   L+ M++I+ V  +
Sbjct: 554 ALGKDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGE-GEAPQSLLTMEEIQSV--E 610

Query: 246 LITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLG 305
              +K  +C+ LK+    + VL               +  L +W   LR A++ +Q+L+ 
Sbjct: 611 ETQIKERKCLLLKIRGGKQFVLQCD-----------SDPELVQWKKELRDAYREAQQLVQ 659

Query: 306 SMARKAGKIYGT-TDREKNSILGTRTANG 333
            + +   K      +  K  ++   +ANG
Sbjct: 660 RVPKMKNKPRAPVVELSKVPLIQRGSANG 688

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 67.6 bits (165), Expect = 1e-12
 Identities = 38/51 (74%), Positives = 42/51 (82%), Gaps = 5/51 (9%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV 187
           + L +  +H     +RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV
Sbjct: 301 IILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV 351

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 5/47 (10%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKKP 183
           +   +  LH     +RDLKP NILLD+HGH+RISDLGLA    + + 
Sbjct: 295 ICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT 341

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 5/46 (10%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKK 182
           +   +  LH     +RDLKP N+LLD+ G+VRISDLGLA +    +
Sbjct: 298 IVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQ 343

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV 187
           L +++  L       RD+KP NILLDEHGHV I+D  +A    ++    ++
Sbjct: 124 LVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTM 174

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 55.4 bits (133), Expect = 9e-09
 Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 25/167 (14%)

Query: 18  VKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYK 76
           V  P          I  ++      R+ +     ++   HLR   PF       K  + +
Sbjct: 108 VHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIR 167

Query: 77  VTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKL--------RKCFIRRTVQLLEPVHTC 128
           V  +    +++      P+ Q +                       ++ T+Q++  + + 
Sbjct: 168 VRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASL 227

Query: 129 HSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLA 175
           H                   +H   L+P +I+LD+ G V ++     
Sbjct: 228 HHYG---------------LVH-TYLRPVDIVLDQRGGVFLTGFEHL 258

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 17/77 (22%)

Query: 100 RSKINRYHKKLRKCFIRR-TVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPAN 158
              I+  +   ++    R   Q+LE +   HS                  +H RDLKP N
Sbjct: 103 YDLIHSENLNQQRDEYWRLFRQILEALSYIHS-QGI--------------IH-RDLKPMN 146

Query: 159 ILLDEHGHVRISDLGLA 175
           I +DE  +V+I D GLA
Sbjct: 147 IFIDESRNVKIGDFGLA 163

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 119 VQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDF 178
            QL   +  CH   +    +          LH RDLKPAN+ LD   +V++ D GLA   
Sbjct: 118 TQLTLALKECHRRSDGGHTV----------LH-RDLKPANVFLDGKQNVKLGDFGLARIL 166

Query: 179 SKKKPHAS 186
           +     A 
Sbjct: 167 NHDTSFAK 174

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 19/68 (27%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K F+    QLL  +  CH    K              LH RDLKP N+L++E G ++++D
Sbjct: 103 KLFLF---QLLRGLAYCHR--QK-------------VLH-RDLKPQNLLINERGELKLAD 143

Query: 172 LGLACDFS 179
            GLA   S
Sbjct: 144 FGLARAKS 151

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 52.7 bits (126), Expect = 6e-08
 Identities = 25/176 (14%), Positives = 58/176 (32%), Gaps = 25/176 (14%)

Query: 15  KWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMN 73
            + V  P          I  ++      R+ +     ++   HLR   PF       K  
Sbjct: 100 SFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKK 159

Query: 74  LYKVTSEPNSHYIIGVRQSGPKDQIS--------RSKINRYHKKLRKCFIRRTVQLLEPV 125
           + +V  +    +++      P+ Q +         S  + +   +    ++ T+Q++  +
Sbjct: 160 MIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLL 219

Query: 126 HTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKK 181
            + H                   +H   L+P +I+LD+ G V ++          +
Sbjct: 220 ASLHH---YG------------LVH-TYLRPVDIVLDQRGGVFLTGFEHLVRDGAR 259

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 19/68 (27%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K  +    QLL  +   HS  ++              +H RDLKP NIL+   G ++++D
Sbjct: 123 KDMMF---QLLRGLDFLHS--HR-------------VVH-RDLKPQNILVTSSGQIKLAD 163

Query: 172 LGLACDFS 179
            GLA  +S
Sbjct: 164 FGLARIYS 171

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           + L++  LH     +RDLKP NILLD++GH++I+D G A
Sbjct: 115 VCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFA 153

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 19/68 (27%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K  +R   Q L  +   H+  N               +H RDLKP NIL+   G V+++D
Sbjct: 123 KDLMR---QFLRGLDFLHA--NC-------------IVH-RDLKPENILVTSGGTVKLAD 163

Query: 172 LGLACDFS 179
            GLA  +S
Sbjct: 164 FGLARIYS 171

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           +  ++  LH      RDLKP NILL+E  H++I+D G A
Sbjct: 139 IVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTA 177

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 19/68 (27%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K F+    QLL+ +  CHS                  LH RDLKP N+L++ +G +++++
Sbjct: 104 KSFLF---QLLKGLGFCHS--RN-------------VLH-RDLKPQNLLINRNGELKLAN 144

Query: 172 LGLACDFS 179
            GLA  F 
Sbjct: 145 FGLARAFG 152

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 19/82 (23%)

Query: 98  ISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPA 157
           +  S +      L K ++    QLL+ +  CHS  ++              LH RDLKP 
Sbjct: 92  MDASALTGIPLPLIKSYLF---QLLQGLAFCHS--HR-------------VLH-RDLKPQ 132

Query: 158 NILLDEHGHVRISDLGLACDFS 179
           N+L++  G ++++D GLA  F 
Sbjct: 133 NLLINTEGAIKLADFGLARAFG 154

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 19/68 (27%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K ++      L+ +   H   +               LH RDLKP N+LLDE+G ++++D
Sbjct: 115 KAYML---MTLQGLEYLHQ--HW-------------ILH-RDLKPNNLLLDENGVLKLAD 155

Query: 172 LGLACDFS 179
            GLA  F 
Sbjct: 156 FGLAKSFG 163

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 19/68 (27%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K F+    QLL  +  CH    +              LH RDLKP N+L++  G ++I+D
Sbjct: 103 KSFLL---QLLNGIAYCHD--RR-------------VLH-RDLKPQNLLINREGELKIAD 143

Query: 172 LGLACDFS 179
            GLA  F 
Sbjct: 144 FGLARAFG 151

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           + L+   LH     +RDLKP N+L+D+ G+++++D G A
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 19/68 (27%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K ++    QLL  V  CH   ++              LH RDLKP N+L++  G ++++D
Sbjct: 122 KIYLY---QLLRGVAHCHQ--HR-------------ILH-RDLKPQNLLINSDGALKLAD 162

Query: 172 LGLACDFS 179
            GLA  F 
Sbjct: 163 FGLARAFG 170

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           + L++  +H      RD+KP N+LLD+ GH++++D G  
Sbjct: 177 VVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTC 215

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           + L++  LH     +RD+K  NILLD +GHV ++D GL+
Sbjct: 168 IVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS 206

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           + +++  +H      RD+KP NIL+D +GH+R++D G  
Sbjct: 184 MVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSC 222

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 16/58 (27%)

Query: 118 TVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLA 175
           T QL+       S                  +H     P N+ +   G + + D+   
Sbjct: 200 TAQLIRLAANLQSKG---------------LVH-GHFTPDNLFIMPDGRLMLGDVSAL 241

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 19/68 (27%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K F     QLL+ +  CH   NK              LH RDLKP N+L+++ G +++ D
Sbjct: 111 KYFQW---QLLQGLAFCHE--NK-------------ILH-RDLKPQNLLINKRGQLKLGD 151

Query: 172 LGLACDFS 179
            GLA  F 
Sbjct: 152 FGLARAFG 159

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESD 190
           +H RDLKP+NI       V++ D GL     + +   +V + 
Sbjct: 186 MH-RDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTP 226

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           + +++  +H      RD+KP NILLD  GH+R++D G  
Sbjct: 171 IVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSC 209

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 19/64 (29%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K       Q L+ V+ CH   +              C+H RD+KP NIL+ +H  +++ D
Sbjct: 105 KSITW---QTLQAVNFCHK--HN-------------CIH-RDVKPENILITKHSVIKLCD 145

Query: 172 LGLA 175
            G A
Sbjct: 146 FGFA 149

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           L L++  LH     +RDLKP NILLDE GH++++D GL+
Sbjct: 135 LALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 173

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           +++++  LH     +RDLKP NI+L+  GHV+++D GL 
Sbjct: 130 ISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLC 168

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 19/64 (29%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           K  ++    LL  ++  H   NK              LH RD+K AN+L+   G ++++D
Sbjct: 127 KRVMQ---MLLNGLYYIHR--NK-------------ILH-RDMKAANVLITRDGVLKLAD 167

Query: 172 LGLA 175
            GLA
Sbjct: 168 FGLA 171

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           +  ++  LH     +RDLKP NILLD  GH+ ++D GL 
Sbjct: 148 IASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLC 186

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 19/64 (29%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD 171
           + ++    Q++  +  CHS  +               +H RD+KP NIL+ + G V++ D
Sbjct: 127 QKYLF---QIINGIGFCHS--HN-------------IIH-RDIKPENILVSQSGVVKLCD 167

Query: 172 LGLA 175
            G A
Sbjct: 168 FGFA 171

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           +  ++  LH     +RDLK  N+LLD  GH +++D G+ 
Sbjct: 133 IISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMC 171

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           ++L++  LH     +RDLK  N+LLD  GH++++D G+ 
Sbjct: 119 ISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC 157

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           ++L++  LH     +RDLK  N+LLD  GH++++D G+ 
Sbjct: 162 ISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC 200

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 11/54 (20%)

Query: 126 HTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFS 179
           H         P IA          H RDLK  NIL+ ++G   I+DLGLA   S
Sbjct: 122 HIEIFGTQGKPAIA----------H-RDLKSKNILVKKNGQCCIADLGLAVMHS 164

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           +  ++  LH     +RD+K  N++LD+ GH++I+D GL 
Sbjct: 114 IVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLC 152

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 23/73 (31%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL----DEHGHV 167
           K  +    Q+L+ +H  H+  N               LH RDLKPANIL+     E G V
Sbjct: 131 KSLLY---QILDGIHYLHA--NW-------------VLH-RDLKPANILVMGEGPERGRV 171

Query: 168 RISDLGLACDFSK 180
           +I+D+G A  F+ 
Sbjct: 172 KIADMGFARLFNS 184

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           + L +  LH     +RDLK  NILLD+ GH++I+D G+ 
Sbjct: 127 IILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMC 165

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           + + +  L      +RDLK  N++LD  GH++I+D G+ 
Sbjct: 130 IAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMC 168

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 13/29 (44%), Positives = 23/29 (79%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSK 180
           RD+KP+N+L+ E GH++I+D G++ +F  
Sbjct: 161 RDIKPSNLLVGEDGHIKIADFGVSNEFKG 189

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLAC 176
           +H R+LK  N+L+D+   V++ D GL+ 
Sbjct: 161 VH-RNLKSPNLLVDKKYTVKVCDFGLSR 187

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDC 191
           +H  D+KPANI L   G  ++ D GL  +          E D 
Sbjct: 179 VH-LDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDP 220

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 13/24 (54%), Positives = 21/24 (87%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+KP+NIL+D++G V++SD G +
Sbjct: 176 RDVKPSNILMDKNGRVKLSDFGES 199

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 126 HTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHA 185
           HT   +    P IA          H RDLK  NIL+ ++G   I+DLGLA  F       
Sbjct: 151 HTEIFSTQGKPAIA----------H-RDLKSKNILVKKNGTCCIADLGLAVKFISDTNEV 199

Query: 186 SVES 189
            +  
Sbjct: 200 DIPP 203

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESD 190
           +H RDLKP+NI       V++ D GL     + +   +V + 
Sbjct: 140 MH-RDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTP 180

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 6/40 (15%)

Query: 142 LTLSVPCLH------FRDLKPANILLDEHGHVRISDLGLA 175
           +  ++  LH      +RDLK  N++LD+ GH++I+D GL 
Sbjct: 257 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLC 296

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 143 TLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKK 181
           TL         L   ++++DE    RIS   +   F   
Sbjct: 129 TLEPLIPR-HALNSRSVMIDEDMTARISMADVKFSFQSP 166

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHG 195
           RDL   N+L+   G   ISD GL+   +  +     E D     
Sbjct: 144 RDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAIS 187

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 14/68 (20%)

Query: 119 VQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDF 178
            Q    V   H    K P+I           H RDLK  N+LL   G +++ D G A   
Sbjct: 143 YQTCRAVQHMHR--QKPPII-----------H-RDLKVENLLLSNQGTIKLCDFGSATTI 188

Query: 179 SKKKPHAS 186
           S    ++ 
Sbjct: 189 SHYPDYSW 196

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 16/56 (28%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLA 175
           +L + +H CH    +              +H RD+KP N+L+   G ++I+D G +
Sbjct: 122 ELADALHYCHE---RK------------VIH-RDIKPENLLMGYKGELKIADFGWS 161

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+KP N+LL   G ++I+D G +
Sbjct: 133 RDIKPENLLLGSAGELKIADFGWS 156

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
           LH RD+K  NI L + G V++ D G+A   +     A 
Sbjct: 147 LH-RDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELAR 183

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 17/85 (20%)

Query: 104 NRYHKKLRKCFIRR-TVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD 162
            R  +KL K        Q+ + V   HS   K     +        ++ RDLKP+NI L 
Sbjct: 113 KRRGEKLDKVLALELFEQITKGVDYIHS---KK----L--------IN-RDLKPSNIFLV 156

Query: 163 EHGHVRISDLGLACDFSKKKPHASV 187
           +   V+I D GL             
Sbjct: 157 DTKQVKIGDFGLVTSLKNDGKRTRS 181

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 25/74 (33%)

Query: 107 HKKL-----RKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL 161
            K+         F     QL++ +   HS               +  +H +D+KP N+LL
Sbjct: 103 EKRFPVCQAHGYF----CQLIDGLEYLHS-------------QGI--VH-KDIKPGNLLL 142

Query: 162 DEHGHVRISDLGLA 175
              G ++IS LG+A
Sbjct: 143 TTGGTLKISALGVA 156

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RDLK  N+ L+E   V+I D GLA
Sbjct: 139 RDLKLGNLFLNEDLEVKIGDFGLA 162

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 142 LTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLA 175
           + + +  L      +RDLK  N++LD  GH++I+D G+ 
Sbjct: 451 IAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMC 489

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RDLK  N+ L+E   V+I D GLA
Sbjct: 165 RDLKLGNLFLNEDLEVKIGDFGLA 188

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 126 HTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHA 185
           H         P IA          H RDLK  NIL+ ++G   I+DLGLA          
Sbjct: 156 HMEIVGTQGKPAIA----------H-RDLKSKNILVKKNGTCCIADLGLAVRHDSATDTI 204

Query: 186 SVES 189
            +  
Sbjct: 205 DIAP 208

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 16/56 (28%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLA 175
            LL  V   HSA              +  LH RDLKPAN L+++   V++ D GLA
Sbjct: 164 NLLVGVKYVHSA-------------GI--LH-RDLKPANCLVNQDCSVKVCDFGLA 203

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 152 RDLKPANILLDEHGHVRISDLGLAC 176
           RDLK  NI L E   V+I D GLA 
Sbjct: 144 RDLKSNNIFLHEDNTVKIGDFGLAT 168

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 16/59 (27%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDF 178
            LLE +   H              L++  +H RDLKP NILLD+  +++++D G +C  
Sbjct: 132 ALLEVICALHK-------------LNI--VH-RDLKPENILLDDDMNIKLTDFGFSCQL 174

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 22/91 (24%)

Query: 101 SKINRYHKKLRKCF----IRR-TVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK 155
             I  + KK ++      + +  VQL   +   HS   +     +        +H RD+K
Sbjct: 121 RMIKHF-KKQKRLIPERTVWKYFVQLCSALEHMHS---RR----V--------MH-RDIK 163

Query: 156 PANILLDEHGHVRISDLGLACDFSKKKPHAS 186
           PAN+ +   G V++ DLGL   FS K   A 
Sbjct: 164 PANVFITATGVVKLGDLGLGRFFSSKTTAAH 194

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
           RD+K  N+LL  +    I+D GLA  F   K    
Sbjct: 155 RDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGD 189

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RDL  +N+LL  + +++I+D GLA
Sbjct: 136 RDLTLSNLLLTRNMNIKIADFGLA 159

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDC 191
           RD+KP N+LLDE  +++ISD GLA  F        +   C
Sbjct: 129 RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 168

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 16/68 (23%)

Query: 119 VQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDF 178
           + +   +   H+                   H RDLKP NILL + G   + DLG     
Sbjct: 141 LGICRGLEAIHA----KGYA-----------H-RDLKPTNILLGDEGQPVLMDLGSMNQA 184

Query: 179 SKKKPHAS 186
                 + 
Sbjct: 185 CIHVEGSR 192

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDC 191
           RD+KP N+LLDE  +++ISD GLA  F        +   C
Sbjct: 129 RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 168

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 16/59 (27%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDF 178
            LLE V   H+              ++  +H RDLKP NILLD++  +R+SD G +C  
Sbjct: 208 SLLEAVSFLHA-------------NNI--VH-RDLKPENILLDDNMQIRLSDFGFSCHL 250

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 23/133 (17%)

Query: 53  EIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRK 112
            + + L                   T             +G       S      +KL  
Sbjct: 114 HLLDKLNVF--IDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLIS 171

Query: 113 CFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL--DEHGHVRIS 170
             +R   Q+   +H  H+   +               H RD+KP N L   ++   +++ 
Sbjct: 172 NIMR---QIFSALHYLHN---QG------------ICH-RDIKPENFLFSTNKSFEIKLV 212

Query: 171 DLGLACDFSKKKP 183
           D GL+ +F K   
Sbjct: 213 DFGLSKEFYKLNN 225

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 18/88 (20%)

Query: 105 RYHKKLRKCFIRR-TVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE 163
           +  K +     +     +LE VHT H          I        +H  DLKPAN L+ +
Sbjct: 119 KKKKSIDPWERKSYWKNMLEAVHTIHQ---HG----I--------VH-SDLKPANFLIVD 162

Query: 164 HGHVRISDLGLACDFSKKKPHASVESDC 191
            G +++ D G+A            +S  
Sbjct: 163 -GMLKLIDFGIANQMQPDTTSVVKDSQV 189

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 18/88 (20%)

Query: 105 RYHKKLRKCFIRR-TVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE 163
           +  K +     +     +LE VHT H          I        +H  DLKPAN L+ +
Sbjct: 100 KKKKSIDPWERKSYWKNMLEAVHTIHQ---HG----I--------VH-SDLKPANFLIVD 143

Query: 164 HGHVRISDLGLACDFSKKKPHASVESDC 191
            G +++ D G+A            +S  
Sbjct: 144 -GMLKLIDFGIANQMQPDTTSVVKDSQV 170

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 24/73 (32%)

Query: 112 KCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD-----EHGH 166
           K F+    QL+  V+ CHS   +             CLH RDLKP N+LL      E   
Sbjct: 135 KSFLY---QLINGVNFCHS--RR-------------CLH-RDLKPQNLLLSVSDASETPV 175

Query: 167 VRISDLGLACDFS 179
           ++I D GLA  F 
Sbjct: 176 LKIGDFGLARAFG 188

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 145 SVPCLHFRDLKPANILLDEHGHVRISDLGLAC 176
           S+  +H RDL   N L+ E+ +V ++D GLA 
Sbjct: 126 SMNIIH-RDLNSHNCLVRENKNVVVADFGLAR 156

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 5/32 (15%)

Query: 149 LH-----FRDLKPANILLDEHGHVRISDLGLA 175
           LH      RD+K ANILLDE    +ISD GLA
Sbjct: 149 LHENHHIHRDIKSANILLDEAFTAKISDFGLA 180

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 149 LHFRDLKPANILLDEHG-HVRISDLGLACD 177
           +H RDLKP N+LL   G  ++I D G ACD
Sbjct: 127 IH-RDLKPPNLLLVAGGTVLKICDFGTACD 155

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+KP NIL+D +  ++I D G+A
Sbjct: 135 RDIKPQNILIDSNKTLKIFDFGIA 158

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFS 179
           RDLK  N+LLD   +++I+D G + +F+
Sbjct: 138 RDLKAENLLLDADMNIKIADFGFSNEFT 165

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 18/88 (20%)

Query: 105 RYHKKLRKCFIRR-TVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE 163
           +  K +     +     +LE VHT H          I        +H  DLKPAN L+ +
Sbjct: 147 KKKKSIDPWERKSYWKNMLEAVHTIHQ---HG----I--------VH-SDLKPANFLIVD 190

Query: 164 HGHVRISDLGLACDFSKKKPHASVESDC 191
            G +++ D G+A            +S  
Sbjct: 191 -GMLKLIDFGIANQMQPDTTSVVKDSQV 217

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLA 175
            H RD+KP NIL+       + D G+A
Sbjct: 156 TH-RDVKPENILVSADDFAYLVDFGIA 181

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 16/35 (45%), Positives = 19/35 (54%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
           RD+K ANILLDE     + D GLA     K  H +
Sbjct: 158 RDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVT 192

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 14/24 (58%), Positives = 21/24 (87%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RDLKP N+LLD++ +V+I+D GL+
Sbjct: 132 RDLKPENLLLDDNLNVKIADFGLS 155

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RDLKP N+LLD H + +I+D GL+
Sbjct: 135 RDLKPENVLLDAHMNAKIADFGLS 158

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESD 190
           +H RDLKP+N+L++ +  +++ D GLA    +     S  + 
Sbjct: 134 IH-RDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTG 174

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+K  NI++ E   +++ D G A
Sbjct: 154 RDIKDENIVIAEDFTIKLIDFGSA 177

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+KPANI++     V++ D G+A
Sbjct: 140 RDVKPANIMISATNAVKVMDFGIA 163

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RDLKP N+LLD H + +I+D GL+
Sbjct: 140 RDLKPENVLLDAHMNAKIADFGLS 163

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESD 190
           LH RD+KP+NILL+   HV+++D GL+  F   +   +    
Sbjct: 131 LH-RDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPL 171

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLA 175
           +H RDLKPAN LL++   V++ D GLA
Sbjct: 151 IH-RDLKPANCLLNQDCSVKVCDFGLA 176

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHA 185
           LH RDLKP+N+LL+    ++I D GLA        H 
Sbjct: 150 LH-RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHT 185

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 17/57 (29%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD-EHGHVRISDLGLA 175
           ++L+ +  CHS               +  +H RD+KP N+++D EH  +R+ D GLA
Sbjct: 138 EILKALDYCHSM-------------GI--MH-RDVKPHNVMIDHEHRKLRLIDWGLA 178

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 6/43 (13%)

Query: 144 LSVPCLHFRDLKPANILLDEHG-----HVRISDLGLACDFSKK 181
            + P +H RDL+  NI L           +++D GL+      
Sbjct: 141 QNPPIVH-RDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHS 182

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 145 SVPCLHFRDLKPANILLDEHGHVRISDLGLAC 176
           +   LH +DLK  N+  D    V I+D GL  
Sbjct: 148 AKGILH-KDLKSKNVFYDNG-KVVITDFGLFS 177

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 22/79 (27%)

Query: 97  QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKP 156
           +I   K +    +     +    Q+L+ +   HSA                 +H RDLKP
Sbjct: 117 KIMGLKFSEEKIQY---LV---YQMLKGLKYIHSAG---------------VVH-RDLKP 154

Query: 157 ANILLDEHGHVRISDLGLA 175
            N+ ++E   ++I D GLA
Sbjct: 155 GNLAVNEDCELKILDFGLA 173

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLA 175
           +H RDL P NILL ++  + I D  LA
Sbjct: 156 VH-RDLHPGNILLADNNDITICDFNLA 181

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 21/66 (31%)

Query: 111 RKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD-EHGHVRI 169
           R  F     Q++  +  CHS               V  +H RD+K  NIL+D   G  ++
Sbjct: 142 RCFF----GQVVAAIQHCHS-------------RGV--VH-RDIKDENILIDLRRGCAKL 181

Query: 170 SDLGLA 175
            D G  
Sbjct: 182 IDFGSG 187

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 10/24 (41%), Positives = 19/24 (79%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+KP+N+L++  G V++ D G++
Sbjct: 134 RDVKPSNVLINALGQVKMCDFGIS 157

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 22/91 (24%)

Query: 96  DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK 155
                       +      I+   Q+LE V+  H               ++  +H  DLK
Sbjct: 118 SLCLPELAEMVSENDVIRLIK---QILEGVYYLHQ-------------NNI--VH-LDLK 158

Query: 156 PANILL---DEHGHVRISDLGLACDFSKKKP 183
           P NILL      G ++I D G++        
Sbjct: 159 PQNILLSSIYPLGDIKIVDFGMSRKIGHACE 189

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLA 175
           +H RDLKP N+ ++E   ++I D GLA
Sbjct: 150 IH-RDLKPGNLAVNEDCELKILDFGLA 175

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSKKK 182
           RD+K  NILL E G V++ D G A   +   
Sbjct: 178 RDVKAGNILLSEPGLVKLGDFGSASIMAPAN 208

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLA 175
           +H RDLKP+N+ ++E   ++I D GLA
Sbjct: 154 IH-RDLKPSNLAVNEDCELKILDFGLA 179

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 12/22 (54%), Positives = 18/22 (81%)

Query: 152 RDLKPANILLDEHGHVRISDLG 173
           RD+KP+NILLD  G++++ D G
Sbjct: 150 RDIKPSNILLDRSGNIKLCDFG 171

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 21/66 (31%)

Query: 111 RKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD-EHGHVRI 169
           R  F     Q+LE V  CH+               V  LH RD+K  NIL+D   G +++
Sbjct: 152 RSFF----WQVLEAVRHCHN-------------CGV--LH-RDIKDENILIDLNRGELKL 191

Query: 170 SDLGLA 175
            D G  
Sbjct: 192 IDFGSG 197

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+K  NILLDE+   +I+D G++
Sbjct: 163 RDVKSINILLDENFVPKITDFGIS 186

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 16/71 (22%)

Query: 107 HKKLRKCFIRR-TVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH- 164
            K ++   +R    Q+L+ +   H+   + P I          +H RDLK  NI +    
Sbjct: 123 FKVMKIKVLRSWCRQILKGLQFLHT---RTPPI----------IH-RDLKCDNIFITGPT 168

Query: 165 GHVRISDLGLA 175
           G V+I DLGLA
Sbjct: 169 GSVKIGDLGLA 179

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 19/64 (29%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL---DEHGHVRISDLGLAC 176
           Q+LE +  CH               ++  +H RD+KP  +LL   +    V++   G+A 
Sbjct: 138 QILEALRYCHD-------------NNI--IH-RDVKPHCVLLASKENSAPVKLGGFGVAI 181

Query: 177 DFSK 180
              +
Sbjct: 182 QLGE 185

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 13/129 (10%)

Query: 56  NHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFI 115
            +LR++  +   + +K    +     +    I V      D I+ S+ +     + +  +
Sbjct: 116 TYLRSK--RNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSL 173

Query: 116 RRTVQLLEPVHTCHSALNKNPLIAI---------FLTLSVPCLHFRDLKPANILLDEHGH 166
               +   P       L    LI           FL  S  C+H RDL   NILL E   
Sbjct: 174 SDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA-SRKCIH-RDLAARNILLSEKNV 231

Query: 167 VRISDLGLA 175
           V+I D GLA
Sbjct: 232 VKICDFGLA 240

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+K  N+LL E+  V++ D G++
Sbjct: 153 RDIKGQNVLLTENAEVKLVDFGVS 176

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 148 CLHFRDLKPANILLDEHGHVRISDLGLA 175
            +H R +K ++IL+   G V +S L   
Sbjct: 149 YVH-RSVKASHILISVDGKVYLSGLRSN 175

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 42/323 (13%), Positives = 94/323 (29%), Gaps = 89/323 (27%)

Query: 8   PRESR--VSKW-RVKPPSLKP---LGFPIQIGML--RHRPHESRVAKWRPYIQEIFNHLR 59
           P E +  + K+   +P  L        P ++ ++    R   +    W+    +    + 
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI- 358

Query: 60  NEPFKKCVLLFKMNLYKVTSEPNSHY----IIGVRQSGPKD-QISRSKINRYHKKLRKCF 114
               +  + + +   Y+        +    +       P    I    ++     +    
Sbjct: 359 ---IESSLNVLEPAEYR------KMFDRLSVF------PPSAHIPTILLSLIWFDV---- 399

Query: 115 IRRTVQLLEPVHTCH--SALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDL 172
           I+  V ++  V+  H  S + K P      T+S+P ++  +LK          H  I   
Sbjct: 400 IKSDVMVV--VNKLHKYSLVEKQPK---ESTISIPSIYL-ELKVKLENEYAL-HRSI--- 449

Query: 173 GLACDFSKKKPHASVESDCILHGYI-KKLGGPFVSAWQTRYAKLFPN------------- 218
            +      K   +       L  Y    +G    +        LF               
Sbjct: 450 -VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 219 -----------------RLEL--------HPESGQSKPELI-FMDQIEEVSQDLITVKGE 252
                            +L+          P+  +    ++ F+ +IEE   +LI  K  
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE---NLICSKYT 565

Query: 253 QCVQLKLTRDTRIVLTNPVSQIK 275
             +++ L  +   +      Q++
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQ 588

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 9/43 (20%)

Query: 146 VPCLHFRDLKPANILLDEHGH--------VRISDLGLACDFSK 180
           VP +H RDLK +NIL+ +           ++I+D GLA ++ +
Sbjct: 127 VPIIH-RDLKSSNILILQKVENGDLSNKILKITDFGLAREWHR 168

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 13/24 (54%), Positives = 20/24 (83%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+KP+NILLDE G +++ D G++
Sbjct: 149 RDVKPSNILLDERGQIKLCDFGIS 172

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 23/74 (31%)

Query: 114 FIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL----DEHGHVRI 169
           F++   Q+L+ VH  HS               +   H  DLKP NI+L      +  +++
Sbjct: 113 FLK---QILDGVHYLHS-------------KRI--AH-FDLKPENIMLLDKNVPNPRIKL 153

Query: 170 SDLGLACDFSKKKP 183
            D G+A        
Sbjct: 154 IDFGIAHKIEAGNE 167

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLA 175
           +H RDLKP+NI++     ++I D GLA
Sbjct: 186 IH-RDLKPSNIVVKSDCTLKILDFGLA 211

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLA 175
           +H RD+KP+NIL++  G +++ D G++
Sbjct: 154 MH-RDVKPSNILVNSRGEIKLCDFGVS 179

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL---DEHGHVRISDLGLAC 176
           Q+L  +   H                +  +H RDLKP N+LL    +  ++RI D GL+ 
Sbjct: 134 QVLSGITYMHK-------------NKI--VH-RDLKPENLLLESKSKDANIRIIDFGLST 177

Query: 177 DFSKKKPHASV 187
            F   K     
Sbjct: 178 HFEASKKMKDK 188

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+K  NILL E G V+I+D G++
Sbjct: 145 RDVKAGNILLGEDGSVQIADFGVS 168

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLA 175
           +H RDLKP+NI++     ++I D GLA
Sbjct: 149 IH-RDLKPSNIVVKSDCTLKILDFGLA 174

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 14/24 (58%), Positives = 20/24 (83%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+K AN+LL EHG V+++D G+A
Sbjct: 143 RDIKAANVLLSEHGEVKLADFGVA 166

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 19/67 (28%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL---DEHGHVRISDLGLAC 176
           Q+   +   H               ++  +H RDLKP NILL   ++   ++I D GL+ 
Sbjct: 129 QVFSGITYMHK-------------HNI--VH-RDLKPENILLESKEKDCDIKIIDFGLST 172

Query: 177 DFSKKKP 183
            F +   
Sbjct: 173 CFQQNTK 179

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+K  NILL   G V+++D G  
Sbjct: 140 RDIKSDNILLGMDGSVKLTDFGFC 163

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLA 175
           ++  DLKP NI+L E   +++ DLG  
Sbjct: 204 VY-NDLKPENIMLTEEQ-LKLIDLGAV 228

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 23/74 (31%)

Query: 114 FIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL----DEHGHVRI 169
           FI+   Q+L+ V+  H+               +   H  DLKP NI+L        H+++
Sbjct: 120 FIK---QILDGVNYLHT-------------KKI--AH-FDLKPENIMLLDKNIPIPHIKL 160

Query: 170 SDLGLACDFSKKKP 183
            D GLA +      
Sbjct: 161 IDFGLAHEIEDGVE 174

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 19/67 (28%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL---DEHGHVRISDLGLAC 176
           Q+L  V   H               ++  +H RDLKP N+LL   ++   ++I D GL+ 
Sbjct: 144 QVLSGVTYLHK-------------HNI--VH-RDLKPENLLLESKEKDALIKIVDFGLSA 187

Query: 177 DFSKKKP 183
            F  +K 
Sbjct: 188 VFENQKK 194

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 152 RDLKPANILLDEHGHVRISDLGLA 175
           RD+K  +ILL   G V++SD G  
Sbjct: 165 RDIKSDSILLTLDGRVKLSDFGFC 188

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 152 RDLKPANILL----DEHGHVRISDLGLACDFSKKKPHASV 187
           R++KP NI+     D     +++D G A +    +   S+
Sbjct: 136 RNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSL 175

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 148 CLHFRDLKPANILLDEHGHVRISDLGLA 175
            +H RDLK  N+L+   G +R++D G++
Sbjct: 138 IIH-RDLKAGNVLMTLEGDIRLADFGVS 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.98
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.98
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.98
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.98
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.98
3niz_A	311	Rhodanese family protein; structural genomics, str	99.98
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.98
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.98
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.98
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.98
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.97
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.97
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.97
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.97
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.97
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.97
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.97
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.97
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.97
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.97
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.97
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.97
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.97
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.97
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.97
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.97
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.97
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.97
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.97
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.97
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.97
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.97
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.97
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.97
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.97
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.97
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.97
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.97
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.97
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.97
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.97
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.97
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.97
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.97
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.97
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.97
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.97
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.97
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.97
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.97
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.97
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.97
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.97
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.97
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.97
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.97
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.97
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.97
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.97
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.97
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.97
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.97
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.97
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.97
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.97
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.97
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.97
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.97
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.97
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.97
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.97
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.97
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.97
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.97
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.97
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.97
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.97
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.97
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.97
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.97
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.97
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.97
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.96
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.96
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.96
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.96
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.96
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.96
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.96
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.96
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.96
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.96
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.96
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.96
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.96
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.96
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.96
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.96
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.96
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.96
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.96
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.96
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.96
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.96
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.96
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.96
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.96
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.96
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.96
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.96
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.96
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.96
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.96
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.96
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.96
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.96
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.96
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.96
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.96
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.96
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.96
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.96
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.96
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.96
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.96
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.96
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.96
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.96
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.96
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.96
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.96
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.96
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.96
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.96
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.96
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.96
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.96
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.96
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.96
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.96
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.96
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.96
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.96
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.96
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.96
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.96
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.96
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.96
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.96
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.96
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.96
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.96
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.96
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.96
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.96
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.96
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.96
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.96
3bhy_A	283	Death-associated protein kinase 3; death associate	99.96
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.96
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.96
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.96
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.96
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.96
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.96
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.96
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.96
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.96
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.96
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.96
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.96
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.96
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.96
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.96
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.96
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.96
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.96
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.96
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.96
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.96
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.96
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.96
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.96
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.96
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.96
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.96
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.96
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.96
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.95
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.95
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.95
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.95
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.95
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.95
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.95
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.95
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.95
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.95
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.95
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.95
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.95
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.95
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.95
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.95
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.95
3uqc_A	286	Probable conserved transmembrane protein; structur	99.95
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.95
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.95
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.95
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.95
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.95
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.95
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.95
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.95
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.95
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.95
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.95
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.95
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.95
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.94
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.94
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.94
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.94
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.94
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.94
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.93
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.89
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.84
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.78
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.56
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.19
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.09
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.9
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.62
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.59
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.52
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.43
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.19
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.15
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.73
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.7
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.67
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.51
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.42
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	97.17
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.06
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.91
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	96.9
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.89
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.76
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.7
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.61
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	96.14
3mes_A	424	Choline kinase; malaria, structural genomics, stru	95.82
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	93.3
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	90.42
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	81.5

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.6e-43  Score=330.01  Aligned_cols=230  Identities=16%  Similarity=0.115  Sum_probs=172.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||++++........+.+.+|+++|+.|+||||        |++++++.+++.+|||||||
T Consensus        34 ~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnI--------V~~~~~~~~~~~~yiVmEy~  105 (350)
T 4b9d_A           34 EGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNI--------VQYRESFEENGSLYIVMDYC  105 (350)
T ss_dssp             -----CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCC--------CcEEEEEEECCEEEEEEeCC
Confidence            5788899999999999999999999877666567789999999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|| + +++.......+   .+..++.++.||+.||.|||+++                |+||||||+|||++++|.+||
T Consensus       106 ~gg~L~~~i~~~~~~~~---~e~~~~~~~~qi~~aL~ylH~~~----------------IiHRDlKp~NILl~~~g~vKl  166 (350)
T 4b9d_A          106 EGGDLFKRINAQKGVLF---QEDQILDWFVQICLALKHVHDRK----------------ILHRDIKSQNIFLTKDGTVQL  166 (350)
T ss_dssp             TTCBHHHHHHHTTTCCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CEETTCCGGGEEECTTCCEEE
T ss_pred             CCCcHHHHHHHcCCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeeccCCHHHEEECCCCCEEE
Confidence            988 4 44433322223   34455667789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCcccccccccc-ccCCc-ceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKK-LGGPF-VSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~~~-~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||+|+.+....  ..+.+||+.||+||+.. ..|+. +|+|+   ++|+++ ++.+||.+.+.......+........
T Consensus       167 ~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyeml-tG~~PF~~~~~~~~~~~i~~~~~~~~  245 (350)
T 4b9d_A          167 GDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELC-TLKHAFEAGSMKNLVLKIISGSFPPV  245 (350)
T ss_dssp             CSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHH-HSSCSCCCSSHHHHHHHHHHTCCCCC
T ss_pred             cccccceeecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHH-HCCCCCCCcCHHHHHHHHHcCCCCCC
Confidence            9999999776543  24567999999999853 44555 45555   555554 56778887764433333444443333


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +..++ ....+.+..++..||..|++..
T Consensus       246 ~~~~s-~~~~~li~~~L~~dP~~R~s~~  272 (350)
T 4b9d_A          246 SLHYS-YDLRSLVSQLFKRNPRDRPSVN  272 (350)
T ss_dssp             CTTSC-HHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CccCC-HHHHHHHHHHccCChhHCcCHH
Confidence            32322 2455677777788999887654

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=3.1e-43  Score=323.06  Aligned_cols=228  Identities=18%  Similarity=0.147  Sum_probs=174.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.||+|.++.+|+.||||++.+... +....+.+.+|+++|+.++||||        |++|++|++++.+||||||
T Consensus        42 ~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnI--------v~l~~~~~~~~~~yivmEy  113 (311)
T 4aw0_A           42 EGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFF--------VKLYFTFQDDEKLYFGLSY  113 (311)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             cccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEEeCCEEEEEEec
Confidence            57888999999999999999999986543 22234578899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+|| +..++.. ...+   .+..+..++.||+.||.|||+++                |+||||||+|||++++|.+||
T Consensus       114 ~~gG~L~~~i~~-~~~l---~e~~~~~~~~qi~~al~ylH~~~----------------IiHRDlKPeNILl~~~g~vKl  173 (311)
T 4aw0_A          114 AKNGELLKYIRK-IGSF---DETCTRFYTAEIVSALEYLHGKG----------------IIHRDLKPENILLNEDMHIQI  173 (311)
T ss_dssp             CTTEEHHHHHHH-HSSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECTTSCEEE
T ss_pred             CCCCCHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CccCCCCHHHeEEcCCCCEEE
Confidence            9998 4333232 2244   34445566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCC----CCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhccccc
Q psy6542         170 SDLGLACDFSKK----KPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIE  240 (334)
Q Consensus       170 ~DFGla~~~~~~----~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  240 (334)
                      +|||+|+.+...    ...+.+||+.||+||+. ..+|+.+.|||    ++|++ .++.+||.+.+.....+.+....+ 
T Consensus       174 ~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyem-l~G~~PF~~~~~~~~~~~i~~~~~-  251 (311)
T 4aw0_A          174 TDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQL-VAGLPPFRAGNEGLIFAKIIKLEY-  251 (311)
T ss_dssp             CCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHH-HHSSCSSCCSSHHHHHHHHHHTCC-
T ss_pred             EEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHcCCC-
Confidence            999999977533    23567899999999985 34566555555    55555 456778987764444444444333 


Q ss_pred             ccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         241 EVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       241 ~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .++..++ ....+.+...+..||..|++..
T Consensus       252 ~~p~~~s-~~~~dli~~lL~~dp~~R~t~~  280 (311)
T 4aw0_A          252 DFPEKFF-PKARDLVEKLLVLDATKRLGCE  280 (311)
T ss_dssp             CCCTTCC-HHHHHHHHHHSCSSGGGSTTSG
T ss_pred             CCCcccC-HHHHHHHHHHccCCHhHCcChH
Confidence            2343333 2456677777788999999876

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=2.7e-42  Score=321.35  Aligned_cols=183  Identities=16%  Similarity=0.178  Sum_probs=149.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.||+.||||++......  ..+.+.+|+++|+.++||||        |++|++|.+++.+|||||||
T Consensus        84 ~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~Ei~il~~l~HpnI--------V~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           84 EGSTGIVCIATVRSSGKLVAVKKMDLRKQQ--RRELLFNEVVIMRDYQHENV--------VEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEGGGCS--SGGGGHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEECCC
T ss_pred             cCcCeEEEEEEECCCCCEEEEEEEecCchh--HHHHHHHHHHHHHhCCCCCC--------CcEEEEEEECCEEEEEEeCC
Confidence            588899999999999999999999865443  23467789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|| +..+...  ..+   .+..+..++.||+.||.|||+++                ||||||||+|||++.+|.+||+
T Consensus       154 ~gg~L~~~l~~--~~l---~e~~~~~~~~qi~~aL~ylH~~~----------------IiHRDlKp~NILl~~~g~vKl~  212 (346)
T 4fih_A          154 EGGALTDIVTH--TRM---NEEQIAAVCLAVLQALSVLHAQG----------------VIHRDIKSDSILLTHDGRVKLS  212 (346)
T ss_dssp             TTEEHHHHHHH--SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTCCEEEC
T ss_pred             CCCcHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccccCCHHHEEECCCCCEEEe
Confidence            998 5444332  234   44555677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc-ccCCcc-eeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK-LGGPFV-SAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~~~~-~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+|+.+....  ..+.+||+.||+||+.. ..|+.+ |+|+   ++|+++ ++.+||.+.+
T Consensus       213 DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml-~G~~PF~~~~  274 (346)
T 4fih_A          213 DFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV-DGEPPYFNEP  274 (346)
T ss_dssp             CCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHH-HSSCTTTTSC
T ss_pred             cCcCceecCCCCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHH-HCCCCCCCcC
Confidence            999999775543  45678999999999853 445554 4555   555555 5677887665

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=9.4e-42  Score=311.12  Aligned_cols=188  Identities=15%  Similarity=0.082  Sum_probs=151.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec----CCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE----PNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~----~~~~~iv   87 (334)
                      +|+.+.||+|.++.+|+.||||.+..........+.+.+|+++|+.++||||        |++|++|.+    ++.+|||
T Consensus        36 ~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnI--------V~~~~~~~~~~~~~~~~~lv  107 (290)
T 3fpq_A           36 RGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI--------VRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTB--------CCEEEEEEEEETTEEEEEEE
T ss_pred             cCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCC--------CcEEEEEeeccCCCcEEEEE
Confidence            6888999999999999999999998776655566789999999999999999        999999874    3568999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-CC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-HG  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-~~  165 (334)
                      ||||+|| +..+.... ..+   .+..+..|+.||+.||.|||+++              |+|+||||||+|||+++ +|
T Consensus       108 mEy~~gg~L~~~l~~~-~~l---~~~~~~~~~~qi~~aL~ylH~~~--------------~~IiHRDlKp~NILl~~~~g  169 (290)
T 3fpq_A          108 TELMTSGTLKTYLKRF-KVM---KIKVLRSWCRQILKGLQFLHTRT--------------PPIIHRDLKCDNIFITGPTG  169 (290)
T ss_dssp             EECCCSCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHTSS--------------SCCCCCCCCGGGEEESSTTS
T ss_pred             EeCCCCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC--------------CCEEecccChhheeEECCCC
Confidence            9999998 44333322 233   44556677789999999999987              45999999999999975 78


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccccccCCc-ceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPF-VSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~~~~~-~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+|+........+.+||+.||+||+....|+. +|+||   ++|++++ +.+||.+.+
T Consensus       170 ~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyellt-g~~Pf~~~~  233 (290)
T 3fpq_A          170 SVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMAT-SEYPYSECQ  233 (290)
T ss_dssp             CEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHH-SSCTTTTCS
T ss_pred             CEEEEeCcCCEeCCCCccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCCC
Confidence            999999999997777667778999999999997656655 55555   6666655 566775543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3.5e-42  Score=311.53  Aligned_cols=185  Identities=24%  Similarity=0.284  Sum_probs=136.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+...||+|.++.+|+.||||++++... +....+.+.+|+++|+.++||||        |++++++.+++.+||||||
T Consensus        23 ~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnI--------v~~~~~~~~~~~~~ivmEy   94 (275)
T 3hyh_A           23 EGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHI--------IKLYDVIKSKDEIIMVIEY   94 (275)
T ss_dssp             C---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             cCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCC--------CeEEEEEEECCEEEEEEeC
Confidence            57888999999999999999999987654 33345678899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+|+ ++.+...  ..+   .+..+..++.||+.||.|||+++                |+||||||+|||+++++.+||
T Consensus        95 ~~g~L~~~l~~~--~~l---~e~~~~~~~~qi~~al~ylH~~~----------------IiHRDiKP~NILl~~~~~vkl  153 (275)
T 3hyh_A           95 AGNELFDYIVQR--DKM---SEQEARRFFQQIISAVEYCHRHK----------------IVHRDLKPENLLLDEHLNVKI  153 (275)
T ss_dssp             CCEEHHHHHHHS--CSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCTTTEEECTTCCEEE
T ss_pred             CCCCHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccccCChHHeEECCCCCEEE
Confidence            9777 4444332  234   44555667779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-CCccccCcccccccccc-cc-C-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK-PHASVESDCILHGYIKK-LG-G-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~-~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||+|+...... ..+.+||+.||+||+.. .. + ..+|+|+   ++|+++ ++.+||.+.+
T Consensus       154 ~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~ll-tg~~PF~~~~  216 (275)
T 3hyh_A          154 ADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVML-CRRLPFDDES  216 (275)
T ss_dssp             CCSSCC---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHH-HSSCSSCCSS
T ss_pred             eecCCCeecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHH-HCCCCCCCCC
Confidence            9999998765544 35578999999999853 33 3 3567777   555554 5667887654

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2.1e-41  Score=322.79  Aligned_cols=183  Identities=16%  Similarity=0.188  Sum_probs=149.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.||+.||||++......  ..+.+.+|+++|+.++||||        |++|++|.+++.+|||||||
T Consensus       161 ~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~Ei~il~~l~HpnI--------V~l~~~~~~~~~~~iVmEy~  230 (423)
T 4fie_A          161 EGSTGIVCIATVRSSGKLVAVKKMDLRKQQ--RRELLFNEVVIMRDYQHENV--------VEMYNSYLVGDELWVVMEFL  230 (423)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEESTTCS--SGGGHHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             cCcCcEEEEEEECCCCCEEEEEEEeccchh--HHHHHHHHHHHHHhCCCCCC--------CceEEEEEECCEEEEEEeCC
Confidence            578899999999999999999999876543  24568889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|| +..+...  ..+   .+..+..++.||+.||.|||+++                ||||||||+|||++.+|.+||+
T Consensus       231 ~gG~L~~~i~~--~~l---~e~~~~~~~~qil~aL~ylH~~~----------------IiHRDiKp~NILl~~~g~vKl~  289 (423)
T 4fie_A          231 EGGALTDIVTH--TRM---NEEQIAAVCLAVLQALSVLHAQG----------------VIHRDIKSDSILLTHDGRVKLS  289 (423)
T ss_dssp             TTEEHHHHHHH--SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSTTTEEECTTCCEEEC
T ss_pred             CCCcHHHHHhc--cCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecccCCHHHEEEcCCCCEEEe
Confidence            999 5444332  234   44556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc-ccCCc-ceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK-LGGPF-VSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~~~-~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+|+.+....  ..+.+||+.||+||+.. ..|.. +|+|+   ++|+++ .+.+||.+.+
T Consensus       290 DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml-~G~~PF~~~~  351 (423)
T 4fie_A          290 DFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV-DGEPPYFNEP  351 (423)
T ss_dssp             CCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHH-HSSCTTTTSC
T ss_pred             cCccceECCCCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHH-HCCCCCCCcC
Confidence            999999775543  45678999999999853 44554 55555   555555 4667887655

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.7e-41  Score=313.53  Aligned_cols=233  Identities=16%  Similarity=0.068  Sum_probs=169.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.||+.||||+++....       ..+|+++|+.++||||        |++|+++.+++.+|||||||
T Consensus        68 ~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-------~~~E~~il~~l~HpnI--------V~l~~~~~~~~~~~ivmEy~  132 (336)
T 4g3f_A           68 RGSFGEVHRMKDKQTGFQCAVKKVRLEVF-------RVEELVACAGLSSPRI--------VPLYGAVREGPWVNIFMELL  132 (336)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEETTTC-------CTHHHHTTTTCCCTTB--------CCEEEEEEETTEEEEEECCC
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEECHHHh-------HHHHHHHHHhCCCCCC--------CcEEEEEEECCEEEEEEecc
Confidence            57888999999999999999999985432       2469999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-CEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-HVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-~vkl  169 (334)
                      +|| +..++... ..+   .+..+..++.||+.||.|||+++                ||||||||+|||++.+| .+||
T Consensus       133 ~gg~L~~~l~~~-~~l---~e~~~~~~~~qi~~aL~ylH~~~----------------IiHRDlKp~NILl~~~g~~vKl  192 (336)
T 4g3f_A          133 EGGSLGQLIKQM-GCL---PEDRALYYLGQALEGLEYLHTRR----------------ILHGDVKADNVLLSSDGSRAAL  192 (336)
T ss_dssp             TTCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHTTT----------------EECSCCCGGGEEECTTSCCEEE
T ss_pred             CCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ceecccCHHHEEEeCCCCEEEE
Confidence            998 54443322 234   44556677789999999999999                99999999999999998 5999


Q ss_pred             EecccccccCCCC-------CCccccCccccccccc-cccCCc-ceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcc
Q psy6542         170 SDLGLACDFSKKK-------PHASVESDCILHGYIK-KLGGPF-VSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMD  237 (334)
Q Consensus       170 ~DFGla~~~~~~~-------~~~~~~t~~~~~~~v~-~~~~~~-~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~  237 (334)
                      +|||+|+.+....       ....+||+.||+||+. ...|+. +|+|+   ++|++++ +.+||.+.+.......+...
T Consensus       193 ~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemlt-G~~Pf~~~~~~~~~~~i~~~  271 (336)
T 4g3f_A          193 CDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLN-GCHPWTQYFRGPLCLKIASE  271 (336)
T ss_dssp             CCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSSTTTCCSCCHHHHHHS
T ss_pred             eeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHH-CcCCCCCCCHHHHHHHHHcC
Confidence            9999999765432       2335799999999985 344554 45555   5566655 66788766533222211111


Q ss_pred             cccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         238 QIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                      ..                        ...     ...+.+++.+.+  ++..++..+|..|+ +.++++++.+..
T Consensus       272 ~~------------------------~~~-----~~~~~~s~~~~~--li~~~L~~dP~~R~sa~el~~~l~~~l  315 (336)
T 4g3f_A          272 PP------------------------PIR-----EIPPSCAPLTAQ--AIQEGLRKEPVHRASAMELRRKVGKAL  315 (336)
T ss_dssp             CC------------------------GGG-----GSCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CC------------------------Cch-----hcCccCCHHHHH--HHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence            10                        000     011233344444  77788888888888 888888877653

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=8.4e-42  Score=313.17  Aligned_cols=227  Identities=17%  Similarity=0.190  Sum_probs=164.3

Q ss_pred             CCCceEEEecee---CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSL---KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~---~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +|+.+.||+|++   ..+++.||||++++..........+.+|+++|+.++||||        |++++++.+++.+||||
T Consensus        34 ~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnI--------v~l~~~~~~~~~~~ivm  105 (304)
T 3ubd_A           34 QGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFI--------VKLHYAFQTEGKLYLIL  105 (304)
T ss_dssp             CGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTE--------ECEEEEEEETTEEEEEE
T ss_pred             cCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCC--------CeEEEEEEECCEEEEEE
Confidence            578889999987   4578999999998765433334567889999999999999        99999999999999999


Q ss_pred             EccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          89 VRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        89 Ey~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+|| + +.+...  ..+   .+..+..++.||+.||.|||+++                |+||||||+|||++.+|.
T Consensus       106 Ey~~gg~L~~~l~~~--~~l---~e~~~~~~~~qi~~aL~ylH~~~----------------IiHRDlKp~NILl~~~g~  164 (304)
T 3ubd_A          106 DFLRGGDLFTRLSKE--VMF---TEEDVKFYLAELALALDHLHSLG----------------IIYRDLKPENILLDEEGH  164 (304)
T ss_dssp             CCCTTCEEHHHHHHH--CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSSCCGGGEEECTTSC
T ss_pred             EcCCCCCHHHHHHhc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CcCCCCCHHHeEEcCCCC
Confidence            999998 4 444322  234   44455666779999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCC--CCCccccCccccccccc-cccCCcc-eeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccc
Q psy6542         167 VRISDLGLACDFSKK--KPHASVESDCILHGYIK-KLGGPFV-SAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQI  239 (334)
Q Consensus       167 vkl~DFGla~~~~~~--~~~~~~~t~~~~~~~v~-~~~~~~~-~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  239 (334)
                      +||+|||+|+.....  ...+.+||+.||+||+. ..+|+.+ |+|+   ++|++++ +.+||.+.+.......+....+
T Consensus       165 vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemlt-G~~PF~~~~~~~~~~~i~~~~~  243 (304)
T 3ubd_A          165 IKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLT-GTLPFQGKDRKETMTMILKAKL  243 (304)
T ss_dssp             EEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCC
T ss_pred             EEecccccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHh-CCCCCCCcCHHHHHHHHHcCCC
Confidence            999999999865433  34567899999999985 3445554 5555   5666655 6778987764433333333332


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                       ..+...+ ....+.+...+..||..|+++.
T Consensus       244 -~~p~~~s-~~~~~li~~~L~~dP~~R~ta~  272 (304)
T 3ubd_A          244 -GMPQFLS-PEAQSLLRMLFKRNPANRLGAG  272 (304)
T ss_dssp             -CCCTTSC-HHHHHHHHHHTCSSGGGSTTCS
T ss_pred             -CCCCcCC-HHHHHHHHHHcccCHHHCCCCC
Confidence             2333322 2455677777788999998864

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.3e-40  Score=313.08  Aligned_cols=189  Identities=17%  Similarity=0.173  Sum_probs=148.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec------CCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE------PNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~------~~~~~   85 (334)
                      +|+.+.||+|.++.||+.||||++++........+.+.+|+++|+.++||||        |++++++..      .+.+|
T Consensus        64 ~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnI--------v~l~~~~~~~~~~~~~~~~~  135 (398)
T 4b99_A           64 NGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNI--------IAIKDILRPTVPYGEFKSVY  135 (398)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTB--------CCEEEECCCSSCTTTCCCEE
T ss_pred             cccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCc--------ceEeeeeecccccccCCEEE
Confidence            5788899999999999999999998776655566778899999999999999        999999763      36799


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      ||||||+|++..++... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|
T Consensus       136 ivmE~~~g~L~~~i~~~-~~l---~~~~~~~~~~qil~al~ylH~~~----------------iiHRDlKP~NIl~~~~~  195 (398)
T 4b99_A          136 VVLDLMESDLHQIIHSS-QPL---TLEHVRYFLYQLLRGLKYMHSAQ----------------VIHRDLKPSNLLVNENC  195 (398)
T ss_dssp             EEEECCSEEHHHHHTSS-SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCCGGGEEECTTC
T ss_pred             EEEeCCCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCc----------------CcCCCcCccccccCCCC
Confidence            99999998854433322 234   44455667779999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCC------CCCccccCcccccccccc--ccCCc-ceeeh--hHHHHHcCCCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKK------KPHASVESDCILHGYIKK--LGGPF-VSAWQ--TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~------~~~~~~~t~~~~~~~v~~--~~~~~-~~~w~--~~~~~l~~~~~~~~~~~~~  228 (334)
                      .+||+|||+|+.+...      ...+.+||+.|++||+..  .+|+. .|+|+  |+++.|.++.+||.+.+..
T Consensus       196 ~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~  269 (398)
T 4b99_A          196 ELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYV  269 (398)
T ss_dssp             CEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH
T ss_pred             CEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHH
Confidence            9999999999876432      234578999999999842  34444 56666  4444445567789887643

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=9.2e-40  Score=299.57  Aligned_cols=189  Identities=14%  Similarity=0.070  Sum_probs=146.9

Q ss_pred             CCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +|+.+.||+|...     .+|+.||||+++...  ....+.|.+|+++|++++||||        |++++++.+++.+||
T Consensus        23 ~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~--~~~~~~f~~E~~il~~l~HpnI--------V~l~g~~~~~~~~~l   92 (299)
T 4asz_A           23 EGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS--DNARKDFHREAELLTNLQHEHI--------VKFYGVCVEGDPLIM   92 (299)
T ss_dssp             C--CCCEEEEEECSCC----CEEEEEEEECSCC--HHHHHHHHHHHHHHTTCCCTTB--------CCEEEEECSSSSEEE
T ss_pred             eCCCcEEEEEEECCcccCCCCEEEEEEEeCCCC--hHHHHHHHHHHHHHHhCCCCCC--------ccEEEEEeeCCEEEE
Confidence            5888999999865     468899999998543  3345678999999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhh---------hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKI---------NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKP  156 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~---------~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp  156 (334)
                      |||||+|| +..++....         ...........+.++.||+.||.|||+++                |+||||||
T Consensus        93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~----------------iiHRDlKp  156 (299)
T 4asz_A           93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH----------------FVHRDLAT  156 (299)
T ss_dssp             EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSG
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------cccCccCH
Confidence            99999998 443333211         01122355667788899999999999999                99999999


Q ss_pred             CceeeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         157 ANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       157 ~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||+++++.+||+|||+|+......    .....||+.||+||+.. .. +.++|+||   ++||+++.+.+||.+.+
T Consensus       157 ~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~  235 (299)
T 4asz_A          157 RNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS  235 (299)
T ss_dssp             GGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred             hhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999998664443    22346899999999853 33 44666677   77888877788886644

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=297.42  Aligned_cols=239  Identities=13%  Similarity=0.062  Sum_probs=166.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|..+.   .||||+++.........+.|.+|+++|++++||||        |++++++.+ +.+|||||||
T Consensus        46 ~G~fG~Vy~~~~~~---~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNI--------V~l~g~~~~-~~~~iVmEy~  113 (307)
T 3omv_A           46 SGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNI--------LLFMGYMTK-DNLAIVTQWC  113 (307)
T ss_dssp             CCSSSEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTB--------CCEEEEECS-SSCEEEEECC
T ss_pred             eCCCcEEEEEEECC---cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCE--------eeEEEEEEC-CeEEEEEEcC
Confidence            57788999998654   59999998766666666789999999999999999        999998864 5689999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|| +..++......+   .....+.++.||+.||.|||+++                ||||||||+|||+++++.+||+
T Consensus       114 ~gGsL~~~l~~~~~~l---~~~~~~~i~~qia~gL~yLH~~~----------------IiHRDlKp~NILl~~~~~~Ki~  174 (307)
T 3omv_A          114 EGSSLYKHLHVQETKF---QMFQLIDIARQTAQGMDYLHAKN----------------IIHRDMKSNNIFLHEGLTVKIG  174 (307)
T ss_dssp             SSCBHHHHHHTSCCCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCSCCCSSSEEEETTEEEEEC
T ss_pred             CCCCHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccCCccCHHHEEECCCCcEEEe
Confidence            998 543333222233   45556778889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC----CCccccCccccccccccc----cCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         171 DLGLACDFSKKK----PHASVESDCILHGYIKKL----GGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       171 DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~----~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      |||+|+......    ....+||+.||+||+...    .|+ ++|+||   ++||+++ +..||.+.+..   ..+    
T Consensus       175 DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Ellt-g~~Pf~~~~~~---~~~----  246 (307)
T 3omv_A          175 DFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNR---DQI----  246 (307)
T ss_dssp             CCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHH-SSCTTTTCCCH---HHH----
T ss_pred             eccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHH-CCCCCCCCChH---HHH----
Confidence            999998664322    345689999999998531    244 567777   7777776 66687554321   000    


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                   ...+... ...|..  .   ...+.+++.+.+  +...|...+|..|| ..+++++++..
T Consensus       247 -------------~~~~~~~-~~~p~~--~---~~~~~~~~~l~~--li~~cl~~dP~~RPs~~ei~~~Le~l  298 (307)
T 3omv_A          247 -------------IFMVGRG-YASPDL--S---KLYKNCPKAMKR--LVADCVKKVKEERPLFPQILSSIELL  298 (307)
T ss_dssp             -------------HHHHHTT-CCCCCS--T---TSCTTSCHHHHH--HHHHHTCSSSTTSCCHHHHHHHHHHH
T ss_pred             -------------HHHHhcC-CCCCCc--c---cccccchHHHHH--HHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence                         0000000 011100  0   012334445555  66777777888888 77787777554

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=302.31  Aligned_cols=240  Identities=11%  Similarity=0.043  Sum_probs=166.0

Q ss_pred             CCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +|+.+.||+|..+     .+++.||||+++...  ....+.|.+|+++|++++||||        |++++++.+++.+||
T Consensus        51 ~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~--~~~~~~f~~E~~il~~l~HpnI--------V~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           51 EGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS--ESARQDFQREAELLTMLQHQHI--------VRFFGVCTEGRPLLM  120 (329)
T ss_dssp             ECSSEEEEEEEESSSCC---CEEEEEEEESCCS--HHHHHHHHHHHHHHTTCCCTTB--------CCEEEEECSSSSEEE
T ss_pred             cCCCcEEEEEEECCcccCCCCeEEEEEEECcCC--HHHHHHHHHHHHHHHhCCCCCC--------CcEEEEEEECCEEEE
Confidence            5788999999754     578999999998543  3345678999999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhh-----------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCC
Q psy6542          87 IGVRQSGP-KDQISRSKIN-----------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDL  154 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~-----------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDl  154 (334)
                      |||||+|| +..+......           ..........+.++.||+.||.|||+++                ||||||
T Consensus       121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~----------------iiHRDL  184 (329)
T 4aoj_A          121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH----------------FVHRDL  184 (329)
T ss_dssp             EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCC
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCC----------------eecccc
Confidence            99999998 5443332110           0112355667788899999999999999                999999


Q ss_pred             CCCceeeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCC
Q psy6542         155 KPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       155 Kp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ||+|||+++++.+||+|||+|+......    .....||+.||+||+.. ..| ..+|+|+   ++||+++.+..||.+.
T Consensus       185 Kp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~  264 (329)
T 4aoj_A          185 ATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQL  264 (329)
T ss_dssp             CGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSS
T ss_pred             cHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999764432    23456899999999843 334 4566666   7788887678887654


Q ss_pred             CCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHH
Q psy6542         226 SGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELL  304 (334)
Q Consensus       226 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL  304 (334)
                      +....                     ...+...  .    ++    +..+.+++++.+  +...|...+|..|| +.+++
T Consensus       265 ~~~~~---------------------~~~i~~g--~----~~----~~p~~~~~~~~~--li~~cl~~dP~~RPs~~ei~  311 (329)
T 4aoj_A          265 SNTEA---------------------IDCITQG--R----EL----ERPRACPPEVYA--IMRGCWQREPQQRHSIKDVH  311 (329)
T ss_dssp             CHHHH---------------------HHHHHHT--C----CC----CCCTTCCHHHHH--HHHHHCCSSTTTSCCHHHHH
T ss_pred             CHHHH---------------------HHHHHcC--C----CC----CCcccccHHHHH--HHHHHcCcChhHCcCHHHHH
Confidence            31100                     0111110  0    01    122345566666  66666677777888 77777


Q ss_pred             HHHHHH
Q psy6542         305 GSMARK  310 (334)
Q Consensus       305 ~~l~~~  310 (334)
                      +.|+..
T Consensus       312 ~~L~~l  317 (329)
T 4aoj_A          312 ARLQAL  317 (329)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666553

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=2.5e-39  Score=296.90  Aligned_cols=179  Identities=17%  Similarity=0.136  Sum_probs=134.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC---------
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN---------   82 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~---------   82 (334)
                      +|+.+.||+|.++.+|+.||||+++.... ....+.+.+|+++|++++||||        |++|+++.+.+         
T Consensus        15 ~G~fg~V~~a~~~~~~~~vAiK~i~~~~~-~~~~~~~~~E~~il~~l~HpnI--------V~~~~~~~~~~~~~~~~~~~   85 (299)
T 4g31_A           15 RGGFGVVFEAKNKVDDCNYAIKRIRLPNR-ELAREKVMREVKALAKLEHPGI--------VRYFNAWLEKNTTEKLQPSS   85 (299)
T ss_dssp             ECC--EEEEEEETTTCCEEEEEEEEECSS-HHHHHHHHHHHHHHTTCCCTTB--------CCEEEEEEEEC---------
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEeccCC-HHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEEecCccccccccC
Confidence            58889999999999999999999986553 3345678899999999999999        99999987543         


Q ss_pred             ---eEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCc
Q psy6542          83 ---SHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPAN  158 (334)
Q Consensus        83 ---~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~N  158 (334)
                         .+|||||||+|| +..+.... ....+.....++.++.||+.||+|||+++                |+||||||+|
T Consensus        86 ~~~~l~ivmE~~~gg~L~~~l~~~-~~~~~~~~~~~~~i~~qi~~al~ylH~~~----------------IiHRDlKp~N  148 (299)
T 4g31_A           86 PKVYLYIQMQLCRKENLKDWMNGR-CTIEERERSVCLHIFLQIAEAVEFLHSKG----------------LMHRDLKPSN  148 (299)
T ss_dssp             -CEEEEEEEECCCSCCHHHHHHTC-CSGGGSCHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGG
T ss_pred             CCcEEEEEEecCCCCcHHHHHHhc-CCCChhHHHHHHHHHHHHHHHHHHHHHCc----------------CccccCcHHH
Confidence               479999999998 44433322 23334345556778889999999999999                9999999999


Q ss_pred             eeeCCCCCEEEEecccccccCCCCC--------------CccccCcccccccccc-ccCC-cceeeh---hHHHHHc
Q psy6542         159 ILLDEHGHVRISDLGLACDFSKKKP--------------HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLF  216 (334)
Q Consensus       159 iLl~~~~~vkl~DFGla~~~~~~~~--------------~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~  216 (334)
                      ||++.+|.+||+|||+|+.+.....              .+.+||+.||+||+.. ..|+ ++|+|+   ++|++++
T Consensus       149 ILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~  225 (299)
T 4g31_A          149 IFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY  225 (299)
T ss_dssp             EEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS
T ss_pred             eEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc
Confidence            9999999999999999997654321              2357999999999853 3454 555566   7778774

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=2e-39  Score=298.60  Aligned_cols=240  Identities=13%  Similarity=-0.002  Sum_probs=171.3

Q ss_pred             CCCceEEEecee-----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSL-----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~-----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +|+.+.||+|..     ..+++.||||.++.... ....+.|.+|+.+|++++||||        |++++++.+++.+||
T Consensus        36 ~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~-~~~~~~f~~E~~il~~l~HpNI--------V~l~g~~~~~~~~~l  106 (308)
T 4gt4_A           36 EDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE-GPLREEFRHEAMLRARLQHPNV--------VCLLGVVTKDQPLSM  106 (308)
T ss_dssp             ECSSCEEEEEEEC-------CEEEEEEECCC-CC-C-CHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCEE
T ss_pred             cCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC-hHHHHHHHHHHHHHHhCCCCCC--------CCcceEEEECCEEEE
Confidence            578889999985     35788999999986543 2345678899999999999999        999999999999999


Q ss_pred             EEEccCCC-hh-HHhhhhhh-----------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeC
Q psy6542          87 IGVRQSGP-KD-QISRSKIN-----------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRD  153 (334)
Q Consensus        87 vmEy~~g~-l~-~l~~~~~~-----------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrD  153 (334)
                      |||||+|| +. ++......           ..........+.++.||+.||.|||+++                |||||
T Consensus       107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~----------------iiHRD  170 (308)
T 4gt4_A          107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH----------------VVHKD  170 (308)
T ss_dssp             EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT----------------CCCSC
T ss_pred             EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC----------------CCCCC
Confidence            99999998 43 44322100           0112345566788889999999999999                99999


Q ss_pred             CCCCceeeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         154 LKPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       154 lKp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||+|||+++++.+||+|||+|+......    .....||+.||+||+.. .. +..+|+||   ++||+++.+..||.+
T Consensus       171 LK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~  250 (308)
T 4gt4_A          171 LATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG  250 (308)
T ss_dssp             CSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred             ccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999998664332    23457899999999843 33 44666677   888888777888765


Q ss_pred             CCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHH
Q psy6542         225 ESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQEL  303 (334)
Q Consensus       225 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~l  303 (334)
                      .+....                         ...+...  .++    +..+.+++.+.+  +...|...+|..|| ..++
T Consensus       251 ~~~~~~-------------------------~~~i~~~--~~~----~~p~~~~~~~~~--li~~C~~~dP~~RPs~~ei  297 (308)
T 4gt4_A          251 YSNQDV-------------------------VEMIRNR--QVL----PCPDDCPAWVYA--LMIECWNEFPSRRPRFKDI  297 (308)
T ss_dssp             CCHHHH-------------------------HHHHHTT--CCC----CCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHH
T ss_pred             CCHHHH-------------------------HHHHHcC--CCC----CCcccchHHHHH--HHHHHcCCChhHCcCHHHH
Confidence            442110                         1111110  001    122345555666  55566667778888 7788


Q ss_pred             HHHHHH
Q psy6542         304 LGSMAR  309 (334)
Q Consensus       304 L~~l~~  309 (334)
                      +++|+.
T Consensus       298 ~~~L~a  303 (308)
T 4gt4_A          298 HSRLRA  303 (308)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            887764

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1.7e-38  Score=316.33  Aligned_cols=228  Identities=24%  Similarity=0.249  Sum_probs=172.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc----chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH----ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~----~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +|+.++||+|.++.||+.||||++++...    ..........++++++.++||||        |+++++|++.+.+|||
T Consensus       199 ~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~I--------V~l~~~f~~~~~lylV  270 (689)
T 3v5w_A          199 RGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFI--------VCMSYAFHTPDKLSFI  270 (689)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTB--------CCEEEEEECSSEEEEE
T ss_pred             cccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCE--------eEEEEEEEECCEEEEE
Confidence            58899999999999999999999986532    11112222345677778899999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||+|| +..++.. ...+++   ..+..++.||+.||.|||+++                ||||||||+|||++.+|+
T Consensus       271 mEy~~GGdL~~~l~~-~~~l~E---~~a~~y~~qIl~aL~yLH~~g----------------IiHRDLKPeNILld~~G~  330 (689)
T 3v5w_A          271 LDLMNGGDLHYHLSQ-HGVFSE---ADMRFYAAEIILGLEHMHNRF----------------VVYRDLKPANILLDEHGH  330 (689)
T ss_dssp             ECCCCSCBHHHHHHH-HCCCCH---HHHHHHHHHHHHHHHHHHTTT----------------EECCCCSGGGEEECTTSC
T ss_pred             EecCCCCcHHHHHHh-cCCCCH---HHHHHHHHHHHHHHHHHHHCC----------------ccccCCchHHeEEeCCCC
Confidence            9999998 4333232 234544   444556679999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCCCccccCcccccccccc--ccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchh--ccc
Q psy6542         167 VRISDLGLACDFSKKKPHASVESDCILHGYIKK--LGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIF--MDQ  238 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~--~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~--~~~  238 (334)
                      +||+|||+|+.+......+.+||+.||+||+..  .+|+.+.|||    ++|+|+ ++.+||.+.+.....++..  ...
T Consensus       331 vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmL-tG~~PF~~~~~~~~~~i~~~i~~~  409 (689)
T 3v5w_A          331 VRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL-RGHSPFRQHKTKDKHEIDRMTLTM  409 (689)
T ss_dssp             EEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHH-HSSCTTCGGGCCCHHHHHHHHHHC
T ss_pred             EEecccceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHH-hCCCCCCCCChHHHHHHHHhhcCC
Confidence            999999999998888888899999999999863  4577777777    555554 4677887765433222211  111


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      ....+..++ ....+.+...+.+||..|+++
T Consensus       410 ~~~~p~~~S-~~a~dLI~~lL~~dP~~Rl~~  439 (689)
T 3v5w_A          410 AVELPDSFS-PELRSLLEGLLQRDVNRRLGC  439 (689)
T ss_dssp             CCCCCTTSC-HHHHHHHHHHTCSCGGGCTTC
T ss_pred             CCCCCccCC-HHHHHHHHHHccCCHhHCCCC
Confidence            122333333 245677888888999999986

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=9.2e-37  Score=285.66  Aligned_cols=242  Identities=17%  Similarity=0.049  Sum_probs=170.7

Q ss_pred             CCCceEEEeceeCCCC-----CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCC-CCcccccccceeeEEEEeec-CCeE
Q psy6542          12 RVSKWRVKPPSLKPLG-----FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRN-EPFKKCVLLFKMNLYKVTSE-PNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~-----~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h-~~i~~~~~~~~v~~~~~~~~-~~~~   84 (334)
                      +|+++.||+|....++     +.||||.++...... ..+.+.+|+++|++++| |||        |++++++.+ ++.+
T Consensus        74 ~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~-~~~~~~~E~~il~~l~hhpnI--------V~l~g~~~~~~~~~  144 (353)
T 4ase_A           74 RGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS-EHRALMSELKILIHIGHHLNV--------VNLLGACTKPGGPL  144 (353)
T ss_dssp             ECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHH-HHHHHHHHHHHHHHHCCCTTB--------CCEEEEECCTTSCC
T ss_pred             cCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChH-HHHHHHHHHHHHHHcCCCCcE--------EEEEEEEEecCCEE
Confidence            5788899999876544     679999998655433 34578899999999976 899        999999875 5679


Q ss_pred             EEEEEccCCC-hhHHhhhhhhh------------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEe
Q psy6542          85 YIIGVRQSGP-KDQISRSKINR------------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHF  151 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~------------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiH  151 (334)
                      |||||||+|| +..++......            .........+.++.||+.||.|||+++                |||
T Consensus       145 ~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~----------------iiH  208 (353)
T 4ase_A          145 MVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK----------------CIH  208 (353)
T ss_dssp             EEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT----------------CCC
T ss_pred             EEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCC----------------eec
Confidence            9999999999 44433322111            011345666788889999999999999                999


Q ss_pred             eCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCC
Q psy6542         152 RDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       152 rDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~  222 (334)
                      |||||+|||+++++.+||+|||+|+.+.....    ....||+.||+||+. ...|+ .+|+||   ++||+++.+..||
T Consensus       209 RDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf  288 (353)
T 4ase_A          209 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY  288 (353)
T ss_dssp             SCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred             CccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCC
Confidence            99999999999999999999999997755432    345678999999984 33344 566666   7788877678888


Q ss_pred             CCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hH
Q psy6542         223 HPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQ  301 (334)
Q Consensus       223 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~  301 (334)
                      .+.+..   +.                     +...+....  ++.    ..+.+++++.+  +...|...+|..|| +.
T Consensus       289 ~~~~~~---~~---------------------~~~~i~~g~--~~~----~p~~~~~~~~~--li~~c~~~dP~~RPt~~  336 (353)
T 4ase_A          289 PGVKID---EE---------------------FCRRLKEGT--RMR----APDYTTPEMYQ--TMLDCWHGEPSQRPTFS  336 (353)
T ss_dssp             TTCCCS---HH---------------------HHHHHHHTC--CCC----CCTTCCHHHHH--HHHHHTCSSGGGSCCHH
T ss_pred             CCCCHH---HH---------------------HHHHHHcCC--CCC----CCccCCHHHHH--HHHHHcCcChhHCcCHH
Confidence            664421   10                     000110000  011    12334555666  55556667777788 77


Q ss_pred             HHHHHHHHH
Q psy6542         302 ELLGSMARK  310 (334)
Q Consensus       302 ~lL~~l~~~  310 (334)
                      +++++|.+.
T Consensus       337 eil~~L~~l  345 (353)
T 4ase_A          337 ELVEHLGNL  345 (353)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887777653

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=5.8e-36  Score=297.32  Aligned_cols=227  Identities=14%  Similarity=0.113  Sum_probs=170.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||++......  ..+.+.+|+++|+.++||||        |+++++|.+++.+|||||||
T Consensus       167 ~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~--~~~~~~~Ei~il~~l~hpnI--------v~l~~~~~~~~~~~iv~E~~  236 (573)
T 3uto_A          167 TGAFGVVHRVTERATGNNFAAKFVMTPHES--DKETVRKEIQTMSVLRHPTL--------VNLHDAFEDDNEMVMIYEFM  236 (573)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEECCSHH--HHHHHHHHHHHHHHTCCTTB--------CCEEEEEECSSEEEEEEECC
T ss_pred             eccCeEEEEEEECCCCCEEEEEEEeccchh--hHHHHHHHHHHHHhCCCCCC--------CeEEEEEEECCEEEEEEeec
Confidence            467789999999999999999999865432  34567889999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC--CCE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH--GHV  167 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~--~~v  167 (334)
                      +|| + +++ ......+   .+..+..++.||+.||.|||+++                |+||||||+|||++.+  +.+
T Consensus       237 ~gg~L~~~i-~~~~~~l---~e~~~~~~~~qi~~al~ylH~~~----------------iiHRDlKp~Nill~~~~~~~v  296 (573)
T 3uto_A          237 SGGELFEKV-ADEHNKM---SEDEAVEYMRQVCKGLCHMHENN----------------YVHLDLKPENIMFTTKRSNEL  296 (573)
T ss_dssp             CCCBHHHHH-TCTTSCE---EHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEESSSSCCCE
T ss_pred             CCCcHHHHH-HHhCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeeccCChhhccccCCCCCCE
Confidence            998 4 344 3222344   34445566779999999999999                9999999999999865  899


Q ss_pred             EEEecccccccCCCCC-CccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         168 RISDLGLACDFSKKKP-HASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       168 kl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      ||+|||+|+.+..... ...+||+.||+||+. ...|....|||    ++|++++ +.+||.+.+.......+...... 
T Consensus       297 Kl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~-G~~Pf~~~~~~~~~~~i~~~~~~-  374 (573)
T 3uto_A          297 KLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLS-GLSPFGGENDDETLRNVKSCDWN-  374 (573)
T ss_dssp             EECCCSSCEECCTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHH-SCCSSCCSSHHHHHHHHHTTCCC-
T ss_pred             EEeeccceeEccCCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCcCHHHHHHHHHhCCCC-
Confidence            9999999998766543 456899999999984 44466555555    5566554 67788877654333333333221 


Q ss_pred             ccccc---ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDL---ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~---~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+...   .+....+.+..++..||..|++..
T Consensus       375 ~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~  406 (573)
T 3uto_A          375 MDDSAFSGISEDGKDFIRKLLLADPNTRMTIH  406 (573)
T ss_dssp             CCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CCcccccCCCHHHHHHHHHHccCChhHCcCHH
Confidence            11111   112455667777788999998754

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=2e-36  Score=278.25  Aligned_cols=185  Identities=15%  Similarity=0.095  Sum_probs=133.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC----eEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN----SHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~----~~~iv   87 (334)
                      +|+.+.||+|..  +|+.||||+++....   ....+..|+.++.+++||||        |++++++.+++    .+|||
T Consensus        13 ~G~fG~Vy~~~~--~g~~VAvK~l~~~~~---~~~~~e~Ei~~~~~l~HpNI--------v~l~g~~~~~~~~~~~~~lV   79 (303)
T 3hmm_A           13 KGRFGEVWRGKW--RGEEVAVKIFSSREE---RSWFREAEIYQTVMLRHENI--------LGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             ECSSSEEEEEEE--TTEEEEEEEECGGGH---HHHHHHHHHHTSTTCCCTTB--------CCEEEEEEEECSSSEEEEEE
T ss_pred             eCCCeEEEEEEE--CCEEEEEEEECccch---hhHHHHHHHHHHhcCCCCCC--------CcEEEEEEecCCCceEEEEE
Confidence            578889999987  589999999975322   12223346666678999999        99999998653    58999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||+|| +..+....  .+   .....+.++.|++.||.|||++.        ..+...|+|+||||||+|||+++++.
T Consensus        80 ~Ey~~~gsL~~~l~~~--~l---~~~~~~~i~~~ia~gl~ylH~~~--------~~~~~~~~IiHRDlKp~NILl~~~~~  146 (303)
T 3hmm_A           80 SDYHEHGSLFDYLNRY--TV---TVEGMIKLALSTASGLAHLHMEI--------VGTQGKPAIAHRDLKSKNILVKKNGT  146 (303)
T ss_dssp             EECCTTCBHHHHHHHC--CB---CHHHHHHHHHHHHHHHHHHHCCB--------CSTTCBCCEECSCCCGGGEEECTTSC
T ss_pred             ecCCCCCcHHHHHHhC--CC---CHHHHHHHHHHHHHHHHHHHHhh--------hhccCCCCEeeccCCcccEEECCCCC
Confidence            9999988 44433322  22   44455677889999999999872        01122334999999999999999999


Q ss_pred             EEEEecccccccCCCCC------CccccCccccccccccc--------cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKP------HASVESDCILHGYIKKL--------GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~------~~~~~t~~~~~~~v~~~--------~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      +||+|||+|+.......      ...+||+.||+||+...        .+.++|+||   ++||++++ .+|+.
T Consensus       147 ~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg-~~~~~  219 (303)
T 3hmm_A          147 CCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARR-CSIGG  219 (303)
T ss_dssp             EEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHT-BCBTT
T ss_pred             EEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHC-CCCCC
Confidence            99999999987654432      23579999999998532        234678888   77777654 44443

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=3.5e-35  Score=276.15  Aligned_cols=179  Identities=14%  Similarity=0.075  Sum_probs=137.8

Q ss_pred             CCCceEEEeceeC---CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLK---PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~---~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +|+.+.||+|.++   .+++.||||.+.+...    ..++.+|+++|+.+ +||||        |+++++|.+++.+|||
T Consensus        31 ~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~----~~~~~~E~~~l~~~~~h~nI--------v~l~~~~~~~~~~~lv   98 (361)
T 4f9c_A           31 EGTFSSVYLATAQLQVGPEEKIALKHLIPTSH----PIRIAAELQCLTVAGGQDNV--------MGVKYCFRKNDHVVIA   98 (361)
T ss_dssp             ECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC----HHHHHHHHHHHHHTCSBTTB--------CCCSEEEEETTEEEEE
T ss_pred             cccCcEEEEEEEcccCCCCCEEEEEEEccccC----HHHHHHHHHHHHHhcCCCCC--------ceEEEEEEECCEEEEE
Confidence            5788999999875   5788999999976543    23466799999998 69999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-C
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-G  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-~  165 (334)
                      ||||+|+ +..+.    +.++   ...+..++.||+.||.|||+++                |+||||||+|||++.+ +
T Consensus        99 mE~~~g~~L~~~~----~~l~---~~~~~~~~~qll~al~ylH~~g----------------IiHRDiKPeNiLl~~~~~  155 (361)
T 4f9c_A           99 MPYLEHESFLDIL----NSLS---FQEVREYMLNLFKALKRIHQFG----------------IVHRDVKPSNFLYNRRLK  155 (361)
T ss_dssp             EECCCCCCHHHHH----TTCC---HHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEETTTT
T ss_pred             EeCCCcccHHHHH----cCCC---HHHHHHHHHHHHHHHHHHHHCC----------------eEeCcCCHHHeEEeCCCC
Confidence            9999988 43332    2343   3445566779999999999999                9999999999999877 7


Q ss_pred             CEEEEecccccccCCCC------------------------------CCccccCcccccccccc--ccCCc-ceeeh---
Q psy6542         166 HVRISDLGLACDFSKKK------------------------------PHASVESDCILHGYIKK--LGGPF-VSAWQ---  209 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~------------------------------~~~~~~t~~~~~~~v~~--~~~~~-~~~w~---  209 (334)
                      .+||+|||+|+......                              ..+.+||+.|++||+..  ..|+. .|+|+   
T Consensus       156 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~  235 (361)
T 4f9c_A          156 KYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGV  235 (361)
T ss_dssp             EEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHH
T ss_pred             eEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHH
Confidence            99999999998654321                              12357999999999853  23555 46666   


Q ss_pred             hHHHHHcCCCCCCCCCC
Q psy6542         210 TRYAKLFPNRLELHPES  226 (334)
Q Consensus       210 ~~~~~l~~~~~~~~~~~  226 (334)
                      ++|+++ ++.+||++.+
T Consensus       236 il~ell-~G~~Pf~~~~  251 (361)
T 4f9c_A          236 IFLSLL-SGRYPFYKAS  251 (361)
T ss_dssp             HHHHHH-HTCSSSSCCS
T ss_pred             HHHHHH-HCCCCCCCCC
Confidence            555554 5666776654

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=2.6e-33  Score=254.97  Aligned_cols=187  Identities=16%  Similarity=0.096  Sum_probs=150.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||||+++...........+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        12 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~   83 (292)
T 3o0g_A           12 EGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI--------VRLHDVLHSDKKLTLVFEFC   83 (292)
T ss_dssp             ECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             CCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCE--------eeEEeEEEeCCEEEEEEecC
Confidence            4778899999999999999999999777655566678889999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      +|++..........+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.+||+|
T Consensus        84 ~~~l~~~~~~~~~~l---~~~~~~~~~~ql~~~l~~lH~~~----------------ivH~dikp~Nil~~~~~~~kl~D  144 (292)
T 3o0g_A           84 DQDLKKYFDSCNGDL---DPEIVKSFLFQLLKGLGFCHSRN----------------VLHRDLKPQNLLINRNGELKLAN  144 (292)
T ss_dssp             SEEHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTSCEEECC
T ss_pred             CCCHHHHHHhCCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEEcCCCCEEEee
Confidence            998433323222233   44556677789999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC--CCccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         172 LGLACDFSKKK--PHASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       172 FGla~~~~~~~--~~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ||+++......  .....||+.|++||+..  . .+..+|+|+   ++|+++.++.++|.+.
T Consensus       145 fg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~  206 (292)
T 3o0g_A          145 FGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN  206 (292)
T ss_dssp             CTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS
T ss_pred             cccceecCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCC
Confidence            99998765443  23456799999999853  2 244566666   6667666766655444

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=4.6e-33  Score=258.52  Aligned_cols=227  Identities=18%  Similarity=0.192  Sum_probs=169.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+..+|+.||||++..........+.+.+|+++++.++||||        +++++++.+.+.+|+||||+
T Consensus        25 ~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI--------v~l~~~~~~~~~~~lv~e~~   96 (328)
T 3fe3_A           25 KGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNI--------VKLFEVIETEKTLYLIMEYA   96 (328)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEECCC
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCE--------eeEEEEEEECCEEEEEEECC
Confidence            5778899999999999999999998776655566778899999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|+ + +.+...  ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.+||
T Consensus        97 ~~~~L~~~l~~~--~~l---~~~~~~~~~~qi~~al~~lH~~~----------------ivHrDlkp~NIll~~~~~~kl  155 (328)
T 3fe3_A           97 SGGEVFDYLVAH--GRM---KEKEARSKFRQIVSAVQYCHQKR----------------IVHRDLKAENLLLDADMNIKI  155 (328)
T ss_dssp             TTCBHHHHHHHH--CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTSCEEE
T ss_pred             CCCcHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeccCCCHHHEEEcCCCCEEE
Confidence            887 4 333222  233   44555677789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-CCccccCcccccccccc-cc-C-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDFSKKK-PHASVESDCILHGYIKK-LG-G-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~-~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||+++...... ....+||+.|++||+.. .. + +.+|+|+   ++|+++. +.+||.+.+.....+.+..... ..
T Consensus       156 ~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~i~~~~~-~~  233 (328)
T 3fe3_A          156 ADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVS-GSLPFDGQNLKELRERVLRGKY-RI  233 (328)
T ss_dssp             CSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCC-CC
T ss_pred             eeccCceecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCC-CC
Confidence            9999998765543 34567899999999853 22 2 4567777   5555554 6778877653322222222221 12


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +.... ......+...+..||..|.+..
T Consensus       234 p~~~s-~~~~~li~~~L~~dP~~R~t~~  260 (328)
T 3fe3_A          234 PFYMS-TDCENLLKRFLVLNPIKRGTLE  260 (328)
T ss_dssp             CTTSC-HHHHHHHHHHCCSSTTTSCCHH
T ss_pred             CCCCC-HHHHHHHHHHCCCChhHCcCHH
Confidence            22222 2334556666677888887643

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=5.4e-33  Score=259.05  Aligned_cols=227  Identities=16%  Similarity=0.145  Sum_probs=167.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.++||+|.++.+|+.||||++++... .......+.+|+++++.++||||        +++++++.+.+.+|+||||
T Consensus        15 ~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i--------v~l~~~~~~~~~~~lv~E~   86 (337)
T 1o6l_A           15 KGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFL--------TALKYAFQTHDRLCFVMEY   86 (337)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcC--------cceEEEEEeCCEEEEEEeC
Confidence            57889999999999999999999986432 22233467789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +...... ...+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+||
T Consensus        87 ~~gg~L~~~l~~-~~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDlkp~NIll~~~g~vkL  146 (337)
T 1o6l_A           87 ANGGELFFHLSR-ERVF---TEERARFYGAEIVSALEYLHSRD----------------VVYRDIKLENLMLDKDGHIKI  146 (337)
T ss_dssp             CTTCBHHHHHHH-HSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCCGGGEEECTTSCEEE
T ss_pred             CCCCcHHHHHHh-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCcCCHHHEEECCCCCEEE
Confidence            9998 4333222 1233   34455566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCC--CCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDFSKK--KPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~~~~--~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||+|+.....  .....+||+.|++||+. ...++.+.|||    ++|++++ +.+||.+.+.....+.+..... ..
T Consensus       147 ~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~Pf~~~~~~~~~~~i~~~~~-~~  224 (337)
T 1o6l_A          147 TDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHERLFELILMEEI-RF  224 (337)
T ss_dssp             CCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCC-CC
T ss_pred             eeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhc-CCCCCCCCCHHHHHHHHHcCCC-CC
Confidence            999999864332  34557899999999985 34455555555    5566655 5668876654333333333322 12


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      +.... ......+...+..||..|+++
T Consensus       225 p~~~s-~~~~~li~~lL~~dP~~R~g~  250 (337)
T 1o6l_A          225 PRTLS-PEAKSLLAGLLKKDPKQRLGG  250 (337)
T ss_dssp             CTTSC-HHHHHHHHHHTCSSTTTSTTC
T ss_pred             CCCCC-HHHHHHHHHHhhcCHHHhcCC
Confidence            32222 244566777778899999854

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=5.3e-33  Score=260.67  Aligned_cols=227  Identities=15%  Similarity=0.145  Sum_probs=166.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|.++.+|+.||||++++... .......+.+|..+++.+ +||||        +++++++.+.+.+|+|||
T Consensus        33 ~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~I--------v~l~~~~~~~~~~~lv~E  104 (353)
T 3txo_A           33 KGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFL--------TQLFCCFQTPDRLFFVME  104 (353)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTB--------CCEEEEEECSSEEEEEEE
T ss_pred             eCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCce--------eeEEEEEEeCCEEEEEEe
Confidence            57788999999999999999999986532 222344677899999988 69999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +...... ...+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+|
T Consensus       105 ~~~gg~L~~~l~~-~~~~---~~~~~~~~~~qi~~aL~~LH~~g----------------ivHrDlkp~NILl~~~g~ik  164 (353)
T 3txo_A          105 FVNGGDLMFHIQK-SRRF---DEARARFYAAEIISALMFLHDKG----------------IIYRDLKLDNVLLDHEGHCK  164 (353)
T ss_dssp             CCCSCBHHHHHHH-HSSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCCGGGEEECTTSCEE
T ss_pred             CCCCCcHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CcccCCCHHHEEECCCCCEE
Confidence            99998 4333222 2234   44455667779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCC--CCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKK--KPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~--~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+|+.....  .....+||+.|++||+. ...++.+.|||    ++|++++ +.+||.+.+.....+.+...... 
T Consensus       165 L~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-G~~Pf~~~~~~~~~~~i~~~~~~-  242 (353)
T 3txo_A          165 LADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLC-GHAPFEAENEDDLFEAILNDEVV-  242 (353)
T ss_dssp             ECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCC-
T ss_pred             EccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHh-CCCCCCCCCHHHHHHHHHcCCCC-
Confidence            9999999864333  34456899999999984 34456556665    5566655 67788777644444444433322 


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      .+... +......+...+..+|..|+++
T Consensus       243 ~p~~~-~~~~~~li~~lL~~dP~~R~~~  269 (353)
T 3txo_A          243 YPTWL-HEDATGILKSFMTKNPTMRLGS  269 (353)
T ss_dssp             CCTTS-CHHHHHHHHHHTCSSGGGSTTS
T ss_pred             CCCCC-CHHHHHHHHHHhhhCHHHccCC
Confidence            22222 2245667777778899999987

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=7.2e-33  Score=258.99  Aligned_cols=228  Identities=15%  Similarity=0.116  Sum_probs=168.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.++||+|.++.+|+.||||++++... .......+..|..+++.+ +||||        +++++++.+.+.+|+|||
T Consensus        27 ~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~i--------v~l~~~~~~~~~~~lv~E   98 (345)
T 1xjd_A           27 KGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFL--------THMFCTFQTKENLFFVME   98 (345)
T ss_dssp             ECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTB--------CCEEEEEECSSEEEEEEE
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCC--------CcEEEEEEeCCEEEEEEe
Confidence            57788999999999999999999986432 111234567799999876 99999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|| +..+.... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+|
T Consensus        99 ~~~gg~L~~~l~~~-~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDlkp~NIll~~~g~vk  158 (345)
T 1xjd_A           99 YLNGGDLMYHIQSC-HKF---DLSRATFYAAEIILGLQFLHSKG----------------IVYRDLKLDNILLDKDGHIK  158 (345)
T ss_dssp             CCTTCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCCGGGEEECTTSCEE
T ss_pred             CCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEeCCCChhhEEECCCCCEE
Confidence            99988 43333321 233   34445566779999999999999                99999999999999999999


Q ss_pred             EEecccccccCC--CCCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSK--KKPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~--~~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+|+....  ......+||+.|++||+. ...++.+.|||    ++|++++ +..||.+.+.....+.+..... .
T Consensus       159 L~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~Pf~~~~~~~~~~~i~~~~~-~  236 (345)
T 1xjd_A          159 IADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLI-GQSPFHGQDEEELFHSIRMDNP-F  236 (345)
T ss_dssp             ECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCC-C
T ss_pred             EeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhc-CCCCCCCCCHHHHHHHHHhCCC-C
Confidence            999999986533  334567899999999984 34456666666    5566655 6678877654333333333222 1


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.. .+......+...+..+|..|++..
T Consensus       237 ~p~~-~s~~~~~li~~lL~~dp~~R~~~~  264 (345)
T 1xjd_A          237 YPRW-LEKEAKDLLVKLFVREPEKRLGVR  264 (345)
T ss_dssp             CCTT-SCHHHHHHHHHHSCSSGGGSBTTB
T ss_pred             CCcc-cCHHHHHHHHHHhcCCHhHcCCCh
Confidence            2222 222455677777788999999875

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=260.12  Aligned_cols=228  Identities=17%  Similarity=0.173  Sum_probs=168.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.||+|.++.+|+.||||++.+... .....+.+.+|+++++.++||||        |++++++.+.+.+|+||||
T Consensus        25 ~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~I--------v~l~~~~~~~~~~~lv~e~   96 (384)
T 4fr4_A           25 KGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFL--------VNLWYSFQDEEDMFMVVDL   96 (384)
T ss_dssp             CCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCC--------CcEEEEEEeCCEEEEEEec
Confidence            57888999999999999999999986442 22234567789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +..+.... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+||
T Consensus        97 ~~gg~L~~~l~~~-~~l---~~~~~~~~~~qi~~aL~~LH~~g----------------ivHrDlkp~NIll~~~g~vkL  156 (384)
T 4fr4_A           97 LLGGDLRYHLQQN-VHF---KEETVKLFICELVMALDYLQNQR----------------IIHRDMKPDNILLDEHGHVHI  156 (384)
T ss_dssp             CTTEEHHHHHHTT-CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTSCEEE
T ss_pred             CCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ceeccCcHHHeEECCCCCEEE
Confidence            9998 54433322 233   44455667779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-CCccccCcccccccccc----ccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhc--cc
Q psy6542         170 SDLGLACDFSKKK-PHASVESDCILHGYIKK----LGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFM--DQ  238 (334)
Q Consensus       170 ~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~----~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~--~~  238 (334)
                      +|||+|+...... ....+||+.|++||+..    .+++...|||    ++|+++. +..||.+.+.....+.+..  ..
T Consensus       157 ~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~  235 (384)
T 4fr4_A          157 TDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLR-GRRPYHIRSSTSSKEIVHTFETT  235 (384)
T ss_dssp             CCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHH-SSCSSCCCTTSCHHHHHHHHHHC
T ss_pred             eccceeeeccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHh-CCCCCCCCCCccHHHHHHHHhhc
Confidence            9999999775543 45578999999999853    3356555655    5566655 6668876654433322211  11


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      ....+..+. ......+..++..+|..|+++
T Consensus       236 ~~~~p~~~s-~~~~~li~~lL~~dP~~R~s~  265 (384)
T 4fr4_A          236 VVTYPSAWS-QEMVSLLKKLLEPNPDQRFSQ  265 (384)
T ss_dssp             CCCCCTTSC-HHHHHHHHHHSCSSGGGSCCS
T ss_pred             ccCCCCcCC-HHHHHHHHHHhcCCHhHhccc
Confidence            122222222 234556777778899999874

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.98  E-value=4.1e-32  Score=258.27  Aligned_cols=228  Identities=15%  Similarity=0.168  Sum_probs=166.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.++||+|.++.+|+.||||++++... .......+.+|..++..+ +||||        +++++++.+.+.+|+|||
T Consensus        62 ~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~I--------v~l~~~~~~~~~~~lV~E  133 (396)
T 4dc2_A           62 RGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFL--------VGLHSCFQTESRLFFVIE  133 (396)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTB--------CCEEEEEECSSEEEEEEE
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCc--------CeeEEEEEECCEEEEEEE
Confidence            57888999999999999999999987644 333445677899999887 89999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|| +...... ...+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+|
T Consensus       134 ~~~gg~L~~~l~~-~~~l---~~~~~~~~~~qi~~aL~~LH~~g----------------ivHrDLKp~NILl~~~g~ik  193 (396)
T 4dc2_A          134 YVNGGDLMFHMQR-QRKL---PEEHARFYSAEISLALNYLHERG----------------IIYRDLKLDNVLLDSEGHIK  193 (396)
T ss_dssp             CCTTCBHHHHHHH-HSSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCCGGGEEECTTSCEE
T ss_pred             cCCCCcHHHHHHH-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EEeccCCHHHEEECCCCCEE
Confidence            99998 4333222 2234   34445566779999999999999                99999999999999999999


Q ss_pred             EEecccccccCC--CCCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCc---------cc
Q psy6542         169 ISDLGLACDFSK--KKPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSK---------PE  232 (334)
Q Consensus       169 l~DFGla~~~~~--~~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~---------~~  232 (334)
                      |+|||+|+....  ......+||+.|++||+. ...++.+.|||    ++|+++. +.+||.+......         .+
T Consensus       194 L~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~-G~~Pf~~~~~~~~~~~~~~~~~~~  272 (396)
T 4dc2_A          194 LTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA-GRSPFDIVGSSDNPDQNTEDYLFQ  272 (396)
T ss_dssp             ECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSTTTTC------CCHHHHHH
T ss_pred             EeecceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHh-CCCCCcccccccccchhhHHHHHH
Confidence            999999986332  234567899999999984 34566666666    5566655 6668865432211         11


Q ss_pred             chhcccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         233 LIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.... ...+..+. ....+.+...+..||..|+++.
T Consensus       273 ~i~~~~-~~~p~~~s-~~~~~li~~lL~~dP~~R~~~~  308 (396)
T 4dc2_A          273 VILEKQ-IRIPRSLS-VKAASVLKSFLNKDPKERLGCH  308 (396)
T ss_dssp             HHHHCC-CCCCTTSC-HHHHHHHHHHTCSCTTTSTTCS
T ss_pred             HHhccc-cCCCCcCC-HHHHHHHHHHhcCCHhHcCCCC
Confidence            121111 12332222 2455677777788999999863

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.98  E-value=1.3e-32  Score=254.32  Aligned_cols=227  Identities=16%  Similarity=0.137  Sum_probs=167.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.++||+|.++.+|+.||||++++... .....+.+.+|..+++.++||||        +++++++.+.+.+|+||||
T Consensus        16 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~I--------v~~~~~~~~~~~~~lv~e~   87 (318)
T 1fot_A           16 TGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFI--------IRMWGTFQDAQQIFMIMDY   87 (318)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCC--------ceEeEEEEeCCEEEEEEeC
Confidence            57888999999999999999999986432 11223466789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+||
T Consensus        88 ~~gg~L~~~l~~~-~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDlkp~NIll~~~g~~kL  147 (318)
T 1fot_A           88 IEGGELFSLLRKS-QRF---PNPVAKFYAAEVCLALEYLHSKD----------------IIYRDLKPENILLDKNGHIKI  147 (318)
T ss_dssp             CCSCBHHHHHHHT-SSC---CHHHHHHHHHHHHHHHHHHHTTT----------------EECCCCCGGGEEECTTSCEEE
T ss_pred             CCCCCHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCChheEEEcCCCCEEE
Confidence            9987 44333322 233   34445566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhccccccccc
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQ  244 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  244 (334)
                      +|||+++..... ....+||+.|++||+. ...++.+.|||    ++|+++. +..||.+.+.....+.+..... ..+.
T Consensus       148 ~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~i~~~~~-~~p~  224 (318)
T 1fot_A          148 TDFGFAKYVPDV-TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLA-GYTPFYDSNTMKTYEKILNAEL-RFPP  224 (318)
T ss_dssp             CCCSSCEECSSC-BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHHCCC-CCCT
T ss_pred             eecCcceecCCc-cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCC-CCCC
Confidence            999999876543 4456799999999984 34455555555    5556655 5668876653333333333322 1222


Q ss_pred             ccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         245 DLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       245 ~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+. ......+...+..||..|+++.
T Consensus       225 ~~~-~~~~~li~~lL~~dp~~R~~~~  249 (318)
T 1fot_A          225 FFN-EDVKDLLSRLITRDLSQRLGNL  249 (318)
T ss_dssp             TSC-HHHHHHHHHHTCSCTTTCTTSS
T ss_pred             CCC-HHHHHHHHHHhccCHHHcCCCc
Confidence            222 2445667777788999998653

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.98  E-value=1.1e-32  Score=263.58  Aligned_cols=229  Identities=15%  Similarity=0.101  Sum_probs=165.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.++||+|.++.+|+.||||++++... .......+.+|..++..++||||        +++++++.+.+.+|+||||
T Consensus        71 ~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~I--------v~l~~~~~~~~~~~lVmE~  142 (412)
T 2vd5_A           71 RGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWI--------TQLHFAFQDENYLYLVMEY  142 (412)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCe--------eeEEEEEeeCCEEEEEEcC
Confidence            57788999999999999999999986433 22234568889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +..+.......+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|++||
T Consensus       143 ~~gg~L~~~l~~~~~~l---~~~~~~~~~~qi~~aL~~LH~~g----------------iiHrDLKp~NILld~~g~vkL  203 (412)
T 2vd5_A          143 YVGGDLLTLLSKFGERI---PAEMARFYLAEIVMAIDSVHRLG----------------YVHRDIKPDNILLDRCGHIRL  203 (412)
T ss_dssp             CCSCBHHHHHHHHSSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTSCEEE
T ss_pred             CCCCcHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeecccCHHHeeecCCCCEEE
Confidence            9887 544433322234   34445566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC---CccccCcccccccccc--------ccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         170 SDLGLACDFSKKKP---HASVESDCILHGYIKK--------LGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       170 ~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~--------~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      +|||+|+.......   ...+||+.|++||+..        ..++.+.|||    ++|+++ ++.+||.+.+.......+
T Consensus       204 ~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyell-tG~~Pf~~~~~~~~~~~i  282 (412)
T 2vd5_A          204 ADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMF-YGQTPFYADSTAETYGKI  282 (412)
T ss_dssp             CCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHH-HSSCTTCCSSHHHHHHHH
T ss_pred             eechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHH-hCCCCCCCCCHHHHHHHH
Confidence            99999987755432   3468999999999854        2355556666    556665 566788776643333333


Q ss_pred             hccc-cccccc--ccccHhHHHHHHHhhccCchhhcCC
Q psy6542         235 FMDQ-IEEVSQ--DLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       235 ~~~~-~~~~~~--~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      .... ....+.  ...+....+.+...+. +|..|++.
T Consensus       283 ~~~~~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr  319 (412)
T 2vd5_A          283 VHYKEHLSLPLVDEGVPEEARDFIQRLLC-PPETRLGR  319 (412)
T ss_dssp             HTHHHHCCCC----CCCHHHHHHHHTTSS-CGGGCTTT
T ss_pred             HhcccCcCCCccccCCCHHHHHHHHHHcC-ChhhcCCC
Confidence            3211 111111  1122234445555555 88888753

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.98  E-value=1.8e-32  Score=256.71  Aligned_cols=226  Identities=17%  Similarity=0.134  Sum_probs=167.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||++++... .....+.+.+|+++++.++||||        +++++++.+++.+|+||||
T Consensus        51 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e~  122 (350)
T 1rdq_E           51 TGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFL--------VKLEFSFKDNSNLYMVMEY  122 (350)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             cCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEEcCCEEEEEEcC
Confidence            46778999999999999999999986432 22233467789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+||
T Consensus       123 ~~gg~L~~~l~~~-~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDlkp~NIll~~~g~~kL  182 (350)
T 1rdq_E          123 VAGGEMFSHLRRI-GRF---SEPHARFYAAQIVLTFEYLHSLD----------------LIYRDLKPENLLIDQQGYIQV  182 (350)
T ss_dssp             CTTCBHHHHHHHH-CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTSCEEE
T ss_pred             CCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccccCccceEEECCCCCEEE
Confidence            9887 43332322 233   44455667779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhccccccccc
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQ  244 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  244 (334)
                      +|||+++..... ....+||+.|++||+. ...++..+|||    ++|+++. +.+||.+.+.....+.+..... ..+.
T Consensus       183 ~DFg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~Pf~~~~~~~~~~~i~~~~~-~~p~  259 (350)
T 1rdq_E          183 TDFGFAKRVKGR-TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAA-GYPPFFADQPIQIYEKIVSGKV-RFPS  259 (350)
T ss_dssp             CCCTTCEECSSC-BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCC-CCCT
T ss_pred             cccccceeccCC-cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhh-CCCCCCCCCHHHHHHHHHcCCC-CCCC
Confidence            999999876544 3456799999999984 34455555555    5555555 6678876653333333333322 1222


Q ss_pred             ccccHhHHHHHHHhhccCchhhcCC
Q psy6542         245 DLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       245 ~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      .+. ......+...+..||..|+++
T Consensus       260 ~~~-~~~~~li~~lL~~dp~~R~~~  283 (350)
T 1rdq_E          260 HFS-SDLKDLLRNLLQVDLTKRFGN  283 (350)
T ss_dssp             TCC-HHHHHHHHHHSCSCTTTCTTS
T ss_pred             CCC-HHHHHHHHHHhhcCHHhccCC
Confidence            222 234556666777899999874

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.98  E-value=1.8e-32  Score=250.15  Aligned_cols=248  Identities=15%  Similarity=0.155  Sum_probs=171.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.+..+|+.||||.+..... .....+.+.+|+.+++.++||||        +++++++.+++.+|+||||
T Consensus        21 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e~   92 (294)
T 4eqm_A           21 GGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNI--------VSMIDVDEEDDCYYLVMEY   92 (294)
T ss_dssp             EETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             cCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCC--------ceEEEeeeeCCeEEEEEeC
Confidence            46778999999999999999999976554 44556788899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ..+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.+||
T Consensus        93 ~~g~~L~~~l~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~Dlkp~Nil~~~~~~~kl  152 (294)
T 4eqm_A           93 IEGPTLSEYIESH-GPL---SVDTAINFTNQILDGIKHAHDMR----------------IVHRDIKPQNILIDSNKTLKI  152 (294)
T ss_dssp             CCSCBHHHHHHHH-CSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTTSCEEE
T ss_pred             CCCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEECCCCCEEE
Confidence            9987 54433322 123   45556777889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC---CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKK---PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||+++......   .....||+.|++||+.. ..+ ..+|+|+   ++|++++ +..||.+.+..   +.        
T Consensus       153 ~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~-g~~pf~~~~~~---~~--------  220 (294)
T 4eqm_A          153 FDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLV-GEPPFNGETAV---SI--------  220 (294)
T ss_dssp             CCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHH-SSCSSCSSCHH---HH--------
T ss_pred             EeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHh-CCCCCCCCChH---HH--------
Confidence            9999998765443   23356899999999843 333 4566666   5666655 66677554311   00        


Q ss_pred             cccccccHhHHHHHHHhhc-cCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch--hHHHHHHHHHHhCCCCCCc
Q psy6542         242 VSQDLITVKGEQCVQLKLT-RDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC--SQELLGSMARKAGKIYGTT  318 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~-~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~--~~~lL~~l~~~~~~~~~~~  318 (334)
                                   ....+. ..|....    ...+.+++.+..  +...+...+|..|+  ++++.+.+.....+....+
T Consensus       221 -------------~~~~~~~~~~~~~~----~~~~~~~~~l~~--li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~~~~~  281 (294)
T 4eqm_A          221 -------------AIKHIQDSVPNVTT----DVRKDIPQSLSN--VILRATEKDKANRYKTIQEMKDDLSSVLHENRANE  281 (294)
T ss_dssp             -------------HHHHHSSCCCCHHH----HSCTTSCHHHHH--HHHHHSCSSGGGSCSSHHHHHHHHHTSSSSSSTTC
T ss_pred             -------------HHHHhhccCCCcch----hcccCCCHHHHH--HHHHHhcCCHhHccccHHHHHHHHHHHHhhccCCc
Confidence                         000000 0000000    012334444555  66677777777776  7777777776555444433

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.98  E-value=4e-32  Score=249.97  Aligned_cols=188  Identities=15%  Similarity=0.138  Sum_probs=143.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+.. |+.||||+++.........+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        31 ~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e~~  101 (311)
T 3niz_A           31 EGTYGVVYKAKDSQ-GRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNI--------VSLIDVIHSERCLTLVFEFM  101 (311)
T ss_dssp             ECSSCEEEEEEETT-SCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTB--------CCEEEEECCSSCEEEEEECC
T ss_pred             CCCCeEEEEEEECC-CCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCE--------eeeeeEEccCCEEEEEEcCC
Confidence            47788999999864 9999999998766554455678889999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      +|++..........+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.+||+|
T Consensus       102 ~~~l~~~~~~~~~~~---~~~~~~~~~~qi~~~l~~LH~~~----------------ivH~Dikp~NIl~~~~~~~kl~D  162 (311)
T 3niz_A          102 EKDLKKVLDENKTGL---QDSQIKIYLYQLLRGVAHCHQHR----------------ILHRDLKPQNLLINSDGALKLAD  162 (311)
T ss_dssp             SEEHHHHHHTCTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTCCEEECC
T ss_pred             CCCHHHHHHhccCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCchHhEEECCCCCEEEcc
Confidence            998443333322233   44555667789999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC--CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCCCC
Q psy6542         172 LGLACDFSKKK--PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       172 FGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~  228 (334)
                      ||+++......  .....||+.|++||+..  .. ...+|+|+   ++|+++. +..||.+....
T Consensus       163 fg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~  226 (311)
T 3niz_A          163 FGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMIT-GKPLFPGVTDD  226 (311)
T ss_dssp             CTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHH-SSCSCCCSSTT
T ss_pred             CcCceecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHh-CCCCCCCCChH
Confidence            99998765433  23456799999999853  23 44556666   5555555 56788766543

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.98  E-value=1.1e-32  Score=258.51  Aligned_cols=227  Identities=13%  Similarity=0.081  Sum_probs=168.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.++||+|.++.+|+.||||++++... .......+..|..+++.+ +||+|        +++++++.+.+.+|+|||
T Consensus        30 ~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~i--------v~l~~~~~~~~~~~lv~E  101 (353)
T 2i0e_A           30 KGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFL--------TQLHSCFQTMDRLYFVME  101 (353)
T ss_dssp             EETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTB--------CCEEEEEECSSEEEEEEE
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEE--------eeEEEEEEcCCEEEEEEe
Confidence            46788999999999999999999986532 122334567899999887 79999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +....... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+|
T Consensus       102 ~~~gg~L~~~l~~~-~~~---~~~~~~~~~~qi~~aL~~LH~~g----------------ivHrDlkp~NIll~~~g~vk  161 (353)
T 2i0e_A          102 YVNGGDLMYHIQQV-GRF---KEPHAVFYAAEIAIGLFFLQSKG----------------IIYRDLKLDNVMLDSEGHIK  161 (353)
T ss_dssp             CCCSCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCCGGGEEECTTSCEE
T ss_pred             CCCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EEeccCCHHHEEEcCCCcEE
Confidence            99987 44333321 233   44455667779999999999999                99999999999999999999


Q ss_pred             EEecccccccCC--CCCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSK--KKPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~--~~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+|+....  ......+||+.|++||+. ...++.+.|||    ++|+++. +.+||.+.+.....+.+..... .
T Consensus       162 L~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-G~~Pf~~~~~~~~~~~i~~~~~-~  239 (353)
T 2i0e_A          162 IADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA-GQAPFEGEDEDELFQSIMEHNV-A  239 (353)
T ss_dssp             ECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCC-C
T ss_pred             EEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHc-CCCCCCCCCHHHHHHHHHhCCC-C
Confidence            999999986433  234567899999999985 34466666666    5566655 6668877654333333333322 2


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      .+..+. ......+...+..+|..|+++
T Consensus       240 ~p~~~s-~~~~~li~~lL~~dP~~R~~~  266 (353)
T 2i0e_A          240 YPKSMS-KEAVAICKGLMTKHPGKRLGC  266 (353)
T ss_dssp             CCTTSC-HHHHHHHHHHTCSCTTSCTTC
T ss_pred             CCCCCC-HHHHHHHHHHhhcCHHHcCCC
Confidence            332222 244566777778899999976

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.98  E-value=6e-32  Score=254.25  Aligned_cols=228  Identities=19%  Similarity=0.205  Sum_probs=168.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||||++..........+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        39 ~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnI--------v~~~~~~~~~~~~~lv~e~~  110 (362)
T 2bdw_A           39 KGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNI--------VRLHDSIQEESFHYLVFDLV  110 (362)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEECCC
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEEeCCEEEEEEecC
Confidence            4677899999999999999999999776655556678899999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC---C
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG---H  166 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~---~  166 (334)
                      .|+ + +.+...  ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.++   .
T Consensus       111 ~gg~L~~~l~~~--~~~---~~~~~~~~~~qi~~al~~lH~~~----------------ivH~Dlkp~NIll~~~~~~~~  169 (362)
T 2bdw_A          111 TGGELFEDIVAR--EFY---SEADASHCIQQILESIAYCHSNG----------------IVHRNLKPENLLLASKAKGAA  169 (362)
T ss_dssp             CSCBHHHHHTTC--SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCSGGGEEESCSSTTCC
T ss_pred             CCCCHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEeccCchHHEEEecCCCCCC
Confidence            998 4 344222  123   44556677789999999999999                99999999999998654   5


Q ss_pred             EEEEecccccccCCCCC-CccccCccccccccccc-cC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccc
Q psy6542         167 VRISDLGLACDFSKKKP-HASVESDCILHGYIKKL-GG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIE  240 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~-~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  240 (334)
                      +||+|||+++....... ....||+.|++||+... .+ ..+|+|+   ++|+++ ++.+||.+.+.......+......
T Consensus       170 ~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll-~g~~Pf~~~~~~~~~~~i~~~~~~  248 (362)
T 2bdw_A          170 VKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILL-VGYPPFWDEDQHRLYAQIKAGAYD  248 (362)
T ss_dssp             EEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHH-HSSCSSCCSSHHHHHHHHHHTCCC
T ss_pred             EEEeecCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHH-HCCCCCCCCCHHHHHHHHHhCCCC
Confidence            99999999987765443 44678999999998543 34 4566666   555554 456677665532222222222211


Q ss_pred             ccccccc---cHhHHHHHHHhhccCchhhcCCC
Q psy6542         241 EVSQDLI---TVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       241 ~~~~~~~---~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                       .+...+   +......+..++..||..|++..
T Consensus       249 -~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~  280 (362)
T 2bdw_A          249 -YPSPEWDTVTPEAKSLIDSMLTVNPKKRITAD  280 (362)
T ss_dssp             -CCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             -CCcccccCCCHHHHHHHHHHcCCChhhCcCHH
Confidence             111111   12345667777788999998754

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.98  E-value=4.3e-32  Score=261.97  Aligned_cols=228  Identities=19%  Similarity=0.191  Sum_probs=168.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||+|++..........+.+.+|+++++.++||||        +++++++.+++.+|+|||||
T Consensus        21 ~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnI--------v~l~~~~~~~~~~~lv~E~~   92 (444)
T 3soa_A           21 KGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNI--------VRLHDSISEEGHHYLIFDLV   92 (444)
T ss_dssp             EC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTB--------CCEEEEEECSSEEEEEECCC
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCC--------CeEEEEEEECCEEEEEEEeC
Confidence            5788899999999999999999999877655556678899999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC---CCCC
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD---EHGH  166 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~---~~~~  166 (334)
                      .|+ + +.+...  ..+   .+..+..++.||+.||.|||+++                |+||||||+|||++   .++.
T Consensus        93 ~gg~L~~~i~~~--~~~---~e~~~~~i~~qil~aL~~lH~~g----------------ivHrDlKp~NIll~~~~~~~~  151 (444)
T 3soa_A           93 TGGELFEDIVAR--EYY---SEADASHCIQQILEAVLHCHQMG----------------VVHRNLKPENLLLASKLKGAA  151 (444)
T ss_dssp             BCCBHHHHHHHC--SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCSSTTEEESBSSTTCC
T ss_pred             CCCCHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCCHHHEEEeccCCCCc
Confidence            988 4 444332  233   44555667779999999999999                99999999999998   4578


Q ss_pred             EEEEecccccccCCCCC--CccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccc
Q psy6542         167 VRISDLGLACDFSKKKP--HASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQI  239 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  239 (334)
                      +||+|||+++.......  ....||+.|++||+...  .+..+|+|+   ++|++ .++.+||.+.+.......+.....
T Consensus       152 vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel-l~G~~Pf~~~~~~~~~~~i~~~~~  230 (444)
T 3soa_A          152 VKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYIL-LVGYPPFWDEDQHRLYQQIKAGAY  230 (444)
T ss_dssp             EEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHH-HHSSCSCCCSSHHHHHHHHHHTCC
T ss_pred             EEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHH-HhCCCCCCCccHHHHHHHHHhCCC
Confidence            99999999987765432  34678999999998543  344566666   55555 456668876654333333332222


Q ss_pred             ccccccc---ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         240 EEVSQDL---ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       240 ~~~~~~~---~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      . .+...   .+....+.+..++..||..|++..
T Consensus       231 ~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~  263 (444)
T 3soa_A          231 D-FPSPEWDTVTPEAKDLINKMLTINPSKRITAA  263 (444)
T ss_dssp             C-CCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             C-CCccccccCCHHHHHHHHHHcCCChhHCCCHH
Confidence            1 11111   122345566666777888887754

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.97  E-value=1.4e-32  Score=262.66  Aligned_cols=194  Identities=17%  Similarity=0.154  Sum_probs=151.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.||+|.++.+|+.||||++++... .......+.+|..+++.++||||        |++++++.+++.+|+||||
T Consensus        79 ~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~I--------v~l~~~~~~~~~~~lV~E~  150 (410)
T 3v8s_A           79 RGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWV--------VQLFYAFQDDRYLYMVMEY  150 (410)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             cCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEEECCEEEEEEeC
Confidence            57888999999999999999999986432 12223457789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+|| +..+....  .+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+||
T Consensus       151 ~~gg~L~~~l~~~--~~---~e~~~~~~~~qi~~aL~~LH~~g----------------ivHrDLKp~NILl~~~g~ikL  209 (410)
T 3v8s_A          151 MPGGDLVNLMSNY--DV---PEKWARFYTAEVVLALDAIHSMG----------------FIHRDVKPDNMLLDKSGHLKL  209 (410)
T ss_dssp             CTTEEHHHHHHHC--CC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTSCEEE
T ss_pred             CCCCcHHHHHHcC--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEeccCCHHHeeECCCCCEEE
Confidence            9988 54443321  33   34445566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC---CCccccCccccccccccc-c----CCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchh
Q psy6542         170 SDLGLACDFSKKK---PHASVESDCILHGYIKKL-G----GPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIF  235 (334)
Q Consensus       170 ~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~~-~----~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~  235 (334)
                      +|||+|+......   ..+.+||+.|++||+... +    ++.+.|||    ++|++++ +.+||.+.+.......+.
T Consensus       210 ~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~-G~~Pf~~~~~~~~~~~i~  286 (410)
T 3v8s_A          210 ADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV-GDTPFYADSLVGTYSKIM  286 (410)
T ss_dssp             CCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHH
T ss_pred             eccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHh-CCCCCCCCChhhHHHHHH
Confidence            9999998776553   346789999999998532 2    44455555    5566655 667888776444444443

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.97  E-value=6.5e-32  Score=266.16  Aligned_cols=233  Identities=17%  Similarity=0.137  Sum_probs=169.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.++||+|.++.+|+.||||++.+... .......+.+|+++++.++||||        +++++++.+.+.+|+||||
T Consensus       195 ~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~I--------v~l~~~~~~~~~l~lVmE~  266 (543)
T 3c4z_A          195 RGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFI--------VSLAYAFETKTDLCLVMTI  266 (543)
T ss_dssp             ECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             eCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCE--------eeEEEEEeeCCEEEEEEEe
Confidence            47788999999999999999999986443 11223467789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..................++.++.||+.||.|||+++                |+||||||+|||++.+|.+||
T Consensus       267 ~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g----------------IvHrDLKP~NILl~~~g~vkL  330 (543)
T 3c4z_A          267 MNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN----------------IIYRDLKPENVLLDDDGNVRI  330 (543)
T ss_dssp             CTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTSCEEE
T ss_pred             ccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcC----------------CcccCCChHHEEEeCCCCEEE
Confidence            9988 43332322111112244555667789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC--CccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhc---ccc
Q psy6542         170 SDLGLACDFSKKKP--HASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFM---DQI  239 (334)
Q Consensus       170 ~DFGla~~~~~~~~--~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~---~~~  239 (334)
                      +|||+++.......  ...+||+.|++||+. ...++.+.|||    ++|++++ +.+||.+.+.......+..   ...
T Consensus       331 ~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyellt-G~~PF~~~~~~~~~~~~~~~i~~~~  409 (543)
T 3c4z_A          331 SDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIA-ARGPFRARGEKVENKELKQRVLEQA  409 (543)
T ss_dssp             CCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCTTCCCCHHHHHHHHHHCC
T ss_pred             eecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHh-CCCCCCCCccchhHHHHHHHHhhcc
Confidence            99999997765543  345899999999985 34466666666    5566555 6678877653322221111   111


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...+..+. ......+...+..||..|++..
T Consensus       410 ~~~p~~~s-~~~~~li~~lL~~dP~~R~~~~  439 (543)
T 3c4z_A          410 VTYPDKFS-PASKDFCEALLQKDPEKRLGFR  439 (543)
T ss_dssp             CCCCTTSC-HHHHHHHHHHSCSSGGGSCCCB
T ss_pred             cCCCcccC-HHHHHHHHHhccCCHhHCCCCc
Confidence            12222222 2455677777788999999763

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.6e-32  Score=253.36  Aligned_cols=227  Identities=20%  Similarity=0.203  Sum_probs=168.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+..+|+.||||++..... .....+.+.+|+++++.++||||        +++++++.+.+.+|+||||
T Consensus        19 ~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI--------v~l~~~~~~~~~~~lv~E~   90 (336)
T 3h4j_B           19 EGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHI--------IKLYDVITTPTDIVMVIEY   90 (336)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCC--------CeEEEEEEeCCEEEEEEEC
Confidence            47788999999999999999999985432 22233467889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ ++.+...  ..+   .......++.|++.||.|||+++                |+||||||+|||+++++.+||
T Consensus        91 ~~g~l~~~l~~~--~~l---~~~~~~~i~~qi~~aL~~LH~~g----------------ivH~Dlkp~NIll~~~~~~kl  149 (336)
T 3h4j_B           91 AGGELFDYIVEK--KRM---TEDEGRRFFQQIICAIEYCHRHK----------------IVHRDLKPENLLLDDNLNVKI  149 (336)
T ss_dssp             CCEEHHHHHHHH--CSC---CHHHHHHHHHHHHHHHHHHHHHT----------------CCCCCCSTTTEEECTTCCEEE
T ss_pred             CCCcHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEecCCchhhEEEcCCCCEEE
Confidence            9766 4444332  233   44555677789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-CCccccCcccccccccccc---CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDFSKKK-PHASVESDCILHGYIKKLG---GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~~---~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||++....... ....+||+.|++||+....   ++.+|+|+   ++|+++ ++..||.+.........+.... ...
T Consensus       150 ~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll-~g~~Pf~~~~~~~~~~~i~~~~-~~~  227 (336)
T 3h4j_B          150 ADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVML-VGRLPFDDEFIPNLFKKVNSCV-YVM  227 (336)
T ss_dssp             CCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHH-HSSCSSBCSSSTTCBCCCCSSC-CCC
T ss_pred             EEeccceeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHH-hCCCCCCCccHHHHHHHHHcCC-CCC
Confidence            9999998766554 3456789999999985322   34567777   555554 4666887665444333332222 122


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +.. .+......+...+..||..|++..
T Consensus       228 p~~-~s~~~~~li~~~L~~dP~~Rpt~~  254 (336)
T 3h4j_B          228 PDF-LSPGAQSLIRRMIVADPMQRITIQ  254 (336)
T ss_dssp             CTT-SCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             ccc-CCHHHHHHHHHHcCCChhHCcCHH
Confidence            222 222344566666677898888753

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.97  E-value=9.7e-32  Score=251.28  Aligned_cols=228  Identities=15%  Similarity=0.173  Sum_probs=166.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.++||+|.++.+|+.||||++++... .....+.+.+|..+++.+ +||||        +++++++.+.+.+|+|||
T Consensus        19 ~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~i--------v~l~~~~~~~~~~~lv~e   90 (345)
T 3a8x_A           19 RGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFL--------VGLHSCFQTESRLFFVIE   90 (345)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTB--------CCEEEEEECSSEEEEEEC
T ss_pred             ecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCcc--------CeEEEEEEeCCEEEEEEe
Confidence            57888999999999999999999987654 334455778899999987 89999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +....... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+|
T Consensus        91 ~~~gg~L~~~l~~~-~~l---~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDlkp~NIll~~~g~~k  150 (345)
T 3a8x_A           91 YVNGGDLMFHMQRQ-RKL---PEEHARFYSAEISLALNYLHERG----------------IIYRDLKLDNVLLDSEGHIK  150 (345)
T ss_dssp             CCCSCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCCGGGEEECTTSCEE
T ss_pred             CCCCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ceecCCCHHHEEECCCCCEE
Confidence            99987 43332322 233   44555667779999999999999                99999999999999999999


Q ss_pred             EEecccccccCC--CCCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCc---------cc
Q psy6542         169 ISDLGLACDFSK--KKPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSK---------PE  232 (334)
Q Consensus       169 l~DFGla~~~~~--~~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~---------~~  232 (334)
                      |+|||+|+....  ......+||+.|++||+. ...++.+.|||    ++|++++ +..||........         .+
T Consensus       151 L~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~~~~~~~~~  229 (345)
T 3a8x_A          151 LTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA-GRSPFDIVGSSDNPDQNTEDYLFQ  229 (345)
T ss_dssp             ECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCTTTTTTC-------CHHHHHH
T ss_pred             EEeccccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHh-CCCCcCCcccccccccccHHHHHH
Confidence            999999986433  234556899999999985 34455555655    5566655 5668765332111         11


Q ss_pred             chhcccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         233 LIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.... ...+.... ......+...+..||..|+++.
T Consensus       230 ~i~~~~-~~~p~~~s-~~~~~li~~lL~~dP~~R~~~~  265 (345)
T 3a8x_A          230 VILEKQ-IRIPRSLS-VKAASVLKSFLNKDPKERLGCH  265 (345)
T ss_dssp             HHHHCC-CCCCTTSC-HHHHHHHHHHTCSSTTTSTTCC
T ss_pred             HHHcCC-CCCCCCCC-HHHHHHHHHHhcCCHhHCCCCC
Confidence            111111 12232222 2445566777788999999863

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.97  E-value=3.7e-32  Score=256.81  Aligned_cols=228  Identities=15%  Similarity=0.132  Sum_probs=161.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHH-HHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEI-FNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~i-l~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.++||+|.++.+++.||||++++... .......+..|..+ ++.++||||        +++++++.+.+.+|+|||
T Consensus        48 ~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~I--------v~l~~~~~~~~~~~lv~E  119 (373)
T 2r5t_A           48 KGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFL--------VGLHFSFQTADKLYFVLD  119 (373)
T ss_dssp             CCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTB--------CCEEEEEECSSEEEEEEE
T ss_pred             eCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCC--------CCEEEEEEeCCEEEEEEe
Confidence            57888999999999999999999987654 22233455667776 577999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +..+... ...+.   ...+..++.||+.||.|||+++                |+||||||+|||++.+|++|
T Consensus       120 ~~~gg~L~~~l~~-~~~~~---~~~~~~~~~qi~~aL~~LH~~g----------------ivHrDlkp~NIll~~~g~ik  179 (373)
T 2r5t_A          120 YINGGELFYHLQR-ERCFL---EPRARFYAAEIASALGYLHSLN----------------IVYRDLKPENILLDSQGHIV  179 (373)
T ss_dssp             CCCSCBHHHHHHH-HSSCC---HHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTTSCEE
T ss_pred             CCCCCcHHHHHHh-cCCCC---HHHHHHHHHHHHHHHHHHHHCC----------------ceecCCCHHHEEECCCCCEE
Confidence            99998 4333222 22333   3444556779999999999999                99999999999999999999


Q ss_pred             EEecccccccCC--CCCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSK--KKPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~--~~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+|+....  ......+||+.|++||+. ...++.+.|||    ++|+++ .+.+||.+.+.....+.+..... .
T Consensus       180 L~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell-~G~~Pf~~~~~~~~~~~i~~~~~-~  257 (373)
T 2r5t_A          180 LTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEML-YGLPPFYSRNTAEMYDNILNKPL-Q  257 (373)
T ss_dssp             ECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHH-HSSCTTCCSBHHHHHHHHHHSCC-C
T ss_pred             EeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHH-cCCCCCCCCCHHHHHHHHHhccc-C
Confidence            999999986433  234567899999999985 34466666666    556655 56678877654333333333322 1


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+.... ......+...+..||..|++..
T Consensus       258 ~~~~~~-~~~~~li~~lL~~dp~~R~~~~  285 (373)
T 2r5t_A          258 LKPNIT-NSARHLLEGLLQKDRTKRLGAK  285 (373)
T ss_dssp             CCSSSC-HHHHHHHHHHTCSSGGGSTTTT
T ss_pred             CCCCCC-HHHHHHHHHHcccCHHhCCCCC
Confidence            222222 2445667777788999999874

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.97  E-value=7.6e-32  Score=255.43  Aligned_cols=186  Identities=11%  Similarity=0.083  Sum_probs=147.9

Q ss_pred             CceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCC
Q psy6542          14 SKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSG   93 (334)
Q Consensus        14 ~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g   93 (334)
                      +.+.||+|.++.+|+.||||+++.........+.+.+|+++++.++||||        |++++++.+++.+|+||||++|
T Consensus        39 ~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~lv~e~~~~  110 (389)
T 3gni_B           39 DLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNI--------VPYRATFIADNELWVVTSFMAY  110 (389)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEEECCTT
T ss_pred             CceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCC--------CcEeEEEEECCEEEEEEEccCC
Confidence            77899999999999999999999776666667788899999999999999        9999999999999999999998


Q ss_pred             C-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          94 P-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        94 ~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      + +..+... ....+   ....+..++.||+.||.|||+++                |+||||||+|||++.++.+||+|
T Consensus       111 ~~L~~~l~~~~~~~~---~~~~~~~~~~qi~~~l~~LH~~~----------------ivHrDlkp~NIll~~~~~~kl~d  171 (389)
T 3gni_B          111 GSAKDLICTHFMDGM---NELAIAYILQGVLKALDYIHHMG----------------YVHRSVKASHILISVDGKVYLSG  171 (389)
T ss_dssp             CBHHHHHHHTCTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTCCEEECC
T ss_pred             CCHHHHHhhhcccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEEcCCCCEEEcc
Confidence            8 4333332 22233   44556677789999999999999                99999999999999999999999


Q ss_pred             cccccccCCC---------CCCccccCccccccccccc---c-CCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         172 LGLACDFSKK---------KPHASVESDCILHGYIKKL---G-GPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       172 FGla~~~~~~---------~~~~~~~t~~~~~~~v~~~---~-~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      ||++......         ......||..|++||+...   . +..+|+|+   ++|+++ ++..||.+.+.
T Consensus       172 fg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~-~g~~pf~~~~~  242 (389)
T 3gni_B          172 LRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELA-NGHVPFKDMPA  242 (389)
T ss_dssp             GGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHH-HSSCTTTTCCS
T ss_pred             cccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHH-HCCCCCCCCCH
Confidence            9998754221         1233467889999998543   3 44566666   555554 46778876554

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.97  E-value=7.9e-32  Score=253.46  Aligned_cols=229  Identities=17%  Similarity=0.139  Sum_probs=168.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcch----HHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHES----RVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~----~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++.+.||+|.++.+|+.||||++++.....    ...+.+.+|+++++.++||||        +++++++.+++.+|+|
T Consensus        22 ~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnI--------v~l~~~~~~~~~~~lv   93 (361)
T 2yab_A           22 SGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNI--------ITLHDVYENRTDVVLI   93 (361)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSEEEEE
T ss_pred             eCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCC--------CcEEEEEEeCCEEEEE
Confidence            4678899999999999999999998765421    123567889999999999999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-  165 (334)
                      |||++|+ +..+.... ..+   ....+..++.||+.||.|||+++                |+||||||+|||+++++ 
T Consensus        94 ~e~~~gg~L~~~l~~~-~~l---~~~~~~~i~~qi~~aL~~LH~~g----------------ivHrDlkp~NIll~~~~~  153 (361)
T 2yab_A           94 LELVSGGELFDFLAQK-ESL---SEEEATSFIKQILDGVNYLHTKK----------------IAHFDLKPENIMLLDKNI  153 (361)
T ss_dssp             EECCCSCBHHHHHTTC-SCC---BHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEESCTTS
T ss_pred             EEcCCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEEeCCCC
Confidence            9999887 43332221 233   44556677789999999999999                99999999999998877 


Q ss_pred             ---CEEEEecccccccCCCC-CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         166 ---HVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       166 ---~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                         .+||+|||+++...... ....+||+.|++||+.. ..++ .+|+|+   ++|+++. +.+||.+.+.......+..
T Consensus       154 ~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~-g~~Pf~~~~~~~~~~~i~~  232 (361)
T 2yab_A          154 PIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS-GASPFLGDTKQETLANITA  232 (361)
T ss_dssp             SSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SCCSSCCSSHHHHHHHHHT
T ss_pred             CccCEEEEecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHh
Confidence               79999999998776543 34567999999999854 3344 455555   5555554 6678877654333322222


Q ss_pred             cccccccccc---ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         237 DQIEEVSQDL---ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       237 ~~~~~~~~~~---~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .... .+...   .+....+.+...+..||..|++..
T Consensus       233 ~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~  268 (361)
T 2yab_A          233 VSYD-FDEEFFSQTSELAKDFIRKLLVKETRKRLTIQ  268 (361)
T ss_dssp             TCCC-CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             cCCC-CCchhccCCCHHHHHHHHHHCCCChhHCcCHH
Confidence            2211 11111   111345677777788999998854

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.97  E-value=2.5e-32  Score=264.31  Aligned_cols=177  Identities=18%  Similarity=0.091  Sum_probs=133.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-----CCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-----PNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-----~~~~~i   86 (334)
                      +|+.+.||+|.++.+|+.||||++.....+....+++.+|+++|+.++||||        |++++++..     .+.+|+
T Consensus        63 ~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~ni--------v~l~~~~~~~~~~~~~~~~l  134 (458)
T 3rp9_A           63 TGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHV--------VKVLDIVIPKDVEKFDELYV  134 (458)
T ss_dssp             -----CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTB--------CCEEEECCCSCTTTCCCEEE
T ss_pred             ecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCC--------CceEEEEecCCcccCceEEE
Confidence            5677899999999999999999998766666666788899999999999999        999999953     357999


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||++|++..+.... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.++.
T Consensus       135 v~e~~~~~L~~~~~~~-~~l---~~~~~~~~~~qi~~aL~~LH~~~----------------iiHrDlKp~NILl~~~~~  194 (458)
T 3rp9_A          135 VLEIADSDFKKLFRTP-VYL---TELHIKTLLYNLLVGVKYVHSAG----------------ILHRDLKPANCLVNQDCS  194 (458)
T ss_dssp             EECCCSEEHHHHHHSS-CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCCGGGEEECTTCC
T ss_pred             EEeccccchhhhcccC-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cCCCCCChhhEEECCCCC
Confidence            9999988865443332 223   44555667789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC-----------------------------CCccccCccccccccc--cccCCccee-eh---hH
Q psy6542         167 VRISDLGLACDFSKKK-----------------------------PHASVESDCILHGYIK--KLGGPFVSA-WQ---TR  211 (334)
Q Consensus       167 vkl~DFGla~~~~~~~-----------------------------~~~~~~t~~~~~~~v~--~~~~~~~~~-w~---~~  211 (334)
                      +||+|||+|+......                             ....+||+.|++||+.  ...++.+.| |+   ++
T Consensus       195 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il  274 (458)
T 3rp9_A          195 VKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIF  274 (458)
T ss_dssp             EEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHH
T ss_pred             EeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHH
Confidence            9999999998764321                             2334679999999963  344555545 55   66


Q ss_pred             HHHHc
Q psy6542         212 YAKLF  216 (334)
Q Consensus       212 ~~~l~  216 (334)
                      |+++.
T Consensus       275 ~ellt  279 (458)
T 3rp9_A          275 AELLN  279 (458)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            77765

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.97  E-value=6.3e-32  Score=252.91  Aligned_cols=232  Identities=16%  Similarity=0.138  Sum_probs=162.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++.+.||+|.++.+|+.||||++.....   .....+.+.+|+++++.++||||        +++++++.+++.+|+||
T Consensus        34 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI--------v~~~~~~~~~~~~~lv~  105 (351)
T 3c0i_A           34 KGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHI--------VELLETYSSDGMLYMVF  105 (351)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEE
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCC--------CcEEEEEEeCCEEEEEE
Confidence            57788999999999999999999975322   11124567889999999999999        99999999999999999


Q ss_pred             EccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          89 VRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        89 Ey~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+|+ + +.+..... ......+..+..++.||+.||.|||+++                |+||||||+|||++.++.
T Consensus       106 e~~~g~~L~~~l~~~~~-~~~~~~~~~~~~i~~qi~~al~~lH~~~----------------ivHrDlkp~NIl~~~~~~  168 (351)
T 3c0i_A          106 EFMDGADLCFEIVKRAD-AGFVYSEAVASHYMRQILEALRYCHDNN----------------IIHRDVKPHCVLLASKEN  168 (351)
T ss_dssp             ECCSSCBHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECSSST
T ss_pred             eCCCCCCHHHHHHHhcc-cCCCCCHHHHHHHHHHHHHHHHHHHHCC----------------ceeccCChHHeEEecCCC
Confidence            999987 4 33333221 1111244556677789999999999999                999999999999987655


Q ss_pred             ---EEEEecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         167 ---VRISDLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       167 ---vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                         +||+|||+++......  .....||+.|++||+.. .. ...+|+|+   ++|+++ ++..||.+... ...+.+..
T Consensus       169 ~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll-~g~~pf~~~~~-~~~~~i~~  246 (351)
T 3c0i_A          169 SAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILL-SGCLPFYGTKE-RLFEGIIK  246 (351)
T ss_dssp             TCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHH-HSSCSSCSSHH-HHHHHHHH
T ss_pred             CCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHH-HCCCCCCCcHH-HHHHHHHc
Confidence               9999999998776543  23457899999999853 23 44566666   555555 46667766431 11111211


Q ss_pred             cccccccc--ccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         237 DQIEEVSQ--DLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       237 ~~~~~~~~--~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ......+.  ...+......+..++..||..|++..
T Consensus       247 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~  282 (351)
T 3c0i_A          247 GKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVY  282 (351)
T ss_dssp             TCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             CCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHH
Confidence            11110000  01111344566666777888887754

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.97  E-value=1.4e-31  Score=250.50  Aligned_cols=229  Identities=14%  Similarity=0.030  Sum_probs=163.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+..+|+.||||++..... .....+.+.+|+++++.++||||        +++++++.+++..|+||||
T Consensus        64 ~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~lv~e~  135 (348)
T 1u5q_A           64 HGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNT--------IQYRGCYLREHTAWLVMEY  135 (348)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEEEC
T ss_pred             cCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCE--------eeEEEEEEECCeEEEEEec
Confidence            57788999999999999999999987654 33345678899999999999999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +.|++..+.......+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.+||+
T Consensus       136 ~~g~l~~~l~~~~~~l---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~Dlkp~NIll~~~~~~kL~  196 (348)
T 1u5q_A          136 CLGSASDLLEVHKKPL---QEVEIAAVTHGALQGLAYLHSHN----------------MIHRDVKAGNILLSEPGLVKLG  196 (348)
T ss_dssp             CSEEHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCSGGGEEEETTTEEEEC
T ss_pred             CCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeeCCCCHHHEEECCCCCEEEe
Confidence            9988433323222233   44555677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCCccccCccccccccc----ccc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         171 DLGLACDFSKKKPHASVESDCILHGYIK----KLG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       171 DFGla~~~~~~~~~~~~~t~~~~~~~v~----~~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |||+++.....  ....||+.|++||+.    ... ...+|+|+   ++|+++. +..||.+.+.......+........
T Consensus       197 DfG~a~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~  273 (348)
T 1u5q_A          197 DFGSASIMAPA--NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPLFNMNAMSALYHIAQNESPAL  273 (348)
T ss_dssp             CCTTCBSSSSB--CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSCCCCC
T ss_pred             eccCceecCCC--CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHhcCCCCC
Confidence            99999876543  345789999999985    223 44566666   5566655 5557655442111111111111111


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ....++..-...+..++..+|..|++..
T Consensus       274 ~~~~~~~~l~~li~~~l~~dP~~Rps~~  301 (348)
T 1u5q_A          274 QSGHWSEYFRNFVDSCLQKIPQDRPTSE  301 (348)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCHHHHHHHHHHcccChhhCcCHH
Confidence            1122222334556666677787777654

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.97  E-value=1.9e-31  Score=243.82  Aligned_cols=183  Identities=14%  Similarity=0.160  Sum_probs=145.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..+|+.||||.+.......  .+.+.+|+.+++.++||||        +++++++..++.+|+||||+
T Consensus        30 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e~~   99 (297)
T 3fxz_A           30 QGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPNI--------VNYLDSYLVGDELWVVMEYL   99 (297)
T ss_dssp             EETTEEEEEEEBTTTCCEEEEEEEEGGGCSC--HHHHHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEeecccccH--HHHHHHHHHHHhcCCCCCC--------CeEeEEEEECCEEEEEEECC
Confidence            4778899999999999999999998654432  3457789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+....  .+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.+||+
T Consensus       100 ~~~~L~~~~~~~--~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~Dlkp~Nil~~~~~~~kl~  158 (297)
T 3fxz_A          100 AGGSLTDVVTET--CM---DEGQIAAVCRECLQALEFLHSNQ----------------VIHRDIKSDNILLGMDGSVKLT  158 (297)
T ss_dssp             TTCBHHHHHHHS--CC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTCCEEEC
T ss_pred             CCCCHHHHHhhc--CC---CHHHHHHHHHHHHHHHHHHHhCC----------------ceeCCCCHHHEEECCCCCEEEe
Confidence            888 54443322  22   44556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+++......  .....||+.|++||+.. .. +..+|+|+   ++|+++. +..||.+.+
T Consensus       159 Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~  220 (297)
T 3fxz_A          159 DFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE-GEPPYLNEN  220 (297)
T ss_dssp             CCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHH-SSCTTTTSC
T ss_pred             eCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCC
Confidence            999998765543  34457899999999842 33 44566666   5566655 666775543

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.97  E-value=6.2e-32  Score=260.22  Aligned_cols=195  Identities=16%  Similarity=0.124  Sum_probs=151.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.||+|.++.+|+.||||++++... .......+.+|..+++.++||||        +++++++.+++.+|+||||
T Consensus        84 ~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~I--------v~l~~~~~~~~~~~lV~Ey  155 (437)
T 4aw2_A           84 RGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWI--------TTLHYAFQDDNNLYLVMDY  155 (437)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             eCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCE--------EEEEEEEeeCCEEEEEEec
Confidence            57889999999999999999999986432 22233457889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |.|| +..+.......+   .+..+..++.|++.||.|||+++                |+||||||+|||++.++.+||
T Consensus       156 ~~gg~L~~~l~~~~~~l---~e~~~~~~~~qi~~aL~~LH~~g----------------iiHrDLKp~NILl~~~g~vkL  216 (437)
T 4aw2_A          156 YVGGDLLTLLSKFEDRL---PEEMARFYLAEMVIAIDSVHQLH----------------YVHRDIKPDNILMDMNGHIRL  216 (437)
T ss_dssp             CTTCBHHHHHHTTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTSCEEE
T ss_pred             CCCCcHHHHHHHccCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEecccCHHHeeEcCCCCEEE
Confidence            9888 544433322334   34445566779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC---CccccCcccccccccc------ccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         170 SDLGLACDFSKKKP---HASVESDCILHGYIKK------LGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       170 ~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~------~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      +|||+|+.......   ...+||+.|++||+..      ..++.+.|||    ++|+++ ++.+||.+.+.......+
T Consensus       217 ~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~ell-tG~~Pf~~~~~~~~~~~i  293 (437)
T 4aw2_A          217 ADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEML-YGETPFYAESLVETYGKI  293 (437)
T ss_dssp             CCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHH-HSSCTTCCSSHHHHHHHH
T ss_pred             cchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHH-hCCCCCCCCChhHHHHhh
Confidence            99999987655432   3467999999999853      2345555555    556665 466788776644333333

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.1e-30  Score=239.53  Aligned_cols=181  Identities=14%  Similarity=0.064  Sum_probs=142.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+..+|+.||+|.+...  +....+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        20 ~G~~g~V~~~~~~~~~~~va~K~~~~~--~~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e~~   89 (310)
T 3s95_A           20 KGCFGQAIKVTHRETGEVMVMKELIRF--DEETQRTFLKEVKVMRCLEHPNV--------LKFIGVLYKDKRLNFITEYI   89 (310)
T ss_dssp             CCSSEEEEEEEETTTCCEEEEEEESCC--CHHHHHHHHHHHHHHTTCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             CCCCEEEEEEEECCCCcEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCcCc--------ccEEEEEecCCeeEEEEEec
Confidence            578889999999999999999998643  33455678899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+.......+   .....+.++.|++.||.|||+++                |+||||||+|||++.++.+||+
T Consensus        90 ~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~al~~lH~~~----------------ivH~dlkp~Nil~~~~~~~kl~  150 (310)
T 3s95_A           90 KGGTLRGIIKSMDSQY---PWSQRVSFAKDIASGMAYLHSMN----------------IIHRDLNSHNCLVRENKNVVVA  150 (310)
T ss_dssp             TTCBHHHHHHHCCTTS---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSTTSEEECTTSCEEEC
T ss_pred             CCCcHHHHHHhccCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccCCCCCcCeEEECCCCCEEEe
Confidence            987 544434322233   44556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCC----------------ccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCC
Q psy6542         171 DLGLACDFSKKKPH----------------ASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       171 DFGla~~~~~~~~~----------------~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                      |||+++........                ...||+.|++||+.. .. +..+|+|+   ++|+++.+ ..|+
T Consensus       151 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g-~~~~  222 (310)
T 3s95_A          151 DFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGR-VNAD  222 (310)
T ss_dssp             CCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHT-CCSS
T ss_pred             ecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcC-CCCC
Confidence            99999876443321                456899999999853 23 44566666   66666654 4343

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=3.5e-32  Score=257.75  Aligned_cols=186  Identities=19%  Similarity=0.130  Sum_probs=139.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCC--eEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPN--SHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~--~~~ivm   88 (334)
                      +++.+.||+|.++.+|+.||||++..........+.+.+|+.+++.+. ||||        +++++++...+  .+|+||
T Consensus        19 ~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~ni--------v~l~~~~~~~~~~~~~lv~   90 (388)
T 3oz6_A           19 KGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENI--------VNLLNVLRADNDRDVYLVF   90 (388)
T ss_dssp             -----CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTB--------CCEEEEEECTTSSCEEEEE
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCC--------CeeeeEEecCCCCEEEEEe
Confidence            577889999999999999999999876555556667888999999997 9999        99999997543  799999


Q ss_pred             EccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          89 VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        89 Ey~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |||+|++..+....  .+   .......++.|++.||.|||+++                |+||||||+|||++.++.+|
T Consensus        91 e~~~~~L~~~~~~~--~~---~~~~~~~i~~qi~~~L~~LH~~~----------------ivHrDlkp~NIll~~~~~~k  149 (388)
T 3oz6_A           91 DYMETDLHAVIRAN--IL---EPVHKQYVVYQLIKVIKYLHSGG----------------LLHRDMKPSNILLNAECHVK  149 (388)
T ss_dssp             ECCSEEHHHHHHHT--CC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTCCEE
T ss_pred             cccCcCHHHHHHcC--CC---CHHHHHHHHHHHHHHHHHHHhCC----------------EEeCCCCHHHeEEcCCCCEE
Confidence            99998865544432  23   33344556779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCC-----------------------CCCccccCcccccccccc--ccCC-cceeeh---hHHHHHcCCC
Q psy6542         169 ISDLGLACDFSKK-----------------------KPHASVESDCILHGYIKK--LGGP-FVSAWQ---TRYAKLFPNR  219 (334)
Q Consensus       169 l~DFGla~~~~~~-----------------------~~~~~~~t~~~~~~~v~~--~~~~-~~~~w~---~~~~~l~~~~  219 (334)
                      |+|||+|+.+...                       .....+||+.|++||+..  ..++ .+|+|+   ++|++ .++.
T Consensus       150 l~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~el-l~g~  228 (388)
T 3oz6_A          150 VADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEI-LCGK  228 (388)
T ss_dssp             ECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHH-HHSS
T ss_pred             ecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHH-HhCC
Confidence            9999999865431                       122357899999999853  3445 455555   55555 4567


Q ss_pred             CCCCCCCC
Q psy6542         220 LELHPESG  227 (334)
Q Consensus       220 ~~~~~~~~  227 (334)
                      +||.+.+.
T Consensus       229 ~pf~~~~~  236 (388)
T 3oz6_A          229 PIFPGSST  236 (388)
T ss_dssp             CSCCCSSH
T ss_pred             CCCCCCCH
Confidence            78877653

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.97  E-value=2.6e-31  Score=242.46  Aligned_cols=183  Identities=16%  Similarity=0.187  Sum_probs=139.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc------------------------hHHhhhHHHHHHHHHhcCCCCccccc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE------------------------SRVAKWRPYIQEIFNHLRNEPFKKCV   67 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~------------------------~~~~~~~~~E~~il~~l~h~~i~~~~   67 (334)
                      +++.+.||+|.++.+|+.||||++......                        ....+.+.+|+++++.++||||    
T Consensus        23 ~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i----   98 (298)
T 2zv2_A           23 KGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNV----   98 (298)
T ss_dssp             C--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTTB----
T ss_pred             ecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCCC----
Confidence            577889999999999999999999865431                        1123567889999999999999    


Q ss_pred             ccceeeEEEEeec--CCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcC
Q psy6542          68 LLFKMNLYKVTSE--PNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTL  144 (334)
Q Consensus        68 ~~~~v~~~~~~~~--~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~  144 (334)
                          +++++++.+  .+.+|+||||++|+ +..+...  ..+   ....++.++.|++.||.|||+++            
T Consensus        99 ----v~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~---~~~~~~~~~~qi~~~l~~lH~~~------------  157 (298)
T 2zv2_A           99 ----VKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPL---SEDQARFYFQDLIKGIEYLHYQK------------  157 (298)
T ss_dssp             ----CCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS--SCC---CHHHHHHHHHHHHHHHHHHHHTT------------
T ss_pred             ----CeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc--CCC---CHHHHHHHHHHHHHHHHHHHHCC------------
Confidence                999999986  56899999999988 4332221  122   45556677889999999999999            


Q ss_pred             CCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCC--CCccccCcccccccccccc-----CCcceeeh---hHHHH
Q psy6542         145 SVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKK--PHASVESDCILHGYIKKLG-----GPFVSAWQ---TRYAK  214 (334)
Q Consensus       145 ~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~~-----~~~~~~w~---~~~~~  214 (334)
                          |+||||||+|||++.++.+||+|||+++......  .....||+.|++||+....     ...+|+|+   ++|++
T Consensus       158 ----ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l  233 (298)
T 2zv2_A          158 ----IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCF  233 (298)
T ss_dssp             ----EECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHH
T ss_pred             ----eeccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHH
Confidence                9999999999999999999999999998775543  2345789999999985432     23457777   55666


Q ss_pred             HcCCCCCCCC
Q psy6542         215 LFPNRLELHP  224 (334)
Q Consensus       215 l~~~~~~~~~  224 (334)
                      +. +..||..
T Consensus       234 ~~-g~~pf~~  242 (298)
T 2zv2_A          234 VF-GQCPFMD  242 (298)
T ss_dssp             HH-SSCSSCC
T ss_pred             HH-CCCCCCC
Confidence            55 5557644

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.97  E-value=7.6e-32  Score=259.33  Aligned_cols=177  Identities=19%  Similarity=0.140  Sum_probs=140.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC-----CeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP-----NSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~-----~~~~i   86 (334)
                      +++.+.||+|.++.+|+.||||+++.........+++.+|+++++.++||||        +++++++...     +.+|+
T Consensus        36 ~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nI--------v~l~~~~~~~~~~~~~~~~l  107 (432)
T 3n9x_A           36 RGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYI--------IRLYDLIIPDDLLKFDELYI  107 (432)
T ss_dssp             EETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTB--------CCEEEECCCSCTTTCCCEEE
T ss_pred             ecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCc--------ceEEEEEecCCCCcCCeEEE
Confidence            4677899999999999999999998766666666788999999999999999        9999999865     57999


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||++|++..+.... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.++.
T Consensus       108 v~e~~~~~L~~~~~~~-~~l---~~~~~~~i~~qil~aL~~LH~~g----------------ivHrDlkp~NILl~~~~~  167 (432)
T 3n9x_A          108 VLEIADSDLKKLFKTP-IFL---TEEHIKTILYNLLLGENFIHESG----------------IIHRDLKPANCLLNQDCS  167 (432)
T ss_dssp             EEECCSEEHHHHHHSS-CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTCC
T ss_pred             EEecCCcCHHHHHhcc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CCCCCCCHHHeEECCCCC
Confidence            9999998865443332 123   44556677789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC------------------------CCccccCccccccccc--cccCCc-ceeeh---hHHHHHc
Q psy6542         167 VRISDLGLACDFSKKK------------------------PHASVESDCILHGYIK--KLGGPF-VSAWQ---TRYAKLF  216 (334)
Q Consensus       167 vkl~DFGla~~~~~~~------------------------~~~~~~t~~~~~~~v~--~~~~~~-~~~w~---~~~~~l~  216 (334)
                      +||+|||+|+......                        ....+||+.|++||+.  ...++. +|+|+   ++|+++.
T Consensus       168 ~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~  247 (432)
T 3n9x_A          168 VKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLN  247 (432)
T ss_dssp             EEECCCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHT
T ss_pred             EEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHh
Confidence            9999999999765432                        2456789999999973  343555 45555   6666664

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.97  E-value=4.4e-31  Score=249.04  Aligned_cols=241  Identities=13%  Similarity=0.069  Sum_probs=168.7

Q ss_pred             CCCceEEEeceeC-------CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPPSLK-------PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~-------~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      +++.+.||+|.+.       .++..||||+++..... ...+.+.+|+++++.+ +||||        +++++++.+++.
T Consensus        91 ~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~~hpnI--------v~~~~~~~~~~~  161 (370)
T 2psq_A           91 EGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNI--------INLLGACTQDGP  161 (370)
T ss_dssp             CCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBH-HHHHHHHHHHHHHHHSCCCTTB--------CCEEEEECSSSS
T ss_pred             eCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCH-HHHHHHHHHHHHHHHhcCCCCE--------eeEEEEEccCCC
Confidence            4677899999864       45667999999866433 3445788899999999 89999        999999999999


Q ss_pred             EEEEEEccCCC-hhHHhhhhhh----------h--hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE
Q psy6542          84 HYIIGVRQSGP-KDQISRSKIN----------R--YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH  150 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~~~~----------~--~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii  150 (334)
                      +|+||||+.|+ +..+......          .  ........++.++.||+.||.|||+++                |+
T Consensus       162 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~----------------iv  225 (370)
T 2psq_A          162 LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK----------------CI  225 (370)
T ss_dssp             CEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTT----------------EE
T ss_pred             EEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC----------------ee
Confidence            99999999987 4433332210          0  011245556778889999999999999                99


Q ss_pred             eeCCCCCceeeCCCCCEEEEecccccccCCCC----CCccccCccccccccc-cccCCc-ceeeh---hHHHHHcCCCCC
Q psy6542         151 FRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIK-KLGGPF-VSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       151 HrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~-~~~~~~-~~~w~---~~~~~l~~~~~~  221 (334)
                      ||||||+|||++.++.+||+|||+++......    .....+++.|++||+. ...++. +|+|+   ++|+++..+..|
T Consensus       226 HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p  305 (370)
T 2psq_A          226 HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP  305 (370)
T ss_dssp             CSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             ccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999998665432    2234557889999974 334554 55555   667777767778


Q ss_pred             CCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-h
Q psy6542         222 LHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-S  300 (334)
Q Consensus       222 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~  300 (334)
                      |.+.+......                     .+....          ..+....++..+..  +...|...+|..|+ +
T Consensus       306 ~~~~~~~~~~~---------------------~~~~~~----------~~~~~~~~~~~l~~--li~~~l~~dP~~Rpt~  352 (370)
T 2psq_A          306 YPGIPVEELFK---------------------LLKEGH----------RMDKPANCTNELYM--MMRDCWHAVPSQRPTF  352 (370)
T ss_dssp             STTCCGGGHHH---------------------HHHTTC----------CCCCCTTSCHHHHH--HHHHHTCSSGGGSCCH
T ss_pred             CCCCCHHHHHH---------------------HHhcCC----------CCCCCCCCCHHHHH--HHHHHcCCChhhCcCH
Confidence            75543111000                     000000          00011223344444  67777788888888 8


Q ss_pred             HHHHHHHHHH
Q psy6542         301 QELLGSMARK  310 (334)
Q Consensus       301 ~~lL~~l~~~  310 (334)
                      .++++.+.+.
T Consensus       353 ~ell~~L~~i  362 (370)
T 2psq_A          353 KQLVEDLDRI  362 (370)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888777664

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=4.4e-31  Score=244.31  Aligned_cols=227  Identities=14%  Similarity=0.092  Sum_probs=163.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||+|.+.....   ....+.+|+++++.++||||        +++++++.+.+.+|+|||||
T Consensus        15 ~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~---~~~~~~~E~~~l~~l~hpnI--------v~~~~~~~~~~~~~lv~e~~   83 (321)
T 1tki_A           15 RGEFGIVHRCVETSSKKTYMAKFVKVKGT---DQVLVKKEISILNIARHRNI--------LHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECCCTH---HHHHHHHHHHHHHHSCCTTB--------CCEEEEEEETTEEEEEECCC
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEEecCcc---cHHHHHHHHHHHHhCCCCCC--------CeEeEEEecCCEEEEEEEeC
Confidence            47888999999999999999999985432   33457789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC--CCCEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE--HGHVR  168 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~--~~~vk  168 (334)
                      +|+ +..........+   ....++.++.|++.||.|||+++                |+||||||+|||++.  ++.+|
T Consensus        84 ~g~~L~~~l~~~~~~~---~~~~~~~i~~qi~~al~~lH~~g----------------ivH~Dlkp~NIl~~~~~~~~~k  144 (321)
T 1tki_A           84 SGLDIFERINTSAFEL---NEREIVSYVHQVCEALQFLHSHN----------------IGHFDIRPENIIYQTRRSSTIK  144 (321)
T ss_dssp             CCCBHHHHHTSSSCCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEESSSSCCCEE
T ss_pred             CCCCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CCcCCCCHHHEEEccCCCCCEE
Confidence            987 433322221223   45556777889999999999999                999999999999987  78999


Q ss_pred             EEecccccccCCCCC-CccccCcccccccccccc--CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         169 ISDLGLACDFSKKKP-HASVESDCILHGYIKKLG--GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       169 l~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~~--~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |+|||+++....... ....||+.|++||+....  +..+|+|+   ++|+++. +..||.+.+.....+.+...... .
T Consensus       145 l~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~i~~~~~~-~  222 (321)
T 1tki_A          145 IIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLS-GINPFLAETNQQIIENIMNAEYT-F  222 (321)
T ss_dssp             ECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHHTCCC-C
T ss_pred             EEECCCCeECCCCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHh-CCCCCcCCCHHHHHHHHHcCCCC-C
Confidence            999999997765543 345689999999985433  44566666   5555554 56687665533222222222211 1


Q ss_pred             ccc---cccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQD---LITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~---~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +..   ..+......+..++..||..|++..
T Consensus       223 ~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~  253 (321)
T 1tki_A          223 DEEAFKEISIEAMDFVDRLLVKERKSRMTAS  253 (321)
T ss_dssp             CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             ChhhhccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            111   1111334556666677888887654

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.97  E-value=3.3e-32  Score=247.33  Aligned_cols=186  Identities=16%  Similarity=0.146  Sum_probs=143.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+ .+|+.||||.++.........+.+.+|+++++.++||||        +++++++.+.+.+|+||||+
T Consensus        12 ~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~   82 (288)
T 1ob3_A           12 EGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI--------VKLYDVIHTKKRLVLVFEHL   82 (288)
T ss_dssp             EETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTB--------CCEEEEEECSSCEEEEEECC
T ss_pred             cCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCE--------eeeeeEEccCCeEEEEEEec
Confidence            467889999998 679999999998765544445567789999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      +|++..+.......+   ....+..++.|++.||.|||+++                |+||||||+||+++.++.+||+|
T Consensus        83 ~~~l~~~~~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dlkp~Nil~~~~~~~kl~D  143 (288)
T 1ob3_A           83 DQDLKKLLDVCEGGL---ESVTAKSFLLQLLNGIAYCHDRR----------------VLHRDLKPQNLLINREGELKIAD  143 (288)
T ss_dssp             SEEHHHHHHTSTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTSCEEECC
T ss_pred             CCCHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEEcCCCCEEEeE
Confidence            998544433322233   34445667789999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC--CCccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         172 LGLACDFSKKK--PHASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       172 FGla~~~~~~~--~~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ||+++......  .....||+.|++||+..  . .+..+|+|+   ++|+++. +..||.+.+
T Consensus       144 fg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~-g~~pf~~~~  205 (288)
T 1ob3_A          144 FGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVN-GTPLFPGVS  205 (288)
T ss_dssp             TTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             CccccccCccccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCC
Confidence            99998765432  23456799999999853  2 244566666   5556554 566775543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.97  E-value=5.1e-31  Score=242.46  Aligned_cols=184  Identities=14%  Similarity=-0.002  Sum_probs=141.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHh-cCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNH-LRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~-l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||++...............|+..+.. .+||||        +++++++.+++.+|+||||
T Consensus        67 ~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~i--------v~l~~~~~~~~~~~lv~e~  138 (311)
T 3p1a_A           67 HGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCC--------VRLEQAWEEGGILYLQTEL  138 (311)
T ss_dssp             EETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEEEC
T ss_pred             cCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcE--------EEEEEEEEeCCEEEEEEec
Confidence            4677899999999999999999988765543334444455555554 499999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +.|++..........+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.+||+
T Consensus       139 ~~~~L~~~~~~~~~~l---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~Dikp~NIll~~~~~~kl~  199 (311)
T 3p1a_A          139 CGPSLQQHCEAWGASL---PEAQVWGYLRDTLLALAHLHSQG----------------LVHLDVKPANIFLGPRGRCKLG  199 (311)
T ss_dssp             CCCBHHHHHHHHCSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECGGGCEEEC
T ss_pred             cCCCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EecCCCCHHHEEECCCCCEEEc
Confidence            9888544433332233   45556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC-CccccCccccccccccccCC-cceeeh---hHHHHHcCCCCCC
Q psy6542         171 DLGLACDFSKKKP-HASVESDCILHGYIKKLGGP-FVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       171 DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~~~~-~~~~w~---~~~~~l~~~~~~~  222 (334)
                      |||+++....... ....||+.|++||+....++ .+|+|+   ++|+++.+..+|+
T Consensus       200 DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~~  256 (311)
T 3p1a_A          200 DFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPH  256 (311)
T ss_dssp             CCTTCEECC------CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCCS
T ss_pred             cceeeeecccCCCCcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            9999987765543 34568999999998655554 455555   6778877766553

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.97  E-value=9.5e-31  Score=242.31  Aligned_cols=239  Identities=12%  Similarity=0.029  Sum_probs=168.1

Q ss_pred             CCCceEEEeceeCCCCCc---EEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFP---IQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~---vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++.+.||+|.++.+|+.   ||||+++.... ....+.+.+|+++++.++||||        +++++++.+++.+|+||
T Consensus        59 ~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~  129 (325)
T 3kul_A           59 SGDSGEVCYGRLRVPGQRDVPVAIKALKAGYT-ERQRRDFLSEASIMGQFDHPNI--------IRLEGVVTRGRLAMIVT  129 (325)
T ss_dssp             ETTTEEEEEEEECCTTSCCEEEEEEEECTTCC-HHHHHHHHHHHHHHTTCCCTTB--------CCEEEEECGGGCCEEEE
T ss_pred             eCCCcEEEEEEEecCCCCCceEEEEecCCCCC-HHHHHHHHHHHHHHHhCCCCCC--------CcEEEEEEeCCccEEEe
Confidence            477789999999876665   99999986543 3345678899999999999999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||++|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.+
T Consensus       130 e~~~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~~L~~LH~~~----------------ivH~Dlkp~NIll~~~~~~  190 (325)
T 3kul_A          130 EYMENGSLDTFLRTHDGQF---TIMQLVGMLRGVGAGMRYLSDLG----------------YVHRDLAARNVLVDSNLVC  190 (325)
T ss_dssp             ECCTTCBHHHHHHTTTTCS---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECTTCCE
T ss_pred             eCCCCCcHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeCCCCCcceEEECCCCCE
Confidence            999887 544443332233   45566777889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCC-----CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcc
Q psy6542         168 RISDLGLACDFSKKKP-----HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMD  237 (334)
Q Consensus       168 kl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~  237 (334)
                      ||+|||+++.......     ....+|..|++||+.. ..++ .+|+|+   ++|+++..+..||.+.....        
T Consensus       191 kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--------  262 (325)
T 3kul_A          191 KVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD--------  262 (325)
T ss_dssp             EECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH--------
T ss_pred             EECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH--------
Confidence            9999999987755432     2223466799999853 3344 556666   66777775777774433110        


Q ss_pred             cccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         238 QIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                                       +...+...      ...+....+++.+..  +...|...+|..|+ +.++++.+....
T Consensus       263 -----------------~~~~~~~~------~~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~eil~~L~~l~  312 (325)
T 3kul_A          263 -----------------VISSVEEG------YRLPAPMGCPHALHQ--LMLDCWHKDRAQRPRFSQIVSVLDALI  312 (325)
T ss_dssp             -----------------HHHHHHTT------CCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -----------------HHHHHHcC------CCCCCCCCcCHHHHH--HHHHHccCChhhCcCHHHHHHHHHHHH
Confidence                             00111000      011112234444455  77788888888888 777766666543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.97  E-value=1.3e-30  Score=239.89  Aligned_cols=243  Identities=11%  Similarity=0.069  Sum_probs=164.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+  +|+.||||++..........+.+.+|++++++++||||        +++++++.+.+.+|+||||+
T Consensus        47 ~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e~~  116 (309)
T 3p86_A           47 AGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNI--------VLFMGAVTQPPNLSIVTEYL  116 (309)
T ss_dssp             ECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSTTCCEEEEECC
T ss_pred             cCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCE--------eeEEEEEEECCceEEEEecC
Confidence            477789999976  58899999998777655566678899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+..... .........++.++.|++.||.|||+++              ++|+||||||+|||++.++.+||+
T Consensus       117 ~~~~L~~~l~~~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~--------------~~ivH~Dikp~NIll~~~~~~kL~  181 (309)
T 3p86_A          117 SRGSLYRLLHKSG-AREQLDERRRLSMAYDVAKGMNYLHNRN--------------PPIVHRNLKSPNLLVDKKYTVKVC  181 (309)
T ss_dssp             TTCBHHHHHHSTT-HHHHSCHHHHHHHHHHHHHHHHHHHTSS--------------SCCCCTTCCGGGEEECTTCCEEEC
T ss_pred             CCCcHHHHHhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHcCC--------------CCEECCCCChhhEEEeCCCcEEEC
Confidence            987 544333221 1122355667788889999999999987              459999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      |||+++......  .....||+.|++||+.. . .+..+|+|+   ++|+++.+ ..||.+.+.   .+.          
T Consensus       182 Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg-~~Pf~~~~~---~~~----------  247 (309)
T 3p86_A          182 DFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATL-QQPWGNLNP---AQV----------  247 (309)
T ss_dssp             CCC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHC-CCTTTTSCH---HHH----------
T ss_pred             CCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhC-CCCCCCCCH---HHH----------
Confidence            999998654442  34457899999999853 2 244566666   55666554 556644321   000          


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHhC
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKAG  312 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~~  312 (334)
                              ...+.... .        ..+....+++.+.+  +...|...+|..|+ +.++++.+.....
T Consensus       248 --------~~~~~~~~-~--------~~~~~~~~~~~l~~--li~~~l~~dP~~Rps~~~ll~~L~~~~~  298 (309)
T 3p86_A          248 --------VAAVGFKC-K--------RLEIPRNLNPQVAA--IIEGCWTNEPWKRPSFATIMDLLRPLIK  298 (309)
T ss_dssp             --------HHHHHHSC-C--------CCCCCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred             --------HHHHHhcC-C--------CCCCCccCCHHHHH--HHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence                    00000000 0        00111233444445  78888888999999 7888887776543

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.97  E-value=3.3e-31  Score=262.22  Aligned_cols=229  Identities=18%  Similarity=0.186  Sum_probs=167.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.||+|.++.+|+.||||++.+... .......+.+|+++++.++||||        +++++++.+.+.+|+||||
T Consensus       194 ~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~I--------v~l~~~~~~~~~l~lVmEy  265 (576)
T 2acx_A          194 KGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFV--------VSLAYAYETKDALCLVLTL  265 (576)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCE--------eeEEEEEeeCCEEEEEEEc
Confidence            46788999999999999999999986432 11223457789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++|| +...... ....+   ....++.++.||+.||.|||+++                |+||||||+|||++.+|.+|
T Consensus       266 ~~gg~L~~~l~~~~~~~l---~e~~~~~i~~qIl~aL~yLH~~g----------------IvHrDLKPeNILld~~g~vK  326 (576)
T 2acx_A          266 MNGGDLKFHIYHMGQAGF---PEARAVFYAAEICCGLEDLHRER----------------IVYRDLKPENILLDDHGHIR  326 (576)
T ss_dssp             CCSCBHHHHHHSSSSCCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTSCEE
T ss_pred             CCCCcHHHHHHhcCCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeccCCchheEEEeCCCCeE
Confidence            9988 5433232 21123   44555667779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC-CccccCcccccccccc-ccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhc---ccc
Q psy6542         169 ISDLGLACDFSKKKP-HASVESDCILHGYIKK-LGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFM---DQI  239 (334)
Q Consensus       169 l~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~---~~~  239 (334)
                      |+|||+|+....... ...+||+.|++||+.. ..++.+.|||    ++|++++ +.+||.+.......+.+..   ...
T Consensus       327 L~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLlt-G~~PF~~~~~~~~~~~i~~~i~~~~  405 (576)
T 2acx_A          327 ISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA-GQSPFQQRKKKIKREEVERLVKEVP  405 (576)
T ss_dssp             ECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHH-SSCSSSCSSSCCCHHHHHHHHHHCC
T ss_pred             EEecccceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHh-CCCCCcccccchhHHHHHHHhhccc
Confidence            999999987765543 4468999999999853 3455555666    5566655 6678877653322221111   111


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      ...+..+. ......+...+..||..|+++
T Consensus       406 ~~~p~~~s-~~~~dLI~~lL~~dP~~R~g~  434 (576)
T 2acx_A          406 EEYSERFS-PQARSLCSQLLCKDPAERLGC  434 (576)
T ss_dssp             CCCCTTSC-HHHHHHHHHHTCSSGGGSTTC
T ss_pred             ccCCccCC-HHHHHHHHHhccCCHHHcCCC
Confidence            11222222 245566777778899999864

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.97  E-value=1.9e-31  Score=260.70  Aligned_cols=228  Identities=15%  Similarity=0.156  Sum_probs=161.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.++..||||++++..........+.+|+.+++.++||||        +++++++.+.+.+|+|||||
T Consensus        47 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~lv~e~~  118 (494)
T 3lij_A           47 SGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNI--------MKLYDFFEDKRNYYLVMECY  118 (494)
T ss_dssp             CC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSEEEEEEECC
T ss_pred             cCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCC--------CeEEEEEEeCCEEEEEEecC
Confidence            5788899999999999999999999766533345678889999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC---CC
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH---GH  166 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~---~~  166 (334)
                      .|+ + +.+...  ..+   ....++.++.||+.||.|||+++                |+||||||+|||++..   +.
T Consensus       119 ~~g~L~~~~~~~--~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------ivH~Dlkp~Nil~~~~~~~~~  177 (494)
T 3lij_A          119 KGGELFDEIIHR--MKF---NEVDAAVIIKQVLSGVTYLHKHN----------------IVHRDLKPENLLLESKEKDAL  177 (494)
T ss_dssp             CSCBHHHHHHHH--SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEESCSSTTCC
T ss_pred             CCCcHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ceeccCChhhEEEeCCCCCCc
Confidence            998 3 444322  233   34455667789999999999999                9999999999999764   45


Q ss_pred             EEEEecccccccCCCCC-CccccCccccccccccccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         167 VRISDLGLACDFSKKKP-HASVESDCILHGYIKKLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +||+|||+++....... ...+||+.|++||+....++ .+|+|+   ++|++ .++.+||.+.+.......+...... 
T Consensus       178 ~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~l-l~g~~pf~~~~~~~~~~~i~~~~~~-  255 (494)
T 3lij_A          178 IKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFIL-LAGYPPFGGQTDQEILRKVEKGKYT-  255 (494)
T ss_dssp             EEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHH-HHSSCSSCCSSHHHHHHHHHHTCCC-
T ss_pred             EEEEECCCCeECCCCccccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHhCCCC-
Confidence            99999999987765443 45678999999999655555 455555   45555 5567788766533222222222211 


Q ss_pred             ccccc---ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDL---ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~---~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+...   .+......+..++..+|..|++..
T Consensus       256 ~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~  287 (494)
T 3lij_A          256 FDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQ  287 (494)
T ss_dssp             CCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             CCchhcccCCHHHHHHHHHHCCCChhhCccHH
Confidence            11111   111345566667777888887754

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.97  E-value=2.1e-32  Score=265.58  Aligned_cols=184  Identities=17%  Similarity=0.125  Sum_probs=141.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC------CeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP------NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~------~~~~   85 (334)
                      +|+.+.||+|.+..+|+.||||++..........+.+.+|+.+++.++||||        +++++++...      +.+|
T Consensus        72 ~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI--------v~l~~~~~~~~~~~~~~~~~  143 (464)
T 3ttj_A           72 SGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI--------ISLLNVFTPQKTLEEFQDVY  143 (464)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTB--------CCCSEEECSCCSTTTCCEEE
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCC--------CcEEEEEccCCccccCCeEE
Confidence            4677899999999999999999998765555566788899999999999999        9999999754      4679


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||||++|++......   .+   ....+..++.||+.||.|||+++                |+||||||+|||++.++
T Consensus       144 lv~E~~~~~l~~~~~~---~l---~~~~~~~~~~qil~aL~~lH~~~----------------iiHrDlkp~NIll~~~~  201 (464)
T 3ttj_A          144 LVMELMDANLCQVIQM---EL---DHERMSYLLYQMLCGIKHLHSAG----------------IIHRDLKPSNIVVKSDC  201 (464)
T ss_dssp             EEEECCSEEHHHHHTS---CC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTTS
T ss_pred             EEEeCCCCCHHHHHhh---cC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCChHhEEEeCCC
Confidence            9999999995333222   22   34455667789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCC-CCccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKK-PHASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+|+...... ....+||+.|++||+. ...|+ .+|+|+   ++|+++ ++.+||.+.+
T Consensus       202 ~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell-~g~~pF~g~~  267 (464)
T 3ttj_A          202 TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMV-RHKILFPGRD  267 (464)
T ss_dssp             CEEECCCCCC-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHH-HSSCSSCCSS
T ss_pred             CEEEEEEEeeeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHH-hCCCCCCCCC
Confidence            99999999998776553 3446789999999984 33444 555555   555554 5677887765

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.97  E-value=6.9e-31  Score=243.36  Aligned_cols=229  Identities=17%  Similarity=0.132  Sum_probs=163.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcch----HHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHES----RVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~----~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++.+.||+|.++.+|+.||||+++......    ...+.+.+|+++++.++||||        +++++++.+++.+|+|
T Consensus        21 ~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv   92 (326)
T 2y0a_A           21 SGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNV--------ITLHEVYENKTDVILI   92 (326)
T ss_dssp             CCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEE
T ss_pred             eCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCC--------CcEEEEEEeCCEEEEE
Confidence            5788899999999999999999998765421    124567889999999999999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-  165 (334)
                      |||++|+ +..+.... ..+   ....++.++.|++.||.|||+++                |+||||||+|||++.++ 
T Consensus        93 ~e~~~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~al~~lH~~~----------------ivH~Dlkp~NIll~~~~~  152 (326)
T 2y0a_A           93 LELVAGGELFDFLAEK-ESL---TEEEATEFLKQILNGVYYLHSLQ----------------IAHFDLKPENIMLLDRNV  152 (326)
T ss_dssp             EECCCSCBHHHHHTTS-SCC---BHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEESCSSS
T ss_pred             EEcCCCCCHHHHHHhc-CCc---CHHHHHHHHHHHHHHHHHHHHCC----------------eEcCCCCHHHEEEecCCC
Confidence            9999887 44333221 223   45556677889999999999999                99999999999999887 


Q ss_pred             ---CEEEEecccccccCCCC-CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         166 ---HVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       166 ---~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                         .+||+|||+++...... .....||+.|++||+.. .. ...+|+|+   ++|+++. +..||.+.+.......+..
T Consensus       153 ~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~~~~  231 (326)
T 2y0a_A          153 PKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS-GASPFLGDTKQETLANVSA  231 (326)
T ss_dssp             SSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SCCSSCCSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHH-CcCCCCCCCHHHHHHHHHh
Confidence               79999999998775443 34467899999999853 23 34566666   5555554 5667766542211111111


Q ss_pred             ccccccccc---cccHhHHHHHHHhhccCchhhcCCC
Q psy6542         237 DQIEEVSQD---LITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       237 ~~~~~~~~~---~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ... ..+..   ..+......+..++..||..|++..
T Consensus       232 ~~~-~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  267 (326)
T 2y0a_A          232 VNY-EFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQ  267 (326)
T ss_dssp             TCC-CCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             cCC-CcCccccccCCHHHHHHHHHHccCChhhCCCHH
Confidence            111 01101   1111234456666667888877644

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.97  E-value=4.4e-31  Score=244.79  Aligned_cols=228  Identities=17%  Similarity=0.183  Sum_probs=154.5

Q ss_pred             CCCceEEEeceeC---CCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLK---PLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~---~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++.+.||+|.+.   .+|+.||||++++...  .......+.+|+++++.++||||        +++++++.+++.+|+
T Consensus        27 ~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~l   98 (327)
T 3a62_A           27 KGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFI--------VDLIYAFQTGGKLYL   98 (327)
T ss_dssp             EETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTB--------CCEEEEEECSSCEEE
T ss_pred             eCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCc--------cceeEEEEcCCEEEE
Confidence            4677899999875   7899999999987643  22234467789999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      ||||++|+ +....... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.++
T Consensus        99 v~e~~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~al~~lH~~~----------------ivH~Dlkp~Nill~~~~  158 (327)
T 3a62_A           99 ILEYLSGGELFMQLERE-GIF---MEDTACFYLAEISMALGHLHQKG----------------IIYRDLKPENIMLNHQG  158 (327)
T ss_dssp             EEECCTTEEHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCTTTEEECTTS
T ss_pred             EEeCCCCCcHHHHHHhC-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EEcccCCHHHeEECCCC
Confidence            99999988 43332221 223   34455667779999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCC--CCccccCccccccccc-cccCCc-ceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         166 HVRISDLGLACDFSKKK--PHASVESDCILHGYIK-KLGGPF-VSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~-~~~~~~-~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      .+||+|||+++......  ....+||+.|++||+. ...++. +|+|+   ++|+++. +..||.+.+.......+....
T Consensus       159 ~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~i~~~~  237 (327)
T 3a62_A          159 HVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLT-GAPPFTGENRKKTIDKILKCK  237 (327)
T ss_dssp             CEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHTC
T ss_pred             cEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhCC
Confidence            99999999998654332  3456789999999985 333444 55555   5566555 667887655322222222221


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      . ..+... +......+...+..+|..|++..
T Consensus       238 ~-~~p~~~-~~~~~~li~~~L~~dp~~R~~~~  267 (327)
T 3a62_A          238 L-NLPPYL-TQEARDLLKKLLKRNAASRLGAG  267 (327)
T ss_dssp             C-CCCTTS-CHHHHHHHHHHSCSCGGGSTTSS
T ss_pred             C-CCCCCC-CHHHHHHHHHHHhcCHhhccCCC
Confidence            1 122222 22345667777788999998654

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.1e-31  Score=252.87  Aligned_cols=185  Identities=17%  Similarity=0.174  Sum_probs=142.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC------CeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP------NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~------~~~~   85 (334)
                      +++.+.||+|.+..+|+.||||.+..........+.+.+|+++++.++||||        +++++++...      ..+|
T Consensus        35 ~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI--------v~l~~~~~~~~~~~~~~~~~  106 (367)
T 1cm8_A           35 SGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENV--------IGLLDVFTPDETLDDFTDFY  106 (367)
T ss_dssp             -----CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTB--------CCCSEEECSCSSTTTCCCCE
T ss_pred             ecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCC--------CCceeeEecCCccccCceEE
Confidence            4677899999999999999999998766655566788899999999999999        9999999865      3469


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||||+.+++..+....  .+   ....+..++.||+.||.|||+++                |+||||||+|||++.++
T Consensus       107 lv~e~~~~~L~~~~~~~--~l---~~~~~~~~~~qi~~~L~~LH~~~----------------ivH~Dlkp~NIll~~~~  165 (367)
T 1cm8_A          107 LVMPFMGTDLGKLMKHE--KL---GEDRIQFLVYQMLKGLRYIHAAG----------------IIHRDLKPGNLAVNEDC  165 (367)
T ss_dssp             EEEECCSEEHHHHHHHC--CC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTC
T ss_pred             EEEecCCCCHHHHHhcC--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCcCHHHEEEcCCC
Confidence            99999965565554432  23   34455667789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCCccccCcccccccccc--ccC-Ccceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKK--LGG-PFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~--~~~-~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++..... .....+|..|++||+..  ..+ ..+|+|+  ++++.+.++.+||.+.+
T Consensus       166 ~~kl~Dfg~a~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  230 (367)
T 1cm8_A          166 ELKILDFGLARQADSE-MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSD  230 (367)
T ss_dssp             CEEECCCTTCEECCSS-CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             CEEEEeeecccccccc-cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999976543 34457899999999843  234 4566666  44444455667887655

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.97  E-value=7.4e-31  Score=242.03  Aligned_cols=189  Identities=16%  Similarity=0.165  Sum_probs=143.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||||+++...... ..+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        15 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e~~   85 (317)
T 2pmi_A           15 NGTYATVYKGLNKTTGVYVALKEVKLDSEEG-TPSTAIREISLMKELKHENI--------VRLYDVIHTENKLTLVFEFM   85 (317)
T ss_dssp             ----CEEEEEECSSSCCEEEEEEEECCSTTC-SCHHHHHHHHHHTTCCBTTB--------CCEEEEECCTTEEEEEEECC
T ss_pred             CCCCEEEEEEEECCCCcEEEEEEeecccccc-cHHHHHHHHHHHHhcCCCCc--------ceEEEEEEECCeEEEEEEec
Confidence            5778899999999999999999998655322 23456789999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhh-hh-hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGPKDQISRSKI-NR-YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~l~~l~~~~~-~~-~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|++..+..... .. ........+..++.|++.||.|||+++                |+||||||+|||++.++.+||
T Consensus        86 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~----------------ivH~Dlkp~NIl~~~~~~~kl  149 (317)
T 2pmi_A           86 DNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK----------------ILHRDLKPQNLLINKRGQLKL  149 (317)
T ss_dssp             CCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTCCEEE
T ss_pred             CCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCC----------------eeeCCCChHHeEEcCCCCEEE
Confidence            988433323221 11 011244555667789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||+++......  .....||+.|++||+..  .. ...+|+|+   ++|++++ +..||.+.+
T Consensus       150 ~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~  213 (317)
T 2pmi_A          150 GDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMIT-GKPLFPGTN  213 (317)
T ss_dssp             CCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             CcCccceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCC
Confidence            9999998765432  23456799999999853  23 44566666   5555554 566776654

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.97  E-value=3.3e-31  Score=268.05  Aligned_cols=227  Identities=13%  Similarity=0.081  Sum_probs=171.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.++||+|.++.+|+.||||++++... .......+..|..++..+ +||+|        +++++++.+.+.+|||||
T Consensus       351 ~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i--------~~l~~~~~~~~~~~lV~E  422 (674)
T 3pfq_A          351 KGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFL--------TQLHSCFQTMDRLYFVME  422 (674)
T ss_dssp             BTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTB--------CCEEEECBCSSEEEEEEE
T ss_pred             cCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeE--------EEEEEEEEeCCEEEEEEe
Confidence            57788999999999999999999986432 222334567799999987 68899        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +....... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+|
T Consensus       423 ~~~gg~L~~~l~~~-~~~---~~~~~~~~~~qi~~aL~~LH~~g----------------IiHrDLKp~NILl~~~g~ik  482 (674)
T 3pfq_A          423 YVNGGDLMYHIQQV-GRF---KEPHAVFYAAEIAIGLFFLQSKG----------------IIYRDLKLDNVMLDSEGHIK  482 (674)
T ss_dssp             CCCSCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTS----------------EECCCCCSTTEEECSSSCEE
T ss_pred             CcCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEeccCChhhEEEcCCCcEE
Confidence            99998 43333322 234   34455567779999999999999                99999999999999999999


Q ss_pred             EEecccccccCC--CCCCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSK--KKPHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~--~~~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+|+....  ......+||+.|++||+. ...|+.++|||    ++|+++. +.+||.+.+.....+.+..... .
T Consensus       483 L~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyellt-G~~Pf~~~~~~~~~~~i~~~~~-~  560 (674)
T 3pfq_A          483 IADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA-GQAPFEGEDEDELFQSIMEHNV-A  560 (674)
T ss_dssp             ECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHSSCC-C
T ss_pred             EeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHc-CCCCCCCCCHHHHHHHHHhCCC-C
Confidence            999999986433  334567899999999985 34566666666    5666655 6778887765444444444333 2


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      .+..+. ......+...+..||..|+++
T Consensus       561 ~p~~~s-~~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          561 YPKSMS-KEAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             CCTTSC-HHHHHHHHHHSCSSSTTCTTC
T ss_pred             CCccCC-HHHHHHHHHHccCCHHHCCCC
Confidence            333332 245667777778899999987

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.97  E-value=4.5e-31  Score=258.71  Aligned_cols=228  Identities=17%  Similarity=0.161  Sum_probs=164.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcch-----------HHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHES-----------RVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE   80 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~-----------~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~   80 (334)
                      +++...||+|.++.+++.||||++.+.....           ...+.+.+|+++++.++||||        +++++++.+
T Consensus        46 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~  117 (504)
T 3q5i_A           46 SGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNI--------IKLFDVFED  117 (504)
T ss_dssp             C--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTB--------CCEEEEEEC
T ss_pred             ccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEEc
Confidence            5778899999999999999999998754321           234567889999999999999        999999999


Q ss_pred             CCeEEEEEEccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCc
Q psy6542          81 PNSHYIIGVRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPAN  158 (334)
Q Consensus        81 ~~~~~ivmEy~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~N  158 (334)
                      ++.+|+|||||+|+ + +.+...  ..+   ....++.++.||+.||.|||+++                |+||||||+|
T Consensus       118 ~~~~~lv~e~~~gg~L~~~l~~~--~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------ivH~Dlkp~N  176 (504)
T 3q5i_A          118 KKYFYLVTEFYEGGELFEQIINR--HKF---DECDAANIMKQILSGICYLHKHN----------------IVHRDIKPEN  176 (504)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH--SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGG
T ss_pred             CCEEEEEEecCCCCcHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEeCCCcHHH
Confidence            99999999999988 4 444322  233   44556677789999999999999                9999999999


Q ss_pred             eeeCCCC---CEEEEecccccccCCCC-CCccccCccccccccccccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCc
Q psy6542         159 ILLDEHG---HVRISDLGLACDFSKKK-PHASVESDCILHGYIKKLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSK  230 (334)
Q Consensus       159 iLl~~~~---~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~  230 (334)
                      ||++.++   .+||+|||+++...... .....||+.|++||+....++ .+|+|+   ++|++ .++.+||.+.+....
T Consensus       177 il~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~l-l~g~~pf~~~~~~~~  255 (504)
T 3q5i_A          177 ILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYIL-LCGYPPFGGQNDQDI  255 (504)
T ss_dssp             EEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHH-HHSSCSSCCSSHHHH
T ss_pred             EEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHH-HhCCCCCCCCCHHHH
Confidence            9998876   69999999998776554 345678999999999665555 555565   55555 456778877653322


Q ss_pred             ccchhcccccccccc---cccHhHHHHHHHhhccCchhhcCCC
Q psy6542         231 PELIFMDQIEEVSQD---LITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       231 ~~~i~~~~~~~~~~~---~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...+...... .+..   ..+......+..++..||..|++..
T Consensus       256 ~~~i~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~  297 (504)
T 3q5i_A          256 IKKVEKGKYY-FDFNDWKNISDEAKELIKLMLTYDYNKRCTAE  297 (504)
T ss_dssp             HHHHHHCCCC-CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHHHHcCCCC-CCccccCCCCHHHHHHHHHHcCCChhHCCCHH
Confidence            2222222211 1101   1112345566777778888888754

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.97  E-value=5.2e-31  Score=238.88  Aligned_cols=188  Identities=14%  Similarity=0.159  Sum_probs=134.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+..+|+.||||+++.........+.+.++..+++.++||||        +++++++.+++..|+||||+
T Consensus        17 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i--------v~~~~~~~~~~~~~lv~e~~   88 (290)
T 3fme_A           17 RGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFT--------VTFYGALFREGDVWICMELM   88 (290)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSSEEEEEECC
T ss_pred             CCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeE--------EEEeeeeeccCCEEEEEehh
Confidence            4788899999999999999999998765544445555666667889999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|++..+...............++.++.|++.||.|||++ +                |+||||||+||+++.++.+||+
T Consensus        89 ~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~----------------i~H~dlkp~Nil~~~~~~~kl~  152 (290)
T 3fme_A           89 DTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS----------------VIHRDVKPSNVLINALGQVKMC  152 (290)
T ss_dssp             SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC----------------CCCCCCSGGGCEECTTCCEEBC
T ss_pred             ccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC----------------eecCCCCHHHEEECCCCCEEEe
Confidence            9885433333222222335566677888999999999998 8                9999999999999999999999


Q ss_pred             ecccccccCCCCC-CccccCccccccccc-----cccCC-cceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP-HASVESDCILHGYIK-----KLGGP-FVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~~-~~~~~t~~~~~~~v~-----~~~~~-~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||+++....... ....||+.|++||+.     ...++ .+|+|+   ++|+++. +..||..
T Consensus       153 Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~  215 (290)
T 3fme_A          153 DFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAI-LRFPYDS  215 (290)
T ss_dssp             CC---------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHH-TSCSSCC
T ss_pred             ecCCcccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHH-CCCCccc
Confidence            9999987655543 334689999999983     22344 456666   5566555 4556643

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.97  E-value=6.7e-31  Score=248.25  Aligned_cols=238  Identities=13%  Similarity=0.021  Sum_probs=169.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||||.++... .......+.+|+++|+.++||||        +++++++.+++.+|+||||+
T Consensus       124 ~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~lv~e~~  194 (377)
T 3cbl_A          124 RGNFGEVFSGRLRADNTLVAVKSCRETL-PPDLKAKFLQEARILKQYSHPNI--------VRLIGVCTQKQPIYIVMELV  194 (377)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEECCTTS-CHHHHTTTTHHHHHHTTCCCTTB--------CCEEEEECSSSSCEEEEECC
T ss_pred             cCCCCeEEEEEEecCCeEEEEEEccccC-CHHHHHHHHHHHHHHHhCCCCCE--------EEEEEEEecCCCcEEEEEcC
Confidence            3667899999999999999999998543 33345578889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.+||+
T Consensus       195 ~~g~L~~~l~~~~~~~---~~~~~~~~~~qi~~~l~~LH~~~----------------ivHrDlkp~Nil~~~~~~~kl~  255 (377)
T 3cbl_A          195 QGGDFLTFLRTEGARL---RVKTLLQMVGDAAAGMEYLESKC----------------CIHRDLAARNCLVTEKNVLKIS  255 (377)
T ss_dssp             TTCBHHHHHHHHGGGC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECTTCCEEEC
T ss_pred             CCCCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cCCcccCHHHEEEcCCCcEEEC
Confidence            987 433333322223   45556778889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCC----ccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         171 DLGLACDFSKKKPH----ASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       171 DFGla~~~~~~~~~----~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |||+++........    ...++..|++||+..  ..+..+|+|+   ++|+++..+..||.+.+...            
T Consensus       256 DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~------------  323 (377)
T 3cbl_A          256 DFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ------------  323 (377)
T ss_dssp             CGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH------------
T ss_pred             cCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH------------
Confidence            99999865543221    122466799999853  2244566666   77777776777775433110            


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                   +...+...  .++.    ....+++.+.+  +...|...+|..|| +.++++.+...
T Consensus       324 -------------~~~~~~~~--~~~~----~~~~~~~~l~~--li~~cl~~dP~~Rps~~~i~~~L~~i  372 (377)
T 3cbl_A          324 -------------TREFVEKG--GRLP----CPELCPDAVFR--LMEQCWAYEPGQRPSFSTIYQELQSI  372 (377)
T ss_dssp             -------------HHHHHHTT--CCCC----CCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -------------HHHHHHcC--CCCC----CCCCCCHHHHH--HHHHHcCCCchhCcCHHHHHHHHHHH
Confidence                         00001000  0011    11233444555  66777778888888 77777766553

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=245.97  Aligned_cols=185  Identities=17%  Similarity=0.179  Sum_probs=141.9

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++.+.||+|.+..+|+.||||+++....  ...+.+.+|+++++.++||||        +++++++.+.+.+|+||||
T Consensus        98 G~G~~g~Vy~a~~~~~g~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~hpnI--------v~~~~~~~~~~~~~lv~E~  167 (373)
T 2x4f_A           98 GGGRFGQVHKCEETATGLKLAAKIIKTRGM--KDKEEVKNEISVMNQLDHANL--------IQLYDAFESKNDIVLVMEY  167 (373)
T ss_dssp             C-----CEEEEEETTTCCEEEEEEEECCSH--HHHHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             ecCcCEEEEEEEEcCCCcEEEEEEEccccc--ccHHHHHHHHHHHHhCCCCCC--------CeEEEEEEECCEEEEEEeC
Confidence            356778999999999999999999986543  234568889999999999999        9999999999999999999


Q ss_pred             cCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee--CCCCC
Q psy6542          91 QSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL--DEHGH  166 (334)
Q Consensus        91 ~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl--~~~~~  166 (334)
                      ++|+ + +.+... ...+   .....+.++.||+.||.|||+++                |+||||||+|||+  +.++.
T Consensus       168 ~~~~~L~~~l~~~-~~~l---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~Dlkp~NIll~~~~~~~  227 (373)
T 2x4f_A          168 VDGGELFDRIIDE-SYNL---TELDTILFMKQICEGIRHMHQMY----------------ILHLDLKPENILCVNRDAKQ  227 (373)
T ss_dssp             CTTCEEHHHHHHT-GGGC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEEEETTTTE
T ss_pred             CCCCcHHHHHHhc-CCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccccCCHHHEEEecCCCCc
Confidence            9987 4 444332 2223   34445667789999999999999                9999999999999  66788


Q ss_pred             EEEEecccccccCCCC-CCccccCccccccccccc-cCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK-PHASVESDCILHGYIKKL-GGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~-~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +||+|||+++...... .....||+.|++||+... .++ .+|+|+   ++|+++. +..||.+.+
T Consensus       228 ~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ellt-g~~pf~~~~  292 (373)
T 2x4f_A          228 IKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLS-GLSPFLGDN  292 (373)
T ss_dssp             EEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHH-SSCTTCCSS
T ss_pred             EEEEeCCCceecCCccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHh-CCCCCCCCC
Confidence            9999999999776544 334568999999998543 334 566666   5555555 566776654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.97  E-value=5.5e-31  Score=256.18  Aligned_cols=227  Identities=23%  Similarity=0.200  Sum_probs=167.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||++..... .......+.+|+++++.++||||        +++++++.+.+.+|+||||
T Consensus        26 ~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnI--------v~l~~~~~~~~~~~lv~E~   97 (476)
T 2y94_A           26 VGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHI--------IKLYQVISTPSDIFMVMEY   97 (476)
T ss_dssp             CCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCC--------CcEEEEEEECCEEEEEEeC
Confidence            46778999999999999999999986433 11234567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.++.+||
T Consensus        98 ~~gg~L~~~l~~~-~~l---~~~~~~~i~~qi~~aL~~LH~~g----------------ivHrDLkp~NIll~~~~~vkL  157 (476)
T 2y94_A           98 VSGGELFDYICKN-GRL---DEKESRRLFQQILSGVDYCHRHM----------------VVHRDLKPENVLLDAHMNAKI  157 (476)
T ss_dssp             CSSEEHHHHTTSS-SSC---CHHHHHHHHHHHHHHHHHHHTTT----------------EECSCCSGGGEEECTTCCEEE
T ss_pred             CCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CCcccccHHHEEEecCCCeEE
Confidence            9888 43332221 223   44556677789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-CCccccCcccccccccccc---CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDFSKKK-PHASVESDCILHGYIKKLG---GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~~---~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||+++...... ....+||+.|++||+....   +..+|+|+   ++|++++ +..||.+.+.......+.... ...
T Consensus       158 ~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~-~~~  235 (476)
T 2y94_A          158 ADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLC-GTLPFDDDHVPTLFKKICDGI-FYT  235 (476)
T ss_dssp             CCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHH-SSCSSCCSSSHHHHHHHHTTC-CCC
T ss_pred             EeccchhhccccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC-cCC
Confidence            9999999776543 3456789999999985432   34566677   5556555 667887655332333232222 222


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      +.... ......+...+..||..|.+.
T Consensus       236 p~~~s-~~~~~Li~~~L~~dP~~Rpt~  261 (476)
T 2y94_A          236 PQYLN-PSVISLLKHMLQVDPMKRATI  261 (476)
T ss_dssp             CTTCC-HHHHHHHHHHTCSSTTTSCCH
T ss_pred             CccCC-HHHHHHHHHHcCCCchhCcCH
Confidence            22222 234556666777889888764

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.97  E-value=1.6e-31  Score=258.00  Aligned_cols=227  Identities=17%  Similarity=0.154  Sum_probs=155.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||+++.... .......+.+|+.+++.++||||        +++++++.+++.+|+||||
T Consensus       158 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------v~l~~~~~~~~~~~lv~e~  229 (446)
T 4ejn_A          158 KGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFL--------TALKYSFQTHDRLCFVMEY  229 (446)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTS--------CCEEEEEEETTEEEEEECC
T ss_pred             eCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeE--------eeEEEEEeeCCEEEEEEee
Confidence            46778999999999999999999986432 22234466789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++|+ +....... ..+   ....+..++.||+.||.|||+ ++                |+||||||+|||++.++.+|
T Consensus       230 ~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~aL~~LH~~~g----------------iiHrDlkp~NIll~~~~~~k  289 (446)
T 4ejn_A          230 ANGGELFFHLSRE-RVF---SEDRARFYGAEIVSALDYLHSEKN----------------VVYRDLKLENLMLDKDGHIK  289 (446)
T ss_dssp             CSSCBHHHHHHHH-SCC---CHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCCCCGGGEEECSSSCEE
T ss_pred             CCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHhhcCC----------------EEECCCCHHHEEECCCCCEE
Confidence            9998 43332221 233   445556677799999999998 88                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+|+......  ....+||+.|++||+.. ..++ .+|+|+   ++|+++. +..||.+.+.....+.+...... 
T Consensus       290 l~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~Pf~~~~~~~~~~~i~~~~~~-  367 (446)
T 4ejn_A          290 ITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHEKLFELILMEEIR-  367 (446)
T ss_dssp             ECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCC-
T ss_pred             EccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhh-CCCCCCCCCHHHHHHHHHhCCCC-
Confidence            99999998643332  34567899999999853 3344 455555   5566655 66788666533333333332221 


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTN  269 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~  269 (334)
                      .+.... ......+..++..||..|+++
T Consensus       368 ~p~~~~-~~~~~li~~~L~~dP~~R~~~  394 (446)
T 4ejn_A          368 FPRTLG-PEAKSLLSGLLKKDPKQRLGG  394 (446)
T ss_dssp             CCTTSC-HHHHHHHHHHTCSSTTTSTTC
T ss_pred             CCccCC-HHHHHHHHHHcccCHHHhCCC
Confidence            222222 234456666667788887743

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.97  E-value=3.7e-30  Score=237.27  Aligned_cols=180  Identities=17%  Similarity=0.131  Sum_probs=139.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC---------
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN---------   82 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~---------   82 (334)
                      +++.+.||+|.++.+|+.||||+++....+ ...+.+.+|+++++.++||||        +++++++.+..         
T Consensus        16 ~G~~g~V~~a~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~~~~~~~   86 (332)
T 3qd2_B           16 RGGFGVVFEAKNKVDDCNYAIKRIRLPNRE-LAREKVMREVKALAKLEHPGI--------VRYFNAWLETPPEKWQEEMD   86 (332)
T ss_dssp             CC-CSEEEEEEETTTCCEEEEEEEECCSTT-THHHHHHHHHHHHTSCCCTTB--------CCEEEEEEECCSCHHHHHHH
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEEeecCCch-hHHHHHHHHHHHHHhCCCCCE--------eeEEEEEEEeccchhhhhhh
Confidence            578889999999999999999999865532 245678899999999999999        99999886443         


Q ss_pred             ------------------------------------------------eEEEEEEccCCC-hhHHhhhhhhhhhHHHHHH
Q psy6542          83 ------------------------------------------------SHYIIGVRQSGP-KDQISRSKINRYHKKLRKC  113 (334)
Q Consensus        83 ------------------------------------------------~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~  113 (334)
                                                                      .+|+|||||+|+ +..+.... ..........
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~  165 (332)
T 3qd2_B           87 EIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRR-CSLEDREHGV  165 (332)
T ss_dssp             C--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTC-CSGGGSCHHH
T ss_pred             hhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcc-cCccchhhHH
Confidence                                                            389999999998 44433332 1223334445


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCC-----------
Q psy6542         114 FIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKK-----------  182 (334)
Q Consensus       114 ~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~-----------  182 (334)
                      ++.++.|++.||.|||+++                |+||||||+|||++.++.+||+|||+++......           
T Consensus       166 ~~~i~~qi~~aL~~LH~~~----------------ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~  229 (332)
T 3qd2_B          166 CLHIFIQIAEAVEFLHSKG----------------LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPA  229 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTCCEEECCCTTCEECSCC------------
T ss_pred             HHHHHHHHHHHHHHHHhCC----------------eeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccc
Confidence            6778889999999999999                9999999999999999999999999999776542           


Q ss_pred             ---CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcC
Q psy6542         183 ---PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFP  217 (334)
Q Consensus       183 ---~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~  217 (334)
                         .....||+.|++||+.. .. ...+|+|+   ++|+++++
T Consensus       230 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~  272 (332)
T 3qd2_B          230 YATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYS  272 (332)
T ss_dssp             --CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSC
T ss_pred             cccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHc
Confidence               23346899999999843 23 44566666   66777653

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.97  E-value=6.6e-31  Score=256.34  Aligned_cols=228  Identities=16%  Similarity=0.207  Sum_probs=164.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.++.+|+.||||++.+..........+.+|+++++.++||||        +++++++.+.+.+|+|||||
T Consensus        32 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~lv~e~~  103 (486)
T 3mwu_A           32 KGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNI--------MKLFEILEDSSSFYIVGELY  103 (486)
T ss_dssp             CCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEECCC
T ss_pred             ecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCc--------CeEEEEEEcCCEEEEEEEcC
Confidence            5788899999999999999999997544322234567889999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC---CCCC
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD---EHGH  166 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~---~~~~  166 (334)
                      .|+ + +.+...  ..+   ....+..++.||+.||.|||+++                |+||||||+|||++   .++.
T Consensus       104 ~~~~L~~~~~~~--~~~---~~~~~~~i~~qi~~al~~lH~~~----------------ivH~Dlkp~Nil~~~~~~~~~  162 (486)
T 3mwu_A          104 TGGELFDEIIKR--KRF---SEHDAARIIKQVFSGITYMHKHN----------------IVHRDLKPENILLESKEKDCD  162 (486)
T ss_dssp             CSCBHHHHHHHH--SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEESSSSTTCC
T ss_pred             CCCcHHHHHHhc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEeccCchHHEEEecCCCCCC
Confidence            988 3 444332  233   44556677789999999999999                99999999999995   4567


Q ss_pred             EEEEecccccccCCCC-CCccccCccccccccccccCCc-ceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         167 VRISDLGLACDFSKKK-PHASVESDCILHGYIKKLGGPF-VSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       167 vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~-~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +||+|||+++...... .....||+.|++||+....++. +|+|+   ++|++ .++.+||.+.+.......+...... 
T Consensus       163 ~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~l-l~g~~pf~~~~~~~~~~~i~~~~~~-  240 (486)
T 3mwu_A          163 IKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYIL-LSGTPPFYGKNEYDILKRVETGKYA-  240 (486)
T ss_dssp             EEECSCSCTTTBCCC----CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHH-HHSSCSSCCSSHHHHHHHHHHTCCC-
T ss_pred             EEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHhCCCC-
Confidence            9999999998765544 3446789999999997655654 55555   45555 4566788776532222222222111 


Q ss_pred             ccccc---ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDL---ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~---~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+...   .+......+..++..+|..|++..
T Consensus       241 ~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~  272 (486)
T 3mwu_A          241 FDLPQWRTISDDAKDLIRKMLTFHPSLRITAT  272 (486)
T ss_dssp             SCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             CCCcccCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            11111   111345667777778888888754

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=240.19  Aligned_cols=188  Identities=15%  Similarity=0.167  Sum_probs=144.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC--eEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN--SHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~--~~~ivmE   89 (334)
                      +++.+.||+|.+..+|+.||||+++...... ..+.+.+|+++++.++||||        +++++++...+  .+|+|||
T Consensus        19 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~lv~e   89 (319)
T 4euu_A           19 QGATANVFRGRHKKTGDLFAIKVFNNISFLR-PVDVQMREFEVLKKLNHKNI--------VKLFAIEEETTTRHKVLIME   89 (319)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEECGGGGGS-CHHHHHHHHHHHHHCCCTTB--------CCEEEEEECTTTCCEEEEEE
T ss_pred             CCCCeEEEEEEECCCCcEEEEEEeccccccc-hHHHHHHHHHHHHhcCCCCc--------ceEEEEeecCCCceEEEEEe
Confidence            4788899999999999999999998544322 23456789999999999999        99999988654  7899999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee----CCC
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL----DEH  164 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl----~~~  164 (334)
                      |++|+ +..+....... .......++.++.|++.||.|||+++                |+||||||+|||+    +.+
T Consensus        90 ~~~~~~L~~~l~~~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~----------------ivH~Dlkp~NIll~~~~~~~  152 (319)
T 4euu_A           90 FCPCGSLYTVLEEPSNA-YGLPESEFLIVLRDVVGGMNHLRENG----------------IVHRNIKPGNIMRVIGEDGQ  152 (319)
T ss_dssp             CCTTCBHHHHHHSGGGT-TCCCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEEECTTSC
T ss_pred             CCCCCCHHHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHHCC----------------EecCCCCHHHEEEeccCCCC
Confidence            99887 54443332211 11355666778889999999999999                9999999999999    778


Q ss_pred             CCEEEEecccccccCCCCC-CccccCcccccccccc---------cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKKP-HASVESDCILHGYIKK---------LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~---------~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.+||+|||+++....... ....||+.|++||+..         .. +..+|+|+   ++|+++. +..||....
T Consensus       153 ~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~  227 (319)
T 4euu_A          153 SVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT-GSLPFRPFE  227 (319)
T ss_dssp             EEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHH-SSCSEECTT
T ss_pred             ceEEEccCCCceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCC
Confidence            8899999999987765543 3456899999999842         23 34566666   5566655 566775443

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.97  E-value=1.9e-30  Score=240.12  Aligned_cols=229  Identities=18%  Similarity=0.104  Sum_probs=159.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.++.+|+.||||++....... ..+.+.+|+.+++.++||||        +++++++.+++..|+||||+
T Consensus        17 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~hpnI--------v~~~~~~~~~~~~~lv~e~~   87 (323)
T 3tki_A           17 EGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKMLNHENV--------VKFYGHRREGNIQYLFLEYC   87 (323)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEEECC
T ss_pred             cCCCEEEEEEEECCCCcEEEEEEEEcccccc-hHHHHHHHHHHHHhCCCCCC--------CeEEEEEecCCeEEEEEEcC
Confidence            4678899999999999999999998655422 33567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+.... ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.+||+
T Consensus        88 ~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~aL~~LH~~g----------------ivH~Dlkp~NIll~~~~~~kl~  147 (323)
T 3tki_A           88 SGGELFDRIEPD-IGM---PEPDAQRFFHQLMAGVVYLHGIG----------------ITHRDIKPENLLLDERDNLKIS  147 (323)
T ss_dssp             TTEEGGGGSBTT-TBC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECTTCCEEEC
T ss_pred             CCCcHHHHHhhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccccchHHEEEeCCCCEEEE
Confidence            987 43332221 123   45556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC----CCccccCcccccccccccc--CC-cceeeh---hHHHHHcCCCCCCCCCCCCCcc-cchhcccc
Q psy6542         171 DLGLACDFSKKK----PHASVESDCILHGYIKKLG--GP-FVSAWQ---TRYAKLFPNRLELHPESGQSKP-ELIFMDQI  239 (334)
Q Consensus       171 DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~~--~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~-~~i~~~~~  239 (334)
                      |||+++.+....    .....||+.|++||+....  ++ .+|+|+   ++|+++. +..||...+..... ........
T Consensus       148 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~~~~~~~~  226 (323)
T 3tki_A          148 DFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLA-GELPWDQPSDSCQEYSDWKEKKT  226 (323)
T ss_dssp             CCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHH-SSCSCSSSCTTSHHHHHHHTTCT
T ss_pred             EeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHh-CCCCCCCCchHHHHHHHHhcccc
Confidence            999998654322    2346789999999985322  23 466666   5555555 66677665432111 11111111


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...+....+......+..++..||..|++..
T Consensus       227 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~  257 (323)
T 3tki_A          227 YLNPWKKIDSAPLALLHKILVENPSARITIP  257 (323)
T ss_dssp             TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             cCCccccCCHHHHHHHHHHccCChhhCcCHH
Confidence            1000011111334556666677787777643

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.97  E-value=5e-31  Score=247.85  Aligned_cols=227  Identities=17%  Similarity=0.114  Sum_probs=152.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||||++......   .+.+.+|+.+++.++||||        +++++++.+++.+|+||||+
T Consensus        30 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~lv~e~~   98 (361)
T 3uc3_A           30 SGNFGVARLMRDKLTKELVAVKYIERGAAI---DENVQREIINHRSLRHPNI--------VRFKEVILTPTHLAIIMEYA   98 (361)
T ss_dssp             SSTTSSEEEEEETTTCCEEEEEEEESSTTS---CHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEEECC
T ss_pred             cCCCEEEEEEEECCCCcEEEEEEEecCccc---cHHHHHHHHHHHhCCCCCC--------CcEEEEEeeCCEEEEEEEeC
Confidence            577789999999999999999999865442   2456789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC--EE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH--VR  168 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~--vk  168 (334)
                      .|+ +....... ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.  +|
T Consensus        99 ~~~~L~~~l~~~-~~~---~~~~~~~i~~ql~~~L~~LH~~~----------------ivH~Dlkp~Nill~~~~~~~~k  158 (361)
T 3uc3_A           99 SGGELYERICNA-GRF---SEDEARFFFQQLLSGVSYCHSMQ----------------ICHRDLKLENTLLDGSPAPRLK  158 (361)
T ss_dssp             CSCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCSCCCCGGGEEECSSSSCCEE
T ss_pred             CCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEEcCCCCceEE
Confidence            887 43332221 233   44556677789999999999999                999999999999988765  99


Q ss_pred             EEecccccccCCC-CCCccccCcccccccccc-ccC-Cc-ceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcc---c
Q psy6542         169 ISDLGLACDFSKK-KPHASVESDCILHGYIKK-LGG-PF-VSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMD---Q  238 (334)
Q Consensus       169 l~DFGla~~~~~~-~~~~~~~t~~~~~~~v~~-~~~-~~-~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~---~  238 (334)
                      |+|||+++..... ......||+.|++||+.. ..+ +. +|+|+   ++|+++ ++..||.+.........+...   .
T Consensus       159 l~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell-~g~~Pf~~~~~~~~~~~~~~~~~~~  237 (361)
T 3uc3_A          159 ICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVML-VGAYPFEDPEEPRDYRKTIQRILSV  237 (361)
T ss_dssp             ECCCCCC---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHH-HSSCSCC----CCCHHHHHHHHHTT
T ss_pred             EeecCccccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHH-hCCCCCCCCccHHHHHHHHHHHhcC
Confidence            9999999854333 234567899999999853 233 34 57777   555554 466688765543322221111   1


Q ss_pred             cccccccc-ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         239 IEEVSQDL-ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       239 ~~~~~~~~-~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ....+... .+......+...+..+|..|++..
T Consensus       238 ~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  270 (361)
T 3uc3_A          238 KYSIPDDIRISPECCHLISRIFVADPATRISIP  270 (361)
T ss_dssp             CCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHH
T ss_pred             CCCCCCcCCCCHHHHHHHHHHccCChhHCcCHH
Confidence            11111111 111334566666677888887654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.97  E-value=1.6e-30  Score=240.41  Aligned_cols=184  Identities=17%  Similarity=0.151  Sum_probs=146.6

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++.+.||+|.++.+|+.||||++......  ..+.+.+|+.+++.++||||        +++++++...+.+|+||||
T Consensus        54 g~G~~g~V~~a~~~~~g~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~lv~e~  123 (321)
T 2c30_A           54 GEGSTGIVCLAREKHSGRQVAVKMMDLRKQQ--RRELLFNEVVIMRDYQHFNV--------VEMYKSYLVGEELWVLMEF  123 (321)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEEEEETTTCC--SHHHHHHHHHHHTTCCCTTB--------CCEEEEEEETTEEEEEECC
T ss_pred             ccCCCeEEEEEEECCCCcEEEEEEEeccchh--HHHHHHHHHHHHHhCCCCCc--------ceEEEEEEECCEEEEEEec
Confidence            3578889999999999999999999865543  23457789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+....  .+   ....+..++.|++.||.|||+.+                |+||||||+||+++.++.+||
T Consensus       124 ~~~~~L~~~l~~~--~l---~~~~~~~i~~qi~~~L~~LH~~~----------------ivH~Dlkp~NIll~~~~~~kl  182 (321)
T 2c30_A          124 LQGGALTDIVSQV--RL---NEEQIATVCEAVLQALAYLHAQG----------------VIHRDIKSDSILLTLDGRVKL  182 (321)
T ss_dssp             CCSCBHHHHHTTC--CC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTCCEEE
T ss_pred             CCCCCHHHHHHhc--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEECCCCcEEE
Confidence            9988 54443321  22   45556777889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||+++......  .....||+.|++||+... . ...+|+|+   ++|+++. +..||.+.+
T Consensus       183 ~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~pf~~~~  245 (321)
T 2c30_A          183 SDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVD-GEPPYFSDS  245 (321)
T ss_dssp             CCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCTTTTSC
T ss_pred             eeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCC
Confidence            9999998765543  344578999999998532 2 44566666   5666655 556765543

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.97  E-value=2e-31  Score=251.32  Aligned_cols=184  Identities=17%  Similarity=0.114  Sum_probs=137.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC------eEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN------SHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~------~~~   85 (334)
                      +++.+.||+|.+..+|+.||||++..........+.+.+|+.+++.++||||        +++++++...+      .+|
T Consensus        35 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~~~~~~~  106 (371)
T 2xrw_A           35 SGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI--------IGLLNVFTPQKSLEEFQDVY  106 (371)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSCCSTTTCCEEE
T ss_pred             ecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCc--------cceEEeeccccccccccceE
Confidence            4778899999999999999999998766555566778899999999999999        99999998654      789


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||||++|++......   .+   ....+..++.|++.||.|||+++                |+||||||+|||++.++
T Consensus       107 lv~e~~~~~l~~~~~~---~~---~~~~~~~i~~qi~~al~~lH~~~----------------ivH~Dlkp~NIl~~~~~  164 (371)
T 2xrw_A          107 IVMELMDANLCQVIQM---EL---DHERMSYLLYQMLCGIKHLHSAG----------------IIHRDLKPSNIVVKSDC  164 (371)
T ss_dssp             EEEECCSEEHHHHHHS---CC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTS
T ss_pred             EEEEcCCCCHHHHHhh---cc---CHHHHHHHHHHHHHHHHHHHHCC----------------eecccCCHHHEEEcCCC
Confidence            9999999985333222   22   44555677789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCC-CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++...... .....||+.|++||+.. .. ...+|+|+   ++|+++. +..||.+.+
T Consensus       165 ~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~  230 (371)
T 2xrw_A          165 TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIK-GGVLFPGTD  230 (371)
T ss_dssp             CEEECCCCC----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             CEEEEEeecccccccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHh-CCCCCCCCC
Confidence            99999999998765543 23457899999999843 23 44566666   5555554 566876654

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.97  E-value=1.8e-30  Score=240.44  Aligned_cols=183  Identities=13%  Similarity=0.064  Sum_probs=143.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+..+|+.||||++.....    ...+.+|+++++.+ +||||        +++++++..++..|+||||
T Consensus        19 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~E~~~l~~l~~h~~i--------~~~~~~~~~~~~~~lv~e~   86 (330)
T 2izr_A           19 CGNFGELRLGKNLYTNEYVAIKLEPMKSR----APQLHLEYRFYKQLGSGDGI--------PQVYYFGPCGKYNAMVLEL   86 (330)
T ss_dssp             C-CTTSEEEEEETTTTEEEEEEEEETTCS----SCCHHHHHHHHHHHCSCTTS--------CCEEEEEEETTEEEEEEEC
T ss_pred             ccCCceEEEEEECCCCcEEEEEEeccccc----hHHHHHHHHHHHHhhCCCCC--------CEEEEEEecCCccEEEEEe
Confidence            56778999999999999999999986543    24577899999999 99999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC----
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH----  166 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~----  166 (334)
                      +.|++..+.......+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.    
T Consensus        87 ~~~~L~~~~~~~~~~~---~~~~~~~i~~qi~~~l~~LH~~~----------------iiHrDlkp~Nill~~~~~~~~~  147 (330)
T 2izr_A           87 LGPSLEDLFDLCDRTF---SLKTVLMIAIQLISRMEYVHSKN----------------LIYRDVKPENFLIGRPGNKTQQ  147 (330)
T ss_dssp             CCCBHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECCGGGTCTT
T ss_pred             CCCCHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeccCCCHHHeeeccCCCCCCc
Confidence            9555544434322233   45566777889999999999999                999999999999999887    


Q ss_pred             -EEEEecccccccCCCCC---------CccccCcccccccccc-ccCCc-ceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 -VRISDLGLACDFSKKKP---------HASVESDCILHGYIKK-LGGPF-VSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 -vkl~DFGla~~~~~~~~---------~~~~~t~~~~~~~v~~-~~~~~-~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                       +||+|||+++.......         ....||+.|++||+.. ..++. +|+|+   ++|+++ .+..||.+.+
T Consensus       148 ~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell-~g~~Pf~~~~  221 (330)
T 2izr_A          148 VIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFL-RGSLPWQGLK  221 (330)
T ss_dssp             SEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHH-HSSCTTTTCC
T ss_pred             eEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHh-cCCCCccccc
Confidence             99999999987654332         3567899999999853 33454 45555   555655 4667876654

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.97  E-value=1.2e-31  Score=248.12  Aligned_cols=186  Identities=18%  Similarity=0.123  Sum_probs=138.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||||+++...... ....+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        12 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~   82 (324)
T 3mtl_A           12 EGTYATVYKGKSKLTDNLVALKEIRLEHEEG-APCTAIREVSLLKDLKHANI--------VTLHDIIHTEKSLTLVFEYL   82 (324)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEECC-------CCCCCCCHHHHSCCCCTTB--------CCEEEEEECSSCEEEEEECC
T ss_pred             CCCCEEEEEEEECCCCcEEEEEEEecccccc-cchhHHHHHHHHHhcCCCCC--------CeeeeEEeeCCEEEEEeccc
Confidence            5788999999999999999999997654322 22344569999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      +|++..........+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.+||+|
T Consensus        83 ~~~l~~~~~~~~~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivH~Dikp~NIl~~~~~~~kl~D  143 (324)
T 3mtl_A           83 DKDLKQYLDDCGNII---NMHNVKLFLFQLLRGLAYCHRQK----------------VLHRDLKPQNLLINERGELKLAD  143 (324)
T ss_dssp             SEEHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EEESSCCGGGEEECTTCCEEECS
T ss_pred             ccCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccCCCcCHHHEEECCCCCEEEcc
Confidence            988544333322223   44455667789999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC--CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         172 LGLACDFSKKK--PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       172 FGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ||+++......  .....||+.|++||+..  .. ...+|+|+   ++|+++. +..||.+.+
T Consensus       144 fg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~-g~~pf~~~~  205 (324)
T 3mtl_A          144 FGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMAT-GRPLFPGST  205 (324)
T ss_dssp             SSEEECC------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             CcccccccCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCC
Confidence            99998665433  23456799999999853  23 44566666   5556555 566876654

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.97  E-value=8.1e-31  Score=240.28  Aligned_cols=188  Identities=16%  Similarity=0.133  Sum_probs=143.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---chHHhhhHHHHHHHHHhcC---CCCcccccccceeeEEEEeecCC---
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---ESRVAKWRPYIQEIFNHLR---NEPFKKCVLLFKMNLYKVTSEPN---   82 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~~~~~~~~~~E~~il~~l~---h~~i~~~~~~~~v~~~~~~~~~~---   82 (334)
                      +++...||+|.++.+|+.||||+++....   .......+.+|+++++.++   ||||        +++++++....   
T Consensus        19 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni--------v~~~~~~~~~~~~~   90 (308)
T 3g33_A           19 VGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNV--------VRLMDVCATSRTDR   90 (308)
T ss_dssp             CSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTB--------CCEEEEEEECCSSS
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCe--------EEeeeeeeccCCCC
Confidence            57888999999999999999999985442   1222334566887777665   9999        99999998654   


Q ss_pred             --eEEEEEEccCCChhHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          83 --SHYIIGVRQSGPKDQISRSK-INRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        83 --~~~ivmEy~~g~l~~l~~~~-~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                        .+++||||++|++..+.... ...+   ....+..++.|++.||.|||+++                |+||||||+||
T Consensus        91 ~~~~~lv~e~~~~~L~~~~~~~~~~~~---~~~~~~~i~~qi~~al~~lH~~~----------------ivH~Dlkp~Ni  151 (308)
T 3g33_A           91 EIKVTLVFEHVDQDLRTYLDKAPPPGL---PAETIKDLMRQFLRGLDFLHANC----------------IVHRDLKPENI  151 (308)
T ss_dssp             EEEEEEEEECCCCBHHHHHHTCCTTCS---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCTTTE
T ss_pred             ceeEEEEehhhhcCHHHHHhhccCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHE
Confidence              58999999998854433322 1123   45566777889999999999999                99999999999


Q ss_pred             eeCCCCCEEEEecccccccCCCCC-CccccCccccccccc-ccc-CCcceeeh--hHHHHHcCCCCCCCCCC
Q psy6542         160 LLDEHGHVRISDLGLACDFSKKKP-HASVESDCILHGYIK-KLG-GPFVSAWQ--TRYAKLFPNRLELHPES  226 (334)
Q Consensus       160 Ll~~~~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~-~~~-~~~~~~w~--~~~~~l~~~~~~~~~~~  226 (334)
                      |++.++.+||+|||+++....... ....||+.|++||+. ... ...+|+|+  ++.+.+.++.+||.+.+
T Consensus       152 l~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  223 (308)
T 3g33_A          152 LVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS  223 (308)
T ss_dssp             EECTTSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSS
T ss_pred             EEcCCCCEEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999987765443 446789999999984 333 44566666  44455567777876654

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.97  E-value=2.5e-31  Score=243.71  Aligned_cols=186  Identities=18%  Similarity=0.165  Sum_probs=144.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+..+|+.||||++..........+.+.+|+++++.++||||        +++++++.+.+.+|+||||+
T Consensus        13 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   84 (311)
T 4agu_A           13 EGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNL--------VNLLEVFRRKRRLHLVFEYC   84 (311)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             ecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCc--------cchhheeecCCeEEEEEEeC
Confidence            5788899999999999999999998776666667788899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+.... ..+   ....+..++.|++.||.|||+++                |+||||||+||+++.++.+||+
T Consensus        85 ~~~~l~~~~~~~-~~~---~~~~~~~i~~~l~~~l~~lH~~~----------------ivH~dlkp~Nil~~~~~~~kl~  144 (311)
T 4agu_A           85 DHTVLHELDRYQ-RGV---PEHLVKSITWQTLQAVNFCHKHN----------------CIHRDVKPENILITKHSVIKLC  144 (311)
T ss_dssp             SEEHHHHHHHTS-SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTSCEEEC
T ss_pred             CCchHHHHHhhh-cCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CcCCCCChhhEEEcCCCCEEEe
Confidence            999 44332222 223   44556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+++......  .....||+.|++||+..  .. +..+|+|+   ++|+++. +.+||.+.+
T Consensus       145 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~  207 (311)
T 4agu_A          145 DFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLS-GVPLWPGKS  207 (311)
T ss_dssp             CCTTCEECC------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             eCCCchhccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHh-CCCCCCCCC
Confidence            999998765433  23456789999999853  33 44566666   5566555 566776654

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.97  E-value=2e-30  Score=242.15  Aligned_cols=187  Identities=17%  Similarity=0.155  Sum_probs=145.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--------CCe
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--------PNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--------~~~   83 (334)
                      +++...||+|.++.+|+.||||++............+.+|+++++.++||||        +++++++..        ++.
T Consensus        27 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~~~   98 (351)
T 3mi9_A           27 QGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV--------VNLIEICRTKASPYNRCKGS   98 (351)
T ss_dssp             SCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTB--------CCEEEEEEEC--------CE
T ss_pred             cCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCc--------ccHhheeeccccccccCCce
Confidence            5677899999999999999999998766544445567789999999999999        999999886        456


Q ss_pred             EEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          84 HYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        84 ~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +|+||||++|++..........+   ....+..++.|++.||.|||+++                |+||||||+|||++.
T Consensus        99 ~~lv~e~~~~~l~~~l~~~~~~~---~~~~~~~i~~qi~~~l~~LH~~~----------------ivH~Dlkp~NIl~~~  159 (351)
T 3mi9_A           99 IYLVFDFCEHDLAGLLSNVLVKF---TLSEIKRVMQMLLNGLYYIHRNK----------------ILHRDMKAANVLITR  159 (351)
T ss_dssp             EEEEEECCSEEHHHHHHCTTSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECT
T ss_pred             EEEEEeccCCCHHHHHhhccCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeCCCCCHHHEEEcC
Confidence            89999999998433333332333   44556677889999999999999                999999999999999


Q ss_pred             CCCEEEEecccccccCCCC------CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         164 HGHVRISDLGLACDFSKKK------PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~------~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ++.+||+|||+|+......      .....||+.|++||+..  .. ...+|+|+   ++|+++. +.+||.+.+
T Consensus       160 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~  233 (351)
T 3mi9_A          160 DGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT-RSPIMQGNT  233 (351)
T ss_dssp             TSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             CCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHh-CCCCCCCCC
Confidence            9999999999998664322      23456799999999753  23 44566666   5555555 566776654

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.97  E-value=2.2e-30  Score=237.38  Aligned_cols=244  Identities=11%  Similarity=0.012  Sum_probs=172.4

Q ss_pred             CCCceEEEecee-----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSL-----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~-----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++...||+|.+     +.+++.||||+++.... ....+.+.+|+++++.++||||        +++++++.+++.+|+
T Consensus        33 ~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~l  103 (314)
T 2ivs_A           33 EGEFGKVVKATAFHLKGRAGYTTVAVKMLKENAS-PSELRDLLSEFNVLKQVNHPHV--------IKLYGACSQDGPLLL  103 (314)
T ss_dssp             ECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCC-HHHHHHHHHHHHHHTTCCCTTB--------CCEEEEECSSSSCEE
T ss_pred             ccCCeeEEEEEEeccCcccCcceEEEEeccCCCC-HHHHHHHHHHHHHHhhCCCCce--------eeEEEEEecCCceEE
Confidence            467789999987     45668999999986543 3344578889999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhh--------------------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCC
Q psy6542          87 IGVRQSGP-KDQISRSKIN--------------------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLS  145 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~--------------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~  145 (334)
                      ||||++|+ +..+......                    .........++.++.|++.||.|||+++             
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~-------------  170 (314)
T 2ivs_A          104 IVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMK-------------  170 (314)
T ss_dssp             EEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTT-------------
T ss_pred             EEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCC-------------
Confidence            99999977 4433332111                    0011355667788889999999999999             


Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHc
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLF  216 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~  216 (334)
                         |+||||||+||+++.++.+||+|||+++.......    ....+++.|++||+.. .. +..+|+|+   ++|+++.
T Consensus       171 ---ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t  247 (314)
T 2ivs_A          171 ---LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT  247 (314)
T ss_dssp             ---EECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHT
T ss_pred             ---CcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHh
Confidence               99999999999999999999999999987654432    2334577899999743 22 44566666   6667766


Q ss_pred             CCCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccc
Q psy6542         217 PNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSA  296 (334)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  296 (334)
                      .+..||.+........                     .+....          ..+....+++.+..  +...+...+|.
T Consensus       248 ~g~~p~~~~~~~~~~~---------------------~~~~~~----------~~~~~~~~~~~~~~--li~~~l~~dp~  294 (314)
T 2ivs_A          248 LGGNPYPGIPPERLFN---------------------LLKTGH----------RMERPDNCSEEMYR--LMLQCWKQEPD  294 (314)
T ss_dssp             TSCCSSTTCCGGGHHH---------------------HHHTTC----------CCCCCTTCCHHHHH--HHHHHTCSSGG
T ss_pred             CCCCCCCCCCHHHHHH---------------------HhhcCC----------cCCCCccCCHHHHH--HHHHHccCChh
Confidence            5777875543211110                     010000          00011233344444  77888888999


Q ss_pred             cch-hHHHHHHHHHHhCC
Q psy6542         297 HKC-SQELLGSMARKAGK  313 (334)
Q Consensus       297 ~r~-~~~lL~~l~~~~~~  313 (334)
                      .|+ +.++++++.+...+
T Consensus       295 ~Rps~~~l~~~l~~~~~~  312 (314)
T 2ivs_A          295 KRPVFADISKDLEKMMVK  312 (314)
T ss_dssp             GSCCHHHHHHHHHHHHHT
T ss_pred             hCcCHHHHHHHHHHHHhh
Confidence            999 88888888775443

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.97  E-value=9.8e-30  Score=229.53  Aligned_cols=184  Identities=13%  Similarity=0.006  Sum_probs=142.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||+++...........+.+|+.++..+ +||||        +++++++.+++.+|+||||
T Consensus        21 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~i--------v~~~~~~~~~~~~~lv~e~   92 (289)
T 1x8b_A           21 SGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHV--------VRYFSAWAEDDHMLIQNEY   92 (289)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTB--------CCEEEEEEETTEEEEEEEC
T ss_pred             CCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCe--------eeeeeeeecCCeEEEEEEe
Confidence            46788999999999999999999997766555566778899999999 99999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-----
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-----  164 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-----  164 (334)
                      ++|+ +..+...............++.++.|++.||.|||+++                |+||||||+||+++.+     
T Consensus        93 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~----------------ivH~Dikp~NIl~~~~~~~~~  156 (289)
T 1x8b_A           93 CNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS----------------LVHMDIKPSNIFISRTSIPNA  156 (289)
T ss_dssp             CTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEC-------
T ss_pred             cCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCC----------------EeecCCCHHHEEEcCCCCCcc
Confidence            9886 54443332211122355666778889999999999999                9999999999999844     


Q ss_pred             --------------CCEEEEecccccccCCCCCCccccCcccccccccccc--C-Ccceeeh--hHHHHHcCCCCC
Q psy6542         165 --------------GHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLG--G-PFVSAWQ--TRYAKLFPNRLE  221 (334)
Q Consensus       165 --------------~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~~--~-~~~~~w~--~~~~~l~~~~~~  221 (334)
                                    ..+||+|||++.......  ...||+.|++||+....  + +.+|+|+  +++..+.++.++
T Consensus       157 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~  230 (289)
T 1x8b_A          157 ASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ--VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPL  230 (289)
T ss_dssp             -------------CCCEEECCCTTCEETTCSC--CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             cccccccccccCCceEEEEcccccccccCCcc--ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCC
Confidence                          479999999998776543  34588999999986433  3 3566677  443444555443

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.97  E-value=1.9e-30  Score=247.30  Aligned_cols=223  Identities=14%  Similarity=0.100  Sum_probs=149.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHH-HhcCCCCcccccccceeeEEEEeec----CCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIF-NHLRNEPFKKCVLLFKMNLYKVTSE----PNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il-~~l~h~~i~~~~~~~~v~~~~~~~~----~~~~~i   86 (334)
                      +++.+.||+|.++.+|+.||||+++..       ..+.+|++++ +..+||||        +++++++..    .+.+||
T Consensus        72 ~G~~g~V~~~~~~~~~~~vAiK~~~~~-------~~~~~E~~~~~~~~~hp~i--------v~l~~~~~~~~~~~~~~~l  136 (400)
T 1nxk_A           72 LGINGKVLQIFNKRTQEKFALKMLQDC-------PKARREVELHWRASQCPHI--------VRIVDVYENLYAGRKCLLI  136 (400)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEECS-------HHHHHHHHHHHHHTTSTTB--------CCEEEEEEEEETTEEEEEE
T ss_pred             eccCeEEEEEEECCCCCEEEEEEeCcc-------hhHHHHHHHHHHhcCCCCc--------ceEeEEEeecccCCcEEEE
Confidence            578889999999999999999999731       3455688887 45689999        999998875    567999


Q ss_pred             EEEccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-
Q psy6542          87 IGVRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-  163 (334)
Q Consensus        87 vmEy~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-  163 (334)
                      |||||+|+ + +++.......+   ....+..++.||+.||.|||+++                |+||||||+|||++. 
T Consensus       137 v~E~~~gg~L~~~l~~~~~~~l---~~~~~~~i~~qi~~aL~~LH~~~----------------ivHrDlkp~Nill~~~  197 (400)
T 1nxk_A          137 VMECLDGGELFSRIQDRGDQAF---TEREASEIMKSIGEAIQYLHSIN----------------IAHRDVKPENLLYTSK  197 (400)
T ss_dssp             EEECCCSEEHHHHHHCC---CC---BHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEESSS
T ss_pred             EEEeCCCCcHHHHHHHhCCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCcCcceEEEecC
Confidence            99999987 4 34432221223   45556677789999999999999                999999999999998 


Q ss_pred             --CCCEEEEecccccccCCCC-CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCccc---
Q psy6542         164 --HGHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPE---  232 (334)
Q Consensus       164 --~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~---  232 (334)
                        ++.+||+|||+++...... ....+||+.|++||+.. ..++ .+|+|+   ++|++++ +..||.+........   
T Consensus       198 ~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~~~  276 (400)
T 1nxk_A          198 RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLC-GYPPFYSNHGLAISPGMK  276 (400)
T ss_dssp             STTCCEEECCCTTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHH-SSCSCCCCTTCSSCCSHH
T ss_pred             CCCccEEEEecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHh-CCCCCCCCccccccHHHH
Confidence              7889999999998765443 34567899999999853 3344 455555   5555554 566787665432211   


Q ss_pred             -chhccccccccccc---ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         233 -LIFMDQIEEVSQDL---ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       233 -~i~~~~~~~~~~~~---~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                       .+..... ..+...   .+......+..++..||..|++..
T Consensus       277 ~~i~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  317 (400)
T 1nxk_A          277 TRIRMGQY-EFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTIT  317 (400)
T ss_dssp             HHHHHTCC-CCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             HHHHcCcc-cCCCcccccCCHHHHHHHHHHCCCChhHCcCHH
Confidence             1111111 111111   111334556666677888887644

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.97  E-value=5.8e-31  Score=256.43  Aligned_cols=229  Identities=17%  Similarity=0.216  Sum_probs=167.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||++.+... .......+.+|+++++.++||||        +++++++.+.+.+|+||||
T Consensus        36 ~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~lv~e~  107 (484)
T 3nyv_A           36 KGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNI--------MKLYEFFEDKGYFYLVGEV  107 (484)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCC--------CcEEEEEEeCCEEEEEEec
Confidence            46788999999999999999999987654 23344578889999999999999        9999999999999999999


Q ss_pred             cCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee---CCCC
Q psy6542          91 QSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL---DEHG  165 (334)
Q Consensus        91 ~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl---~~~~  165 (334)
                      +.|+ + +.+...  ..+   ....++.++.|++.||.|||+++                |+||||||+|||+   +.++
T Consensus       108 ~~~~~L~~~~~~~--~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------ivH~Dlkp~Nil~~~~~~~~  166 (484)
T 3nyv_A          108 YTGGELFDEIISR--KRF---SEVDAARIIRQVLSGITYMHKNK----------------IVHRDLKPENLLLESKSKDA  166 (484)
T ss_dssp             CCSCBHHHHHHTC--SCC---BHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEESSSSTTC
T ss_pred             CCCCCHHHHHHhc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeeCCCCHHHEEEecCCCCC
Confidence            9988 3 344322  233   44555677789999999999999                9999999999999   5678


Q ss_pred             CEEEEecccccccCCCCC-CccccCccccccccccccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccc
Q psy6542         166 HVRISDLGLACDFSKKKP-HASVESDCILHGYIKKLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIE  240 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  240 (334)
                      .+||+|||+++....... ....||+.|++||+....++ .+|+|+   ++|++ .++.+||.+.+.......+......
T Consensus       167 ~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~l-l~g~~pf~~~~~~~~~~~i~~~~~~  245 (484)
T 3nyv_A          167 NIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYIL-LSGCPPFNGANEYDILKKVEKGKYT  245 (484)
T ss_dssp             CEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHH-HHSSCSSCCSSHHHHHHHHHHCCCC
T ss_pred             cEEEEeeeeeEEcccccccccCCCCccccCceeecCCCCCcceeHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHcCCCC
Confidence            899999999987765543 34578999999998654544 556666   45555 5566788776532222222222211


Q ss_pred             -cccc-ccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         241 -EVSQ-DLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       241 -~~~~-~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                       ..+. ...+......+..++..+|..|++..
T Consensus       246 ~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~  277 (484)
T 3nyv_A          246 FELPQWKKVSESAKDLIRKMLTYVPSMRISAR  277 (484)
T ss_dssp             CCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCcccccCCHHHHHHHHHHCCCChhHCcCHH
Confidence             1110 01111345567777788999998754

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.97  E-value=6.1e-30  Score=237.04  Aligned_cols=186  Identities=20%  Similarity=0.218  Sum_probs=145.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..+|+.||||++..........+.+.+|+++++.++||||        +++++++.+.+.+|+||||+
T Consensus        35 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~  106 (331)
T 4aaa_A           35 EGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENL--------VNLLEVCKKKKRWYLVFEFV  106 (331)
T ss_dssp             GGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             ecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCE--------eeEEEEeecCCEEEEEEecC
Confidence            5677899999999999999999998777666667778899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ ++.+.... ..+   ....+..++.|++.||.|||+++                |+||||||+||+++.++.+||+
T Consensus       107 ~~~~l~~~~~~~-~~~---~~~~~~~~~~qi~~~l~~LH~~~----------------ivH~dlkp~Nil~~~~~~~kl~  166 (331)
T 4aaa_A          107 DHTILDDLELFP-NGL---DYQVVQKYLFQIINGIGFCHSHN----------------IIHRDIKPENILVSQSGVVKLC  166 (331)
T ss_dssp             SEEHHHHHHHST-TCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTTSCEEEC
T ss_pred             CcchHHHHHhhc-cCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EEccCcChheEEEcCCCcEEEE
Confidence            999 44432221 223   45556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+++......  .....|++.|++||+...  . ...+|+|+   ++|+++. +..||.+.+
T Consensus       167 Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~  229 (331)
T 4aaa_A          167 DFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFM-GEPLFPGDS  229 (331)
T ss_dssp             CCTTC------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             eCCCceeecCCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHh-CCCCCCCCC
Confidence            999998665433  234568999999998532  3 44566666   5566655 556776654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=1.1e-30  Score=234.77  Aligned_cols=236  Identities=14%  Similarity=0.087  Sum_probs=169.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+.. ++.||||++.......   +.+.+|++++++++||||        +++++++.+++.+|+||||+
T Consensus        20 ~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~---~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   87 (269)
T 4hcu_A           20 SGQFGLVHLGYWLN-KDKVAIKTIREGAMSE---EDFIEEAEVMMKLSHPKL--------VQLYGVCLEQAPICLVFEFM   87 (269)
T ss_dssp             ECSSCEEEEEEETT-TEEEEEEEECTTSBCH---HHHHHHHHHHHTCCCTTB--------CCEEEEECSSSSEEEEEECC
T ss_pred             CCCccEEEEEEecC-CCeEEEEEecccccCH---HHHHHHHHHHHhCCCCCE--------eeEEEEEecCCceEEEEEeC
Confidence            57788999999875 7789999998765432   457789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.+||+
T Consensus        88 ~~~~L~~~l~~~~~~~---~~~~~~~i~~~i~~~l~~lH~~~----------------i~H~dikp~Nil~~~~~~~kl~  148 (269)
T 4hcu_A           88 EHGCLSDYLRTQRGLF---AAETLLGMCLDVCEGMAYLEEAC----------------VIHRDLAARNCLVGENQVIKVS  148 (269)
T ss_dssp             TTCBHHHHHHTTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECGGGCEEEC
T ss_pred             CCCcHHHHHHhcCccc---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCcchheEEEcCCCCEEec
Confidence            987 544433322223   45556777889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC---CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         171 DLGLACDFSKKK---PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       171 DFGla~~~~~~~---~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |||+++......   .....+++.|++||+.. ..++ .+|+|+   ++|+++..+..||...+.....           
T Consensus       149 Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~-----------  217 (269)
T 4hcu_A          149 DFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVV-----------  217 (269)
T ss_dssp             CTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHH-----------
T ss_pred             cccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHH-----------
Confidence            999998665443   22334567899999853 3344 556666   6677777678787543311000           


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                                ..+.... .     ..    .....++.+.+  +...+...+|..|+ +.++++++....
T Consensus       218 ----------~~~~~~~-~-----~~----~~~~~~~~~~~--li~~~l~~~p~~Rps~~~ll~~l~~l~  265 (269)
T 4hcu_A          218 ----------EDISTGF-R-----LY----KPRLASTHVYQ--IMNHCWRERPEDRPAFSRLLRQLAEIA  265 (269)
T ss_dssp             ----------HHHHTTC-C-----CC----CCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ----------HHHhcCc-c-----CC----CCCcCCHHHHH--HHHHHccCCcccCcCHHHHHHHHHHHH
Confidence                      0000000 0     00    01112233334  77788888999999 888888887653

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.97  E-value=3.1e-30  Score=231.49  Aligned_cols=237  Identities=14%  Similarity=0.042  Sum_probs=170.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.++ ++..||||+++.....   .+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        18 ~G~~g~V~~~~~~-~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   85 (268)
T 3sxs_A           18 SGQFGVVKLGKWK-GQYDVAVKMIKEGSMS---EDEFFQEAQTMMKLSHPKL--------VKFYGVCSKEYPIYIVTEYI   85 (268)
T ss_dssp             EETTEEEEEEEET-TTEEEEEEEECBTTBC---HHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSEEEEEECC
T ss_pred             cCCCceEEEEEec-CceeEEEEEeccCCCc---HHHHHHHHHHHHhCCCCCE--------eeEEEEEccCCceEEEEEcc
Confidence            4677899999776 4778999999876543   2457789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+.......+   ....++.++.|++.||.|||+++                ++||||||+||+++.++.+||+
T Consensus        86 ~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------i~H~dikp~Nil~~~~~~~~l~  146 (268)
T 3sxs_A           86 SNGCLLNYLRSHGKGL---EPSQLLEMCYDVCEGMAFLESHQ----------------FIHRDLAARNCLVDRDLCVKVS  146 (268)
T ss_dssp             TTCBHHHHHHHHGGGC---CHHHHHHHHHHHHHHHHHHHHTT----------------EEESSCSGGGEEECTTCCEEEC
T ss_pred             CCCcHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCcCcceEEECCCCCEEEc
Confidence            888 544433332223   45566778889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCCC---ccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         171 DLGLACDFSKKKPH---ASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       171 DFGla~~~~~~~~~---~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |||+++........   ...+++.|++||+..  ..+..+|+|+   ++|+++..+..||...+..   +          
T Consensus       147 Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~---~----------  213 (268)
T 3sxs_A          147 DFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS---E----------  213 (268)
T ss_dssp             CTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHH---H----------
T ss_pred             cCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChH---H----------
Confidence            99999876555432   233466799999853  2345666676   6677766577776443311   0          


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHhC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKAG  312 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~~  312 (334)
                                 .........       ........++.+..  +...+...+|..|+ +.++++++.....
T Consensus       214 -----------~~~~~~~~~-------~~~~~~~~~~~l~~--li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (268)
T 3sxs_A          214 -----------VVLKVSQGH-------RLYRPHLASDTIYQ--IMYSCWHELPEKRPTFQQLLSSIEPLRE  264 (268)
T ss_dssp             -----------HHHHHHTTC-------CCCCCTTSCHHHHH--HHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred             -----------HHHHHHcCC-------CCCCCCcChHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence                       000000000       00001112233334  78888889999999 8899998877543

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=1.8e-30  Score=241.32  Aligned_cols=190  Identities=15%  Similarity=0.159  Sum_probs=142.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++...||+|.+..+++.||||++.....   .....+.+.+|+++++.++||||        +++++++.+.+.+|+||
T Consensus        36 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~lv~  107 (345)
T 3hko_A           36 QGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNI--------ARLYEVYEDEQYICLVM  107 (345)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEE
T ss_pred             ecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCc--------ceeehhhccCCeEEEEE
Confidence            46778999999999999999999975432   22344578889999999999999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhhh------------------------------------hhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy6542          89 VRQSGP-KDQISRSKI------------------------------------NRYHKKLRKCFIRRTVQLLEPVHTCHSA  131 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~------------------------------------~~~~~~~~~~~~~i~~qi~~~L~yLH~~  131 (334)
                      ||++|+ +..+.....                                    ..........++.++.|++.||.|||++
T Consensus       108 e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~  187 (345)
T 3hko_A          108 ELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ  187 (345)
T ss_dssp             ECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC
Confidence            999888 433322100                                    0011224556777888999999999999


Q ss_pred             CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC--CEEEEecccccccCCCC------CCccccCcccccccccc---c
Q psy6542         132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG--HVRISDLGLACDFSKKK------PHASVESDCILHGYIKK---L  200 (334)
Q Consensus       132 ~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~--~vkl~DFGla~~~~~~~------~~~~~~t~~~~~~~v~~---~  200 (334)
                      +                |+||||||+||+++.++  .+||+|||+++.+....      .....||+.|++||+..   .
T Consensus       188 ~----------------ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  251 (345)
T 3hko_A          188 G----------------ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNE  251 (345)
T ss_dssp             T----------------EECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSS
T ss_pred             C----------------ccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCC
Confidence            9                99999999999998776  89999999998653321      23456899999999853   2


Q ss_pred             c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         201 G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       201 ~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      . +..+|+|+   ++|+++. +..||.+.+
T Consensus       252 ~~~~~~DiwslG~il~el~~-g~~pf~~~~  280 (345)
T 3hko_A          252 SYGPKCDAWSAGVLLHLLLM-GAVPFPGVN  280 (345)
T ss_dssp             CCCTHHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             CCCcHHHHHHHHHHHHHHHH-CCCCCCCCC
Confidence            3 34666666   5555554 556775543

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.97  E-value=7.7e-30  Score=231.64  Aligned_cols=186  Identities=16%  Similarity=0.090  Sum_probs=148.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec----CCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE----PNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~----~~~~~iv   87 (334)
                      +++...||+|.+..++..||+|.+..........+.+.+|+.+++.++||||        +++++++..    +..+|+|
T Consensus        36 ~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~lv  107 (290)
T 1t4h_A           36 RGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI--------VRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTB--------CCEEEEEEEESSSCEEEEEE
T ss_pred             CCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCe--------eeeeeeeccccCCCceEEEE
Confidence            5778899999999999999999999766655566788899999999999999        999998874    4568999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC-CCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD-EHG  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~-~~~  165 (334)
                      |||++|+ +..+.... ..+   ....++.++.|++.||.|||+++              ++|+||||||+||+++ .++
T Consensus       108 ~e~~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~--------------~~i~H~dikp~Nil~~~~~~  169 (290)
T 1t4h_A          108 TELMTSGTLKTYLKRF-KVM---KIKVLRSWCRQILKGLQFLHTRT--------------PPIIHRDLKCDNIFITGPTG  169 (290)
T ss_dssp             EECCCSCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHTSS--------------SCCCCSCCCGGGEEESSTTS
T ss_pred             EEecCCCCHHHHHHHc-cCC---CHHHHHHHHHHHHHHHHHHHcCC--------------CCEEECCCCHHHEEEECCCC
Confidence            9999887 54433321 122   45556777889999999999986              3499999999999997 789


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccccccCC-cceeeh---hHHHHHcCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGP-FVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      .+||+|||++............||+.|++||+....++ .+|+|+   ++|+++. +..||..
T Consensus       170 ~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~-g~~pf~~  231 (290)
T 1t4h_A          170 SVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMAT-SEYPYSE  231 (290)
T ss_dssp             CEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHH-SSCTTTT
T ss_pred             CEEEeeCCCcccccccccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHh-CCCCCCC
Confidence            99999999998777666666778999999998655544 555566   5556555 5556644

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.97  E-value=7.2e-31  Score=243.71  Aligned_cols=246  Identities=12%  Similarity=-0.010  Sum_probs=171.2

Q ss_pred             CCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++.+.||+|.+.     .+++.||||+++.... ....+.+.+|+++++.++||||        +++++++.+++.+|+
T Consensus        57 ~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~l  127 (343)
T 1luf_A           57 EGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS-ADMQADFQREAALMAEFDNPNI--------VKLLGVCAVGKPMCL  127 (343)
T ss_dssp             ECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC-HHHHHHHHHHHHHHHTCCCTTB--------CCEEEEECSSSSCEE
T ss_pred             ecCCeeEEEEEecCcCCCCCceeEEEEEeccccC-HHHHHHHHHHHHHHHhCCCCCE--------EEEEEEEccCCceEE
Confidence            4677899999987     4568999999986543 3345678899999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhhh--------------------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCC
Q psy6542          87 IGVRQSGP-KDQISRSKINR--------------------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLS  145 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~--------------------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~  145 (334)
                      ||||++|+ +..+.......                    .........+.++.||+.||.|||+++             
T Consensus       128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~-------------  194 (343)
T 1luf_A          128 LFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK-------------  194 (343)
T ss_dssp             EEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT-------------
T ss_pred             EEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCC-------------
Confidence            99999987 44433321100                    012345566778889999999999999             


Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHc
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLF  216 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~  216 (334)
                         |+||||||+||+++.++.+||+|||+++......    .....+++.|++||+.. ..+ ..+|+|+   ++|+++.
T Consensus       195 ---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t  271 (343)
T 1luf_A          195 ---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFS  271 (343)
T ss_dssp             ---CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             ---eecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHh
Confidence               9999999999999999999999999998654332    23345688899999743 234 4566666   6677766


Q ss_pred             CCCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccc
Q psy6542         217 PNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSA  296 (334)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  296 (334)
                      .+..||.+.+..   +                      +...+....  ..    +....+++.+.+  +...|...+|.
T Consensus       272 ~g~~p~~~~~~~---~----------------------~~~~~~~~~--~~----~~~~~~~~~l~~--li~~~l~~~p~  318 (343)
T 1luf_A          272 YGLQPYYGMAHE---E----------------------VIYYVRDGN--IL----ACPENCPLELYN--LMRLCWSKLPA  318 (343)
T ss_dssp             TTCCTTTTSCHH---H----------------------HHHHHHTTC--CC----CCCTTCCHHHHH--HHHHHTCSSGG
T ss_pred             cCCCcCCCCChH---H----------------------HHHHHhCCC--cC----CCCCCCCHHHHH--HHHHHcccCcc
Confidence            577777543311   0                      000110000  00    011233344444  77788888899


Q ss_pred             cch-hHHHHHHHHHHhCCCC
Q psy6542         297 HKC-SQELLGSMARKAGKIY  315 (334)
Q Consensus       297 ~r~-~~~lL~~l~~~~~~~~  315 (334)
                      .|+ +.++++.+.+...+..
T Consensus       319 ~Rps~~~~~~~L~~~~~~~~  338 (343)
T 1luf_A          319 DRPSFCSIHRILQRMCERAE  338 (343)
T ss_dssp             GSCCHHHHHHHHHHTTC---
T ss_pred             cCCCHHHHHHHHHHHHhhhh
Confidence            999 8888888887655443

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.97  E-value=2.8e-30  Score=243.80  Aligned_cols=186  Identities=12%  Similarity=0.037  Sum_probs=134.2

Q ss_pred             CCCceEEEeceeC---CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLK---PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~---~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++.+.||+|.++   .++..||||.++.... ....+.+.+|+++++.++||||        +++++++.+++.+|+||
T Consensus        55 ~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~lv~  125 (373)
T 2qol_A           55 AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYT-EKQRRDFLGEASIMGQFDHPNI--------IRLEGVVTKSKPVMIVT  125 (373)
T ss_dssp             ECSSSEEEEC-CBCTTSCBCCEEEEECCTTCC-HHHHHHHHHHHHHHTTCCCTTB--------CCEEEEECSSSSCEEEE
T ss_pred             eCCCeEEEEEEEecCCCCceeEEEEEecCccC-HHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEeeCCceEEEE
Confidence            4677899999987   5788899999986543 3345678899999999999999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||++|+ ++.+.......+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.+
T Consensus       126 e~~~~~sL~~~l~~~~~~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~Dlkp~NIll~~~~~~  186 (373)
T 2qol_A          126 EYMENGSLDSFLRKHDAQF---TVIQLVGMLRGIASGMKYLSDMG----------------YVHRDLAARNILINSNLVC  186 (373)
T ss_dssp             ECCTTCBHHHHHHTTTTCS---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTCCE
T ss_pred             eCCCCCcHHHHHHhCCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeCCCCCcceEEEcCCCCE
Confidence            999887 554444322223   44556778889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCC-----CccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKKP-----HASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       168 kl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ||+|||+++.......     ....++..|++||+.. ..+ ..+|+|+   ++|+++..+..||...
T Consensus       187 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~  254 (373)
T 2qol_A          187 KVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM  254 (373)
T ss_dssp             EECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC
T ss_pred             EECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999987654421     1123466799999853 334 4566666   7777777677777543

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.97  E-value=8.6e-30  Score=235.57  Aligned_cols=238  Identities=12%  Similarity=0.016  Sum_probs=165.6

Q ss_pred             CCCceEEEeceeCCCCCc----EEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFP----IQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~----vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++.+.||+|.+..+|+.    ||+|.+..... ....+.+.+|+.+++.++||||        +++++++. ++..++|
T Consensus        23 ~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~-~~~~~~v   92 (325)
T 3kex_A           23 SGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSG-RQSFQAVTDHMLAIGSLDHAHI--------VRLLGLCP-GSSLQLV   92 (325)
T ss_dssp             CCSSCEEEEEEECCTTCSCCEEEEEEEECCTTS-CSCBCSCCHHHHHHHTCCCTTB--------CCEEEEEC-BSSEEEE
T ss_pred             ecCCceEEEEEEcCCCceEEEEEEEEecccccc-HHHHHHHHHHHHHHhcCCCCCc--------CeEEEEEc-CCccEEE
Confidence            578889999999999988    66666654332 2233466779999999999999        99999886 5668999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.|+ +..........+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.
T Consensus        93 ~e~~~~~~L~~~l~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~Dikp~Nil~~~~~~  153 (325)
T 3kex_A           93 TQYLPLGSLLDHVRQHRGAL---GPQLLLNWGVQIAKGMYYLEEHG----------------MVHRNLAARNVLLKSPSQ  153 (325)
T ss_dssp             EECCTTCBSHHHHHSSGGGS---CTTHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSSTTEEESSSSC
T ss_pred             EEeCCCCCHHHHHHHccccC---CHHHHHHHHHHHHHHHHHHHhCC----------------CCCCccchheEEECCCCe
Confidence            9999987 433323222233   34455677789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC----CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcc
Q psy6542         167 VRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMD  237 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~  237 (334)
                      +||+|||+++.......    ....|+..|++||+.. ..++ .+|+|+   ++|+++..+..||.+.......+.    
T Consensus       154 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~----  229 (325)
T 3kex_A          154 VQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDL----  229 (325)
T ss_dssp             EEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHH----
T ss_pred             EEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHH----
Confidence            99999999997754432    2345677899999853 3344 455555   667776657878765432111111    


Q ss_pred             cccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         238 QIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                                       +....          ..+.....++.+..  +...|...+|..|+ +.++++++.+..
T Consensus       230 -----------------~~~~~----------~~~~~~~~~~~~~~--li~~~l~~dp~~Rps~~el~~~l~~~~  275 (325)
T 3kex_A          230 -----------------LEKGE----------RLAQPQICTIDVYM--VMVKCWMIDENIRPTFKELANEFTRMA  275 (325)
T ss_dssp             -----------------HHTTC----------BCCCCTTBCTTTTH--HHHHHTCSCTTTSCCHHHHHHHHHHHT
T ss_pred             -----------------HHcCC----------CCCCCCcCcHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                             10000          00112234556666  77777888888888 888888887654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.97  E-value=5.4e-30  Score=243.10  Aligned_cols=228  Identities=16%  Similarity=0.099  Sum_probs=163.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||+|++......  ....+.+|+++++.++||||        +++++++.+.+.+|+||||+
T Consensus        61 ~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~--~~~~~~~E~~il~~l~hpnI--------v~~~~~~~~~~~~~lv~E~~  130 (387)
T 1kob_A           61 SGAFGVVHRCVEKATGRVFVAKFINTPYPL--DKYTVKNEISIMNQLHHPKL--------INLHDAFEDKYEMVLILEFL  130 (387)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEECCSHH--HHHHHHHHHHHHTTCCSTTB--------CCEEEEEECSSEEEEEEECC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEecccchh--hHHHHHHHHHHHHhCCCcCC--------CeEEEEEEeCCEEEEEEEcC
Confidence            467789999999999999999999865432  23467889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC--CCCEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE--HGHVR  168 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~--~~~vk  168 (334)
                      .|+ +..........+   ....++.++.||+.||.|||+++                |+||||||+|||++.  ++.+|
T Consensus       131 ~gg~L~~~l~~~~~~l---~~~~~~~i~~qi~~aL~~LH~~g----------------ivHrDlkp~NIll~~~~~~~vk  191 (387)
T 1kob_A          131 SGGELFDRIAAEDYKM---SEAEVINYMRQACEGLKHMHEHS----------------IVHLDIKPENIMCETKKASSVK  191 (387)
T ss_dssp             CCCBHHHHTTCTTCCB---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEESSTTCCCEE
T ss_pred             CCCcHHHHHHhhcCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeecccchHHeEEecCCCCceE
Confidence            988 433323222223   45556777889999999999999                999999999999974  47799


Q ss_pred             EEecccccccCCCCC-CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         169 ISDLGLACDFSKKKP-HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       169 l~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |+|||+++....... ....||+.|++||+.. ..++ .+|+|+   ++|+++. +..||.+.+.......+...... .
T Consensus       192 L~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt-g~~Pf~~~~~~~~~~~i~~~~~~-~  269 (387)
T 1kob_A          192 IIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLS-GLSPFAGEDDLETLQNVKRCDWE-F  269 (387)
T ss_dssp             ECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHH-SCCSSCCSSHHHHHHHHHHCCCC-C
T ss_pred             EEecccceecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCC-C
Confidence            999999997765543 3457899999999853 3344 556666   5566655 66688765432222222111111 1


Q ss_pred             ccc---cccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQD---LITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~---~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +..   ..+....+.+..++..||..|++..
T Consensus       270 ~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  300 (387)
T 1kob_A          270 DEDAFSSVSPEAKDFIKNLLQKEPRKRLTVH  300 (387)
T ss_dssp             CSSTTTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CccccccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            111   1111344566666677888888754

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.97  E-value=6.7e-30  Score=230.49  Aligned_cols=187  Identities=17%  Similarity=0.223  Sum_probs=131.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+..+|+.||||++..... .....+.+.+|+++++.++||||        +++++++.+.+.+|+||||
T Consensus        21 ~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~   92 (278)
T 3cok_A           21 KGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSI--------LELYNYFEDSNYVYLVLEM   92 (278)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             CCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCe--------EeEEEEEccCCeEEEEEec
Confidence            46778999999999999999999975432 22234568889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++++ +..+.......+   ....++.++.|++.||.|||+++                ++||||||+||+++.++.+||
T Consensus        93 ~~~~~L~~~l~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dl~p~Nili~~~~~~kl  153 (278)
T 3cok_A           93 CHNGEMNRYLKNRVKPF---SENEARHFMHQIITGMLYLHSHG----------------ILHRDLTLSNLLLTRNMNIKI  153 (278)
T ss_dssp             CTTEEHHHHHHTCSSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSSCCGGGEEECTTCCEEE
T ss_pred             CCCCcHHHHHhhccCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHEEEcCCCCEEE
Confidence            9887 544433322223   44556777889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||++.......  .....|++.|++||+...  ....+|+|+   ++|+++. +..||....
T Consensus       154 ~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~  216 (278)
T 3cok_A          154 ADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLI-GRPPFDTDT  216 (278)
T ss_dssp             CCCTTCEECC----------------------------CTHHHHHHHHHHHHHH-SSCSSCCCS
T ss_pred             EeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHh-CCCCCCChh
Confidence            9999998765432  234568899999998532  244667777   5566654 566775544

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.97  E-value=2.8e-30  Score=240.30  Aligned_cols=223  Identities=13%  Similarity=0.036  Sum_probs=161.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcc------hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHE------SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~------~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      .+++.+.||+|.++.+|+.||||+++.....      ......+.+|+++++.++||||        +++++++.+.+.+
T Consensus        33 G~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~I--------v~~~~~~~~~~~~  104 (335)
T 3dls_A           33 GSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI--------IKVLDIFENQGFF  104 (335)
T ss_dssp             SSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTB--------CCEEEEEECSSEE
T ss_pred             EecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCE--------eeEEEEEeeCCEE
Confidence            3578889999999999999999999976531      1234467789999999999999        9999999999999


Q ss_pred             EEEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          85 YIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        85 ~ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      ++||||+.+|  +..+.... ..+   ....++.++.|++.||.|||+++                |+||||||+|||++
T Consensus       105 ~lv~e~~~~g~~l~~~~~~~-~~l---~~~~~~~i~~qi~~~L~~LH~~~----------------ivH~Dlkp~NIll~  164 (335)
T 3dls_A          105 QLVMEKHGSGLDLFAFIDRH-PRL---DEPLASYIFRQLVSAVGYLRLKD----------------IIHRDIKDENIVIA  164 (335)
T ss_dssp             EEEEECCTTSCBHHHHHHTC-CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEC
T ss_pred             EEEEEeCCCCccHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEEeccCHHHEEEc
Confidence            9999998776  33222221 123   45556677889999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCCCC-CccccCccccccccccc-c--CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchh
Q psy6542         163 EHGHVRISDLGLACDFSKKKP-HASVESDCILHGYIKKL-G--GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIF  235 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~-~--~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~  235 (334)
                      .++.+||+|||+++....... ....||+.|++||+... .  ...+|+|+   ++|++++ +..||......     . 
T Consensus       165 ~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~-----~-  237 (335)
T 3dls_A          165 EDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVF-EENPFCELEET-----V-  237 (335)
T ss_dssp             TTSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHH-SSCSCSSGGGG-----T-
T ss_pred             CCCcEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHh-CCCchhhHHHH-----H-
Confidence            999999999999987765543 44678999999998532 2  23456666   5556554 55576442211     1 


Q ss_pred             cccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         236 MDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .... ..+ ...+......+...+..+|..|++..
T Consensus       238 ~~~~-~~~-~~~~~~l~~li~~~L~~dP~~Rps~~  270 (335)
T 3dls_A          238 EAAI-HPP-YLVSKELMSLVSGLLQPVPERRTTLE  270 (335)
T ss_dssp             TTCC-CCS-SCCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hhcc-CCC-cccCHHHHHHHHHHccCChhhCcCHH
Confidence            1111 111 11122334566666677888887643

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.97  E-value=6.6e-30  Score=231.08  Aligned_cols=184  Identities=21%  Similarity=0.263  Sum_probs=145.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.++.+|+.||+|++..........+.+.+|+++++.++||||        +++++++.+++..|+||||+
T Consensus        16 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~v~e~~   87 (284)
T 3kk8_A           16 KGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNI--------VRLHDSIQEESFHYLVFDLV   87 (284)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEECCC
T ss_pred             CcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCc--------CeEEEEEEcCCEEEEEEecC
Confidence            4677899999999999999999998766655556678899999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC---
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH---  166 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~---  166 (334)
                      .|+ + +.+...  ..+   ....+..++.|++.||.|||+++                |+||||||+||+++.++.   
T Consensus        88 ~~~~l~~~~~~~--~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dikp~Nil~~~~~~~~~  146 (284)
T 3kk8_A           88 TGGELFEDIVAR--EFY---SEADASHCIQQILESIAYCHSNG----------------IVHRNLKPENLLLASKAKGAA  146 (284)
T ss_dssp             CSCBHHHHHHHH--SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEESSSSTTCC
T ss_pred             CCCCHHHHHHhc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cCcCCCCHHHEEEecCCCCCc
Confidence            987 3 333222  123   44555677789999999999999                999999999999987655   


Q ss_pred             EEEEecccccccCCCCC-CccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKP-HASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +||+|||++........ ....||+.|++||+... . +..+|+|+   ++|+++. +..||.+.
T Consensus       147 ~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~-g~~pf~~~  210 (284)
T 3kk8_A          147 VKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLV-GYPPFWDE  210 (284)
T ss_dssp             EEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCS
T ss_pred             EEEeeceeeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHH-CCCCCCCC
Confidence            99999999987765543 34578999999998533 2 44566666   5555554 55566443

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.97  E-value=1.4e-30  Score=239.33  Aligned_cols=186  Identities=15%  Similarity=0.121  Sum_probs=138.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC----eEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN----SHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~----~~~i   86 (334)
                      +++...||+|.+..+|+.||||+++.... +......+.+|+++++.++||||        +++++++...+    ..|+
T Consensus        22 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~~~~~l   93 (311)
T 3ork_A           22 FGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAI--------VAVYDTGEAETPAGPLPYI   93 (311)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTB--------CCEEEEEEEEETTEEEEEE
T ss_pred             cCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCc--------ceEEEeeeccCCCCcccEE
Confidence            46788999999999999999999987654 44455678899999999999999        99999987543    3599


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      ||||++|+ +..+.... ..+   ....++.++.|++.||.|||+++                |+||||||+|||++.++
T Consensus        94 v~e~~~g~~L~~~l~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~dlkp~Nil~~~~~  153 (311)
T 3ork_A           94 VMEYVDGVTLRDIVHTE-GPM---TPKRAIEVIADACQALNFSHQNG----------------IIHRDVKPANIMISATN  153 (311)
T ss_dssp             EEECCCEEEHHHHHHHH-CSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEEETTS
T ss_pred             EEecCCCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CCcCCCCHHHEEEcCCC
Confidence            99999987 54443322 123   45556677889999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCC-----CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKK-----PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++......     .....||+.|++||+.. ..++ .+|+|+   ++|+++. +..||.+.+
T Consensus       154 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~-g~~pf~~~~  223 (311)
T 3ork_A          154 AVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLT-GEPPFTGDS  223 (311)
T ss_dssp             CEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             CEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHh-CCCCCCCCC
Confidence            99999999998665432     22346899999999853 2334 566666   6666665 566775543

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.97  E-value=2.8e-30  Score=243.17  Aligned_cols=242  Identities=12%  Similarity=0.014  Sum_probs=167.2

Q ss_pred             CCCCceEEEece-----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEE
Q psy6542          11 SRVSKWRVKPPS-----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        11 ~~~~~~~V~~a~-----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      -+|+.+.||+|.     +..+++.||||+++..... .....+.+|+.+++.++||||        +++++++.+.+..|
T Consensus        80 G~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~hpnI--------v~~~~~~~~~~~~~  150 (367)
T 3l9p_A           80 GHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE-QDELDFLMEALIISKFNHQNI--------VRCIGVSLQSLPRF  150 (367)
T ss_dssp             CCCSSSCEEEEEECC-----CCEEEEEEECCSSCCH-HHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCE
T ss_pred             eeCCCEEEEEEEEccCCCCCcceeEEEEecccccCh-hhHHHHHHHHHHHHhCCCCCC--------CeEEEEEecCCCCE
Confidence            357788999999     5678889999999754432 234467789999999999999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          86 IIGVRQSGP-KDQISRSKIN---RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~---~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      +||||+.|+ +..+......   .........++.++.||+.||.|||+++                |+||||||+|||+
T Consensus       151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~----------------ivHrDlkp~NIll  214 (367)
T 3l9p_A          151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH----------------FIHRDIAARNCLL  214 (367)
T ss_dssp             EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEE
T ss_pred             EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCC----------------eeCCCCChhhEEE
Confidence            999999887 5443333211   1112345566778889999999999999                9999999999999


Q ss_pred             CCCC---CEEEEecccccccCCC----CCCccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCCCCCCCCC
Q psy6542         162 DEHG---HVRISDLGLACDFSKK----KPHASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQS  229 (334)
Q Consensus       162 ~~~~---~vkl~DFGla~~~~~~----~~~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~  229 (334)
                      +.++   .+||+|||+|+.....    ......+|+.|++||+. ...++ .+|+|+   ++|+++..+..||.+.+...
T Consensus       215 ~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~  294 (367)
T 3l9p_A          215 TCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE  294 (367)
T ss_dssp             SCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH
T ss_pred             ecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence            9655   4999999999854222    22345568899999984 33344 455555   66777766787875543111


Q ss_pred             cccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHH
Q psy6542         230 KPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMA  308 (334)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~  308 (334)
                      ..                     ..+....          ..+....++..+..  +...|...+|..|+ +.++++++.
T Consensus       295 ~~---------------------~~i~~~~----------~~~~~~~~~~~l~~--li~~~l~~dP~~Rps~~eil~~l~  341 (367)
T 3l9p_A          295 VL---------------------EFVTSGG----------RMDPPKNCPGPVYR--IMTQCWQHQPEDRPNFAIILERIE  341 (367)
T ss_dssp             HH---------------------HHHHTTC----------CCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HH---------------------HHHHcCC----------CCCCCccCCHHHHH--HHHHHcCCCHhHCcCHHHHHHHHH
Confidence            00                     0011000          00011223333444  77788888899988 888888776


Q ss_pred             HH
Q psy6542         309 RK  310 (334)
Q Consensus       309 ~~  310 (334)
                      ..
T Consensus       342 ~~  343 (367)
T 3l9p_A          342 YC  343 (367)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.97  E-value=2.4e-31  Score=250.69  Aligned_cols=184  Identities=18%  Similarity=0.184  Sum_probs=131.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC------CeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP------NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~------~~~~   85 (334)
                      +++.+.||+|.+..+|+.||||++..........+.+.+|+++++.++||||        +++++++...      +.+|
T Consensus        39 ~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI--------v~~~~~~~~~~~~~~~~~~~  110 (367)
T 2fst_X           39 SGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV--------IGLLDVFTPARSLEEFNDVY  110 (367)
T ss_dssp             ----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTB--------CCCSEEECSCSSGGGCCCCE
T ss_pred             ecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCC--------CcEEEEEecCCccccCCeEE
Confidence            4677899999999999999999998765555566778899999999999999        9999998754      5689


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||||+.+++..+...  ..+   ....+..++.||+.||.|||+++                |+||||||+|||++.++
T Consensus       111 lv~e~~~~~L~~~~~~--~~l---~~~~~~~i~~qi~~aL~~LH~~g----------------ivH~Dlkp~NIll~~~~  169 (367)
T 2fst_X          111 LVTHLMGADLNNIVKC--QKL---TDDHVQFLIYQILRGLKYIHSAD----------------IIHRDLKPSNLAVNEDC  169 (367)
T ss_dssp             EEEECCCEECC-------CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTTC
T ss_pred             EEecccCCCHHHHHhc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeeCCCCHhhEEECCCC
Confidence            9999997665444333  123   44555677789999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++..... .....||..|++||+...  . ...+|+|+   ++|++ .++.+||.+.+
T Consensus       170 ~~kL~DFG~a~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el-l~g~~pf~~~~  234 (367)
T 2fst_X          170 ELKILDFGLARHTADE-MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAEL-LTGRTLFPGTD  234 (367)
T ss_dssp             CEEECC----------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHH-HHSSCSCCCSS
T ss_pred             CEEEeecccccccccc-CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHH-HhCCCCCCCCC
Confidence            9999999999876543 334578999999998532  3 44566666   45555 45667887655

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1e-30  Score=244.03  Aligned_cols=187  Identities=16%  Similarity=0.109  Sum_probs=142.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++.+.||+|.++.+|+.||||++.....   .....+.+.+|+++++.++||||        +++++++.+.+.+|+||
T Consensus        20 ~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~   91 (346)
T 1ua2_A           20 EGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNI--------IGLLDAFGHKSNISLVF   91 (346)
T ss_dssp             EETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTB--------CCEEEEECCTTCCEEEE
T ss_pred             ecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCC--------CeEEEEEeeCCceEEEE
Confidence            46778999999999999999999986543   22234567789999999999999        99999999999999999


Q ss_pred             EccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          89 VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        89 Ey~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||++|++..........+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.+|
T Consensus        92 e~~~~~l~~~~~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~Dlkp~Nil~~~~~~~k  152 (346)
T 1ua2_A           92 DFMETDLEVIIKDNSLVL---TPSHIKAYMLMTLQGLEYLHQHW----------------ILHRDLKPNNLLLDENGVLK  152 (346)
T ss_dssp             ECCSEEHHHHHTTCCSSC---CSSHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTTCCEE
T ss_pred             EcCCCCHHHHHHhcCcCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EECCCCCHHHEEEcCCCCEE
Confidence            999998544434332233   33445667779999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCcccccccccc--ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIKK--LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+++......  .....||+.|++||+..  ..++ .+|+|+   ++|+++. +.+||.+.+
T Consensus       153 l~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~~~~~~~  217 (346)
T 1ua2_A          153 LADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLL-RVPFLPGDS  217 (346)
T ss_dssp             ECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             EEecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHH-CCCCCCCCC
Confidence            99999998765433  23457899999999853  2244 556666   6666665 566766554

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.97  E-value=1.1e-30  Score=242.03  Aligned_cols=186  Identities=19%  Similarity=0.126  Sum_probs=136.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..+|+.||||+++.........+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        44 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~  115 (329)
T 3gbz_A           44 EGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNI--------IELKSVIHHNHRLHLIFEYA  115 (329)
T ss_dssp             ECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             ecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCc--------ceEEEEEecCCEEEEEEecC
Confidence            4677899999999999999999998766555455667789999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC-----CCCC
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD-----EHGH  166 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~-----~~~~  166 (334)
                      +|++..+.... ..+   ....+..++.||+.||.|||+++                |+||||||+|||++     .++.
T Consensus       116 ~~~L~~~~~~~-~~~---~~~~~~~i~~ql~~~l~~LH~~~----------------ivH~Dlkp~NIll~~~~~~~~~~  175 (329)
T 3gbz_A          116 ENDLKKYMDKN-PDV---SMRVIKSFLYQLINGVNFCHSRR----------------CLHRDLKPQNLLLSVSDASETPV  175 (329)
T ss_dssp             SEEHHHHHHHC-TTC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEEEC-----CCE
T ss_pred             CCCHHHHHhhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EECCCCCHHHEEEecCCCCccce
Confidence            98854333322 122   45556677889999999999999                99999999999994     4556


Q ss_pred             EEEEecccccccCCCC--CCccccCccccccccccc---cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK--PHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +||+|||+++......  .....||+.|++||+...   ....+|+|+   ++|+++. +..||.+.+
T Consensus       176 ~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~  242 (329)
T 3gbz_A          176 LKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLM-KTPLFPGDS  242 (329)
T ss_dssp             EEECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             EEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHH-CCCCcCCCC
Confidence            9999999998765432  234567999999998532   244566666   5555555 566776544

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.97  E-value=2.8e-30  Score=233.26  Aligned_cols=184  Identities=18%  Similarity=0.199  Sum_probs=141.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+..+++.||||++..... .......+.+|+++++.++||||        +++++++.+.+..|+||||
T Consensus        19 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~   90 (279)
T 3fdn_A           19 KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNI--------LRLYGYFHDATRVYLILEY   90 (279)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             cCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCC--------cchhheEecCCEEEEEEec
Confidence            46778999999999999999999975443 22234567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +....... ..+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.+||
T Consensus        91 ~~~~~l~~~l~~~-~~~---~~~~~~~~~~qi~~~l~~LH~~~----------------i~H~dlkp~Nili~~~~~~~l  150 (279)
T 3fdn_A           91 APLGTVYRELQKL-SKF---DEQRTATYITELANALSYCHSKR----------------VIHRDIKPENLLLGSAGELKI  150 (279)
T ss_dssp             CTTEEHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHTTT----------------CEECCCCGGGEEECTTSCEEE
T ss_pred             CCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EecccCChHhEEEcCCCCEEE
Confidence            9988 43332221 223   45556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|||++............|++.|++||+... . ...+|+|+   ++|+++. +..||.+
T Consensus       151 ~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~  209 (279)
T 3fdn_A          151 ADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV-GKPPFEA  209 (279)
T ss_dssp             CSCCEESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHH-SSCTTCC
T ss_pred             EeccccccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHH-CCCCCCC
Confidence            9999998776666666778999999998532 2 44666677   5566655 5556644

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.96  E-value=4.3e-30  Score=233.17  Aligned_cols=187  Identities=18%  Similarity=0.211  Sum_probs=141.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.++.+|+.||||.+....... ..+.+.+|+++++.++||||        +++++++.+.+.+|+||||+
T Consensus        32 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e~~  102 (285)
T 3is5_A           32 SGAFGDVHLVEERSSGLERVIKTINKDRSQV-PMEQIEAEIEVLKSLDHPNI--------IKIFEVFEDYHNMYIVMETC  102 (285)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEGGGCCS-CHHHHHHHHHHHHTCCCTTB--------CCEEEEEECSSEEEEEECCC
T ss_pred             cCCCeEEEEEEEccCCceEEEEEeeccccch-hHHHHHHHHHHHHhCCCchH--------HhHHHheecCCeEEEEEEeC
Confidence            4778899999999999999999998654322 23567889999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee---CCCCC
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL---DEHGH  166 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl---~~~~~  166 (334)
                      +|+ + +.+.... ..........++.++.|++.||.|||+++                |+||||||+||++   +.++.
T Consensus       103 ~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~qi~~~L~~LH~~~----------------ivH~dikp~NIl~~~~~~~~~  165 (285)
T 3is5_A          103 EGGELLERIVSAQ-ARGKALSEGYVAELMKQMMNALAYFHSQH----------------VVHKDLKPENILFQDTSPHSP  165 (285)
T ss_dssp             SCCBHHHHHHHHH-HHTCCCCHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCSGGGEEESSSSTTCC
T ss_pred             CCCcHHHHHHhhh-hcccCCCHHHHHHHHHHHHHHHHHHHhCC----------------EEECCCCHHHEEEecCCCCCC
Confidence            987 3 3343221 11122355666778889999999999999                9999999999999   45578


Q ss_pred             EEEEecccccccCCCC-CCccccCccccccccccccCC-cceeeh---hHHHHHcCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK-PHASVESDCILHGYIKKLGGP-FVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       167 vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~~~~-~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +||+|||+++...... .....||+.|++||+....++ .+|+|+   ++|+++. +..||.+.
T Consensus       166 ~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~-g~~pf~~~  228 (285)
T 3is5_A          166 IKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLT-GCLPFTGT  228 (285)
T ss_dssp             EEECCCCCCCC----------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHH-SSCSSCCS
T ss_pred             EEEEeeecceecCCcccCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHh-CCCCCCCC
Confidence            9999999998765543 344568999999998665555 455555   5556655 56676554

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.96  E-value=4.6e-30  Score=239.92  Aligned_cols=242  Identities=15%  Similarity=0.035  Sum_probs=168.2

Q ss_pred             CCCceEEEece-----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCC-eE
Q psy6542          12 RVSKWRVKPPS-----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPN-SH   84 (334)
Q Consensus        12 ~~~~~~V~~a~-----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~-~~   84 (334)
                      +++.+.||+|.     +..+++.||||+++..... ...+.+.+|+++++.+ +||||        +++++++.+.+ .+
T Consensus        32 ~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~~hpni--------v~~~~~~~~~~~~~  102 (359)
T 3vhe_A           32 RGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH-SEHRALMSELKILIHIGHHLNV--------VNLLGACTKPGGPL  102 (359)
T ss_dssp             ECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCH-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSTTSCC
T ss_pred             CCCCceEEEEEeccccccccceEEEEEEecCcCCH-HHHHHHHHHHHHHHhhcCCcce--------eeeeeeeecCCCce
Confidence            47888999998     6778899999999865432 2345788899999999 78999        99999988754 59


Q ss_pred             EEEEEccCCC-hhHHhhhhhhh----------------------------------------------------------
Q psy6542          85 YIIGVRQSGP-KDQISRSKINR----------------------------------------------------------  105 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~----------------------------------------------------------  105 (334)
                      |+||||++|+ +..+.......                                                          
T Consensus       103 ~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (359)
T 3vhe_A          103 MVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAP  182 (359)
T ss_dssp             EEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------------------
T ss_pred             EEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccc
Confidence            9999999998 43333322110                                                          


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCC
Q psy6542         106 ----YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKK  181 (334)
Q Consensus       106 ----~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~  181 (334)
                          ........++.++.|++.||.|||+++                |+||||||+|||++.++.+||+|||+++.....
T Consensus       183 ~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~----------------ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~  246 (359)
T 3vhe_A          183 EDLYKDFLTLEHLICYSFQVAKGMEFLASRK----------------CIHRDLAARNILLSEKNVVKICDFGLARDIYKD  246 (359)
T ss_dssp             -CTTTTCBCHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSC
T ss_pred             cchhccccCHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCChhhEEEcCCCcEEEEeccceeeeccc
Confidence                000345567788889999999999999                999999999999999999999999999866443


Q ss_pred             C----CCccccCccccccccc-cccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccccccccccHhHH
Q psy6542         182 K----PHASVESDCILHGYIK-KLGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGE  252 (334)
Q Consensus       182 ~----~~~~~~t~~~~~~~v~-~~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  252 (334)
                      .    .....||+.|++||+. ...+ ..+|+|+   ++|+++..+..||.+.......                    .
T Consensus       247 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~--------------------~  306 (359)
T 3vhe_A          247 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF--------------------C  306 (359)
T ss_dssp             TTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH--------------------H
T ss_pred             ccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHH--------------------H
Confidence            3    2234567889999974 3333 4566666   6666655577787554321000                    0


Q ss_pred             HHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         253 QCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       253 ~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                      ..+....          ..+.....++.+.+  +...|...+|..|+ +.++++++...
T Consensus       307 ~~~~~~~----------~~~~~~~~~~~l~~--li~~~l~~dP~~Rps~~ell~~L~~~  353 (359)
T 3vhe_A          307 RRLKEGT----------RMRAPDYTTPEMYQ--TMLDCWHGEPSQRPTFSELVEHLGNL  353 (359)
T ss_dssp             HHHHHTC----------CCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHcCC----------CCCCCCCCCHHHHH--HHHHHccCChhhCCCHHHHHHHHHHH
Confidence            0010000          00011223334444  67778888888888 88888887664

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.96  E-value=6.8e-30  Score=241.69  Aligned_cols=242  Identities=12%  Similarity=0.054  Sum_probs=170.3

Q ss_pred             CCCceEEEeceeCCCC-------CcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPPSLKPLG-------FPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~-------~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      +++.+.||+|.+..++       ..||||+++..... ...+.+.+|+++++.+ +||||        +++++++.+++.
T Consensus        79 ~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~~hpnI--------v~~~~~~~~~~~  149 (382)
T 3tt0_A           79 EGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNI--------INLLGACTQDGP  149 (382)
T ss_dssp             ECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCH-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSS
T ss_pred             cCCCeEEEEEEEccccccccccceEEEEEeeccccCH-HHHHHHHHHHHHHHHhcCCchh--------hhheeeeccCCc
Confidence            4778899999976443       57999999866443 3445788899999999 99999        999999999999


Q ss_pred             EEEEEEccCCC-hhHHhhhhhh------------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE
Q psy6542          84 HYIIGVRQSGP-KDQISRSKIN------------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH  150 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~~~~------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii  150 (334)
                      +|+||||++|+ +..+......            .........++.++.|++.||.|||+++                |+
T Consensus       150 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~----------------iv  213 (382)
T 3tt0_A          150 LYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK----------------CI  213 (382)
T ss_dssp             CEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT----------------CC
T ss_pred             eEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC----------------Ee
Confidence            99999999987 5443332210            0012355666778889999999999999                99


Q ss_pred             eeCCCCCceeeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCC
Q psy6542         151 FRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       151 HrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~  221 (334)
                      ||||||+|||++.++.+||+|||+|+......    .....+|+.|++||+.. ..++ .+|+|+   ++|+++..+..|
T Consensus       214 H~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p  293 (382)
T 3tt0_A          214 HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP  293 (382)
T ss_dssp             CSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             cCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999998765432    23345578899999843 3344 566666   667777657777


Q ss_pred             CCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-h
Q psy6542         222 LHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-S  300 (334)
Q Consensus       222 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~  300 (334)
                      |.+.+...                         +...+....      ........++.+..  +...|...+|..|+ +
T Consensus       294 ~~~~~~~~-------------------------~~~~~~~~~------~~~~~~~~~~~l~~--li~~~l~~dP~~Rps~  340 (382)
T 3tt0_A          294 YPGVPVEE-------------------------LFKLLKEGH------RMDKPSNCTNELYM--MMRDCWHAVPSQRPTF  340 (382)
T ss_dssp             STTCCHHH-------------------------HHHHHHTTC------CCCCCSSCCHHHHH--HHHHHTCSSGGGSCCH
T ss_pred             CCCCCHHH-------------------------HHHHHHcCC------CCCCCccCCHHHHH--HHHHHcCCChhhCcCH
Confidence            65433110                         011110000      00011223344444  77888888999998 7


Q ss_pred             HHHHHHHHHHh
Q psy6542         301 QELLGSMARKA  311 (334)
Q Consensus       301 ~~lL~~l~~~~  311 (334)
                      .++++++.+..
T Consensus       341 ~ell~~L~~~~  351 (382)
T 3tt0_A          341 KQLVEDLDRIV  351 (382)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887776653

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.96  E-value=3.5e-30  Score=237.43  Aligned_cols=245  Identities=14%  Similarity=0.024  Sum_probs=156.6

Q ss_pred             CCCceEEEeceeCCCCC---cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeE----
Q psy6542          12 RVSKWRVKPPSLKPLGF---PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSH----   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~---~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~----   84 (334)
                      +++.+.||+|.+..++.   .||||+++.........+.+.+|+++++.++||||        +++++++...+..    
T Consensus        33 ~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~  104 (323)
T 3qup_A           33 KGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHV--------AKLVGVSLRSRAKGRLP  104 (323)
T ss_dssp             EETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTB--------CCCCEEEECC-------
T ss_pred             ccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCce--------ehhhceeeccccccCCC
Confidence            46778999999988776   89999998765544456678899999999999999        9999999876654    


Q ss_pred             --EEEEEccCCC-hhHHhh-hhhhh-hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          85 --YIIGVRQSGP-KDQISR-SKINR-YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        85 --~ivmEy~~g~-l~~l~~-~~~~~-~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                        ++||||+.|+ +..+.. ..... ........++.++.|++.||.|||+++                |+||||||+||
T Consensus       105 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~----------------ivH~Dikp~NI  168 (323)
T 3qup_A          105 IPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRN----------------FIHRDLAARNC  168 (323)
T ss_dssp             CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGE
T ss_pred             ccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCC----------------cccCCCCcceE
Confidence              9999999997 433332 22111 012355666788889999999999999                99999999999


Q ss_pred             eeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCc
Q psy6542         160 LLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSK  230 (334)
Q Consensus       160 Ll~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~  230 (334)
                      |++.++.+||+|||+++.......    ....+++.|++||+.. ..++ .+|+|+   ++|+++..+..||.+......
T Consensus       169 li~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~  248 (323)
T 3qup_A          169 MLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEI  248 (323)
T ss_dssp             EECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH
T ss_pred             EEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHH
Confidence            999999999999999987654432    2334567899999843 3344 556666   667777768888765442111


Q ss_pred             ccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         231 PELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                      ...+....                               ..+..+..++.+..  +...+...+|..|+ +.++++.+..
T Consensus       249 ~~~~~~~~-------------------------------~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~~l~~~l~~  295 (323)
T 3qup_A          249 YNYLIGGN-------------------------------RLKQPPECMEEVYD--LMYQCWSADPKQRPSFTCLRMELEN  295 (323)
T ss_dssp             HHHHHTTC-------------------------------CCCCCTTCCHHHHH--HHHHTTCSSGGGSCCHHHHHHHHHH
T ss_pred             HHHHhcCC-------------------------------CCCCCCccCHHHHH--HHHHHccCChhhCcCHHHHHHHHHH
Confidence            11110000                               00112233344444  77788888888888 7777777766


Q ss_pred             HhCC
Q psy6542         310 KAGK  313 (334)
Q Consensus       310 ~~~~  313 (334)
                      ....
T Consensus       296 ~l~~  299 (323)
T 3qup_A          296 ILGH  299 (323)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            5433

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.96  E-value=4.5e-30  Score=240.19  Aligned_cols=181  Identities=20%  Similarity=0.204  Sum_probs=128.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+++.||||+++....    .+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        63 ~G~~g~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~lv~e~~  130 (349)
T 2w4o_A           63 RGATSIVYRCKQKGTQKPYALKVLKKTVD----KKIVRTEIGVLLRLSHPNI--------IKLKEIFETPTEISLVLELV  130 (349)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEC--------------CHHHHHCCCTTB--------CCEEEEEECSSEEEEEECCC
T ss_pred             eCCCEEEEEEEECCCCcEEEEEEeccchh----HHHHHHHHHHHHhCCCCCC--------cceeeeEecCCeEEEEEEeC
Confidence            46778999999999999999999986432    3456789999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC---CCC
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE---HGH  166 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~---~~~  166 (334)
                      +|+ + +.+...  ..+   ....++.++.|++.||.|||+++                |+||||||+|||++.   ++.
T Consensus       131 ~~~~L~~~l~~~--~~~---~~~~~~~i~~qi~~~L~~LH~~~----------------ivH~Dikp~NIll~~~~~~~~  189 (349)
T 2w4o_A          131 TGGELFDRIVEK--GYY---SERDAADAVKQILEAVAYLHENG----------------IVHRDLKPENLLYATPAPDAP  189 (349)
T ss_dssp             CSCBHHHHHTTC--SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEESSSSTTCC
T ss_pred             CCCCHHHHHHhc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEecCCCcccEEEecCCCCCC
Confidence            987 4 333221  122   44556677889999999999999                999999999999976   789


Q ss_pred             EEEEecccccccCCCC-CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK-PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +||+|||+++...... .....||+.|++||+...  ....+|+|+   ++|++++ +..||....
T Consensus       190 ~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~  254 (349)
T 2w4o_A          190 LKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLC-GFEPFYDER  254 (349)
T ss_dssp             EEECCCC----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCTTCCTT
T ss_pred             EEEccCccccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHh-CCCCCCCCc
Confidence            9999999998765543 344678999999998543  244666666   5566655 455665544

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.96  E-value=7.3e-31  Score=247.40  Aligned_cols=183  Identities=19%  Similarity=0.160  Sum_probs=143.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeE------E
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSH------Y   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~------~   85 (334)
                      +++...||+|.++.+|+.||||++..........+.+.+|+.+++.++||||        +++++++...+..      |
T Consensus        52 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~~~~~~~  123 (371)
T 4exu_A           52 SGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENV--------IGLLDVFTPASSLRNFYDFY  123 (371)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTB--------CCCSEEECSCSSSTTCCCCE
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCc--------hhhhhheeccCCcccceeEE
Confidence            5778899999999999999999998776666667788899999999999999        9999999877654      9


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||||+.|++......   .+   ....+..++.|++.||.|||+++                |+||||||+|||++.++
T Consensus       124 lv~e~~~~~l~~~~~~---~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~Dikp~NIll~~~~  181 (371)
T 4exu_A          124 LVMPFMQTDLQKIMGM---EF---SEEKIQYLVYQMLKGLKYIHSAG----------------VVHRDLKPGNLAVNEDC  181 (371)
T ss_dssp             EEEECCCEEHHHHTTS---CC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTC
T ss_pred             EEEccccccHHHHhhc---CC---CHHHHHHHHHHHHHHHHHHHHCC----------------CcCCCcCHHHeEECCCC
Confidence            9999999885444322   22   45556677889999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++..... .....||+.|++||+...  . ...+|+|+   ++|+++. +..||.+.+
T Consensus       182 ~~kL~Dfg~a~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~  246 (371)
T 4exu_A          182 ELKILDFGLARHADAE-MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLT-GKTLFKGKD  246 (371)
T ss_dssp             CEEECSTTCC---------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             CEEEEecCcccccccC-cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHh-CCCCCCCCC
Confidence            9999999999866544 334567999999998532  3 44566666   5555554 666876654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.96  E-value=5.5e-30  Score=250.54  Aligned_cols=236  Identities=11%  Similarity=0.036  Sum_probs=171.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.++..||||.++.....   .+.+.+|+++|+.++||||        +++++++.+.+.+||||||+
T Consensus       230 ~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpni--------v~l~~~~~~~~~~~lv~E~~  298 (495)
T 1opk_A          230 GGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNL--------VQLLGVCTREPPFYIITEFM  298 (495)
T ss_dssp             GGTTSSEEEEEEGGGTEEEEEEECCSSSSC---HHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCEEEEECC
T ss_pred             CCCCeEEEEEEEcCCCeEEEEEEecCcccc---hHHHHHHHHHHHhcCCCCE--------eeEEEEEecCCcEEEEEEcc
Confidence            466779999999999999999999865442   3467889999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .|+ + +++.......   .....++.++.|++.||.|||+++                |+||||||+|||++.++.+||
T Consensus       299 ~~g~L~~~l~~~~~~~---~~~~~~~~i~~qi~~~L~~LH~~~----------------ivHrDlkp~NIll~~~~~~kl  359 (495)
T 1opk_A          299 TYGNLLDYLRECNRQE---VSAVVLLYMATQISSAMEYLEKKN----------------FIHRNLAARNCLVGENHLVKV  359 (495)
T ss_dssp             TTCBHHHHHHHSCTTT---SCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECGGGCEEE
T ss_pred             CCCCHHHHHHhcCcCC---CCHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCChhhEEECCCCcEEE
Confidence            987 4 3443222122   245556778889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC---CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKKP---HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||+++.......   ....++..|++||+.. .. ...+|+|+   ++|+++..+..||.+.+.....          
T Consensus       360 ~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~----------  429 (495)
T 1opk_A          360 ADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY----------  429 (495)
T ss_dssp             CCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH----------
T ss_pred             eecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHH----------
Confidence            99999987654432   2233467899999853 22 44566666   7777777678787654311100          


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                 ..+....      ++.    ....+++.+.+  ++.+|...+|..|+ +.++++.+...
T Consensus       430 -----------~~~~~~~------~~~----~~~~~~~~l~~--li~~cl~~dP~~RPs~~el~~~L~~~  476 (495)
T 1opk_A          430 -----------ELLEKDY------RME----RPEGCPEKVYE--LMRACWQWNPSDRPSFAEIHQAFETM  476 (495)
T ss_dssp             -----------HHHHTTC------CCC----CCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             -----------HHHHcCC------CCC----CCCCCCHHHHH--HHHHHcCcChhHCcCHHHHHHHHHHH
Confidence                       0111000      011    11233444455  67777888888888 78888777654

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.96  E-value=1.1e-29  Score=231.03  Aligned_cols=183  Identities=13%  Similarity=0.033  Sum_probs=142.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+..+|+.||||++.....    .+.+.+|+.+++.+ +|+|+        +++++++.++...|+||||
T Consensus        20 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~e~~~~~~l~~~~~i--------~~~~~~~~~~~~~~lv~e~   87 (298)
T 1csn_A           20 EGSFGVIFEGTNLLNNQQVAIKFEPRRSD----APQLRDEYRTYKLLAGCTGI--------PNVYYFGQEGLHNVLVIDL   87 (298)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEEEEECCTT----SCCHHHHHHHHHHTTTCTTC--------CCEEEEEEETTEEEEEEEC
T ss_pred             ecCCEEEEEEEECCCCcEEEEEEeccCCc----cHHHHHHHHHHHHHhcCCCC--------CeEEeecCCCceeEEEEEe
Confidence            46778999999999999999999975443    34567799999999 79999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC----
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH----  166 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~----  166 (334)
                      +.+++..+.......+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.    
T Consensus        88 ~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------ivH~Dlkp~NIl~~~~~~~~~~  148 (298)
T 1csn_A           88 LGPSLEDLLDLCGRKF---SVKTVAMAAKQMLARVQSIHEKS----------------LVYRDIKPDNFLIGRPNSKNAN  148 (298)
T ss_dssp             CCCBHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHHTTT----------------EECCCCCGGGEEECCSSSTTTT
T ss_pred             cCCCHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EecCCCCHHHEEeccCCCCCCC
Confidence            9555554444322223   45566778889999999999999                999999999999988776    


Q ss_pred             -EEEEecccccccCCCC---------CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 -VRISDLGLACDFSKKK---------PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 -vkl~DFGla~~~~~~~---------~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                       +||+|||+++......         .....||+.|++||+.. .. ...+|+|+   ++|+++ ++..||.+.+
T Consensus       149 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~-~g~~pf~~~~  222 (298)
T 1csn_A          149 MIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFL-RGSLPWQGLK  222 (298)
T ss_dssp             CEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHH-HSSCTTSSCC
T ss_pred             eEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHH-cCCCCcchhh
Confidence             9999999998765442         23456899999999853 23 34566666   556665 5666776544

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.96  E-value=4.4e-30  Score=236.86  Aligned_cols=187  Identities=13%  Similarity=0.027  Sum_probs=142.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+. +|+.||||.+......  ..+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        49 ~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~  117 (321)
T 2qkw_B           49 HGVFGKVYKGVLR-DGAKVALKRRTPESSQ--GIEEFETEIETLSFCRHPHL--------VSLIGFCDERNEMILIYKYM  117 (321)
T ss_dssp             BCSSSEEEEEECT-TCCEEEEEECCSCCSS--HHHHHHHHHHGGGSCCCTTB--------CCEEEECCCTTCCEEEEECC
T ss_pred             cCCCeeEEEEEEC-CCCEEEEEEecccChH--HHHHHHHHHHHHHhCCCCCE--------eeEEEEEcCCCeEEEEEEcC
Confidence            5677899999965 6999999998765433  34567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+................+.++.|++.||.|||+++                |+||||||+||+++.++.+||+
T Consensus       118 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~----------------ivH~dlkp~Nil~~~~~~~kl~  181 (321)
T 2qkw_B          118 ENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA----------------IIHRDVKSINILLDENFVPKIT  181 (321)
T ss_dssp             TTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCSTTEEECTTCCEEEC
T ss_pred             CCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCC----------------eecCCCCHHHEEECCCCCEEEe
Confidence            987 43332222111112345566778889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC----CCccccCccccccccc--cccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK----PHASVESDCILHGYIK--KLGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~----~~~~~~t~~~~~~~v~--~~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+++......    .....||+.|++||+.  ......+|+|+   ++|++++ +..||.+..
T Consensus       182 Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~-g~~p~~~~~  245 (321)
T 2qkw_B          182 DFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLC-ARSAIVQSL  245 (321)
T ss_dssp             CCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHH-CCTTCSCSS
T ss_pred             ecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHh-CCCcccccC
Confidence            999998654322    2334578999999984  23345566666   5666655 455665443

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.96  E-value=5.4e-30  Score=231.98  Aligned_cols=185  Identities=17%  Similarity=0.191  Sum_probs=146.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+..+++.||||++..... .......+.+|+++++.++||||        +++++++.+++.+|+||||
T Consensus        24 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~   95 (284)
T 2vgo_A           24 KGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNI--------LRMYNYFHDRKRIYLMLEF   95 (284)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCE--------eeEEEEEEcCCEEEEEEEe
Confidence            46778999999999999999999975432 12234567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +....... ..+   ....++.++.|++.||.|||+++                ++||||||+||+++.++.+||
T Consensus        96 ~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dl~p~Nil~~~~~~~kl  155 (284)
T 2vgo_A           96 APRGELYKELQKH-GRF---DEQRSATFMEELADALHYCHERK----------------VIHRDIKPENLLMGYKGELKI  155 (284)
T ss_dssp             CTTEEHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHTTT----------------EECCCCSGGGEEECTTCCEEE
T ss_pred             CCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ceecCCCHHHEEEcCCCCEEE
Confidence            9987 43332221 123   45556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||++............|++.|++||+...  ....+|+|+   ++|+++. +..||...
T Consensus       156 ~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~  215 (284)
T 2vgo_A          156 ADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLV-GMPPFDSP  215 (284)
T ss_dssp             CCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHH-SSCTTCCS
T ss_pred             ecccccccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHH-CCCCCCCC
Confidence            9999998776665666778999999998532  245666676   5566554 55566443

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.96  E-value=8.3e-30  Score=230.98  Aligned_cols=233  Identities=11%  Similarity=0.038  Sum_probs=169.6

Q ss_pred             CCCceEEEeceeCCCCC-------cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeE
Q psy6542          12 RVSKWRVKPPSLKPLGF-------PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~-------~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      +++...||+|.++.+++       .||+|++.....  ...+.+.+|+++++.++||||        +++++++.+++..
T Consensus        18 ~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~--~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~   87 (289)
T 4fvq_A           18 QGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHR--NYSESFFEAASMMSKLSHKHL--------VLNYGVCVCGDEN   87 (289)
T ss_dssp             EETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGG--GGHHHHHHHHHHHHTSCCTTB--------CCEEEEECCTTCC
T ss_pred             cCCCceEEEEEEecccccccccchhhhhhhcccccH--HHHHHHHHHHHHHHhCCCCCE--------eEEEEEEEeCCCC
Confidence            46788999999998884       699999975432  244568889999999999999        9999999999999


Q ss_pred             EEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          85 YIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      |+||||++|+ +..+.......+   .....+.++.|++.||.|||+++                |+||||||+|||++.
T Consensus        88 ~lv~e~~~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~~L~~LH~~~----------------ivH~Dlkp~NIll~~  148 (289)
T 4fvq_A           88 ILVQEFVKFGSLDTYLKKNKNCI---NILWKLEVAKQLAAAMHFLEENT----------------LIHGNVCAKNILLIR  148 (289)
T ss_dssp             EEEEECCTTCBHHHHHHHTGGGC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEEEE
T ss_pred             EEEEECCCCCCHHHHHHhCCCCC---CHHHHHHHHHHHHHHHHHHhhCC----------------eECCCcCcceEEEec
Confidence            9999999976 544434332223   44556677889999999999999                999999999999998


Q ss_pred             CCC--------EEEEecccccccCCCCCCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCC
Q psy6542         164 HGH--------VRISDLGLACDFSKKKPHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQS  229 (334)
Q Consensus       164 ~~~--------vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~  229 (334)
                      ++.        +||+|||++......  ....|+..|++||+..  .. +..+|+|+   ++|+++.++.+|+...... 
T Consensus       149 ~~~~~~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~-  225 (289)
T 4fvq_A          149 EEDRKTGNPPFIKLSDPGISITVLPK--DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQ-  225 (289)
T ss_dssp             CCBGGGTBCCEEEECCCCSCTTTSCH--HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-
T ss_pred             CCcccccccceeeeccCcccccccCc--cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchH-
Confidence            887        999999999755433  2345788899999853  33 44566666   7777777677665332200 


Q ss_pred             cccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHH
Q psy6542         230 KPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMA  308 (334)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~  308 (334)
                                             . ........    ..    .....++.+.+  +...+...+|..|+ +.++++++.
T Consensus       226 -----------------------~-~~~~~~~~----~~----~~~~~~~~l~~--li~~~l~~dp~~Rps~~~ll~~l~  271 (289)
T 4fvq_A          226 -----------------------R-KLQFYEDR----HQ----LPAPKAAELAN--LINNCMDYEPDHRPSFRAIIRDLN  271 (289)
T ss_dssp             -----------------------H-HHHHHHTT----CC----CCCCSSCTTHH--HHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred             -----------------------H-HHHHhhcc----CC----CCCCCCHHHHH--HHHHHcCCChhHCcCHHHHHHHHH
Confidence                                   0 00000000    00    11223455555  78888888999999 889999887


Q ss_pred             HH
Q psy6542         309 RK  310 (334)
Q Consensus       309 ~~  310 (334)
                      +.
T Consensus       272 ~l  273 (289)
T 4fvq_A          272 SL  273 (289)
T ss_dssp             TC
T ss_pred             Hh
Confidence            74

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.96  E-value=1.7e-29  Score=231.45  Aligned_cols=188  Identities=18%  Similarity=0.171  Sum_probs=134.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+..+|+.||||+++.... +......+.+|+++++.++||||        +++++++.+++.+|+||||
T Consensus        42 ~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~  113 (310)
T 2wqm_A           42 RGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNV--------IKYYASFIEDNELNIVLEL  113 (310)
T ss_dssp             CC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTB--------CCEEEEEEETTEEEEEEEC
T ss_pred             CCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCE--------eeEEEEEEcCCcEEEEEec
Confidence            46778999999999999999999986543 44456678899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+...............++.++.|++.||.|||+++                ++||||||+||+++.++.+||
T Consensus       114 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~----------------i~H~dl~p~NIl~~~~~~~kl  177 (310)
T 2wqm_A          114 ADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR----------------VMHRDIKPANVFITATGVVKL  177 (310)
T ss_dssp             CCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTTSCEEE
T ss_pred             CCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCC----------------eeCCCCcHHHEEEcCCCCEEE
Confidence            9987 54443322111122345666778889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|||+++......  .....|++.|++||+.. ..+ ..+|+|+   ++|+++.+ ..||.+
T Consensus       178 ~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g-~~p~~~  238 (310)
T 2wqm_A          178 GDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL-QSPFYG  238 (310)
T ss_dssp             CCC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS-SCTTC-
T ss_pred             EeccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhC-CCCCcc
Confidence            9999998665443  23456789999999843 333 4556666   55666554 456544

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.96  E-value=4.3e-30  Score=232.43  Aligned_cols=237  Identities=11%  Similarity=0.029  Sum_probs=157.5

Q ss_pred             CCCceEEEeceeCCC---CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPL---GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~---~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++.+.||+|.+..+   +..||||.++.... ....+.+.+|+.+++.++||||        +++++++. ++.+|+||
T Consensus        25 ~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~-~~~~~lv~   94 (281)
T 1mp8_A           25 EGQFGDVHQGIYMSPENPALAVAIKTCKNCTS-DSVREKFLQEALTMRQFDHPHI--------VKLIGVIT-ENPVWIIM   94 (281)
T ss_dssp             ECSSSEEEEEEECCC--CCEEEEEEECTTTTS-HHHHHHHHHHHHHHHTCCCTTB--------CCEEEEEC-SSSCEEEE
T ss_pred             ecCCeeEEEEEEecCCCCceEEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCcc--------ceEEEEEc-cCccEEEE
Confidence            467789999998764   45699999876443 3345678899999999999999        99999984 56789999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||++|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.+
T Consensus        95 e~~~~~~L~~~l~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dlkp~Nil~~~~~~~  155 (281)
T 1mp8_A           95 ELCTLGELRSFLQVRKYSL---DLASLILYAYQLSTALAYLESKR----------------FVHRDIAARNVLVSSNDCV  155 (281)
T ss_dssp             ECCTTEEHHHHHHHTTTTS---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEEEETTEE
T ss_pred             ecCCCCCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecccccHHHEEECCCCCE
Confidence            999987 444333222122   45556677889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCC---CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccc
Q psy6542         168 RISDLGLACDFSKKKP---HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQI  239 (334)
Q Consensus       168 kl~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  239 (334)
                      ||+|||+++.......   ....+++.|++||+.. ..++ .+|+|+   ++|++++.+..||.+.......        
T Consensus       156 kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~--------  227 (281)
T 1mp8_A          156 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVI--------  227 (281)
T ss_dssp             EECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHH--------
T ss_pred             EECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHH--------
Confidence            9999999987654432   2334567899999853 3344 556666   6777777788887654321100        


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                   ..+..   .       ...+..+.+++.+..  +...+...+|..|+ +.++++.+...
T Consensus       228 -------------~~i~~---~-------~~~~~~~~~~~~l~~--li~~~l~~~p~~Rps~~~l~~~l~~~  274 (281)
T 1mp8_A          228 -------------GRIEN---G-------ERLPMPPNCPPTLYS--LMTKCWAYDPSRRPRFTELKAQLSTI  274 (281)
T ss_dssp             -------------HHHHT---T-------CCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -------------HHHHc---C-------CCCCCCCCCCHHHHH--HHHHHccCChhhCcCHHHHHHHHHHH
Confidence                         00100   0       000112334444445  77788888888888 77777776653

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.96  E-value=2.8e-30  Score=243.82  Aligned_cols=189  Identities=13%  Similarity=0.136  Sum_probs=135.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHH---HHHHhcCCCCcccccccceeeEE-------EEeec
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQ---EIFNHLRNEPFKKCVLLFKMNLY-------KVTSE   80 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~---~il~~l~h~~i~~~~~~~~v~~~-------~~~~~   80 (334)
                      +++.+.||+|.++.+|+.||||++..... .....+.+.+|+   ++++.++||||        |+++       +++.+
T Consensus        83 ~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpni--------v~~~~~~~~~~~~~~~  154 (377)
T 3byv_A           83 QEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQ--------AKVHLRFIFPFDLVKD  154 (377)
T ss_dssp             EETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHH--------HHHHHCBCCCSEEEEC
T ss_pred             cCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHH--------HHHHhhhhhhhhhhhc
Confidence            36778999999999999999999986543 333556788899   55566689999        8777       66665


Q ss_pred             CC-----------------eEEEEEEccCCChhHHhhhhhhhhh----HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhh
Q psy6542          81 PN-----------------SHYIIGVRQSGPKDQISRSKINRYH----KKLRKCFIRRTVQLLEPVHTCHSALNKNPLIA  139 (334)
Q Consensus        81 ~~-----------------~~~ivmEy~~g~l~~l~~~~~~~~~----~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~  139 (334)
                      .+                 ..|+||||++|++..+.... ..+.    .......+.++.||+.||.|||+++       
T Consensus       155 ~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~-~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~-------  226 (377)
T 3byv_A          155 PQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVL-LSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG-------  226 (377)
T ss_dssp             TTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHH-HHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred             cCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhc-cccccccccccHHHHHHHHHHHHHHHHHHHhCC-------
Confidence            53                 28999999976654433322 1121    1234556678889999999999999       


Q ss_pred             hhhcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCCCccccCcccccccccc-c-----------cCC-cce
Q psy6542         140 IFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKK-L-----------GGP-FVS  206 (334)
Q Consensus       140 ~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~-----------~~~-~~~  206 (334)
                               |+||||||+|||++.++.+||+|||+|+..... .....| +.|++||+.. .           .++ .+|
T Consensus       227 ---------ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~D  295 (377)
T 3byv_A          227 ---------LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAR-VVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFD  295 (377)
T ss_dssp             ---------EECSCCCGGGEEECTTCCEEECCGGGCEETTCE-EECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHH
T ss_pred             ---------eecCCCCHHHEEEcCCCCEEEEechhheecCCc-ccCCCC-cCccChhhhcccccccccccccccCChhhh
Confidence                     999999999999999999999999999865442 334567 8999999843 2           344 556


Q ss_pred             eeh---hHHHHHcCCCCCCCCCCCC
Q psy6542         207 AWQ---TRYAKLFPNRLELHPESGQ  228 (334)
Q Consensus       207 ~w~---~~~~~l~~~~~~~~~~~~~  228 (334)
                      +|+   ++|++++ +..||.+.+..
T Consensus       296 vwSlG~il~ellt-g~~Pf~~~~~~  319 (377)
T 3byv_A          296 AWALGLVIYWIWC-ADLPITKDAAL  319 (377)
T ss_dssp             HHHHHHHHHHHHH-SSCCC------
T ss_pred             HHHHHHHHHHHHH-CCCCCcccccc
Confidence            666   5666655 67787665543

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=1.8e-29  Score=238.78  Aligned_cols=184  Identities=16%  Similarity=0.109  Sum_probs=140.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-----------
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-----------   80 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-----------   80 (334)
                      +++.+.||+|.+..+|+.||||++.....      ...+|+++++.++||||        +++++++..           
T Consensus        17 ~G~fg~V~~a~~~~~~~~vAiK~~~~~~~------~~~~E~~il~~l~hpnI--------v~l~~~~~~~~~~~~~~~~~   82 (383)
T 3eb0_A           17 TGSFGIVCEVFDIESGKRFALKKVLQDPR------YKNRELDIMKVLDHVNI--------IKLVDYFYTTGDEEPKPPQP   82 (383)
T ss_dssp             CC-CEEEEEEEETTTCCEEEEEEEECCTT------SCCHHHHHHTTCCCTTB--------CCEEEEEEEC----------
T ss_pred             eccCEEEEEEEECCCCCEEEEEEEecCcc------hHHHHHHHHHHcCCCCc--------cchhheeeecCccccccccc
Confidence            57888999999999999999999975433      22359999999999999        999999843           


Q ss_pred             ---------------------------CCeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy6542          81 ---------------------------PNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALN  133 (334)
Q Consensus        81 ---------------------------~~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~  133 (334)
                                                 +..+++||||++|++..................+..++.||+.||.|||+++ 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~g-  161 (383)
T 3eb0_A           83 PDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLG-  161 (383)
T ss_dssp             ---------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             ccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCc-
Confidence                                       3458999999998854433332222222345566677889999999999999 


Q ss_pred             CCchhhhhhcCCCCcEEeeCCCCCceeeC-CCCCEEEEecccccccCCCC-CCccccCcccccccccc--c-cCCcceee
Q psy6542         134 KNPLIAIFLTLSVPCLHFRDLKPANILLD-EHGHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK--L-GGPFVSAW  208 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~iiHrDlKp~NiLl~-~~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~--~-~~~~~~~w  208 (334)
                                     |+||||||+|||++ .++.+||+|||+|+...... .....+|+.|++||+..  . .+..+|+|
T Consensus       162 ---------------i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Diw  226 (383)
T 3eb0_A          162 ---------------ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLW  226 (383)
T ss_dssp             ---------------EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHH
T ss_pred             ---------------CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhh
Confidence                           99999999999997 67899999999999765544 34467799999999743  2 34456666


Q ss_pred             h---hHHHHHcCCCCCCCCCC
Q psy6542         209 Q---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       209 ~---~~~~~l~~~~~~~~~~~  226 (334)
                      +   ++|+++. +.+||.+.+
T Consensus       227 slG~il~ell~-g~~pf~~~~  246 (383)
T 3eb0_A          227 SIGCVFGELIL-GKPLFSGET  246 (383)
T ss_dssp             HHHHHHHHHHH-SSCSSCCSS
T ss_pred             hHHHHHHHHHh-CCCCCCCCC
Confidence            6   5556555 667887654

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.96  E-value=1.4e-29  Score=230.85  Aligned_cols=252  Identities=15%  Similarity=0.060  Sum_probs=167.9

Q ss_pred             CCCceEEEece----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEE
Q psy6542          12 RVSKWRVKPPS----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~   85 (334)
                      +++.+.||+|.    +..+|+.||||+++...... ..+.+.+|+++++.++||||        +++++++.+.  +.+|
T Consensus        31 ~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~  101 (302)
T 4e5w_A           31 EGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGN-HIADLKKEIEILRNLYHENI--------VKYKGICTEDGGNGIK  101 (302)
T ss_dssp             ECSSEEEEEEEECTTSSSCSEEEEEEEEC-----C-CHHHHHHHHHHHHTCCCTTB--------CCEEEEEEC---CCEE
T ss_pred             CCCceEEEEEEEccccCccCeEEEEEEecccccch-hHHHHHHHHHHHHhCCCCCe--------eeeeeEEecCCCceEE
Confidence            57788999998    78899999999998654322 33567889999999999999        9999999876  6799


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +..+.......+   .....+.++.|++.||.|||+++                |+||||||+||+++.+
T Consensus       102 lv~e~~~~~~L~~~l~~~~~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dikp~Nil~~~~  162 (302)
T 4e5w_A          102 LIMEFLPSGSLKEYLPKNKNKI---NLKQQLKYAVQICKGMDYLGSRQ----------------YVHRDLAARNVLVESE  162 (302)
T ss_dssp             EEEECCTTCBHHHHHHHHTTTC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEEET
T ss_pred             EEEEeCCCCcHHHHHHhccccC---CHHHHHHHHHHHHHHHHHhhcCC----------------cccCCCchheEEEcCC
Confidence            999999887 544433322233   45556777889999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCC-----CCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         165 GHVRISDLGLACDFSKKK-----PHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      +.+||+|||+++......     .....+|..|++||+.. . .+..+|+|+   ++|+++.+.. |+..      +...
T Consensus       163 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~------~~~~  235 (302)
T 4e5w_A          163 HQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCD-SDSS------PMAL  235 (302)
T ss_dssp             TEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTC-GGGS------HHHH
T ss_pred             CCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccC-CCcc------hhhH
Confidence            999999999998775543     22345677899999742 2 244566666   6666655433 3211      0000


Q ss_pred             hcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         235 FMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                      ......... ..   .....+...+..      ....+..+.+++.+.+  +...+...+|..|+ +.++++.+...
T Consensus       236 ~~~~~~~~~-~~---~~~~~~~~~~~~------~~~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~~ll~~L~~l  300 (302)
T 4e5w_A          236 FLKMIGPTH-GQ---MTVTRLVNTLKE------GKRLPCPPNCPDEVYQ--LMRKCWEFQPSNRTSFQNLIEGFEAL  300 (302)
T ss_dssp             HHHHHCSCC-GG---GHHHHHHHHHHT------TCCCCCCTTCCHHHHH--HHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HhhccCCcc-cc---cCHHHHHHHHhc------cCCCCCCCCCCHHHHH--HHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            000000000 00   011112222211      1111122344455555  88888899999999 88888887653

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.96  E-value=5.2e-30  Score=231.83  Aligned_cols=235  Identities=14%  Similarity=0.111  Sum_probs=166.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||++.+. ++..||||+++.....   .+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        34 ~G~~g~V~~~~~~-~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~  101 (283)
T 3gen_A           34 TGQFGVVKYGKWR-GQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLSHEKL--------VQLYGVCTKQRPIFIITEYM  101 (283)
T ss_dssp             ---CEEEEEEEET-TTEEEEEEEECTTSBC---HHHHHHHHHHHHTCCCTTB--------CCEEEEECSSSSEEEEECCC
T ss_pred             CCCCceEEEEEEc-CCCeEEEEEecCCCCC---HHHHHHHHHHHhcCCCCCE--------eeEEEEEecCCCeEEEEecc
Confidence            5677899999877 5778999999876543   2457789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.+||+
T Consensus       102 ~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------i~H~dikp~Nili~~~~~~kl~  162 (283)
T 3gen_A          102 ANGCLLNYLREMRHRF---QTQQLLEMCKDVCEAMEYLESKQ----------------FLHRDLAARNCLVNDQGVVKVS  162 (283)
T ss_dssp             TTCBHHHHHHCGGGCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSSCSGGGEEECTTSCEEEC
T ss_pred             CCCcHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccCCCCccceEEEcCCCCEEEc
Confidence            887 544433322233   45556777889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC---CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         171 DLGLACDFSKKK---PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       171 DFGla~~~~~~~---~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |||+++......   .....+++.|++||+.. ..++ .+|+|+   ++|+++..+..||...+.....           
T Consensus       163 Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~-----------  231 (283)
T 3gen_A          163 DFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETA-----------  231 (283)
T ss_dssp             STTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH-----------
T ss_pred             cccccccccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHH-----------
Confidence            999998665433   22334567899999853 3344 555566   6666666577777543311000           


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                ..+.... .     .    ......++.+..  +..++...+|..|+ +.++++++...
T Consensus       232 ----------~~~~~~~-~-----~----~~~~~~~~~l~~--li~~~l~~~p~~Rps~~~ll~~L~~~  278 (283)
T 3gen_A          232 ----------EHIAQGL-R-----L----YRPHLASEKVYT--IMYSCWHEKADERPTFKILLSNILDV  278 (283)
T ss_dssp             ----------HHHHTTC-C-----C----CCCTTCCHHHHH--HHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ----------HHHhccc-C-----C----CCCCcCCHHHHH--HHHHHccCChhHCcCHHHHHHHHHHH
Confidence                      0111100 0     0    001122233334  78888889999999 88888888764

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.96  E-value=4.6e-30  Score=237.21  Aligned_cols=182  Identities=13%  Similarity=0.091  Sum_probs=138.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC----eEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN----SHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~----~~~iv   87 (334)
                      +++...||+|.+.  |+.||||++.....   ......+|+.+++.++||||        +++++++.+..    .+|+|
T Consensus        34 ~G~~g~Vy~~~~~--~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~~~~~lv  100 (322)
T 3soc_A           34 RGRFGCVWKAQLL--NEYVAVKIFPIQDK---QSWQNEYEVYSLPGMKHENI--------LQFIGAEKRGTSVDVDLWLI  100 (322)
T ss_dssp             CSTTCEEEEEEET--TEEEEEEEECGGGH---HHHHHHHHHHTSTTCCCTTB--------CCEEEEEEEECSSSEEEEEE
T ss_pred             ccCceEEEEEEEC--CCEEEEEEeecCch---HHHHHHHHHHHHhcCCCCCc--------hhhcceeccCCCCCceEEEE
Confidence            5788899999875  78999999975332   23345568999999999999        99999998643    47999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC----------CCCCchhhhhhcCCCCcEEeeCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA----------LNKNPLIAIFLTLSVPCLHFRDLKP  156 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~----------~~~~~~~~~~~~~~~~~iiHrDlKp  156 (334)
                      |||++|+ +..+....  .+   ....++.++.|++.||.|||+.          +                |+||||||
T Consensus       101 ~e~~~~g~L~~~l~~~--~~---~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~----------------ivH~Dlkp  159 (322)
T 3soc_A          101 TAFHEKGSLSDFLKAN--VV---SWNELCHIAETMARGLAYLHEDIPGLKDGHKPA----------------ISHRDIKS  159 (322)
T ss_dssp             EECCTTCBHHHHHHHC--CB---CHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE----------------EECSCCSG
T ss_pred             EecCCCCCHHHHHHhc--CC---CHHHHHHHHHHHHHHHHHHHhhccccccccCCC----------------EEeCCCCh
Confidence            9999987 54443322  22   4555677888999999999998          8                99999999


Q ss_pred             CceeeCCCCCEEEEecccccccCCCC----CCccccCccccccccccc------c-CCcceeeh--hHHHHHcCCCCCCC
Q psy6542         157 ANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKKL------G-GPFVSAWQ--TRYAKLFPNRLELH  223 (334)
Q Consensus       157 ~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~------~-~~~~~~w~--~~~~~l~~~~~~~~  223 (334)
                      +|||++.++.+||+|||+++......    .....||+.|++||+...      . +..+|+|+  ++.+.+.++..||.
T Consensus       160 ~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~  239 (322)
T 3soc_A          160 KNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAAD  239 (322)
T ss_dssp             GGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSS
T ss_pred             HhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999998665433    233568999999998542      2 23457777  44444455666776


Q ss_pred             CCCC
Q psy6542         224 PESG  227 (334)
Q Consensus       224 ~~~~  227 (334)
                      +...
T Consensus       240 ~~~~  243 (322)
T 3soc_A          240 GPVD  243 (322)
T ss_dssp             SCCC
T ss_pred             CCcc
Confidence            6554

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.96  E-value=3.1e-30  Score=242.95  Aligned_cols=189  Identities=11%  Similarity=-0.037  Sum_probs=129.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhc--CCCCcccccccceeeEE-------EEeecC
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHL--RNEPFKKCVLLFKMNLY-------KVTSEP   81 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l--~h~~i~~~~~~~~v~~~-------~~~~~~   81 (334)
                      +++.+.||+|.++.+|+.||||+++.... .....+.+.+|+.+++.|  +||||        ++++       +++...
T Consensus        72 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~i--------v~~~~~~~~p~d~~~~~  143 (371)
T 3q60_A           72 VGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEE--------ARDRRRLLLPSDAVAVQ  143 (371)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC------------------CBCCCCEEEEET
T ss_pred             CCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhh--------hhhceeEEeeehheecC
Confidence            47788999999999999999999998765 444555777886655555  69998        5544       444432


Q ss_pred             -----------------CeEEEEEEccCCChhHHhhhhhhhhhHHHH--HHH-HHHHHHHHHHHHHhhcCCCCCchhhhh
Q psy6542          82 -----------------NSHYIIGVRQSGPKDQISRSKINRYHKKLR--KCF-IRRTVQLLEPVHTCHSALNKNPLIAIF  141 (334)
Q Consensus        82 -----------------~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~--~~~-~~i~~qi~~~L~yLH~~~~~~~~~~~~  141 (334)
                                       ..+|+||||++|++..+.............  ..+ +.++.||+.||.|||+++         
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~---------  214 (371)
T 3q60_A          144 SQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKG---------  214 (371)
T ss_dssp             TSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---------
T ss_pred             CCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCC---------
Confidence                             348999999997754443432222211111  011 344579999999999999         


Q ss_pred             hcCCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCCCccccCccccccccccc---cCC-cceeeh---hHHHH
Q psy6542         142 LTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKL---GGP-FVSAWQ---TRYAK  214 (334)
Q Consensus       142 ~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~---~~~-~~~~w~---~~~~~  214 (334)
                             |+||||||+|||++.++.+||+|||+|+....... ...+|+.|++||+...   .++ .+|+|+   ++|++
T Consensus       215 -------ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~-~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~el  286 (371)
T 3q60_A          215 -------LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGP-ASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRV  286 (371)
T ss_dssp             -------EEETTCSGGGEEECTTSCEEECCGGGEEETTCEEE-GGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHH
T ss_pred             -------CccCcCCHHHEEECCCCCEEEEecceeeecCCCcc-CccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHH
Confidence                   99999999999999999999999999997754432 3456699999998542   344 566666   66666


Q ss_pred             HcCCCCCCCCCC
Q psy6542         215 LFPNRLELHPES  226 (334)
Q Consensus       215 l~~~~~~~~~~~  226 (334)
                      ++ +..||.+..
T Consensus       287 lt-g~~Pf~~~~  297 (371)
T 3q60_A          287 WC-LFLPFGLVT  297 (371)
T ss_dssp             HH-SSCSTTBCC
T ss_pred             Hh-CCCCCCCcC
Confidence            55 667876654

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.96  E-value=3.2e-29  Score=228.99  Aligned_cols=255  Identities=15%  Similarity=0.091  Sum_probs=173.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+..+|+.||||++....... ..+.+.+|+.+++.++||||        +++++++.+++.+|+||||+
T Consensus        32 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~  102 (303)
T 3a7i_A           32 KGSFGEVFKGIDNRTQKVVAIKIIDLEEAED-EIEDIQQEITVLSQCDSPYV--------TKYYGSYLKDTKLWIIMEYL  102 (303)
T ss_dssp             ECSSSEEEEEEETTTCCEEEEEEEETTTCST-THHHHHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             ccCCeEEEEEEECCCCcEEEEEEecccccHH-HHHHHHHHHHHHHhCCCCCE--------eEEEEEEecCCeEEEEEEeC
Confidence            5778899999999999999999998765432 34568889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+...  ..+   ....++.++.|++.||.|||+++                ++||||||+||+++.++.+||+
T Consensus       103 ~~~~L~~~~~~--~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dl~p~Nil~~~~~~~kl~  161 (303)
T 3a7i_A          103 GGGSALDLLEP--GPL---DETQIATILREILKGLDYLHSEK----------------KIHRDIKAANVLLSEHGEVKLA  161 (303)
T ss_dssp             TTEEHHHHHTT--SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTSCEEEC
T ss_pred             CCCcHHHHHhc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CccCCCChheEEECCCCCEEEe
Confidence            987 4443332  122   45556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      |||++.......  .....|++.|++||+...  ....+|+|+   ++|+++. +..||...........+........+
T Consensus       162 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~  240 (303)
T 3a7i_A          162 DFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAR-GEPPHSELHPMKVLFLIPKNNPPTLE  240 (303)
T ss_dssp             CCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSCCCCCC
T ss_pred             ecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHcc-CCCCCCCcCHHHHHHHhhcCCCCCCc
Confidence            999998765543  234568899999998532  244666666   5566554 55566543311111111111111111


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccchhHHHHHHHHHH
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMARK  310 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~lL~~l~~~  310 (334)
                      .... ..-...+..++..+|..|++..            ++.-..|............++++.+.+.
T Consensus       241 ~~~~-~~l~~li~~~l~~dp~~Rps~~------------~ll~~~~~~~~~~~~~~~~~~~~~~~~~  294 (303)
T 3a7i_A          241 GNYS-KPLKEFVEACLNKEPSFRPTAK------------ELLKHKFILRNAKKTSYLTELIDRYKRW  294 (303)
T ss_dssp             SSCC-HHHHHHHHHHCCSSGGGSCCHH------------HHTTCHHHHHHCCCGGGGHHHHHHHHHH
T ss_pred             cccC-HHHHHHHHHHcCCChhhCcCHH------------HHhhChhhhcCCCccHHHHHHHHHHHHh
Confidence            1111 1223445555566777766533            3333345544444444455666555543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.96  E-value=7.2e-30  Score=238.29  Aligned_cols=222  Identities=17%  Similarity=0.180  Sum_probs=158.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||++.+...      ...+|++++.++ +||||        +++++++.+++.+|+||||
T Consensus        32 ~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~E~~~l~~~~~hp~i--------v~~~~~~~~~~~~~lv~E~   97 (342)
T 2qr7_A           32 VGSYSVCKRCIHKATNMEFAVKIIDKSKR------DPTEEIEILLRYGQHPNI--------ITLKDVYDDGKYVYVVTEL   97 (342)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEETTTC------CCHHHHHHHHHHTTSTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEcccC------ChHHHHHHHHHhcCCCCc--------CeEEEEEEcCCEEEEEEeC
Confidence            47788999999999999999999986543      234588888887 79999        9999999999999999999


Q ss_pred             cCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC----
Q psy6542          91 QSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH----  164 (334)
Q Consensus        91 ~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~----  164 (334)
                      |+|+  .+.+...  ..+   ....+..++.||+.||.|||+++                |+||||||+|||+.++    
T Consensus        98 ~~gg~L~~~i~~~--~~~---~~~~~~~~~~qi~~al~~lH~~g----------------ivHrDlkp~NIl~~~~~~~~  156 (342)
T 2qr7_A           98 MKGGELLDKILRQ--KFF---SEREASAVLFTITKTVEYLHAQG----------------VVHRDLKPSNILYVDESGNP  156 (342)
T ss_dssp             CCSCBHHHHHHTC--TTC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEESSSSCSG
T ss_pred             CCCCcHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cEeccCCHHHEEEecCCCCc
Confidence            9987  3444322  233   44556677789999999999999                9999999999998543    


Q ss_pred             CCEEEEecccccccCCCC--CCccccCcccccccccc-ccCCc-ceeeh---hHHHHHcCCCCCCCCCCCCCcccch---
Q psy6542         165 GHVRISDLGLACDFSKKK--PHASVESDCILHGYIKK-LGGPF-VSAWQ---TRYAKLFPNRLELHPESGQSKPELI---  234 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~~~-~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i---  234 (334)
                      +.+||+|||+++......  ....+||+.|++||+.. ..++. +|+|+   ++|+++. +..||.+.......+++   
T Consensus       157 ~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~Pf~~~~~~~~~~~~~~i  235 (342)
T 2qr7_A          157 ESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLT-GYTPFANGPDDTPEEILARI  235 (342)
T ss_dssp             GGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCSSCSSTTSCHHHHHHHH
T ss_pred             CeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhc-CCCCCCCCCcCCHHHHHHHH
Confidence            359999999998765443  34567899999999853 33444 45555   5566655 56677654332222221   


Q ss_pred             hccccccccccc---ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         235 FMDQIEEVSQDL---ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       235 ~~~~~~~~~~~~---~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ..... ..+...   .+....+.+..++..||..|++..
T Consensus       236 ~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~  273 (342)
T 2qr7_A          236 GSGKF-SLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAA  273 (342)
T ss_dssp             HHCCC-CCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             ccCCc-ccCccccccCCHHHHHHHHHHCCCChhHCcCHH
Confidence            11111 111111   112345667777788999998865

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.96  E-value=1.9e-30  Score=242.53  Aligned_cols=183  Identities=19%  Similarity=0.166  Sum_probs=142.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCe------EE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNS------HY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~------~~   85 (334)
                      +++.+.||+|.++.+|+.||||++..........+.+.+|+.+++.++||||        +++++++...+.      +|
T Consensus        34 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~~~  105 (353)
T 3coi_A           34 SGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENV--------IGLLDVFTPASSLRNFYDFY  105 (353)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTB--------CCCSEEECSCSSGGGCCCCE
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCc--------ccHhheEecccccccceeEE
Confidence            5778899999999999999999998766655566788899999999999999        999999987654      59


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +||||++|++..+...   .+   ....+..++.||+.||.|||+++                |+||||||+||+++.++
T Consensus       106 lv~e~~~~~l~~~~~~---~~---~~~~~~~i~~qi~~al~~LH~~~----------------ivH~dlkp~NIl~~~~~  163 (353)
T 3coi_A          106 LVMPFMQTDLQKIMGL---KF---SEEKIQYLVYQMLKGLKYIHSAG----------------VVHRDLKPGNLAVNEDC  163 (353)
T ss_dssp             EEEECCSEEGGGTTTS---CC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSSCCGGGEEECTTC
T ss_pred             EEeccccCCHHHHhcC---CC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEeECCCC
Confidence            9999999875433222   22   44556677889999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccccc--c-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKKL--G-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~--~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++..... .....+|+.|++||+...  . ...+|+|+   ++|+++. +..||.+.+
T Consensus       164 ~~kl~Dfg~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~~  228 (353)
T 3coi_A          164 ELKILDFGLARHADAE-MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLT-GKTLFKGKD  228 (353)
T ss_dssp             CEEECSTTCTTC---------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHH-SSCSSBSSC
T ss_pred             cEEEeecccccCCCCC-ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHh-CCCCCCCCC
Confidence            9999999999866543 334567899999998432  3 44566666   5556555 566776654

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.96  E-value=6.7e-30  Score=240.02  Aligned_cols=183  Identities=15%  Similarity=0.096  Sum_probs=136.3

Q ss_pred             CCCceEEEec-----eeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC---CCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPP-----SLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR---NEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a-----~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~---h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      +|+.+.||+|     .+..+++.||||+++...     ...+..|+++++.++   |+||        +++++++..++.
T Consensus        75 ~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-----~~~~~~e~~~~~~l~~~~~~~i--------v~~~~~~~~~~~  141 (365)
T 3e7e_A           75 EGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN-----PWEFYIGTQLMERLKPSMQHMF--------MKFYSAHLFQNG  141 (365)
T ss_dssp             ECSSEEEEEEEC-------CCCCEEEEEESSCC-----HHHHHHHHHHHHHSCGGGGGGB--------CCEEEEEECSSC
T ss_pred             ccCCEEEEEEEecCCcccccCcEEEEEEeCCCC-----hhHHHHHHHHHHHhhhhhhhhh--------hhhheeeecCCC
Confidence            4778899999     578899999999998543     234566888888887   8999        999999999999


Q ss_pred             EEEEEEccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          84 HYIIGVRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        84 ~~ivmEy~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      .|+||||++|+ + +.+...............++.++.||+.||.|||+++                |+||||||+|||+
T Consensus       142 ~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~----------------ivHrDiKp~NIll  205 (365)
T 3e7e_A          142 SVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE----------------IIHGDIKPDNFIL  205 (365)
T ss_dssp             EEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTT----------------EECCCCSGGGEEE
T ss_pred             cEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCC----------------eecCCCCHHHEEe
Confidence            99999999987 4 3443322111122355667788889999999999999                9999999999999


Q ss_pred             CC-----------CCCEEEEecccccccCC---C-CCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCC
Q psy6542         162 DE-----------HGHVRISDLGLACDFSK---K-KPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       162 ~~-----------~~~vkl~DFGla~~~~~---~-~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~  221 (334)
                      +.           ++.+||+|||+|+.+..   . .....+||+.|++||+.. .. +..+|+|+   ++|+++++. .|
T Consensus       206 ~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~-~p  284 (365)
T 3e7e_A          206 GNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGT-YM  284 (365)
T ss_dssp             CGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSS-CC
T ss_pred             cccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCC-Cc
Confidence            98           89999999999975432   1 234457899999999853 33 44556666   666666654 45


Q ss_pred             CCC
Q psy6542         222 LHP  224 (334)
Q Consensus       222 ~~~  224 (334)
                      |..
T Consensus       285 f~~  287 (365)
T 3e7e_A          285 KVK  287 (365)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            543

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.96  E-value=1.1e-29  Score=231.27  Aligned_cols=253  Identities=13%  Similarity=0.043  Sum_probs=164.7

Q ss_pred             CCCceEEEece----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--CCeEE
Q psy6542          12 RVSKWRVKPPS----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--PNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--~~~~~   85 (334)
                      +++...||+|.    +..+|+.||||++....  ....+.+.+|+++++.++||||        +++++++..  ...+|
T Consensus        20 ~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~   89 (295)
T 3ugc_A           20 KGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST--EEHLRDFEREIEILKSLQHDNI--------VKYKGVCYSAGRRNLK   89 (295)
T ss_dssp             ECSSEEEEEEEECTTCSSCCEEEEEEEESCCC--HHHHHHHHHHHHHHHTCCCTTB--------CCEEEEECHHHHTSCE
T ss_pred             ccCCEEEEEEEEecccCCCCcEEEEEEcccCC--HHHHHHHHHHHHHHHhCCCCCE--------eeEEEEEecCCCCceE
Confidence            57788999998    67899999999998543  3344578889999999999999        999999864  45689


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+|||++.+
T Consensus        90 lv~e~~~~~~L~~~l~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~Dikp~Nil~~~~  150 (295)
T 3ugc_A           90 LIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQICKGMEYLGTKR----------------YIHRDLATRNILVENE  150 (295)
T ss_dssp             EEEECCTTCBHHHHHHHCGGGC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEEEET
T ss_pred             EEEEeCCCCCHHHHHHhccccc---CHHHHHHHHHHHHHHHHHHhcCC----------------cccCCCCHhhEEEcCC
Confidence            999999887 544433322223   45556777889999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCC-----CccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         165 GHVRISDLGLACDFSKKKP-----HASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      +.+||+|||+++.......     ....++..|++||+.. ..+ ..+|+|+   ++|+++.+.. |+....    .+. 
T Consensus       151 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~-~~~~~~----~~~-  224 (295)
T 3ugc_A          151 NRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE-KSKSPP----AEF-  224 (295)
T ss_dssp             TEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTC-TTCSHH----HHH-
T ss_pred             CeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhccc-ccCCCh----HHH-
Confidence            9999999999987654431     2234567799999843 334 4566666   6677766443 432211    000 


Q ss_pred             hcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         235 FMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                       ......   ..........+...+..      ....+.....++.+.+  +...|...+|..|+ +.++++.+.+..
T Consensus       225 -~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~el~~~L~~l~  290 (295)
T 3ugc_A          225 -MRMIGN---DKQGQMIVFHLIELLKN------NGRLPRPDGCPDEIYM--IMTECWNNNVNQRPSFRDLALRVDQIR  290 (295)
T ss_dssp             -HHHHCT---TCCTHHHHHHHHHHHHT------TCCCCCCTTCCHHHHH--HHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -HhhhcC---ccccchhHHHHHHHHhc------cCcCCCCcCcCHHHHH--HHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence             000000   00000001111111111      1111122344555555  77788888899999 888888776643

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.96  E-value=1.6e-29  Score=242.26  Aligned_cols=184  Identities=15%  Similarity=0.085  Sum_probs=138.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec------CCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE------PNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~------~~~~~   85 (334)
                      +++.+.||+|.++.+|+.||||.+.....      ...+|+++++.++||||        |++++++..      ...++
T Consensus        64 ~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~------~~~~E~~il~~l~hpni--------v~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           64 NGSFGVVYQAKLCDSGELVAIKKVLQDKR------FKNRELQIMRKLDHCNI--------VRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEECCTT------SCCHHHHHHHTCCCTTB--------CCEEEEEEEEETTTTEEEEE
T ss_pred             eCCCEEEEEEEECCCCcEEEEEEecccch------hHHHHHHHHHHcCCCCc--------cceeeEEeccCCCCcceeEE
Confidence            46788999999999999999999975432      23369999999999999        999988853      22478


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-  164 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-  164 (334)
                      +||||+++++..+...............+..++.||+.||.|||+++                |+||||||+|||++.+ 
T Consensus       130 lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDlkp~NILl~~~~  193 (420)
T 1j1b_A          130 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG----------------ICHRDIKPQNLLLDPDT  193 (420)
T ss_dssp             EEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT----------------EECSCCSGGGEEEETTT
T ss_pred             eehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCChhhEEEeCCC
Confidence            99999999854433322111222345556677889999999999999                9999999999999965 


Q ss_pred             CCEEEEecccccccCCCC-CCccccCcccccccccc--ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK--LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~--~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.+||+|||+|+...... .....||+.|++||+..  ..++ .+|+|+   ++|+++. +.+||.+.+
T Consensus       194 ~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~-G~~pf~~~~  261 (420)
T 1j1b_A          194 AVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLL-GQPIFPGDS  261 (420)
T ss_dssp             TEEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             CeEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHh-CCCCCCCCC
Confidence            568999999999765443 34567899999999853  2344 555566   5556655 667887765

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.96  E-value=3.7e-30  Score=241.80  Aligned_cols=185  Identities=18%  Similarity=0.166  Sum_probs=144.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC-----CeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP-----NSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~-----~~~~i   86 (334)
                      +++.+.||+|.+..+|+.||||++..... ....+.+.+|+++++.++||||        +++++++...     ..+|+
T Consensus        37 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~~~~~~i  107 (364)
T 3qyz_A           37 EGAYGMVCSAYDNLNKVRVAIKKISPFEH-QTYCQRTLREIKILLRFRHENI--------IGINDIIRAPTIEQMKDVYI  107 (364)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECCTTC-HHHHHHHHHHHHHHHHCCCTTB--------CCCCEEECCSSTTTCCCEEE
T ss_pred             cCCCeEEEEEEECCCCeEEEEEEeccccC-cHHHHHHHHHHHHHHhcCCCCC--------ccceeEEecCCccccceEEE
Confidence            46778999999999999999999986443 3344678889999999999999        9999998754     46899


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||++|++..+....  .+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.
T Consensus       108 v~e~~~~~L~~~l~~~--~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~Dikp~NIl~~~~~~  166 (364)
T 3qyz_A          108 VQDLMETDLYKLLKTQ--HL---SNDHICYFLYQILRGLKYIHSAN----------------VLHRDLKPSNLLLNTTCD  166 (364)
T ss_dssp             EEECCSEEHHHHHHHC--CC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTCC
T ss_pred             EEcccCcCHHHHHHhC--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCChHhEEECCCCC
Confidence            9999998854443322  23   44556677889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC-----CCccccCccccccccc--ccc-CCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK-----PHASVESDCILHGYIK--KLG-GPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       167 vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~--~~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      +||+|||+++......     .....||+.|++||+.  ... +..+|+|+   ++|+++. +.+||.+.+.
T Consensus       167 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~  237 (364)
T 3qyz_A          167 LKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS-NRPIFPGKHY  237 (364)
T ss_dssp             EEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHH-SSCSSCCSSG
T ss_pred             EEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHH-CCCCCCCCCh
Confidence            9999999998765433     2345789999999973  233 44556666   5566655 5678866653

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=8.2e-30  Score=236.69  Aligned_cols=238  Identities=13%  Similarity=0.041  Sum_probs=161.4

Q ss_pred             CCCceEEEeceeCCCC----CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLG----FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~----~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++.+.||+|.++.++    ..||||.++.... ......+.+|+++++.++||||        +++++++.+.+.+|+|
T Consensus        54 ~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv  124 (333)
T 1mqb_A           54 AGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT-EKQRVDFLGEAGIMGQFSHHNI--------IRLEGVISKYKPMMII  124 (333)
T ss_dssp             ECSSSEEEEEEEEC---CCEEEEEEEEECTTCC-HHHHHHHHHHHHHHHTCCCTTB--------CCEEEEECSSSSEEEE
T ss_pred             cCCCeEEEEEEEecCCCCccccEEEEEcCCCCC-HHHHHHHHHHHHHHHhCCCCCC--------CcEEEEEecCCCcEEE
Confidence            5778899999987654    3599999986543 3344568889999999999999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||++|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.
T Consensus       125 ~e~~~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~Dikp~NIl~~~~~~  185 (333)
T 1mqb_A          125 TEYMENGALDKFLREKDGEF---SVLQLVGMLRGIAAGMKYLANMN----------------YVHRDLAARNILVNSNLV  185 (333)
T ss_dssp             EECCTTEEHHHHHHHTTTCS---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTCC
T ss_pred             EeCCCCCcHHHHHHhCCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeCCCCChheEEECCCCc
Confidence            9999997 544433322233   45556778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC-----CccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         167 VRISDLGLACDFSKKKP-----HASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                      +||+|||+++.......     ....++..|++||+.. ..+ ..+|+|+   ++|+++..+..||...+..   +    
T Consensus       186 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~---~----  258 (333)
T 1mqb_A          186 CKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH---E----  258 (333)
T ss_dssp             EEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---H----
T ss_pred             EEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH---H----
Confidence            99999999987654321     1223467899999853 333 4566666   6677776577777443210   0    


Q ss_pred             ccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         237 DQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                        +...+...      ...+.....++.+..  +...|...+|..|+ +.++++.+.+.
T Consensus       259 ------------------~~~~~~~~------~~~~~~~~~~~~l~~--li~~~l~~~p~~Rps~~~l~~~L~~~  307 (333)
T 1mqb_A          259 ------------------VMKAINDG------FRLPTPMDCPSAIYQ--LMMQCWQQERARRPKFADIVSILDKL  307 (333)
T ss_dssp             ------------------HHHHHHTT------CCCCCCTTCBHHHHH--HHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             ------------------HHHHHHCC------CcCCCcccCCHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHH
Confidence                              00111000      000111233344444  77778888888888 77777766554

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.96  E-value=1.6e-29  Score=237.85  Aligned_cols=185  Identities=19%  Similarity=0.188  Sum_probs=145.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc------chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH------ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~------~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      +++.+.||+|.++.+|+.||||+++....      .....+.+.+|+.+++.+ +||||        +++++++...+..
T Consensus       104 ~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~i--------v~~~~~~~~~~~~  175 (365)
T 2y7j_A          104 RGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHI--------ITLIDSYESSSFM  175 (365)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTB--------CCEEEEEEBSSEE
T ss_pred             cCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCE--------eEEEEEEeeCCEE
Confidence            46788999999999999999999987652      123355778899999999 79999        9999999999999


Q ss_pred             EEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          85 YIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      |+||||++|+ +..+.... ..+   ....+..++.|++.||.|||+.+                |+||||||+||+++.
T Consensus       176 ~lv~e~~~g~~L~~~l~~~-~~l---~~~~~~~i~~qi~~~L~~LH~~g----------------i~H~Dlkp~NIl~~~  235 (365)
T 2y7j_A          176 FLVFDLMRKGELFDYLTEK-VAL---SEKETRSIMRSLLEAVSFLHANN----------------IVHRDLKPENILLDD  235 (365)
T ss_dssp             EEEECCCTTCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECT
T ss_pred             EEEEEeCCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEECC
Confidence            9999999997 43332321 123   44556677789999999999999                999999999999999


Q ss_pred             CCCEEEEecccccccCCCC-CCccccCcccccccccc--------ccCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         164 HGHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK--------LGGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~--------~~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ++.+||+|||++....... .....||+.|++||+..        ..+..+|+|+   ++|+++. +..||...
T Consensus       236 ~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~-g~~pf~~~  308 (365)
T 2y7j_A          236 NMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLA-GSPPFWHR  308 (365)
T ss_dssp             TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHH-SSCSSCCS
T ss_pred             CCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHH-CCCCCCCC
Confidence            9999999999998776543 34567899999999853        1234566666   5566655 55676543

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.96  E-value=1.6e-29  Score=227.94  Aligned_cols=184  Identities=20%  Similarity=0.202  Sum_probs=145.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.++.++..||+|.+.......  .+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        19 ~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~--~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   88 (277)
T 3f3z_A           19 RGSWGEVKIAVQKGTRIRRAAKKIPKYFVED--VDRFKQEIEIMKSLDHPNI--------IRLYETFEDNTDIYLVMELC   88 (277)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEGGGCSC--HHHHHHHHHHHHTCCCTTB--------CCEEEEEECSSEEEEEEECC
T ss_pred             ecCCEEEEEEEeCCCCcEEEEEeehhhccch--HHHHHHHHHHHHhCCCCCE--------eeEEEEEecCCeEEEEEecc
Confidence            4778899999999999999999998654332  3467789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee---CCCCCE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL---DEHGHV  167 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl---~~~~~v  167 (334)
                      +|+ +....... ..+   ....++.++.|++.||.|||+++                |+||||||+||++   +.++.+
T Consensus        89 ~~~~L~~~~~~~-~~~---~~~~~~~i~~~i~~~l~~lH~~~----------------i~H~dlkp~Nil~~~~~~~~~~  148 (277)
T 3f3z_A           89 TGGELFERVVHK-RVF---RESDAARIMKDVLSAVAYCHKLN----------------VAHRDLKPENFLFLTDSPDSPL  148 (277)
T ss_dssp             CSCBHHHHHHHH-CSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEESSSSTTCCE
T ss_pred             CCCcHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccCCCCCHHHEEEecCCCCCcE
Confidence            887 43222221 123   45556677889999999999999                9999999999999   788999


Q ss_pred             EEEecccccccCCCC-CCccccCccccccccccccC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         168 RISDLGLACDFSKKK-PHASVESDCILHGYIKKLGG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       168 kl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ||+|||++....... .....||+.|++||+....+ ..+|+|+   ++|+++. +..||.+..
T Consensus       149 ~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~  211 (277)
T 3f3z_A          149 KLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLC-GYPPFSAPT  211 (277)
T ss_dssp             EECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             EEEecccceeccCccchhccCCCCCccChHHhcccCCchhhehhHHHHHHHHHH-CCCCCCCCC
Confidence            999999998766544 34467899999999865444 4556666   5556555 566765543

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.96  E-value=2e-29  Score=232.55  Aligned_cols=186  Identities=18%  Similarity=0.160  Sum_probs=146.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcch----HHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHES----RVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~----~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++.+.||+|.++.+|+.||||+++......    ...+.+.+|+++++.++||||        +++++++.+.+.+|+|
T Consensus        22 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv   93 (321)
T 2a2a_A           22 SGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNV--------ITLHDVYENRTDVVLI   93 (321)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEE
T ss_pred             ecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCc--------ceEEEEEecCCEEEEE
Confidence            4678899999999999999999998765421    124568889999999999999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-  165 (334)
                      |||++|+ +..+.... ..+   ....++.++.|++.||.|||+++                |+||||||+||+++.++ 
T Consensus        94 ~e~~~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~aL~~lH~~~----------------ivH~dikp~NIl~~~~~~  153 (321)
T 2a2a_A           94 LELVSGGELFDFLAQK-ESL---SEEEATSFIKQILDGVNYLHTKK----------------IAHFDLKPENIMLLDKNI  153 (321)
T ss_dssp             ECCCCSCBHHHHHHTC-SCE---EHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEESCTTS
T ss_pred             EEcCCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCChHHEEEecCCC
Confidence            9999887 54433322 223   45556777889999999999999                99999999999999988 


Q ss_pred             ---CEEEEecccccccCCCCC-CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 ---HVRISDLGLACDFSKKKP-HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ---~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                         .+||+|||+++....... ....||+.|++||+.. .. ...+|+|+   ++|+++. +..||.+.+
T Consensus       154 ~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~  222 (321)
T 2a2a_A          154 PIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS-GASPFLGDT  222 (321)
T ss_dssp             SSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SCCSSCCSS
T ss_pred             CcCCEEEccCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHH-CCCCCCCCC
Confidence               799999999987765433 4456899999999853 23 44566666   5555555 566776554

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.96  E-value=7.7e-30  Score=236.66  Aligned_cols=242  Identities=13%  Similarity=0.055  Sum_probs=168.0

Q ss_pred             CCCceEEEeceeC-------CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPPSLK-------PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~-------~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      +++.+.||+|.+.       .+++.||||+++..... ...+.+.+|+++++.+ +||||        +++++++.+++.
T Consensus        45 ~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~~hp~i--------v~~~~~~~~~~~  115 (334)
T 2pvf_A           45 EGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNI--------INLLGACTQDGP  115 (334)
T ss_dssp             ECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCH-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSC
T ss_pred             ecCceeEEEeEeccccccccccceEEEEeeeccCCcH-HHHHHHHHHHHHHHHhhcCCCE--------eeEEEEEccCCc
Confidence            4677899999875       56788999999865432 3445688899999999 89999        999999999999


Q ss_pred             EEEEEEccCCC-hhHHhhhhhhh------------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE
Q psy6542          84 HYIIGVRQSGP-KDQISRSKINR------------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH  150 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~~~~~------------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii  150 (334)
                      +|+||||++|+ +..+.......            ........++.++.|++.||.|||+++                |+
T Consensus       116 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~----------------iv  179 (334)
T 2pvf_A          116 LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK----------------CI  179 (334)
T ss_dssp             CEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTT----------------EE
T ss_pred             eEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC----------------ee
Confidence            99999999987 54433322110            011245566778889999999999999                99


Q ss_pred             eeCCCCCceeeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCC
Q psy6542         151 FRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       151 HrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~  221 (334)
                      ||||||+||+++.++.+||+|||+++......    .....+++.|++||+.. .. ...+|+|+   ++|+++..+..|
T Consensus       180 H~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p  259 (334)
T 2pvf_A          180 HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP  259 (334)
T ss_dssp             CSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             CCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999998765543    22334578899999742 23 44566666   667777657777


Q ss_pred             CCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-h
Q psy6542         222 LHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-S  300 (334)
Q Consensus       222 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~  300 (334)
                      |.+.+....                     ...+....          ..+.....++.+..  +..+|...+|..|+ +
T Consensus       260 ~~~~~~~~~---------------------~~~~~~~~----------~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~  306 (334)
T 2pvf_A          260 YPGIPVEEL---------------------FKLLKEGH----------RMDKPANCTNELYM--MMRDCWHAVPSQRPTF  306 (334)
T ss_dssp             STTCCHHHH---------------------HHHHHHTC----------CCCCCTTCCHHHHH--HHHHHTCSSGGGSCCH
T ss_pred             cCcCCHHHH---------------------HHHHhcCC----------CCCCCccCCHHHHH--HHHHHccCChhhCcCH
Confidence            754331000                     00111000          00011223334444  77788888888888 7


Q ss_pred             HHHHHHHHHHh
Q psy6542         301 QELLGSMARKA  311 (334)
Q Consensus       301 ~~lL~~l~~~~  311 (334)
                      .++++.+.+..
T Consensus       307 ~ell~~L~~l~  317 (334)
T 2pvf_A          307 KQLVEDLDRIL  317 (334)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88877776653

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.96  E-value=4.6e-29  Score=241.14  Aligned_cols=233  Identities=15%  Similarity=0.120  Sum_probs=163.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC-eEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN-SHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~-~~~ivmEy   90 (334)
                      +++.+.||++...  |+.||||+++...    ..+.+.+|+++|++++||||        +++++++.+.+ .+|+||||
T Consensus       203 ~G~fg~V~~~~~~--~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~ni--------v~~~~~~~~~~~~~~iv~e~  268 (450)
T 1k9a_A          203 KGEFGDVMLGDYR--GNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNL--------VQLLGVIVEEKGGLYIVTEY  268 (450)
T ss_dssp             ECSSEEEEEEEET--TEEEEEEEESSCT----TSHHHHHHHHHHHTCCCTTB--------CCEEEEEECTTSCEEEEEEC
T ss_pred             CcCCeeEEEEEec--CCeEEEEEeCCch----HHHHHHHHHHHHHhccCCCE--------EEEEEEEEcCCCceEEEEEe
Confidence            4677899999875  6799999998654    34567889999999999999        99999987654 79999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|+ +..+......  .......++.++.|++.||.|||+++                |+||||||+|||++.++.+||
T Consensus       269 ~~~g~L~~~l~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~----------------ivHrDlkp~Nill~~~~~~kl  330 (450)
T 1k9a_A          269 MAKGSLVDYLRSRGR--SVLGGDCLLKFSLDVCEAMEYLEGNN----------------FVHRDLAARNVLVSEDNVAKV  330 (450)
T ss_dssp             CTTCBHHHHHHHHCT--TTCCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEECTTSCEEE
T ss_pred             cCCCcHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHHhCC----------------eeCCCCCHhhEEECCCCCEEE
Confidence            9987 4433332211  11244556778889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccccc
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQ  244 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  244 (334)
                      +|||+++...... ....++..|++||+.. ..+ ..+|+|+   ++|+++..+..||.+.+......            
T Consensus       331 ~DfG~a~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~------------  397 (450)
T 1k9a_A          331 SDFGLTKEASSTQ-DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVP------------  397 (450)
T ss_dssp             CCCTTCEECC-------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHH------------
T ss_pred             eeCCCcccccccc-cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH------------
Confidence            9999998654432 2335678899999853 334 4566666   77777776788875543211110            


Q ss_pred             ccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         245 DLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       245 ~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                               .+....      ++    +....+++.+.+  +...|...+|..|+ +.++++.|...
T Consensus       398 ---------~i~~~~------~~----~~p~~~~~~l~~--li~~cl~~dp~~Rpt~~~l~~~L~~i  443 (450)
T 1k9a_A          398 ---------RVEKGY------KM----DAPDGCPPAVYD--VMKNCWHLDAATRPTFLQLREQLEHI  443 (450)
T ss_dssp             ---------HHHTTC------CC----CCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ---------HHHcCC------CC----CCCCcCCHHHHH--HHHHHcCCChhHCcCHHHHHHHHHHH
Confidence                     010000      01    112344555566  66667777888888 77777766553

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.96  E-value=4e-30  Score=239.75  Aligned_cols=184  Identities=17%  Similarity=0.177  Sum_probs=142.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC-----CeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP-----NSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~-----~~~~i   86 (334)
                      +++.+.||+|.+..+|+.||||.+..... ......+.+|+++++.++||||        +++++++..+     +.+|+
T Consensus        21 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~~l   91 (353)
T 2b9h_A           21 EGAYGVVCSATHKPTGEIVAIKKIEPFDK-PLFALRTLREIKILKHFKHENI--------ITIFNIQRPDSFENFNEVYI   91 (353)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECCCSS-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEECCCSCSTTCCCEEE
T ss_pred             CCCCeEEEEEEECCCCcEEEEEeeccccc-chHHHHHHHHHHHHHhCcCCCc--------CCeeeeecccccCccceEEE
Confidence            57788999999999999999999975433 3345567789999999999999        9999987754     67999


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||++|++..+....  .+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.
T Consensus        92 v~e~~~~~L~~~~~~~--~~---~~~~~~~~~~qi~~~L~~LH~~~----------------ivH~Dlkp~Nil~~~~~~  150 (353)
T 2b9h_A           92 IQELMQTDLHRVISTQ--ML---SDDHIQYFIYQTLRAVKVLHGSN----------------VIHRDLKPSNLLINSNCD  150 (353)
T ss_dssp             EECCCSEEHHHHHHHC--CC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEECTTCC
T ss_pred             EEeccCccHHHHHhhc--CC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHeEEcCCCc
Confidence            9999998854443332  23   44556677889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC------------CCccccCcccccccccc--ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK------------PHASVESDCILHGYIKK--LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~------------~~~~~~t~~~~~~~v~~--~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +||+|||+++......            .....||+.|++||+..  ..++ .+|+|+   ++|+++ ++..||.+.+
T Consensus       151 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~-~g~~pf~~~~  227 (353)
T 2b9h_A          151 LKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELF-LRRPIFPGRD  227 (353)
T ss_dssp             EEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHH-HSSCSCCCSS
T ss_pred             EEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHH-hCCCCCCCCC
Confidence            9999999998765332            12246789999999742  3344 556666   555554 5666776654

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.96  E-value=1.1e-29  Score=235.28  Aligned_cols=187  Identities=19%  Similarity=0.143  Sum_probs=142.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.++.+|+.||||+++...........+.+|+.+++.+. ||||        +++++++.+++.+|+||||
T Consensus        39 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i--------v~~~~~~~~~~~~~lv~e~  110 (327)
T 3lm5_A           39 RGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRV--------INLHEVYENTSEIILILEY  110 (327)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             CCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCE--------EEEEEEEEeCCeEEEEEEe
Confidence            577889999999999999999999876554444557788999999995 5999        9999999999999999999


Q ss_pred             cCCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC---CC
Q psy6542          91 QSGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE---HG  165 (334)
Q Consensus        91 ~~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~---~~  165 (334)
                      +.|+ +..+... ....+   ....++.++.|++.||.|||+++                |+||||||+|||++.   ++
T Consensus       111 ~~~~~L~~~~~~~~~~~~---~~~~~~~i~~ql~~~L~~LH~~g----------------ivH~Dikp~NIl~~~~~~~~  171 (327)
T 3lm5_A          111 AAGGEIFSLCLPELAEMV---SENDVIRLIKQILEGVYYLHQNN----------------IVHLDLKPQNILLSSIYPLG  171 (327)
T ss_dssp             CTTEEGGGGGSSCC-CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEESCBTTBC
T ss_pred             cCCCcHHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCcCChHHEEEecCCCCC
Confidence            9998 4333222 11223   45556777889999999999999                999999999999998   78


Q ss_pred             CEEEEecccccccCCCCC-CccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKP-HASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+++....... ....||+.|++||+.. ..+ ..+|+|+   ++|+++. +..||.+.+
T Consensus       172 ~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~  237 (327)
T 3lm5_A          172 DIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLT-HTSPFVGED  237 (327)
T ss_dssp             CEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             cEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCC
Confidence            999999999997765543 3457899999999853 334 4555566   5555555 556775544

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.6e-29  Score=234.96  Aligned_cols=245  Identities=13%  Similarity=0.026  Sum_probs=168.0

Q ss_pred             CCCceEEEecee-----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSL-----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~-----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++.+.||+|.+     ..+++.||||+++.... ....+.+.+|+++++.+ +||||        +++++++..++.+|
T Consensus        55 ~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~hp~i--------v~~~~~~~~~~~~~  125 (344)
T 1rjb_A           55 SGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD-SSEREALMSELKMMTQLGSHENI--------VNLLGACTLSGPIY  125 (344)
T ss_dssp             ECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCE
T ss_pred             CCCCceeEEeeeeccccCCcceEEEEEecccccC-HHHHHHHHHHHHHHHhhcCCCCe--------eeEEEEEeeCCccE
Confidence            466789999997     35677899999985443 22345788899999999 89999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhhhh-------------------hHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRY-------------------HKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLS  145 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~-------------------~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~  145 (334)
                      +||||++|+ +..+.......+                   .......++.++.||+.||.|||+++             
T Consensus       126 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~-------------  192 (344)
T 1rjb_A          126 LIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS-------------  192 (344)
T ss_dssp             EEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT-------------
T ss_pred             EEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCC-------------
Confidence            999999887 444333321111                   11245566778889999999999999             


Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-ccCC-cceeeh---hHHHHHc
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLF  216 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~  216 (334)
                         |+||||||+||+++.++.+||+|||+++.......    ....+|+.|++||+.. ..++ .+|+|+   ++|+++.
T Consensus       193 ---ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t  269 (344)
T 1rjb_A          193 ---CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFS  269 (344)
T ss_dssp             ---EEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTT
T ss_pred             ---cccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHc
Confidence               99999999999999999999999999986654432    2334577899999742 3344 556666   6666655


Q ss_pred             CCCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccc
Q psy6542         217 PNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSA  296 (334)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  296 (334)
                      .+..||.+........                    ..+....          ..+.....++.+..  +...|...+|.
T Consensus       270 ~g~~p~~~~~~~~~~~--------------------~~~~~~~----------~~~~~~~~~~~l~~--li~~~l~~dp~  317 (344)
T 1rjb_A          270 LGVNPYPGIPVDANFY--------------------KLIQNGF----------KMDQPFYATEEIYI--IMQSCWAFDSR  317 (344)
T ss_dssp             TSCCSSTTCCCSHHHH--------------------HHHHTTC----------CCCCCTTCCHHHHH--HHHHHTCSSGG
T ss_pred             CCCCCcccCCcHHHHH--------------------HHHhcCC----------CCCCCCCCCHHHHH--HHHHHcCCCch
Confidence            5777876544211000                    0000000          00011223334444  77888888999


Q ss_pred             cch-hHHHHHHHHHHhCC
Q psy6542         297 HKC-SQELLGSMARKAGK  313 (334)
Q Consensus       297 ~r~-~~~lL~~l~~~~~~  313 (334)
                      .|+ +.++++.+......
T Consensus       318 ~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          318 KRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             GSCCHHHHHHHHHHHC--
T ss_pred             hCcCHHHHHHHHHHHHHH
Confidence            999 88888888775443

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.96  E-value=1.9e-30  Score=239.53  Aligned_cols=184  Identities=15%  Similarity=0.049  Sum_probs=140.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+. +|+.||||++....... ....+.+|+++++.++||||        +++++++.+++..++||||+
T Consensus        40 ~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~  109 (326)
T 3uim_A           40 RGGFGKVYKGRLA-DGTLVAVKRLKEERTQG-GELQFQTEVEMISMAVHRNL--------LRLRGFCMTPTERLLVYPYM  109 (326)
T ss_dssp             CCSSSEEEEECCS-SSCCEEEEECCC------CCCHHHHHHHGGGTCCCTTB--------CCCCEEECCSSCCEEEEECC
T ss_pred             cCCCcEEEEEEec-CCCEEEEEEeccccCch-HHHHHHHHHHHHHhccCCCc--------cceEEEEecCCceEEEEEec
Confidence            5778899999855 59999999998654422 22357889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC---CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA---LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~---~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      .|+ +..+................+.++.|++.||.|||++   +                |+||||||+|||++.++.+
T Consensus       110 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~----------------ivH~Dlkp~Nil~~~~~~~  173 (326)
T 3uim_A          110 ANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPK----------------IIHRDVKAANILLDEEFEA  173 (326)
T ss_dssp             TTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSC----------------EECCCCSGGGEEECTTCCE
T ss_pred             cCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC----------------eEeCCCchhhEEECCCCCE
Confidence            987 5444333222222235566677888999999999999   7                9999999999999999999


Q ss_pred             EEEecccccccCCCCC---CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCC
Q psy6542         168 RISDLGLACDFSKKKP---HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       168 kl~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                      ||+|||+++.......   ....||+.|++||+..  ..+..+|+|+   ++|+++. +..||
T Consensus       174 kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf  235 (326)
T 3uim_A          174 VVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELIT-GQRAF  235 (326)
T ss_dssp             EECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHH-CCCSB
T ss_pred             EeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHh-CCCcc
Confidence            9999999987654432   3345899999999842  2344666676   5566655 55565

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.96  E-value=2.8e-29  Score=230.56  Aligned_cols=241  Identities=11%  Similarity=0.070  Sum_probs=165.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+..+|+.||||++..... +....+.+.+|+++++.++||||        +++++++..++.+|+||||
T Consensus        44 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e~  115 (309)
T 2h34_A           44 RGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHV--------VPIHDFGEIDGQLYVDMRL  115 (309)
T ss_dssp             ECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTB--------CCEEEEEEETTEEEEEEEC
T ss_pred             CCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCe--------eEEEEEEeeCCeEEEEEEe
Confidence            46778999999999999999999986544 34455678899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ..+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.+||
T Consensus       116 ~~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------i~H~dlkp~NIl~~~~~~~kl  175 (309)
T 2h34_A          116 INGVDLAAMLRRQ-GPL---APPRAVAIVRQIGSALDAAHAAG----------------ATHRDVKPENILVSADDFAYL  175 (309)
T ss_dssp             CCCEEHHHHHHHH-CSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTSCEEE
T ss_pred             cCCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCc----------------CCcCCCChHHEEEcCCCCEEE
Confidence            9987 54443322 122   45556777889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC---CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKK---PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||++.......   .....|++.|++||+.. .. ...+|+|+   ++|+++. +..||.+.+..             
T Consensus       176 ~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~-------------  241 (309)
T 2h34_A          176 VDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLT-GSPPYQGDQLS-------------  241 (309)
T ss_dssp             CSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHH-SSCSSCSCHHH-------------
T ss_pred             ecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHH-CCCCCCCchHH-------------
Confidence            9999998665443   23456789999999853 22 44566666   5666655 56676443210             


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch--hHHHHHHHHHHhC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC--SQELLGSMARKAG  312 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~--~~~lL~~l~~~~~  312 (334)
                                  .+...+...    ...+....+.+++.+.+  +...+...+|..|+  +.++++.+.....
T Consensus       242 ------------~~~~~~~~~----~~~~~~~~~~~~~~l~~--li~~~l~~dP~~Rp~s~~~l~~~l~~~l~  296 (309)
T 2h34_A          242 ------------VMGAHINQA----IPRPSTVRPGIPVAFDA--VIARGMAKNPEDRYVTCGDLSAAAHAALA  296 (309)
T ss_dssp             ------------HHHHHHHSC----CCCGGGTSTTCCTHHHH--HHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred             ------------HHHHHhccC----CCCccccCCCCCHHHHH--HHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence                        000001000    00011122345555566  77777777888886  7888888876543

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=241.40  Aligned_cols=188  Identities=15%  Similarity=0.167  Sum_probs=144.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC--eEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN--SHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~--~~~ivmE   89 (334)
                      +++.+.||+|.++.+|+.||||+++...... ..+.+.+|+++++.++||||        +++++++...+  ..|+|||
T Consensus        19 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~E~~~l~~l~hpnI--------v~~~~~~~~~~~~~~~lv~e   89 (396)
T 4eut_A           19 QGATANVFRGRHKKTGDLFAIKVFNNISFLR-PVDVQMREFEVLKKLNHKNI--------VKLFAIEEETTTRHKVLIME   89 (396)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEECGGGGGS-CHHHHHHHHHHHHHCCCTTB--------CCEEEEEECTTTCCEEEEEC
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEeccccccc-hHHHHHHHHHHHHhcCCCCC--------CeEEEeeccCCCCeeEEEEe
Confidence            4788899999999999999999998544322 23456789999999999999        99999998654  7899999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee----CCC
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL----DEH  164 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl----~~~  164 (334)
                      |++|+ +..+....... .......++.++.|++.||.|||+++                |+||||||+|||+    +.+
T Consensus        90 ~~~~g~L~~~l~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~Dlkp~NIll~~~~~~~  152 (396)
T 4eut_A           90 FCPCGSLYTVLEEPSNA-YGLPESEFLIVLRDVVGGMNHLRENG----------------IVHRNIKPGNIMRVIGEDGQ  152 (396)
T ss_dssp             CCTTEEHHHHTTSGGGT-TCCCHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEEEECTTSC
T ss_pred             cCCCCCHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHHHHHCC----------------EEECCcCHHHEEEeecCCCc
Confidence            99987 54443332211 11355666778889999999999999                9999999999999    777


Q ss_pred             CCEEEEecccccccCCCCC-CccccCcccccccccc---------cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKKP-HASVESDCILHGYIKK---------LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~---------~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.+||+|||+++....... ....||+.|++||+..         .. +..+|+|+   ++|++++ +..||.+..
T Consensus       153 ~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~t-g~~Pf~~~~  227 (396)
T 4eut_A          153 SVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT-GSLPFRPFE  227 (396)
T ss_dssp             EEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHH-SSCSEECTT
T ss_pred             eeEEEecCCCceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHH-CCCCCCCCC
Confidence            8899999999987755543 3456899999999843         22 34566666   5566655 566775543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.96  E-value=7.2e-30  Score=244.63  Aligned_cols=184  Identities=18%  Similarity=0.172  Sum_probs=133.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc------chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH------ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~------~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++.+.||+|.++.+++.||||++.+...      .......+.+|++++++++||||        +++++++.. +.+|
T Consensus       145 ~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpni--------v~l~~~~~~-~~~~  215 (419)
T 3i6u_A          145 SGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI--------IKIKNFFDA-EDYY  215 (419)
T ss_dssp             ECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTB--------CCCCEEEES-SEEE
T ss_pred             eCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCE--------eeEEEEEec-CceE
Confidence            46788999999999999999999986532      22233467889999999999999        999999854 5589


Q ss_pred             EEEEccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          86 IIGVRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        86 ivmEy~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +||||+.|+ + +.+...  ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.
T Consensus       216 lv~e~~~~g~L~~~l~~~--~~~---~~~~~~~i~~qi~~~l~~LH~~~----------------ivHrDlkp~NIll~~  274 (419)
T 3i6u_A          216 IVLELMEGGELFDKVVGN--KRL---KEATCKLYFYQMLLAVQYLHENG----------------IIHRDLKPENVLLSS  274 (419)
T ss_dssp             EEEECCTTCBGGGGTSSS--CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEESS
T ss_pred             EEEEcCCCCcHHHHHhcc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCChHhEEEec
Confidence            999999988 4 333221  223   45556677789999999999999                999999999999976


Q ss_pred             CC---CEEEEecccccccCCCC-CCccccCcccccccccc----ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         164 HG---HVRISDLGLACDFSKKK-PHASVESDCILHGYIKK----LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       164 ~~---~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~----~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ++   .+||+|||+|+...... ....+||+.|++||+..    ..++ .+|+|+   ++|+++. +..||....
T Consensus       275 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~llt-g~~pf~~~~  348 (419)
T 3i6u_A          275 QEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLS-GYPPFSEHR  348 (419)
T ss_dssp             SSSSCCEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHH-SSCSSCCCS
T ss_pred             CCCcceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHH-CCCCCCCCc
Confidence            54   49999999999776544 34567899999999852    2343 556666   5555555 666776544

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.96  E-value=2.2e-29  Score=231.23  Aligned_cols=185  Identities=14%  Similarity=0.122  Sum_probs=139.6

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHh-cCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNH-LRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~-l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      .+++.+.||+|.+..+|+.||||++......  ....+.+|++++++ ++||||        +++++++.+++.+|+|||
T Consensus        22 g~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~h~~i--------~~~~~~~~~~~~~~lv~e   91 (316)
T 2ac3_A           22 GEGAHARVQTCINLITSQEYAVKIIEKQPGH--IRSRVFREVEMLYQCQGHRNV--------LELIEFFEEEDRFYLVFE   91 (316)
T ss_dssp             CCCSSEEEEEEECSSSCCEEEEEEEECCSSC--CHHHHHHHHHHHHHTCCCTTB--------CCEEEEEEETTEEEEEEE
T ss_pred             cCCceEEEEEEEEcCCCcEEEEEEEeeCcch--hHHHHHHHHHHHHHhcCCCCe--------eeEEEEEeeCCEEEEEEE
Confidence            4678899999999999999999999865432  34467789999988 579999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC--
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH--  166 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~--  166 (334)
                      |++|+ +..+.... ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.++.  
T Consensus        92 ~~~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------ivH~dlkp~Nil~~~~~~~~  151 (316)
T 2ac3_A           92 KMRGGSILSHIHKR-RHF---NELEASVVVQDVASALDFLHNKG----------------IAHRDLKPENILCEHPNQVS  151 (316)
T ss_dssp             CCTTCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEESCSSSSC
T ss_pred             cCCCCcHHHHHhcc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ceeCCCCHHHEEEccCCCcC
Confidence            99987 43332222 223   34455667789999999999999                999999999999998876  


Q ss_pred             -EEEEecccccccCCCC---------CCccccCccccccccccc-------cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 -VRISDLGLACDFSKKK---------PHASVESDCILHGYIKKL-------GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 -vkl~DFGla~~~~~~~---------~~~~~~t~~~~~~~v~~~-------~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                       +||+|||+++......         .....||+.|++||+...       ....+|+|+   ++|+++. +..||.+.+
T Consensus       152 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~-g~~pf~~~~  230 (316)
T 2ac3_A          152 PVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLS-GYPPFVGRC  230 (316)
T ss_dssp             SEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHH-SSCSCCCCC
T ss_pred             ceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHH-CCCCCcccc
Confidence             9999999998654221         123458999999998532       345667777   5555554 666776654

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.96  E-value=1.1e-29  Score=235.12  Aligned_cols=238  Identities=14%  Similarity=0.043  Sum_probs=158.2

Q ss_pred             CCCceEEEeceeCCCCCcE----EEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPI----QIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~v----AIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++.+.||+|.+..+|+.|    |+|.++.... ....+.+.+|+.+++.++||||        +++++++.+++ .++|
T Consensus        25 ~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~-~~~v   94 (327)
T 3poz_A           25 SGAFGTVYKGLWIPEGEKVKIPVAIKELREATS-PKANKEILDEAYVMASVDNPHV--------CRLLGICLTST-VQLI   94 (327)
T ss_dssp             EETTEEEEEEEECC----CCEEEEEEEC--------CHHHHHHHHHHHHHCCBTTB--------CCEEEEEESSS-EEEE
T ss_pred             eCCCeEEEEEEEcCCCceEEEEEEEeecccccC-HHHHHHHHHHHHHHHhCCCCCE--------eEEEEEEecCC-eEEE
Confidence            4778899999999888876    6666654332 2244578889999999999999        99999998765 7889


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.++ +..........+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.
T Consensus        95 ~e~~~~g~L~~~l~~~~~~~---~~~~~~~~~~qi~~~l~~LH~~~----------------ivH~Dikp~NIll~~~~~  155 (327)
T 3poz_A           95 TQLMPFGCLLDYVREHKDNI---GSQYLLNWCVQIAKGMNYLEDRR----------------LVHRDLAARNVLVKTPQH  155 (327)
T ss_dssp             EECCTTCBHHHHHHHSTTSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEEEETTE
T ss_pred             EEecCCCcHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHhhCC----------------eeCCCCChheEEECCCCC
Confidence            9999888 433323222223   44556778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC----CccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcc
Q psy6542         167 VRISDLGLACDFSKKKP----HASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMD  237 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~  237 (334)
                      +||+|||+|+.......    ....+|..|++||+. ...++ .+|+|+   ++|+++..+..||.+.+.......+...
T Consensus       156 ~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~  235 (327)
T 3poz_A          156 VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKG  235 (327)
T ss_dssp             EEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTT
T ss_pred             EEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcC
Confidence            99999999987654432    223457789999974 33344 555565   6677777577787654321111110000


Q ss_pred             cccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         238 QIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                      .                               ..+..+..+..+..  +...|...+|..|+ +.++++++.+..
T Consensus       236 ~-------------------------------~~~~~~~~~~~~~~--li~~~l~~~p~~Rps~~ell~~l~~~~  277 (327)
T 3poz_A          236 E-------------------------------RLPQPPICTIDVYM--IMVKCWMIDADSRPKFRELIIEFSKMA  277 (327)
T ss_dssp             C-------------------------------CCCCCTTBCHHHHH--HHHHHTCSCGGGSCCHHHHHHHHHHHH
T ss_pred             C-------------------------------CCCCCccCCHHHHH--HHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence            0                               00111222333334  67777788888888 788887776654

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.96  E-value=1.4e-29  Score=229.32  Aligned_cols=186  Identities=11%  Similarity=0.024  Sum_probs=145.8

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      .+++...||+|.++.+++.||||.+.....   ..+.+.+|+++++.++||||        +++++++.+++.+|+||||
T Consensus        22 g~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~~v~e~   90 (288)
T 3kfa_A           22 GGGQYGEVYEGVWKKYSLTVAVKTLKEDTM---EVEEFLKEAAVMKEIKHPNL--------VQLLGVCTREPPFYIITEF   90 (288)
T ss_dssp             GGGTTCSEEEEEEGGGTEEEEEEEECSCST---HHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSEEEEEEC
T ss_pred             CCCCceeEEEeEecCCCEEEEEEecCcCHH---HHHHHHHHHHHHHhCCCCCE--------eeEEEEEccCCCEEEEEEc
Confidence            357778999999999999999999986443   34567789999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++|+ +..+... ....+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.+|
T Consensus        91 ~~~~~L~~~~~~~~~~~~---~~~~~~~i~~~i~~~l~~lH~~~----------------i~H~dikp~Nil~~~~~~~~  151 (288)
T 3kfa_A           91 MTYGNLLDYLRECNRQEV---SAVVLLYMATQISSAMEYLEKKN----------------FIHRDLAARNCLVGENHLVK  151 (288)
T ss_dssp             CTTEEHHHHHHHCCTTTS---CHHHHHHHHHHHHHHHHHHHHHT----------------CCCSCCSGGGEEECGGGCEE
T ss_pred             CCCCcHHHHHHhcccCCc---cHhHHHHHHHHHHHHHHHHHHCC----------------ccCCCCCcceEEEcCCCCEE
Confidence            9987 4333332 22222   45556777889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC---CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP---HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+++.......   ....+++.|++||+.. ..++ .+|+|+   ++|+++..+..||.+..
T Consensus       152 l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~  217 (288)
T 3kfa_A          152 VADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID  217 (288)
T ss_dssp             ECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             EccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            999999987765442   2234567899999843 3344 556666   66777665777875543

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=2.6e-29  Score=227.92  Aligned_cols=237  Identities=13%  Similarity=0.039  Sum_probs=167.7

Q ss_pred             CCCceEEEeceeC--CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLK--PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~--~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|.+.  .+++.||||+++.... ....+.+.+|+++++.++||||        +++++++ ..+.+|+|||
T Consensus        20 ~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~-~~~~~~lv~e   89 (287)
T 1u59_A           20 CGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE-KADTEEMMREAQIMHQLDNPYI--------VRLIGVC-QAEALMLVME   89 (287)
T ss_dssp             CCTTEEEEEEEEC---CCEEEEEEEECSSCC-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEE-ESSSEEEEEE
T ss_pred             ccCceeEEEeEeccCCCcceEEEEecCCccc-hhHHHHHHHHHHHHHhCCCCCE--------eEEEEEe-cCCCcEEEEE
Confidence            5788899999854  5788899999987543 3345678889999999999999        9999999 4567899999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.+|
T Consensus        90 ~~~~~~L~~~l~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dlkp~Nili~~~~~~k  150 (287)
T 1u59_A           90 MAGGGPLHKFLVGKREEI---PVSNVAELLHQVSMGMKYLEEKN----------------FVHRDLAARNVLLVNRHYAK  150 (287)
T ss_dssp             CCTTEEHHHHHTTCTTTS---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEEEETTEEE
T ss_pred             eCCCCCHHHHHHhCCccC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeeCCCchheEEEcCCCCEE
Confidence            99997 544433322223   45556778889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC-----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         169 ISDLGLACDFSKKKP-----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       169 l~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      |+|||+++.......     ....+|+.|++||+.. .. ...+|+|+   ++|+++..+..||.........       
T Consensus       151 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~-------  223 (287)
T 1u59_A          151 ISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVM-------  223 (287)
T ss_dssp             ECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHH-------
T ss_pred             ECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHH-------
Confidence            999999987754432     2234578899999853 23 44566666   5666665577787544311000       


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                    ..+..   .       ...+..+..++.+..  +...+...+|..|+ +.++++++...
T Consensus       224 --------------~~i~~---~-------~~~~~~~~~~~~l~~--li~~~l~~~p~~Rps~~~l~~~l~~~  270 (287)
T 1u59_A          224 --------------AFIEQ---G-------KRMECPPECPPELYA--LMSDCWIYKWEDRPDFLTVEQRMRAC  270 (287)
T ss_dssp             --------------HHHHT---T-------CCCCCCTTCCHHHHH--HHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             --------------HHHhc---C-------CcCCCCCCcCHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHH
Confidence                          00000   0       000112334444555  77788888888888 77777776654

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.96  E-value=3.3e-29  Score=242.38  Aligned_cols=235  Identities=12%  Similarity=0.051  Sum_probs=167.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.... +..||||.++....   ..+.+.+|+++|+.++||||        +++++++. .+.+|+||||+
T Consensus       198 ~G~fg~V~~~~~~~-~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i--------v~l~~~~~-~~~~~lv~e~~  264 (454)
T 1qcf_A          198 AGQFGEVWMATYNK-HTKVAVKTMKPGSM---SVEAFLAEANVMKTLQHDKL--------VKLHAVVT-KEPIYIITEFM  264 (454)
T ss_dssp             CCSSEEEEEEEETT-TEEEEEEEECTTSB---CHHHHHHHHHHHTTCCCTTB--------CCEEEEEC-SSSCEEEECCC
T ss_pred             cCCceEEEEEEECC-ccEEEEEEecCCCc---cHHHHHHHHHHHhhCCCCCE--------eeEEEEEe-CCccEEEEeec
Confidence            46788999999865 77899999986543   24567889999999999999        99999986 66789999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .|| + +++........   ....++.++.||+.||.|||+++                |+||||||+|||++.++.+||
T Consensus       265 ~~g~L~~~l~~~~~~~~---~~~~~~~~~~qi~~~l~~LH~~~----------------ivHrDlkp~Nill~~~~~~kl  325 (454)
T 1qcf_A          265 AKGSLLDFLKSDEGSKQ---PLPKLIDFSAQIAEGMAFIEQRN----------------YIHRDLRAANILVSASLVCKI  325 (454)
T ss_dssp             TTCBHHHHHHSHHHHTC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSSCSGGGEEECTTCCEEE
T ss_pred             CCCcHHHHHHhccCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccCCCCCHHHEEECCCCcEEE
Confidence            887 4 34432221122   44556778889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC---CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKK---PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||+++......   .....++..|++||+.. ..++ .+|+|+   ++|+++..+..||.+.+.   .+.        
T Consensus       326 ~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~---~~~--------  394 (454)
T 1qcf_A          326 ADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN---PEV--------  394 (454)
T ss_dssp             CSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH---HHH--------
T ss_pred             eeCCCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH---HHH--------
Confidence            9999998765432   12233567899999853 3344 556666   777777767888755331   110        


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                                ...+....      ++    +....+++.+.+  +...|...+|..|| ..++++.|....
T Consensus       395 ----------~~~i~~~~------~~----~~~~~~~~~l~~--li~~cl~~dp~~RPt~~~i~~~L~~~~  443 (454)
T 1qcf_A          395 ----------IRALERGY------RM----PRPENCPEELYN--IMMRCWKNRPEERPTFEYIQSVLDDFY  443 (454)
T ss_dssp             ----------HHHHHHTC------CC----CCCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred             ----------HHHHHcCC------CC----CCCCCCCHHHHH--HHHHHccCChhHCcCHHHHHHHHHHHH
Confidence                      01111100      01    112334445555  67777788888888 777777776643

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.96  E-value=5.6e-29  Score=230.03  Aligned_cols=256  Identities=14%  Similarity=0.039  Sum_probs=170.2

Q ss_pred             CCCceEEEece----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee--cCCeEE
Q psy6542          12 RVSKWRVKPPS----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS--EPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~--~~~~~~   85 (334)
                      +++...||+|.    +..+++.||||++.....  ...+.+.+|+++++.++||||        +++++++.  +.+.+|
T Consensus        33 ~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           33 KGNFGSVELCRYDPLGDNTGALVAVKQLQHSGP--DQQRDFQREIQILKALHSDFI--------VKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             EETTEEEEEEEECTTSSSCSEEEEEEEESSCCH--HHHHHHHHHHHHHHTCCCTTB--------CCEEEEEECSSSCEEE
T ss_pred             CCCCeEEEEEEeccCCCCcceEEEEEEeccCCH--HHHHHHHHHHHHHHhcCCCce--------eEEEEEEecCCCceEE
Confidence            46778999998    678999999999986533  344568899999999999999        99999886  456799


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+||+++.+
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~al~~lH~~~----------------ivH~Dikp~NIl~~~~  163 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHRARL---DASRLLLYSSQICKGMEYLGSRR----------------CVHRDLAARNILVESE  163 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEEET
T ss_pred             EEEeecCCCCHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccCCCCChhhEEECCC
Confidence            999999887 544433322223   55566778889999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCC-----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         165 GHVRISDLGLACDFSKKKP-----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      +.+||+|||+++.......     ....++..|++||+.. .. ...+|+|+   ++|+++. +..||.....    +..
T Consensus       164 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~-g~~p~~~~~~----~~~  238 (327)
T 3lxl_A          164 AHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFT-YCDKSCSPSA----EFL  238 (327)
T ss_dssp             TEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHT-TTCGGGSHHH----HHH
T ss_pred             CCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHh-CCCCCccccc----hhh
Confidence            9999999999987654432     2344677899999843 22 34566666   5555555 4445433211    000


Q ss_pred             hcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHhCC
Q psy6542         235 FMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKAGK  313 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~~~  313 (334)
                      .....   ..+..   ....+...+..      ....+..+..++.+.+  +...|...+|..|+ +.++++++......
T Consensus       239 ~~~~~---~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~l~~--li~~~l~~dP~~Rps~~ell~~L~~~~~~  304 (327)
T 3lxl_A          239 RMMGC---ERDVP---ALSRLLELLEE------GQRLPAPPACPAEVHE--LMKLCWAPSPQDRPSFSALGPQLDMLWSG  304 (327)
T ss_dssp             HHCC-------CC---HHHHHHHHHHT------TCCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred             hhccc---ccccc---cHHHHHHHhhc------ccCCCCCCcccHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence            00000   00111   01111111111      0111122344455555  88888899999999 89998888875444


Q ss_pred             CC
Q psy6542         314 IY  315 (334)
Q Consensus       314 ~~  315 (334)
                      ..
T Consensus       305 ~~  306 (327)
T 3lxl_A          305 SR  306 (327)
T ss_dssp             --
T ss_pred             hc
Confidence            33

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.96  E-value=1.6e-29  Score=234.20  Aligned_cols=224  Identities=14%  Similarity=0.121  Sum_probs=142.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||++...     ....+.+|+.+++.+. ||||        +++++++.+++.+|+||||
T Consensus        21 ~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~l~~l~~h~ni--------v~~~~~~~~~~~~~lv~e~   87 (325)
T 3kn6_A           21 EGSFSICRKCVHKKSNQAFAVKIISKR-----MEANTQKEITALKLCEGHPNI--------VKLHEVFHDQLHTFLVMEL   87 (325)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEGG-----GHHHHHHHHHHHHHTTTCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEChh-----hhhhHHHHHHHHHHhcCCCCe--------eEEEEEEEcCCEEEEEEEc
Confidence            467789999999999999999999743     2345667999999997 9999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC---C
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG---H  166 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~---~  166 (334)
                      ++|+ +....... ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.++   .
T Consensus        88 ~~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~~l~~LH~~~----------------ivH~Dlkp~NIll~~~~~~~~  147 (325)
T 3kn6_A           88 LNGGELFERIKKK-KHF---SETEASYIMRKLVSAVSHMHDVG----------------VVHRDLKPENLLFTDENDNLE  147 (325)
T ss_dssp             CCSCBHHHHHHHC-SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEEEC----CE
T ss_pred             cCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CeecCCCHHHEEEecCCCccc
Confidence            9987 43332222 233   44556677789999999999999                99999999999997765   7


Q ss_pred             EEEEecccccccCCCC--CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCc----cc---
Q psy6542         167 VRISDLGLACDFSKKK--PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSK----PE---  232 (334)
Q Consensus       167 vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~----~~---  232 (334)
                      +||+|||+++......  ....+||+.|++||+.. ..++ .+|+|+   ++|+++. +..||.+......    .+   
T Consensus       148 ~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~~~~~~~  226 (325)
T 3kn6_A          148 IKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLS-GQVPFQSHDRSLTCTSAVEIMK  226 (325)
T ss_dssp             EEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHHHHHH-SSCTTC-------CCCHHHHHH
T ss_pred             EEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHh-CCCCCCCCccccccccHHHHHH
Confidence            9999999998665443  24456799999999853 3344 455566   5556555 6668766543211    11   


Q ss_pred             chhccccccccccc---ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         233 LIFMDQIEEVSQDL---ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       233 ~i~~~~~~~~~~~~---~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+..... ..+...   .+......+...+..||..|++..
T Consensus       227 ~i~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  266 (325)
T 3kn6_A          227 KIKKGDF-SFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMS  266 (325)
T ss_dssp             HHTTTCC-CCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTT
T ss_pred             HHHcCCC-CCCcccccCCCHHHHHHHHHHCCCChhHCCCHH
Confidence            1111111 111111   111344566777778999988865

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.96  E-value=4.6e-29  Score=226.00  Aligned_cols=239  Identities=12%  Similarity=0.033  Sum_probs=165.9

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchH--H---hhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESR--V---AKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~--~---~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      .+++.+.||+|.+..+++.||||++........  .   .+.+.+|+++++.++||||        +++++++.+..  +
T Consensus        28 g~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~--~   97 (287)
T 4f0f_A           28 GKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNI--------VKLYGLMHNPP--R   97 (287)
T ss_dssp             CCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTB--------CCEEEEETTTT--E
T ss_pred             ccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCc--------hhhheeecCCC--e
Confidence            357778999999999999999999986554211  1   1578889999999999999        99999997665  7


Q ss_pred             EEEEccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          86 IIGVRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        86 ivmEy~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +||||++|+ + +.+ ......+   .....+.++.|++.||.|||+++              ++|+||||||+||+++.
T Consensus        98 lv~e~~~~~~L~~~l-~~~~~~~---~~~~~~~~~~~l~~~l~~lH~~~--------------~~ivH~dikp~Nil~~~  159 (287)
T 4f0f_A           98 MVMEFVPCGDLYHRL-LDKAHPI---KWSVKLRLMLDIALGIEYMQNQN--------------PPIVHRDLRSPNIFLQS  159 (287)
T ss_dssp             EEEECCTTCBHHHHH-HCTTSCC---CHHHHHHHHHHHHHHHHHHHTSS--------------SCCBCSCCSGGGEEESC
T ss_pred             EEEEecCCCCHHHHH-hcccCCc---cHHHHHHHHHHHHHHHHHHHhCC--------------CCeecCCCCcceEEEec
Confidence            999999977 4 334 2222223   45556677889999999999987              44999999999999988


Q ss_pred             CCC-----EEEEecccccccCCCCCCccccCcccccccccc---ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcc
Q psy6542         164 HGH-----VRISDLGLACDFSKKKPHASVESDCILHGYIKK---LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKP  231 (334)
Q Consensus       164 ~~~-----vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~---~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~  231 (334)
                      ++.     +||+|||+++..... .....||+.|++||+..   ..++ .+|+|+   ++|+++. +..||...+.....
T Consensus       160 ~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~-g~~pf~~~~~~~~~  237 (287)
T 4f0f_A          160 LDENAPVCAKVADFGLSQQSVHS-VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILT-GEGPFDEYSYGKIK  237 (287)
T ss_dssp             CCTTCSCCEEECCCTTCBCCSSC-EECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHH-SSCTTTTCCCCHHH
T ss_pred             cCCCCceeEEeCCCCcccccccc-ccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHc-CCCCCccccccHHH
Confidence            876     999999999855443 33456899999999852   2233 566666   5566655 56676543311000


Q ss_pred             cchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         232 ELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                         ....+..   .      .........+++.+.+  +...+...+|..|+ +.++++.+.+
T Consensus       238 -------------------~~~~~~~---~------~~~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~~ll~~L~~  286 (287)
T 4f0f_A          238 -------------------FINMIRE---E------GLRPTIPEDCPPRLRN--VIELCWSGDPKKRPHFSYIVKELSE  286 (287)
T ss_dssp             -------------------HHHHHHH---S------CCCCCCCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             -------------------HHHHHhc---c------CCCCCCCcccCHHHHH--HHHHHhcCChhhCcCHHHHHHHHHh
Confidence                               0000000   0      0000011233344445  77888888999999 8888887753

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.96  E-value=8.9e-30  Score=231.49  Aligned_cols=237  Identities=12%  Similarity=0.078  Sum_probs=165.8

Q ss_pred             CCCceEEEec--eeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPP--SLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a--~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|  ....+++.||||+++....+....+.+.+|+++++.++||||        +++++++ ..+.+|+|||
T Consensus        27 ~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~-~~~~~~lv~e   97 (291)
T 1xbb_A           27 SGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI--------VRMIGIC-EAESWMLVME   97 (291)
T ss_dssp             ECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTB--------CCEEEEE-ESSSEEEEEE
T ss_pred             cccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCE--------EEEEEEE-CCCCcEEEEE
Confidence            4778899999  557788999999998766555556788899999999999999        9999999 5677899999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +..+.... ..+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.+|
T Consensus        98 ~~~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~~l~~LH~~~----------------i~H~dikp~Nil~~~~~~~k  157 (291)
T 1xbb_A           98 MAELGPLNKYLQQN-RHV---KDKNIIELVHQVSMGMKYLEESN----------------FVHRDLAARNVLLVTQHYAK  157 (291)
T ss_dssp             CCTTEEHHHHHHHC-TTC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEEETTEEE
T ss_pred             eCCCCCHHHHHHhC-cCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eEcCCCCcceEEEeCCCcEE
Confidence            99987 54433322 122   45556778889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC-----CccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         169 ISDLGLACDFSKKKP-----HASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       169 l~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      |+|||+++.......     ....+++.|++||+... . ...+|+|+   ++|+++..+..||.+.+...         
T Consensus       158 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---------  228 (291)
T 1xbb_A          158 ISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE---------  228 (291)
T ss_dssp             ECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---------
T ss_pred             EccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH---------
Confidence            999999987655432     12334678999998532 2 44566676   66677665777875543110         


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                      +...+....  +.    +.....++.+..  +...|...+|..|+ +.++++.+...
T Consensus       229 ----------------~~~~~~~~~--~~----~~~~~~~~~l~~--li~~~l~~dp~~Rps~~~l~~~L~~~  277 (291)
T 1xbb_A          229 ----------------VTAMLEKGE--RM----GCPAGCPREMYD--LMNLCWTYDVENRPGFAAVELRLRNY  277 (291)
T ss_dssp             ----------------HHHHHHTTC--CC----CCCTTCCHHHHH--HHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             ----------------HHHHHHcCC--CC----CCCCCCCHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHH
Confidence                            000110000  00    011233444455  77788888888888 77777777654

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.96  E-value=6.4e-29  Score=226.01  Aligned_cols=185  Identities=12%  Similarity=0.074  Sum_probs=145.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+++.||+|++..... .....+.+.+|+++++.++||||        +++++++.+++.+|+||||
T Consensus        25 ~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~   96 (294)
T 2rku_A           25 KGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHV--------VGFHGFFEDNDFVFVVLEL   96 (294)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             ecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCE--------eeeeeeeccCCEEEEEEec
Confidence            46778999999999999999999986543 34455678889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ..+   .....+.++.|++.||.|||+++                ++||||||+||+++.++.+||
T Consensus        97 ~~~~~L~~~~~~~-~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------i~H~dl~p~Nil~~~~~~~kl  156 (294)
T 2rku_A           97 CRRRSLLELHKRR-KAL---TEPEARYYLRQIVLGCQYLHRNR----------------VIHRDLKLGNLFLNEDLEVKI  156 (294)
T ss_dssp             CTTCBHHHHHHHH-CSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTCCEEE
T ss_pred             CCCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCChHhEEEcCCCCEEE
Confidence            9987 43332321 123   44556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||+++......  .....|++.|++||+.. .. ...+|+|+   ++|+++. +..||...
T Consensus       157 ~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~  218 (294)
T 2rku_A          157 GDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV-GKPPFETS  218 (294)
T ss_dssp             CCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHH-SSCTTCCS
T ss_pred             EeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCC
Confidence            9999998765332  33456889999999853 22 44566666   5556555 56676443

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.96  E-value=1.1e-29  Score=229.11  Aligned_cols=194  Identities=16%  Similarity=0.139  Sum_probs=144.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee--cCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS--EPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~--~~~~~~ivmE   89 (334)
                      +++.+.||+|.++.+|+.||+|.+..........+.+.+|+++++.++||||        +++++++.  .++.+|+|||
T Consensus        16 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~lv~e   87 (279)
T 2w5a_A           16 TGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI--------VRYYDRIIDRTNTTLYIVME   87 (279)
T ss_dssp             ECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEEEGGGTEEEEEEE
T ss_pred             CCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCC--------CeEEEEEecCCCceEEEEEe
Confidence            4677899999999999999999999876655566788899999999999999        99999874  4678999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +..+...............++.++.|++.||.|||+.+.           +..+|+||||||+||+++.++.+|
T Consensus        88 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~-----------~~~~ivH~dl~p~NIl~~~~~~~k  156 (279)
T 2w5a_A           88 YCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSD-----------GGHTVLHRDLKPANVFLDGKQNVK  156 (279)
T ss_dssp             CCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC-----------------CCCCCSGGGEEECSSSCEE
T ss_pred             CCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccC-----------CCCeeEEeccchhhEEEcCCCCEE
Confidence            99986 544433322211123556677888899999999999761           123399999999999999999999


Q ss_pred             EEecccccccCCCCC--CccccCccccccccccc-cC-Ccceeeh---hHHHHHcCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP--HASVESDCILHGYIKKL-GG-PFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       169 l~DFGla~~~~~~~~--~~~~~t~~~~~~~v~~~-~~-~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |+|||+++.......  ....|++.|++||+... .+ ..+|+|+   ++|+++. +..||...
T Consensus       157 l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~  219 (279)
T 2w5a_A          157 LGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCA-LMPPFTAF  219 (279)
T ss_dssp             ECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHH-SSCSSCCS
T ss_pred             EecCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHH-CCCCCccc
Confidence            999999987655432  23467899999998532 33 4566666   5566655 45566443

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.96  E-value=5.1e-29  Score=231.44  Aligned_cols=185  Identities=12%  Similarity=0.074  Sum_probs=146.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+..+++.||+|++..... .....+.+.+|+++++.++||||        +++++++.+++.+|+||||
T Consensus        51 ~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~  122 (335)
T 2owb_A           51 KGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHV--------VGFHGFFEDNDFVFVVLEL  122 (335)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEecCCeEEEEEec
Confidence            46778999999999999999999986543 34455678889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ..+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.+||
T Consensus       123 ~~~~~L~~~~~~~-~~l---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~dlkp~NIl~~~~~~~kl  182 (335)
T 2owb_A          123 CRRRSLLELHKRR-KAL---TEPEARYYLRQIVLGCQYLHRNR----------------VIHRDLKLGNLFLNEDLEVKI  182 (335)
T ss_dssp             CTTCBHHHHHHHH-CSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEECTTCCEEE
T ss_pred             CCCCCHHHHHhcc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CEecCCCchhEEEcCCCCEEE
Confidence            9987 44333322 223   44556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||+++......  .....|++.|++||+.. .. ...+|+|+   ++|+++. +..||...
T Consensus       183 ~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~  244 (335)
T 2owb_A          183 GDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV-GKPPFETS  244 (335)
T ss_dssp             CCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHH-SSCTTCCS
T ss_pred             eeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHH-CcCCCCCC
Confidence            9999998765332  34456899999999843 33 34566666   5566655 56676543

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.96  E-value=1.1e-29  Score=227.49  Aligned_cols=236  Identities=14%  Similarity=0.099  Sum_probs=169.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+. +++.||||.+.......   +.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        18 ~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~---~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   85 (267)
T 3t9t_A           18 SGQFGLVHLGYWL-NKDKVAIKTIREGAMSE---EDFIEEAEVMMKLSHPKL--------VQLYGVCLEQAPICLVTEFM   85 (267)
T ss_dssp             EETTEEEEEEEET-TTEEEEEEEECTTTBCH---HHHHHHHHHHHTCCCTTB--------CCEEEEECSSSSCEEEECCC
T ss_pred             CCCceeEEEEEec-CCCeEEEEEccccCCCH---HHHHHHHHHHHhCCCCCE--------eeEEEEEccCCCeEEEEeCC
Confidence            4677899999987 57889999998765432   457789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+.......+   ....++.++.|++.||.|||+++                ++||||||+||+++.++.+||+
T Consensus        86 ~~~~L~~~~~~~~~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dl~p~Nili~~~~~~kl~  146 (267)
T 3t9t_A           86 EHGCLSDYLRTQRGLF---AAETLLGMCLDVCEGMAYLEEAC----------------VIHRDLAARNCLVGENQVIKVS  146 (267)
T ss_dssp             TTCBHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSSCCGGGEEECGGGCEEEC
T ss_pred             CCCcHHHHHhhCcccC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCchheEEECCCCCEEEc
Confidence            887 544433322223   45556777889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC---CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         171 DLGLACDFSKKK---PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       171 DFGla~~~~~~~---~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |||+++......   .....++..|++||+.. ..+ ..+|+|+   ++|+++..+..||...+..   +.         
T Consensus       147 dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~---~~---------  214 (267)
T 3t9t_A          147 DFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS---EV---------  214 (267)
T ss_dssp             CTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---HH---------
T ss_pred             ccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH---HH---------
Confidence            999998664432   22344577899999853 333 4566666   6677766577787543310   00         


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                               ...+.... .     .    ......++.+.+  +..++...+|..|+ +.++++.+....
T Consensus       215 ---------~~~i~~~~-~-----~----~~~~~~~~~l~~--li~~~l~~~p~~Rps~~~ll~~L~~l~  263 (267)
T 3t9t_A          215 ---------VEDISTGF-R-----L----YKPRLASTHVYQ--IMNHCWRERPEDRPAFSRLLRQLAEIA  263 (267)
T ss_dssp             ---------HHHHHTTC-C-----C----CCCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ---------HHHHhcCC-c-----C----CCCccCcHHHHH--HHHHHccCChhhCcCHHHHHHHHHHHH
Confidence                     00111000 0     0    011122333344  77888888999999 888888887653

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.96  E-value=1.5e-29  Score=232.14  Aligned_cols=242  Identities=10%  Similarity=-0.010  Sum_probs=159.8

Q ss_pred             CCCceEEEeceeCC---CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC-----e
Q psy6542          12 RVSKWRVKPPSLKP---LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN-----S   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~---~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~-----~   83 (334)
                      +++.+.||+|....   +++.||||.++.........+.+.+|+++++.++||||        +++++++.+.+     .
T Consensus        44 ~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~  115 (313)
T 3brb_A           44 EGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNV--------IRLLGVCIEMSSQGIPK  115 (313)
T ss_dssp             C-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTB--------CCCCEEEEC-------C
T ss_pred             ecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCe--------eeeeEEEeeccccCCcc
Confidence            56777899887765   66689999998776655556678899999999999999        99999988654     4


Q ss_pred             EEEEEEccCCC-hhHHhh-hhh-hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCcee
Q psy6542          84 HYIIGVRQSGP-KDQISR-SKI-NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANIL  160 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~-~~~-~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiL  160 (334)
                      .|+||||+.++ +..+.. ... ..........++.++.|++.||.|||+++                |+||||||+||+
T Consensus       116 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~dikp~NIl  179 (313)
T 3brb_A          116 PMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRN----------------FLHRDLAARNCM  179 (313)
T ss_dssp             EEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTT----------------CCCCCCSGGGEE
T ss_pred             cEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCcceEE
Confidence            59999999987 443322 211 11122355667788889999999999999                999999999999


Q ss_pred             eCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcc
Q psy6542         161 LDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKP  231 (334)
Q Consensus       161 l~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~  231 (334)
                      ++.++.+||+|||+++......    .....+++.|++||+.. ..+ ..+|+|+   ++|+++.++.+||.+.......
T Consensus       180 i~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~  259 (313)
T 3brb_A          180 LRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMY  259 (313)
T ss_dssp             ECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH
T ss_pred             EcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHH
Confidence            9999999999999998765432    12334577899999853 333 4566666   6677777677787554321111


Q ss_pred             cchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         232 ELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                      ..+                     ....          ..+....+++.+.+  +...|...+|..|+ +.++++++.+.
T Consensus       260 ~~~---------------------~~~~----------~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~~l~~~L~~l  306 (313)
T 3brb_A          260 DYL---------------------LHGH----------RLKQPEDCLDELYE--IMYSCWRTDPLDRPTFSVLRLQLEKL  306 (313)
T ss_dssp             HHH---------------------HTTC----------CCCCBTTCCHHHHH--HHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHH---------------------HcCC----------CCCCCccccHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            000                     0000          00011223334444  77778888888888 78887777664

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.96  E-value=2.9e-29  Score=228.57  Aligned_cols=241  Identities=13%  Similarity=0.019  Sum_probs=166.8

Q ss_pred             CCCceEEEeceeCCCC---CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEe-ecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLG---FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVT-SEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~---~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~-~~~~~~~iv   87 (334)
                      +++.+.||+|.+..++   ..||+|.+..... ....+.+.+|+.+++.++||||        +++++++ ..++..|+|
T Consensus        35 ~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~v  105 (298)
T 3f66_A           35 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITD-IGEVSQFLTEGIIMKDFSHPNV--------LSLLGICLRSEGSPLVV  105 (298)
T ss_dssp             EETTEEEEEEEEC-----CEEEEEEEETTCCS-HHHHHHHHHHHHHHHTCCCTTB--------CCCCEEECCSSSCCEEE
T ss_pred             ecCCceEEEEEEecCCCceeEEEEEecccCCC-HHHHHHHHHHHHHHHhCCCCCE--------eeeeeEEEcCCCceEEE
Confidence            4778899999875433   4589999886443 3344578889999999999999        9999985 456788999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||++|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.
T Consensus       106 ~e~~~~~~L~~~l~~~~~~~---~~~~~~~i~~ql~~~l~~lH~~~----------------i~H~dikp~Nil~~~~~~  166 (298)
T 3f66_A          106 LPYMKHGDLRNFIRNETHNP---TVKDLIGFGLQVAKGMKYLASKK----------------FVHRDLAARNCMLDEKFT  166 (298)
T ss_dssp             EECCTTCBHHHHHHCTTCCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEECTTCC
T ss_pred             EeCCCCCCHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccCCCCchheEEECCCCC
Confidence            9999997 544433322223   44556777889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC------CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchh
Q psy6542         167 VRISDLGLACDFSKKK------PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIF  235 (334)
Q Consensus       167 vkl~DFGla~~~~~~~------~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~  235 (334)
                      +||+|||+++......      .....+|+.|++||+.. ..+ ..+|+|+   ++|+++.++.+||.+.+.......+.
T Consensus       167 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~  246 (298)
T 3f66_A          167 VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLL  246 (298)
T ss_dssp             EEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHH
T ss_pred             EEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHh
Confidence            9999999998664432      22344577899999843 333 4556666   77777777887775544221111110


Q ss_pred             cccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHhCC
Q psy6542         236 MDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKAGK  313 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~~~  313 (334)
                      ....                               .......+..+.+  +...+...+|..|+ +.++++.+.+....
T Consensus       247 ~~~~-------------------------------~~~~~~~~~~l~~--li~~~l~~~p~~Rps~~ell~~L~~~~~~  292 (298)
T 3f66_A          247 QGRR-------------------------------LLQPEYCPDPLYE--VMLKCWHPKAEMRPSFSELVSRISAIFST  292 (298)
T ss_dssp             TTCC-------------------------------CCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             cCCC-------------------------------CCCCccCCHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            0000                               0011122333344  77788888899988 88888888775443

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.96  E-value=3.8e-29  Score=229.04  Aligned_cols=242  Identities=12%  Similarity=0.027  Sum_probs=171.5

Q ss_pred             CCCceEEEece-----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPS-----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~-----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++.+.||+|.     +..+++.||||+++..... ...+.+.+|+++++.+ +||||        +++++++.+++..|
T Consensus        33 ~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~~h~~i--------~~~~~~~~~~~~~~  103 (313)
T 1t46_A           33 AGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHL-TEREALMSELKVLSYLGNHMNI--------VNLLGACTIGGPTL  103 (313)
T ss_dssp             ECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCH-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCE
T ss_pred             ccCCcceEEEEEeeccccchhhhhHHHhcCcchhH-HHHHHHHHHHHHHhhcccCCCe--------eeEEEEEecCCCcE
Confidence            46778999998     4678899999999865542 2346788999999999 99999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhhh--------------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE
Q psy6542          86 IIGVRQSGP-KDQISRSKINR--------------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH  150 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii  150 (334)
                      +||||++|+ +..+.......              ........++.++.|++.||.|||+++                |+
T Consensus       104 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~----------------i~  167 (313)
T 1t46_A          104 VITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN----------------CI  167 (313)
T ss_dssp             EEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT----------------CC
T ss_pred             EEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCC----------------ee
Confidence            999999987 44333322111              001355667788889999999999999                99


Q ss_pred             eeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCccccccccc-ccc-CCcceeeh---hHHHHHcCCCCC
Q psy6542         151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIK-KLG-GPFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       151 HrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~-~~~-~~~~~~w~---~~~~~l~~~~~~  221 (334)
                      ||||||+||+++.++.+||+|||+++.......    ....+++.|++||+. ... ...+|+|+   ++|+++..+..|
T Consensus       168 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p  247 (313)
T 1t46_A          168 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSP  247 (313)
T ss_dssp             CSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             cCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999987765543    223457789999974 233 34566666   667776657778


Q ss_pred             CCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-h
Q psy6542         222 LHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-S  300 (334)
Q Consensus       222 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~  300 (334)
                      |.+.......                    ...+.... .     .    +.....+..+..  +...+...+|..|+ +
T Consensus       248 ~~~~~~~~~~--------------------~~~~~~~~-~-----~----~~~~~~~~~l~~--li~~~l~~dp~~Rps~  295 (313)
T 1t46_A          248 YPGMPVDSKF--------------------YKMIKEGF-R-----M----LSPEHAPAEMYD--IMKTCWDADPLKRPTF  295 (313)
T ss_dssp             STTCCSSHHH--------------------HHHHHHTC-C-----C----CCCTTSCHHHHH--HHHHHTCSSGGGSCCH
T ss_pred             CCcccchhHH--------------------HHHhccCC-C-----C----CCcccCCHHHHH--HHHHHcCCCchhCcCH
Confidence            7554321000                    00011000 0     0    011223334444  78888889999999 8


Q ss_pred             HHHHHHHHHH
Q psy6542         301 QELLGSMARK  310 (334)
Q Consensus       301 ~~lL~~l~~~  310 (334)
                      .++++.+.+.
T Consensus       296 ~ell~~L~~~  305 (313)
T 1t46_A          296 KQIVQLIEKQ  305 (313)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877764

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=234.98  Aligned_cols=182  Identities=16%  Similarity=0.150  Sum_probs=138.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCC--CCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRN--EPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h--~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|.+. +++.||||++..........+.+.+|+++++.++|  +||        +++++++.+++.+|+|||
T Consensus        19 ~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i--------v~~~~~~~~~~~~~lv~e   89 (343)
T 3dbq_A           19 SGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKI--------IRLYDYEITDQYIYMVME   89 (343)
T ss_dssp             CCSSEEEEEEECT-TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTB--------CCEEEEEECSSEEEEEEC
T ss_pred             cCCCeEEEEEEeC-CCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCce--------EEEeeeEeeCCEEEEEEe
Confidence            5788899999885 59999999999776666666788899999999987  899        999999999999999999


Q ss_pred             ccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          90 RQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        90 y~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |..|++..+.... ..+   .......++.|++.||.|||+++                |+||||||+|||++ ++.+||
T Consensus        90 ~~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~al~~lH~~~----------------iiHrDikp~NIll~-~~~~kl  148 (343)
T 3dbq_A           90 CGNIDLNSWLKKK-KSI---DPWERKSYWKNMLEAVHTIHQHG----------------IVHSDLKPANFLIV-DGMLKL  148 (343)
T ss_dssp             CCSEEHHHHHHHS-CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEEE-TTEEEE
T ss_pred             CCCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCcceEEEE-CCcEEE
Confidence            7666654433322 233   34445667789999999999999                99999999999997 578999


Q ss_pred             EecccccccCCCCC----CccccCcccccccccc------------ccC-Ccceeeh---hHHHHHcCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP----HASVESDCILHGYIKK------------LGG-PFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       170 ~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~------------~~~-~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|||+++.......    ....||+.|++||+..            ..+ ..+|+|+   ++|+++. +..||..
T Consensus       149 ~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~  222 (343)
T 3dbq_A          149 IDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY-GKTPFQQ  222 (343)
T ss_dssp             CCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHH-SSCTTTT
T ss_pred             eecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHh-CCCcchh
Confidence            99999987654432    3457899999999853            223 3566666   5566554 5667754

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.1e-29  Score=239.79  Aligned_cols=246  Identities=13%  Similarity=0.028  Sum_probs=163.0

Q ss_pred             CCCceEEEeceeCCC---CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee-cCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPL---GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS-EPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~---~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~-~~~~~~iv   87 (334)
                      +++.+.||+|....+   +..||||.++..... ...+.+.+|+.+++.++||||        +++++++. .++..|+|
T Consensus        99 ~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~il~~l~hpnI--------v~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           99 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDI-GEVSQFLTEGIIMKDFSHPNV--------LSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             CCSSSEEEEEEEEETTTEEEEEEEEECCSCSCS-HHHHHHHHHHTTSTTCCCTTB--------CCCCEEECCCSSCCEEE
T ss_pred             eCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCH-HHHHHHHHHHHHHHhCCCCCc--------ceEEEEEEcCCCCeEEE
Confidence            577889999987643   346899998764432 345578889999999999999        99999865 45688999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||++|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.
T Consensus       170 ~e~~~~g~L~~~l~~~~~~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivHrDlkp~NIll~~~~~  230 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETHNP---TVKDLIGFGLQVAKGMKFLASKK----------------FVHRDLAARNCMLDEKFT  230 (373)
T ss_dssp             EECCTTCBHHHHHHCTTCCC---BHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTCC
T ss_pred             EECCCCCCHHHHHhhcccCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EecCccchheEEECCCCC
Confidence            9999987 544433322222   44556677889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC------CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchh
Q psy6542         167 VRISDLGLACDFSKKK------PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIF  235 (334)
Q Consensus       167 vkl~DFGla~~~~~~~------~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~  235 (334)
                      +||+|||+++......      .....+++.|++||+.. ..++ .+|+|+   ++|++++++.+||...+.......+.
T Consensus       231 ~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~  310 (373)
T 3c1x_A          231 VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLL  310 (373)
T ss_dssp             EEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHH
T ss_pred             EEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH
Confidence            9999999998664332      12234567899999853 3344 555566   77888887888876544221111000


Q ss_pred             cccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHhCCC
Q psy6542         236 MDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKAGKI  314 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~~~~  314 (334)
                      ..                       .        ..+....++..+.+  +...|...+|..|+ +.++++.+.......
T Consensus       311 ~~-----------------------~--------~~~~p~~~~~~l~~--li~~cl~~dp~~RPs~~ell~~L~~i~~~~  357 (373)
T 3c1x_A          311 QG-----------------------R--------RLLQPEYCPDPLYE--VMLKCWHPKAEMRPSFSELVSRISAIFSTF  357 (373)
T ss_dssp             TT-----------------------C--------CCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred             cC-----------------------C--------CCCCCCCCCHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence            00                       0        00011223344445  66777788888888 888888887765544


Q ss_pred             CCCc
Q psy6542         315 YGTT  318 (334)
Q Consensus       315 ~~~~  318 (334)
                      .+..
T Consensus       358 ~~~~  361 (373)
T 3c1x_A          358 IGEH  361 (373)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            4433

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.96  E-value=4e-29  Score=228.60  Aligned_cols=183  Identities=18%  Similarity=0.176  Sum_probs=142.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||||+++.....  ....+.+|+++++.++||||        +++++++.+.+.+|+||||+
T Consensus        19 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   88 (304)
T 2jam_A           19 SGAFSEVFLVKQRLTGKLFALKCIKKSPAF--RDSSLENEIAVLKKIKHENI--------VTLEDIYESTTHYYLVMQLV   88 (304)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEECC--------HHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEEECCC
T ss_pred             CCCCceEEEEEECCCCCEEEEEEEeccccc--chHHHHHHHHHHHhCCCCCe--------eehhhhcccCCEEEEEEEcC
Confidence            467789999999999999999999865432  23457789999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee---CCCCC
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL---DEHGH  166 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl---~~~~~  166 (334)
                      +|+ + +.+...  ..+   ....++.++.|++.||.|||+++                |+||||||+||++   +.++.
T Consensus        89 ~~~~L~~~l~~~--~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dikp~NIl~~~~~~~~~  147 (304)
T 2jam_A           89 SGGELFDRILER--GVY---TEKDASLVIQQVLSAVKYLHENG----------------IVHRDLKPENLLYLTPEENSK  147 (304)
T ss_dssp             CSCBHHHHHHHH--SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCSCCGGGCEESSSSTTCC
T ss_pred             CCccHHHHHHHc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCCHHHEEEecCCCCCC
Confidence            887 4 333222  123   44556677889999999999999                9999999999999   77889


Q ss_pred             EEEEecccccccCCCCCCccccCccccccccccc-cCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKPHASVESDCILHGYIKKL-GGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~-~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +||+|||+++...........|++.|++||+... .++ .+|+|+   ++|+++. +..||.+..
T Consensus       148 ~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~  211 (304)
T 2jam_A          148 IMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLC-GYPPFYEET  211 (304)
T ss_dssp             EEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHH-SSCTTTTSC
T ss_pred             EEEccCCcceecCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHH-CCCCCCCCC
Confidence            9999999998766555555678999999998533 344 556666   5555555 566776544

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.96  E-value=3.2e-29  Score=231.95  Aligned_cols=242  Identities=15%  Similarity=0.058  Sum_probs=168.8

Q ss_pred             CCCceEEEeceeCCCCC-----cEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGF-----PIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~-----~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++.+.||+|.+..+++     .||||.++..... ...+.+.+|+++++.+ +||||        +++++++.+++.+|
T Consensus        56 ~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~~h~~i--------v~~~~~~~~~~~~~  126 (333)
T 2i1m_A           56 AGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHA-DEKEALMSELKIMSHLGQHENI--------VNLLGACTHGGPVL  126 (333)
T ss_dssp             ECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCH-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCE
T ss_pred             cCCCcceEEEEecCCCcccchhHHHHHhcccccCh-HHHHHHHHHHHHHHhhcCCCCe--------eeEEEEEecCCceE
Confidence            46778999999987775     6999999865542 2445788899999999 89999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhhh----------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINR----------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDL  154 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~----------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDl  154 (334)
                      +||||++|+ +..+.......          ........++.++.|++.||.|||+++                |+||||
T Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~Dl  190 (333)
T 2i1m_A          127 VITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN----------------CIHRDV  190 (333)
T ss_dssp             EEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCC
T ss_pred             EEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC----------------cccCCc
Confidence            999999987 44333322110          011245566788889999999999999                999999


Q ss_pred             CCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         155 KPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       155 Kp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ||+|||++.++.+||+|||+++.......    ....+++.|++||+.. .. +..+|+|+   ++|+++..+..||.+.
T Consensus       191 kp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  270 (333)
T 2i1m_A          191 AARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI  270 (333)
T ss_dssp             SGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             ccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCccc
Confidence            99999999999999999999986644432    2334577899999742 33 34566666   6666666577787554


Q ss_pred             CCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHH
Q psy6542         226 SGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELL  304 (334)
Q Consensus       226 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL  304 (334)
                      ......                    ...+....          ..+.....++.+..  +...|...+|..|+ +.+++
T Consensus       271 ~~~~~~--------------------~~~~~~~~----------~~~~~~~~~~~l~~--li~~~l~~~p~~Rps~~~l~  318 (333)
T 2i1m_A          271 LVNSKF--------------------YKLVKDGY----------QMAQPAFAPKNIYS--IMQACWALEPTHRPTFQQIC  318 (333)
T ss_dssp             CSSHHH--------------------HHHHHHTC----------CCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHH
T ss_pred             chhHHH--------------------HHHHhcCC----------CCCCCCCCCHHHHH--HHHHHhccChhhCcCHHHHH
Confidence            311000                    00000000          00011122333344  77888888898888 77777


Q ss_pred             HHHHHH
Q psy6542         305 GSMARK  310 (334)
Q Consensus       305 ~~l~~~  310 (334)
                      +.+...
T Consensus       319 ~~L~~~  324 (333)
T 2i1m_A          319 SFLQEQ  324 (333)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.96  E-value=1.3e-29  Score=241.52  Aligned_cols=188  Identities=18%  Similarity=0.122  Sum_probs=132.4

Q ss_pred             CCCCceEEEeceeC--CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee--cCCeEEE
Q psy6542          11 SRVSKWRVKPPSLK--PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS--EPNSHYI   86 (334)
Q Consensus        11 ~~~~~~~V~~a~~~--~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~--~~~~~~i   86 (334)
                      -+|+.+.||+|.++  .+++.||||++......    ..+.+|+++|+.++||||        +++++++.  .+..+|+
T Consensus        30 G~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~----~~~~~E~~~l~~l~hpni--------v~~~~~~~~~~~~~~~l   97 (405)
T 3rgf_A           30 GRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS----MSACREIALLRELKHPNV--------ISLQKVFLSHADRKVWL   97 (405)
T ss_dssp             C-----EEEEEEESSSSCCCCEEEEECSSSSCC----HHHHHHHHHHHHCCCTTB--------CCCCEEEEETTTTEEEE
T ss_pred             eecCCeEEEEEEEccCCCCeEEEEEEECCCCCC----HHHHHHHHHHHhcCCCCe--------eeEeeEEecCCCCeEEE
Confidence            35778899999966  67999999999855432    346679999999999999        99999995  4778999


Q ss_pred             EEEccCCCh-hHHhhhhhhh----hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          87 IGVRQSGPK-DQISRSKINR----YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        87 vmEy~~g~l-~~l~~~~~~~----~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      ||||++|++ +.+.......    ........+..++.||+.||.|||+++                |+||||||+|||+
T Consensus        98 v~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~----------------ivH~Dlkp~NIll  161 (405)
T 3rgf_A           98 LFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW----------------VLHRDLKPANILV  161 (405)
T ss_dssp             EEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEE
T ss_pred             EEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC----------------EeCCCcCHHHeEE
Confidence            999999984 3333222111    011345566778889999999999999                9999999999999


Q ss_pred             ----CCCCCEEEEecccccccCCCC-----CCccccCccccccccccc--cCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         162 ----DEHGHVRISDLGLACDFSKKK-----PHASVESDCILHGYIKKL--GGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       162 ----~~~~~vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~~--~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                          +.++.+||+|||+|+......     ....+||+.|++||+...  .++ .+|+|+   ++|++ .++.+||.+..
T Consensus       162 ~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~el-l~g~~pf~~~~  240 (405)
T 3rgf_A          162 MGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAEL-LTSEPIFHCRQ  240 (405)
T ss_dssp             CCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHH-HHSSCTTCCCC
T ss_pred             ecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHH-HhCCCCCCCcc
Confidence                677899999999998765432     234578999999998532  244 456666   55555 45667887655


Q ss_pred             C
Q psy6542         227 G  227 (334)
Q Consensus       227 ~  227 (334)
                      .
T Consensus       241 ~  241 (405)
T 3rgf_A          241 E  241 (405)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.96  E-value=4e-29  Score=237.27  Aligned_cols=183  Identities=16%  Similarity=0.113  Sum_probs=139.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCC--CCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRN--EPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h--~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|.+.. |+.||||++..........+.+.+|+++++.++|  |||        +++++++..++.+|+|||
T Consensus        66 ~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~i--------v~~~~~~~~~~~~~lv~E  136 (390)
T 2zmd_A           66 SGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKI--------IRLYDYEITDQYIYMVME  136 (390)
T ss_dssp             CCSSEEEEEEECTT-CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTB--------CCEEEEEECSSEEEEEEE
T ss_pred             cCCCeEEEEEEcCC-CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeE--------EEEEEEEecCCEEEEEEe
Confidence            57888999999876 9999999998776655566788899999999974  899        999999999999999999


Q ss_pred             ccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          90 RQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        90 y~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |..+++..+.... ..+   .......++.||+.||.|||+++                |+||||||+|||++ ++.+||
T Consensus       137 ~~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~aL~~lH~~~----------------ivHrDlkp~NIll~-~~~~kl  195 (390)
T 2zmd_A          137 CGNIDLNSWLKKK-KSI---DPWERKSYWKNMLEAVHTIHQHG----------------IVHSDLKPANFLIV-DGMLKL  195 (390)
T ss_dssp             CCSEEHHHHHHHC-SSC---CHHHHHHHHHHHHHHHHHHHTTT----------------CCCCCCCGGGEEES-SSCEEE
T ss_pred             cCCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeecCCCHHHEEEE-CCeEEE
Confidence            6655554443332 233   33445567789999999999999                99999999999995 589999


Q ss_pred             EecccccccCCCC----CCccccCccccccccccc------------cCC-cceeeh---hHHHHHcCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK----PHASVESDCILHGYIKKL------------GGP-FVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       170 ~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~------------~~~-~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +|||+++.+....    ....+||+.|++||+...            .++ .+|+|+   ++|+++ ++..||...
T Consensus       196 ~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell-~G~~Pf~~~  270 (390)
T 2zmd_A          196 IDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMT-YGKTPFQQI  270 (390)
T ss_dssp             CCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHH-HSSCTTTTC
T ss_pred             EecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHH-HCCCcchhh
Confidence            9999998765443    234578999999998532            233 566666   555554 556677554

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.96  E-value=7.1e-30  Score=235.13  Aligned_cols=243  Identities=12%  Similarity=0.024  Sum_probs=172.4

Q ss_pred             CCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++.+.||+|.++     .+++.||||.+...... .....+.+|+++++.++||||        +++++++.+++..|+
T Consensus        35 ~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~l  105 (322)
T 1p4o_A           35 QGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASM-RERIEFLNEASVMKEFNCHHV--------VRLLGVVSQGQPTLV  105 (322)
T ss_dssp             ECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCH-HHHHHHHHHHHHGGGCCCTTB--------CCEEEEECSSSSCEE
T ss_pred             cCCceEEEeeeecCccCCCCceEEEEEecccccCH-HHHHHHHHHHHHHHhcCCCCE--------eeeEEEEccCCccEE
Confidence            4677899999877     56889999999865432 234568889999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          87 IGVRQSGP-KDQISRSKINR------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                      ||||++|+ +..+.......      ........++.++.|++.||.|||+++                |+||||||+||
T Consensus       106 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~----------------i~H~dikp~NI  169 (322)
T 1p4o_A          106 IMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK----------------FVHRDLAARNC  169 (322)
T ss_dssp             EEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT----------------CBCSCCSGGGE
T ss_pred             EEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCC----------------CccCCCccceE
Confidence            99999987 44333322110      012245566788889999999999999                99999999999


Q ss_pred             eeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCc
Q psy6542         160 LLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSK  230 (334)
Q Consensus       160 Ll~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~  230 (334)
                      +++.++.+||+|||+++.......    ....+++.|++||+.. ..+ ..+|+|+   ++|+++.++..||.+.+... 
T Consensus       170 li~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~-  248 (322)
T 1p4o_A          170 MVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ-  248 (322)
T ss_dssp             EECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHH-
T ss_pred             EEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHH-
Confidence            999999999999999986644322    2334578899999853 233 4566666   77777776777775433110 


Q ss_pred             ccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         231 PELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                              +...+....      ..+....++..+.+  +...+...+|..|+ +.++++++.+
T Consensus       249 ------------------------~~~~~~~~~------~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~e~l~~L~~  296 (322)
T 1p4o_A          249 ------------------------VLRFVMEGG------LLDKPDNCPDMLFE--LMRMCWQYNPKMRPSFLEIISSIKE  296 (322)
T ss_dssp             ------------------------HHHHHHTTC------CCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHGG
T ss_pred             ------------------------HHHHHHcCC------cCCCCCCCCHHHHH--HHHHHcCCCcccCcCHHHHHHHHHH
Confidence                                    000000000      00011233333444  77888888999999 8899998877


Q ss_pred             HhC
Q psy6542         310 KAG  312 (334)
Q Consensus       310 ~~~  312 (334)
                      ...
T Consensus       297 ~~~  299 (322)
T 1p4o_A          297 EME  299 (322)
T ss_dssp             GSC
T ss_pred             hhc
Confidence            544

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.96  E-value=5.3e-29  Score=229.67  Aligned_cols=228  Identities=11%  Similarity=0.078  Sum_probs=153.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeec------CCeE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSE------PNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~------~~~~   84 (334)
                      +++.+.||+|.+..+|+.||||++......   ...+.+|+.+++.+ +||||        +++++++..      .+.+
T Consensus        34 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~---~~~~~~e~~~l~~l~~h~~i--------~~~~~~~~~~~~~~~~~~~  102 (326)
T 2x7f_A           34 NGTYGQVYKGRHVKTGQLAAIKVMDVTGDE---EEEIKQEINMLKKYSHHRNI--------ATYYGAFIKKNPPGMDDQL  102 (326)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEECCSST---THHHHHHHHHHHHHCCSTTB--------CCEEEEEEECC--CCCCEE
T ss_pred             cCCCEEEEEEEECCCCCeEEEEEEecCccc---HHHHHHHHHHHHhccCCCCe--------eeeeeEEeeccCccccceE
Confidence            467789999999999999999999865432   34567899999999 79999        999999986      5689


Q ss_pred             EEEEEccCCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          85 YIIGVRQSGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      |+||||++|+ +..+... ....+   ....++.++.|++.||.|||+++                |+||||||+||+++
T Consensus       103 ~lv~e~~~~~~L~~~l~~~~~~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------ivH~dlkp~NIl~~  163 (326)
T 2x7f_A          103 WLVMEFCGAGSVTDLIKNTKGNTL---KEEWIAYICREILRGLSHLHQHK----------------VIHRDIKGQNVLLT  163 (326)
T ss_dssp             EEEEECCTTEEHHHHHHHSGGGCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCSGGGEEEC
T ss_pred             EEEEEcCCCCcHHHHHHhcccCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ccccCCcHHHEEEc
Confidence            9999999997 4443332 22223   44556677889999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCCC--CCccccCcccccccccc------cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCc
Q psy6542         163 EHGHVRISDLGLACDFSKKK--PHASVESDCILHGYIKK------LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSK  230 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~------~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~  230 (334)
                      .++.+||+|||++.......  .....|++.|++||+..      .. ...+|+|+   ++|+++. +..||........
T Consensus       164 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~  242 (326)
T 2x7f_A          164 ENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAE-GAPPLCDMHPMRA  242 (326)
T ss_dssp             TTCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHH-SSCTTTTSCHHHH
T ss_pred             CCCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHh-CCCCCCCCcHHHH
Confidence            99999999999998765432  33456899999999853      22 34566666   5566555 5567655432111


Q ss_pred             ccchhcccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         231 PELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...+.............+..-...+..++..||..|++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  282 (326)
T 2x7f_A          243 LFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATE  282 (326)
T ss_dssp             HHHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             HHHhhcCccccCCccccCHHHHHHHHHHhccChhhCCCHH
Confidence            1111111111111111222334556666677888877644

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.96  E-value=5.6e-29  Score=225.92  Aligned_cols=184  Identities=12%  Similarity=0.024  Sum_probs=137.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..+|+.||||++.....    ...+.+|+++++.++|+++       +..+..++..++..++||||+
T Consensus        19 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~e~~~l~~l~~~~~-------i~~~~~~~~~~~~~~lv~e~~   87 (296)
T 4hgt_A           19 SGSFGDIYLGTDIAAGEEVAIKLECVKTK----HPQLHIESKIYKMMQGGVG-------IPTIRWCGAEGDYNVMVMELL   87 (296)
T ss_dssp             ECSSSEEEEEEETTTTEEEEEEEEEC-------CCCHHHHHHHHHHHTTSTT-------CCCEEEEEEETTEEEEEEECC
T ss_pred             CCCCeEEEEEEEcCCCceEEEEeeccccc----chHHHHHHHHHHHhcCCCC-------CCeeeeecCCCCceEEEEEcc
Confidence            46778999999999999999999775443    2356779999999999887       134445556788899999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee---CCCCCEE
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL---DEHGHVR  168 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl---~~~~~vk  168 (334)
                      .|++..+.......+   ....++.++.|++.||.|||+++                |+||||||+|||+   ++++.+|
T Consensus        88 ~~~L~~~~~~~~~~~---~~~~~~~i~~qi~~~l~~LH~~~----------------ivH~Dlkp~NIl~~~~~~~~~~k  148 (296)
T 4hgt_A           88 GPSLEDLFNFCSRKF---SLKTVLLLADQMISRIEYIHSKN----------------FIHRDVKPDNFLMGLGKKGNLVY  148 (296)
T ss_dssp             CCBHHHHHHHTTSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECCGGGTTCEE
T ss_pred             CCCHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHeeeeccCCCCeEE
Confidence            555554434322233   45566777889999999999999                9999999999999   7889999


Q ss_pred             EEecccccccCCCCC---------CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP---------HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~~---------~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+++.......         ....||+.|++||+.. ..++ .+|+|+   ++|++ .++..||.+.+
T Consensus       149 L~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l-~~g~~pf~~~~  219 (296)
T 4hgt_A          149 IIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYF-NLGSLPWQGLK  219 (296)
T ss_dssp             ECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHH-HHSSCTTSSCC
T ss_pred             EecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHH-hcCCCCCcccc
Confidence            999999987655422         3456899999999853 2344 566666   55555 55666776654

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.1e-29  Score=238.15  Aligned_cols=186  Identities=16%  Similarity=0.172  Sum_probs=142.0

Q ss_pred             CCCceEEEeceeC---CCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLK---PLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~---~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++.+.||+|.+.   .+|+.||||+++....  .......+.+|+++++.+ +||||        +++++++..++.+|
T Consensus        64 ~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i--------v~~~~~~~~~~~~~  135 (355)
T 1vzo_A           64 TGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFL--------VTLHYAFQTETKLH  135 (355)
T ss_dssp             ETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTB--------CCEEEEEEETTEEE
T ss_pred             cCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCce--------eEEEEEEeeCceEE
Confidence            4677899999884   6899999999976432  222334566799999999 69999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +..+.... ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.+
T Consensus       136 lv~e~~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~aL~~LH~~~----------------ivH~Dlkp~NIll~~~  195 (355)
T 1vzo_A          136 LILDYINGGELFTHLSQR-ERF---TEHEVQIYVGEIVLALEHLHKLG----------------IIYRDIKLENILLDSN  195 (355)
T ss_dssp             EEECCCCSCBHHHHHHHH-SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTT
T ss_pred             EEeecCCCCCHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEECCC
Confidence            999999987 43332322 233   44555667779999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCC---CCccccCccccccccccc---cC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKK---PHASVESDCILHGYIKKL---GG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~~---~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.+||+|||+++.+....   ....+||+.|++||+...   .+ ..+|+|+   ++|+++. +..||....
T Consensus       196 ~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~-g~~pf~~~~  266 (355)
T 1vzo_A          196 GHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLT-GASPFTVDG  266 (355)
T ss_dssp             SCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHH-SSCTTSCTT
T ss_pred             CcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHH-CCCCCccCC
Confidence            999999999998664332   234578999999998542   23 4566677   5566655 566776554

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.96  E-value=1.7e-29  Score=233.45  Aligned_cols=245  Identities=12%  Similarity=0.024  Sum_probs=168.8

Q ss_pred             CCCceEEEeceeCCCCCcE--EEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPI--QIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~v--AIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++.+.||+|.++.+|..+  |||.++.... ....+.+.+|+++++.+ +||||        +++++++.+.+.+|+||
T Consensus        35 ~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~-~~~~~~~~~E~~~l~~l~~hp~i--------v~~~~~~~~~~~~~lv~  105 (327)
T 1fvr_A           35 EGNFGQVLKARIKKDGLRMDAAIKRMKEYAS-KDDHRDFAGELEVLCKLGHHPNI--------INLLGACEHRGYLYLAI  105 (327)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTB--------CCEEEEEEETTEEEEEE
T ss_pred             cCCCceEEEEEEccCCcccceeeeeeccccc-hHHHHHHHHHHHHHHhccCCCch--------hhhceeeeeCCceEEEE
Confidence            4678899999999999866  9999985433 22445688899999999 89999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhhh------------hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCC
Q psy6542          89 VRQSGP-KDQISRSKI------------NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK  155 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~------------~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlK  155 (334)
                      ||++|+ +..+.....            ..........++.++.|++.||.|||+++                |+|||||
T Consensus       106 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~dlk  169 (327)
T 1fvr_A          106 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ----------------FIHRDLA  169 (327)
T ss_dssp             CCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCS
T ss_pred             ecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC----------------ccCCCCc
Confidence            999887 443333221            00112355667788889999999999999                9999999


Q ss_pred             CCceeeCCCCCEEEEecccccccCCCCC-CccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCCCCCCC
Q psy6542         156 PANILLDEHGHVRISDLGLACDFSKKKP-HASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHPESGQS  229 (334)
Q Consensus       156 p~NiLl~~~~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~  229 (334)
                      |+||+++.++.+||+|||+++....... ....+++.|++||+... . ...+|+|+   ++|+++..+..||.+.....
T Consensus       170 p~NIl~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~  249 (327)
T 1fvr_A          170 ARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE  249 (327)
T ss_dssp             GGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH
T ss_pred             cceEEEcCCCeEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH
Confidence            9999999999999999999985433322 23345788999998532 2 44566666   66666655777875543110


Q ss_pred             cccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHH
Q psy6542         230 KPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMA  308 (334)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~  308 (334)
                                               +...+...      ...+....+++.+.+  +...+...+|..|+ +.++++++.
T Consensus       250 -------------------------~~~~~~~~------~~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~ell~~L~  296 (327)
T 1fvr_A          250 -------------------------LYEKLPQG------YRLEKPLNCDDEVYD--LMRQCWREKPYERPSFAQILVSLN  296 (327)
T ss_dssp             -------------------------HHHHGGGT------CCCCCCTTBCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             -------------------------HHHHhhcC------CCCCCCCCCCHHHHH--HHHHHccCChhhCcCHHHHHHHHH
Confidence                                     00011000      000011223333444  77888889999999 888888887


Q ss_pred             HHhCCC
Q psy6542         309 RKAGKI  314 (334)
Q Consensus       309 ~~~~~~  314 (334)
                      +...+.
T Consensus       297 ~~~~~~  302 (327)
T 1fvr_A          297 RMLEER  302 (327)
T ss_dssp             HHHHSS
T ss_pred             HHHHhh
Confidence            765443

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.96  E-value=3.5e-29  Score=234.30  Aligned_cols=183  Identities=15%  Similarity=0.118  Sum_probs=142.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-----CCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-----NEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-----h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++...||+|.+..+|+.||||+++...   .....+..|+++++.+.     ||||        +++++++...+.+|+
T Consensus        45 ~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~e~~~l~~l~~~~~~h~~i--------v~~~~~~~~~~~~~l  113 (360)
T 3llt_A           45 DGTFGRVLLCQHIDNKKYYAVKVVRNIK---KYTRSAKIEADILKKIQNDDINNNNI--------VKYHGKFMYYDHMCL  113 (360)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEECSCH---HHHHHHHHHHHHHHHTCCCSTTGGGB--------CCEEEEEEETTEEEE
T ss_pred             ccCCeEEEEEEECCCCeEEEEEEeccch---hhhhhhHHHHHHHHHhcccCCCCCCe--------ecccceeeECCeeEE
Confidence            4778899999999999999999997432   23445677999999997     9999        999999999999999


Q ss_pred             EEEccCCChhH-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC--
Q psy6542          87 IGVRQSGPKDQ-ISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE--  163 (334)
Q Consensus        87 vmEy~~g~l~~-l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~--  163 (334)
                      ||||+.+++.. +.......+   ....+..++.||+.||.|||+++                |+||||||+|||++.  
T Consensus       114 v~e~~~~~L~~~~~~~~~~~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivHrDlkp~NIll~~~~  174 (360)
T 3llt_A          114 IFEPLGPSLYEIITRNNYNGF---HIEDIKLYCIEILKALNYLRKMS----------------LTHTDLKPENILLDDPY  174 (360)
T ss_dssp             EECCCCCBHHHHHHHTTTCCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEESCTT
T ss_pred             EEcCCCCCHHHHHHhcCCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeeCCCCcccEEEcccc
Confidence            99999666544 433322223   44556677789999999999999                999999999999975  


Q ss_pred             -----------------------CCCEEEEecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHH
Q psy6542         164 -----------------------HGHVRISDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKL  215 (334)
Q Consensus       164 -----------------------~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l  215 (334)
                                             ++.+||+|||+|+..... .....||+.|++||+.. .. +..+|+|+   ++|+++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  253 (360)
T 3llt_A          175 FEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY-HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELY  253 (360)
T ss_dssp             CCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC-CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHH
T ss_pred             ccccccchhcccccccccccccCCCCEEEEeccCceecCCC-CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHH
Confidence                                   788999999999865543 34567899999999843 33 44566666   555554


Q ss_pred             cCCCCCCCCCC
Q psy6542         216 FPNRLELHPES  226 (334)
Q Consensus       216 ~~~~~~~~~~~  226 (334)
                       ++..||.+.+
T Consensus       254 -~g~~pf~~~~  263 (360)
T 3llt_A          254 -TGSLLFRTHE  263 (360)
T ss_dssp             -HSSCSCCCSS
T ss_pred             -HCCCCCCCCc
Confidence             4566876654

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.96  E-value=1.8e-28  Score=220.54  Aligned_cols=185  Identities=21%  Similarity=0.147  Sum_probs=144.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||||++....... ..+.+.+|+++++.++||||        +++++++.+++..|+||||+
T Consensus        17 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   87 (276)
T 2yex_A           17 EGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKMLNHENV--------VKFYGHRREGNIQYLFLEYC   87 (276)
T ss_dssp             ECSSSEEEEEEETTTCCEEEEEEEEGGGCTT-HHHHHHHHHHHHHTCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             cCCCcEEEEEEECCCCcEEEEEEeeeccchh-hhHHHHHHHHHHHhcCCCCc--------eeeeeEEEcCCEEEEEEEec
Confidence            4677899999999999999999998554322 34567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +....... ..+   ....++.++.|++.||.|||+++                ++||||||+||+++.++.+||+
T Consensus        88 ~~~~L~~~l~~~-~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dl~p~Nil~~~~~~~kl~  147 (276)
T 2yex_A           88 SGGELFDRIEPD-IGM---PEPDAQRFFHQLMAGVVYLHGIG----------------ITHRDIKPENLLLDERDNLKIS  147 (276)
T ss_dssp             TTEEGGGGSBTT-TBC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECTTCCEEEC
T ss_pred             CCCcHHHHHhhc-cCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeccCCChHHEEEccCCCEEEe
Confidence            987 43332221 122   45556777889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC----CCccccCcccccccccccc--CC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK----PHASVESDCILHGYIKKLG--GP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~~--~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||++.......    .....|++.|++||+....  ++ .+|+|+   ++|+++. +..||.+.+
T Consensus       148 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~  212 (276)
T 2yex_A          148 DFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLA-GELPWDQPS  212 (276)
T ss_dssp             CCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHH-SSCCCSCSC
T ss_pred             eCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCc
Confidence            999998654322    2345688999999985432  23 466666   5556555 566775544

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.96  E-value=4e-29  Score=230.91  Aligned_cols=188  Identities=15%  Similarity=0.161  Sum_probs=127.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHH-HHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQE-IFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~-il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||+++......... .+..|.. +++.++||||        +++++++.+++.+|+||||
T Consensus        32 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~-~~~~e~~~~~~~~~h~ni--------v~~~~~~~~~~~~~lv~e~  102 (327)
T 3aln_A           32 RGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQK-QLLMDLDVVMRSSDCPYI--------VQFYGALFREGDCWICMEL  102 (327)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHH-HHHHHHHHHHSSCCCTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             cCCCEEEEEEEEcCCCCEEEEEEeecccCchHHH-HHHHHHHHHHHcCCCCcE--------eeeeeEEEeCCceEEEEee
Confidence            5778899999999999999999998765433333 3444554 7888999999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGPKDQISRSKIN-RYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~l~~l~~~~~~-~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ++|++..+...... .........+..++.|++.||.|||+. +                |+||||||+||+++.++.+|
T Consensus       103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~----------------ivH~dlkp~NIll~~~~~~k  166 (327)
T 3aln_A          103 MSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK----------------IIHRDIKPSNILLDRSGNIK  166 (327)
T ss_dssp             CSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHS----------------CCCSCCCGGGEEEETTTEEE
T ss_pred             cCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCC----------------EeECCCCHHHEEEcCCCCEE
Confidence            99985433332111 112224555677888999999999998 8                99999999999999999999


Q ss_pred             EEecccccccCCCCC-CccccCccccccccc-----ccc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP-HASVESDCILHGYIK-----KLG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       169 l~DFGla~~~~~~~~-~~~~~t~~~~~~~v~-----~~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |+|||+++....... ....||+.|++||+.     ... +..+|+|+   ++|+++. +..||.+.
T Consensus       167 l~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~  232 (327)
T 3aln_A          167 LCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELAT-GRFPYPKW  232 (327)
T ss_dssp             ECCCSSSCC------------------------------CCSHHHHHHHHHHHHHHHH-SCCCSSCC
T ss_pred             EccCCCceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHH-CCCCCCCc
Confidence            999999987655443 234689999999985     222 34566666   5566655 56677553

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.96  E-value=5.7e-29  Score=227.21  Aligned_cols=185  Identities=19%  Similarity=0.138  Sum_probs=140.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee--cCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS--EPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~--~~~~~~iv   87 (334)
                      +++.+.||+|.+..+++.||||+++....  .......+.+|+++++.++||||        +++++++.  +.+.+|+|
T Consensus        15 ~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~lv   86 (305)
T 2wtk_C           15 EGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNV--------IQLVDVLYNEEKQKMYMV   86 (305)
T ss_dssp             ECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTB--------CCEEEEEECC---CEEEE
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCe--------eEEEEEEEcCCCCeEEEE
Confidence            46778999999999999999999986432  12234578889999999999999        99999984  45689999


Q ss_pred             EEccCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+++++ +.+.......+   .....+.++.|++.||.|||+++                |+||||||+||+++.++.
T Consensus        87 ~e~~~~~l~~~~~~~~~~~~---~~~~~~~~~~qi~~al~~LH~~~----------------i~H~dlkp~NIl~~~~~~  147 (305)
T 2wtk_C           87 MEYCVCGMQEMLDSVPEKRF---PVCQAHGYFCQLIDGLEYLHSQG----------------IVHKDIKPGNLLLTTGGT  147 (305)
T ss_dssp             EECCSEEHHHHHHHSTTCSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECTTCC
T ss_pred             ehhccCCHHHHHHhCccccc---CHHHHHHHHHHHHHHHHHHHHCC----------------eeecCCCcccEEEcCCCc
Confidence            99999994 33332222233   44556677889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC----CCccccCcccccccccccc----CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK----PHASVESDCILHGYIKKLG----GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       167 vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~~----~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +||+|||++.......    .....|++.|++||+....    ...+|+|+   ++|+++. +..||.+
T Consensus       148 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~  215 (305)
T 2wtk_C          148 LKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITT-GLYPFEG  215 (305)
T ss_dssp             EEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHH-SSCSCCC
T ss_pred             EEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHh-CCCCCCC
Confidence            9999999998764322    2345678999999985432    33566677   5566655 5556654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.96  E-value=1.8e-29  Score=236.49  Aligned_cols=185  Identities=14%  Similarity=0.188  Sum_probs=144.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..+|+.||+|++..... ....+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        43 ~G~~g~V~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~  113 (360)
T 3eqc_A           43 AGNGGVVFKVSHKPSGLVMARKLIHLEIK-PAIRNQIIRELQVLHECNSPYI--------VGFYGAFYSDGEISICMEHM  113 (360)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEECCCC-HHHHHHHHHHHGGGGGCCCTTB--------CCEEEEEEETTEEEEEECCC
T ss_pred             CCCCeEEEEEEECCCCcEEEEEEeccccC-HHHHHHHHHHHHHHHHCCCCCE--------EEEeEEEEECCEEEEEEECC
Confidence            46778999999999999999999987543 3355678899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|+ +..+.... ..+   ....+..++.|++.||.|||+. +                |+||||||+||+++.++.+||
T Consensus       114 ~~~~L~~~l~~~-~~~---~~~~~~~i~~~i~~~l~~lh~~~~----------------i~H~dlkp~Nil~~~~~~~kl  173 (360)
T 3eqc_A          114 DGGSLDQVLKKA-GRI---PEQILGKVSIAVIKGLTYLREKHK----------------IMHRDVKPSNILVNSRGEIKL  173 (360)
T ss_dssp             TTCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHHHC----------------CCCSCCSGGGEEECTTCCEEE
T ss_pred             CCCCHHHHHHHc-CCC---CHHHHHHHHHHHHHHHHHHHHhCC----------------EEcCCccHHHEEECCCCCEEE
Confidence            987 54443322 122   4455667788999999999996 8                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||+++...........||+.|++||+.. ..++ .+|+|+   ++|+++. +..||...+
T Consensus       174 ~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~  234 (360)
T 3eqc_A          174 CDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAV-GRYPIPPPD  234 (360)
T ss_dssp             CCCCCCHHHHHHC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHH-TSCCSSCCC
T ss_pred             EECCCCcccccccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCC
Confidence            999999866555555667899999999853 3344 556666   5555554 556775543

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.96  E-value=9.5e-30  Score=255.77  Aligned_cols=236  Identities=11%  Similarity=0.063  Sum_probs=165.9

Q ss_pred             CCCceEEEec--eeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPP--SLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a--~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|  ..+.+++.||||+++....+....+.+.+|+++|+.++||||        |++++++.. +.+++|||
T Consensus       379 ~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnI--------v~l~~~~~~-~~~~lv~E  449 (635)
T 4fl3_A          379 SGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI--------VRMIGICEA-ESWMLVME  449 (635)
T ss_dssp             ECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTB--------CCEEEEEES-SSEEEEEE
T ss_pred             cCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCE--------eeEEEEEec-CCEEEEEE
Confidence            5778899999  446778899999998765555556788899999999999999        999999964 55899999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +..+.... ..+   ....++.++.||+.||.|||+++                |+||||||+|||++.++.+|
T Consensus       450 ~~~~g~L~~~l~~~-~~l---~~~~~~~i~~qi~~~L~yLH~~~----------------iiHrDLkp~NILl~~~~~~k  509 (635)
T 4fl3_A          450 MAELGPLNKYLQQN-RHV---KDKNIIELVHQVSMGMKYLEESN----------------FVHRDLAARNVLLVTQHYAK  509 (635)
T ss_dssp             CCTTEEHHHHHHHC-TTC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEEEETTEEE
T ss_pred             ccCCCCHHHHHhhC-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeCCCCChHhEEEeCCCCEE
Confidence            99998 44333321 223   44556777889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC-----CccccCccccccccccc-cCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         169 ISDLGLACDFSKKKP-----HASVESDCILHGYIKKL-GGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       169 l~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~~-~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      |+|||+|+.+.....     ....++..|++||+... .++ .+|+|+   ++|+++..+..||.+.+...         
T Consensus       510 L~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~---------  580 (635)
T 4fl3_A          510 ISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE---------  580 (635)
T ss_dssp             ECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---------
T ss_pred             EEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH---------
Confidence            999999987654432     22334678999998532 344 555555   66777766788875543211         


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                      +...+...  .+..    ....++..+.+  ++..|...+|..|+ +.++++.+..
T Consensus       581 ----------------~~~~i~~~--~~~~----~p~~~~~~l~~--li~~cl~~dP~~RPs~~~l~~~L~~  628 (635)
T 4fl3_A          581 ----------------VTAMLEKG--ERMG----CPAGCPREMYD--LMNLCWTYDVENRPGFAAVELRLRN  628 (635)
T ss_dssp             ----------------HHHHHHTT--CCCC----CCTTCCHHHHH--HHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred             ----------------HHHHHHcC--CCCC----CCCCCCHHHHH--HHHHHcCCCHhHCcCHHHHHHHHHH
Confidence                            01111000  0011    11234444555  77777888888888 7777776654

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.96  E-value=2.3e-29  Score=233.18  Aligned_cols=238  Identities=14%  Similarity=0.047  Sum_probs=158.3

Q ss_pred             CCCceEEEeceeCCCCCcE----EEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPI----QIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~v----AIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++.+.||+|.+..+|+.|    |+|.+..... ....+.+.+|+.+++.++||||        +++++++.+++ .++|
T Consensus        25 ~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~-~~~v   94 (327)
T 3lzb_A           25 SGAFGTVYKGLWIPEGEKVKIPVAIKELREATS-PKANKEILDEAYVMASVDNPHV--------CRLLGICLTST-VQLI   94 (327)
T ss_dssp             ECSSEEEEEEEECCTTCSCCEEEEEEEECCCSS-CCCHHHHHHHHHHHTTCCBTTB--------CCCCEEEESSS-EEEE
T ss_pred             eCCCeEEEEEEEcCCCceEEEEEEEEeeccccC-HHHHHHHHHHHHHHHhCCCCCe--------eEEEEEEecCC-ceEE
Confidence            5788899999999999887    5555543322 2244567889999999999999        99999998765 7889


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.++ +..........+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.
T Consensus        95 ~~~~~~g~L~~~l~~~~~~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~Dikp~NIl~~~~~~  155 (327)
T 3lzb_A           95 TQLMPFGCLLDYVREHKDNI---GSQYLLNWCVQIAKGMNYLEDRR----------------LVHRDLAARNVLVKTPQH  155 (327)
T ss_dssp             ECCCSSCBHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEEEETTE
T ss_pred             EEecCCCcHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHhhCC----------------CcCCCCCHHHEEEcCCCC
Confidence            9998887 433323222223   44556778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC----CccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcc
Q psy6542         167 VRISDLGLACDFSKKKP----HASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMD  237 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~  237 (334)
                      +||+|||+++.......    ....+|+.|++||+. ...++ .+|+|+   ++|+++..+..||.+.........+...
T Consensus       156 ~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~  235 (327)
T 3lzb_A          156 VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKG  235 (327)
T ss_dssp             EEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTT
T ss_pred             EEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcC
Confidence            99999999987644332    223457789999974 33344 455555   6677776578887654421111110000


Q ss_pred             cccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         238 QIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                      .                               ..+..+..++.+..  +...|+..+|..|+ +.++++.+.+..
T Consensus       236 ~-------------------------------~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~ell~~L~~~~  277 (327)
T 3lzb_A          236 E-------------------------------RLPQPPICTIDVYM--IMRKCWMIDADSRPKFRELIIEFSKMA  277 (327)
T ss_dssp             C-------------------------------CCCCCTTBCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             C-------------------------------CCCCCccCCHHHHH--HHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            0                               00111223333444  77778888888888 777777776643

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.96  E-value=3.7e-30  Score=241.14  Aligned_cols=186  Identities=17%  Similarity=0.170  Sum_probs=133.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---------chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee---
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---------ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS---   79 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---------~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~---   79 (334)
                      +++.+.||+|.+.. |+.||||.+.....         +....+.+.+|+++++.++||||        +++++++.   
T Consensus        32 ~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~  102 (362)
T 3pg1_A           32 SGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI--------LGLRDIFVHFE  102 (362)
T ss_dssp             EETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB--------CCCSEEEEECC
T ss_pred             cCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc--------cceeeeEEecc
Confidence            47788999999876 99999999976433         22234678899999999999999        99999884   


Q ss_pred             --cCCeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCC
Q psy6542          80 --EPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPA  157 (334)
Q Consensus        80 --~~~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~  157 (334)
                        ....+|+||||++|++..........+   ....+..++.|++.||.|||+++                |+||||||+
T Consensus       103 ~~~~~~~~lv~e~~~~~l~~~~~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~Dlkp~  163 (362)
T 3pg1_A          103 EPAMHKLYLVTELMRTDLAQVIHDQRIVI---SPQHIQYFMYHILLGLHVLHEAG----------------VVHRDLHPG  163 (362)
T ss_dssp             TTTCCEEEEEEECCSEEHHHHHHCTTSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGG
T ss_pred             CCCcceEEEEEccCCCCHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHHCc----------------CEecCCChH
Confidence              334789999999988433333322223   44556677889999999999999                999999999


Q ss_pred             ceeeCCCCCEEEEecccccccCCCCC-CccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         158 NILLDEHGHVRISDLGLACDFSKKKP-HASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       158 NiLl~~~~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ||+++.++.+||+|||+++....... ....||+.|++||+..  .. +..+|+|+   ++|+++ ++..||.+.+
T Consensus       164 NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~-~g~~pf~~~~  238 (362)
T 3pg1_A          164 NILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMF-NRKALFRGST  238 (362)
T ss_dssp             GEEECTTCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHH-HSSCSCCCSS
T ss_pred             HEEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHH-hCCCCCCCCC
Confidence            99999999999999999986544433 3456789999999743  23 44566666   555554 4566776654

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.96  E-value=6.9e-29  Score=224.24  Aligned_cols=185  Identities=18%  Similarity=0.157  Sum_probs=142.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcch----HHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHES----RVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~----~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++.+.||+|.++.+|+.||||+++......    ...+.+.+|+++++.++||||        +++++++.+++.+|+|
T Consensus        15 ~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv   86 (283)
T 3bhy_A           15 SGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNI--------ITLHDIFENKTDVVLI   86 (283)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEE
T ss_pred             ccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCe--------eehhheecCCCeEEEE
Confidence            4678899999999999999999998765421    134568889999999999999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-  165 (334)
                      |||++|+ +..+.... ..+   ....++.++.|++.||.|||+++                ++||||||+||+++.++ 
T Consensus        87 ~e~~~~~~L~~~l~~~-~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dl~p~Nil~~~~~~  146 (283)
T 3bhy_A           87 LELVSGGELFDFLAEK-ESL---TEDEATQFLKQILDGVHYLHSKR----------------IAHFDLKPENIMLLDKNV  146 (283)
T ss_dssp             EECCCSCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEESCSSS
T ss_pred             EeecCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccCCCCChHHEEEecCCC
Confidence            9999877 44333321 123   45556777889999999999999                99999999999999887 


Q ss_pred             ---CEEEEecccccccCCCCC-CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         166 ---HVRISDLGLACDFSKKKP-HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       166 ---~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                         .+||+|||++........ ....|++.|++||+.. .. ...+|+|+   ++|+++. +..||.+.
T Consensus       147 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~  214 (283)
T 3bhy_A          147 PNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS-GASPFLGE  214 (283)
T ss_dssp             SSCCEEECCCTTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCTTCCS
T ss_pred             CCCceEEEecccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHH-CCCCCCCc
Confidence               799999999987655432 3456899999999853 22 44566666   5566655 55576554

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.96  E-value=1.1e-28  Score=224.65  Aligned_cols=185  Identities=18%  Similarity=0.193  Sum_probs=145.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-------chHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-------ESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-------~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      +++.+.||+|.++.+|+.||||++.....       .....+.+.+|+++++++. ||||        +++++++.+++.
T Consensus        27 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i--------~~~~~~~~~~~~   98 (298)
T 1phk_A           27 RGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNI--------IQLKDTYETNTF   98 (298)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTB--------CCEEEEEECSSE
T ss_pred             CCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCE--------eeeeeeeccCCe
Confidence            46778999999999999999999987642       1233456788999999996 9999        999999999999


Q ss_pred             EEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          84 HYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      +|+||||++|+ +..+.... ..+   ....++.++.|++.||.|||+++                ++||||||+||+++
T Consensus        99 ~~lv~e~~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dl~p~Nil~~  158 (298)
T 1phk_A           99 FFLVFDLMKKGELFDYLTEK-VTL---SEKETRKIMRALLEVICALHKLN----------------IVHRDLKPENILLD  158 (298)
T ss_dssp             EEEEEECCTTCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEC
T ss_pred             EEEEEeccCCCcHHHHHhcc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCcceEEEc
Confidence            99999999987 44333322 122   44556677889999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCCC-CCccccCcccccccccc-------cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         163 EHGHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-------LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-------~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      .++.+||+|||++....... .....|++.|++||+..       .. ...+|+|+   ++|+++. +..||.+.
T Consensus       159 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~  232 (298)
T 1phk_A          159 DDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLA-GSPPFWHR  232 (298)
T ss_dssp             TTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHH-SSCSSCCS
T ss_pred             CCCcEEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHH-CCCCCcCc
Confidence            99999999999998765543 34456899999999842       22 34566666   5666655 55566443

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.96  E-value=7.2e-29  Score=229.12  Aligned_cols=237  Identities=13%  Similarity=0.105  Sum_probs=151.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEee--------cCC
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTS--------EPN   82 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~--------~~~   82 (334)
                      +++...||+|.+..+|+.||||++.....  ...+.+.+|+.+++.+. ||||        +++++++.        ...
T Consensus        38 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~~h~~i--------v~~~~~~~~~~~~~~~~~~  107 (337)
T 3ll6_A           38 EGGFAFVYEAQDVGSGREYALKRLLSNEE--EKNRAIIQEVCFMKKLSGHPNI--------VQFCSAASIGKEESDTGQA  107 (337)
T ss_dssp             CCSSEEEEEEEETTTCCEEEEEEEEESSH--HHHHHHHHHHHHHHHHTTSTTB--------CCEEEEEEECTTTSTTSSE
T ss_pred             cCCceEEEEEEECCCCcEEEEEEecCCch--HHHHHHHHHHHHHHHhccCCCh--------hhccccccccccccccCCc
Confidence            57788999999999999999999865432  34456788999999996 9999        99999984        345


Q ss_pred             eEEEEEEccCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          83 SHYIIGVRQSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        83 ~~~ivmEy~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      .+++||||++|++ +++.....  ........++.++.||+.||.|||+.+              ++|+||||||+|||+
T Consensus       108 ~~~lv~e~~~g~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~--------------~~ivH~Dikp~NIl~  171 (337)
T 3ll6_A          108 EFLLLTELCKGQLVEFLKKMES--RGPLSCDTVLKIFYQTCRAVQHMHRQK--------------PPIIHRDLKVENLLL  171 (337)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHHHHHHTSS--------------SCCBCCCCCGGGCEE
T ss_pred             eEEEEEEecCCCHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhCC--------------CCEEEccCCcccEEE
Confidence            6899999999884 33432111  112355666778889999999999986              349999999999999


Q ss_pred             CCCCCEEEEecccccccCCCCC--------------CccccCcccccccccc----ccCC-cceeeh---hHHHHHcCCC
Q psy6542         162 DEHGHVRISDLGLACDFSKKKP--------------HASVESDCILHGYIKK----LGGP-FVSAWQ---TRYAKLFPNR  219 (334)
Q Consensus       162 ~~~~~vkl~DFGla~~~~~~~~--------------~~~~~t~~~~~~~v~~----~~~~-~~~~w~---~~~~~l~~~~  219 (334)
                      +.++.+||+|||+++.......              ....||+.|++||+..    ..++ .+|+|+   ++|+++. +.
T Consensus       172 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~-g~  250 (337)
T 3ll6_A          172 SNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCF-RQ  250 (337)
T ss_dssp             CTTSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHH-SS
T ss_pred             CCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHh-CC
Confidence            9999999999999987654322              1345789999999852    2233 556666   5566554 55


Q ss_pred             CCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch
Q psy6542         220 LELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC  299 (334)
Q Consensus       220 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~  299 (334)
                      .||......   ..+                     ....          ..+.....+..+..  +...++..+|..|+
T Consensus       251 ~p~~~~~~~---~~~---------------------~~~~----------~~~~~~~~~~~~~~--li~~~l~~~p~~Rp  294 (337)
T 3ll6_A          251 HPFEDGAKL---RIV---------------------NGKY----------SIPPHDTQYTVFHS--LIRAMLQVNPEERL  294 (337)
T ss_dssp             CCC------------------------------------C----------CCCTTCCSSGGGHH--HHHHHSCSSGGGSC
T ss_pred             CCCcchhHH---Hhh---------------------cCcc----------cCCcccccchHHHH--HHHHHccCChhhCc
Confidence            565432211   000                     0000          00011222233344  77788888888888


Q ss_pred             -hHHHHHHHHHHh
Q psy6542         300 -SQELLGSMARKA  311 (334)
Q Consensus       300 -~~~lL~~l~~~~  311 (334)
                       +.++++++....
T Consensus       295 s~~e~l~~l~~~~  307 (337)
T 3ll6_A          295 SIAEVVHQLQEIA  307 (337)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence             778887776643

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.96  E-value=8.5e-29  Score=224.92  Aligned_cols=184  Identities=12%  Similarity=0.018  Sum_probs=139.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+..+|+.||||++......    ..+.+|+.+++.++|+++       +..+..++..++..|+||||+
T Consensus        19 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~e~~~l~~l~~~~~-------i~~~~~~~~~~~~~~lv~e~~   87 (296)
T 3uzp_A           19 SGSFGDIYLGTDIAAGEEVAIKLECVKTKH----PQLHIESKIYKMMQGGVG-------IPTIRWCGAEGDYNVMVMELL   87 (296)
T ss_dssp             EETTEEEEEEEETTTTEEEEEEEEESCSSC----CHHHHHHHHHHHHTTSTT-------CCCEEEEEEETTEEEEEEECC
T ss_pred             cCCCeEEEEEEEcCCCcEEEEEEecCCcch----hHHHHHHHHHHHhhcCCC-------CCccccccCCCCceEEEEEec
Confidence            467789999999999999999999865442    346779999999999986       134445556788899999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC---CCCCEE
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD---EHGHVR  168 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~---~~~~vk  168 (334)
                      .+++..+.......+   ....++.++.|++.||.|||+++                |+||||||+||+++   +++.+|
T Consensus        88 ~~~L~~~~~~~~~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------ivH~dlkp~NIl~~~~~~~~~~k  148 (296)
T 3uzp_A           88 GPSLEDLFNFCSRKF---SLKTVLLLADQMISRIEYIHSKN----------------FIHRDVKPDNFLMGLGKKGNLVY  148 (296)
T ss_dssp             CCBHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEECCGGGTTCEE
T ss_pred             CCCHHHHHHhhccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeeCCCCHHHeEEecCCCCCeEE
Confidence            555544433222233   45566777889999999999999                99999999999994   788999


Q ss_pred             EEecccccccCCCCC---------CccccCccccccccccc-cC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP---------HASVESDCILHGYIKKL-GG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~~---------~~~~~t~~~~~~~v~~~-~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+++.......         ....||+.|++||+... .+ ..+|+|+   ++|+++. +..||.+.+
T Consensus       149 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~  219 (296)
T 3uzp_A          149 IIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNL-GSLPWQGLK  219 (296)
T ss_dssp             ECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCTTSSCC
T ss_pred             EeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHh-CCCCCCCcC
Confidence            999999987655432         34578999999998532 33 4566666   5566555 666776544

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.96  E-value=9e-29  Score=226.25  Aligned_cols=187  Identities=14%  Similarity=0.035  Sum_probs=144.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|..  +++.||||.+.....  .....+.+.+|+++++.++||||        +++++++.+++..|+|||
T Consensus        41 ~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e  110 (307)
T 2nru_A           41 EGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENL--------VELLGFSSDGDDLCLVYV  110 (307)
T ss_dssp             ECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCEEEEE
T ss_pred             cCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCe--------EEEEEEEecCCceEEEEE
Confidence            567789999986  588999999986543  33456678899999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +..+..... ..........+.++.|++.||.|||+++                |+||||||+||+++.++.+|
T Consensus       111 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~----------------i~H~dlkp~Nili~~~~~~k  173 (307)
T 2nru_A          111 YMPNGSLLDRLSCLD-GTPPLSWHMRCKIAQGAANGINFLHENH----------------HIHRDIKSANILLDEAFTAK  173 (307)
T ss_dssp             CCTTCBHHHHHHTGG-GCCCCCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEECTTCCEE
T ss_pred             ecCCCcHHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHHhcCC----------------eecCCCCHHHEEEcCCCcEE
Confidence            99887 433322211 1112345556777889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC----CCccccCcccccccccccc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK----PHASVESDCILHGYIKKLG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+++......    .....|++.|++||+.... +..+|+|+   ++|+++. +..||....
T Consensus       174 l~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~~  238 (307)
T 2nru_A          174 ISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIIT-GLPAVDEHR  238 (307)
T ss_dssp             ECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHH-CCCSBCTTB
T ss_pred             EeecccccccccccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHH-CCCCcccCc
Confidence            99999998665432    2334689999999985444 45566666   5566655 566765544

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.96  E-value=5.6e-29  Score=229.55  Aligned_cols=185  Identities=18%  Similarity=0.157  Sum_probs=137.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc------chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH------ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~------~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++.+.||+|.++.+|+.||||++.....      .......+.+|+++++.++||||        +++++++..++ +|
T Consensus        20 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~-~~   90 (322)
T 2ycf_A           20 SGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI--------IKIKNFFDAED-YY   90 (322)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTB--------CCEEEEEESSS-EE
T ss_pred             cCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCC--------ceEeeEEcCCc-eE
Confidence            57788999999999999999999986532      22233467889999999999999        99999997665 89


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +....... ..+   ....++.++.||+.||.|||+++                |+||||||+|||++.+
T Consensus        91 lv~e~~~~~~L~~~~~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~dlkp~NIl~~~~  150 (322)
T 2ycf_A           91 IVLELMEGGELFDKVVGN-KRL---KEATCKLYFYQMLLAVQYLHENG----------------IIHRDLKPENVLLSSQ  150 (322)
T ss_dssp             EEEECCTTEETHHHHSTT-CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEESSS
T ss_pred             EEEecCCCCcHHHHHhcc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCCHHHEEEecC
Confidence            999999987 43322221 223   44556677789999999999999                9999999999999876


Q ss_pred             CC---EEEEecccccccCCCCC-CccccCccccccccc----cccC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 GH---VRISDLGLACDFSKKKP-HASVESDCILHGYIK----KLGG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ~~---vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~----~~~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.   +||+|||+++....... ....||+.|++||+.    ...+ ..+|+|+   ++|+++ ++..||....
T Consensus       151 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~-~g~~pf~~~~  223 (322)
T 2ycf_A          151 EEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICL-SGYPPFSEHR  223 (322)
T ss_dssp             SSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHH-HSSCSSCSTT
T ss_pred             CCCCeEEEccCccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHH-hCCCCCcccc
Confidence            65   99999999987765432 334679999999984    2233 4566666   555555 4566776544

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.96  E-value=4.2e-29  Score=233.48  Aligned_cols=187  Identities=17%  Similarity=0.151  Sum_probs=137.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC-------eE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN-------SH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~-------~~   84 (334)
                      +++.+.||+|.++.+|+.||||++.....   ......+|++.++.++||||        +++++++...+       .+
T Consensus        33 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~~l~~l~h~ni--------v~~~~~~~~~~~~~~~~~~~  101 (360)
T 3e3p_A           33 QGTFGTVQLGKEKSTGMSVAIKKVIQDPR---FRNRELQIMQDLAVLHHPNI--------VQLQSYFYTLGERDRRDIYL  101 (360)
T ss_dssp             ------CEEEEETTTCCEEEEEEEECCTT---CCCHHHHHHHHHHHHCCTTB--------CCEEEEEEEECSSCTTCEEE
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEecCcc---ccHHHHHHHHHHHhcCCCCc--------ccHHHhhhccccccccceeE
Confidence            57788999999999999999999976543   23345568888999999999        99999986533       28


Q ss_pred             EEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh--cCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          85 YIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCH--SALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        85 ~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH--~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      |+||||++|++..................+..++.|++.||.|||  +++                |+||||||+|||++
T Consensus       102 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~----------------ivH~Dlkp~NIll~  165 (360)
T 3e3p_A          102 NVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN----------------VCHRDIKPHNVLVN  165 (360)
T ss_dssp             EEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTC----------------CBCSCCCGGGEEEE
T ss_pred             EEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCC----------------eecCcCCHHHEEEe
Confidence            999999999954333332222223345556677889999999999  888                99999999999999


Q ss_pred             C-CCCEEEEecccccccCCCCC-CccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         163 E-HGHVRISDLGLACDFSKKKP-HASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       163 ~-~~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      . ++.+||+|||+++....... ....||+.|++||+..  . ....+|+|+   ++|++++ +..||.+.+
T Consensus       166 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~-g~~pf~~~~  236 (360)
T 3e3p_A          166 EADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMML-GEPIFRGDN  236 (360)
T ss_dssp             TTTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             CCCCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHh-CCCCcCCCC
Confidence            7 89999999999997765543 3457899999999852  2 244566666   5566655 566776654

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.96  E-value=9.6e-29  Score=234.93  Aligned_cols=183  Identities=16%  Similarity=0.076  Sum_probs=136.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC------eEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN------SHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~------~~~   85 (334)
                      +++.+.||+|.+..+++ ||||.+.....      ...+|+++++.++||||        +++++++...+      .+|
T Consensus        50 ~G~~g~V~~a~~~~~~~-~aikk~~~~~~------~~~~E~~il~~l~h~ni--------v~l~~~~~~~~~~~~~~~~~  114 (394)
T 4e7w_A           50 NGSFGVVFQAKLVESDE-VAIKKVLQDKR------FKNRELQIMRIVKHPNV--------VDLKAFFYSNGDKKDEVFLN  114 (394)
T ss_dssp             EETTEEEEEEEETTTEE-EEEEEEECCTT------SCCHHHHHHHTCCCTTB--------CCEEEEEEEESSSSSCEEEE
T ss_pred             eCCCeEEEEEEECCCCe-EEEEEEecCcc------hHHHHHHHHHhCCCCCc--------ceEEEEEEecCCCCCceEEE
Confidence            46778999999998776 88888875432      12359999999999999        99999986433      389


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC-CC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD-EH  164 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~-~~  164 (334)
                      +||||+++++..................+..++.||+.||.|||+++                |+||||||+|||++ .+
T Consensus       115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~----------------ivHrDlkp~Nill~~~~  178 (394)
T 4e7w_A          115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG----------------ICHRDIKPQNLLLDPPS  178 (394)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEETTT
T ss_pred             EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC----------------ccCCCCCHHHEEEcCCC
Confidence            99999999843322221111122244556677889999999999999                99999999999998 78


Q ss_pred             CCEEEEecccccccCCCC-CCccccCcccccccccc--ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK--LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~--~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.+||+|||+|+...... .....+|+.|++||+..  ..++ .+|+|+   ++|+++ ++.+||.+.+
T Consensus       179 ~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell-~g~~pf~~~~  246 (394)
T 4e7w_A          179 GVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELM-QGQPLFPGES  246 (394)
T ss_dssp             TEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHH-HSSCSSCCSS
T ss_pred             CcEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHH-hCCCCCCCCC
Confidence            999999999998765444 34567899999999852  2344 555566   555554 5667887765

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.96  E-value=3.2e-29  Score=225.07  Aligned_cols=237  Identities=15%  Similarity=0.131  Sum_probs=154.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc--hHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE--SRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~--~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++...||+|.+.  |+.||||+++.....  ....+.+.+|+++++.++||||        +++++++.+++.+|+|||
T Consensus        17 ~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e   86 (271)
T 3dtc_A           17 IGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNI--------IALRGVCLKEPNLCLVME   86 (271)
T ss_dssp             EETTEEEEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTB--------CCEEEEECCC--CEEEEE
T ss_pred             cCCCeEEEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCE--------eeEEEEEecCCceEEEEE
Confidence            4678899999875  889999999865442  2334578889999999999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-----
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-----  163 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-----  163 (334)
                      |++|+ ++.+....  .+   ....++.++.|++.||.|||+++..             +|+||||||+||+++.     
T Consensus        87 ~~~~~~L~~~~~~~--~~---~~~~~~~i~~~l~~~l~~lH~~~~~-------------~i~H~dikp~Nil~~~~~~~~  148 (271)
T 3dtc_A           87 FARGGPLNRVLSGK--RI---PPDILVNWAVQIARGMNYLHDEAIV-------------PIIHRDLKSSNILILQKVENG  148 (271)
T ss_dssp             CCTTEEHHHHHTSS--CC---CHHHHHHHHHHHHHHHHHHHHSSSS-------------CCCCSCCSGGGEEESSCCSSS
T ss_pred             cCCCCCHHHHhhcC--CC---CHHHHHHHHHHHHHHHHHHHhCCCC-------------ceeecCCchHHEEEecccccc
Confidence            99988 54443321  23   4555677888999999999998721             2789999999999986     


Q ss_pred             ---CCCEEEEecccccccCCCCCCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchh
Q psy6542         164 ---HGHVRISDLGLACDFSKKKPHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIF  235 (334)
Q Consensus       164 ---~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~  235 (334)
                         ++.+||+|||+++...........|++.|++||+.. ..++ .+|+|+   ++|+++. +..||.+.+..       
T Consensus       149 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~-------  220 (271)
T 3dtc_A          149 DLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLT-GEVPFRGIDGL-------  220 (271)
T ss_dssp             CCSSCCEEECCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHH-CCCTTTTSCHH-------
T ss_pred             cccCcceEEccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHH-------
Confidence               678999999999977766666677899999999843 2334 566666   5566655 55666443210       


Q ss_pred             cccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         236 MDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                       ..........      ...+.....++.+.+  +...|...+|..|+ +.++++++.+
T Consensus       221 -----------------~~~~~~~~~~------~~~~~~~~~~~~~~~--li~~~l~~~p~~Rps~~e~l~~L~~  270 (271)
T 3dtc_A          221 -----------------AVAYGVAMNK------LALPIPSTCPEPFAK--LMEDCWNPDPHSRPSFTNILDQLTT  270 (271)
T ss_dssp             -----------------HHHHHHHTSC------CCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred             -----------------HHHHhhhcCC------CCCCCCcccCHHHHH--HHHHHhcCCcccCcCHHHHHHHHhc
Confidence                             0000000000      000111233344444  77888888999999 8888888753

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.4e-28  Score=223.68  Aligned_cols=241  Identities=13%  Similarity=0.000  Sum_probs=169.2

Q ss_pred             CCCceEEEeceeCCCCC---cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeE-EEE
Q psy6542          12 RVSKWRVKPPSLKPLGF---PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSH-YII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~---~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~-~iv   87 (334)
                      +++.+.||+|.+..++.   .||+|.+..... ....+.+.+|+++++.++||||        +++++++.+.+.. ++|
T Consensus        31 ~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           31 KGHFGVVYHGEYIDQAQNRIQCAIKSLSRITE-MQQVEAFLREGLLMRGLNHPNV--------LALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EETTEEEEEEEEECSSSCEEEEEEEEETTCCS-HHHHHHHHHHHHHHHTCCCTTB--------CCCCEEECCSSSCCEEE
T ss_pred             cCCCceEEEEEEecCCCceeeeeeeecccccc-HHHHHHHHHHHHHHHhCCCCCe--------eeEEEEEecCCCCcEEE
Confidence            57888999999766555   799999986443 3345578889999999999999        9999999866554 999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.|+ +..+.......+   ....++.++.|++.||.|||+++                ++||||||+||+++.++.
T Consensus       102 ~e~~~~~~L~~~~~~~~~~~---~~~~~~~i~~qi~~~l~~LH~~~----------------i~H~dikp~Nili~~~~~  162 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSPQRNP---TVKDLISFGLQVARGMEYLAEQK----------------FVHRDLAARNCMLDESFT  162 (298)
T ss_dssp             ECCCTTCBHHHHHHCTTCCC---BHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEECTTCC
T ss_pred             EecccCCCHHHHHhccccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCcceEEEcCCCc
Confidence            9999877 444333322223   44556777889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCC------CCCccccCccccccccccc-cCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchh
Q psy6542         167 VRISDLGLACDFSKK------KPHASVESDCILHGYIKKL-GGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIF  235 (334)
Q Consensus       167 vkl~DFGla~~~~~~------~~~~~~~t~~~~~~~v~~~-~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~  235 (334)
                      +||+|||+++.....      ......+++.|++||+... .++ .+|+|+   ++|++++++.+|+...+......   
T Consensus       163 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~---  239 (298)
T 3pls_A          163 VKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTH---  239 (298)
T ss_dssp             EEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHH---
T ss_pred             EEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHH---
Confidence            999999999865432      2233456788999998532 334 556666   77888787777664433111000   


Q ss_pred             cccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHhCC
Q psy6542         236 MDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKAGK  313 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~~~  313 (334)
                                        .+....          ..+.....+..+.+  +...+...+|..|+ +.++++.+.+....
T Consensus       240 ------------------~~~~~~----------~~~~~~~~~~~l~~--li~~~l~~~p~~Rps~~~ll~~l~~~~~~  288 (298)
T 3pls_A          240 ------------------FLAQGR----------RLPQPEYCPDSLYQ--VMQQCWEADPAVRPTFRVLVGEVEQIVSA  288 (298)
T ss_dssp             ------------------HHHTTC----------CCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ------------------HhhcCC----------CCCCCccchHHHHH--HHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence                              000000          00111223333444  77888888999999 88888877765443

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.96  E-value=3.1e-29  Score=227.82  Aligned_cols=239  Identities=15%  Similarity=0.093  Sum_probs=158.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+..   .||||+++.........+.+.+|+++++.++||||        ++++++. ..+.+++||||+
T Consensus        34 ~G~~g~Vy~~~~~~---~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~-~~~~~~lv~e~~  101 (289)
T 3og7_A           34 SGSFGTVYKGKWHG---DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI--------LLFMGYS-TAPQLAIVTQWC  101 (289)
T ss_dssp             ECSSEEEEEEESSS---EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTB--------CCEEEEE-CSSSCEEEEECC
T ss_pred             CCCCeEEEEEEEcC---ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcE--------EEEEeec-cCCccEEEEEec
Confidence            57788999998655   59999998777666666788999999999999999        9999965 556789999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +..........+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.+||+
T Consensus       102 ~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~~L~~lH~~~----------------i~H~Dlkp~Nil~~~~~~~kl~  162 (289)
T 3og7_A          102 EGSSLYHHLHASETKF---EMKKLIDIARQTARGMDYLHAKS----------------IIHRDLKSNNIFLHEDNTVKIG  162 (289)
T ss_dssp             CEEEHHHHHTTC---C---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEEETTTEEEEC
T ss_pred             CCCcHHHHHhhccCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccccCccceEEECCCCCEEEc
Confidence            988 433322222222   45556778889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC----CCccccCcccccccccc----ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         171 DLGLACDFSKKK----PHASVESDCILHGYIKK----LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       171 DFGla~~~~~~~----~~~~~~t~~~~~~~v~~----~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      |||+++......    .....||+.|++||+..    ..++ .+|+|+   ++|+++. +..||......   +.+    
T Consensus       163 Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~---~~~----  234 (289)
T 3og7_A          163 DFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNR---DQI----  234 (289)
T ss_dssp             CCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHH-SSCTTSSCCCH---HHH----
T ss_pred             cceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHH-CCCCccccchH---HHH----
Confidence            999998654322    23356899999999853    2233 566666   5666655 56676443211   000    


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCCcc-cCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVS-QIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                                   ...+....       ...... ....+++.+..  +...+...+|..|+ +.++++.+.+..
T Consensus       235 -------------~~~~~~~~-------~~~~~~~~~~~~~~~l~~--li~~~l~~~p~~Rps~~ell~~L~~l~  287 (289)
T 3og7_A          235 -------------IEMVGRGS-------LSPDLSKVRSNCPKRMKR--LMAECLKKKRDERPSFPRILAEIEELA  287 (289)
T ss_dssp             -------------HHHHHHTS-------CCCCTTSSCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             -------------HHHhcccc-------cCcchhhccccCCHHHHH--HHHHHccCChhhCCCHHHHHHHHHHHh
Confidence                         00010000       000000 11233344444  77888889999999 888888887643

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.96  E-value=2.2e-29  Score=252.32  Aligned_cols=186  Identities=13%  Similarity=0.060  Sum_probs=139.5

Q ss_pred             CCCceEEEeceeC--CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLK--PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~--~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|..+  .++..||||+++...... ..+.+.+|+++|+.++||||        |++++++.+ +.+|+|||
T Consensus       346 ~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~-~~~~~~~E~~il~~l~hpni--------v~l~~~~~~-~~~~lv~E  415 (613)
T 2ozo_A          346 CGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA-DTEEMMREAQIMHQLDNPYI--------VRLIGVCQA-EALMLVME  415 (613)
T ss_dssp             ECSSSEEEEEEEECSSCEEEEEEEECCCCCSST-THHHHHHHHHHHTTCCCTTB--------CCEEEEEES-SSEEEEEE
T ss_pred             cCCCcEEEEEEEecCCCcEEEEEEEcCCCCChH-HHHHHHHHHHHHHhCCCCCE--------eeEEEEecc-CCeEEEEE
Confidence            5777899999775  456779999998754322 34568889999999999999        999999976 56999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |+.|+ +..+.......+   ....++.++.||+.||.|||+++                |+||||||+|||++.++.+|
T Consensus       416 ~~~~g~L~~~l~~~~~~l---~~~~~~~i~~qi~~~L~~LH~~~----------------iiHrDlkp~NILl~~~~~vk  476 (613)
T 2ozo_A          416 MAGGGPLHKFLVGKREEI---PVSNVAELLHQVSMGMKYLEEKN----------------FVHRNLAARNVLLVNRHYAK  476 (613)
T ss_dssp             CCTTCBHHHHHTTCTTTS---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEEEETTEEE
T ss_pred             eCCCCcHHHHHhhccCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EEcCcCCHHHEEEcCCCcEE
Confidence            99998 544333322223   45556777889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC-----CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP-----HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+++.......     ....++..|++||+.. ..++ .+|+|+   ++|+++..+..||.+.+
T Consensus       477 L~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~  544 (613)
T 2ozo_A          477 ISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK  544 (613)
T ss_dssp             ECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             EeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence            999999987654321     1223457899999853 3344 455555   67777766788876543

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.96  E-value=4e-28  Score=219.01  Aligned_cols=230  Identities=15%  Similarity=0.035  Sum_probs=163.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-----------
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-----------   80 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-----------   80 (334)
                      +++.+.||+|.+..+|+.||||.++...      ..+.+|+++++.++||||        +++++++..           
T Consensus        21 ~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~~~~~   86 (284)
T 2a19_B           21 SGGFGQVFKAKHRIDGKTYVIKRVKYNN------EKAEREVKALAKLDHVNI--------VHYNGCWDGFDYDPETSSKN   86 (284)
T ss_dssp             CSSSCCEEEEEETTTCCEEEEEEEECCS------GGGHHHHHHHHHCCCTTB--------CCEEEEEEEEEEC-------
T ss_pred             cCCceEEEEEEEcCCCeEEEEEEecccc------HHHHHHHHHHHhCCCCCE--------EEEeeeEeccccCccccccc
Confidence            4677899999999999999999998643      245579999999999999        999988754           


Q ss_pred             -----CCeEEEEEEccCCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeC
Q psy6542          81 -----PNSHYIIGVRQSGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRD  153 (334)
Q Consensus        81 -----~~~~~ivmEy~~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrD  153 (334)
                           ...+|+||||++|+ +..+... ....+   .....+.++.|++.||.|||+++                |+|||
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------i~H~d  147 (284)
T 2a19_B           87 SSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKL---DKVLALELFEQITKGVDYIHSKK----------------LINRD  147 (284)
T ss_dssp             --CCEEEEEEEEECCCCSCBHHHHHHHGGGSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSC
T ss_pred             ccccCcceEEEEEeccCCCCHHHHHhhccCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeecc
Confidence                 44589999999987 4443332 22223   44556777889999999999999                99999


Q ss_pred             CCCCceeeCCCCCEEEEecccccccCCCC-CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         154 LKPANILLDEHGHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       154 lKp~NiLl~~~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      |||+||++++++.+||+|||++....... .....|++.|++||+.. .. ...+|+|+   ++|+++.+.. |+...  
T Consensus       148 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~-~~~~~--  224 (284)
T 2a19_B          148 LKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCD-TAFET--  224 (284)
T ss_dssp             CSGGGEEEEETTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCS-SHHHH--
T ss_pred             CCHHHEEEcCCCCEEECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCC-cchhH--
Confidence            99999999999999999999998776543 33456899999999843 22 44566666   6666665433 21100  


Q ss_pred             CCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHH
Q psy6542         228 QSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGS  306 (334)
Q Consensus       228 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~  306 (334)
                                               ......+...       .  .....+..+.+  +...+...+|..|+ +.+++++
T Consensus       225 -------------------------~~~~~~~~~~-------~--~~~~~~~~~~~--li~~~l~~dp~~Rps~~e~l~~  268 (284)
T 2a19_B          225 -------------------------SKFFTDLRDG-------I--ISDIFDKKEKT--LLQKLLSKKPEDRPNTSEILRT  268 (284)
T ss_dssp             -------------------------HHHHHHHHTT-------C--CCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------------------------HHHHHHhhcc-------c--ccccCCHHHHH--HHHHHccCChhhCcCHHHHHHH
Confidence                                     0000011000       0  00112233333  78888889999999 8888888


Q ss_pred             HHHHhCC
Q psy6542         307 MARKAGK  313 (334)
Q Consensus       307 l~~~~~~  313 (334)
                      +......
T Consensus       269 l~~~~~~  275 (284)
T 2a19_B          269 LTVWKKS  275 (284)
T ss_dssp             HHHHTC-
T ss_pred             HHHHhhC
Confidence            8765443

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.96  E-value=6e-29  Score=224.74  Aligned_cols=237  Identities=11%  Similarity=0.021  Sum_probs=162.1

Q ss_pred             CCCceEEEeceeCC---CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKP---LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~---~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +++.+.||+|.+..   ++..||||.+..... ....+.+.+|+++++.++||||        +++++++.+ +..|+||
T Consensus        22 ~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~-~~~~~v~   91 (281)
T 3cc6_A           22 EGFFGEVYEGVYTNHKGEKINVAVKTCKKDCT-LDNKEKFMSEAVIMKNLDHPHI--------VKLIGIIEE-EPTWIIM   91 (281)
T ss_dssp             ECSSSEEEEEEEECTTCCEEEEEEEECCTTSC-HHHHHHHHHHHHHHHHHCCTTB--------CCEEEEECS-SSCEEEE
T ss_pred             ecCCeeEEEeEEcCCCCCcceEEEEecccccC-chHHHHHHHHHHHHHhCCCCCc--------ceEEEEEcC-CCCEEEE
Confidence            46778999998653   455699999986643 2344678899999999999999        999999865 4568999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||+.|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+||+++.++.+
T Consensus        92 e~~~~~~L~~~l~~~~~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dlkp~Nil~~~~~~~  152 (281)
T 3cc6_A           92 ELYPYGELGHYLERNKNSL---KVLTLVLYSLQICKAMAYLESIN----------------CVHRDIAVRNILVASPECV  152 (281)
T ss_dssp             ECCTTCBHHHHHHHHTTTC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCSGGGEEEEETTEE
T ss_pred             ecCCCCCHHHHHHhccccC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCccceEEECCCCcE
Confidence            999987 544433322223   44556677889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCC---CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccc
Q psy6542         168 RISDLGLACDFSKKK---PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQI  239 (334)
Q Consensus       168 kl~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  239 (334)
                      ||+|||++.......   .....+++.|++||+.. .. ...+|+|+   ++|+++..+..||.........+       
T Consensus       153 kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~-------  225 (281)
T 3cc6_A          153 KLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIG-------  225 (281)
T ss_dssp             EECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHH-------
T ss_pred             EeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHH-------
Confidence            999999998765443   22344577899999853 33 34566666   66666654777775433111000       


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                    .+...          ...+.....++.+..  +...+...+|..|+ +.++++++...
T Consensus       226 --------------~~~~~----------~~~~~~~~~~~~l~~--li~~~l~~~p~~Rps~~ell~~L~~~  271 (281)
T 3cc6_A          226 --------------VLEKG----------DRLPKPDLCPPVLYT--LMTRCWDYDPSDRPRFTELVCSLSDV  271 (281)
T ss_dssp             --------------HHHHT----------CCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             --------------HHhcC----------CCCCCCCCCCHHHHH--HHHHHccCCchhCcCHHHHHHHHHHH
Confidence                          00000          000111223333444  77788888888888 78887777653

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=225.10  Aligned_cols=182  Identities=15%  Similarity=0.120  Sum_probs=141.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+..+|+.||||.+.....    .+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        39 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~  106 (314)
T 3com_A           39 EGSYGSVYKAIHKETGQIVAIKQVPVESD----LQEIIKEISIMQQCDSPHV--------VKYYGSYFKNTDLWIVMEYC  106 (314)
T ss_dssp             ----CEEEEEEETTTCCEEEEEEEETTSC----CHHHHHHHHHHHTCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             cCCCeEEEEEEECCCCCEEEEEecCchHH----HHHHHHHHHHHHhCCCCCC--------ccEEEEEEeCCEEEEEeecC
Confidence            56778999999999999999999986443    3456779999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+.......+   ....++.++.|++.||.|||+.+                ++||||||+||+++.++.+||+
T Consensus       107 ~~~~L~~~~~~~~~~~---~~~~~~~i~~~i~~~l~~lH~~~----------------i~H~dl~p~Nil~~~~~~~kl~  167 (314)
T 3com_A          107 GAGSVSDIIRLRNKTL---TEDEIATILQSTLKGLEYLHFMR----------------KIHRDIKAGNILLNTEGHAKLA  167 (314)
T ss_dssp             TTEEHHHHHHHHTCCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTCCEEEC
T ss_pred             CCCCHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------CcCCCcCHHHEEECCCCCEEEe
Confidence            997 544433222233   45556777889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||++.......  .....|++.|++||+... . +..+|+|+   ++|+++. +..||...
T Consensus       168 dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~  228 (314)
T 3com_A          168 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAE-GKPPYADI  228 (314)
T ss_dssp             CCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHH-SSCTTTTS
T ss_pred             ecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHh-CCCCCCCC
Confidence            999998765543  234568899999998532 2 44566666   5566555 55676543

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=226.11  Aligned_cols=243  Identities=12%  Similarity=0.028  Sum_probs=166.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee----cCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS----EPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~----~~~~~~iv   87 (334)
                      +++.+.||+|.++.+|+.||||++....  ....+.+.+|+++++.++||||        +++++++.    ..+.+|+|
T Consensus        39 ~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~lv  108 (317)
T 2buj_A           39 EGGFSYVDLVEGLHDGHFYALKRILCHE--QQDREEAQREADMHRLFNHPNI--------LRLVAYCLRERGAKHEAWLL  108 (317)
T ss_dssp             C--CEEEEEEEETTTCCEEEEEEEEESS--HHHHHHHHHHHHHHHTCCCTTB--------CCCCEEEEEEETTEEEEEEE
T ss_pred             CCCCeEEEEEEecCCCcEEEEEEEecCC--HHHHHHHHHHHHHHhhcCCCCe--------eeEEEEEEeccCCCceeEEE
Confidence            5677899999999999999999987543  2345578889999999999999        99999887    34578999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.|+ +..+...............++.++.|++.||.|||+++                |+||||||+||+++.++.
T Consensus       109 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~----------------ivH~dlkp~NIl~~~~~~  172 (317)
T 2buj_A          109 LPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKG----------------YAHRDLKPTNILLGDEGQ  172 (317)
T ss_dssp             EECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTSC
T ss_pred             EEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCHHHEEEcCCCC
Confidence            9999997 43333322111122355666778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC-----------CccccCccccccccccc-----cCCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKP-----------HASVESDCILHGYIKKL-----GGPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~-----------~~~~~t~~~~~~~v~~~-----~~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      +||+|||++........           ....||+.|++||+...     ....+|+|+   ++|+++.+ ..||.....
T Consensus       173 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g-~~p~~~~~~  251 (317)
T 2buj_A          173 PVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFG-EGPYDMVFQ  251 (317)
T ss_dssp             EEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHS-SCTTHHHHH
T ss_pred             EEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhC-CCChhhhhc
Confidence            99999999876543211           12346889999998532     245667777   56666554 445421100


Q ss_pred             CCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHH
Q psy6542         228 QSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGS  306 (334)
Q Consensus       228 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~  306 (334)
                               .     . +..    ...+.    .      ....+..+..++.+..  +...++..+|..|+ +.+++++
T Consensus       252 ---------~-----~-~~~----~~~~~----~------~~~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~~ll~~  300 (317)
T 2buj_A          252 ---------K-----G-DSV----ALAVQ----N------QLSIPQSPRHSSALWQ--LLNSMMTVDPHQRPHIPLLLSQ  300 (317)
T ss_dssp             ---------T-----T-SCH----HHHHH----C------C--CCCCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------c-----c-chh----hHHhh----c------cCCCCccccCCHHHHH--HHHHHhhcChhhCCCHHHHHHH
Confidence                     0     0 000    00000    0      0011112333444445  88888899999999 9999998


Q ss_pred             HHHHhC
Q psy6542         307 MARKAG  312 (334)
Q Consensus       307 l~~~~~  312 (334)
                      +.....
T Consensus       301 L~~~~~  306 (317)
T 2buj_A          301 LEALQP  306 (317)
T ss_dssp             HHHTCC
T ss_pred             hhhcCC
Confidence            887543

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.96  E-value=1.1e-28  Score=238.62  Aligned_cols=235  Identities=14%  Similarity=0.042  Sum_probs=161.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+.. +..||||.++.....   .+.+.+|+++|+.++||||        +++++++.+ +.+|+||||+
T Consensus       194 ~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~-~~~~iv~e~~  260 (452)
T 1fmk_A          194 QGCFGEVWMGTWNG-TTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEKL--------VQLYAVVSE-EPIYIVTEYM  260 (452)
T ss_dssp             ECSSCEEEEEEETT-TEEEEEEECCTTSSC---HHHHHHHHHHHHHCCCTTB--------CCEEEEECS-SSCEEEECCC
T ss_pred             CCCCeEEEEEEECC-CceEEEEEeccCCCC---HHHHHHHHHHHHhCCCCCE--------eeEEEEEcC-CceEEEehhh
Confidence            46778999999876 467999999865542   3467889999999999999        999999876 6789999999


Q ss_pred             CCC-hh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .|+ +. ++.......+   ....++.++.|++.||.|||+++                |+||||||+|||++.++.+||
T Consensus       261 ~~gsL~~~l~~~~~~~~---~~~~~~~i~~qi~~~l~~LH~~~----------------ivHrDlkp~Nill~~~~~~kl  321 (452)
T 1fmk_A          261 SKGSLLDFLKGETGKYL---RLPQLVDMAAQIASGMAYVERMN----------------YVHRDLRAANILVGENLVCKV  321 (452)
T ss_dssp             TTCBHHHHHSHHHHTTC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEECGGGCEEE
T ss_pred             cCCCHHHHHHhcCCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeCCCCChhhEEECCCCCEEE
Confidence            987 43 4432221222   44556778889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC---CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKKP---HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||+++.......   ....++..|++||+.. .. ...+|+|+   ++|+++..+..||.+....   +         
T Consensus       322 ~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~---~---------  389 (452)
T 1fmk_A          322 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR---E---------  389 (452)
T ss_dssp             CCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH---H---------
T ss_pred             CCCccceecCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH---H---------
Confidence            99999987654332   2234567899999853 23 44566666   7777777678887543310   0         


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                                   +...+...  .++    +..+.+++.+.+  +...|...+|..|| +.++++.+....
T Consensus       390 -------------~~~~i~~~--~~~----~~~~~~~~~l~~--li~~cl~~dP~~Rpt~~~l~~~L~~~~  439 (452)
T 1fmk_A          390 -------------VLDQVERG--YRM----PCPPECPESLHD--LMCQCWRKEPEERPTFEYLQAFLEDYF  439 (452)
T ss_dssp             -------------HHHHHHTT--CCC----CCCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred             -------------HHHHHHcC--CCC----CCCCCCCHHHHH--HHHHHccCChhhCcCHHHHHHHHHHHh
Confidence                         00011000  001    112334444555  77778888888888 777777776643

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.96  E-value=5.9e-29  Score=239.00  Aligned_cols=183  Identities=17%  Similarity=0.170  Sum_probs=143.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc------CCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL------RNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l------~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++.+.||+|.+..+|+.||||+++..   ......+.+|+++++.+      +|+||        +++++++...+.+|
T Consensus       107 ~G~fg~V~~a~~~~~~~~vAvK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~i--------v~~~~~~~~~~~~~  175 (429)
T 3kvw_A          107 KGSFGQVVKAYDHKVHQHVALKMVRNE---KRFHRQAAEEIRILEHLRKQDKDNTMNV--------IHMLENFTFRNHIC  175 (429)
T ss_dssp             ESSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHTTCTTSCSCB--------CCEEEEEEETTEEE
T ss_pred             cCccEEEEEEEECCCCcEEEEEEECCc---cchHHHHHHHHHHHHHHhhccccCCcCE--------EEEEeecccCCeEE
Confidence            577889999999999999999999853   23445667799998887      55688        99999999999999


Q ss_pred             EEEEccCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||+.|++ +.+.......+   ....+..++.||+.||.|||+++                |+||||||+|||++.+
T Consensus       176 lv~e~~~~~L~~~l~~~~~~~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivHrDlKp~NILl~~~  236 (429)
T 3kvw_A          176 MTFELLSMNLYELIKKNKFQGF---SLPLVRKFAHSILQCLDALHKNR----------------IIHCDLKPENILLKQQ  236 (429)
T ss_dssp             EEECCCCCBHHHHHHHTTTCCC---CHHHHHHHHHHHHHHHHHHHHHT----------------EECSCCSGGGEEESST
T ss_pred             EEEeccCCCHHHHHHhccCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eecCCCCHHHeEEccC
Confidence            9999999884 44433332223   44556677889999999999999                9999999999999999


Q ss_pred             CC--EEEEecccccccCCCCCCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 GH--VRISDLGLACDFSKKKPHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ~~--vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.  +||+|||+|+..... .....||+.|++||+.. . .+..+|+|+   ++|+++. +.+||.+.+
T Consensus       237 ~~~~vkL~DFG~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt-G~~pf~~~~  303 (429)
T 3kvw_A          237 GRSGIKVIDFGSSCYEHQR-VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLT-GYPLLPGED  303 (429)
T ss_dssp             TSCCEEECCCTTCEETTCC-CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             CCcceEEeecccceecCCc-ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHh-CCCCCCCCC
Confidence            87  999999999865544 34567899999999843 2 345566666   5566655 567776665

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.96  E-value=2.7e-29  Score=233.76  Aligned_cols=186  Identities=16%  Similarity=0.094  Sum_probs=144.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchH---------------HhhhHHHHHHHHHhcCCCCcccccccceeeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESR---------------VAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYK   76 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~---------------~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~   76 (334)
                      +++...||+|.+  +|+.||||.+........               ..+.+.+|+++++.++||||        +++++
T Consensus        41 ~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------~~~~~  110 (348)
T 2pml_X           41 QGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYC--------LTCEG  110 (348)
T ss_dssp             CCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTB--------CCCSE
T ss_pred             CCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCc--------ceEEE
Confidence            467779999999  899999999985432111               11678889999999999999        99999


Q ss_pred             EeecCCeEEEEEEccCCC-hhHH------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCc
Q psy6542          77 VTSEPNSHYIIGVRQSGP-KDQI------SRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPC  148 (334)
Q Consensus        77 ~~~~~~~~~ivmEy~~g~-l~~l------~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~  148 (334)
                      ++.+++.+|+||||++|+ +..+      ....  .........++.++.|++.||.|||+ ++                
T Consensus       111 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~~~----------------  172 (348)
T 2pml_X          111 IITNYDEVYIIYEYMENDSILKFDEYFFVLDKN--YTCFIPIQVIKCIIKSVLNSFSYIHNEKN----------------  172 (348)
T ss_dssp             EEESSSEEEEEEECCTTCBSSEESSSEESSCSS--SCCCCCHHHHHHHHHHHHHHHHHHHHTSC----------------
T ss_pred             EEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhc--cccCCCHHHHHHHHHHHHHHHHHHhccCC----------------
Confidence            999999999999999996 4332      1111  01223455667778899999999999 98                


Q ss_pred             EEeeCCCCCceeeCCCCCEEEEecccccccCCCCCCccccCcccccccccccc--C-C-cceeeh---hHHHHHcCCCCC
Q psy6542         149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLG--G-P-FVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       149 iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~~--~-~-~~~~w~---~~~~~l~~~~~~  221 (334)
                      ++||||||+||+++.++.+||+|||++............|+..|++||+....  + + .+|+|+   ++|+++. +..|
T Consensus       173 i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~-g~~p  251 (348)
T 2pml_X          173 ICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFY-NVVP  251 (348)
T ss_dssp             EECCCCCGGGEEECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHH-SSCS
T ss_pred             EeecCCChHhEEEcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHh-CCCC
Confidence            99999999999999999999999999998766655667789999999986543  2 3 566676   5555555 5667


Q ss_pred             CCCCC
Q psy6542         222 LHPES  226 (334)
Q Consensus       222 ~~~~~  226 (334)
                      |.+.+
T Consensus       252 f~~~~  256 (348)
T 2pml_X          252 FSLKI  256 (348)
T ss_dssp             SCCSS
T ss_pred             CCCCC
Confidence            76654

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.96  E-value=1e-28  Score=226.64  Aligned_cols=185  Identities=12%  Similarity=0.156  Sum_probs=133.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||||++..........+.+.++..+++.++||||        +++++++.+++.+|+||||+
T Consensus        35 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i--------~~~~~~~~~~~~~~lv~e~~  106 (318)
T 2dyl_A           35 SGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYI--------VQCFGTFITNTDVFIAMELM  106 (318)
T ss_dssp             -----CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTB--------CCEEEEEECSSEEEEEECCC
T ss_pred             ecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCce--------eeEEEEEecCCcEEEEEecc
Confidence            5677899999999999999999998776644445556666678899999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .+.++.+.......+   ....++.++.|++.||.|||++ +                ++||||||+||+++.++.+||+
T Consensus       107 ~~~~~~l~~~~~~~~---~~~~~~~~~~~i~~~l~~lH~~~~----------------i~H~dlkp~Nil~~~~~~~kl~  167 (318)
T 2dyl_A          107 GTCAEKLKKRMQGPI---PERILGKMTVAIVKALYYLKEKHG----------------VIHRDVKPSNILLDERGQIKLC  167 (318)
T ss_dssp             SEEHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHHHHHHC----------------CCCCCCCGGGEEECTTSCEEEC
T ss_pred             CCcHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHHHhhCC----------------EEeCCCCHHHEEECCCCCEEEE
Confidence            554555544332233   4555667788999999999995 8                9999999999999999999999


Q ss_pred             ecccccccCCCC-CCccccCcccccccccc------cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         171 DLGLACDFSKKK-PHASVESDCILHGYIKK------LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       171 DFGla~~~~~~~-~~~~~~t~~~~~~~v~~------~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      |||++....... .....|++.|++||+..      .. ...+|+|+   ++|+++. +..||..
T Consensus       168 dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~  231 (318)
T 2dyl_A          168 DFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELAT-GQFPYKN  231 (318)
T ss_dssp             CCTTC--------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHH-SSCTTTT
T ss_pred             ECCCchhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHh-CCCCCCC
Confidence            999998665443 23456899999999852      22 33566666   6666655 5567654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.96  E-value=9.9e-29  Score=233.42  Aligned_cols=184  Identities=16%  Similarity=0.115  Sum_probs=142.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC--------CCCcccccccceeeEEEEee----
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR--------NEPFKKCVLLFKMNLYKVTS----   79 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~--------h~~i~~~~~~~~v~~~~~~~----   79 (334)
                      +++.+.||+|.+..+|+.||||+++..   ....+.+.+|+++++.++        |+||        +++++++.    
T Consensus        47 ~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~~~i--------v~~~~~~~~~~~  115 (397)
T 1wak_A           47 WGHFSTVWLSWDIQGKKFVAMKVVKSA---EHYTETALDEIRLLKSVRNSDPNDPNREMV--------VQLLDDFKISGV  115 (397)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHSCTTCGGGGGB--------CCEEEEEEEEET
T ss_pred             ecCCeeEEEEEecCCCeEEEEEEEecC---CcchHHHHHHHHHHHHHhhcCCCCCCccee--------eeeecceeecCC
Confidence            467789999999999999999999743   224456788999999997        5667        99999988    


Q ss_pred             cCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCCCCC
Q psy6542          80 EPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDLKPA  157 (334)
Q Consensus        80 ~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDlKp~  157 (334)
                      .+..+|+||||+.|+ ++.+.......+   ....++.++.||+.||.|||++ +                |+||||||+
T Consensus       116 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~---~~~~~~~i~~qi~~aL~~lH~~~g----------------ivHrDikp~  176 (397)
T 1wak_A          116 NGTHICMVFEVLGHHLLKWIIKSNYQGL---PLPCVKKIIQQVLQGLDYLHTKCR----------------IIHTDIKPE  176 (397)
T ss_dssp             TEEEEEEEECCCCCBHHHHHHHTTTSCC---CHHHHHHHHHHHHHHHHHHHHTTC----------------EECCCCSGG
T ss_pred             CCceEEEEEeccCccHHHHHHhcccCCC---CHHHHHHHHHHHHHHHHHHHHhCC----------------EecCCCCHH
Confidence            566899999999888 455544332233   4455667788999999999998 8                999999999


Q ss_pred             ceeeCCCC-------------------------------------------------CEEEEecccccccCCCCCCcccc
Q psy6542         158 NILLDEHG-------------------------------------------------HVRISDLGLACDFSKKKPHASVE  188 (334)
Q Consensus       158 NiLl~~~~-------------------------------------------------~vkl~DFGla~~~~~~~~~~~~~  188 (334)
                      |||++.++                                                 .+||+|||+++..... .....|
T Consensus       177 NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-~~~~~g  255 (397)
T 1wak_A          177 NILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-FTEDIQ  255 (397)
T ss_dssp             GEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-SCSCCS
T ss_pred             HeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-CccCCC
Confidence            99999876                                                 7999999999876554 334578


Q ss_pred             Ccccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         189 SDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       189 t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      |+.|++||+.. . .+..+|+|+   ++|++++ +..||.+.+.
T Consensus       256 t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt-g~~pf~~~~~  298 (397)
T 1wak_A          256 TRQYRSLEVLIGSGYNTPADIWSTACMAFELAT-GDYLFEPHSG  298 (397)
T ss_dssp             CGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHH-SSCSCCCCCC
T ss_pred             CCcccCChhhcCCCCCcHHHHHHHHHHHHHHhh-CCCCCCCCcc
Confidence            99999999853 2 344566666   5555554 6678876553

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.96  E-value=1.7e-28  Score=223.40  Aligned_cols=170  Identities=18%  Similarity=0.188  Sum_probs=129.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHh--cCCCCcccccccceeeEEEEeec----CCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNH--LRNEPFKKCVLLFKMNLYKVTSE----PNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~--l~h~~i~~~~~~~~v~~~~~~~~----~~~~~   85 (334)
                      +++.+.||+|.+  +|+.||||++....     ...+..|.+++..  ++||||        +++++++..    .+.+|
T Consensus        18 ~G~~g~V~~~~~--~~~~vavK~~~~~~-----~~~~~~e~~~~~~~~l~h~ni--------v~~~~~~~~~~~~~~~~~   82 (301)
T 3q4u_A           18 KGRYGEVWRGSW--QGENVAVKIFSSRD-----EKSWFRETELYNTVMLRHENI--------LGFIASDMTSRHSSTQLW   82 (301)
T ss_dssp             ECSSEEEEEEEE--TTEEEEEEEECGGG-----HHHHHHHHHHHHHTCCCCTTB--------CCEEEEEEEEETTEEEEE
T ss_pred             cCCCcEEEEEEE--CCEEEEEEEecccc-----chhhHHHHHHHHHhhccCcCe--------eeEEEeeccccCCCceeE
Confidence            477889999987  68999999987432     2344557777777  899999        999988653    35689


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh--------cCCCCCchhhhhhcCCCCcEEeeCCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCH--------SALNKNPLIAIFLTLSVPCLHFRDLKP  156 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH--------~~~~~~~~~~~~~~~~~~~iiHrDlKp  156 (334)
                      +||||++|+ +..+....  .+   .....+.++.|++.||.|||        +.+                |+||||||
T Consensus        83 lv~e~~~~g~L~~~l~~~--~~---~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~----------------ivH~Dlkp  141 (301)
T 3q4u_A           83 LITHYHEMGSLYDYLQLT--TL---DTVSCLRIVLSIASGLAHLHIEIFGTQGKPA----------------IAHRDLKS  141 (301)
T ss_dssp             EEECCCTTCBHHHHHTTC--CB---CHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE----------------EECSCCCG
T ss_pred             EehhhccCCCHHHHHhhc--cc---CHHHHHHHHHHHHHHHHHHHHhhhhccCCCC----------------eecCCCCh
Confidence            999999987 44333221  22   45556778889999999999        777                99999999


Q ss_pred             CceeeCCCCCEEEEecccccccCCCCC------CccccCcccccccccccc--------CCcceeeh---hHHHHHcC
Q psy6542         157 ANILLDEHGHVRISDLGLACDFSKKKP------HASVESDCILHGYIKKLG--------GPFVSAWQ---TRYAKLFP  217 (334)
Q Consensus       157 ~NiLl~~~~~vkl~DFGla~~~~~~~~------~~~~~t~~~~~~~v~~~~--------~~~~~~w~---~~~~~l~~  217 (334)
                      +|||++.++.+||+|||+|+.......      ....||+.|++||+....        +..+|+|+   ++|+++.+
T Consensus       142 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg  219 (301)
T 3q4u_A          142 KNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARR  219 (301)
T ss_dssp             GGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhh
Confidence            999999999999999999986544432      234789999999985432        23567777   66666654

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.96  E-value=2.7e-29  Score=232.62  Aligned_cols=255  Identities=12%  Similarity=0.053  Sum_probs=159.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHH--HHhcCCCCcccccccceeeEEEEee-----cCCeE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEI--FNHLRNEPFKKCVLLFKMNLYKVTS-----EPNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~i--l~~l~h~~i~~~~~~~~v~~~~~~~-----~~~~~   84 (334)
                      +++.+.||+|..  +|+.||||+++....     ..+..|.++  +..++||||        +++++.+.     ....+
T Consensus        23 ~G~~g~Vy~~~~--~~~~vavK~~~~~~~-----~~~~~e~~~~~~~~~~h~~i--------~~~~~~~~~~~~~~~~~~   87 (336)
T 3g2f_A           23 RGRYGAVYKGSL--DERPVAVKVFSFANR-----QNFINEKNIYRVPLMEHDNI--------ARFIVGDERVTADGRMEY   87 (336)
T ss_dssp             ECSSEEEEEEEE--TTEEEEEEEEEGGGH-----HHHHHHHHHHTSTTCCCTTB--------CCEEEEEEEECTTSCEEE
T ss_pred             cCCCeEEEEEEE--CCeEEEEEEeeccch-----hhHHHHHHHHHHHhccCcch--------hhheecccccccCCCceE
Confidence            577889999966  689999999974332     223334444  455999999        99987543     23468


Q ss_pred             EEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC---------CCCCchhhhhhcCCCCcEEeeCC
Q psy6542          85 YIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA---------LNKNPLIAIFLTLSVPCLHFRDL  154 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~---------~~~~~~~~~~~~~~~~~iiHrDl  154 (334)
                      |+||||++|+ +..+....  ..   .....+.++.|++.||.|||+.         +                |+||||
T Consensus        88 ~lv~e~~~~g~L~~~l~~~--~~---~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~----------------ivH~Di  146 (336)
T 3g2f_A           88 LLVMEYYPNGSLXKYLSLH--TS---DWVSSCRLAHSVTRGLAYLHTELPRGDHYKPA----------------ISHRDL  146 (336)
T ss_dssp             EEEECCCTTCBHHHHHHHC--CB---CHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCC----------------EECSSC
T ss_pred             EEEEecCCCCcHHHHHhhc--cc---chhHHHHHHHHHHHHHHHHHhhhccccccccc----------------eeeccc
Confidence            9999999887 54443322  12   3444567788999999999999         7                999999


Q ss_pred             CCCceeeCCCCCEEEEecccccccCCCC----------CCccccCccccccccccc--------c-CCcceeeh---hHH
Q psy6542         155 KPANILLDEHGHVRISDLGLACDFSKKK----------PHASVESDCILHGYIKKL--------G-GPFVSAWQ---TRY  212 (334)
Q Consensus       155 Kp~NiLl~~~~~vkl~DFGla~~~~~~~----------~~~~~~t~~~~~~~v~~~--------~-~~~~~~w~---~~~  212 (334)
                      ||+|||++.++.+||+|||+++.+....          .....||+.|++||+...        . +..+|+|+   ++|
T Consensus       147 kp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~  226 (336)
T 3g2f_A          147 NSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYW  226 (336)
T ss_dssp             SGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHH
Confidence            9999999999999999999998664322          223468999999998542        2 23567777   777


Q ss_pred             HHHcCCCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhh
Q psy6542         213 AKLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLS  292 (334)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~  292 (334)
                      +++++..++|.+.+.... ...........+ ..   .............|.......  .....++.+.+  +...|+.
T Consensus       227 ell~g~~p~~~~~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~--li~~cl~  297 (336)
T 3g2f_A          227 EIFMRCTDLFPGESVPEY-QMAFQTEVGNHP-TF---EDMQVLVSREKQRPKFPEAWK--ENSLAVRSLKE--TIEDCWD  297 (336)
T ss_dssp             HHHTTBGGGSTTSCCCCC-CCTTHHHHCSSC-CH---HHHHHHHTTSCCCCCCCTTCC--CCSHHHHHHHH--HHHHHSC
T ss_pred             HHHhcCCcCCCccchhHH-HHhhhcccCCCc-hH---HHHHhhhcccccCCCCCcccc--cccchHHHHHH--HHHHHhc
Confidence            777766666555443221 111111111100 10   111111111111010000000  00001112333  7888899


Q ss_pred             cccccch-hHHHHHHHHHHh
Q psy6542         293 LRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       293 ~~~~~r~-~~~lL~~l~~~~  311 (334)
                      .+|..|+ +.++++.|....
T Consensus       298 ~dP~~Rps~~e~l~~L~~ll  317 (336)
T 3g2f_A          298 QDAEARLTAQXAEERMAELM  317 (336)
T ss_dssp             SSGGGSCCHHHHHHHHHHHH
T ss_pred             CChhhCcchHHHHHHHHHHH
Confidence            9999999 888888877744

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.96  E-value=6.7e-29  Score=222.40  Aligned_cols=238  Identities=11%  Similarity=0.067  Sum_probs=169.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC--CeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP--NSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~--~~~~ivmE   89 (334)
                      +++.+.||+|.+.  |+.||||+++.........+.+.+|+++++.++||||        +++++++.+.  +.+++|||
T Consensus        20 ~G~~g~V~~~~~~--~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~lv~e   89 (271)
T 3kmu_A           20 ENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNV--------LPVLGACQSPPAPHPTLITH   89 (271)
T ss_dssp             EETTEEEEEEEET--TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTE--------ECEEEEECTTTSSSCEEEEE
T ss_pred             CCCcceEEEEEEC--CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCch--------hheEEEEccCCCCCeEeeec
Confidence            4677899999985  8899999999877666666788999999999999999        9999999877  78999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |++|+ +..+......  .......++.++.|++.||.|||+++              ++++||||||+||+++.++.++
T Consensus        90 ~~~~~~L~~~l~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~--------------~~i~H~dikp~Nil~~~~~~~~  153 (271)
T 3kmu_A           90 WMPYGSLYNVLHEGTN--FVVDQSQAVKFALDMARGMAFLHTLE--------------PLIPRHALNSRSVMIDEDMTAR  153 (271)
T ss_dssp             CCTTCBHHHHHHSCSS--CCCCHHHHHHHHHHHHHHHHHHTTSS--------------SCCTTCCCSGGGEEECTTSCEE
T ss_pred             ccCCCcHHHHHhhccc--CCCCHHHHHHHHHHHHHHHHHHhcCC--------------CceecCCCccceEEEcCCccee
Confidence            99986 5444333211  11255566778889999999999987              4599999999999999999999


Q ss_pred             EEecccccccCCCCCCccccCcccccccccccc--CC---cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccc
Q psy6542         169 ISDLGLACDFSKKKPHASVESDCILHGYIKKLG--GP---FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIE  240 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~~--~~---~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  240 (334)
                      |+|||++......   ...||+.|++||+....  ..   .+|+|+   ++|+++. +..||.+.+..   +        
T Consensus       154 l~~~~~~~~~~~~---~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~---~--------  218 (271)
T 3kmu_A          154 ISMADVKFSFQSP---GRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVT-REVPFADLSNM---E--------  218 (271)
T ss_dssp             EEGGGSCCTTSCT---TCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHH-CSCTTTTSCHH---H--------
T ss_pred             EEeccceeeeccc---CccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHh-CCCCccccChH---H--------
Confidence            9999987654332   34678999999985322  22   467777   6666665 56666433210   0        


Q ss_pred             ccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         241 EVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       241 ~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                                   .........      ...+.....++.+..  +...+...+|..|+ +.++++.+.+..
T Consensus       219 -------------~~~~~~~~~------~~~~~~~~~~~~~~~--li~~~l~~~p~~Rps~~~il~~L~~l~  269 (271)
T 3kmu_A          219 -------------IGMKVALEG------LRPTIPPGISPHVSK--LMKICMNEDPAKRPKFDMIVPILEKMQ  269 (271)
T ss_dssp             -------------HHHHHHHSC------CCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred             -------------HHHHHHhcC------CCCCCCCCCCHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence                         000000000      000011233444444  77778888899998 888888877643

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.96  E-value=4.3e-28  Score=223.45  Aligned_cols=250  Identities=14%  Similarity=0.071  Sum_probs=164.0

Q ss_pred             CCCceEE----EeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--CCeEE
Q psy6542          12 RVSKWRV----KPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--PNSHY   85 (334)
Q Consensus        12 ~~~~~~V----~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--~~~~~   85 (334)
                      +++.+.|    |.+.+..+|+.||||+++.... ....+.+.+|+++++.++||||        +++++++.+  ...+|
T Consensus        41 ~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~  111 (318)
T 3lxp_A           41 EGHFGKVSLYCYDPTNDGTGEMVAVKALKADAG-PQHRSGWKQEIDILRTLYHEHI--------IKYKGCCEDAGAASLQ  111 (318)
T ss_dssp             ECSSEEEEEEEECSCC--CCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEEETTTTEEE
T ss_pred             CCCCeEEEEEEEccCCCCCCcEEEEEEeccccC-hHHHHHHHHHHHHHHhCCCcch--------hhEEEEEecCCCceEE
Confidence            4677788    4556778999999999986543 3345678899999999999999        999999986  46799


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +..+....  .+   ....++.++.|++.||.|||+.+                |+||||||+||+++.+
T Consensus       112 lv~e~~~~~~L~~~l~~~--~~---~~~~~~~i~~~l~~~l~~LH~~~----------------ivH~Dikp~Nil~~~~  170 (318)
T 3lxp_A          112 LVMEYVPLGSLRDYLPRH--SI---GLAQLLLFAQQICEGMAYLHAQH----------------YIHRDLAARNVLLDND  170 (318)
T ss_dssp             EEECCCTTCBHHHHGGGS--CC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECTT
T ss_pred             EEEecccCCcHHHHHhhC--CC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccCCCCchheEEEcCC
Confidence            999999987 54443322  22   45566778889999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCC-----CCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         165 GHVRISDLGLACDFSKKK-----PHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      +.+||+|||+++......     .....++..|++||+... . +..+|+|+   ++|+++. +..||....    ....
T Consensus       171 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~-g~~p~~~~~----~~~~  245 (318)
T 3lxp_A          171 RLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT-HCDSSQSPP----TKFL  245 (318)
T ss_dssp             CCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHT-TTCGGGSHH----HHHH
T ss_pred             CCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHh-CCCcccccc----hhhh
Confidence            999999999999776543     223456778999998532 2 34566666   5555555 444542211    0000


Q ss_pred             hcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         235 FMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                         ..........   ....+...+..      ....+.....++.+.+  +..+|...+|..|+ +.++++.+...
T Consensus       246 ---~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~l~~--li~~~l~~dP~~Rps~~ell~~L~~l  308 (318)
T 3lxp_A          246 ---ELIGIAQGQM---TVLRLTELLER------GERLPRPDKCPAEVYH--LMKNCWETEASFRPTFENLIPILKTV  308 (318)
T ss_dssp             ---HHHCSCCHHH---HHHHHHHHHHT------TCCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ---hhhcccccch---hHHHHHHHHhc------ccCCCCCccccHHHHH--HHHHHcCCCcccCcCHHHHHHHHHHH
Confidence               0000000000   00111111111      0111122344445555  88888888999998 77777666554

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.96  E-value=1.2e-28  Score=231.47  Aligned_cols=186  Identities=12%  Similarity=0.048  Sum_probs=135.6

Q ss_pred             CCCceEEEeceeCCC-----CCcEEEEEeeCCCcch---------HHhhhHHHHHHHHHhcCCCCcccccccceeeEEEE
Q psy6542          12 RVSKWRVKPPSLKPL-----GFPIQIGMLRHRPHES---------RVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKV   77 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~-----~~~vAIK~l~~~~~~~---------~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~   77 (334)
                      +++.+.||+|.++.+     ++.||||++.......         ........|+..++.++||||        ++++++
T Consensus        45 ~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~i--------v~~~~~  116 (364)
T 3op5_A           45 QGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGV--------PKYWGS  116 (364)
T ss_dssp             CC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCS--------CCEEEE
T ss_pred             cCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCC--------CeEEee
Confidence            577889999988775     6899999998665310         011123346667788899999        999999


Q ss_pred             eecC----CeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeC
Q psy6542          78 TSEP----NSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRD  153 (334)
Q Consensus        78 ~~~~----~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrD  153 (334)
                      +...    ..+||||||+.|++..+.......+   ....++.++.||+.||.|||+++                |+|||
T Consensus       117 ~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~~~l---~~~~~~~i~~qi~~~l~~lH~~~----------------iiHrD  177 (364)
T 3op5_A          117 GLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRF---SRKTVLQLSLRILDILEYIHEHE----------------YVHGD  177 (364)
T ss_dssp             EEEEETTEEEEEEEEECEEEEHHHHHHHTTSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCC
T ss_pred             eeeccCCcceEEEEEeCCCCCHHHHHHhccCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eEEec
Confidence            8754    5589999999334655544332333   45566778889999999999999                99999


Q ss_pred             CCCCceeeC--CCCCEEEEecccccccCCCC---------CCccccCccccccccccc-cCC-cceeeh---hHHHHHcC
Q psy6542         154 LKPANILLD--EHGHVRISDLGLACDFSKKK---------PHASVESDCILHGYIKKL-GGP-FVSAWQ---TRYAKLFP  217 (334)
Q Consensus       154 lKp~NiLl~--~~~~vkl~DFGla~~~~~~~---------~~~~~~t~~~~~~~v~~~-~~~-~~~~w~---~~~~~l~~  217 (334)
                      |||+|||++  .++.+||+|||+|+.+....         .....||+.|++||+... .++ .+|+|+   ++|++++ 
T Consensus       178 lkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~-  256 (364)
T 3op5_A          178 IKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLT-  256 (364)
T ss_dssp             CCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHh-
Confidence            999999998  88999999999998654332         133458999999998532 244 556666   6666655 


Q ss_pred             CCCCCCCC
Q psy6542         218 NRLELHPE  225 (334)
Q Consensus       218 ~~~~~~~~  225 (334)
                      +..||.+.
T Consensus       257 g~~Pf~~~  264 (364)
T 3op5_A          257 GHLPWEDN  264 (364)
T ss_dssp             SCCTTGGG
T ss_pred             CCCCcccc
Confidence            66677643

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.96  E-value=2.9e-28  Score=220.88  Aligned_cols=241  Identities=14%  Similarity=0.080  Sum_probs=158.7

Q ss_pred             CCCceEEEeceeCC-CCC--cEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKP-LGF--PIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-~~~--~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +++.+.||+|.+.. +++  .||||+++.... .....+.+.+|+++++.++||||        +++++++.+++ .++|
T Consensus        28 ~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~-~~~v   98 (291)
T 1u46_A           28 DGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL--------IRLYGVVLTPP-MKMV   98 (291)
T ss_dssp             ----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSS-CEEE
T ss_pred             CCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCc--------ccEEEEEccCC-ceee
Confidence            46778999998643 333  689999986643 33455678899999999999999        99999998765 8999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.++ +..........+   ....++.++.|++.||.|||+++                ++||||||+||+++.++.
T Consensus        99 ~e~~~~~~L~~~l~~~~~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dikp~Nili~~~~~  159 (291)
T 1u46_A           99 TELAPLGSLLDRLRKHQGHF---LLGTLSRYAVQVAEGMGYLESKR----------------FIHRDLAARNLLLATRDL  159 (291)
T ss_dssp             EECCTTCBHHHHHHHHGGGS---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEEEETTE
T ss_pred             EecccCCCHHHHHHhccCCc---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCchheEEEcCCCC
Confidence            9999987 433323222223   45556677889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC-----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         167 VRISDLGLACDFSKKKP-----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                      +||+|||+++.......     ....++..|++||+.. .. ...+|+|+   ++|+++..+..||.+.+..   +    
T Consensus       160 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~---~----  232 (291)
T 1u46_A          160 VKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS---Q----  232 (291)
T ss_dssp             EEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---H----
T ss_pred             EEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH---H----
Confidence            99999999987755432     2234577899999853 22 34566666   6666666577787554310   0    


Q ss_pred             ccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHhC
Q psy6542         237 DQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKAG  312 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~~  312 (334)
                                       . ...+...     ....+....++..+..  +...+...+|..|+ +.++++.+.+...
T Consensus       233 -----------------~-~~~~~~~-----~~~~~~~~~~~~~l~~--li~~~l~~~p~~Rps~~~l~~~l~~~~~  284 (291)
T 1u46_A          233 -----------------I-LHKIDKE-----GERLPRPEDCPQDIYN--VMVQCWAHKPEDRPTFVALRDFLLEAQP  284 (291)
T ss_dssp             -----------------H-HHHHHTS-----CCCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred             -----------------H-HHHHHcc-----CCCCCCCcCcCHHHHH--HHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence                             0 0011000     0000112233444444  77788888999999 8888888876544

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=222.71  Aligned_cols=184  Identities=18%  Similarity=0.132  Sum_probs=141.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+..+++.||||.+.....  ...+.+.+|+.+++.++||||        +++++++..++.+++||||+
T Consensus        32 ~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~lv~e~~  101 (295)
T 2clq_A           32 KGTYGIVYAGRDLSNQVRIAIKEIPERDS--RYSQPLHEEIALHKHLKHKNI--------VQYLGSFSENGFIKIFMEQV  101 (295)
T ss_dssp             ECSSSEEEEEEETTTCCEEEEEEEECCCC-----HHHHHHHHHHHTCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             ecCcEEEEEEEECCCCeEEEEEEccCCch--HHHHHHHHHHHHHHhCCCCCE--------eeEeeEEEeCCcEEEEEEeC
Confidence            46788999999999999999999986543  234567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-CCCEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-HGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-~~~vkl  169 (334)
                      +|+ +..+....... .......+..++.|++.||.|||+++                ++||||||+||+++. ++.+||
T Consensus       102 ~~~~L~~~l~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dl~p~Nil~~~~~~~~kl  164 (295)
T 2clq_A          102 PGGSLSALLRSKWGP-LKDNEQTIGFYTKQILEGLKYLHDNQ----------------IVHRDIKGDNVLINTYSGVLKI  164 (295)
T ss_dssp             SEEEHHHHHHHTTCC-CTTCHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEEETTTCCEEE
T ss_pred             CCCCHHHHHHhhccC-CCccHHHHHHHHHHHHHHHHHHHhCC----------------EEccCCChhhEEEECCCCCEEE
Confidence            887 54443332111 12234556667789999999999999                999999999999987 899999


Q ss_pred             EecccccccCCCC--CCccccCccccccccccc---cC-Ccceeeh---hHHHHHcCCCCCCC
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIKKL---GG-PFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~---~~-~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      +|||+++......  .....|++.|++||+...   .+ ..+|+|+   ++|+++. +..||.
T Consensus       165 ~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~  226 (295)
T 2clq_A          165 SDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMAT-GKPPFY  226 (295)
T ss_dssp             CCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHH-TSCTTG
T ss_pred             eecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHH-CCCCcc
Confidence            9999998765432  334568999999998532   23 4566666   6666655 555653

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.96  E-value=1.3e-28  Score=225.70  Aligned_cols=242  Identities=16%  Similarity=0.063  Sum_probs=167.3

Q ss_pred             CCCceEEEece-----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecC-CeE
Q psy6542          12 RVSKWRVKPPS-----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEP-NSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~-----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~-~~~   84 (334)
                      +++.+.||+|.     +..+++.||||+++..... ...+.+.+|+++++.+ +||||        +++++++... +.+
T Consensus        37 ~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~~hp~i--------v~~~~~~~~~~~~~  107 (316)
T 2xir_A           37 RGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH-SEHRALMSELKILIHIGHHLNV--------VNLLGACTKPGGPL  107 (316)
T ss_dssp             ECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCH-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEECCTTSCC
T ss_pred             CCCceeEEEEEEecCCccccceEEEEEecccCCCc-HHHHHHHHHHHHHHhcccCCCe--------eeEEEEEecCCCce
Confidence            46778999998     4567899999999865542 2345678899999999 68999        9999998765 459


Q ss_pred             EEEEEccCCC-hhHHhhhhhhhh------------hHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEe
Q psy6542          85 YIIGVRQSGP-KDQISRSKINRY------------HKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHF  151 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~~------------~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiH  151 (334)
                      |+||||++|+ +..+........            .......++.++.|++.||.|||+++                |+|
T Consensus       108 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~----------------i~H  171 (316)
T 2xir_A          108 MVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK----------------CIH  171 (316)
T ss_dssp             EEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT----------------CCC
T ss_pred             EEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC----------------ccc
Confidence            9999999987 544433322110            00345666778889999999999999                999


Q ss_pred             eCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCC
Q psy6542         152 RDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       152 rDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~  222 (334)
                      |||||+||+++.++.+||+|||+++.......    ....+|+.|++||+. ...++ .+|+|+   ++|+++..+..||
T Consensus       172 ~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~  251 (316)
T 2xir_A          172 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY  251 (316)
T ss_dssp             SCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred             ccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999987655432    234567889999984 33344 555566   6667766577787


Q ss_pred             CCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hH
Q psy6542         223 HPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQ  301 (334)
Q Consensus       223 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~  301 (334)
                      .+.....   .                     +...+....      ..+.....++.+..  +...+...+|..|+ +.
T Consensus       252 ~~~~~~~---~---------------------~~~~~~~~~------~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~  299 (316)
T 2xir_A          252 PGVKIDE---E---------------------FCRRLKEGT------RMRAPDYTTPEMYQ--TMLDCWHGEPSQRPTFS  299 (316)
T ss_dssp             TTCCCSH---H---------------------HHHHHHHTC------CCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHH
T ss_pred             cccchhH---H---------------------HHHHhccCc------cCCCCCCCCHHHHH--HHHHHcCCChhhCcCHH
Confidence            5543110   0                     000000000      00011223334444  77778888888888 88


Q ss_pred             HHHHHHHHH
Q psy6542         302 ELLGSMARK  310 (334)
Q Consensus       302 ~lL~~l~~~  310 (334)
                      ++++++...
T Consensus       300 ell~~L~~~  308 (316)
T 2xir_A          300 ELVEHLGNL  308 (316)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887777654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.96  E-value=2.3e-29  Score=249.76  Aligned_cols=162  Identities=12%  Similarity=0.108  Sum_probs=120.5

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCc--------chHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPH--------ESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~--------~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .+..++...+|+.||+|++.+...        .....+.+.+|+++|+++ .|+||        +++++++++++.+|||
T Consensus       249 ~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i--------~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          249 AHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDA--------PAVLAHGENAQSGWLV  320 (569)
T ss_dssp             ---CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCC--------CCEEEEEECSSEEEEE
T ss_pred             cccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCe--------eEEEEEEEECCEEEEE
Confidence            344667777899999999987642        223345788999999999 69999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||+|+ +..++... ..+   .+.   .|+.||+.||.|||++|                ||||||||+|||++++|.
T Consensus       321 MEyv~G~~L~d~i~~~-~~l---~~~---~I~~QIl~AL~ylH~~G----------------IIHRDIKPeNILL~~dg~  377 (569)
T 4azs_A          321 MEKLPGRLLSDMLAAG-EEI---DRE---KILGSLLRSLAALEKQG----------------FWHDDVRPWNVMVDARQH  377 (569)
T ss_dssp             EECCCSEEHHHHHHTT-CCC---CHH---HHHHHHHHHHHHHHHTT----------------CEESCCCGGGEEECTTSC
T ss_pred             EecCCCCcHHHHHHhC-CCC---CHH---HHHHHHHHHHHHHHHCC----------------ceeccCchHhEEECCCCC
Confidence            9999999 54443332 233   233   34569999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC--CCccccCccccccccccccCCcceeeh
Q psy6542         167 VRISDLGLACDFSKKK--PHASVESDCILHGYIKKLGGPFVSAWQ  209 (334)
Q Consensus       167 vkl~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~~~~~~~~~w~  209 (334)
                      +||+|||+|+......  ..+.+||+.||+||+....+....+||
T Consensus       378 vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g~~~~~~d~~  422 (569)
T 4azs_A          378 ARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAENKSWNGFWR  422 (569)
T ss_dssp             EEECCCTTEESCC---CCSHHHHHHHHHHHHHHC-----------
T ss_pred             EEEeecccCeeCCCCCccccCceechhhccHHHhCCCCCCccccc
Confidence            9999999999776543  345689999999999766566566666

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.95  E-value=1.2e-29  Score=232.79  Aligned_cols=183  Identities=17%  Similarity=0.142  Sum_probs=135.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee------------
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS------------   79 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~------------   79 (334)
                      +++.+.||+|.+..+|+.||||.+....  ....+.+.+|+++++.++||||        +++++++.            
T Consensus        21 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~~~~~   90 (320)
T 2i6l_A           21 CGGNGLVFSAVDNDCDKRVAIKKIVLTD--PQSVKHALREIKIIRRLDHDNI--------VKVFEILGPSGSQLTDDVGS   90 (320)
T ss_dssp             -----CEEEEEETTTTEEEEEEEEECCS--HHHHHHHHHHHHHHHTCCCTTB--------CCEEEEECTTSCBCCC----
T ss_pred             cCCCeEEEEEEECCCCeEEEEEEEecCC--hHHHHHHHHHHHHHHhcCCCCe--------eEEEEecccccccccccccc
Confidence            4677899999999999999999998543  3345677889999999999999        99998873            


Q ss_pred             --cCCeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCC
Q psy6542          80 --EPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPA  157 (334)
Q Consensus        80 --~~~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~  157 (334)
                        +.+.+|+||||++|++..+...  ..+   ....++.++.|++.||.|||+++                |+||||||+
T Consensus        91 ~~~~~~~~lv~e~~~~~L~~~~~~--~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dlkp~  149 (320)
T 2i6l_A           91 LTELNSVYIVQEYMETDLANVLEQ--GPL---LEEHARLFMYQLLRGLKYIHSAN----------------VLHRDLKPA  149 (320)
T ss_dssp             CCSCSEEEEEEECCSEEHHHHHTT--CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCSGG
T ss_pred             ccccCceeEEeeccCCCHHHHhhc--CCc---cHHHHHHHHHHHHHHHHHHHhCC----------------EecCCCCHH
Confidence              4468999999999875444332  122   44555677889999999999999                999999999


Q ss_pred             ceeeC-CCCCEEEEecccccccCCCC-----CCccccCcccccccccc--ccCC-cceeeh---hHHHHHcCCCCCCCCC
Q psy6542         158 NILLD-EHGHVRISDLGLACDFSKKK-----PHASVESDCILHGYIKK--LGGP-FVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       158 NiLl~-~~~~vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~--~~~~-~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      ||+++ +++.+||+|||+++......     .....++..|++||+..  ..++ .+|+|+   ++|+++. +..||.+.
T Consensus       150 Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~  228 (320)
T 2i6l_A          150 NLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLT-GKTLFAGA  228 (320)
T ss_dssp             GEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHH-SSCSSCCS
T ss_pred             HEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHh-CCCCCCCC
Confidence            99997 56789999999998764322     23345688899999742  3344 556666   5566655 56677665


Q ss_pred             C
Q psy6542         226 S  226 (334)
Q Consensus       226 ~  226 (334)
                      +
T Consensus       229 ~  229 (320)
T 2i6l_A          229 H  229 (320)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.95  E-value=5.8e-29  Score=223.91  Aligned_cols=184  Identities=24%  Similarity=0.267  Sum_probs=136.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||++..... .....+.+.+|+++++.++||||        +++++++.+++.+|+||||
T Consensus        21 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~   92 (276)
T 2h6d_A           21 VGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHI--------IKLYQVISTPTDFFMVMEY   92 (276)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             CCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCE--------eEEEEEEecCCeEEEEEec
Confidence            46778999999999999999999975432 22234467889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+.... ..+   .....+.++.|++.||.|||+++                ++||||||+||+++.++.+||
T Consensus        93 ~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dl~p~Nil~~~~~~~~l  152 (276)
T 2h6d_A           93 VSGGELFDYICKH-GRV---EEMEARRLFQQILSAVDYCHRHM----------------VVHRDLKPENVLLDAHMNAKI  152 (276)
T ss_dssp             CCSCBHHHHHHHH-CSC---CHHHHHHHHHHHHHHHHHHHHHC----------------SSCCCCCGGGEEECTTSCEEE
T ss_pred             cCCCcHHHHHhcc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CccCCCChhhEEECCCCCEEE
Confidence            9886 43332322 122   44556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC-CCccccCcccccccccccc-C--Ccceeeh---hHHHHHcCCCCCCCC
Q psy6542         170 SDLGLACDFSKKK-PHASVESDCILHGYIKKLG-G--PFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       170 ~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~~~-~--~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +|||++....... .....+++.|++||+.... +  ..+|+|+   ++|+++. +..||..
T Consensus       153 ~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~  213 (276)
T 2h6d_A          153 ADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLC-GTLPFDD  213 (276)
T ss_dssp             CCCCGGGCCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHH-SSCSSCC
T ss_pred             eecccccccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHh-CCCCCCC
Confidence            9999998765543 2345678999999985433 2  3566677   5666655 5556644

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.95  E-value=2.1e-29  Score=232.17  Aligned_cols=187  Identities=17%  Similarity=0.116  Sum_probs=141.7

Q ss_pred             CCCceEEEeceeC-CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc---CCCCcccccccceeeEEEEee-----cCC
Q psy6542          12 RVSKWRVKPPSLK-PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL---RNEPFKKCVLLFKMNLYKVTS-----EPN   82 (334)
Q Consensus        12 ~~~~~~V~~a~~~-~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l---~h~~i~~~~~~~~v~~~~~~~-----~~~   82 (334)
                      +++.+.||+|.+. .+|+.||||+++...........+.+|+.+++.+   +||||        +++++++.     ...
T Consensus        21 ~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i--------~~~~~~~~~~~~~~~~   92 (326)
T 1blx_A           21 EGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNV--------VRLFDVCTVSRTDRET   92 (326)
T ss_dssp             EETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTB--------CCEEEEEEEEECSSEE
T ss_pred             ccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCe--------EeeeeeeeecccCCCc
Confidence            4677899999995 7789999999986554333344566788888776   89999        99999987     556


Q ss_pred             eEEEEEEccCCChhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          83 SHYIIGVRQSGPKDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        83 ~~~ivmEy~~g~l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      .+++||||++|++..+... ....+   ....++.++.|++.||.|||+++                |+||||||+||++
T Consensus        93 ~~~lv~e~~~~~L~~~l~~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~g----------------i~H~dlkp~Nili  153 (326)
T 1blx_A           93 KLTLVFEHVDQDLTTYLDKVPEPGV---PTETIKDMMFQLLRGLDFLHSHR----------------VVHRDLKPQNILV  153 (326)
T ss_dssp             EEEEEEECCSCBHHHHHHHSCTTCS---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEE
T ss_pred             eEEEEEecCCCCHHHHHHhcccCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ceeccCCHHHeEE
Confidence            7999999999885443332 21123   44556677889999999999999                9999999999999


Q ss_pred             CCCCCEEEEecccccccCCCC-CCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         162 DEHGHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       162 ~~~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +.++.+||+|||+++...... .....|++.|++||+.. . ....+|+|+   ++|+++ ++..||.+.+
T Consensus       154 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~-~g~~pf~~~~  223 (326)
T 1blx_A          154 TSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMF-RRKPLFRGSS  223 (326)
T ss_dssp             CTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHH-HSSCSCCCSS
T ss_pred             cCCCCEEEecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHH-cCCCCCCCCC
Confidence            999999999999998765433 23456789999999853 2 244566666   555554 5666776554

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=8e-28  Score=222.45  Aligned_cols=178  Identities=17%  Similarity=0.206  Sum_probs=128.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHh--cCCCCcccccccceeeEEEEeecC----CeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNH--LRNEPFKKCVLLFKMNLYKVTSEP----NSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~--l~h~~i~~~~~~~~v~~~~~~~~~----~~~~   85 (334)
                      +++.+.||+|.+.  |+.||||++.....     .....|.+++..  ++||||        +++++++...    +.+|
T Consensus        47 ~G~~g~V~~~~~~--~~~vavK~~~~~~~-----~~~~~e~~~~~~~~~~h~~i--------~~~~~~~~~~~~~~~~~~  111 (337)
T 3mdy_A           47 KGRYGEVWMGKWR--GEKVAVKVFFTTEE-----ASWFRETEIYQTVLMRHENI--------LGFIAADIKGTGSWTQLY  111 (337)
T ss_dssp             EETTEEEEEEEET--TEEEEEEEEEGGGH-----HHHHHHHHHHTSTTCCCTTB--------CCEEEEEEESCGGGCEEE
T ss_pred             cCCCeEEEEEEEC--CceEEEEEEecccc-----chhhhHHHHHHHHhhcCCCe--------eeEEEEEccCCCCCCceE
Confidence            4678899999875  89999999974322     233446666655  499999        9999999876    7899


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +..+....  .+   ....++.++.|++.||.|||++.        +.....+.|+||||||+|||++.+
T Consensus       112 lv~e~~~~g~L~~~l~~~--~~---~~~~~~~i~~~i~~~l~~lH~~~--------~~~~~~~~ivH~Dikp~Nill~~~  178 (337)
T 3mdy_A          112 LITDYHENGSLYDYLKST--TL---DAKSMLKLAYSSVSGLCHLHTEI--------FSTQGKPAIAHRDLKSKNILVKKN  178 (337)
T ss_dssp             EEECCCTTCBHHHHHHHC--CB---CHHHHHHHHHHHHHHHHHHHSCB--------CSTTCBCCEECSCCCGGGEEECTT
T ss_pred             EEEeccCCCcHHHHhhcc--CC---CHHHHHHHHHHHHHHHHHHHHhh--------hhhccCCCEEecccchHHEEECCC
Confidence            999999987 54433321  22   45556778889999999999981        000011119999999999999999


Q ss_pred             CCEEEEecccccccCCCCC------CccccCcccccccccccc--CCc------ceeeh---hHHHHHcC
Q psy6542         165 GHVRISDLGLACDFSKKKP------HASVESDCILHGYIKKLG--GPF------VSAWQ---TRYAKLFP  217 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~------~~~~~t~~~~~~~v~~~~--~~~------~~~w~---~~~~~l~~  217 (334)
                      +.+||+|||+++.......      ....||+.|++||+....  ...      +|+|+   ++|+++.+
T Consensus       179 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg  248 (337)
T 3mdy_A          179 GTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARR  248 (337)
T ss_dssp             SCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhc
Confidence            9999999999986654432      245789999999985332  222      67777   66666554

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.95  E-value=1.1e-28  Score=225.03  Aligned_cols=185  Identities=17%  Similarity=0.107  Sum_probs=138.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||+|++......  ..+.+.+|+++++.++||||        +++++++.+++.+|+||||+
T Consensus        29 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   98 (302)
T 2j7t_A           29 DGAFGKVYKAKNKETGALAAAKVIETKSEE--ELEDYIVEIEILATCDHPYI--------VKLLGAYYHDGKLWIMIEFC   98 (302)
T ss_dssp             CSTTCCEEEEEETTTCCEEEEEEEC----C--CHHHHHHHHHHHHHCCCTTB--------CCEEEEEECC-CEEEEEECC
T ss_pred             cCCCeEEEEEEEcCCCcEEEEEEecCCCHH--HHHHHHHHHHHHhcCCCCCE--------eeeeeeeeeCCeEEEEEEeC
Confidence            577889999999999999999999765432  23467789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ ++.+.......+   ....++.++.|++.||.|||+++                ++||||||+||+++.++.+||+
T Consensus        99 ~~~~l~~~~~~~~~~~---~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dlkp~Nil~~~~~~~kl~  159 (302)
T 2j7t_A           99 PGGAVDAIMLELDRGL---TEPQIQVVCRQMLEALNFLHSKR----------------IIHRDLKAGNVLMTLEGDIRLA  159 (302)
T ss_dssp             TTEEHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCSGGGEEECTTSCEEEC
T ss_pred             CCCcHHHHHHhhccCC---CHHHHHHHHHHHHHHHHHHhcCC----------------cccCCCCHHHEEECCCCCEEEE
Confidence            998 544433322233   44556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCC--CCCccccCccccccccc------cccC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKK--KPHASVESDCILHGYIK------KLGG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~--~~~~~~~t~~~~~~~v~------~~~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||++......  ......|++.|++||+.      ...+ ..+|+|+   ++|+++ ++..||...+
T Consensus       160 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~-~g~~p~~~~~  226 (302)
T 2j7t_A          160 DFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA-QIEPPHHELN  226 (302)
T ss_dssp             CCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHH-HSSCTTTTSC
T ss_pred             ECCCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHh-cCCCCCccCC
Confidence            99998643221  12345688999999984      2233 4566666   555555 4555665443

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.95  E-value=2.2e-29  Score=229.33  Aligned_cols=188  Identities=15%  Similarity=0.120  Sum_probs=126.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+..+|+.||||.+....... ....+.+|+++++.++||||        +++++++...+.+|+||||+
T Consensus        25 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~   95 (303)
T 2vwi_A           25 SGATAVVQAAYCAPKKEKVAIKRINLEKCQT-SMDELLKEIQAMSQCHHPNI--------VSYYTSFVVKDELWLVMKLL   95 (303)
T ss_dssp             ---CCCEEEEEC----CEEEEECCC-----------------CCCCCCCTTB--------CCEEEEEESSSCEEEEEECC
T ss_pred             cccceEEEEEEECCCCcEEEEEEEEhhhcch-hHHHHHHHHHHHhhcCCCCE--------eeEEEEEeecCCcEEEehhc
Confidence            4667799999999999999999987554322 34467789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          92 SGP-KDQISRSKIN----RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        92 ~g~-l~~l~~~~~~----~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      +|+ +..+......    .........++.++.|++.||.|||+++                ++||||||+||+++.++.
T Consensus        96 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~----------------i~H~dl~p~Nil~~~~~~  159 (303)
T 2vwi_A           96 SGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG----------------QIHRDVKAGNILLGEDGS  159 (303)
T ss_dssp             TTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCSGGGEEECTTCC
T ss_pred             cCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCC----------------CCCCCCChhhEEEcCCCC
Confidence            887 4333222110    1112355667778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC-------CCccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK-------PHASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       167 vkl~DFGla~~~~~~~-------~~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +||+|||++.......       .....||+.|++||+..  . ....+|+|+   ++|+++. +..||...
T Consensus       160 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~  230 (303)
T 2vwi_A          160 VQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELAT-GAAPYHKY  230 (303)
T ss_dssp             EEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHH-SSCTTTTS
T ss_pred             EEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHh-CCCCCccC
Confidence            9999999998664332       23346789999999853  2 345666666   5566655 55576543

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.95  E-value=1.5e-28  Score=222.86  Aligned_cols=184  Identities=18%  Similarity=0.248  Sum_probs=144.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.++.+|+.||||++............+.+|+++++.++||||        +++++++.+.+.+|+||||+
T Consensus        32 ~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------~~~~~~~~~~~~~~lv~e~~  103 (287)
T 2wei_A           32 KGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNI--------MKLFEILEDSSSFYIVGELY  103 (287)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTB--------CCEEEEEECSSEEEEEECCC
T ss_pred             CCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCc--------cEEEEEEeCCCeEEEEEEcc
Confidence            4677899999999999999999998655433345568889999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC---CC
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH---GH  166 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~---~~  166 (334)
                      .|+ + +.+...  ..+   ....++.++.|++.||.|||+++                ++||||||+||+++.+   +.
T Consensus       104 ~~~~L~~~l~~~--~~~---~~~~~~~i~~qi~~~l~~LH~~~----------------i~H~dl~p~NIlv~~~~~~~~  162 (287)
T 2wei_A          104 TGGELFDEIIKR--KRF---SEHDAARIIKQVFSGITYMHKHN----------------IVHRDLKPENILLESKEKDCD  162 (287)
T ss_dssp             CSCBHHHHHHHH--SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEESCSSTTCC
T ss_pred             CCCCHHHHHHhc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCChhhEEEecCCCccc
Confidence            887 4 333322  123   45556777889999999999999                9999999999999764   46


Q ss_pred             EEEEecccccccCCCCC-CccccCccccccccccccCC-cceeeh---hHHHHHcCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKKP-HASVESDCILHGYIKKLGGP-FVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~~~~~-~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      +||+|||++........ ....+++.|++||+....++ .+|+|+   ++|+++. +..||.+.
T Consensus       163 ~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~  225 (287)
T 2wei_A          163 IKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLS-GTPPFYGK  225 (287)
T ss_dssp             EEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHH-SSCSSCCS
T ss_pred             EEEeccCcceeecCCCccccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHh-CCCCCCCC
Confidence            99999999987655443 33457889999998654444 556666   5566555 55566543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.95  E-value=4.7e-28  Score=223.71  Aligned_cols=175  Identities=16%  Similarity=0.164  Sum_probs=138.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeec--CCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSE--PNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~--~~~~~ivm   88 (334)
                      +++.+.||+|.+..+|+.||||+++...     .+.+.+|+++++.++ ||||        +++++++.+  ....++||
T Consensus        46 ~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~E~~~l~~l~~~~~i--------~~~~~~~~~~~~~~~~lv~  112 (330)
T 3nsz_A           46 RGKYSEVFEAINITNNEKVVVKILKPVK-----KKKIKREIKILENLRGGPNI--------ITLADIVKDPVSRTPALVF  112 (330)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEECSCC-----HHHHHHHHHHHHHHTTSTTB--------CCEEEEEECTTTCCEEEEE
T ss_pred             ccCCeEEEEEEECCCCcEEEEEEecccc-----hHHHHHHHHHHHHcCCCCCE--------EEeeeeeccCCCCceEEEE
Confidence            4778899999999999999999997433     345778999999997 9999        999999987  67799999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-C
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-H  166 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-~  166 (334)
                      ||+.|+ +..+..    .+   ....+..++.|++.||.|||+++                |+||||||+|||++.++ .
T Consensus       113 e~~~~~~l~~~~~----~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~Dikp~Nil~~~~~~~  169 (330)
T 3nsz_A          113 EHVNNTDFKQLYQ----TL---TDYDIRFYMYEILKALDYCHSMG----------------IMHRDVKPHNVMIDHEHRK  169 (330)
T ss_dssp             ECCCCCCHHHHGG----GC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEEETTTTE
T ss_pred             eccCchhHHHHHH----hC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeeCCCCHHHEEEcCCCCE
Confidence            999988 433322    22   44455667789999999999999                99999999999999777 8


Q ss_pred             EEEEecccccccCCCC-CCccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK-PHASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       167 vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      +||+|||+|+...... .....|+..|++||+..  . .+..+|+|+   ++|+++.+. .||.
T Consensus       170 ~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~-~p~~  232 (330)
T 3nsz_A          170 LRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRK-EPFF  232 (330)
T ss_dssp             EEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTC-SSSS
T ss_pred             EEEEeCCCceEcCCCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCC-CCcc
Confidence            9999999998765544 34456889999999853  2 344566666   566666554 4553

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.95  E-value=2.8e-28  Score=240.58  Aligned_cols=235  Identities=15%  Similarity=0.051  Sum_probs=165.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+.. +..||||+++.....   .+.+.+|+++|+.++||||        +++++++.+ +.+||||||+
T Consensus       277 ~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpni--------v~~~~~~~~-~~~~lv~e~~  343 (535)
T 2h8h_A          277 QGCFGEVWMGTWNG-TTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEKL--------VQLYAVVSE-EPIYIVTEYM  343 (535)
T ss_dssp             ECSSEEEEEEEETT-TEEEEEEEECTTSSC---HHHHHHHHHHHHHCCCTTB--------CCEEEEECS-SSCEEEECCC
T ss_pred             cCCCeEEEEEEECC-CceEEEEEeCCCCCC---HHHHHHHHHHHHhCCCCCE--------eeEEEEEee-ccceEeeehh
Confidence            46778999999876 467999999865542   3467889999999999999        999999876 6789999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      .|+ + +++.......+   ....++.++.||+.||.|||+++                |+||||||+|||++.++.+||
T Consensus       344 ~~gsL~~~l~~~~~~~l---~~~~~~~i~~qi~~~L~~LH~~~----------------ivHrDlkp~NIll~~~~~~kl  404 (535)
T 2h8h_A          344 SKGSLLDFLKGETGKYL---RLPQLVDMAAQIASGMAYVERMN----------------YVHRDLRAANILVGENLVCKV  404 (535)
T ss_dssp             TTEEHHHHHSHHHHTTC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEECGGGCEEE
T ss_pred             cCCcHHHHHhhcCCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeCCCCCHhhEEEcCCCcEEE
Confidence            987 4 34432221222   45566778889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC---CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKK---PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||+++......   .....++..|++||+.. ..+ ..+|+|+   ++|+++..+..||.+....   +         
T Consensus       405 ~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~---~---------  472 (535)
T 2h8h_A          405 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR---E---------  472 (535)
T ss_dssp             CCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH---H---------
T ss_pred             cccccceecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH---H---------
Confidence            9999998765432   12234567899999743 233 4566666   6677766578787543310   0         


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHh
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKA  311 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~  311 (334)
                                   +...+...  .++.    ....++..+.+  ++..|+..+|..|+ +.++++.|....
T Consensus       473 -------------~~~~i~~~--~~~~----~~~~~~~~l~~--li~~cl~~dP~~RPt~~~l~~~L~~~~  522 (535)
T 2h8h_A          473 -------------VLDQVERG--YRMP----CPPECPESLHD--LMCQCWRKEPEERPTFEYLQAFLEDYF  522 (535)
T ss_dssp             -------------HHHHHHTT--CCCC----CCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred             -------------HHHHHHcC--CCCC----CCCCCCHHHHH--HHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence                         00011000  0011    11234444555  77777888888888 777777776643

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.95  E-value=1.8e-28  Score=221.24  Aligned_cols=233  Identities=15%  Similarity=0.134  Sum_probs=155.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC-CeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP-NSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~-~~~~ivmEy   90 (334)
                      +++...||++.+.  |+.||||+++...    ..+.+.+|+++++.++||||        +++++++.+. +.+|+||||
T Consensus        31 ~G~~g~V~~~~~~--~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~lv~e~   96 (278)
T 1byg_A           31 KGEFGDVMLGDYR--GNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNL--------VQLLGVIVEEKGGLYIVTEY   96 (278)
T ss_dssp             ECSSCEEEEEEET--TEEEEEEECCCCC------HHHHHTHHHHTTCCCTTB--------CCEEEEECCC--CCEEEECC
T ss_pred             cCCCceEEEEEEc--CCEEEEEEecchh----HHHHHHHHHHHHHhCCCCCE--------eeEEEEEEcCCCceEEEEec
Confidence            4667799999874  8899999998543    33567789999999999999        9999987644 579999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+......  .......++.++.|++.||.|||+++                ++||||||+||+++.++.+||
T Consensus        97 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~----------------i~H~dlkp~Nil~~~~~~~~l  158 (278)
T 1byg_A           97 MAKGSLVDYLRSRGR--SVLGGDCLLKFSLDVCEAMEYLEGNN----------------FVHRDLAARNVLVSEDNVAKV  158 (278)
T ss_dssp             CTTEEHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEECTTSCEEE
T ss_pred             CCCCCHHHHHHhccc--ccCCHHHHHHHHHHHHHHHHHHHhCC----------------ccccCCCcceEEEeCCCcEEE
Confidence            9986 4433332211  11245556778889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccccc
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQ  244 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  244 (334)
                      +|||+++...... ....+++.|++||+.. ..+ ..+|+|+   ++|+++..+..||......   +.           
T Consensus       159 ~Dfg~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~---~~-----------  223 (278)
T 1byg_A          159 SDFGLTKEASSTQ-DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK---DV-----------  223 (278)
T ss_dssp             CCCCC-------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG---GH-----------
T ss_pred             eeccccccccccc-cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH---HH-----------
Confidence            9999998665443 2345678899999853 333 4566666   6667666577777543211   00           


Q ss_pred             ccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         245 DLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       245 ~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                 ...+...      ...+.....++.+.+  +...|...+|..|+ +.++++.+...
T Consensus       224 -----------~~~~~~~------~~~~~~~~~~~~l~~--li~~~l~~~p~~Rps~~~l~~~L~~i  271 (278)
T 1byg_A          224 -----------VPRVEKG------YKMDAPDGCPPAVYE--VMKNCWHLDAAMRPSFLQLREQLEHI  271 (278)
T ss_dssp             -----------HHHHTTT------CCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----------HHHHhcC------CCCCCcccCCHHHHH--HHHHHhcCChhhCCCHHHHHHHHHHH
Confidence                       0000000      000112233444455  77788888888888 77777766553

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.95  E-value=2.2e-28  Score=227.44  Aligned_cols=182  Identities=13%  Similarity=0.127  Sum_probs=118.3

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec----CCeEEE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE----PNSHYI   86 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~----~~~~~i   86 (334)
                      .+++.+.||+|.++.+|+.||||++.....      ...+....++.++||||        +++++++..    ++.+|+
T Consensus        38 G~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~e~~~~~~~~~h~~i--------~~~~~~~~~~~~~~~~~~l  103 (336)
T 3fhr_A           38 GLGVNGKVLECFHRRTGQKCALKLLYDSPK------ARQEVDHHWQASGGPHI--------VCILDVYENMHHGKRCLLI  103 (336)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEEEEESSHH------HHHHHHHHHHHTTSTTB--------CCEEEEEEEEETTEEEEEE
T ss_pred             eeCCCeEEEEEEECCCCCEEEEEEecCcHH------HHHHHHHHHHhcCCCCh--------HHHHHHHhhccCCCceEEE
Confidence            357888999999999999999999974221      12223345677899999        999999875    456899


Q ss_pred             EEEccCCC-hhHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          87 IGVRQSGP-KDQISRSK-INRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~-~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      ||||++|+ +..+.... ...+   ....++.++.|++.||.|||+++                |+||||||+|||++.+
T Consensus       104 v~e~~~gg~L~~~l~~~~~~~l---~~~~~~~i~~ql~~~l~~LH~~~----------------ivH~dlkp~NIll~~~  164 (336)
T 3fhr_A          104 IMECMEGGELFSRIQERGDQAF---TEREAAEIMRDIGTAIQFLHSHN----------------IAHRDVKPENLLYTSK  164 (336)
T ss_dssp             EEECCTTEEHHHHHHTC-CCCC---BHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEESCS
T ss_pred             EEeccCCCCHHHHHHhcCCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCCCCHHHEEEEec
Confidence            99999997 43333322 1223   45566777889999999999999                9999999999999764


Q ss_pred             ---CCEEEEecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         165 ---GHVRISDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       165 ---~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                         +.+||+|||+++...........+|+.|++||+.. .. ...+|+|+   ++|+++. +..||.+..
T Consensus       165 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~  233 (336)
T 3fhr_A          165 EKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLC-GFPPFYSNT  233 (336)
T ss_dssp             STTCCEEECCCTTCEEC----------------------CHHHHHHHHHHHHHHHHHHHH-SSCCC----
T ss_pred             CCCceEEEeccccceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHH-CCCCCCCcc
Confidence               55999999999987766666677899999999853 22 34566666   5555555 566776554

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.95  E-value=7.2e-28  Score=217.26  Aligned_cols=183  Identities=14%  Similarity=0.066  Sum_probs=139.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+. ++..||||.++.....   .+.+.+|+++++.++||||        +++++++. ++.+|+||||+
T Consensus        23 ~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h~~i--------~~~~~~~~-~~~~~~v~e~~   89 (279)
T 1qpc_A           23 AGQFGEVWMGYYN-GHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRL--------VRLYAVVT-QEPIYIITEYM   89 (279)
T ss_dssp             EETTEEEEEEEET-TTEEEEEEEECTTSSC---HHHHHHHHHHHHHCCCTTB--------CCEEEEEC-SSSCEEEEECC
T ss_pred             CCCCeEEEEEEEc-CCcEEEEEEecCCccc---HHHHHHHHHHHHhCCCcCc--------ceEEEEEc-CCCcEEEEecC
Confidence            4677899999876 4778999999865442   3467789999999999999        99999986 45689999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +..+......  .......++.++.|++.||.|||+++                ++||||||+||++++++.+||+
T Consensus        90 ~~~~L~~~l~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~----------------i~H~dikp~Nil~~~~~~~kl~  151 (279)
T 1qpc_A           90 ENGSLVDFLKTPSG--IKLTINKLLDMAAQIAEGMAFIEERN----------------YIHRDLRAANILVSDTLSCKIA  151 (279)
T ss_dssp             TTCBHHHHTTSHHH--HTCCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECTTSCEEEC
T ss_pred             CCCCHHHHHhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHCC----------------eeccCCCHhhEEEcCCCCEEEC
Confidence            877 5443332211  12245566778889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC---CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP---HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||+++.......   ....++..|++||+.. .. ...+|+|+   ++|+++..+..||.+.
T Consensus       152 Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  214 (279)
T 1qpc_A          152 DFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM  214 (279)
T ss_dssp             CCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             CCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCccc
Confidence            9999987655432   2234567899999853 22 34566666   6677766577787553

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.95  E-value=3.4e-28  Score=221.09  Aligned_cols=175  Identities=18%  Similarity=0.154  Sum_probs=132.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-----------
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-----------   80 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-----------   80 (334)
                      +++.+.||+|.+..+|+.||||.+...   ....+.+.+|+++++.++||||        +++++++.+           
T Consensus        16 ~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~h~~i--------~~~~~~~~~~~~~~~~~~~~   84 (303)
T 1zy4_A           16 QGAFGQVVKARNALDSRYYAIKKIRHT---EEKLSTILSEVMLLASLNHQYV--------VRYYAAWLERRNFVKPMTAV   84 (303)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEEE---HHHHHHHHHHHHHHTTCCCTTB--------CCEEEEEEECCCCCC-----
T ss_pred             cCCcEEEEEEEEcCCCeEEEEEEEecc---HHHHHHHHHHHHHHHhcCchHH--------HHHHHHHHhhcchhhhhccc
Confidence            477889999999999999999999742   2344567889999999999999        999988764           


Q ss_pred             --CCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCC
Q psy6542          81 --PNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPA  157 (334)
Q Consensus        81 --~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~  157 (334)
                        .+.+|+||||++|+ +..+........   ....++.++.|++.||.|||+++                ++||||||+
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~~l~~LH~~~----------------i~H~dlkp~  145 (303)
T 1zy4_A           85 KKKSTLFIQMEYCENGTLYDLIHSENLNQ---QRDEYWRLFRQILEALSYIHSQG----------------IIHRDLKPM  145 (303)
T ss_dssp             -CEEEEEEEEECCCSCBHHHHHHHSCGGG---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGG
T ss_pred             ccCCceEEEEecCCCCCHHHhhhcccccc---chHHHHHHHHHHHHHHHHHHhCC----------------eecccCCHH
Confidence              45689999999886 544433322122   34556677889999999999999                999999999


Q ss_pred             ceeeCCCCCEEEEecccccccCCC----------------CCCccccCccccccccccc---cCCcceeeh---hHHHHH
Q psy6542         158 NILLDEHGHVRISDLGLACDFSKK----------------KPHASVESDCILHGYIKKL---GGPFVSAWQ---TRYAKL  215 (334)
Q Consensus       158 NiLl~~~~~vkl~DFGla~~~~~~----------------~~~~~~~t~~~~~~~v~~~---~~~~~~~w~---~~~~~l  215 (334)
                      ||+++.++.+||+|||+++.....                ......|++.|++||+...   ....+|+|+   ++|+++
T Consensus       146 Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~  225 (303)
T 1zy4_A          146 NIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI  225 (303)
T ss_dssp             GEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHH
T ss_pred             hEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHH
Confidence            999999999999999999866432                1234567899999998532   244566666   667776


Q ss_pred             c
Q psy6542         216 F  216 (334)
Q Consensus       216 ~  216 (334)
                      +
T Consensus       226 ~  226 (303)
T 1zy4_A          226 Y  226 (303)
T ss_dssp             S
T ss_pred             h
Confidence            5

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.95  E-value=1.8e-28  Score=226.62  Aligned_cols=241  Identities=10%  Similarity=-0.002  Sum_probs=163.1

Q ss_pred             CCCceEEEece-----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPS-----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~-----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +++.+.||+|.     +..+++.||||.+..... ......+.+|+.+++.++||||        +++++++.+++..|+
T Consensus        40 ~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~l  110 (327)
T 2yfx_A           40 HGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNI--------VRCIGVSLQSLPRFI  110 (327)
T ss_dssp             --CSSCEEEEEC--------CCEEEEEECCSSCC-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCEE
T ss_pred             CCCCeeEEEEEEcCCCCCCccceEEEEEeccccc-hhhHHHHHHHHHHHhhCCCCCC--------CeEEEEEcCCCCcEE
Confidence            56778999998     667899999999975443 2334567889999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          87 IGVRQSGP-KDQISRSKIN---RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~---~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      ||||++|+ +..+......   .........++.++.|++.||.|||+++                |+||||||+|||++
T Consensus       111 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~----------------i~H~dlkp~NIli~  174 (327)
T 2yfx_A          111 LMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH----------------FIHRDIAARNCLLT  174 (327)
T ss_dssp             EEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEES
T ss_pred             EEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC----------------eecCcCCHhHEEEe
Confidence            99999887 5443332211   0012345566778889999999999999                99999999999998


Q ss_pred             CC---CCEEEEecccccccCCCC----CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCc
Q psy6542         163 EH---GHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSK  230 (334)
Q Consensus       163 ~~---~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~  230 (334)
                      .+   ..+||+|||+++......    .....+++.|++||+.. .. ...+|+|+   ++|+++..+..||........
T Consensus       175 ~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~  254 (327)
T 2yfx_A          175 CPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEV  254 (327)
T ss_dssp             CSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHH
T ss_pred             cCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHH
Confidence            54   469999999998553332    22345688899999842 33 44566666   667776667777754331100


Q ss_pred             ccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         231 PELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                      .                     ..+....          ..+.....++.+..  +...|+..+|..|+ +.++++++..
T Consensus       255 ~---------------------~~~~~~~----------~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~~ll~~l~~  301 (327)
T 2yfx_A          255 L---------------------EFVTSGG----------RMDPPKNCPGPVYR--IMTQCWQHQPEDRPNFAIILERIEY  301 (327)
T ss_dssp             H---------------------HHHHTTC----------CCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             H---------------------HHHhcCC----------CCCCCCCCCHHHHH--HHHHHhcCChhhCcCHHHHHHHHHH
Confidence            0                     0000000          00011223334444  77888888899888 8888887765


Q ss_pred             H
Q psy6542         310 K  310 (334)
Q Consensus       310 ~  310 (334)
                      .
T Consensus       302 ~  302 (327)
T 2yfx_A          302 C  302 (327)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.95  E-value=7.4e-28  Score=220.90  Aligned_cols=235  Identities=16%  Similarity=0.124  Sum_probs=156.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|...  ++.||||.+....    ..+.+.+|+++++.++||||        +++++++.  +..|+||||+
T Consensus        18 ~G~~g~V~~~~~~--~~~vavK~~~~~~----~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~--~~~~lv~e~~   81 (307)
T 2eva_A           18 RGAFGVVCKAKWR--AKDVAIKQIESES----ERKAFIVELRQLSRVNHPNI--------VKLYGACL--NPVCLVMEYA   81 (307)
T ss_dssp             CCSSSEEEEEEET--TEEEEEEECSSTT----HHHHHHHHHHHHHHCCCTTB--------CCEEEBCT--TTTEEEEECC
T ss_pred             cCCCceEEEEEEC--CeeEEEEEecChh----HHHHHHHHHHHHhcCCCCCc--------CeEEEEEc--CCcEEEEEcC
Confidence            5777899999874  7889999987432    34567889999999999999        99999886  3489999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc---CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC-
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS---ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH-  166 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~---~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~-  166 (334)
                      +|+ +..+.... ..........++.++.|++.||.|||+   ++                |+||||||+||+++.++. 
T Consensus        82 ~~~~L~~~l~~~-~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~----------------ivH~dlkp~NIll~~~~~~  144 (307)
T 2eva_A           82 EGGSLYNVLHGA-EPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKA----------------LIHRDLKPPNLLLVAGGTV  144 (307)
T ss_dssp             TTCBHHHHHHCS-SSEECCCHHHHHHHHHHHHHHHHHHHTCSSSC----------------CCCCCCSGGGEEEETTTTE
T ss_pred             CCCCHHHHHhcc-CCCCccCHHHHHHHHHHHHHHHHHHHhCCCCC----------------eecCCCChhHEEEeCCCCE
Confidence            887 54433322 122223456667788899999999999   67                999999999999998887 


Q ss_pred             EEEEecccccccCCCCCCccccCccccccccccc-c-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         167 VRISDLGLACDFSKKKPHASVESDCILHGYIKKL-G-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~-~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +||+|||+++...... ....||+.|++||+... . ...+|+|+   ++|+++. +..||...... ...         
T Consensus       145 ~kl~Dfg~~~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~-~~~---------  212 (307)
T 2eva_A          145 LKICDFGTACDIQTHM-TNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVIT-RRKPFDEIGGP-AFR---------  212 (307)
T ss_dssp             EEECCCCC-------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHH-TCCTTTTTCSS-HHH---------
T ss_pred             EEEccccccccccccc-ccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHH-CCCCchhhCcc-HHH---------
Confidence            7999999998665432 33468999999998532 3 44566666   5566655 55566432210 000         


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHhC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKAG  312 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~~  312 (334)
                               ....+..   .       ...+....+++.+.+  +...|...+|..|+ +.++++.+.....
T Consensus       213 ---------~~~~~~~---~-------~~~~~~~~~~~~l~~--li~~~l~~dp~~Rps~~ell~~L~~~~~  263 (307)
T 2eva_A          213 ---------IMWAVHN---G-------TRPPLIKNLPKPIES--LMTRCWSKDPSQRPSMEEIVKIMTHLMR  263 (307)
T ss_dssp             ---------HHHHHHT---T-------CCCCCBTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHGG
T ss_pred             ---------HHHHHhc---C-------CCCCcccccCHHHHH--HHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence                     0000000   0       001112334444455  77788888899999 8888887776543

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.95  E-value=8.3e-28  Score=234.16  Aligned_cols=184  Identities=14%  Similarity=0.049  Sum_probs=140.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++...||+|.+..+|+.||||++......    ..+.+|+++++.++|+++       +..+..++...+..||||||+
T Consensus        17 ~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~----~~~~~E~~il~~L~~~~~-------i~~i~~~~~~~~~~~lvme~~   85 (483)
T 3sv0_A           17 SGSFGEIYLGTNIQTNEEVAIKLENVKTKH----PQLLYESKIYRILQGGTG-------IPNVRWFGVEGDYNVLVMDLL   85 (483)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEETTCSS----CCHHHHHHHHHHTTTSTT-------CCCEEEEEEETTEEEEEEECC
T ss_pred             eCCCEEEEEEEECCCCcEEEEEEecccccc----HHHHHHHHHHHHhcCCCC-------CCeEEEEEeeCCEEEEEEECC
Confidence            467889999999999999999998865442    346779999999998654       156667777888999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee---CCCCCEE
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL---DEHGHVR  168 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl---~~~~~vk  168 (334)
                      .+.+..+.......+   ....++.++.||+.||.|||+++                |+||||||+|||+   +.++.+|
T Consensus        86 g~sL~~ll~~~~~~l---~~~~~~~i~~qi~~aL~yLH~~g----------------IvHrDIKP~NILl~~~~~~~~vk  146 (483)
T 3sv0_A           86 GPSLEDLFNFCSRKL---SLKTVLMLADQMINRVEFVHSKS----------------FLHRDIKPDNFLMGLGRRANQVY  146 (483)
T ss_dssp             CCBHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECCGGGTTCEE
T ss_pred             CCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EeecccCcceEEEecCCCCCeEE
Confidence            655555444322233   45566778889999999999999                9999999999999   5789999


Q ss_pred             EEecccccccCCCCC---------CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP---------HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~~---------~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+++.......         ....||..|++||+.. ..++ .+|+|+   ++|+++. +..||.+..
T Consensus       147 L~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~ellt-G~~Pf~~~~  217 (483)
T 3sv0_A          147 IIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLR-GSLPWQGLK  217 (483)
T ss_dssp             ECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCTTSSCC
T ss_pred             EEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHh-CCCCCcccc
Confidence            999999987655432         2557899999999843 3345 455555   5566655 667876654

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.95  E-value=9.8e-28  Score=221.70  Aligned_cols=252  Identities=13%  Similarity=0.048  Sum_probs=166.3

Q ss_pred             CCCceEEEece----eCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC--eEE
Q psy6542          12 RVSKWRVKPPS----LKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN--SHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~----~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~--~~~   85 (334)
                      +++.+.||+|.    +..+|+.||||.+.....  ...+.+.+|+++++.++||||        +++++++...+  .++
T Consensus        51 ~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~~i--------v~~~~~~~~~~~~~~~  120 (326)
T 2w1i_A           51 KGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE--EHLRDFEREIEILKSLQHDNI--------VKYKGVCYSAGRRNLK  120 (326)
T ss_dssp             CCSSEEEEEEEECTTSSSCCEEEEEEEESSCCS--HHHHHHHHHHHHHHTCCCTTB--------CCEEEEECC----CCE
T ss_pred             cCCCeEEEEEEeccccCCCceEEEEEEeccCCH--HHHHHHHHHHHHHHhCCCCCe--------eeEEEEEEecCCCceE
Confidence            46778999998    577899999999986433  344578899999999999999        99999987543  789


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +..+.......+   ....++.++.|++.||.|||+++                |+||||||+||+++.+
T Consensus       121 lv~e~~~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~dikp~NIli~~~  181 (326)
T 2w1i_A          121 LIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQICKGMEYLGTKR----------------YIHRDLATRNILVENE  181 (326)
T ss_dssp             EEECCCTTCBHHHHHHHSTTSS---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEEEET
T ss_pred             EEEECCCCCCHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EeccCCCcceEEEcCC
Confidence            999999887 544433322223   44556777889999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCC-----CccccCccccccccccc--cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         165 GHVRISDLGLACDFSKKKP-----HASVESDCILHGYIKKL--GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~~--~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      +.+||+|||+++.......     ....++..|++||+...  ....+|+|+   ++|+++.+.. |+...     ....
T Consensus       182 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~-~~~~~-----~~~~  255 (326)
T 2w1i_A          182 NRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE-KSKSP-----PAEF  255 (326)
T ss_dssp             TEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTC-GGGSH-----HHHH
T ss_pred             CcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCC-CCCCC-----HHHH
Confidence            9999999999987755432     22345677999998432  244566666   6667766543 32111     0000


Q ss_pred             hcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         235 FMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                       ......   ..........+...+...      ...+....+++.+..  +...|...+|..|+ +.++++.+...
T Consensus       256 -~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~--li~~cl~~dP~~Rps~~el~~~L~~l  320 (326)
T 2w1i_A          256 -MRMIGN---DKQGQMIVFHLIELLKNN------GRLPRPDGCPDEIYM--IMTECWNNNVNQRPSFRDLALRVDQI  320 (326)
T ss_dssp             -HHHHCT---TCCTHHHHHHHHHHHHTT------CCCCCCTTCCHHHHH--HHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred             -HHhhcc---ccchhhhHHHHHHHhhcC------CCCCCCCcccHHHHH--HHHHHcCCChhhCcCHHHHHHHHHHH
Confidence             000000   000000011111111110      111122344455555  77888888999999 77777776654

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.95  E-value=4.8e-28  Score=220.38  Aligned_cols=221  Identities=12%  Similarity=0.066  Sum_probs=155.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++...||+|.+..+|+.||||++..... +....+.+.+|+.+++.++||||        +++++++.+++.+|+||||
T Consensus        41 ~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i--------v~~~~~~~~~~~~~lv~e~  112 (286)
T 3uqc_A           41 GVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGV--------ARVLDVVHTRAGGLVVAEW  112 (286)
T ss_dssp             BSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTB--------CCEEEEEEETTEEEEEEEC
T ss_pred             ccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCc--------ceeeEEEEECCcEEEEEEe
Confidence            56778999999999999999999987655 34455678899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++|+ +..+....   .   .....+.++.|++.||.|||+++                |+||||||+|||++.+|.+||
T Consensus       113 ~~g~~L~~~l~~~---~---~~~~~~~i~~ql~~aL~~lH~~g----------------ivH~Dikp~NIll~~~g~~kl  170 (286)
T 3uqc_A          113 IRGGSLQEVADTS---P---SPVGAIRAMQSLAAAADAAHRAG----------------VALSIDHPSRVRVSIDGDVVL  170 (286)
T ss_dssp             CCEEEHHHHHTTC---C---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCSGGGEEEETTSCEEE
T ss_pred             cCCCCHHHHHhcC---C---ChHHHHHHHHHHHHHHHHHHHCC----------------CccCCCCcccEEEcCCCCEEE
Confidence            9987 54443322   1   22235667889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCccccccccccccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccccccc
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKKLGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQDL  246 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  246 (334)
                      +++|..                  ++     .+..+|+|+   ++|++++ +..||.+.+......... ......... 
T Consensus       171 ~~~~~~------------------~~-----~~~~~Di~slG~il~ellt-g~~Pf~~~~~~~~~~~~~-~~~~~~~~~-  224 (286)
T 3uqc_A          171 AYPATM------------------PD-----ANPQDDIRGIGASLYALLV-NRWPLPEAGVRSGLAPAE-RDTAGQPIE-  224 (286)
T ss_dssp             CSCCCC------------------TT-----CCHHHHHHHHHHHHHHHHH-SEECSCCCSBCCCSEECC-BCTTSCBCC-
T ss_pred             Eecccc------------------CC-----CCchhHHHHHHHHHHHHHH-CCCCCCcCCcchhhHHHH-HHhccCCCC-
Confidence            866543                  11     234567777   5555554 666887665322111100 000000000 


Q ss_pred             ccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccchhHHHHHHHHHHhCC
Q psy6542         247 ITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLGSMARKAGK  313 (334)
Q Consensus       247 ~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~lL~~l~~~~~~  313 (334)
                                             +....+.+++.+.+  +...|+..+|..|.+.++++.+.+....
T Consensus       225 -----------------------~~~~~~~~~~~l~~--li~~~l~~dP~~Rs~~el~~~L~~~~~~  266 (286)
T 3uqc_A          225 -----------------------PADIDRDIPFQISA--VAARSVQGDGGIRSASTLLNLMQQATAV  266 (286)
T ss_dssp             -----------------------HHHHCTTSCHHHHH--HHHHHHCTTSSCCCHHHHHHHHHHHHC-
T ss_pred             -----------------------hhhcccCCCHHHHH--HHHHHcccCCccCCHHHHHHHHHHHhcc
Confidence                                   00012234445555  6666666667777888888888876543

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.95  E-value=1e-28  Score=230.80  Aligned_cols=250  Identities=10%  Similarity=0.028  Sum_probs=161.5

Q ss_pred             CCCceEEEeceeCCC--------CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCccccc-------ccceeeEEE
Q psy6542          12 RVSKWRVKPPSLKPL--------GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCV-------LLFKMNLYK   76 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~--------~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~-------~~~~v~~~~   76 (334)
                      +++.+.||+|.++.|        ++.||||++...       ..+.+|+++++.++||||.+..       ...++++++
T Consensus        52 ~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-------~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~  124 (352)
T 2jii_A           52 RDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-------GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMG  124 (352)
T ss_dssp             EETTEEEEEEEECC-----------CEEEEEEETT-------STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCE
T ss_pred             CCCCeEEEEEeecCCccccccccCceEEEEEeccc-------chHHHHHHHHHHhcccchhhhhhhhccCCccCccchhh
Confidence            467789999999984        899999999843       4577899999999999982211       111233677


Q ss_pred             Eeec-CCeEEEEEEccCCChhHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCC
Q psy6542          77 VTSE-PNSHYIIGVRQSGPKDQISRSK-INRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDL  154 (334)
Q Consensus        77 ~~~~-~~~~~ivmEy~~g~l~~l~~~~-~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDl  154 (334)
                      ++.. ++.+|+||||+.|++..+.... ...+   ....++.++.||+.||.|||+++                |+||||
T Consensus       125 ~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l---~~~~~~~i~~qi~~~L~~LH~~~----------------ivH~Di  185 (352)
T 2jii_A          125 FGVHQDKYRFLVLPSLGRSLQSALDVSPKHVL---SERSVLQVACRLLDALEFLHENE----------------YVHGNV  185 (352)
T ss_dssp             EEEETTTEEEEEEECCCEEHHHHHHHSGGGCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCSCC
T ss_pred             ccccCCcEEEEEecCCCcCHHHHHHhCCcCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccCCCC
Confidence            7765 7889999999944454443332 1233   45566778889999999999999                999999


Q ss_pred             CCCceeeCCCC--CEEEEecccccccCCCC---------CCccccCccccccccccc-cCC-cceeeh---hHHHHHcCC
Q psy6542         155 KPANILLDEHG--HVRISDLGLACDFSKKK---------PHASVESDCILHGYIKKL-GGP-FVSAWQ---TRYAKLFPN  218 (334)
Q Consensus       155 Kp~NiLl~~~~--~vkl~DFGla~~~~~~~---------~~~~~~t~~~~~~~v~~~-~~~-~~~~w~---~~~~~l~~~  218 (334)
                      ||+|||++.++  .+||+|||+++.+....         .....||+.|++||+... .++ .+|+|+   ++|++++ +
T Consensus       186 kp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g  264 (352)
T 2jii_A          186 TAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLY-G  264 (352)
T ss_dssp             CGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-S
T ss_pred             CHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHh-C
Confidence            99999999998  89999999998664332         133468999999998533 344 566666   5666655 5


Q ss_pred             CCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccc
Q psy6542         219 RLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHK  298 (334)
Q Consensus       219 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r  298 (334)
                      ..||.+....  .+.                  ...........+.. +.........+++.+.+  +...|...+|..|
T Consensus       265 ~~pf~~~~~~--~~~------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~--li~~~l~~dp~~R  321 (352)
T 2jii_A          265 FLPWTNCLPN--TED------------------IMKQKQKFVDKPGP-FVGPCGHWIRPSETLQK--YLKVVMALTYEEK  321 (352)
T ss_dssp             CCTTGGGTTC--HHH------------------HHHHHHHHHHSCCC-EECTTSCEECCCHHHHH--HHHHHHTCCTTCC
T ss_pred             CCCcccCCcC--HHH------------------HHHHHHhccCChhh-hhhhccccCCCcHHHHH--HHHHHHhCChhhC
Confidence            5566443210  000                  00000001111100 00000011233445555  7788888889999


Q ss_pred             h-hHHHHHHHHHHh
Q psy6542         299 C-SQELLGSMARKA  311 (334)
Q Consensus       299 ~-~~~lL~~l~~~~  311 (334)
                      + +.++++.+....
T Consensus       322 ps~~~l~~~L~~~~  335 (352)
T 2jii_A          322 PPYAMLRNNLEALL  335 (352)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            8 777766665543

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.95  E-value=6.4e-28  Score=228.06  Aligned_cols=188  Identities=12%  Similarity=0.075  Sum_probs=140.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.++.+|+.||||+++..   ......+..|+.+++.++ |+++   ...+++++++++...+.+|+||||
T Consensus        64 ~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~---~~~~iv~~~~~~~~~~~~~lv~e~  137 (382)
T 2vx3_A           64 KGSFGQVVKAYDRVEQEWVAIKIIKNK---KAFLNQAQIEVRLLELMNKHDTE---MKYYIVHLKRHFMFRNHLCLVFEM  137 (382)
T ss_dssp             EETTEEEEEEEETTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHCSSG---GGGGBCCEEEEEEETTEEEEEEEC
T ss_pred             ecCCEEEEEEEEcCCCcEEEEEEEecc---HHHHHHHHHHHHHHHHHHhcccc---cceeEEEeeeeeccCCceEEEEec
Confidence            466779999999999999999999843   224456677999999886 5542   122239999999999999999999


Q ss_pred             cCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc--CCCCCchhhhhhcCCCCcEEeeCCCCCceeeC--CCC
Q psy6542          91 QSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS--ALNKNPLIAIFLTLSVPCLHFRDLKPANILLD--EHG  165 (334)
Q Consensus        91 ~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~--~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~--~~~  165 (334)
                      ++|++ +.+.......+   .......++.|++.||.|||.  .+                |+||||||+|||++  .++
T Consensus       138 ~~~~L~~~l~~~~~~~~---~~~~~~~i~~qi~~al~~lH~~~~~----------------ivHrDlkp~NIll~~~~~~  198 (382)
T 2vx3_A          138 LSYNLYDLLRNTNFRGV---SLNLTRKFAQQMCTALLFLATPELS----------------IIHCDLKPENILLCNPKRS  198 (382)
T ss_dssp             CCCBHHHHHHHTTTSCC---CHHHHHHHHHHHHHHHHHHTSTTTC----------------EECCCCSGGGEEESSTTSC
T ss_pred             CCCCHHHHHhhcCcCCC---CHHHHHHHHHHHHHHHHHhccCCCC----------------EEcCCCCcccEEEecCCCC
Confidence            99884 44433322223   445556777899999999995  56                99999999999995  468


Q ss_pred             CEEEEecccccccCCCCCCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+|+..... .....||+.|++||+.. ..+ ..+|+|+   ++|++++ +.+||.+.+
T Consensus       199 ~~kL~DFG~a~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt-g~~pf~~~~  262 (382)
T 2vx3_A          199 AIKIVDFGSSCQLGQR-IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHT-GEPLFSGAN  262 (382)
T ss_dssp             CEEECCCTTCEETTCC-CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             cEEEEeccCceecccc-cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCC
Confidence            8999999999877554 34567899999999853 234 4566666   5566555 667887655

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.95  E-value=4.7e-28  Score=244.29  Aligned_cols=237  Identities=11%  Similarity=0.043  Sum_probs=164.5

Q ss_pred             CCCceEEEeceeCCC---CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPL---GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~---~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +|+.+.||+|.+..+   +..||||.++.... ....+.+.+|+.+++.++||||        +++++++. ++.+|+||
T Consensus       400 ~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~HpnI--------v~l~~~~~-~~~~~lv~  469 (656)
T 2j0j_A          400 EGQFGDVHQGIYMSPENPAMAVAIKTCKNCTS-DSVREKFLQEALTMRQFDHPHI--------VKLIGVIT-ENPVWIIM  469 (656)
T ss_dssp             CCSSCCEEEEEECCSSSCCEEEEEEECSSTTC-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEC-SSSCEEEE
T ss_pred             eCCCEEEEEEEEecCCCccEEEEEEEecccCC-HHHHHHHHHHHHHHHhCCCCCC--------CeEEEEEe-cCceEEEE
Confidence            567789999988654   45699998875443 3345678899999999999999        99999985 46689999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||++|+ +..+.......+   .....+.++.|++.||.|||+++                |+||||||+|||++.++.+
T Consensus       470 E~~~~g~L~~~l~~~~~~l---~~~~~~~i~~qi~~aL~~LH~~g----------------ivHrDikp~NILl~~~~~v  530 (656)
T 2j0j_A          470 ELCTLGELRSFLQVRKFSL---DLASLILYAYQLSTALAYLESKR----------------FVHRDIAARNVLVSSNDCV  530 (656)
T ss_dssp             ECCTTCBHHHHHHHTTTTC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEEEETTEE
T ss_pred             EcCCCCcHHHHHHhccCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccccccchHhEEEeCCCCE
Confidence            999987 544433222122   45556677889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCC---CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccc
Q psy6542         168 RISDLGLACDFSKKKP---HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQI  239 (334)
Q Consensus       168 kl~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  239 (334)
                      ||+|||+++.......   ....+++.|++||+.. ..++ .+|+|+   ++|++++.+..||.+....   +       
T Consensus       531 kL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~---~-------  600 (656)
T 2j0j_A          531 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN---D-------  600 (656)
T ss_dssp             EECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---H-------
T ss_pred             EEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH---H-------
Confidence            9999999987655432   2234567899999853 3344 555566   6777877788887654311   0       


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                     +...+...      ...+..+.+++.+..  +...|...+|..|+ +.++++.+...
T Consensus       601 ---------------~~~~i~~~------~~~~~~~~~~~~l~~--li~~~l~~dP~~RPs~~el~~~L~~i  649 (656)
T 2j0j_A          601 ---------------VIGRIENG------ERLPMPPNCPPTLYS--LMTKCWAYDPSRRPRFTELKAQLSTI  649 (656)
T ss_dssp             ---------------HHHHHHHT------CCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ---------------HHHHHHcC------CCCCCCccccHHHHH--HHHHHcCCChhHCcCHHHHHHHHHHH
Confidence                           00001000      001112334444555  77778888888888 77777776653

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.95  E-value=3e-28  Score=224.77  Aligned_cols=183  Identities=15%  Similarity=0.153  Sum_probs=143.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcch----HHhhhHHHHHHHHHhcCC--CCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHES----RVAKWRPYIQEIFNHLRN--EPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~----~~~~~~~~E~~il~~l~h--~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++.+.||+|.+..+|+.||||++.......    ...+.+.+|+.+++.++|  +||        +++++++..++.++
T Consensus        53 ~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i--------~~~~~~~~~~~~~~  124 (320)
T 3a99_A           53 SGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGV--------IRLLDWFERPDSFV  124 (320)
T ss_dssp             SSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSB--------CCEEEEEECSSEEE
T ss_pred             eCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCc--------eEEEEEEecCCcEE
Confidence            5778899999999999999999998654321    123466779999999974  999        99999999999999


Q ss_pred             EEEEccCC-C-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC-
Q psy6542          86 IIGVRQSG-P-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD-  162 (334)
Q Consensus        86 ivmEy~~g-~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~-  162 (334)
                      +||||+.+ + +..+.... ..+   ....++.++.|++.||.|||+++                |+||||||+|||++ 
T Consensus       125 lv~e~~~~~~~L~~~l~~~-~~l---~~~~~~~i~~qi~~~L~~LH~~~----------------ivH~Dlkp~NIll~~  184 (320)
T 3a99_A          125 LILERPEPVQDLFDFITER-GAL---QEELARSFFWQVLEAVRHCHNCG----------------VLHRDIKDENILIDL  184 (320)
T ss_dssp             EEEECCSSEEEHHHHHHHH-CSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEEET
T ss_pred             EEEEcCCCCccHHHHHhcc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cEeCCCCHHHEEEeC
Confidence            99999986 3 43332221 123   44556677889999999999999                99999999999998 


Q ss_pred             CCCCEEEEecccccccCCCCCCccccCccccccccccc-c-CC-cceeeh---hHHHHHcCCCCCCC
Q psy6542         163 EHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKL-G-GP-FVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~-~-~~-~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      +++.+||+|||+++...........||+.|++||+... . ++ .+|+|+   ++|+++. +..||.
T Consensus       185 ~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~-g~~pf~  250 (320)
T 3a99_A          185 NRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVC-GDIPFE  250 (320)
T ss_dssp             TTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHH-SSCSCC
T ss_pred             CCCCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHH-CCCCCC
Confidence            77899999999999887766666778999999998532 2 23 456666   5666655 555664

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.95  E-value=5.9e-28  Score=224.55  Aligned_cols=189  Identities=13%  Similarity=0.093  Sum_probs=142.0

Q ss_pred             CCCceEEEeceeCCCC-CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLG-FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~-~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+..++ +.||||+++...   .....+.+|+++++.++|++..  ....++.+++++...+.+|+||||
T Consensus        29 ~G~~g~V~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~lv~e~  103 (355)
T 2eu9_A           29 EGTFGKVVECLDHARGKSQVALKIIRNVG---KYREAARLEINVLKKIKEKDKE--NKFLCVLMSDWFNFHGHMCIAFEL  103 (355)
T ss_dssp             EETTEEEEEEEETTTTTEEEEEEEECSCH---HHHHHHHHHHHHHHHHHHHCTT--SCSCBCCEEEEEEETTEEEEEEEC
T ss_pred             ccCCeEEEEEEecCCCceEEEEEEEcccc---cchhHHHHHHHHHHHHhhcCCC--CceeEEEeeeeeeeCCeEEEEEec
Confidence            4677899999998887 689999997432   2445677899999999887720  011128999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee--------
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL--------  161 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl--------  161 (334)
                      ++++ ++.+.......+   ....++.++.||+.||.|||+++                |+||||||+|||+        
T Consensus       104 ~~~~l~~~l~~~~~~~~---~~~~~~~i~~qi~~~L~~lH~~~----------------ivH~Dlkp~NIll~~~~~~~~  164 (355)
T 2eu9_A          104 LGKNTFEFLKENNFQPY---PLPHVRHMAYQLCHALRFLHENQ----------------LTHTDLKPENILFVNSEFETL  164 (355)
T ss_dssp             CCCBHHHHHHHTTTCCC---CHHHHHHHHHHHHHHHHHHHTTT----------------EECCCCCGGGEEESCCCEEEE
T ss_pred             cCCChHHHHHhccCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------cccCCCCHHHEEEeccccccc
Confidence            9888 444443322233   45556677889999999999999                9999999999999        


Q ss_pred             -----------CCCCCEEEEecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         162 -----------DEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       162 -----------~~~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                                 +.++.+||+|||+++..... .....||+.|++||+.. .. +..+|+|+   ++|++++ +..||.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~  242 (355)
T 2eu9_A          165 YNEHKSCEEKSVKNTSIRVADFGSATFDHEH-HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYR-GFTLFQTH  242 (355)
T ss_dssp             ECCC-CCCEEEESCCCEEECCCTTCEETTSC-CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSCCCS
T ss_pred             ccccccccccccCCCcEEEeecCcccccccc-ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Confidence                       56788999999999865443 34457899999999853 33 44566666   5566655 56677655


Q ss_pred             C
Q psy6542         226 S  226 (334)
Q Consensus       226 ~  226 (334)
                      +
T Consensus       243 ~  243 (355)
T 2eu9_A          243 E  243 (355)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.95  E-value=1.9e-29  Score=234.23  Aligned_cols=172  Identities=15%  Similarity=0.039  Sum_probs=127.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc------chHHhhhHHHHHHHHHhcC---------CCCccccc---------
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH------ESRVAKWRPYIQEIFNHLR---------NEPFKKCV---------   67 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~------~~~~~~~~~~E~~il~~l~---------h~~i~~~~---------   67 (334)
                      +++...||+|.+  +|+.||||+++....      .....+.+.+|+++++.++         ||||....         
T Consensus        30 ~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~~~~~  107 (336)
T 2vuw_A           30 EGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSY  107 (336)
T ss_dssp             EETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEEEESSC
T ss_pred             ccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcceeEecCCC
Confidence            467789999998  789999999987643      1223356788999999986         88871111         


Q ss_pred             ccceeeEEEEeec-------------CCeEEEEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-cC
Q psy6542          68 LLFKMNLYKVTSE-------------PNSHYIIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCH-SA  131 (334)
Q Consensus        68 ~~~~v~~~~~~~~-------------~~~~~ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH-~~  131 (334)
                      +++++++++++.+             .+.+|||||||.||  ++.+..   ..+   ....+..++.||+.||.||| ++
T Consensus       108 hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~---~~~~~~~i~~qi~~aL~~lH~~~  181 (336)
T 2vuw_A          108 PPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLS---SLATAKSILHQLTASLAVAEASL  181 (336)
T ss_dssp             CHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCC---CHHHHHHHHHHHHHHHHHHHHhC
Confidence            1222444444443             68899999999888  444432   122   45556677889999999999 89


Q ss_pred             CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC--------------------CEEEEecccccccCCCCCCccccCcc
Q psy6542         132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG--------------------HVRISDLGLACDFSKKKPHASVESDC  191 (334)
Q Consensus       132 ~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~--------------------~vkl~DFGla~~~~~~~~~~~~~t~~  191 (334)
                      +                |+||||||+|||++.++                    .+||+|||+|+.....   ...||+.
T Consensus       182 ~----------------ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~---~~~gt~~  242 (336)
T 2vuw_A          182 R----------------FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG---IVVFCDV  242 (336)
T ss_dssp             C----------------CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT---EEECCCC
T ss_pred             C----------------EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC---cEEEeec
Confidence            9                99999999999999887                    8999999999977643   4578999


Q ss_pred             ccccccccccCC-cceeehh
Q psy6542         192 ILHGYIKKLGGP-FVSAWQT  210 (334)
Q Consensus       192 ~~~~~v~~~~~~-~~~~w~~  210 (334)
                      |++||+.....+ .+|+|++
T Consensus       243 y~aPE~~~g~~~~~~Diwsl  262 (336)
T 2vuw_A          243 SMDEDLFTGDGDYQFDIYRL  262 (336)
T ss_dssp             TTCSGGGCCCSSHHHHHHHH
T ss_pred             ccChhhhcCCCccceehhhh
Confidence            999999643334 4555553

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.95  E-value=3.8e-28  Score=233.59  Aligned_cols=225  Identities=11%  Similarity=0.046  Sum_probs=148.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.|+. ....+|+.||||++.....     ..+.+|+++++.+ +||||        |++++++.+.+.+||||||
T Consensus        34 ~G~~G~V~~-~~~~~~~~vAvK~~~~~~~-----~~~~~E~~~l~~l~~HpnI--------v~l~~~~~~~~~~~lv~E~   99 (432)
T 3p23_A           34 HGAEGTIVY-RGMFDNRDVAVKRILPECF-----SFADREVQLLRESDEHPNV--------IRYFCTEKDRQFQYIAIEL   99 (432)
T ss_dssp             ECGGGCEEE-EEESSSSEEEEEEECTTTE-----EECHHHHHHHHHSCCCTTB--------CCEEEEEEETTEEEEEEEC
T ss_pred             cCcCEEEEE-EEEeCCeEEEEEEECHHHH-----HHHHHHHHHHHhccCCCCc--------CeEEEEEecCCEEEEEEEC
Confidence            355666653 4456799999999975433     2345699999999 79999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC-----C
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH-----G  165 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~-----~  165 (334)
                      |.|++..+.........+.   ..+.++.||+.||.|||+++                |+||||||+|||++.+     .
T Consensus       100 ~~g~L~~~l~~~~~~~~~~---~~~~i~~qi~~aL~~LH~~~----------------ivHrDlKp~NIll~~~~~~~~~  160 (432)
T 3p23_A          100 CAATLQEYVEQKDFAHLGL---EPITLLQQTTSGLAHLHSLN----------------IVHRDLKPHNILISMPNAHGKI  160 (432)
T ss_dssp             CSEEHHHHHHSSSCCCCSS---CHHHHHHHHHHHHHHHHHTT----------------CCCCCCSTTSEEECCCBTTTBC
T ss_pred             CCCCHHHHHHhcCCCccch---hHHHHHHHHHHHHHHHHHCc----------------CEeCCCCHHHEEEecCCCCCce
Confidence            9988544433332222221   23456779999999999999                9999999999999532     3


Q ss_pred             CEEEEecccccccCCCC-----CCccccCcccccccccc----ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCccc
Q psy6542         166 HVRISDLGLACDFSKKK-----PHASVESDCILHGYIKK----LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPE  232 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~----~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~  232 (334)
                      .+||+|||+|+......     .....||+.|++||+..    ..++ .+|+|+   ++|++++++..||...... ...
T Consensus       161 ~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~-~~~  239 (432)
T 3p23_A          161 KAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR-QAN  239 (432)
T ss_dssp             CEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH-HHH
T ss_pred             eEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH-HHH
Confidence            58899999998765432     23456899999999854    2233 556666   6677777688887443221 111


Q ss_pred             chhcc-cccccccc-cccHhHHHHHHHhhccCchhhcCCC
Q psy6542         233 LIFMD-QIEEVSQD-LITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       233 ~i~~~-~~~~~~~~-~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+... ........ ..+......+..++..||..|++..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~  279 (432)
T 3p23_A          240 ILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAK  279 (432)
T ss_dssp             HHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             HHhccCCccccCccccccHHHHHHHHHHHhCCHhhCCCHH
Confidence            11111 11100001 1111234566666777888887754

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.95  E-value=9e-28  Score=231.07  Aligned_cols=227  Identities=15%  Similarity=0.055  Sum_probs=148.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.||.+ ...+|+.||||.+....     ...+.+|+++++.+ +||||        +++++++.+++.+|+||||
T Consensus        25 ~G~~g~V~~~-~~~~g~~vAvK~~~~~~-----~~~~~~E~~~l~~l~~HpnI--------v~~~~~~~~~~~~~lv~E~   90 (434)
T 2rio_A           25 YGSSGTVVFQ-GSFQGRPVAVKRMLIDF-----CDIALMEIKLLTESDDHPNV--------IRYYCSETTDRFLYIALEL   90 (434)
T ss_dssp             ECSTTCEEEE-EESSSSEEEEEEEEGGG-----HHHHHHHHHHHHHHTTSTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             eCCCeEEEEE-EEECCeEEEEEEEcHHH-----HHHHHHHHHHHHhccCCCCc--------CeEEEEEecCCeEEEEEec
Confidence            4667788765 45679999999987432     23466799999876 89999        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHH---HHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC---
Q psy6542          91 QSGPKDQISRSKINRYHKK---LRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH---  164 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~---~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~---  164 (334)
                      |+|++..+...........   ....++.++.||+.||.|||+++                |+||||||+|||++.+   
T Consensus        91 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~----------------ivHrDLkp~NILl~~~~~~  154 (434)
T 2rio_A           91 CNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK----------------IIHRDLKPQNILVSTSSRF  154 (434)
T ss_dssp             CSEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEEECCHHH
T ss_pred             CCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCC----------------ccccCCChHhEEEecCccc
Confidence            9877544433321111000   11124567889999999999999                9999999999999654   


Q ss_pred             ----------CCEEEEecccccccCCCCC------CccccCcccccccccc--------ccC-Ccceeeh---hHHHHHc
Q psy6542         165 ----------GHVRISDLGLACDFSKKKP------HASVESDCILHGYIKK--------LGG-PFVSAWQ---TRYAKLF  216 (334)
Q Consensus       165 ----------~~vkl~DFGla~~~~~~~~------~~~~~t~~~~~~~v~~--------~~~-~~~~~w~---~~~~~l~  216 (334)
                                +.+||+|||+|+.......      ....||+.|++||+..        ..+ ..+|+|+   ++|++++
T Consensus       155 ~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt  234 (434)
T 2rio_A          155 TADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILS  234 (434)
T ss_dssp             HSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             ccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHh
Confidence                      4799999999997765432      2356899999999853        223 4455566   6777777


Q ss_pred             CCCCCCCCCCCCCcccchhccccc-cccccc----ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         217 PNRLELHPESGQSKPELIFMDQIE-EVSQDL----ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~----~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ++..||.......  ..+...... ......    .+......+..++..||..|++..
T Consensus       235 ~g~~Pf~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~  291 (434)
T 2rio_A          235 KGKHPFGDKYSRE--SNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAM  291 (434)
T ss_dssp             TSCCTTCSTTTHH--HHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCCCchhhH--HHHhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHH
Confidence            6888885543211  111111110 000000    011234556666677888887754

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.95  E-value=1.3e-27  Score=220.57  Aligned_cols=189  Identities=15%  Similarity=0.108  Sum_probs=140.9

Q ss_pred             CCCceEEEecee-CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSL-KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~-~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +++.+.||+|.+ +.+|+.||||+++..   ....+.+.+|+++++.++|++..  ....++++++++.+.+.+|+||||
T Consensus        24 ~G~~g~V~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~--~~~~i~~~~~~~~~~~~~~lv~e~   98 (339)
T 1z57_A           24 EGAFGKVVECIDHKAGGRHVAVKIVKNV---DRYCEAARSEIQVLEHLNTTDPN--STFRCVQMLEWFEHHGHICIVFEL   98 (339)
T ss_dssp             EETTEEEEEEEETTTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHHCTT--CTTCBCCEEEEEEETTEEEEEEEC
T ss_pred             cCCCeEEEEEEecCCCCcEEEEEEEecC---CchhHHHHHHHHHHHHhhhcCCC--CceeeEeeecccccCCcEEEEEcC
Confidence            467789999998 668999999999743   23445677899999999887620  011129999999999999999999


Q ss_pred             cCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC------
Q psy6542          91 QSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE------  163 (334)
Q Consensus        91 ~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~------  163 (334)
                      +.+++ +.+.......+   ....+..++.|++.||.|||+++                |+||||||+|||++.      
T Consensus        99 ~~~~l~~~l~~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------ivH~Dlkp~Nil~~~~~~~~~  159 (339)
T 1z57_A           99 LGLSTYDFIKENGFLPF---RLDHIRKMAYQICKSVNFLHSNK----------------LTHTDLKPENILFVQSDYTEA  159 (339)
T ss_dssp             CCCBHHHHHHHTTTCCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEESCCCEEEE
T ss_pred             CCCCHHHHHHhcCCCCC---cHHHHHHHHHHHHHHHHHHHHCC----------------CcCCCCCHHHEEEeccccccc
Confidence            97664 44433221122   45556677889999999999999                999999999999988      


Q ss_pred             -------------CCCEEEEecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         164 -------------HGHVRISDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       164 -------------~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                                   ++.+||+|||+++..... .....||+.|++||+.. .. +..+|+|+   ++|+++ ++..||.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~-~g~~pf~~~  237 (339)
T 1z57_A          160 YNPKIKRDERTLINPDIKVVDFGSATYDDEH-HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYY-LGFTVFPTH  237 (339)
T ss_dssp             EC----CEEEEESCCCEEECCCSSCEETTSC-CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHH-HSSCSCCCS
T ss_pred             cCCccccccccccCCCceEeeCcccccCccc-cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHH-hCCCCCCCC
Confidence                         668999999999875543 34457899999999853 23 44566666   556665 456677655


Q ss_pred             C
Q psy6542         226 S  226 (334)
Q Consensus       226 ~  226 (334)
                      +
T Consensus       238 ~  238 (339)
T 1z57_A          238 D  238 (339)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.95  E-value=9.9e-28  Score=243.14  Aligned_cols=178  Identities=15%  Similarity=0.146  Sum_probs=138.3

Q ss_pred             CCCceEEEeceeCC-CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCe-----EE
Q psy6542          12 RVSKWRVKPPSLKP-LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNS-----HY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~-----~~   85 (334)
                      +++...||+|.+.. +|+.||||++..... ......+.+|+++++.++||||        +++++++...+.     .|
T Consensus        90 ~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~i--------v~~~~~~~~~~~~~~~~~~  160 (681)
T 2pzi_A           90 HGGLGWIYLALDRNVNGRPVVLKGLVHSGD-AEAQAMAMAERQFLAEVVHPSI--------VQIFNFVEHTDRHGDPVGY  160 (681)
T ss_dssp             EETTEEEEEEEEGGGTTEEEEEEESCSSCC-HHHHHHHHHHHGGGGGCCCTTB--------CCEEEEEEEECTTSCEEEE
T ss_pred             eCCCeEEEEEEEcCCCCcEEEEEEeCccCC-HHHHHHHHHHHHHHHhcCCCCc--------CeEeeeEeecCCCCCceeE
Confidence            46778999999986 799999999876433 3345577889999999999999        999999986655     79


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      |||||++|+ +......   .+   ....++.++.||+.||.|||+++                |+||||||+|||++.+
T Consensus       161 lv~E~~~g~~L~~~~~~---~l---~~~~~~~~~~qi~~aL~~lH~~g----------------iiHrDlkp~NIll~~~  218 (681)
T 2pzi_A          161 IVMEYVGGQSLKRSKGQ---KL---PVAEAIAYLLEILPALSYLHSIG----------------LVYNDLKPENIMLTEE  218 (681)
T ss_dssp             EEEECCCCEECC----C---CC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECSS
T ss_pred             EEEEeCCCCcHHHHHhC---CC---CHHHHHHHHHHHHHHHHHHHHCC----------------CeecccChHHeEEeCC
Confidence            999999998 4333222   22   45566778889999999999999                9999999999999885


Q ss_pred             CCEEEEecccccccCCCCCCccccCccccccccccccCC-cceeeh---hHHHHHcCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGP-FVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                       .+||+|||+++.....  ....||+.|++||+...+++ .+|+|+   ++|+++ ++.+|+.+
T Consensus       219 -~~kl~DFG~a~~~~~~--~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~-~g~~~~~~  278 (681)
T 2pzi_A          219 -QLKLIDLGAVSRINSF--GYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALT-LDLPTRNG  278 (681)
T ss_dssp             -CEEECCCTTCEETTCC--SCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHH-SCCCEETT
T ss_pred             -cEEEEecccchhcccC--CccCCCccccCHHHHcCCCCCceehhhhHHHHHHHH-hCCCCCcc
Confidence             8999999999877654  44568999999998655544 455566   555554 45556544

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.95  E-value=8e-27  Score=216.31  Aligned_cols=170  Identities=16%  Similarity=0.161  Sum_probs=132.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHh--cCCCCcccccccceeeEEEEeecCC----eEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNH--LRNEPFKKCVLLFKMNLYKVTSEPN----SHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~--l~h~~i~~~~~~~~v~~~~~~~~~~----~~~   85 (334)
                      +++.+.||+|.+  +|+.||||++...     ....+.+|.++++.  ++||||        +++++++...+    .+|
T Consensus        52 ~G~~g~Vy~~~~--~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~ni--------~~~~~~~~~~~~~~~~~~  116 (342)
T 1b6c_B           52 KGRFGEVWRGKW--RGEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENI--------LGFIAADNKDNGTWTQLW  116 (342)
T ss_dssp             EETTEEEEEEEE--TTEEEEEEEECGG-----GHHHHHHHHHHHHHSCCCCTTB--------CCEEEEEECCCSSCCCEE
T ss_pred             CCCCcEEEEEEE--cCccEEEEEeCch-----hHHHHHHHHHHHHHhhcCCCcE--------EEEEeeecccCCccceeE
Confidence            467789999987  5899999999742     22456679999988  799999        99999998775    799


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh--------cCCCCCchhhhhhcCCCCcEEeeCCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCH--------SALNKNPLIAIFLTLSVPCLHFRDLKP  156 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH--------~~~~~~~~~~~~~~~~~~~iiHrDlKp  156 (334)
                      +||||++|+ +..+....  .+   .....+.++.|++.||.|||        +.+                |+||||||
T Consensus       117 lv~e~~~~g~L~~~l~~~--~~---~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~----------------ivH~Dlkp  175 (342)
T 1b6c_B          117 LVSDYHEHGSLFDYLNRY--TV---TVEGMIKLALSTASGLAHLHMEIVGTQGKPA----------------IAHRDLKS  175 (342)
T ss_dssp             EEECCCTTCBHHHHHHHC--CB---CHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE----------------EECSCCSG
T ss_pred             EEEeecCCCcHHHHHhcc--Cc---cHHHHHHHHHHHHHHHHHHHHHHhhhcccCC----------------eeeCCCCH
Confidence            999999987 54433321  22   45556778889999999999        777                99999999


Q ss_pred             CceeeCCCCCEEEEecccccccCCCC------CCccccCcccccccccccc--------CCcceeeh---hHHHHHcC
Q psy6542         157 ANILLDEHGHVRISDLGLACDFSKKK------PHASVESDCILHGYIKKLG--------GPFVSAWQ---TRYAKLFP  217 (334)
Q Consensus       157 ~NiLl~~~~~vkl~DFGla~~~~~~~------~~~~~~t~~~~~~~v~~~~--------~~~~~~w~---~~~~~l~~  217 (334)
                      +|||++.++.+||+|||+++......      .....||+.|++||+....        +..+|+|+   ++|+++.+
T Consensus       176 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg  253 (342)
T 1b6c_B          176 KNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARR  253 (342)
T ss_dssp             GGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhc
Confidence            99999999999999999998665543      2345689999999985432        13567777   66776655

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.95  E-value=8.6e-28  Score=224.03  Aligned_cols=247  Identities=12%  Similarity=-0.002  Sum_probs=162.2

Q ss_pred             CCCceEEEeceeCC---CCCcEEEEEeeCCCcch---------HHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee
Q psy6542          12 RVSKWRVKPPSLKP---LGFPIQIGMLRHRPHES---------RVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS   79 (334)
Q Consensus        12 ~~~~~~V~~a~~~~---~~~~vAIK~l~~~~~~~---------~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~   79 (334)
                      +++.+.||+|.+..   ++..||||++.......         .....+.+|+.+++.++||||        +++++++.
T Consensus        47 ~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni--------~~~~~~~~  118 (345)
T 2v62_A           47 SGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGI--------PLFYGSGL  118 (345)
T ss_dssp             -----CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCC--------CCEEEEEE
T ss_pred             ecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCc--------ceeecccc
Confidence            46778999999987   89999999998765310         111245678899999999999        99999998


Q ss_pred             c----CCeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCC
Q psy6542          80 E----PNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK  155 (334)
Q Consensus        80 ~----~~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlK  155 (334)
                      .    ++.+|+||||+.+.+..+..... .+   ....++.++.||+.||.|||+++                |+|||||
T Consensus       119 ~~~~~~~~~~lv~e~~~~~L~~~l~~~~-~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~Dlk  178 (345)
T 2v62_A          119 TEFKGRSYRFMVMERLGIDLQKISGQNG-TF---KKSTVLQLGIRMLDVLEYIHENE----------------YVHGDIK  178 (345)
T ss_dssp             EESSSCEEEEEEEECEEEEHHHHCBGGG-BC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCS
T ss_pred             cccCCCcEEEEEEeccCCCHHHHHHhcC-CC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeCCCcC
Confidence            7    77899999999333544433321 23   45566778889999999999999                9999999


Q ss_pred             CCceeeCCCC--CEEEEecccccccCCCC---------CCccccCcccccccccccc--CCcceeeh---hHHHHHcCCC
Q psy6542         156 PANILLDEHG--HVRISDLGLACDFSKKK---------PHASVESDCILHGYIKKLG--GPFVSAWQ---TRYAKLFPNR  219 (334)
Q Consensus       156 p~NiLl~~~~--~vkl~DFGla~~~~~~~---------~~~~~~t~~~~~~~v~~~~--~~~~~~w~---~~~~~l~~~~  219 (334)
                      |+|||++.++  .+||+|||+|+.+....         .....||+.|++||+....  +..+|+|+   ++|++++ +.
T Consensus       179 p~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~-g~  257 (345)
T 2v62_A          179 AANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLC-GK  257 (345)
T ss_dssp             GGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHH-SS
T ss_pred             HHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHh-CC
Confidence            9999998887  99999999998664321         1345689999999985432  34566666   6666655 55


Q ss_pred             CCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch
Q psy6542         220 LELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC  299 (334)
Q Consensus       220 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~  299 (334)
                      .||.+....  ...+                 ..........-|.....+.  .....+..+.+  +...|...+|..|+
T Consensus       258 ~pf~~~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~--li~~~l~~dp~~Rp  314 (345)
T 2v62_A          258 LPWEQNLKD--PVAV-----------------QTAKTNLLDELPQSVLKWA--PSGSSCCEIAQ--FLVCAHSLAYDEKP  314 (345)
T ss_dssp             CTTGGGTTC--HHHH-----------------HHHHHHHHHTTTHHHHHHS--CTTSCCHHHHH--HHHHHHTCCTTCCC
T ss_pred             CCccccccc--cHHH-----------------HHHHHhhcccccHHHHhhc--cccccHHHHHH--HHHHHhhcCcccCC
Confidence            676432211  0000                 0000000000000000000  01134444555  77888889999999


Q ss_pred             -hHHHHHHHHHH
Q psy6542         300 -SQELLGSMARK  310 (334)
Q Consensus       300 -~~~lL~~l~~~  310 (334)
                       +.++++.+...
T Consensus       315 s~~~l~~~L~~~  326 (345)
T 2v62_A          315 NYQALKKILNPH  326 (345)
T ss_dssp             CHHHHHHHHCTT
T ss_pred             CHHHHHHHHhcc
Confidence             88888877654

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.94  E-value=3.2e-28  Score=223.60  Aligned_cols=238  Identities=13%  Similarity=0.102  Sum_probs=160.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +++.+.||+|.+..   .||||+++.........+.+.+|+.+++.++||||        +++++++.+.+.+++||||+
T Consensus        43 ~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--------v~~~~~~~~~~~~~iv~e~~  111 (319)
T 2y4i_B           43 KGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENV--------VLFMGACMSPPHLAIITSLC  111 (319)
T ss_dssp             CSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTB--------CCCCEEEECSSCEEEECBCC
T ss_pred             cCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCE--------eEEEEEEecCCceEEEeecc
Confidence            56778999998865   59999998765544445567789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|+ +..+.......+   ....++.++.|++.||.|||+++                ++||||||+||+++ ++.+||+
T Consensus       112 ~~~~L~~~l~~~~~~~---~~~~~~~i~~qi~~al~~lH~~~----------------i~H~dlkp~NIl~~-~~~~~l~  171 (319)
T 2y4i_B          112 KGRTLYSVVRDAKIVL---DVNKTRQIAQEIVKGMGYLHAKG----------------ILHKDLKSKNVFYD-NGKVVIT  171 (319)
T ss_dssp             CSEEHHHHTTSSCCCC---CSHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCSTTEEEC---CCEEC
T ss_pred             cCCcHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccccCCChhhEEEe-CCCEEEe
Confidence            987 544433322223   44556677889999999999999                99999999999998 6899999


Q ss_pred             ecccccccCCC-------CCCccccCccccccccccc----------c-CCcceeeh---hHHHHHcCCCCCCCCCCCCC
Q psy6542         171 DLGLACDFSKK-------KPHASVESDCILHGYIKKL----------G-GPFVSAWQ---TRYAKLFPNRLELHPESGQS  229 (334)
Q Consensus       171 DFGla~~~~~~-------~~~~~~~t~~~~~~~v~~~----------~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~  229 (334)
                      |||+++.....       ......|++.|++||+...          . +..+|+|+   ++|+++. +..||...... 
T Consensus       172 Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~-  249 (319)
T 2y4i_B          172 DFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHA-REWPFKTQPAE-  249 (319)
T ss_dssp             CCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHH-SSCSSSSCCHH-
T ss_pred             ecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHH-
Confidence            99998754321       1233457899999998532          2 33566666   5566655 55566433210 


Q ss_pred             cccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHH
Q psy6542         230 KPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMA  308 (334)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~  308 (334)
                                              .+...+...     ..+......++..+..  +...|...+|..|+ +.++++.+.
T Consensus       250 ------------------------~~~~~~~~~-----~~~~~~~~~~~~~l~~--li~~~l~~~p~~Rpt~~~l~~~l~  298 (319)
T 2y4i_B          250 ------------------------AIIWQMGTG-----MKPNLSQIGMGKEISD--ILLFCWAFEQEERPTFTKLMDMLE  298 (319)
T ss_dssp             ------------------------HHHHHHHTT-----CCCCCCCSSCCTTHHH--HHHHHHCSSTTTSCCHHHHHHHHT
T ss_pred             ------------------------HHHHHhccC-----CCCCCCcCCCCHHHHH--HHHHHhcCChhhCcCHHHHHHHHH
Confidence                                    000111000     0000011234455556  77788888888888 888888776


Q ss_pred             HHhCC
Q psy6542         309 RKAGK  313 (334)
Q Consensus       309 ~~~~~  313 (334)
                      ....+
T Consensus       299 ~l~~~  303 (319)
T 2y4i_B          299 KLPKR  303 (319)
T ss_dssp             TC---
T ss_pred             HHHHh
Confidence            64433

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.94  E-value=9.6e-28  Score=220.04  Aligned_cols=183  Identities=12%  Similarity=0.069  Sum_probs=138.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcch----HHhhhHHHHHHHHHhc----CCCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHES----RVAKWRPYIQEIFNHL----RNEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~----~~~~~~~~E~~il~~l----~h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      +++.+.||+|.+..+|+.||||++.......    .....+.+|+.+++.+    +||||        +++++++.+.+.
T Consensus        41 ~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i--------~~~~~~~~~~~~  112 (312)
T 2iwi_A           41 KGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGV--------IRLLDWFETQEG  112 (312)
T ss_dssp             EETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSB--------CCEEEEC-----
T ss_pred             cCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCe--------eeEEEEEecCCe
Confidence            4677899999999999999999998664311    2334566799999999    89999        999999999999


Q ss_pred             EEEEEEc-cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          84 HYIIGVR-QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        84 ~~ivmEy-~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      .++|||| +.|+ +..+.... ..+   ....++.++.|++.||.|||+++                |+||||||+||++
T Consensus       113 ~~~v~e~~~~~~~L~~~l~~~-~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------i~H~dlkp~Nil~  172 (312)
T 2iwi_A          113 FMLVLERPLPAQDLFDYITEK-GPL---GEGPSRCFFGQVVAAIQHCHSRG----------------VVHRDIKDENILI  172 (312)
T ss_dssp             CEEEEECCSSEEEHHHHHHHH-CSC---CHHHHHHHHHHHHHHHHHHHHHT----------------EECCCCSGGGEEE
T ss_pred             EEEEEEecCCCCCHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeecCCChhhEEE
Confidence            9999999 6666 43332322 122   45556677889999999999999                9999999999999


Q ss_pred             C-CCCCEEEEecccccccCCCCCCccccCccccccccccc-c-CC-cceeeh---hHHHHHcCCCCCCC
Q psy6542         162 D-EHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKL-G-GP-FVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       162 ~-~~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~-~-~~-~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      + .++.+||+|||+++...........|+..|++||+... . ++ .+|+|+   ++|+++. +..||.
T Consensus       173 ~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~  240 (312)
T 2iwi_A          173 DLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVC-GDIPFE  240 (312)
T ss_dssp             ETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHH-SSCSCC
T ss_pred             eCCCCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHH-CCCCCC
Confidence            8 78999999999999887766666778999999998532 2 23 566677   5666655 555653

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.94  E-value=5.7e-27  Score=215.10  Aligned_cols=181  Identities=16%  Similarity=0.141  Sum_probs=135.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCC--CCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRN--EPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h--~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +++.+.||+|.+.. |+.||||++............+.+|+++++.++|  +||        +++++++.+++.+|+|||
T Consensus        38 ~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i--------v~~~~~~~~~~~~~lv~e  108 (313)
T 3cek_A           38 SGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKI--------IRLYDYEITDQYIYMVME  108 (313)
T ss_dssp             CCSSEEEEEEECTT-CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTB--------CCEEEEEECSSEEEEEEC
T ss_pred             CCCCEEEEEEEcCC-CcEEEEEEeccccccccchHHHHHHHHHHHhccccCCce--------EEEEEEeecCCEEEEEEe
Confidence            57788999999865 8999999998776655566788899999999984  899        999999999999999999


Q ss_pred             ccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          90 RQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        90 y~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +..+++..+.... ..+   .....+.++.|++.||.|||+++                |+||||||+||++++ +.+||
T Consensus       109 ~~~~~L~~~l~~~-~~~---~~~~~~~i~~qi~~aL~~LH~~~----------------ivH~dlkp~NIl~~~-~~~kL  167 (313)
T 3cek_A          109 CGNIDLNSWLKKK-KSI---DPWERKSYWKNMLEAVHTIHQHG----------------IVHSDLKPANFLIVD-GMLKL  167 (313)
T ss_dssp             CCSEEHHHHHHHC-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEEET-TEEEE
T ss_pred             cCCCcHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------ceecCCCcccEEEEC-CeEEE
Confidence            7666654433322 223   34455677789999999999999                999999999999964 89999


Q ss_pred             EecccccccCCCCC----CccccCccccccccccc------------cCC-cceeeh---hHHHHHcCCCCCCC
Q psy6542         170 SDLGLACDFSKKKP----HASVESDCILHGYIKKL------------GGP-FVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       170 ~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~~------------~~~-~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      +|||+++.......    ....|++.|++||+...            .++ .+|+|+   ++|+++. +..||.
T Consensus       168 ~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~-g~~pf~  240 (313)
T 3cek_A          168 IDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY-GKTPFQ  240 (313)
T ss_dssp             CCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHH-SSCTTT
T ss_pred             eeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHh-CCCchh
Confidence            99999987654432    34468999999998532            333 566666   5566554 455653

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.94  E-value=1.4e-26  Score=211.30  Aligned_cols=162  Identities=14%  Similarity=0.113  Sum_probs=124.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHH-HhcCCCCcccccccceeeEEEEeec----CCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIF-NHLRNEPFKKCVLLFKMNLYKVTSE----PNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il-~~l~h~~i~~~~~~~~v~~~~~~~~----~~~~~i   86 (334)
                      +++.+.||+|.++.+|+.||||+++.       ...+.+|++++ +.++||||        +++++++..    ++.+|+
T Consensus        28 ~G~~g~V~~~~~~~~~~~vaiK~~~~-------~~~~~~e~~~~~~~~~h~~i--------~~~~~~~~~~~~~~~~~~l   92 (299)
T 3m2w_A           28 LGINGKVLQIFNKRTQEKFALKMLQD-------CPKARREVELHWRASQCPHI--------VRIVDVYENLYAGRKCLLI   92 (299)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEC-------SHHHHHHHHHHHHHTTSTTB--------CCEEEEEEEEETTEEEEEE
T ss_pred             cCCCeEEEEEEEcCCCcEEEEEEecc-------cHHHHHHHHHHHHhccCCCc--------hhHHhhhhhhcCCCceEEE
Confidence            57788999999999999999999973       23455688887 66799999        999999876    677999


Q ss_pred             EEEccCCC-hhHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-
Q psy6542          87 IGVRQSGP-KDQISRSK-INRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-  163 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~-~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-  163 (334)
                      ||||++|+ +..+.... ...+   ....++.++.|++.||.|||+++                |+||||||+||+++. 
T Consensus        93 v~e~~~~~~L~~~l~~~~~~~~---~~~~~~~i~~qi~~~l~~lH~~~----------------i~H~dlkp~Nil~~~~  153 (299)
T 3m2w_A           93 VMECLDGGELFSRIQDRGDQAF---TEREASEIMKSIGEAIQYLHSIN----------------IAHRDVKPENLLYTSK  153 (299)
T ss_dssp             EECCCCSCBHHHHHHHCTTCCC---BHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEESSS
T ss_pred             EEeecCCCcHHHHHHhccCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCCCCHHHEEEecC
Confidence            99999986 43333322 1123   45566778889999999999999                999999999999998 


Q ss_pred             --CCCEEEEecccccccCCCCCCccccCccccccccccccCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         164 --HGHVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       164 --~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                        ++.+||+|||++......                  .....+|+|+   ++|+++. +..||.+..
T Consensus       154 ~~~~~~kl~Dfg~a~~~~~~------------------~~~~~~DiwslG~il~el~t-g~~pf~~~~  202 (299)
T 3m2w_A          154 RPNAILKLTDFGFAKETTGE------------------KYDKSCDMWSLGVIMYILLC-GYPPFYSNH  202 (299)
T ss_dssp             STTCCEEECCCTTCEECTTC------------------GGGGHHHHHHHHHHHHHHHH-SSCSCCC--
T ss_pred             CCCCcEEEeccccccccccc------------------cCCchhhHHHHHHHHHHHHH-CCCCCCCCc
Confidence              788999999998754421                  1233566777   5556555 666776554

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.94  E-value=9.3e-28  Score=225.24  Aligned_cols=183  Identities=12%  Similarity=0.093  Sum_probs=136.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-----------CCCcccccccceeeEEEEeec
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-----------NEPFKKCVLLFKMNLYKVTSE   80 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-----------h~~i~~~~~~~~v~~~~~~~~   80 (334)
                      +++.+.||+|.+..+|+.||||++....   .....+.+|+++++.++           |+||        +++++++..
T Consensus        29 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i--------~~~~~~~~~   97 (373)
T 1q8y_A           29 WGHFSTVWLAKDMVNNTHVAMKIVRGDK---VYTEAAEDEIKLLQRVNDADNTKEDSMGANHI--------LKLLDHFNH   97 (373)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECSCH---HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTB--------CCCCEEEEE
T ss_pred             ecCCeEEEEEEecCCCcEEEEEEecCCc---cchhhhhHHHHHHHHhhcccccchhccccchH--------HHHHHHhhc
Confidence            4677899999999999999999998532   23456778999999887           7889        999999885


Q ss_pred             CC----eEEEEEEccCCChhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCC
Q psy6542          81 PN----SHYIIGVRQSGPKDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDL  154 (334)
Q Consensus        81 ~~----~~~ivmEy~~g~l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDl  154 (334)
                      .+    .+++||||+.+++..+... ....+   ....++.++.||+.||.|||++ +                |+||||
T Consensus        98 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~---~~~~~~~i~~qi~~aL~~lH~~~~----------------ivH~Di  158 (373)
T 1q8y_A           98 KGPNGVHVVMVFEVLGENLLALIKKYEHRGI---PLIYVKQISKQLLLGLDYMHRRCG----------------IIHTDI  158 (373)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTTSCC---CHHHHHHHHHHHHHHHHHHHHTTC----------------EECSCC
T ss_pred             cCCCCceEEEEEecCCCCHHHHHHHhhccCC---cHHHHHHHHHHHHHHHHHHHhcCC----------------EEecCC
Confidence            43    7899999995555443332 22223   4455667788999999999998 9                999999


Q ss_pred             CCCceeeC------CCCCEEEEecccccccCCCCCCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCC
Q psy6542         155 KPANILLD------EHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELH  223 (334)
Q Consensus       155 Kp~NiLl~------~~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~  223 (334)
                      ||+|||++      ..+.+||+|||+++..... .....||+.|++||+.. . .+..+|+|+   ++|+++. +..||.
T Consensus       159 kp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g~~pf~  236 (373)
T 1q8y_A          159 KPENVLMEIVDSPENLIQIKIADLGNACWYDEH-YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT-GDFLFE  236 (373)
T ss_dssp             SGGGEEEEEEETTTTEEEEEECCCTTCEETTBC-CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHH-SSCCC-
T ss_pred             ChHHeEEeccCCCcCcceEEEcccccccccCCC-CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHh-CCCCCC
Confidence            99999994      4457999999999876554 33457899999999853 2 244566666   5566655 566776


Q ss_pred             CCC
Q psy6542         224 PES  226 (334)
Q Consensus       224 ~~~  226 (334)
                      +.+
T Consensus       237 ~~~  239 (373)
T 1q8y_A          237 PDE  239 (373)
T ss_dssp             ---
T ss_pred             CCc
Confidence            554

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.94  E-value=2.1e-26  Score=220.19  Aligned_cols=234  Identities=13%  Similarity=0.066  Sum_probs=148.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCC-CCcc--ccc----cc-------ceeeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRN-EPFK--KCV----LL-------FKMNLYK   76 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h-~~i~--~~~----~~-------~~v~~~~   76 (334)
                      +|+.+.||+|.+..+|+.||||+++.... .....+.+.+|+.+++.++| .|..  ...    ..       ....+..
T Consensus        88 ~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (413)
T 3dzo_A           88 QEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIR  167 (413)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC------
T ss_pred             cCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCCCcccc
Confidence            46788999999999999999999985444 33345678889999999988 3220  000    00       0011111


Q ss_pred             Eeec-----CCeEEEEEEccCCChhHHhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCc
Q psy6542          77 VTSE-----PNSHYIIGVRQSGPKDQISRSK---INRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPC  148 (334)
Q Consensus        77 ~~~~-----~~~~~ivmEy~~g~l~~l~~~~---~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~  148 (334)
                      ++..     ...++++|+++.+++..+....   ............+.++.|++.||.|||+++                
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~----------------  231 (413)
T 3dzo_A          168 VRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG----------------  231 (413)
T ss_dssp             ---------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT----------------
T ss_pred             ccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------
Confidence            1221     2347889998888854443211   111223345556677789999999999999                


Q ss_pred             EEeeCCCCCceeeCCCCCEEEEecccccccCCCCCCccccCcccccccccc----------c--cCCcceeeh---hHHH
Q psy6542         149 LHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKK----------L--GGPFVSAWQ---TRYA  213 (334)
Q Consensus       149 iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~----------~--~~~~~~~w~---~~~~  213 (334)
                      |+||||||+|||++.++.+||+|||+++..... ....+| +.|++||+..          .  .+..+|+|+   ++|+
T Consensus       232 iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~e  309 (413)
T 3dzo_A          232 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYW  309 (413)
T ss_dssp             EECSCCCGGGEEECTTCCEEECCGGGCEETTEE-ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHH
T ss_pred             cccCCcccceEEEecCCeEEEEeccceeecCCc-cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHH
Confidence            999999999999999999999999999876554 344567 9999999852          1  123566666   5666


Q ss_pred             HHcCCCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         214 KLFPNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ++. +..||.+.+.....+.++....     ... ......+..++..||..|++..
T Consensus       310 llt-g~~Pf~~~~~~~~~~~~~~~~~-----~~~-~~~~~li~~~l~~dP~~Rpt~~  359 (413)
T 3dzo_A          310 IWC-ADLPNTDDAALGGSEWIFRSCK-----NIP-QPVRALLEGFLRYPKEDRLLPL  359 (413)
T ss_dssp             HHH-SSCCCCTTGGGSCSGGGGSSCC-----CCC-HHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHH-CCCCCCCcchhhhHHHHHhhcc-----cCC-HHHHHHHHHHccCChhhCcCHH
Confidence            655 6668866554333332222111     111 1233455555566777776643

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.93  E-value=6.5e-26  Score=227.05  Aligned_cols=186  Identities=15%  Similarity=0.074  Sum_probs=142.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec------CCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE------PNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~------~~~~~   85 (334)
                      +++.+.||+|.++.+|+.||||+++... .....+.+.+|+++++.++||||        +++++++..      ++..|
T Consensus        24 ~G~fG~Vyla~~~~tg~~VAVKvi~~~~-~~~~~~~~~~Ei~iL~~L~HpnI--------V~l~~v~~~~~~~~~~~~~~   94 (676)
T 3qa8_A           24 TGGFGYVLRWIHQDTGEQVAIKQCRQEL-SPKNRERWCLEIQIMKKLNHPNV--------VSAREVPDGLQKLAPNDLPL   94 (676)
T ss_dssp             BCSSSBCCCCCCTTTTCCEEECCCCSCC-CHHHHHHHHHHHHHHHHCCBTTB--------CCEEECCTTTCCCCTTSSCC
T ss_pred             eCCCeEEEEEEECCCCcEEEEEEecccC-CHHHHHHHHHHHHHHHhCCCCCC--------CceeeeecccccccCCCeEE
Confidence            4777899999999999999999998653 33345678889999999999999        999999765      67789


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      +||||++|+ +..+...... ........++.++.|++.||.|||+.+                |+||||||+||+++.+
T Consensus        95 LVmEy~~ggsL~~~L~~~~~-~~~lse~~i~~I~~QLl~aL~yLHs~g----------------IVHrDLKP~NILl~~~  157 (676)
T 3qa8_A           95 LAMEYCEGGDLRKYLNQFEN-CCGLKEGPIRTLLSDISSALRYLHENR----------------IIHRDLKPENIVLQPG  157 (676)
T ss_dssp             CEEECCSSCBHHHHHHSSSC-TTCCCSSHHHHHHHHHHHHHHHHHHTT----------------BCCCCCCSTTEEEECC
T ss_pred             EEEEeCCCCCHHHHHHhccc-CCCCCHHHHHHHHHHHHHHHHHHHHCC----------------CccCCCCHHHeEeecC
Confidence            999999887 5444332211 111234455677789999999999999                9999999999999977


Q ss_pred             CC---EEEEecccccccCCCCC-CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCC
Q psy6542         165 GH---VRISDLGLACDFSKKKP-HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       165 ~~---vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~  224 (334)
                      +.   +||+|||+++....... ....||+.|++||+.. .. +..+|+|+   ++|++ .++..||.+
T Consensus       158 g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeL-ltG~~Pf~~  225 (676)
T 3qa8_A          158 PQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFEC-ITGFRPFLP  225 (676)
T ss_dssp             SSSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHH-HSSCSSCCS
T ss_pred             CCceeEEEcccccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHH-HHCCCCCCc
Confidence            65   99999999997765543 3457899999999853 33 44566666   55555 555667754

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.89  E-value=4.9e-24  Score=210.33  Aligned_cols=158  Identities=15%  Similarity=0.089  Sum_probs=120.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc------chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH------ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~------~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +++...||++  ...++.+|+|.......      +....+++.+|++++++++||||        +++..++...+..|
T Consensus       346 ~G~fg~Vy~~--~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nI--------v~~~~~~~~~~~~~  415 (540)
T 3en9_A          346 KGAEADIKRD--SYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGI--------PAPYIFDVDLDNKR  415 (540)
T ss_dssp             --CCEEEEEE--ECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTC--------CCCCEEEEETTTTE
T ss_pred             eCCCEEEEEE--EECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCc--------CceEEEEEeCCccE
Confidence            5778899999  45678999998765433      12224567899999999999999        84433344566779


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      |||||++|+ +..+...            ...++.|++.||.|||+++                |+||||||+|||+++ 
T Consensus       416 lVmE~~~ggsL~~~l~~------------~~~i~~qi~~aL~~LH~~g----------------IiHrDiKp~NILl~~-  466 (540)
T 3en9_A          416 IMMSYINGKLAKDVIED------------NLDIAYKIGEIVGKLHKND----------------VIHNDLTTSNFIFDK-  466 (540)
T ss_dssp             EEEECCCSEEHHHHSTT------------CTHHHHHHHHHHHHHHHTT----------------EECTTCCTTSEEESS-
T ss_pred             EEEECCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHCc----------------CccCCCCHHHEEECC-
Confidence            999999987 5333222            3466779999999999999                999999999999999 


Q ss_pred             CCEEEEecccccccCCCCC---------CccccCcccccccccc---ccCCcceeeh
Q psy6542         165 GHVRISDLGLACDFSKKKP---------HASVESDCILHGYIKK---LGGPFVSAWQ  209 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~---------~~~~~t~~~~~~~v~~---~~~~~~~~w~  209 (334)
                       .+||+|||+|+.......         ....||+.|++||+..   .+|....+||
T Consensus       467 -~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~w  522 (540)
T 3en9_A          467 -DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRW  522 (540)
T ss_dssp             -SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTH
T ss_pred             -eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHH
Confidence             999999999998766432         3567899999999853   4455555555

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.84  E-value=4.5e-21  Score=174.08  Aligned_cols=127  Identities=9%  Similarity=-0.060  Sum_probs=96.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcch----------------HHhhhHHHHHHHHHhcCCCCcccccccceeeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHES----------------RVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLY   75 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~----------------~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~   75 (334)
                      .++...||+|.+ .+|+.||||+++......                .....+.+|+++++.++|.++        ...+
T Consensus       100 ~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~~~v--------~~~~  170 (282)
T 1zar_A          100 EGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAV--------PKVY  170 (282)
T ss_dssp             ECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSS--------CCEE
T ss_pred             cCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccCCCc--------CeEE
Confidence            466789999999 889999999997543211                134567899999999996555        5544


Q ss_pred             EEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCC
Q psy6542          76 KVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDL  154 (334)
Q Consensus        76 ~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDl  154 (334)
                      +    .+..|+||||++|+ +..+..      .  .   ...++.|++.||.|||+++                |+||||
T Consensus       171 ~----~~~~~lvmE~~~g~~L~~l~~------~--~---~~~i~~qi~~~l~~lH~~g----------------iiHrDl  219 (282)
T 1zar_A          171 A----WEGNAVLMELIDAKELYRVRV------E--N---PDEVLDMILEEVAKFYHRG----------------IVHGDL  219 (282)
T ss_dssp             E----EETTEEEEECCCCEEGGGCCC------S--C---HHHHHHHHHHHHHHHHHTT----------------EECSCC
T ss_pred             e----ccceEEEEEecCCCcHHHcch------h--h---HHHHHHHHHHHHHHHHHCC----------------CEeCCC
Confidence            3    24569999999997 533211      1  1   1246679999999999999                999999


Q ss_pred             CCCceeeCCCCCEEEEecccccccC
Q psy6542         155 KPANILLDEHGHVRISDLGLACDFS  179 (334)
Q Consensus       155 Kp~NiLl~~~~~vkl~DFGla~~~~  179 (334)
                      ||+|||++ ++.+||+|||+|+...
T Consensus       220 kp~NILl~-~~~vkl~DFG~a~~~~  243 (282)
T 1zar_A          220 SQYNVLVS-EEGIWIIDFPQSVEVG  243 (282)
T ss_dssp             STTSEEEE-TTEEEECCCTTCEETT
T ss_pred             CHHHEEEE-CCcEEEEECCCCeECC
Confidence            99999999 9999999999997443

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.78  E-value=4.4e-19  Score=158.78  Aligned_cols=137  Identities=15%  Similarity=0.059  Sum_probs=96.7

Q ss_pred             CCCceEEEeceeCCCCCc--EEEEEeeCCCcc----------------------hHHhhhHHHHHHHHHhcCCCCccccc
Q psy6542          12 RVSKWRVKPPSLKPLGFP--IQIGMLRHRPHE----------------------SRVAKWRPYIQEIFNHLRNEPFKKCV   67 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~--vAIK~l~~~~~~----------------------~~~~~~~~~E~~il~~l~h~~i~~~~   67 (334)
                      .++...||+|.+..+|+.  ||||+++.....                      ......+.+|+++++.+.|+++    
T Consensus        57 ~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i----  132 (258)
T 1zth_A           57 TGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGV----  132 (258)
T ss_dssp             ECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             ecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCCC----
Confidence            577789999999888999  999998654221                      0112367889999999998864    


Q ss_pred             ccceeeEEEEeecCCeEEEEEEccCC-C--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-cCCCCCchhhhhhc
Q psy6542          68 LLFKMNLYKVTSEPNSHYIIGVRQSG-P--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCH-SALNKNPLIAIFLT  143 (334)
Q Consensus        68 ~~~~v~~~~~~~~~~~~~ivmEy~~g-~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH-~~~~~~~~~~~~~~  143 (334)
                        .+...++.    +..++||||+++ |  ...+... ....   .......++.|++.||.||| +.+           
T Consensus       133 --~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~-~~~~---~~~~~~~i~~qi~~~l~~lH~~~g-----------  191 (258)
T 1zth_A          133 --SVPQPYTY----MKNVLLMEFIGEDELPAPTLVEL-GREL---KELDVEGIFNDVVENVKRLYQEAE-----------  191 (258)
T ss_dssp             --CCCCEEEE----ETTEEEEECCEETTEECCBHHHH-GGGG---GGSCHHHHHHHHHHHHHHHHHTSC-----------
T ss_pred             --CCCeEEEc----CCCEEEEEecCCCCCccccHHHH-hhcc---ChHHHHHHHHHHHHHHHHHHHHCC-----------
Confidence              01344432    356899999943 2  1111111 1111   12233456679999999999 999           


Q ss_pred             CCCCcEEeeCCCCCceeeCCCCCEEEEecccccccCC
Q psy6542         144 LSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSK  180 (334)
Q Consensus       144 ~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~  180 (334)
                           |+||||||+|||++.  .++|+|||+|.....
T Consensus       192 -----ivHrDlkp~NILl~~--~~~liDFG~a~~~~~  221 (258)
T 1zth_A          192 -----LVHADLSEYNIMYID--KVYFIDMGQAVTLRH  221 (258)
T ss_dssp             -----EECSSCSTTSEEESS--SEEECCCTTCEETTS
T ss_pred             -----EEeCCCCHHHEEEcC--cEEEEECcccccCCC
Confidence                 999999999999998  899999999986543

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.56  E-value=6e-15  Score=138.58  Aligned_cols=132  Identities=13%  Similarity=-0.024  Sum_probs=88.3

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc------------h--------HHhhhHHHHHHHHHhcCCCCcccccccce
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE------------S--------RVAKWRPYIQEIFNHLRNEPFKKCVLLFK   71 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~------------~--------~~~~~~~~E~~il~~l~h~~i~~~~~~~~   71 (334)
                      .|+...||+|.+. +|+.||||+++.....            .        ........|...|.++.+.++      .+
T Consensus       105 ~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv------~v  177 (397)
T 4gyi_A          105 VGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF------PV  177 (397)
T ss_dssp             ECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC------SC
T ss_pred             eCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC------CC
Confidence            4666789999986 5999999998753210            0        001122457777777765554      00


Q ss_pred             eeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE
Q psy6542          72 MNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH  150 (334)
Q Consensus        72 v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii  150 (334)
                      ...++..    ..+|||||++|. +..+.     ...  ...   .++.|++.+|.|||+.+                ||
T Consensus       178 p~p~~~~----~~~LVME~i~G~~L~~l~-----~~~--~~~---~l~~qll~~l~~lH~~g----------------IV  227 (397)
T 4gyi_A          178 PEPIAQS----RHTIVMSLVDALPMRQVS-----SVP--DPA---SLYADLIALILRLAKHG----------------LI  227 (397)
T ss_dssp             CCEEEEE----TTEEEEECCSCEEGGGCC-----CCS--CHH---HHHHHHHHHHHHHHHTT----------------EE
T ss_pred             Ceeeecc----CceEEEEecCCccHhhhc-----ccH--HHH---HHHHHHHHHHHHHHHCC----------------Cc
Confidence            2223221    247999999988 42221     111  122   34459999999999999                99


Q ss_pred             eeCCCCCceeeCCCCC----------EEEEecccccccCC
Q psy6542         151 FRDLKPANILLDEHGH----------VRISDLGLACDFSK  180 (334)
Q Consensus       151 HrDlKp~NiLl~~~~~----------vkl~DFGla~~~~~  180 (334)
                      ||||||.|||++++|.          +.|+||+=+.....
T Consensus       228 HrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~h  267 (397)
T 4gyi_A          228 HGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSMDH  267 (397)
T ss_dssp             CSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEETTS
T ss_pred             CCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccCCC
Confidence            9999999999988773          88999997765443

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.19  E-value=9.3e-11  Score=104.12  Aligned_cols=143  Identities=12%  Similarity=0.022  Sum_probs=95.0

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      ++.-+||++...  |..+++|+.......  ....+.+|+++++.+. +.++        .++++++.+.+..|+||||+
T Consensus        25 ~s~~~v~~~~~~--~~~~vlK~~~~~~~~--~~~~~~~E~~~l~~l~~~~~v--------P~v~~~~~~~~~~~lv~e~i   92 (263)
T 3tm0_A           25 MSPAKVYKLVGE--NENLYLKMTDSRYKG--TTYDVEREKDMMLWLEGKLPV--------PKVLHFERHDGWSNLLMSEA   92 (263)
T ss_dssp             CSSSEEEEEECS--SCEEEEEEECGGGTT--STTCHHHHHHHHHHHTTTSCC--------CCEEEEEEETTEEEEEEECC
T ss_pred             CCCCeEEEEECC--CCcEEEEeCCcccCC--CHHHHHHHHHHHHHHhcCCCC--------CeEEEEEecCCceEEEEEec
Confidence            344568877643  689999998753211  1235778999999996 5566        78999988888999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---------------hhh---------------
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPL---------------IAI---------------  140 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~---------------~~~---------------  140 (334)
                      +|. +.....      ......   .++.++..+|..||+....+..               ..-               
T Consensus        93 ~G~~l~~~~~------~~~~~~---~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (263)
T 3tm0_A           93 DGVLCSEEYE------DEQSPE---KIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTP  163 (263)
T ss_dssp             SSEEHHHHCC------TTTCHH---HHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCS
T ss_pred             CCeehhhccC------CcccHH---HHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccccc
Confidence            998 422210      011112   3445899999999983211100               000               


Q ss_pred             -------------hhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         141 -------------FLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       141 -------------~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                                   ......+.++|+|++|.||++++++.+.|+||+.+.
T Consensus       164 ~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          164 FKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             SSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             CCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                         000123668999999999999876556799999764

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.09  E-value=3.5e-10  Score=99.66  Aligned_cols=141  Identities=10%  Similarity=-0.061  Sum_probs=94.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .++...||++.. .+|..+++|+....     ....+.+|+++++.+.+.++      -+.+++.+...++..|+||||+
T Consensus        30 gg~~~~v~~~~~-~~g~~~vlK~~~~~-----~~~~~~~E~~~l~~l~~~~~------~vP~~~~~~~~~~~~~~v~e~i   97 (264)
T 1nd4_A           30 GCSDAAVFRLSA-QGRPVLFVKTDLSG-----ALNELQDEAARLSWLATTGV------PCAAVLDVVTEAGRDWLLLGEV   97 (264)
T ss_dssp             TTSSCEEEEEEC-TTSCCEEEEEECSC-----TTSCHHHHHHHHHHHHTTTC------CBCCEEEEEECSSCEEEEEECC
T ss_pred             CCCCceEEEEec-CCCCeEEEEeCCcc-----cchhhhHHHHHHHHHHhCCC------CCCeEEEeccCCCCCEEEEEec
Confidence            445578888854 45788999997643     12456779999999875442      1167888888878899999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---------------------------------
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPL---------------------------------  137 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~---------------------------------  137 (334)
                      +|. ++ . .    ..   ...   .++.+++..|..||.....+..                                 
T Consensus        98 ~G~~l~-~-~----~~---~~~---~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (264)
T 1nd4_A           98 PGQDLL-S-S----HL---APA---EKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGL  165 (264)
T ss_dssp             SSEETT-T-S----CC---CHH---HHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTC
T ss_pred             CCcccC-c-C----cC---CHh---HHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCc
Confidence            998 42 1 1    00   111   2334888889999975411000                                 


Q ss_pred             ---------hhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         138 ---------IAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       138 ---------~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                               ....-....+.++|+|++|.||++++++.++|+|||.|.
T Consensus       166 ~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          166 APAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             CHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence                     000001223459999999999999876667799999875

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.90  E-value=6.6e-09  Score=96.58  Aligned_cols=147  Identities=10%  Similarity=0.041  Sum_probs=92.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEee--CCCcchHHhhhHHHHHHHHHhcCCC--CcccccccceeeEEEEeecC---CeE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLR--HRPHESRVAKWRPYIQEIFNHLRNE--PFKKCVLLFKMNLYKVTSEP---NSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~--~~~~~~~~~~~~~~E~~il~~l~h~--~i~~~~~~~~v~~~~~~~~~---~~~   84 (334)
                      .+.+-+||++...  +..+++|+..  ...... ....+.+|+.+++.+.+.  ++        .+++.++.+.   +..
T Consensus        48 ~G~sn~~y~v~~~--~~~~vlr~~~~p~~~~~~-~~~~~~~E~~~l~~L~~~~vpv--------P~~~~~~~~~~~~g~~  116 (359)
T 3dxp_A           48 GGQSNPTFKLVTP--GQTYVMRAKPGPKSKLLP-SAHAIEREYRVMDALAGTDVPV--------AKMYALCEDESVIGRA  116 (359)
T ss_dssp             C-CCSCEEEEECS--SCEEEEECCCC-----------CHHHHHHHHHHHTTSSSCC--------CCEEEEECCTTTTSSC
T ss_pred             CcccceEEEEEEC--CceEEEEeCCCCCCCCCC-cHHHHHHHHHHHHHhhcCCCCC--------CcEEEECCCCCccCCe
Confidence            3555678877654  4578888766  332211 234677899999999853  45        7888888766   458


Q ss_pred             EEEEEccCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhh---------------------
Q psy6542          85 YIIGVRQSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIF---------------------  141 (334)
Q Consensus        85 ~ivmEy~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~---------------------  141 (334)
                      |+||||++|. + +..    ....++   .....++.+++..|..||.......-..-+                     
T Consensus       117 ~~vme~v~G~~l~~~~----~~~l~~---~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (359)
T 3dxp_A          117 FYIMEFVSGRVLWDQS----LPGMSP---AERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLS  189 (359)
T ss_dssp             EEEEECCCCBCCCCTT----CTTCCH---HHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCeecCCCc----cccCCH---HHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhc
Confidence            9999999997 3 111    111222   222344559999999999853211000000                     


Q ss_pred             -------------------hcC--CCCcEEeeCCCCCceeeCCCCC--EEEEeccccc
Q psy6542         142 -------------------LTL--SVPCLHFRDLKPANILLDEHGH--VRISDLGLAC  176 (334)
Q Consensus       142 -------------------~~~--~~~~iiHrDlKp~NiLl~~~~~--vkl~DFGla~  176 (334)
                                         -..  ..+.++|+|++|.|||++.++.  +.|+||+.|.
T Consensus       190 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~  247 (359)
T 3dxp_A          190 ETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELST  247 (359)
T ss_dssp             CCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCE
T ss_pred             CCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccc
Confidence                               000  1467999999999999998754  6899999886

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.62  E-value=5.1e-07  Score=80.08  Aligned_cols=139  Identities=14%  Similarity=0.077  Sum_probs=92.8

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCC-CCcccccccceeeEEEEeecCCeEEEEEEccCCC-
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRN-EPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-   94 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h-~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-   94 (334)
                      .||.......+..+.+|.-...     ....+.+|..+|+.+.. -.+        .+++.++.+++..|+|||+++|. 
T Consensus        40 ~v~rl~~~~~~~~~~lk~~~~~-----~~~~~~~E~~~l~~l~~~vPV--------P~v~~~~~~~~~~~lvme~l~G~~  106 (272)
T 4gkh_A           40 TIYRLYGKPNAPELFLKHGKGS-----VANDVTDEMVRLNWLTAFMPL--------PTIKHFIRTPDDAWLLTTAIPGKT  106 (272)
T ss_dssp             EEEEEECCTTCCCEEEEEEETH-----HHHHHHHHHHHHHHHTTTSCC--------CCEEEEEEETTEEEEEEECCCSEE
T ss_pred             eEEEEEecCCCeEEEEEECCCC-----CHhHHHHHHHHHHHhccCCCc--------CeEEEEEEECCeEEEEEEeeCCcc
Confidence            5777777777888999986632     23456779999998863 234        78888888889999999999998 


Q ss_pred             hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCc--------------------------------------
Q psy6542          95 KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNP--------------------------------------  136 (334)
Q Consensus        95 l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~--------------------------------------  136 (334)
                      +......     ......   .+..++...|.-||.....+.                                      
T Consensus       107 ~~~~~~~-----~~~~~~---~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (272)
T 4gkh_A          107 AFQVLEE-----YPDSGE---NIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQ  178 (272)
T ss_dssp             HHHHHHH-----CGGGHH---HHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHH
T ss_pred             ccccccC-----CHHHHH---HHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHH
Confidence            3222111     111222   233477788888886432111                                      


Q ss_pred             ----hhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         137 ----LIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       137 ----~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                          +....-....+.++|+|+.+.|||++.++.+-|+||+.+.
T Consensus       179 ~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          179 VWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             HHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence                0000012344568899999999999987777899999875

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.52  E-value=9.8e-07  Score=79.89  Aligned_cols=145  Identities=14%  Similarity=0.046  Sum_probs=90.6

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCC---eEEEEE
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPN---SHYIIG   88 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~---~~~ivm   88 (334)
                      +....||++.     ..+++|+-...    .....+.+|+++++.+. +..+      -+.+.+......+   ..|+||
T Consensus        31 G~~n~v~~v~-----~~~vlR~~~~~----~~~~~~~~E~~~l~~l~~~~~v------~vP~~~~~~~~~~~~~~~~~vm   95 (304)
T 3sg8_A           31 GNDCIAYEIN-----RDFIFKFPKHS----RGSTNLFNEVNILKRIHNKLPL------PIPEVVFTGMPSETYQMSFAGF   95 (304)
T ss_dssp             CSSEEEEEST-----TSEEEEEESSH----HHHHHHHHHHHHHHHHTTSSSS------CCCCEEEECCCCSSCSCSCEEE
T ss_pred             CCcceEEEEC-----CEEEEEecCCc----chHHHHHHHHHHHHHHHhcCCC------CCCceEeecCCCCCCCcceEEE
Confidence            4555788764     56889986522    23456788999999884 3332      0145555544333   358999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhh----------------------------
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIA----------------------------  139 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~----------------------------  139 (334)
                      |+++|. +.....   ...+   ......++.|++..|..||+....+....                            
T Consensus        96 ~~i~G~~l~~~~~---~~l~---~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (304)
T 3sg8_A           96 TKIKGVPLTPLLL---NNLP---KQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQ  169 (304)
T ss_dssp             ECCCCEECCHHHH---HTSC---HHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             cccCCeECCcccc---ccCC---HHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCccc
Confidence            999998 321111   1122   22223445589999999997543211000                            


Q ss_pred             --------------hhhcCCCCcEEeeCCCCCceeeCC--CCCEEEEeccccccc
Q psy6542         140 --------------IFLTLSVPCLHFRDLKPANILLDE--HGHVRISDLGLACDF  178 (334)
Q Consensus       140 --------------~~~~~~~~~iiHrDlKp~NiLl~~--~~~vkl~DFGla~~~  178 (334)
                                    ...+...+.++|+|++|.||+++.  .+.+.|+||+.+..-
T Consensus       170 ~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~  224 (304)
T 3sg8_A          170 MKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS  224 (304)
T ss_dssp             HHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred             HHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence                          111244578999999999999988  456789999998643

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.43  E-value=3.9e-06  Score=76.22  Aligned_cols=143  Identities=13%  Similarity=0.006  Sum_probs=88.6

Q ss_pred             CceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCC-CcccccccceeeEEEEee-cCCeEEEEEEcc
Q psy6542          14 SKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNE-PFKKCVLLFKMNLYKVTS-EPNSHYIIGVRQ   91 (334)
Q Consensus        14 ~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~-~i~~~~~~~~v~~~~~~~-~~~~~~ivmEy~   91 (334)
                      ..-.||..     |..+++|+-.    .......+.+|.++|+.+.+. .+      -+.+.+.+.. ..+..|+||||+
T Consensus        31 ~~n~v~~v-----g~~~VlR~~~----~~~~~~~~~~E~~~L~~L~~~~~v------~VP~~~~~~~~~~g~~~~v~e~i   95 (306)
T 3tdw_A           31 FRNYAILV-----NGDWVFRFPK----SQQGADELNKEIQLLPLLVGCVKV------NIPQYVYIGKRSDGNPFVGYRKV   95 (306)
T ss_dssp             SSEEEEEE-----TTTEEEEEES----SHHHHHHHHHHHHHHHHHTTTCSS------BCCCEEEEEECTTSCEEEEEECC
T ss_pred             cceeEEEE-----CCEEEEEecC----CchHHHHHHHHHHHHHHHHhcCCC------CCCCeEeecccCCCceEEEEecc
Confidence            33467766     5788999843    122345678899999999863 21      0145555553 456678999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC------Cch-------------------h-------
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNK------NPL-------------------I-------  138 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~------~~~-------------------~-------  138 (334)
                      +|. +.....   ...+....   ..+..|+...|..||+....      .|.                   +       
T Consensus        96 ~G~~l~~~~~---~~l~~~~~---~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~  169 (306)
T 3tdw_A           96 QGQILGEDGM---AVLPDDAK---DRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLR  169 (306)
T ss_dssp             CSEECHHHHH---TTSCHHHH---HHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred             CCeECchhhh---hhCCHHHH---HHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhH
Confidence            998 322111   11122122   23344788888888875421      000                   0       


Q ss_pred             -h------h-----hhcCCCCcEEeeCCCCCceeeCC---CCCE-EEEecccccc
Q psy6542         139 -A------I-----FLTLSVPCLHFRDLKPANILLDE---HGHV-RISDLGLACD  177 (334)
Q Consensus       139 -~------~-----~~~~~~~~iiHrDlKp~NiLl~~---~~~v-kl~DFGla~~  177 (334)
                       .      -     ..+...+.++|+|++|.||+++.   ++.+ .|+||+.+..
T Consensus       170 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          170 DYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             HHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence             0      0     01236678899999999999987   4554 8999998753

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.73  E-value=7.4e-05  Score=68.82  Aligned_cols=155  Identities=11%  Similarity=0.069  Sum_probs=86.9

Q ss_pred             CCCCceEEEeceeC---C---CCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCC---CcccccccceeeEEEEeec
Q psy6542          11 SRVSKWRVKPPSLK---P---LGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNE---PFKKCVLLFKMNLYKVTSE   80 (334)
Q Consensus        11 ~~~~~~~V~~a~~~---~---~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~---~i~~~~~~~~v~~~~~~~~   80 (334)
                      +.+.+-.+|+....   .   ++..+++|+-..... .......+.+|+.+++.+...   .+        .+++.+..+
T Consensus        30 ~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpv--------P~v~~~~~~  101 (357)
T 3ats_A           30 STGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPV--------PRVRWIETT  101 (357)
T ss_dssp             TTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCC--------CCEEEEECS
T ss_pred             CCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCC--------CcEEEEccC
Confidence            34555677766543   1   256788887653220 000124567799999988632   35        677877665


Q ss_pred             C---CeEEEEEEccCCC-hhHHhhhh-----hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC-------------Cchh
Q psy6542          81 P---NSHYIIGVRQSGP-KDQISRSK-----INRYHKKLRKCFIRRTVQLLEPVHTCHSALNK-------------NPLI  138 (334)
Q Consensus        81 ~---~~~~ivmEy~~g~-l~~l~~~~-----~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~-------------~~~~  138 (334)
                      .   +..|+||||++|. +.......     ....+....   ..++.++...|.-||+....             ....
T Consensus       102 ~~~~g~~~~v~e~l~G~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~La~LH~~~~~~~~l~~~~~~~~~~~~~  178 (357)
T 3ats_A          102 GDVLGTPFFLMDYVEGVVPPDVMPYTFGDNWFADAPAERQ---RQLQDATVAALATLHSIPNAQNTFSFLTQGRTSDTTL  178 (357)
T ss_dssp             STTTSSCEEEEECCCCBCCCBTTBGGGSCSTTTTSCHHHH---HHHHHHHHHHHHHHTTCSSHHHHTGGGC-----CCHH
T ss_pred             CCccCCceEEEEecCCCChhhcCcccccccccCCCCHHHH---HHHHHHHHHHHHHHhCCCCccCChhhccCCCCCCchH
Confidence            4   3568999999987 31100000     000111111   12233666677777754310             0000


Q ss_pred             ----------------------h---hh--h--cC------CCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         139 ----------------------A---IF--L--TL------SVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       139 ----------------------~---~~--~--~~------~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                                            .   +.  +  ..      ..+.++|+|+.|.||++++++.+.|+||+.|.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~  251 (357)
T 3ats_A          179 HRHFNWVRSWYDFAVEGIGRSPLLERTFEWLQSHWPDDAAAREPVLLWGDARVGNVLYRDFQPVAVLDWEMVA  251 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTCCHHHHHSCCEEECSSCSGGGEEEETTEEEEECCGGGCE
T ss_pred             HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhCCCcccCCCceEEeCCCCCCeEEEeCCcEEEEEcccccc
Confidence                                  0   00  0  00      25779999999999999864457999999875

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.70  E-value=0.00026  Score=64.29  Aligned_cols=30  Identities=30%  Similarity=0.458  Sum_probs=26.9

Q ss_pred             CcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         147 PCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      +.++|+|+.+.|||++.++.+.|+||+.+.
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            349999999999999888889999999874

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.67  E-value=0.00019  Score=67.18  Aligned_cols=74  Identities=5%  Similarity=-0.171  Sum_probs=44.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---c--hHHhhhHHHHHHHHHhcCC--CCcccccccceeeEEEEeecCCeE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---E--SRVAKWRPYIQEIFNHLRN--EPFKKCVLLFKMNLYKVTSEPNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~--~~~~~~~~~E~~il~~l~h--~~i~~~~~~~~v~~~~~~~~~~~~   84 (334)
                      .++.-.||++....+++.|+||.......   +  .....++..|.++++.+..  +..       +.+++.+  +.+..
T Consensus        40 ~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~-------vP~~~~~--d~~~~  110 (397)
T 2olc_A           40 DGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHL-------VPRVFYS--DTEMA  110 (397)
T ss_dssp             SSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGG-------SCCEEEE--ETTTT
T ss_pred             CCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCC-------cCeEEEE--cCCcc
Confidence            35566899997766788999998764221   0  1123356679999988753  222       1466644  33456


Q ss_pred             EEEEEccCCC
Q psy6542          85 YIIGVRQSGP   94 (334)
Q Consensus        85 ~ivmEy~~g~   94 (334)
                      ++||||++|.
T Consensus       111 ~lvmE~l~g~  120 (397)
T 2olc_A          111 VTVMEDLSHL  120 (397)
T ss_dssp             EEEECCCTTS
T ss_pred             EEEEEeCCCc
Confidence            8999999874

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.51  E-value=0.00086  Score=59.80  Aligned_cols=69  Identities=9%  Similarity=-0.022  Sum_probs=44.4

Q ss_pred             CCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCC-CcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          13 VSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNE-PFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        13 ~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~-~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +..+.||+.... +|+.|.+|+-......  ....+..|...|+.|.-. .+      -+.+.+.+.    .-++||||+
T Consensus        26 G~~~~vyrv~l~-DG~~~~vK~~~~~~~~--~~~~~~~Ea~~L~~L~~~~~v------pvP~v~~~~----~~~lv~e~l   92 (288)
T 3f7w_A           26 SHRWHLYRVELA-DGTPLFVKALPDDAPA--LDGLFRAEALGLDWLGRSFGS------PVPQVAGWD----DRTLAMEWV   92 (288)
T ss_dssp             ETTEEEEEEEET-TSCEEEEEECCTTCCC--CTTHHHHHHHHHHHHTCSTTC------CSCCEEEEE----TTEEEEECC
T ss_pred             CCCeEEEEEEEC-CCCEEEEEEeCCCCcc--hhhHHHHHHHHHHHHHhhCCC------CcceEEecc----CceEEEEee
Confidence            456688887654 5889999976543321  223567899999988532 21      115555543    237899999


Q ss_pred             CCC
Q psy6542          92 SGP   94 (334)
Q Consensus        92 ~g~   94 (334)
                      .++
T Consensus        93 ~~~   95 (288)
T 3f7w_A           93 DER   95 (288)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            876

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.42  E-value=0.00096  Score=60.61  Aligned_cols=65  Identities=3%  Similarity=-0.104  Sum_probs=47.7

Q ss_pred             ceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCC---CCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          15 KWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRN---EPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        15 ~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h---~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      .-.+|+...  .+..+++|+-...     ....+..|...|+.|..   ..+        .+.+.+....+..|+||||+
T Consensus        49 ~n~~y~v~~--~~~~~vlK~~~~~-----~~~~~~~E~~~L~~L~~~~~v~V--------P~vl~~~~~~g~~~lvme~l  113 (312)
T 3jr1_A           49 MNEIWLIND--EVQTVFVKINERS-----YRSMFRAEADQLALLAKTNSINV--------PLVYGIGNSQGHSFLLLEAL  113 (312)
T ss_dssp             SSEEEEEES--SSCEEEEEEEEGG-----GHHHHHHHHHHHHHHHHTTSSBC--------CCEEEEEECSSEEEEEEECC
T ss_pred             ceeeeEEEE--CCCeEEEEeCCcc-----cHHHHHHHHHHHHHHHhhCCCCc--------ceEEEEeecCCceEEEEEec
Confidence            345666654  3678889987632     23457789999998853   345        78888888778899999999


Q ss_pred             CCC
Q psy6542          92 SGP   94 (334)
Q Consensus        92 ~g~   94 (334)
                      +|.
T Consensus       114 ~G~  116 (312)
T 3jr1_A          114 NKS  116 (312)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            987

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=97.17  E-value=0.0027  Score=60.76  Aligned_cols=66  Identities=14%  Similarity=-0.047  Sum_probs=42.0

Q ss_pred             ceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC
Q psy6542          15 KWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP   94 (334)
Q Consensus        15 ~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~   94 (334)
                      .-.+|++....++..+.+|+-......   .-...+|..+++.|...++       ..++++.+. +   .+||||++|.
T Consensus       121 tN~~y~v~~~~~~~~~vLRi~g~~~~~---~idR~~E~~vl~~L~~~gl-------~P~ll~~~~-~---G~v~e~I~G~  186 (458)
T 2qg7_A          121 TNILIKVKDMSKQAKYLIRLYGPKTDE---IINREREKKISCILYNKNI-------AKKIYVFFT-N---GRIEEFMDGY  186 (458)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECC-CCS---CSCHHHHHHHHHHHTTSSS-------BCCEEEEET-T---EEEEECCCSE
T ss_pred             EeEEEEEEECCCCceEEEEECCCChhh---hcCHHHHHHHHHHHHhcCC-------CCCEEEEeC-C---eEEEEeeCCc
Confidence            346777766554578888877543211   1112469999999986665       257777663 2   2499999985

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.06  E-value=0.0019  Score=60.24  Aligned_cols=125  Identities=13%  Similarity=0.080  Sum_probs=73.1

Q ss_pred             CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC-hhHHhhhhhh
Q psy6542          26 LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-KDQISRSKIN  104 (334)
Q Consensus        26 ~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-l~~l~~~~~~  104 (334)
                      ++..|.+|+-.... .  ......+|..+++.|...++       ..++++.+.+    .+||||++|. +.   .... 
T Consensus        81 ~~~~~vlR~~g~~~-~--~~~~~~rE~~vl~~L~~~gv-------~P~ll~~~~~----g~v~e~i~G~~l~---~~~l-  142 (379)
T 3feg_A           81 EPREVLLRLYGAIL-Q--GVDSLVLESVMFAILAERSL-------GPQLYGVFPE----GRLEQYIPSRPLK---TQEL-  142 (379)
T ss_dssp             CCSEEEEEECC----C--CHHHHHHHHHHHHHHHHTTS-------SCCEEEEETT----EEEEECCSEEECC---GGGG-
T ss_pred             CCCeEEEEECCCcc-c--hHHHHHHHHHHHHHHHhcCC-------CCeEEEEcCC----ccEEEEecCccCC---hhHh-
Confidence            35678888753211 1  12234579999988875444       2566766643    2899999986 21   0000 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcCCCC-C--c-------------hhhh---------------------------h
Q psy6542         105 RYHKKLRKCFIRRTVQLLEPVHTCHSALNK-N--P-------------LIAI---------------------------F  141 (334)
Q Consensus       105 ~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~-~--~-------------~~~~---------------------------~  141 (334)
                        .  ..    .+..+++..|.-||....+ +  +             +.+.                           -
T Consensus       143 --~--~p----~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~L~  214 (379)
T 3feg_A          143 --R--EP----VLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLE  214 (379)
T ss_dssp             --G--CH----HHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHHHHH
T ss_pred             --C--CH----HHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHh
Confidence              0  00    1123566666666654211 0  0             0000                           0


Q ss_pred             hcCCCCcEEeeCCCCCceeeCCC----CCEEEEeccccc
Q psy6542         142 LTLSVPCLHFRDLKPANILLDEH----GHVRISDLGLAC  176 (334)
Q Consensus       142 ~~~~~~~iiHrDlKp~NiLl~~~----~~vkl~DFGla~  176 (334)
                      .......++|+|+.+.|||++.+    +.+.++||..|.
T Consensus       215 ~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          215 STPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             TSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             hcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            11233467899999999999876    789999999886

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.91  E-value=0.0055  Score=54.83  Aligned_cols=130  Identities=11%  Similarity=-0.038  Sum_probs=73.7

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc-CCC-
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ-SGP-   94 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~-~g~-   94 (334)
                      ++|++      ..+.+|+-.....   ......+|+.+++.+....+       ..+++.+.  .+.-++++||+ +|. 
T Consensus        33 ~~~~~------~~~vlR~~~~~~~---~~~~r~~E~~~l~~l~~~g~-------~P~~~~~~--~~~~~~v~e~i~~g~~   94 (301)
T 3dxq_A           33 LVFRA------GDLCLRIPGKGTE---EYINRANEAVAAREAAKAGV-------SPEVLHVD--PATGVMVTRYIAGAQT   94 (301)
T ss_dssp             EEEEE------TTEEEEEECC-------CCCHHHHHHHHHHHHHTTS-------SCCEEEEC--TTTCCEEEECCTTCEE
T ss_pred             cccee------eeEEEECCCCCcc---ceeCHHHHHHHHHHHHHcCC-------CCceEEEE--CCCCEEEEeecCCCcc
Confidence            55555      5688887764321   11223458888888765444       13555443  33347899999 554 


Q ss_pred             hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCch----------------------h--------------
Q psy6542          95 KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPL----------------------I--------------  138 (334)
Q Consensus        95 l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~----------------------~--------------  138 (334)
                      ++.-...        ...   .+..+++..|.-||.....-+.                      +              
T Consensus        95 l~~~~~~--------~~~---~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  163 (301)
T 3dxq_A           95 MSPEKFK--------TRP---GSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVR  163 (301)
T ss_dssp             CCHHHHH--------HST---THHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHH
T ss_pred             CCHhhHh--------hhH---HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHH
Confidence            3110000        000   1223677777778875421110                      0              


Q ss_pred             hh-hhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         139 AI-FLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       139 ~~-~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      .. -.....+.++|+|+.+.||+ ..++.+.++||..|.
T Consensus       164 ~~l~~~~~~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~  201 (301)
T 3dxq_A          164 SALAAHPLPLAACHCDPLCENFL-DTGERMWIVDWEYSG  201 (301)
T ss_dssp             HHHHSSCCCCEEECSCCCGGGEE-ECSSCEEECCCTTCE
T ss_pred             HHHHhcCCCceeeccCCCcCCEE-ECCCCEEEEeccccc
Confidence            00 01234566899999999999 556778999999875

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=96.90  E-value=0.0014  Score=60.68  Aligned_cols=30  Identities=20%  Similarity=0.305  Sum_probs=25.0

Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      .+.++|+|+.+.|||++.++ +.|+||..|.
T Consensus       211 ~~~l~HgDl~~~Nil~~~~~-~~lID~e~a~  240 (369)
T 3c5i_A          211 TIVFCHNDLQENNIINTNKC-LRLIDFEYSG  240 (369)
T ss_dssp             CEEEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred             CeEEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence            35688999999999998655 8999999875

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.89  E-value=0.0042  Score=58.50  Aligned_cols=31  Identities=13%  Similarity=0.281  Sum_probs=27.4

Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEecccccc
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLACD  177 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~  177 (334)
                      .+.++|+|++|.||+++.++ ++++||+.+..
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            46699999999999998877 99999998863

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.76  E-value=0.0059  Score=57.89  Aligned_cols=65  Identities=11%  Similarity=-0.054  Sum_probs=40.6

Q ss_pred             ceEEEeceeCC-------CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          15 KWRVKPPSLKP-------LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        15 ~~~V~~a~~~~-------~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      .-.||++....       ++..+.+|+-.....    ...+.+|..+++.|...++       ..++++.+.+    .+|
T Consensus        86 tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~----~~~li~E~~~l~~L~~~g~-------~P~l~~~~~~----g~v  150 (429)
T 1nw1_A           86 SNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET----ESHLVAESVIFTLLSERHL-------GPKLYGIFSG----GRL  150 (429)
T ss_dssp             TEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC----HHHHHHHHHHHHHHHHTTS-------SSCEEEEETT----EEE
T ss_pred             ccceEEEEeCCCccccCCCCceEEEEEeCCCCc----HHHHHHHHHHHHHHHhCCC-------CCcEEEEeCC----CEE
Confidence            34677766542       357889998743211    1233469999988865444       2566666542    389


Q ss_pred             EEccCCC
Q psy6542          88 GVRQSGP   94 (334)
Q Consensus        88 mEy~~g~   94 (334)
                      |||++|.
T Consensus       151 ~e~l~G~  157 (429)
T 1nw1_A          151 EEYIPSR  157 (429)
T ss_dssp             ECCCCEE
T ss_pred             EEEeCCc
Confidence            9999874

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.70  E-value=0.014  Score=52.97  Aligned_cols=32  Identities=22%  Similarity=0.154  Sum_probs=27.7

Q ss_pred             CCcEEeeCCCCCceeeCCC----CCEEEEecccccc
Q psy6542         146 VPCLHFRDLKPANILLDEH----GHVRISDLGLACD  177 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~----~~vkl~DFGla~~  177 (334)
                      .+.++|+|+.+.||+++.+    +.+.|+||+.|..
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            4678999999999999875    6799999998863

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.61  E-value=0.014  Score=52.57  Aligned_cols=29  Identities=24%  Similarity=0.087  Sum_probs=25.1

Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      .+.++|+|+++.|||++ + .+.|+||+.+.
T Consensus       194 ~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~  222 (328)
T 1zyl_A          194 TVLRLHGDCHAGNILWR-D-GPMFVDLDDAR  222 (328)
T ss_dssp             CCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred             CeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence            34578999999999999 4 89999999875

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=95.82  E-value=0.016  Score=54.72  Aligned_cols=29  Identities=21%  Similarity=0.423  Sum_probs=25.8

Q ss_pred             CcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         147 PCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      ..++|+|+.+.||+ +.++.+.++||..|.
T Consensus       262 ~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~  290 (424)
T 3mes_A          262 LVFAHNDLQENNLL-QTQNNIRMIDYEYSA  290 (424)
T ss_dssp             EEEECSCCCGGGEE-ECSSCEEECCCTTCE
T ss_pred             ceEECCCCCcccee-cCCCcEEEEecccCC
Confidence            45789999999999 777889999999986

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=93.30  E-value=0.022  Score=51.15  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=25.7

Q ss_pred             CcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         147 PCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       147 ~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      +.++|+|+.+.|||++.++.+.|+||+.+.
T Consensus       187 ~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          187 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            458999999999999887666899999774

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=90.42  E-value=0.097  Score=47.63  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=28.0

Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEecccccc
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLACD  177 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~  177 (334)
                      .+.++|+|+.+.||+++.++.+.|+||+.+..
T Consensus       205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            45689999999999999888899999987753

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=81.50  E-value=0.72  Score=42.82  Aligned_cols=29  Identities=24%  Similarity=0.391  Sum_probs=24.8

Q ss_pred             cEEeeCCCCCceee------CCCCCEEEEeccccc
Q psy6542         148 CLHFRDLKPANILL------DEHGHVRISDLGLAC  176 (334)
Q Consensus       148 ~iiHrDlKp~NiLl------~~~~~vkl~DFGla~  176 (334)
                      .++|.|+.+.|||+      +.++.+.++||-+|.
T Consensus       245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~  279 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS  279 (401)
T ss_dssp             EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred             eeEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence            45799999999999      456779999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	1e-11
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-08
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-07
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-07
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	5e-07
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	7e-07
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-07
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	8e-07
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-06
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-06
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-06
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-06
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	5e-06
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	5e-06
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	6e-06
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	6e-06
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-05
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-05
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-05
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-05
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-05
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-05
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-05
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	6e-05
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	8e-05
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-04
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-04
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-04
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-04
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-04
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-04
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	5e-04
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	6e-04
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	6e-04
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	7e-04
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	7e-04
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	0.001
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	0.001
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	0.002
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	0.002
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	0.002
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	0.002
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	0.003
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	0.004

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 14/128 (10%)

Query: 186 SVESDCILHGYIKKLGGPFVSAWQTRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQD 245
           ++  DCI+HGY+ K+G PF++ WQ RY  LFPNRLE   E    +  L   +     S +
Sbjct: 5   ALGKDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLTMEEI---QSVE 61

Query: 246 LITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKCSQELLG 305
              +K  +C+ LK+    + VL               +  L +W   LR A++ +Q+L+ 
Sbjct: 62  ETQIKERKCLLLKIRGGKQFVLQ-----------CDSDPELVQWKKELRDAYREAQQLVQ 110

Query: 306 SMARKAGK 313
            + +   K
Sbjct: 111 RVPKMKNK 118

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (127), Expect = 2e-08
 Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 19/113 (16%)

Query: 72  MNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
           + +      P+    I    +G       S+   + +   + +     +++  +   H+ 
Sbjct: 70  VCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAA---EIILGLEHMHN- 125

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPH 184
                            + +RDLKPANILLDEHGHVRISDLGLACDFSKKKPH
Sbjct: 126 ---------------RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH 163

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 19/115 (16%)

Query: 73  NLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSAL 132
            LY    +    Y+I              K++++ ++    +I    +L   +  CHS  
Sbjct: 70  RLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYIT---ELANALSYCHSK- 125

Query: 133 NKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV 187
                           +  RD+KP N+LL   G ++I+D G +      +     
Sbjct: 126 ---------------RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLC 165

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (115), Expect = 4e-07
 Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 20/128 (15%)

Query: 72  MNLYKVTSEPNSHYII-GVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS 130
           ++L  V ++     II    ++G  D   R    ++        +R    +   +     
Sbjct: 90  IHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLR---GIAAGMKYLA- 145

Query: 131 ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESD 190
                                RDL   NIL++ +   ++SD GL+          +  S 
Sbjct: 146 ---------------DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSA 190

Query: 191 CILHGYIK 198
                 I+
Sbjct: 191 LGGKIPIR 198

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 5e-07
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 121 LLEPVHTCHSALNKNPLIAIFLTLS--VPCLHF-----RDLKPANILLDEHGHVRISDLG 173
           L   +H   +      LI I    +  +  LH      RDLK  NI L E   V+I D G
Sbjct: 90  LYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 149

Query: 174 LACDFSKKKPHASVESDCILHGYI 197
           LA   S+       E       ++
Sbjct: 150 LATVKSRWSGSHQFEQLSGSILWM 173

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 7e-07
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 102 KINRYHKKLRKCFIRR-TVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANIL 160
           K  +  + L + F+ R   QL   +  CH   +    +          LH RDLKPAN+ 
Sbjct: 98  KGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTV----------LH-RDLKPANVF 146

Query: 161 LDEHGHVRISDLGLACDFSKKKPHAS 186
           LD   +V++ D GLA   +     A 
Sbjct: 147 LDGKQNVKLGDFGLARILNHDTSFAK 172

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 8e-07
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 20/116 (17%)

Query: 72  MNLYKVTSEPNSHYIIGVR-QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS 130
           + L       N+ +I+      G  D +         +   +   +   Q L+ ++  H 
Sbjct: 72  VKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCK---QTLDALNYLHD 128

Query: 131 ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
                             +H RDLK  NIL    G ++++D G++   ++      
Sbjct: 129 N---------------KIIH-RDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRD 168

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 8e-07
 Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 18/116 (15%)

Query: 72  MNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
           +  Y          I      G        K  R  +++          +++ +      
Sbjct: 67  VGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI---AVIKGLTYLREK 123

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV 187
                            +  RD+KP+NIL++  G +++ D G++        ++ V
Sbjct: 124 HK---------------IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 164

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 19/110 (17%)

Query: 72  MNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
           + ++    +    ++I     G +      K  R+   + K +     ++   +   HS 
Sbjct: 67  IRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAA---EVCLALEYLHSK 123

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKK 181
                            ++ RDLKP NILLD++GH++I+D G A      
Sbjct: 124 ---------------DIIY-RDLKPENILLDKNGHIKITDFGFAKYVPDV 157

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 18/114 (15%)

Query: 73  NLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSAL 132
            LY V SE   + +      G      + +  +Y +  +   +    Q+   +       
Sbjct: 76  QLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDM--AAQIASGMAYVE--- 130

Query: 133 NKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
                              RDL+ ANIL+ E+   +++D GLA      +  A 
Sbjct: 131 -------------RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 171

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 19/126 (15%)

Query: 72  MNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
           + LY    +    Y         +      KI  + +   + +     +++  +   H  
Sbjct: 71  VKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTA---EIVSALEYLHG- 126

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDC 191
                            +  RDLKP NILL+E  H++I+D G A   S +   A   S  
Sbjct: 127 ---------------KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV 171

Query: 192 ILHGYI 197
               Y+
Sbjct: 172 GTAQYV 177

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 19/109 (17%)

Query: 72  MNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
           + L       ++  ++        + I +           K ++      L+ +   H  
Sbjct: 63  IGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYML---MTLQGLEYLHQ- 118

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSK 180
                            +  RDLKP N+LLDE+G ++++D GLA  F  
Sbjct: 119 ---------------HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGS 152

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 19/126 (15%)

Query: 72  MNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
           +  Y    E N  Y+     SG +      +I            R   QL+  V   H  
Sbjct: 66  VKFYGHRREGNIQYLFLEYCSGGEL---FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 122

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDC 191
                             H RD+KP N+LLDE  +++ISD GLA  F        +   C
Sbjct: 123 ---------------GITH-RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 166

Query: 192 ILHGYI 197
               Y+
Sbjct: 167 GTLPYV 172

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 5e-06
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 12/132 (9%)

Query: 73  NLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSAL 132
           NL    +     Y+I             + +    +K  +  I    Q         + L
Sbjct: 105 NLLGACTLSGPIYLIFEYCCY---GDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVL 161

Query: 133 NKNPLIAIFLTL--------SVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPH 184
               L+     +           C+H RDL   N+L+     V+I D GLA D      +
Sbjct: 162 TFEDLLCFAYQVAKGMEFLEFKSCVH-RDLAARNVLVTHGKVVKICDFGLARDIMSDSNY 220

Query: 185 ASVESDCILHGY 196
               +  +   +
Sbjct: 221 VVRGNARLPVKW 232

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 6e-06
 Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 19/116 (16%)

Query: 70  FKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCH 129
           F   L       +    +    +G +     S+   + ++  + +     +++  +   H
Sbjct: 66  FLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGA---EIVSALEYLH 122

Query: 130 SALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHA 185
           S                  + +RD+K  N++LD+ GH++I+D GL  +        
Sbjct: 123 S----------------RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 6e-06
 Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 20/121 (16%)

Query: 72  MNLYKVTSEPNSHYIIG-VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS 130
           + L  V S+     II    ++G  D+  R K   +        +R    +   +    +
Sbjct: 72  IRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLR---GIAAGMKYLAN 128

Query: 131 ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESD 190
                                RDL   NIL++ +   ++SD GL+             S 
Sbjct: 129 ----------------MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSG 172

Query: 191 C 191
            
Sbjct: 173 G 173

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 19/110 (17%)

Query: 73  NLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSAL 132
                    ++ +++     G    +         +             L+ +   HS  
Sbjct: 79  QYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTH---GALQGLAYLHSH- 134

Query: 133 NKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKK 182
                           +H  D+K  NILL E G V++ D G A   +   
Sbjct: 135 --------------NMIHR-DVKAGNILLSEPGLVKLGDFGSASIMAPAN 169

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 19/132 (14%)

Query: 53  EIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRK 112
           +I   L++E     + + +           S Y++          +  + + ++     K
Sbjct: 61  KILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIK 120

Query: 113 CFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDL 172
             ++    LL  ++  H                   +  RD+K AN+L+   G ++++D 
Sbjct: 121 RVMQ---MLLNGLYYIHR----------------NKILHRDMKAANVLITRDGVLKLADF 161

Query: 173 GLACDFSKKKPH 184
           GLA  FS  K  
Sbjct: 162 GLARAFSLAKNS 173

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 144 LSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
           L+      RDL   NILL E   V+I D GLA D  K   +       +   ++
Sbjct: 150 LASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWM 203

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 19/126 (15%)

Query: 72  MNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
             L  +        I  +   G      R   +    +    +  +  + +  +      
Sbjct: 74  CRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR-- 131

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDC 191
                            L  RDL   N+L+    HV+I+D GLA     ++     E   
Sbjct: 132 -----------------LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 174

Query: 192 ILHGYI 197
           +   ++
Sbjct: 175 VPIKWM 180

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 16/68 (23%)

Query: 120 QLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFS 179
            LLE +   H                   +  RDLKP NILLD+  +++++D G +C   
Sbjct: 118 ALLEVICALHKL----------------NIVHRDLKPENILLDDDMNIKLTDFGFSCQLD 161

Query: 180 KKKPHASV 187
             +    V
Sbjct: 162 PGEKLREV 169

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 152 RDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGY 196
           RDL   N L+ E+  V+I+D GL+ +      + +  +D I   +
Sbjct: 164 RDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRW 208

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 72  MNLYKVTSEPNSHYIIGVRQS-GPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS 130
           + LY V ++    +II    + G      R   +R+  +      +   + +E + +   
Sbjct: 62  VQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLES--- 118

Query: 131 ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV 187
                                RDL   N L+++ G V++SD GL+      +  +SV
Sbjct: 119 ----------------KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSV 159

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 100 RSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI 159
              +NRY   +    I+  +     +   H          +         H RDLK  NI
Sbjct: 89  FDYLNRYTVTVEGM-IKLALSTASGLAHLHME-------IVGTQGKPAIAH-RDLKSKNI 139

Query: 160 LLDEHGHVRISDLGLACDFSKKKPHASVES 189
           L+ ++G   I+DLGLA           +  
Sbjct: 140 LVKKNGTCCIADLGLAVRHDSATDTIDIAP 169

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 138 IAIFLTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV 187
           +A  ++ ++  L       RDL   N L+ E+  V+++D GL+   +     A  
Sbjct: 120 MATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 174

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 145 SVPCLHFRDLKPANILL-DEHGHVRISDLGLA 175
           + P +H RDLK  NI +    G V+I DLGLA
Sbjct: 132 TPPIIH-RDLKCDNIFITGPTGSVKIGDLGLA 162

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 147 PCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
            C+  RDL   N L+ E+  +++SD G+       +  +S
Sbjct: 120 ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS 159

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 21/120 (17%), Positives = 33/120 (27%), Gaps = 19/120 (15%)

Query: 72  MNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
           + LY V   P    +  +   G      R     +       +     Q+ E +    S 
Sbjct: 74  IRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAV---QVAEGMGYLES- 129

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDC 191
                               RDL   N+LL     V+I D GL     +   H  ++   
Sbjct: 130 ---------------KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHR 174

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 20/108 (18%), Positives = 30/108 (27%), Gaps = 3/108 (2%)

Query: 72  MNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
           +NL          Y+               K               T   L      H A
Sbjct: 74  INLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFA 133

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFS 179
              +    +        +H RDL   NIL+ E+   +I+D GL+    
Sbjct: 134 --ADVARGMDYLSQKQFIH-RDLAARNILVGENYVAKIADFGLSRGQE 178

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 138 IAIFLTLSVPCLH-----FRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCI 192
               +   +  +H      RDLKP+N+LL+    ++I D GLA        H    ++ +
Sbjct: 114 FLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYV 173

Query: 193 LHGY 196
              +
Sbjct: 174 ATRW 177

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 20/115 (17%)

Query: 72  MNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
           +N        +  +++    +G              +       R   + L+ +   HS 
Sbjct: 80  VNYLDSYLVGDELWVVMEYLAG-GSLTDVVTETCMDEGQIAAVCR---ECLQALEFLHSN 135

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
                            +  RD+K  NILL   G V+++D G     + ++   S
Sbjct: 136 ----------------QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRS 174

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 144 LSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVES 189
           L       RDL   N+LL    + +ISD GL+        + +  S
Sbjct: 125 LEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARS 170

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 18/135 (13%)

Query: 53  EIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRK 112
            +  HL        V LF +     T       +  V +   +D  +            +
Sbjct: 59  AVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTL--VFEHVDQDLTTYLDKVPEPGVPTE 116

Query: 113 CFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDL 172
                  QLL  +   HS                  +  RDLKP NIL+   G ++++D 
Sbjct: 117 TIKDMMFQLLRGLDFLHSH----------------RVVHRDLKPQNILVTSSGQIKLADF 160

Query: 173 GLACDFSKKKPHASV 187
           GLA  +S +    SV
Sbjct: 161 GLARIYSFQMALTSV 175

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 6e-04
 Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 19/114 (16%)

Query: 73  NLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSAL 132
            L  V +E     I+ +   G      + +           +     QL   +    S  
Sbjct: 72  KLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAY---QLSTALAYLES-- 126

Query: 133 NKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
                              RD+   N+L+  +  V++ D GL+        + +
Sbjct: 127 --------------KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA 166

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 26/150 (17%)

Query: 36  RHRPHESRVA-----KWRPYIQEIFNHLRNEP--FKKCVLLFKMNLYKVTSEPNSHYIIG 88
           +H+   +  A     K +    +   H  NE    +     F + L     + ++ Y++ 
Sbjct: 61  KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120

Query: 89  VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPC 148
              +G +      +I R+ +   + +     Q++      HS                  
Sbjct: 121 EYVAGGEMFSHLRRIGRFSEPHARFYAA---QIVLTFEYLHSL---------------DL 162

Query: 149 LHFRDLKPANILLDEHGHVRISDLGLACDF 178
           ++ RDLKP N+L+D+ G+++++D G A   
Sbjct: 163 IY-RDLKPENLLIDQQGYIQVTDFGFAKRV 191

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 138 IAIFLTLSVPCLHF-----RDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
           +A  +   +  +       RDL+ ANIL+ +    +I+D GLA      +  A 
Sbjct: 114 MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAR 167

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 28/171 (16%)

Query: 16  WRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQE--IFNHLRNEPFKKCVLLFKMN 73
           + V+  S    G    + +L+      +         E  +  H+R  PF        + 
Sbjct: 41  FLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFL-------VT 93

Query: 74  LYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALN 133
           L+         ++I    +G +       +++  +           +++  +   H    
Sbjct: 94  LHYAFQTETKLHLILDYINGGELFT---HLSQRERFTEHEVQIYVGEIVLALEHLH---- 146

Query: 134 KNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPH 184
           K  +I            +RD+K  NILLD +GHV ++D GL+ +F   +  
Sbjct: 147 KLGII------------YRDIKLENILLDSNGHVVLTDFGLSKEFVADETE 185

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 19/112 (16%)

Query: 75  YKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNK 134
           + V        ++         +   S       ++ K F+    QLL+ +  CH     
Sbjct: 67  HDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLF---QLLKGLGFCH----- 118

Query: 135 NPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
                         +  RDLKP N+L++ +G +++++ GLA  F       S
Sbjct: 119 -----------SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYS 159

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 17/115 (14%)

Query: 84  HYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRR-TVQLLEPVHTCHSALNKNPLIAIFL 142
           +++   R S    + S + +      L    +   + Q+ + +    S            
Sbjct: 116 NFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK----------- 164

Query: 143 TLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYI 197
                C+H RDL   NILL      +I D GLA D      +    +  +   ++
Sbjct: 165 ----NCIH-RDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWM 214

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 19/112 (16%)

Query: 73  NLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSAL 132
            LY V        ++         ++             K F+    QLL  +  CH   
Sbjct: 64  KLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLL---QLLNGIAYCHD-- 118

Query: 133 NKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPH 184
                           +  RDLKP N+L++  G ++I+D GLA  F      
Sbjct: 119 --------------RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK 156

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 144 LSVPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDC 191
           L       RDL   N+LL    + +ISD GL+      + +   ++  
Sbjct: 123 LEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHG 170

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 23/115 (20%)

Query: 72  MNLYKVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRR-TVQLLEPVHTCHS 130
           + L  +  +P S     V      + ++ +   + ++ L    IR    ++L+ +  CHS
Sbjct: 93  ITLADIVKDPVSRTPALVF-----EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHS 147

Query: 131 ALNKNPLIAIFLTLSVPCLHFRDLKPANILLD-EHGHVRISDLGLACDFSKKKPH 184
                             +  RD+KP N+++D EH  +R+ D GLA  +   + +
Sbjct: 148 M----------------GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY 186

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 147 PCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 186
                RDL   N +LDE   V+++D GLA D   K+  + 
Sbjct: 149 KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV 188

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 22/118 (18%)

Query: 73  NLYKVTSEPNSHYII-GVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA 131
           NL+    + N   +I      G   +    + N+  +     ++R   Q+ + +   H  
Sbjct: 87  NLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMR---QVCKGLCHMHEN 143

Query: 132 LNKNPLIAIFLTLSVPCLHFRDLKPANILL--DEHGHVRISDLGLACDFSKKKPHASV 187
                                DLKP NI+        +++ D GL      K+     
Sbjct: 144 ----------------NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVT 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.98
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.98
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.98
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.98
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.97
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.97
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.92
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.86
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.22
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.19
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	97.34
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.07
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.01
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	93.43

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-40  Score=294.20  Aligned_cols=186  Identities=18%  Similarity=0.204  Sum_probs=151.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+...||+|.++.+|+.||||++.+... +....+.+.+|+++++.++||||        |++++++.+++.+||||||
T Consensus        16 ~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnI--------v~~~~~~~~~~~~~ivmEy   87 (263)
T d2j4za1          16 KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNI--------LRLYGYFHDATRVYLILEY   87 (263)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             cCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCC--------CeEEEEEEECCEEEEEEee
Confidence            57888999999999999999999986543 23345577889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+|| +..+.... ..+   .+..+..++.||+.||.|||+++                |+||||||+|||+++++.+||
T Consensus        88 ~~~g~L~~~l~~~-~~l---~e~~~~~i~~qi~~al~~lH~~~----------------ivHrDiKp~Nill~~~~~~kl  147 (263)
T d2j4za1          88 APLGTVYRELQKL-SKF---DEQRTATYITELANALSYCHSKR----------------VIHRDIKPENLLLGSAGELKI  147 (263)
T ss_dssp             CTTCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTTSCEEE
T ss_pred             cCCCcHHHHHhhc-CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeeeeeccccceecCCCCEee
Confidence            9988 43332322 233   44556677789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +|||+|+...........||+.|++||+.. ..|+ .+|+|+   ++|++++ +..||.+.+
T Consensus       148 ~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~-G~~Pf~~~~  208 (263)
T d2j4za1         148 ADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV-GKPPFEANT  208 (263)
T ss_dssp             CCCCSCSCCCCCCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHH-SSCTTCCSS
T ss_pred             cccceeeecCCCcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhc-CCCCCCCCC
Confidence            999999988777777788999999999853 3344 566666   5566555 566886654

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-39  Score=294.57  Aligned_cols=183  Identities=14%  Similarity=0.138  Sum_probs=149.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||+++.....  ..+.+.+|+++|+.++||||        |++++++.+++.+|||||||
T Consensus        30 ~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~--~~~~~~~E~~il~~l~HpnI--------v~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          30 QGASGTVYTAMDVATGQEVAIRQMNLQQQP--KKELIINEILVMRENKNPNI--------VNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             CSSSCEEEEEEBTTTCCEEEEEEEEGGGCS--CHHHHHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             cCcCcEEEEEEECCCCCEEEEEEEecccCh--HHHHHHHHHHHHHhCCCCCE--------eeEeEEEEECCEEEEEEEec
Confidence            688899999999999999999999865443  23567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|| +..+...  +.+   .+..+..++.||+.||.|||+++                |+||||||+|||++.+|.+||+
T Consensus       100 ~gg~L~~~~~~--~~l---~~~~~~~i~~qi~~aL~yLH~~~----------------iiHrDiKp~NILl~~~~~vkl~  158 (293)
T d1yhwa1         100 AGGSLTDVVTE--TCM---DEGQIAAVCRECLQALEFLHSNQ----------------VIHRDIKSDNILLGMDGSVKLT  158 (293)
T ss_dssp             TTCBHHHHHHH--SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTCCEEEC
T ss_pred             CCCcHHHHhhc--cCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CcccCCcHHHeEECCCCcEeec
Confidence            998 5444332  233   44556677789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+|+.+....  ....+||+.|++||+.. ..| ..+|+|+   ++|++++ +.+||.+.+
T Consensus       159 DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemlt-G~~Pf~~~~  220 (293)
T d1yhwa1         159 DFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE-GEPPYLNEN  220 (293)
T ss_dssp             CCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHH-SSCTTTTSC
T ss_pred             cchhheeeccccccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhh-CCCCCCCCC
Confidence            999999775443  34567999999999853 334 4566666   6666655 667886654

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-39  Score=290.94  Aligned_cols=185  Identities=21%  Similarity=0.147  Sum_probs=144.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+...||+|.++.+|+.||||+++...... ..+.+.+|+++|++++||||        |++++++.+++.+|||||||
T Consensus        15 ~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~Ei~~l~~l~HpnI--------v~~~~~~~~~~~~~ivmEy~   85 (271)
T d1nvra_          15 EGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKMLNHENV--------VKFYGHRREGNIQYLFLEYC   85 (271)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHTCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             cCcCeEEEEEEECCCCCEEEEEEEehhhcch-HHHHHHHHHHHHHhCCCCCE--------eeEeeeeccCceeEEEEecc
Confidence            5788999999999999999999998765422 34578899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|| +..+.... ..+   .+..+..++.||+.||.|||+++                |+||||||+|||+++++.+||+
T Consensus        86 ~gg~L~~~l~~~-~~l---~e~~~~~i~~qi~~al~ylH~~~----------------IiHrDiKp~NILl~~~~~~KL~  145 (271)
T d1nvra_          86 SGGELFDRIEPD-IGM---PEPDAQRFFHQLMAGVVYLHGIG----------------ITHRDIKPENLLLDERDNLKIS  145 (271)
T ss_dssp             TTEEGGGGSBTT-TBC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEECTTCCEEEC
T ss_pred             CCCcHHHHHhcC-CCC---CHHHHHHHHHHHHHHHHHHHHcC----------------CccCcccHHHEEECCCCCEEEc
Confidence            998 43332221 233   44555667789999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC----CCccccCcccccccccc-cc-CCc-ceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK----PHASVESDCILHGYIKK-LG-GPF-VSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~-~~~-~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+|+......    ....+||+.|++||+.. .. ++. +|+|+   ++|++++ +.+||...+
T Consensus       146 DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~-G~~pf~~~~  210 (271)
T d1nvra_         146 DFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLA-GELPWDQPS  210 (271)
T ss_dssp             CCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHH-SSCSCSSSS
T ss_pred             cchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHh-CCCCCCCCC
Confidence            999998764332    34567999999999853 33 444 56677   5566655 666776554

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-39  Score=296.36  Aligned_cols=228  Identities=15%  Similarity=0.023  Sum_probs=170.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.||+|.++.+|+.||||+++.... +....+.+.+|+++|++++||||        |++++++.+++.+||||||
T Consensus        25 ~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnI--------v~~~~~~~~~~~~~iv~E~   96 (309)
T d1u5ra_          25 HGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNT--------IQYRGCYLREHTAWLVMEY   96 (309)
T ss_dssp             ECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTB--------CCEEEEEEETTEEEEEEEC
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCE--------eeEEEEEEECCEEEEEEEe
Confidence            57888999999999999999999987665 34455678899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |.|| ++.+... ...+   .+..+..++.||+.||.|||+++                |+||||||+|||+++++.+||
T Consensus        97 ~~~g~l~~~~~~-~~~l---~e~~~~~i~~qi~~aL~yLH~~~----------------iiHrDiKp~NILl~~~~~~Kl  156 (309)
T d1u5ra_          97 CLGSASDLLEVH-KKPL---QEVEIAAVTHGALQGLAYLHSHN----------------MIHRDVKAGNILLSEPGLVKL  156 (309)
T ss_dssp             CSEEHHHHHHHH-TSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCSGGGEEEETTTEEEE
T ss_pred             cCCCchHHHHHh-CCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EeccCCCcceEEECCCCCEEE
Confidence            9999 4433222 2334   44556677789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc----ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK----LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~----~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||+|+.....  ....||+.|++||+..    ..| ..+|+|+   ++|++++ +..||.+.+.......+.......
T Consensus       157 ~DFG~a~~~~~~--~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~-g~~Pf~~~~~~~~~~~i~~~~~~~  233 (309)
T d1u5ra_         157 GDFGSASIMAPA--NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPLFNMNAMSALYHIAQNESPA  233 (309)
T ss_dssp             CCCTTCBSSSSB--CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSCCCC
T ss_pred             eecccccccCCC--CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhCCCCC
Confidence            999999876543  3467999999999842    223 4667777   6666655 556776654322222222222222


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ......+....+.+..++..||..|++..
T Consensus       234 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  262 (309)
T d1u5ra_         234 LQSGHWSEYFRNFVDSCLQKIPQDRPTSE  262 (309)
T ss_dssp             CSCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHCcCChhHCcCHH
Confidence            22222222445667777788898888754

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-39  Score=289.77  Aligned_cols=187  Identities=16%  Similarity=0.082  Sum_probs=150.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec----CCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE----PNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~----~~~~~iv   87 (334)
                      +|+...||+|.++.+++.||+|.+..........+.+.+|+++|++++||||        |++|+++.+    ++.+|||
T Consensus        19 ~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnI--------v~~~~~~~~~~~~~~~~~iv   90 (270)
T d1t4ha_          19 RGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI--------VRFYDSWESTVKGKKCIVLV   90 (270)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTB--------CCEEEEEEEESSSCEEEEEE
T ss_pred             cCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCe--------eeEEEEEeeccccCCEEEEE
Confidence            6788899999999999999999998776655556788999999999999999        999999864    4568999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC-CCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD-EHG  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~-~~~  165 (334)
                      ||||+|| +..+.... ..+   ....+..++.||+.||+|||+++              ++|+||||||+|||++ +++
T Consensus        91 mE~~~~g~L~~~l~~~-~~~---~~~~~~~~~~qi~~gl~yLH~~~--------------~~IiHrDiKp~NILl~~~~~  152 (270)
T d1t4ha_          91 TELMTSGTLKTYLKRF-KVM---KIKVLRSWCRQILKGLQFLHTRT--------------PPIIHRDLKCDNIFITGPTG  152 (270)
T ss_dssp             EECCCSCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHTSS--------------SCCCCSCCCGGGEEESSTTS
T ss_pred             EeCCCCCcHHHHHhcc-ccc---cHHHHHHHHHHHHHHHHHHHHCC--------------CCEEeCCcChhhceeeCCCC
Confidence            9999998 54333322 233   44555677789999999999987              4499999999999996 478


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccccccCCc-ceeeh---hHHHHHcCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIKKLGGPF-VSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~~~~~~-~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      .+||+|||+|+..........+||+.|++||+....++. +|+|+   ++|++++ +..||.+.
T Consensus       153 ~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~-g~~Pf~~~  215 (270)
T d1t4ha_         153 SVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMAT-SEYPYSEC  215 (270)
T ss_dssp             CEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHH-SSCTTTTC
T ss_pred             CEEEeecCcceeccCCccCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHH-CCCCCCCc
Confidence            999999999998777767778899999999997655554 55555   5666655 56677543

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-39  Score=293.04  Aligned_cols=195  Identities=17%  Similarity=0.158  Sum_probs=140.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--CCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--PNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--~~~~~ivmE   89 (334)
                      +|+.+.||+|.++.||+.||||++..........+.+.+|+++|++++||||        |++++++.+  ++.+|||||
T Consensus        14 ~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnI--------v~~~~~~~~~~~~~~~ivmE   85 (269)
T d2java1          14 TGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI--------VRYYDRIIDRTNTTLYIVME   85 (269)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTB--------CCEEEEEEC----CEEEEEE
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCE--------eeEEEEEEeCCCCEEEEEEe
Confidence            5788899999999999999999999877666566788999999999999999        999999864  567999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||+|| +..+............+..++.++.||+.||.|||+++.           ...+|+||||||+|||+++++.+|
T Consensus        86 y~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~-----------~~~~IiHrDiKp~NIll~~~~~vk  154 (269)
T d2java1          86 YCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSD-----------GGHTVLHRDLKPANVFLDGKQNVK  154 (269)
T ss_dssp             CCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC--------------------CCGGGEEECTTSCEE
T ss_pred             cCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcC-----------CCCCEEeCcCchhhcCcCCCCcEE
Confidence            99998 544433322222223566677888899999999998641           112399999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+|+.+....  .....||+.|++||+.. ..|+ .+|+|+   ++|++++ +..||.+.+
T Consensus       155 l~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~t-g~~Pf~~~~  218 (269)
T d2java1         155 LGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCA-LMPPFTAFS  218 (269)
T ss_dssp             ECCHHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             EeeccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhh-CCCCCCCCC
Confidence            99999999876543  34567899999999853 3344 566666   6666655 566776543

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-39  Score=291.02  Aligned_cols=229  Identities=13%  Similarity=0.061  Sum_probs=164.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||+++.....  ..+.+.+|+++|+.++||||        |++++++.+++.+|||||||
T Consensus        22 ~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~--~~~~~~~E~~il~~l~HpnI--------v~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          22 DGAFGKVYKAQNKETSVLAAAKVIDTKSEE--ELEDYMVEIDILASCDHPNI--------VKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEECSSSG--GGGGTHHHHHHHHHCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             eCCCcEEEEEEECCCCeEEEEEEECcCCHH--HHHHHHHHHHHHHhCCCCCC--------CeEEEEEeeCCeEEEEEecC
Confidence            577889999999999999999999865432  34567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|| +..+.......+   .+..+..++.||+.||.|||+++                |+||||||+|||++.++.+||+
T Consensus        92 ~~g~L~~~~~~~~~~l---~e~~~~~i~~qi~~gL~ylH~~~----------------ivHrDiKp~NIll~~~~~~Kl~  152 (288)
T d2jfla1          92 AGGAVDAVMLELERPL---TESQIQVVCKQTLDALNYLHDNK----------------IIHRDLKAGNILFTLDGDIKLA  152 (288)
T ss_dssp             TTEEHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTSCEEEC
T ss_pred             CCCcHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------EEEeecChhheeECCCCCEEEE
Confidence            998 544433332334   44455667779999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCccccccccc------cccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIK------KLGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~------~~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      |||+|+......  ..+..||+.|++||+.      ...| ..+|+|+   ++|++++ +.+||.+.+.......+....
T Consensus       153 DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemlt-g~~Pf~~~~~~~~~~~i~~~~  231 (288)
T d2jfla1         153 DFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAE-IEPPHHELNPMRVLLKIAKSE  231 (288)
T ss_dssp             CCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHH-SSCTTTTSCGGGHHHHHHHSC
T ss_pred             echhhhccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHHcCC
Confidence            999998654432  3456789999999984      2223 4567777   5566655 567887765332222222222


Q ss_pred             cccccc-ccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         239 IEEVSQ-DLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       239 ~~~~~~-~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ...... ...+....+.+..++..||..|++..
T Consensus       232 ~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~  264 (288)
T d2jfla1         232 PPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTS  264 (288)
T ss_dssp             CCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCCccccCCHHHHHHHHHHccCChhHCcCHH
Confidence            111110 11111233455555566666666543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-39  Score=298.51  Aligned_cols=186  Identities=13%  Similarity=0.192  Sum_probs=149.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||+++.... ......+.+|+++|+.++||||        |+++++|.+++.+|||||||
T Consensus        16 ~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~Ei~il~~l~HpnI--------v~l~~~~~~~~~~~iVmEy~   86 (322)
T d1s9ja_          16 AGNGGVVFKVSHKPSGLVMARKLIHLEIK-PAIRNQIIRELQVLHECNSPYI--------VGFYGAFYSDGEISICMEHM   86 (322)
T ss_dssp             CCSSCCEEEEEETTTTEEEEEEEEECCCC-TTHHHHHHHHGGGGGGCCCTTB--------CCEEEEEECSSEEEEEEECC
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEEChhhC-HHHHHHHHHHHHHHHhCCCCCC--------CcEEEEEEECCEEEEEEEcC
Confidence            68889999999999999999999986543 3345678899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSA-LNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +|| +..+.... ..+   .+..+..++.|++.||.|||++ +                |+||||||+|||++++|.+||
T Consensus        87 ~gg~L~~~l~~~-~~l---~~~~~~~~~~qil~aL~yLH~~~~----------------IiHRDiKP~NILl~~~~~vkl  146 (322)
T d1s9ja_          87 DGGSLDQVLKKA-GRI---PEQILGKVSIAVIKGLTYLREKHK----------------IMHRDVKPSNILVNSRGEIKL  146 (322)
T ss_dssp             TTEEHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHHHC----------------CCCSCCSGGGEEECTTCCEEE
T ss_pred             CCCcHHHHHhhc-CCC---CHHHHHHHHHHHHHHHHHHHHhCC----------------EEccccCHHHeeECCCCCEEE
Confidence            998 54443322 234   4455566777999999999974 8                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      +|||+|+........+.+||+.|++||+.. .. ++.+|+|+   ++|++++ +..||.+.+.
T Consensus       147 ~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~-G~~Pf~~~~~  208 (322)
T d1s9ja_         147 CDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAV-GRYPIPPPDA  208 (322)
T ss_dssp             CCCCCCHHHHHHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHH-SSCCSSCCCT
T ss_pred             eeCCCccccCCCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCCCH
Confidence            999999987766667788999999999853 33 44566666   5556655 6778877653

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-39  Score=293.91  Aligned_cols=228  Identities=17%  Similarity=0.157  Sum_probs=165.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.++||+|.++.+|+.||||++++... +....+.+.+|+++|++++||||        |++++++.+++.+||||||
T Consensus        18 ~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI--------v~l~~~~~~~~~~~ivmEy   89 (288)
T d1uu3a_          18 EGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFF--------VKLYFTFQDDEKLYFGLSY   89 (288)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCe--------eEEEEEEEECCEEEEEEEc
Confidence            57888999999999999999999986443 22234568899999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+|| +..+.... +.+   .+..+..++.|++.||.|||+++                |+||||||+|||+++++.+||
T Consensus        90 ~~gg~L~~~~~~~-~~l---~e~~~~~~~~qi~~al~ylH~~~----------------iiHrDiKp~NIll~~~~~vkl  149 (288)
T d1uu3a_          90 AKNGELLKYIRKI-GSF---DETCTRFYTAEIVSALEYLHGKG----------------IIHRDLKPENILLNEDMHIQI  149 (288)
T ss_dssp             CTTEEHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECTTSCEEE
T ss_pred             cCCCCHHHhhhcc-CCC---CHHHHHHHHHHHHHHHHhhcccc----------------EEcCcCCccccccCCCceEEe
Confidence            9998 43332222 234   44555667779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC----CCccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccc
Q psy6542         170 SDLGLACDFSKKK----PHASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIE  240 (334)
Q Consensus       170 ~DFGla~~~~~~~----~~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  240 (334)
                      +|||+|+.+....    ..+.+||+.|++||+. ...|+ .+|+||   ++|++++ +.+||.+.+.......+....+ 
T Consensus       150 ~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~-g~~Pf~~~~~~~~~~~i~~~~~-  227 (288)
T d1uu3a_         150 TDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA-GLPPFRAGNEYLIFQKIIKLEY-  227 (288)
T ss_dssp             CCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHTTCC-
T ss_pred             cccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhh-CCCCCCCcCHHHHHHHHHcCCC-
Confidence            9999999775432    3446799999999985 33455 455555   5566654 6778877653322332333222 


Q ss_pred             ccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         241 EVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       241 ~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .++...+ ....+.+..++..||..|++..
T Consensus       228 ~~p~~~s-~~~~~li~~~L~~dP~~R~t~~  256 (288)
T d1uu3a_         228 DFPEKFF-PKARDLVEKLLVLDATKRLGCE  256 (288)
T ss_dssp             CCCTTCC-HHHHHHHHTTSCSSGGGSTTSG
T ss_pred             CCCccCC-HHHHHHHHHHccCCHhHCcCHH
Confidence            2332222 1344556666667777777654

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-39  Score=296.93  Aligned_cols=228  Identities=16%  Similarity=0.143  Sum_probs=174.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.++||+|.++.||+.||||++++... .....+.+.+|+.+|+.++||||        |++++++.+++.+|+||||
T Consensus        15 ~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~I--------v~l~~~~~~~~~~~iv~ey   86 (337)
T d1o6la_          15 KGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFL--------TALKYAFQTHDRLCFVMEY   86 (337)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             cCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCE--------EEEEeeeccccccccceec
Confidence            57889999999999999999999986543 22234567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |+|| +..+... ...+++   ..+..++.||+.||.|||+++                |+||||||+|||++.+|.+||
T Consensus        87 ~~gg~L~~~~~~-~~~~~e---~~~~~~~~qil~al~ylH~~~----------------iiHRDlKP~NILl~~~g~vkl  146 (337)
T d1o6la_          87 ANGGELFFHLSR-ERVFTE---ERARFYGAEIVSALEYLHSRD----------------VVYRDIKLENLMLDKDGHIKI  146 (337)
T ss_dssp             CTTCBHHHHHHH-HSCCCH---HHHHHHHHHHHHHHHHHHHTT----------------CBCCCCCGGGEEECTTSCEEE
T ss_pred             cCCCchhhhhhc-ccCCcH---HHHHHHHHHHhhhhhhhhhcC----------------ccccccCHHHeEecCCCCEEE
Confidence            9999 4333222 234433   444556679999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC--CCccccCccccccccc-cccCCcceeeh----hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         170 SDLGLACDFSKKK--PHASVESDCILHGYIK-KLGGPFVSAWQ----TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       170 ~DFGla~~~~~~~--~~~~~~t~~~~~~~v~-~~~~~~~~~w~----~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      +|||+|+......  ....+||+.|++||+. ..+|+.+.|||    ++|++++ +.+||.+.+.....+.+....+ ..
T Consensus       147 ~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~-G~~pf~~~~~~~~~~~i~~~~~-~~  224 (337)
T d1o6la_         147 TDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHERLFELILMEEI-RF  224 (337)
T ss_dssp             CCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCC-CC
T ss_pred             eecccccccccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHH-CCCCCCCcCHHHHHHHHhcCCC-CC
Confidence            9999999764432  3557899999999995 44455555555    6666666 6778888765444444444433 23


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +..++ ....+.+..++..||..|+++.
T Consensus       225 p~~~s-~~~~dli~~~L~~dP~~R~~~~  251 (337)
T d1o6la_         225 PRTLS-PEAKSLLAGLLKKDPKQRLGGG  251 (337)
T ss_dssp             CTTSC-HHHHHHHHHHTCSSTTTSTTCS
T ss_pred             CccCC-HHHHHHHHhhccCCchhhcccc
Confidence            43333 2456677777888999998753

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-38  Score=290.70  Aligned_cols=227  Identities=16%  Similarity=0.147  Sum_probs=170.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.||+|+++.+|+.||||++++... +....+.+.+|+.+|+.++||||        |++++++.+++.+|+||||
T Consensus        14 ~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI--------v~~~~~~~~~~~~~ivmE~   85 (316)
T d1fota_          14 TGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFI--------IRMWGTFQDAQQIFMIMDY   85 (316)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTB--------CCEEEEEECSSEEEEEECC
T ss_pred             cCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcCh--------hheeeeEeeCCeeeeEeee
Confidence            57888999999999999999999986543 22234578889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      |.|| +..+.... ...   ....+..++.||+.||.|||+++                |+||||||+|||++.+|.+||
T Consensus        86 ~~gg~l~~~~~~~-~~~---~~~~~~~~~~qi~~al~~lH~~~----------------iiHrDiKp~NILl~~~g~vkL  145 (316)
T d1fota_          86 IEGGELFSLLRKS-QRF---PNPVAKFYAAEVCLALEYLHSKD----------------IIYRDLKPENILLDKNGHIKI  145 (316)
T ss_dssp             CCSCBHHHHHHHT-SSC---CHHHHHHHHHHHHHHHHHHHTTT----------------EECCCCCGGGEEECTTSCEEE
T ss_pred             cCCcccccccccc-ccc---cccHHHHHHHHHHHhhhhhccCc----------------EEccccCchheeEcCCCCEEE
Confidence            9998 44433322 233   33344556779999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccccc
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQ  244 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  244 (334)
                      +|||+|+..... ..+.+||+.|++||+.. ..|+ .+|+|+   ++|++++ +..||.+.+.......+..... ..+.
T Consensus       146 ~DFG~a~~~~~~-~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemlt-G~~Pf~~~~~~~~~~~i~~~~~-~~p~  222 (316)
T d1fota_         146 TDFGFAKYVPDV-TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLA-GYTPFYDSNTMKTYEKILNAEL-RFPP  222 (316)
T ss_dssp             CCCSSCEECSSC-BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHHCCC-CCCT
T ss_pred             ecCccceEeccc-cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHh-CCCCCCCcCHHHHHHHHHcCCC-CCCC
Confidence            999999977654 34578999999999853 3355 455555   5666655 6778877654333333333322 2332


Q ss_pred             ccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         245 DLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       245 ~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ... ....+.+...+..||..|+++.
T Consensus       223 ~~s-~~~~~li~~~L~~dp~~R~~~~  247 (316)
T d1fota_         223 FFN-EDVKDLLSRLITRDLSQRLGNL  247 (316)
T ss_dssp             TSC-HHHHHHHHHHTCSCTTTCTTSS
T ss_pred             CCC-HHHHHHHHHHhhhCHHhccccc
Confidence            222 2345667777788999998654

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-38  Score=287.77  Aligned_cols=236  Identities=13%  Similarity=0.044  Sum_probs=172.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||+++....+   .+.+.+|+++|++++||||        |++++++.+++.+|||||||
T Consensus        27 ~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~---~~~~~~E~~il~~l~HpnI--------v~~~~~~~~~~~~~iv~E~~   95 (287)
T d1opja_          27 GGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNL--------VQLLGVCTREPPFYIITEFM   95 (287)
T ss_dssp             TTTTSSEEEEEEGGGTEEEEEEECCTTCSC---HHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCEEEEECC
T ss_pred             eCCCeEEEEEEECCCCeEEEEEEECCccch---HHHHHHHHHHHHhCCCCCE--------ecCCccEeeCCeeEEEeecc
Confidence            588889999999999999999999865543   3467889999999999999        99999999999999999999


Q ss_pred             CCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++| + +.+.......+   .....+.++.||+.||.|||+++                |+||||||+|||+++++.+||
T Consensus        96 ~~g~l~~~l~~~~~~~~---~~~~~~~i~~qi~~gL~yLH~~~----------------iiHrDlKp~NILl~~~~~~Kl  156 (287)
T d1opja_          96 TYGNLLDYLRECNRQEV---SAVVLLYMATQISSAMEYLEKKN----------------FIHRDLAARNCLVGENHLVKV  156 (287)
T ss_dssp             TTCBHHHHHHHSCTTTS---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEECGGGCEEE
T ss_pred             cCcchHHHhhhccccch---HHHHHHHHHHHHHHHHHHHHHCC----------------cccCccccCeEEECCCCcEEE
Confidence            988 3 34433322222   45556677889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCC---ccccCccccccccc-cccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKKPH---ASVESDCILHGYIK-KLGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~~~---~~~~t~~~~~~~v~-~~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||+|+........   ...|++.|++||+. ...| .++|+|+   ++|+++.++.+++.+.+...            
T Consensus       157 ~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~------------  224 (287)
T d1opja_         157 ADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ------------  224 (287)
T ss_dssp             CCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH------------
T ss_pred             ccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHH------------
Confidence            999999977655432   23468889999974 3334 4667777   77788777776654332110            


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                   +...+..+.      ..+..+.+++.+.+  +...|...+|..|+ +.++++.+...
T Consensus       225 -------------~~~~i~~~~------~~~~~~~~~~~l~~--li~~cl~~dP~~Rps~~ei~~~L~~~  273 (287)
T d1opja_         225 -------------VYELLEKDY------RMERPEGCPEKVYE--LMRACWQWNPSDRPSFAEIHQAFETM  273 (287)
T ss_dssp             -------------HHHHHHTTC------CCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred             -------------HHHHHhcCC------CCCCCccchHHHHH--HHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence                         001111100      00112234444445  67777778888888 77777766553

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.4e-38  Score=288.28  Aligned_cols=228  Identities=18%  Similarity=0.135  Sum_probs=150.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||++.+...+. ..+.+.+|+++|+.++||||        |++++++.+++.+|||||||
T Consensus        19 ~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~-~~~~~~~Ei~il~~l~HpnI--------v~l~~~~~~~~~~~lvmE~~   89 (307)
T d1a06a_          19 TGAFSEVILAEDKRTQKLVAIKCIAKKALEG-KEGSMENEIAVLHKIKHPNI--------VALDDIYESGGHLYLIMQLV   89 (307)
T ss_dssp             SGGGGGEEEEEETTTCCEEEEEEEEC-----------CHHHHHHHTCCCTTB--------CCEEEEEECSSEEEEEECCC
T ss_pred             eccCeEEEEEEECCCCCEEEEEEEchHHhhh-HHHHHHHHHHHHHhCCCCCC--------CcEEEEEEECCEEEEEEecc
Confidence            5788899999999999999999998765533 23567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC---CCCCE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD---EHGHV  167 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~---~~~~v  167 (334)
                      +|| +..+.... ..+   .+..+..++.||+.||.|||+++                |+||||||+|||+.   +++.+
T Consensus        90 ~gg~L~~~l~~~-~~l---~e~~~~~~~~qi~~al~ylH~~~----------------iiHrDiKp~Nil~~~~~~~~~v  149 (307)
T d1a06a_          90 SGGELFDRIVEK-GFY---TERDASRLIFQVLDAVKYLHDLG----------------IVHRDLKPENLLYYSLDEDSKI  149 (307)
T ss_dssp             CSCBHHHHHHTC-SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEESSSSTTCCE
T ss_pred             CCCcHHHhhhcc-cCC---CHHHHHHHHHHHHHHHHhhhhce----------------eeeEEecccceeecccCCCceE
Confidence            987 53332322 234   44555667779999999999999                99999999999995   47889


Q ss_pred             EEEecccccccCCCC-CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         168 RISDLGLACDFSKKK-PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       168 kl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      ||+|||+|+...... ..+.+||+.|++||+.. ..| ..+|+|+   ++|+++ ++.+||.+.+.......+...... 
T Consensus       150 kl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell-~g~~Pf~~~~~~~~~~~i~~~~~~-  227 (307)
T d1a06a_         150 MISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILL-CGYPPFYDENDAKLFEQILKAEYE-  227 (307)
T ss_dssp             EECCC------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHH-HSSCSCCCSSHHHHHHHHHTTCCC-
T ss_pred             EEeccceeEEccCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHH-hCCCCCCCCCHHHHHHHHhccCCC-
Confidence            999999998776554 34567999999999853 334 4566666   556655 567788776543333333332221 


Q ss_pred             ccccc---ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDL---ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~---~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+...   .+....+.+..++..||..|++..
T Consensus       228 ~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~  259 (307)
T d1a06a_         228 FDSPYWDDISDSAKDFIRHLMEKDPEKRFTCE  259 (307)
T ss_dssp             CCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CCCccccCCCHHHHHHHHHHccCCHhHCcCHH
Confidence            11111   111344566666777888887654

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-37  Score=290.42  Aligned_cols=229  Identities=24%  Similarity=0.229  Sum_probs=169.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc----chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH----ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~----~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +|+.+.||+|.++.||+.||||++.+...    ..........|+++++.++||||        |++++++.+++.+|||
T Consensus        14 ~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnI--------v~l~~~~~~~~~~~iv   85 (364)
T d1omwa3          14 RGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFI--------VCMSYAFHTPDKLSFI   85 (364)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTB--------CCEEEEEECSSEEEEE
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcE--------EEEEEEEEECCEEEEE
Confidence            57889999999999999999999975433    11112223345777888899999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||+|| +..++... ..+   .+..+..++.||+.||.|||+++                |+||||||+|||++.+|.
T Consensus        86 mE~~~gg~L~~~l~~~-~~~---~e~~~~~~~~qi~~aL~ylH~~~----------------iiHrDlKP~NILl~~~g~  145 (364)
T d1omwa3          86 LDLMNGGDLHYHLSQH-GVF---SEADMRFYAAEIILGLEHMHNRF----------------VVYRDLKPANILLDEHGH  145 (364)
T ss_dssp             ECCCCSCBHHHHHHHH-CSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECSSSC
T ss_pred             EEecCCCcHHHHHHhc-ccc---cHHHHHHHHHHHHHHHHHHHHCC----------------ccceeeccceeEEcCCCc
Confidence            9999988 54433322 233   34455667789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCCCccccCcccccccccc--ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcc--c
Q psy6542         167 VRISDLGLACDFSKKKPHASVESDCILHGYIKK--LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMD--Q  238 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~--~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~--~  238 (334)
                      +||+|||+|+.+........+||+.|++||+..  ..|+ .+|+|+   ++|++++ +..||.+.+......+....  .
T Consensus       146 iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemlt-G~~Pf~~~~~~~~~~~~~~~~~~  224 (364)
T d1omwa3         146 VRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLR-GHSPFRQHKTKDKHEIDRMTLTM  224 (364)
T ss_dssp             EEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHH-SSCSSCSSCSSCHHHHHHHSSSC
T ss_pred             EEEeeeceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhcccC
Confidence            999999999988888778889999999999853  3455 455566   5566655 66788776543332222111  1


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ....+..++ ....+.+..++..||..|+++.
T Consensus       225 ~~~~~~~~s-~~~~~li~~~L~~dP~~R~t~~  255 (364)
T d1omwa3         225 AVELPDSFS-PELRSLLEGLLQRDVNRRLGCL  255 (364)
T ss_dssp             CCCCCSSSC-HHHHHHHHHHTCSSTTTSTTTS
T ss_pred             CCCCCCCCC-HHHHHHHHHHcccCHHHhCCCc
Confidence            112222222 2456778888889999999863

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-37  Score=283.64  Aligned_cols=237  Identities=13%  Similarity=0.053  Sum_probs=162.2

Q ss_pred             CCCceEEEeceeCCCCC---cEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGF---PIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~---~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +|+.+.||+|.++.+|+   .||||.+.....+ ...+.+.+|+++|++++||||        |++++++.+++.+|+||
T Consensus        36 ~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~HpnI--------v~l~g~~~~~~~~~iv~  106 (299)
T d1jpaa_          36 AGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTE-KQRRDFLSEASIMGQFDHPNV--------IHLEGVVTKSTPVMIIT  106 (299)
T ss_dssp             ECSSSEEEEEEECC---CCEEEEEEECCSSCCH-HHHHHHHHHHHHHTTCCCTTB--------CCEEEEECSSSSCEEEE
T ss_pred             eCCCeEEEEEEEeCCCCEEEEEEEEEECcccCH-HHHHHHHHHHHHHHhCCCCCC--------ccEEEEEeeCCEEEEEE
Confidence            57888999999988776   4888888755443 344578899999999999999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      |||+|| ++.+.......+   .....+.++.||+.||.|||+++                |+||||||+|||+++++.+
T Consensus       107 Ey~~~g~L~~~~~~~~~~l---~~~~~~~i~~qia~gl~yLH~~~----------------iiHrDlKp~NILl~~~~~~  167 (299)
T d1jpaa_         107 EFMENGSLDSFLRQNDGQF---TVIQLVGMLRGIAAGMKYLADMN----------------YVHRDLAARNILVNSNLVC  167 (299)
T ss_dssp             ECCTTEEHHHHHHTTTTCS---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTCCE
T ss_pred             EecCCCcceeeeccccCCC---CHHHHHHHHHHHHHHHHHHhhCC----------------CccCccccceEEECCCCcE
Confidence            999999 655444333333   44556677889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCCC-------CccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchh
Q psy6542         168 RISDLGLACDFSKKKP-------HASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIF  235 (334)
Q Consensus       168 kl~DFGla~~~~~~~~-------~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~  235 (334)
                      ||+|||+|+.+.....       ....||+.|++||+.. . .+..+|+|+   ++||+++.+.+||.+.+..   +   
T Consensus       168 Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~---~---  241 (299)
T d1jpaa_         168 KVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQ---D---  241 (299)
T ss_dssp             EECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---H---
T ss_pred             EECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHH---H---
Confidence            9999999987654432       1234688899999843 2 344677777   7788877778887554311   0   


Q ss_pred             cccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         236 MDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                         +...+..+.      ..+....++..+.+  +..+|...+|..|| +.++++.|.+
T Consensus       242 -------------------~~~~i~~~~------~~~~~~~~~~~l~~--li~~cl~~~P~~RPs~~ei~~~L~~  289 (299)
T d1jpaa_         242 -------------------VINAIEQDY------RLPPPMDCPSALHQ--LMLDCWQKDRNHRPKFGQIVNTLDK  289 (299)
T ss_dssp             -------------------HHHHHHTTC------CCCCCTTCCHHHHH--HHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred             -------------------HHHHHHcCC------CCCCCccchHHHHH--HHHHHcCCCHhHCcCHHHHHHHHHH
Confidence                               011111100      01112334455555  77778888888888 7778777655

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-37  Score=280.11  Aligned_cols=186  Identities=18%  Similarity=0.132  Sum_probs=148.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc----chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH----ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~----~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +|+.+.||+|.++.+|+.||||++++...    .....+.+.+|+++|++++||||        |++++++.+++.+|||
T Consensus        20 ~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnI--------v~~~~~~~~~~~~~iv   91 (293)
T d1jksa_          20 SGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNV--------ITLHEVYENKTDVILI   91 (293)
T ss_dssp             ECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTB--------CCEEEEEECSSEEEEE
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCC--------CcEEEEEEECCEEEEE
Confidence            57889999999999999999999987654    22234578899999999999999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-  165 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-  165 (334)
                      ||||+|| +..+.... ..+   ....+..++.|++.||.|||+++                |+||||||+|||++.++ 
T Consensus        92 ~E~~~gg~L~~~i~~~-~~l---~~~~~~~~~~qi~~al~yLH~~~----------------ivHrDiKp~Nill~~~~~  151 (293)
T d1jksa_          92 LELVAGGELFDFLAEK-ESL---TEEEATEFLKQILNGVYYLHSLQ----------------IAHFDLKPENIMLLDRNV  151 (293)
T ss_dssp             EECCCSCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEESCSSS
T ss_pred             EEcCCCccccchhccc-ccc---chhHHHHHHHHHHHHHHhhhhcc----------------eeecccccceEEEecCCC
Confidence            9999988 54433322 233   45556677789999999999999                99999999999998876 


Q ss_pred             ---CEEEEecccccccCCCC-CCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 ---HVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ---~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                         .+||+|||+|+...... .....||+.|++||+.. . .+..+|+|+   ++|++++ +..||.+.+
T Consensus       152 ~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~-g~~Pf~~~~  220 (293)
T d1jksa_         152 PKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS-GASPFLGDT  220 (293)
T ss_dssp             SSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             cccceEecchhhhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHc-CCCCCCCCC
Confidence               49999999999876554 34567899999999853 2 345666666   5666655 566876654

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=2.2e-37  Score=287.75  Aligned_cols=229  Identities=14%  Similarity=0.106  Sum_probs=169.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||++......  ..+.+.+|+++|+.++||||        |++++++.+++.+|||||||
T Consensus        36 ~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~--~~~~~~~E~~il~~l~HpnI--------v~~~~~~~~~~~~~ivmE~~  105 (350)
T d1koaa2          36 TGAFGVVHRVTERATGNNFAAKFVMTPHES--DKETVRKEIQTMSVLRHPTL--------VNLHDAFEDDNEMVMIYEFM  105 (350)
T ss_dssp             EETTEEEEEEEETTTTEEEEEEEECCCSHH--HHHHHHHHHHHHHHTCCTTB--------CCEEEEEEETTEEEEEECCC
T ss_pred             cCcCeEEEEEEECCCCCEEEEEEEcccchh--hHHHHHHHHHHHHhCCCCCC--------CcEEEEEEECCEEEEEEEcC
Confidence            578889999999999999999999865432  34578899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC--CCCEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE--HGHVR  168 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~--~~~vk  168 (334)
                      +|| +..........+   .+..+..++.||+.||.|||+++                |+||||||+|||++.  ++.+|
T Consensus       106 ~gg~L~~~l~~~~~~l---~e~~~~~i~~qi~~aL~ylH~~~----------------iiHrDiKp~NIll~~~~~~~vk  166 (350)
T d1koaa2         106 SGGELFEKVADEHNKM---SEDEAVEYMRQVCKGLCHMHENN----------------YVHLDLKPENIMFTTKRSNELK  166 (350)
T ss_dssp             CSCBHHHHHTCTTSCB---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEESSTTSCCEE
T ss_pred             CCCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHHHHHHhcC----------------CeeeeechhHeeeccCCCCeEE
Confidence            988 433333222234   45556677789999999999999                999999999999964  57899


Q ss_pred             EEecccccccCCCCC-CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         169 ISDLGLACDFSKKKP-HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       169 l~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |+|||+|+.+..... .+..||+.|++||+.. ..|+ .+|+|+   ++|++++ +.+||.+.+.......+........
T Consensus       167 L~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~-G~~Pf~~~~~~~~~~~i~~~~~~~~  245 (350)
T d1koaa2         167 LIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLS-GLSPFGGENDDETLRNVKSCDWNMD  245 (350)
T ss_dssp             ECCCTTCEECCTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTCCCSC
T ss_pred             EeecchheecccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCC
Confidence            999999998766554 4567899999999853 3344 566666   5566655 6778877654333333322222111


Q ss_pred             cc--ccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQ--DLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~--~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ..  ...+....+.+..++..||..|++..
T Consensus       246 ~~~~~~~s~~~~~li~~~L~~dP~~R~t~~  275 (350)
T d1koaa2         246 DSAFSGISEDGKDFIRKLLLADPNTRMTIH  275 (350)
T ss_dssp             CGGGGGCCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             cccccCCCHHHHHHHHHHccCChhHCcCHH
Confidence            10  11111345667777788999998754

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=3.2e-37  Score=286.87  Aligned_cols=228  Identities=16%  Similarity=0.107  Sum_probs=169.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||+++.....  ..+.+.+|+++|++++||||        |+++++|.+++.+|||||||
T Consensus        39 ~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~--~~~~~~~Ei~il~~l~HpnI--------v~~~~~~~~~~~~~ivmE~~  108 (352)
T d1koba_          39 SGAFGVVHRCVEKATGRVFVAKFINTPYPL--DKYTVKNEISIMNQLHHPKL--------INLHDAFEDKYEMVLILEFL  108 (352)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEECCSHH--HHHHHHHHHHHHTTCCSTTB--------CCEEEEEECSSEEEEEEECC
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEECCcchh--HHHHHHHHHHHHHhCCCCCC--------CcEEEEEEECCEEEEEEEcC
Confidence            477889999999999999999999865432  24567889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC--CCCCEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD--EHGHVR  168 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~--~~~~vk  168 (334)
                      +|| +..........+   .+..++.++.||+.||.|||+++                |+||||||+|||++  .++.+|
T Consensus       109 ~gg~L~~~~~~~~~~l---~e~~~~~i~~qi~~aL~ylH~~~----------------iiHRDiKp~NILl~~~~~~~vk  169 (352)
T d1koba_         109 SGGELFDRIAAEDYKM---SEAEVINYMRQACEGLKHMHEHS----------------IVHLDIKPENIMCETKKASSVK  169 (352)
T ss_dssp             CCCBHHHHTTCTTCCB---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEESSTTCCCEE
T ss_pred             CCChHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------eeecccccccccccccCCCeEE
Confidence            998 432222222234   45556677789999999999999                99999999999997  568999


Q ss_pred             EEecccccccCCCCC-CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         169 ISDLGLACDFSKKKP-HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       169 l~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |+|||+|+.+..... ....||+.|++||+.. ..++ .+|+|+   ++|+++ ++.+||.+.+.......+...... .
T Consensus       170 L~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell-tG~~Pf~~~~~~~~~~~i~~~~~~-~  247 (352)
T d1koba_         170 IIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLL-SGLSPFAGEDDLETLQNVKRCDWE-F  247 (352)
T ss_dssp             ECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHH-HSCCSSCCSSHHHHHHHHHHCCCC-C
T ss_pred             EeecccceecCCCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHhCCCC-C
Confidence            999999998876653 4567899999999853 3344 566666   555554 567788776543333333322221 1


Q ss_pred             cccc---ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQDL---ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~~---~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +...   .+....+.+..++..||..|++..
T Consensus       248 ~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~  278 (352)
T d1koba_         248 DEDAFSSVSPEAKDFIKNLLQKEPRKRLTVH  278 (352)
T ss_dssp             CSSTTTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CcccccCCCHHHHHHHHHHccCChhHCcCHH
Confidence            1111   112345667777788999998754

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-38  Score=286.22  Aligned_cols=187  Identities=16%  Similarity=0.111  Sum_probs=145.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc---chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH---ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~---~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +|+.+.||+|.++.+|+.||||+++....   .....+.+.+|+++|+.++||||        |++++++.+++.+||||
T Consensus         8 ~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnI--------v~~~~~~~~~~~~~ivm   79 (299)
T d1ua2a_           8 EGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNI--------IGLLDAFGHKSNISLVF   79 (299)
T ss_dssp             EETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTB--------CCEEEEECCTTCCEEEE
T ss_pred             cCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCE--------eEEEeeeccCCceeehh
Confidence            47888999999999999999999986543   22345678899999999999999        99999999999999999


Q ss_pred             EccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          89 VRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        89 Ey~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      |||.|++..........++   +..+..++.||+.||.|||+++                |+||||||+|||+++++.+|
T Consensus        80 E~~~~~~~~~~~~~~~~l~---~~~~~~~~~qil~aL~~lH~~~----------------iiHrDiKp~NIli~~~~~~K  140 (299)
T d1ua2a_          80 DFMETDLEVIIKDNSLVLT---PSHIKAYMLMTLQGLEYLHQHW----------------ILHRDLKPNNLLLDENGVLK  140 (299)
T ss_dssp             ECCSEEHHHHHTTCCSSCC---SSHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTTCCEE
T ss_pred             hhhcchHHhhhhhcccCCC---HHHHHHHHHHHHHHHHHhhccc----------------eecccCCcceEEecCCCccc
Confidence            9999994333333323343   3444566679999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCcccccccccc--ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIKK--LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+|+......  ....+||+.|++||+..  ..|+ .+|+|+   ++|++++ +.+||.+.+
T Consensus       141 L~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~-g~~pf~~~~  205 (299)
T d1ua2a_         141 LADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLL-RVPFLPGDS  205 (299)
T ss_dssp             ECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             cccCccccccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHh-CcCCCCCCC
Confidence            99999998776543  34567899999999853  3344 566777   6666665 567887655

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-37  Score=278.23  Aligned_cols=236  Identities=13%  Similarity=0.051  Sum_probs=170.0

Q ss_pred             CCCceEEEeceeCC--CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKP--LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~--~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +|+.+.||+|.++.  ++..||||+++.... ....+.+.+|+++|++++||||        |++++++.+ +.+|||||
T Consensus        19 ~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~-~~~~~~~~~E~~il~~l~HpnI--------v~l~g~~~~-~~~~lvmE   88 (285)
T d1u59a_          19 CGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE-KADTEEMMREAQIMHQLDNPYI--------VRLIGVCQA-EALMLVME   88 (285)
T ss_dssp             CCTTEEEEEEEEC---CCEEEEEEEECSSCC-HHHHHHHHHHHHHHHHCCCTTB--------CCEEEEEES-SSEEEEEE
T ss_pred             cccCeEEEEEEEecCCCcEEEEEEEEChhcC-HHHHHHHHHHHHHHHhCCCCCE--------eeEeeeecc-CeEEEEEE
Confidence            68889999997764  455799999986554 3345678899999999999999        999999875 46899999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||+|| +..+.......+   +....+.++.|++.||.|||+++                |+||||||+|||++.++.+|
T Consensus        89 ~~~~g~L~~~l~~~~~~l---~~~~~~~i~~qi~~gL~ylH~~~----------------iiHrDlKp~Nill~~~~~~K  149 (285)
T d1u59a_          89 MAGGGPLHKFLVGKREEI---PVSNVAELLHQVSMGMKYLEEKN----------------FVHRDLAARNVLLVNRHYAK  149 (285)
T ss_dssp             CCTTEEHHHHHTTCTTTS---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEEEETTEEE
T ss_pred             eCCCCcHHHHhhccccCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eecCcCchhheeeccCCcee
Confidence            99998 544433322233   44556777889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC-----CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         169 ISDLGLACDFSKKKP-----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       169 l~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      |+|||+|+.+.....     ....||+.|++||+..  ..+.++|+|+   ++||+++.+..||.+.+..   +++    
T Consensus       150 l~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~---~~~----  222 (285)
T d1u59a_         150 ISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP---EVM----  222 (285)
T ss_dssp             ECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH---HHH----
T ss_pred             eccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHH---HHH----
Confidence            999999997755432     2345788999999843  3355677777   7788888788887654321   110    


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                    ..+.    +.  .++    +..+.+++++.+  +..+|...+|..|| ..++++.|..
T Consensus       223 --------------~~i~----~~--~~~----~~p~~~~~~l~~--li~~cl~~~p~~RPs~~~i~~~L~~  268 (285)
T d1u59a_         223 --------------AFIE----QG--KRM----ECPPECPPELYA--LMSDCWIYKWEDRPDFLTVEQRMRA  268 (285)
T ss_dssp             --------------HHHH----TT--CCC----CCCTTCCHHHHH--HHHHTTCSSGGGSCCHHHHHHHHHH
T ss_pred             --------------HHHH----cC--CCC----CCCCcCCHHHHH--HHHHHcCCCHhHCcCHHHHHHHHHH
Confidence                          0111    00  001    112345555556  77777888888888 5666665543

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-37  Score=286.98  Aligned_cols=227  Identities=18%  Similarity=0.150  Sum_probs=168.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.||+|.++.+|+.||||++.+... +....+.+.+|+++|+.++||||        |++++++.+.+.+|+||||
T Consensus        51 ~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnI--------v~~~~~~~~~~~~~~v~e~  122 (350)
T d1rdqe_          51 TGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFL--------VKLEFSFKDNSNLYMVMEY  122 (350)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSEEEEEEEC
T ss_pred             cCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcE--------eeccccccccccccccccc
Confidence            57888999999999999999999986443 22234567889999999999999        9999999999999999999


Q ss_pred             cCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          91 QSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        91 ~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      +.|| +...... ...+   .+..+..++.||+.||.|||+++                |+||||||+|||++.+|.+||
T Consensus       123 ~~~g~l~~~l~~-~~~l---~e~~~~~i~~qi~~aL~yLH~~~----------------iiHRDIKP~NILl~~~g~ikL  182 (350)
T d1rdqe_         123 VAGGEMFSHLRR-IGRF---SEPHARFYAAQIVLTFEYLHSLD----------------LIYRDLKPENLLIDQQGYIQV  182 (350)
T ss_dssp             CTTCBHHHHHHH-HCCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTSCEEE
T ss_pred             ccccchhhhHhh-cCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EecCcCCHHHcccCCCCCEEe
Confidence            9998 3333222 2234   44555667789999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCCCccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccccc
Q psy6542         170 SDLGLACDFSKKKPHASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVSQ  244 (334)
Q Consensus       170 ~DFGla~~~~~~~~~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  244 (334)
                      +|||+|+..... ..+..||+.|++||+. ..+|+ .+|+|+   ++|+++ ++.+||.+.+.......+..... ..+.
T Consensus       183 ~DFG~a~~~~~~-~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyeml-tG~~Pf~~~~~~~~~~~i~~~~~-~~p~  259 (350)
T d1rdqe_         183 TDFGFAKRVKGR-TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMA-AGYPPFFADQPIQIYEKIVSGKV-RFPS  259 (350)
T ss_dssp             CCCTTCEECSSC-BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHH-HSSCSSCCSSHHHHHHHHHHCCC-CCCT
T ss_pred             eeceeeeecccc-cccccCccccCCHHHHcCCCCCccccccchhHHHHHHH-hCCCCCCCcCHHHHHHHHhcCCC-CCCc
Confidence            999999977654 4457899999999984 33344 455555   555655 46678877653332333333322 2222


Q ss_pred             ccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         245 DLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       245 ~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      ... ....+.+..++..||..|+...
T Consensus       260 ~~s-~~~~~li~~~L~~dP~kR~~~~  284 (350)
T d1rdqe_         260 HFS-SDLKDLLRNLLQVDLTKRFGNL  284 (350)
T ss_dssp             TCC-HHHHHHHHHHSCSCTTTCTTSS
T ss_pred             cCC-HHHHHHHHHHhhhCHHhccccc
Confidence            222 2445667777788888887543

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=279.09  Aligned_cols=235  Identities=13%  Similarity=0.089  Sum_probs=162.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++. ++.||||+++.....   .+.+.+|+++++.++||||        |++++++.+++.+|+|||||
T Consensus        15 ~G~fg~Vy~~~~~~-~~~vAvK~i~~~~~~---~~~~~~E~~~l~~l~HpnI--------v~~~g~~~~~~~~~lv~E~~   82 (263)
T d1sm2a_          15 SGQFGLVHLGYWLN-KDKVAIKTIREGAMS---EEDFIEEAEVMMKLSHPKL--------VQLYGVCLEQAPICLVFEFM   82 (263)
T ss_dssp             CCSSCCEEEEEETT-TEEEEEEECCSSSSC---HHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCEEEEECC
T ss_pred             eCCCeEEEEEEECC-CCEEEEEEECCCcCc---HHHHHHHHHHHHhcCCCCc--------ccccceeccCCceEEEEEec
Confidence            67888999999874 678999999865543   3467889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      ++| +..+.......+   .....+.++.|++.||.|||+++                |+||||||+|||+++++.+||+
T Consensus        83 ~~g~L~~~l~~~~~~~---~~~~~~~i~~qia~gl~~lH~~~----------------iiHrDlKp~Nill~~~~~~Kl~  143 (263)
T d1sm2a_          83 EHGCLSDYLRTQRGLF---AAETLLGMCLDVCEGMAYLEEAC----------------VIHRDLAARNCLVGENQVIKVS  143 (263)
T ss_dssp             TTCBHHHHHHTTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCTTCSGGGEEECGGGCEEEC
T ss_pred             CCCcHHHHhhccccCC---CHHHHHHHHHHHHHHHHhhhccc----------------eeecccchhheeecCCCCeEec
Confidence            998 544333322223   44555677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC---CccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         171 DLGLACDFSKKKP---HASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       171 DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |||+|+.......   ....||+.|++||+.. . .+.++|+|+   ++|++++.+.+|+...+.   .+++        
T Consensus       144 DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~---~~~~--------  212 (263)
T d1sm2a_         144 DFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN---SEVV--------  212 (263)
T ss_dssp             SCC------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCH---HHHH--------
T ss_pred             ccchheeccCCCceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCH---HHHH--------
Confidence            9999987655432   3356789999999843 2 344667777   778888877776544321   1000        


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                ..+....      +..    .....++.+.+  +...|...+|..|| +.+++++|.+.
T Consensus       213 ----------~~i~~~~------~~~----~p~~~~~~l~~--li~~cl~~~p~~Rps~~~il~~L~~i  259 (263)
T d1sm2a_         213 ----------EDISTGF------RLY----KPRLASTHVYQ--IMNHCWKERPEDRPAFSRLLRQLAEI  259 (263)
T ss_dssp             ----------HHHHHTC------CCC----CCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ----------HHHHhcC------CCC----CccccCHHHHH--HHHHHccCCHhHCcCHHHHHHHHHHH
Confidence                      0111100      000    11223344444  66777788888888 88888887753

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-38  Score=287.97  Aligned_cols=187  Identities=20%  Similarity=0.181  Sum_probs=148.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||+++.........+.+.+|+++|++++||||        |++++++.+++.+|+||||+
T Consensus        12 ~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~I--------v~~~~~~~~~~~~~iv~e~~   83 (298)
T d1gz8a_          12 EGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI--------VKLLDVIHTENKLYLVFEFL   83 (298)
T ss_dssp             ECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTB--------CCEEEEEEETTEEEEEEECC
T ss_pred             cCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcE--------EEeccccccccceeEEEeec
Confidence            4788899999999999999999998665544455678899999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ ++.+.......+   .+..+..++.||+.||.|||+++                |+||||||+|||++.++.+||+
T Consensus        84 ~~~~~~~~~~~~~~~l---~e~~~~~~~~qil~~L~yLH~~~----------------IiHrDiKpeNIl~~~~~~~kl~  144 (298)
T d1gz8a_          84 HQDLKKFMDASALTGI---PLPLIKSYLFQLLQGLAFCHSHR----------------VLHRDLKPQNLLINTEGAIKLA  144 (298)
T ss_dssp             SEEHHHHHHHTTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTSCEEEC
T ss_pred             CCchhhhhhhhcccCC---CHHHHHHHHHHHHHHHHHhhcCC----------------EEccccCchheeecccCcceec
Confidence            998 444433333334   44556677779999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC--CCccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         171 DLGLACDFSKKK--PHASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       171 DFGla~~~~~~~--~~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+|+......  .....||+.|++||+..  . .+..+|+|+   ++|++++ +.+||.+.+
T Consensus       145 DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~-G~~Pf~~~~  207 (298)
T d1gz8a_         145 DFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVT-RRALFPGDS  207 (298)
T ss_dssp             STTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             cCCcceeccCCcccceeecccceeeehhhhccccCCCccccccccchhhhHHhh-CCCCCCCCC
Confidence            999998775543  34457899999999732  2 245677787   5566655 677887654

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=279.39  Aligned_cols=239  Identities=14%  Similarity=0.049  Sum_probs=165.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|..+.   .||||+++....+....+.+.+|+++|++++||||        |++++++.+ +.+|||||||
T Consensus        18 ~G~fg~Vy~~~~~~---~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnI--------v~~~~~~~~-~~~~lv~Ey~   85 (276)
T d1uwha_          18 SGSFGTVYKGKWHG---DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI--------LLFMGYSTA-PQLAIVTQWC   85 (276)
T ss_dssp             ECSSCEEEEEESSS---EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTB--------CCEEEEECS-SSCEEEEECC
T ss_pred             eCCCcEEEEEEECC---EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCE--------eeeeEEEec-cEEEEEEecC
Confidence            57888999997543   59999998776655566788999999999999999        999998754 5689999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      +|| +..+.......+   ....++.++.||+.||.|||+++                |+||||||+|||++.++.+||+
T Consensus        86 ~~g~L~~~l~~~~~~~---~~~~~~~i~~qi~~gl~yLH~~~----------------ivHrDlKp~NiLl~~~~~~Kl~  146 (276)
T d1uwha_          86 EGSSLYHHLHIIETKF---EMIKLIDIARQTAQGMDYLHAKS----------------IIHRDLKSNNIFLHEDLTVKIG  146 (276)
T ss_dssp             CEEEHHHHHHTSCCCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEEETTSSEEEC
T ss_pred             CCCCHHHHHhhccCCC---CHHHHHHHHHHHHHHHHHHhcCC----------------EeccccCHHHEEEcCCCCEEEc
Confidence            988 544333222233   45556778889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCC----CCccccCccccccccccc----cC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccc
Q psy6542         171 DLGLACDFSKKK----PHASVESDCILHGYIKKL----GG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQ  238 (334)
Q Consensus       171 DFGla~~~~~~~----~~~~~~t~~~~~~~v~~~----~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  238 (334)
                      |||+|+......    .....||+.||+||+...    .| ..+|+|+   ++|++++ +..||.+.+..   ..+    
T Consensus       147 DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~t-g~~Pf~~~~~~---~~~----  218 (276)
T d1uwha_         147 DFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNR---DQI----  218 (276)
T ss_dssp             CCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHH-SSCTTTTCCCH---HHH----
T ss_pred             cccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHH-CCCCCCCCChH---HHH----
Confidence            999998765432    234578999999998531    23 3567777   7777776 55677554311   000    


Q ss_pred             ccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         239 IEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                   ...+... ...|...     .....+++.+..  +...|.+.+|..|| +.+++++++..
T Consensus       219 -------------~~~~~~~-~~~p~~~-----~~~~~~~~~l~~--li~~cl~~dp~~RPt~~~il~~Le~l  270 (276)
T d1uwha_         219 -------------IFMVGRG-YLSPDLS-----KVRSNCPKAMKR--LMAECLKKKRDERPLFPQILASIELL  270 (276)
T ss_dssp             -------------HHHHHHT-SCCCCGG-----GSCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -------------HHHHhcC-CCCCcch-----hccccchHHHHH--HHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence                         0001110 0111000     012234455555  77778888888888 77887777653

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-37  Score=278.31  Aligned_cols=186  Identities=11%  Similarity=0.068  Sum_probs=144.0

Q ss_pred             CCCceEEEeceeC--CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLK--PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~--~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +|+.+.||+|..+  .+++.||||+++....+....+.+.+|+++|++++||||        |++++++.++ ..|||||
T Consensus        17 ~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnI--------v~~~g~~~~~-~~~lvmE   87 (277)
T d1xbba_          17 SGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI--------VRMIGICEAE-SWMLVME   87 (277)
T ss_dssp             ECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTB--------CCEEEEEESS-SEEEEEE
T ss_pred             cCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCC--------ceEEEEeccC-CEEEEEE
Confidence            5888999999754  566889999998766555566789999999999999999        9999999654 5789999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||+|| +..+.... ..+   ....++.++.||+.||.|||+++                |+||||||+|||++.++.+|
T Consensus        88 ~~~~g~L~~~l~~~-~~l---~~~~~~~i~~qi~~gl~ylH~~~----------------iiHrDlKp~Nill~~~~~~k  147 (277)
T d1xbba_          88 MAELGPLNKYLQQN-RHV---KDKNIIELVHQVSMGMKYLEESN----------------FVHRDLAARNVLLVTQHYAK  147 (277)
T ss_dssp             CCTTEEHHHHHHHC-TTC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEEETTEEE
T ss_pred             cCCCCcHHHHHhhc-cCC---CHHHHHHHHHHHHHHHhhHHhCC----------------cccCCCcchhhcccccCccc
Confidence            99998 54443322 223   45566788889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCC-----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKKP-----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+|+.+.....     ....||+.|++||+.. .. +..+|+|+   ++|++++.+.+||.+.+
T Consensus       148 l~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~  215 (277)
T d1xbba_         148 ISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  215 (277)
T ss_dssp             ECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             ccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCC
Confidence            999999997655432     2345788999999843 22 45677777   77888877888876543

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.4e-36  Score=273.60  Aligned_cols=186  Identities=18%  Similarity=0.194  Sum_probs=148.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc-------hHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE-------SRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~-------~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      +|+.+.||+|+++.+|+.||||++++....       ....+.+.+|+.++++++ ||||        |++++++.+++.
T Consensus        13 ~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnI--------v~~~~~~~~~~~   84 (277)
T d1phka_          13 RGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNI--------IQLKDTYETNTF   84 (277)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTB--------CCEEEEEECSSE
T ss_pred             cCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCe--------EEEEeecccCcc
Confidence            578899999999999999999999876541       223446888999999997 9999        999999999999


Q ss_pred             EEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeC
Q psy6542          84 HYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLD  162 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~  162 (334)
                      +|||||||+|| +..++... ..+   .+..+..++.||+.||.|||+++                |+||||||+|||++
T Consensus        85 ~~ivmE~~~~g~L~~~l~~~-~~l---~e~~~~~~~~qi~~al~~lH~~~----------------ivHrDlkp~Nill~  144 (277)
T d1phka_          85 FFLVFDLMKKGELFDYLTEK-VTL---SEKETRKIMRALLEVICALHKLN----------------IVHRDLKPENILLD  144 (277)
T ss_dssp             EEEEEECCTTCBHHHHHHHH-SSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEC
T ss_pred             eEEEEEcCCCchHHHHHHhc-CCC---CHHHHHHHHHHHHHHHHHHHHcC----------------CcccccccceEEEc
Confidence            99999999987 44433322 233   45556677789999999999999                99999999999999


Q ss_pred             CCCCEEEEecccccccCCCC-CCccccCcccccccccc-------cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         163 EHGHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-------LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       163 ~~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-------~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .++.+||+|||+|+...... .....||+.|++||+..       .. +..+|+|+   ++|++++ +..||.+.+
T Consensus       145 ~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~-g~~Pf~~~~  219 (277)
T d1phka_         145 DDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLA-GSPPFWHRK  219 (277)
T ss_dssp             TTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSS
T ss_pred             CCCCeEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhcc-CCCCCCCCC
Confidence            99999999999999876554 34467899999999732       12 33456666   5666655 677887654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-36  Score=272.63  Aligned_cols=233  Identities=14%  Similarity=0.079  Sum_probs=168.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++ +++.||||+++.....   .+.+.+|++++++++||||        |++++++.+ +.+|+|||||
T Consensus        23 ~G~fg~Vy~~~~~-~~~~vAvK~~~~~~~~---~~~~~~E~~~l~~l~HpnI--------v~~~g~~~~-~~~~iv~Ey~   89 (272)
T d1qpca_          23 AGQFGEVWMGYYN-GHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRL--------VRLYAVVTQ-EPIYIITEYM   89 (272)
T ss_dssp             EETTEEEEEEEET-TTEEEEEEEECTTSSC---HHHHHHHHHHHHHCCCTTB--------CCEEEEECS-SSCEEEEECC
T ss_pred             cCCCcEEEEEEEC-CCCEEEEEEEccCcCC---HHHHHHHHHHHHhCCCCCE--------eEEEeeecc-CCeEEEEEeC
Confidence            5788899999976 5789999999865543   3467889999999999999        999998754 5679999999


Q ss_pred             CCC-hhH-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KDQ-ISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~~-l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++| +.. +.......+   .....+.++.||+.||.|||+++                |+||||||+|||+++++.+||
T Consensus        90 ~~g~L~~~~~~~~~~~l---~~~~~~~i~~qi~~gl~~lH~~~----------------ivHrDiKp~NIll~~~~~~Kl  150 (272)
T d1qpca_          90 ENGSLVDFLKTPSGIKL---TINKLLDMAAQIAEGMAFIEERN----------------YIHRDLRAANILVSDTLSCKI  150 (272)
T ss_dssp             TTCBHHHHTTSHHHHTC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEECTTSCEEE
T ss_pred             CCCcHHHHHhhcCCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------cccCccchhheeeecccceee
Confidence            998 433 322222222   55566788889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCC---CCccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKK---PHASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||+|+......   .....||+.|++||+..  ..+.++|+|+   ++|++++++.+|+...+.   .+         
T Consensus       151 ~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~---~~---------  218 (272)
T d1qpca_         151 ADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN---PE---------  218 (272)
T ss_dssp             CCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH---HH---------
T ss_pred             ccccceEEccCCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCH---HH---------
Confidence            9999999776543   23456788999999853  3345677777   778888877776544321   10         


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                   +...+...      ...+....+++.+..  +...|.+.+|..|| +.++++.|..
T Consensus       219 -------------~~~~i~~~------~~~~~p~~~~~~l~~--li~~cl~~~P~~Rpt~~ei~~~L~~  266 (272)
T d1qpca_         219 -------------VIQNLERG------YRMVRPDNCPEELYQ--LMRLCWKERPEDRPTFDYLRSVLED  266 (272)
T ss_dssp             -------------HHHHHHTT------CCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             -------------HHHHHHhc------CCCCCcccChHHHHH--HHHHHcCCCHhHCcCHHHHHHHhhh
Confidence                         00111000      000111234444455  77788888888888 7777776654

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.5e-36  Score=271.87  Aligned_cols=240  Identities=15%  Similarity=0.146  Sum_probs=167.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC----eEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN----SHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~----~~~i   86 (334)
                      +|+...||+|.++.+|+.||||++++... +....+.+.+|+++++.++||||        |++++++...+    .+||
T Consensus        17 ~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpni--------v~~~~~~~~~~~~~~~~~l   88 (277)
T d1o6ya_          17 FGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAI--------VAVYDTGEAETPAGPLPYI   88 (277)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTB--------CCEEEEEEEECSSSEEEEE
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCC--------CcccceeeeccCCCceEEE
Confidence            57888999999999999999999987655 44556688999999999999999        99999988543    4899


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      |||||+|+ +....... ..+   .+..+..++.||+.||.|||+++                |+||||||+|||++.++
T Consensus        89 vmE~~~g~~L~~~~~~~-~~l---~~~~~~~i~~qi~~al~~lH~~~----------------iiHrDiKP~NIll~~~~  148 (277)
T d1o6ya_          89 VMEYVDGVTLRDIVHTE-GPM---TPKRAIEVIADACQALNFSHQNG----------------IIHRDVKPANIMISATN  148 (277)
T ss_dssp             EEECCCEEEHHHHHHHH-CSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEEETTS
T ss_pred             EEECCCCCEehhhhccc-CCC---CHHHHHHHHHHHHHHHHHHHhCC----------------ccCccccCcccccCccc
Confidence            99999998 44332222 233   45556677889999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCC-----CCccccCccccccccccc-cC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchh
Q psy6542         166 HVRISDLGLACDFSKKK-----PHASVESDCILHGYIKKL-GG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIF  235 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~~~-~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~  235 (334)
                      .++++|||++.......     ....+||+.|++||+... .+ +.+|+|+   ++|++++ +.+||.+.+..   +.  
T Consensus       149 ~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyellt-G~~Pf~~~~~~---~~--  222 (277)
T d1o6ya_         149 AVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLT-GEPPFTGDSPV---SV--  222 (277)
T ss_dssp             CEEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCSCCCSSHH---HH--
T ss_pred             cceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHh-CCCCCCCcCHH---HH--
Confidence            99999999997654332     344578999999998543 34 4666677   5566655 56687654311   10  


Q ss_pred             cccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch--hHHHHHHHHHH
Q psy6542         236 MDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC--SQELLGSMARK  310 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~--~~~lL~~l~~~  310 (334)
                                         +...+..++..    +....+.+++.+.+  +..+++..+|..|+  +.++++.+.+.
T Consensus       223 -------------------~~~~~~~~~~~----~~~~~~~~s~~l~~--li~~~L~~dp~~R~~sa~~l~~~l~r~  274 (277)
T d1o6ya_         223 -------------------AYQHVREDPIP----PSARHEGLSADLDA--VVLKALAKNPENRYQTAAEMRADLVRV  274 (277)
T ss_dssp             -------------------HHHHHHCCCCC----GGGTSSSCCHHHHH--HHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             -------------------HHHHHhcCCCC----CchhccCCCHHHHH--HHHHHccCCHhHCHhHHHHHHHHHHHH
Confidence                               01111111110    00122344455555  77788888888887  77888877764

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=278.09  Aligned_cols=227  Identities=14%  Similarity=0.085  Sum_probs=166.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||+++....+   ...+.+|+++|+.++||||        |++++++.+++.+|||||||
T Consensus        15 ~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~---~~~~~~Ei~il~~l~HpnI--------v~~~~~~~~~~~~~lvmE~~   83 (321)
T d1tkia_          15 RGEFGIVHRCVETSSKKTYMAKFVKVKGTD---QVLVKKEISILNIARHRNI--------LHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECCCTHH---HHHHHHHHHHHHHSCCTTB--------CCEEEEEEETTEEEEEECCC
T ss_pred             cCCCeEEEEEEECCCCcEEEEEEEcCCccc---HHHHHHHHHHHHhCCCCCC--------CeEEEEEEECCEEEEEEecC
Confidence            688899999999999999999999865442   3457789999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC--CCEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH--GHVR  168 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~--~~vk  168 (334)
                      +|+ +...+......+   .+..+..++.||+.||.|||+++                |+||||||+|||++.+  +.+|
T Consensus        84 ~gg~L~~~i~~~~~~l---~e~~~~~i~~qi~~al~yLH~~~----------------iiHrDlKp~NIll~~~~~~~ik  144 (321)
T d1tkia_          84 SGLDIFERINTSAFEL---NEREIVSYVHQVCEALQFLHSHN----------------IGHFDIRPENIIYQTRRSSTIK  144 (321)
T ss_dssp             CCCBHHHHHTSSSCCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEESSSSCCCEE
T ss_pred             CCCcHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHHHcC----------------CCcccccccceeecCCCceEEE
Confidence            987 433333222233   45556677789999999999999                9999999999999854  4799


Q ss_pred             EEecccccccCCCC-CCccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         169 ISDLGLACDFSKKK-PHASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       169 l~DFGla~~~~~~~-~~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |+|||+++...... .....+|+.|++|++. ...|+ .+|+|+   ++|++++ +.+||.+.+.......+...... .
T Consensus       145 l~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~-G~~Pf~~~~~~~~~~~i~~~~~~-~  222 (321)
T d1tkia_         145 IIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLS-GINPFLAETNQQIIENIMNAEYT-F  222 (321)
T ss_dssp             ECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHHTCCC-C
T ss_pred             EcccchhhccccCCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCC-C
Confidence            99999999776554 3456788999999984 33344 556666   5555555 67788776643333333333221 1


Q ss_pred             cccc---ccHhHHHHHHHhhccCchhhcCCC
Q psy6542         243 SQDL---ITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       243 ~~~~---~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      +...   .+....+.+..++..||..|++..
T Consensus       223 ~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~  253 (321)
T d1tkia_         223 DEEAFKEISIEAMDFVDRLLVKERKSRMTAS  253 (321)
T ss_dssp             CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             ChhhccCCCHHHHHHHHHHccCChhHCcCHH
Confidence            1111   111334566666778898888754

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-36  Score=272.94  Aligned_cols=238  Identities=13%  Similarity=0.048  Sum_probs=164.1

Q ss_pred             CCCceEEEeceeCCCC----CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLG----FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~----~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +|+.+.||+|..+.++    ..||||.++....+. ..+.+.+|++++++++||||        |++++++.+.+.+++|
T Consensus        17 ~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~-~~~~~~~E~~il~~l~H~nI--------v~~~g~~~~~~~~~~v   87 (283)
T d1mqba_          17 AGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEK-QRVDFLGEAGIMGQFSHHNI--------IRLEGVISKYKPMMII   87 (283)
T ss_dssp             ECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHH-HHHHHHHHHHHHHTCCCTTB--------CCEEEEECSSSSEEEE
T ss_pred             eCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChH-HHHHHHHHHHHHHhcCCCCE--------eeeeEEEecCCceEEE
Confidence            5788899999988765    469999997655433 34568899999999999999        9999999999999999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||.++ +..+.......+   .....+.++.|++.||.|||+++                |+||||||+|||++.++.
T Consensus        88 ~e~~~~~~l~~~~~~~~~~~---~~~~~~~i~~~i~~gl~~lH~~~----------------iiHrDlKp~NILl~~~~~  148 (283)
T d1mqba_          88 TEYMENGALDKFLREKDGEF---SVLQLVGMLRGIAAGMKYLANMN----------------YVHRDLAARNILVNSNLV  148 (283)
T ss_dssp             EECCTTEEHHHHHHHTTTCS---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTCC
T ss_pred             EEecccCcchhhhhcccccc---cHHHHHHHHHHHHHhhhhccccc----------------cccCccccceEEECCCCe
Confidence            9999998 433333332233   44556678889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC-----CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         167 VRISDLGLACDFSKKKP-----HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                      +||+|||+|+.......     ....||+.|++||+..  ..+.++|+|+   ++|++++++.+++...+..   ++   
T Consensus       149 ~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~---~~---  222 (283)
T d1mqba_         149 CKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH---EV---  222 (283)
T ss_dssp             EEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---HH---
T ss_pred             EEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHH---HH---
Confidence            99999999987654321     2245688999999743  3344677777   7788877777665433210   00   


Q ss_pred             ccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         237 DQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                     ...+....      ++    +....++..+.+  +..+|...+|..|| +.++++.|.+.
T Consensus       223 ---------------~~~i~~~~------~~----~~~~~~~~~l~~--li~~cl~~~p~~RPt~~eil~~L~~l  270 (283)
T d1mqba_         223 ---------------MKAINDGF------RL----PTPMDCPSAIYQ--LMMQCWQQERARRPKFADIVSILDKL  270 (283)
T ss_dssp             ---------------HHHHHTTC------CC----CCCTTCBHHHHH--HHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             ---------------HHHHhccC------CC----CCchhhHHHHHH--HHHHHCcCCHhHCcCHHHHHHHHHHH
Confidence                           01111100      01    112233444555  77888888888888 77777766553

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-36  Score=276.90  Aligned_cols=242  Identities=12%  Similarity=0.006  Sum_probs=172.5

Q ss_pred             CCCceEEEeceeCCCCC-----cEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGF-----PIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~-----~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +|+.+.||+|.++.+++     .||||.+...... .....+.+|+.+|+++ +||||        |++++++.+.+.+|
T Consensus        47 ~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~~HpnI--------v~l~~~~~~~~~~~  117 (325)
T d1rjba_          47 SGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADS-SEREALMSELKMMTQLGSHENI--------VNLLGACTLSGPIY  117 (325)
T ss_dssp             ECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCE
T ss_pred             eCCCeEEEEEEEcCCCcccceeEEEEEEeccccCH-HHHHHHHHHHHHHHHhcCCCcE--------eEEEEEEeeCCeEE
Confidence            58899999999887665     5999998765442 2345678899999998 89999        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhhh-------------------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINR-------------------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLS  145 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~-------------------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~  145 (334)
                      ||||||+|| +..++......                   ........++.++.|++.||.|||+++             
T Consensus       118 lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~-------------  184 (325)
T d1rjba_         118 LIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS-------------  184 (325)
T ss_dssp             EEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT-------------
T ss_pred             EEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC-------------
Confidence            999999998 44433332111                   112345667788889999999999999             


Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCccccccccc-cccCC-cceeeh---hHHHHHc
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLF  216 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~  216 (334)
                         |+||||||+|||++.++.+||+|||+|+.......    .+..||+.||+||+. ...++ .+|+|+   ++|++++
T Consensus       185 ---IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt  261 (325)
T d1rjba_         185 ---CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFS  261 (325)
T ss_dssp             ---EEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTT
T ss_pred             ---eeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHh
Confidence               99999999999999999999999999987655443    234568999999974 33444 566666   7777777


Q ss_pred             CCCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccc
Q psy6542         217 PNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSA  296 (334)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  296 (334)
                      .+.+||.+.+......                        ..+....  ++    +....+++.+.+  ++.+|.+.+|.
T Consensus       262 ~g~~Pf~~~~~~~~~~------------------------~~~~~~~--~~----~~p~~~~~~l~~--li~~cl~~dP~  309 (325)
T d1rjba_         262 LGVNPYPGIPVDANFY------------------------KLIQNGF--KM----DQPFYATEEIYI--IMQSCWAFDSR  309 (325)
T ss_dssp             TSCCSSTTCCCSHHHH------------------------HHHHTTC--CC----CCCTTCCHHHHH--HHHHHTCSSGG
T ss_pred             CCCCCCCCCCHHHHHH------------------------HHHhcCC--CC----CCCCcCCHHHHH--HHHHHcCCChh
Confidence            7788886654221100                        0000000  01    112233444455  88888889999


Q ss_pred             cch-hHHHHHHHHHH
Q psy6542         297 HKC-SQELLGSMARK  310 (334)
Q Consensus       297 ~r~-~~~lL~~l~~~  310 (334)
                      .|| +.+++++|...
T Consensus       310 ~RPt~~ei~~~L~~~  324 (325)
T d1rjba_         310 KRPSFPNLTSFLGCQ  324 (325)
T ss_dssp             GSCCHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHhCC
Confidence            999 89999988653

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-36  Score=277.05  Aligned_cols=228  Identities=15%  Similarity=0.120  Sum_probs=168.1

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc-chHHhhhHHHHHHHHH-hcCCCCcccccccceeeEEEEeecCCeEEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH-ESRVAKWRPYIQEIFN-HLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGV   89 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~-~~~~~~~~~~E~~il~-~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmE   89 (334)
                      +|+.+.||+|.++.+|+.||||++++... .....+.+..|..++. .++||||        |++++++.+++.+|||||
T Consensus        12 ~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~I--------v~~~~~~~~~~~~yivmE   83 (320)
T d1xjda_          12 KGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFL--------THMFCTFQTKENLFFVME   83 (320)
T ss_dssp             ECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTB--------CCEEEEEECSSEEEEEEE
T ss_pred             cCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcE--------EEEEEEEccCCceeEEEe
Confidence            57888999999999999999999986432 1112234555666654 7999999        999999999999999999


Q ss_pred             ccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          90 RQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        90 y~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      ||+|| +..+... ...+   .+..+..++.||+.||.|||+++                |+||||||+|||+++++.+|
T Consensus        84 y~~~g~L~~~i~~-~~~~---~e~~~~~~~~qi~~al~ylH~~~----------------iiHrDikp~NiL~~~~~~~k  143 (320)
T d1xjda_          84 YLNGGDLMYHIQS-CHKF---DLSRATFYAAEIILGLQFLHSKG----------------IVYRDLKLDNILLDKDGHIK  143 (320)
T ss_dssp             CCTTCBHHHHHHH-HSSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CBCCCCCGGGEEECTTSCEE
T ss_pred             ecCCCcHHHHhhc-cCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------eeeccCcccceeecCCCcee
Confidence            99998 4444332 2234   34455677789999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCC--CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         169 ISDLGLACDFSKKK--PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       169 l~DFGla~~~~~~~--~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      |+|||+|+......  .....||+.|++||+.. ..|+ .+|+|+   ++|++++ +.+||.+.+.......+....+ .
T Consensus       144 l~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemlt-G~~PF~~~~~~~~~~~i~~~~~-~  221 (320)
T d1xjda_         144 IADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLI-GQSPFHGQDEEELFHSIRMDNP-F  221 (320)
T ss_dssp             ECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCC-C
T ss_pred             ccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHh-CCCCCCCCCHHHHHHHHHcCCC-C
Confidence            99999998665433  34467899999999853 3344 555565   5566655 6779987764443333433332 2


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .+... +....+.+..++..||..|++..
T Consensus       222 ~p~~~-s~~~~dli~~~L~~dP~~R~s~~  249 (320)
T d1xjda_         222 YPRWL-EKEAKDLLVKLFVREPEKRLGVR  249 (320)
T ss_dssp             CCTTS-CHHHHHHHHHHSCSSGGGSBTTB
T ss_pred             CCccC-CHHHHHHHHHhcccCCCCCcCHH
Confidence            33222 22455667777888999999864

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-36  Score=278.44  Aligned_cols=225  Identities=12%  Similarity=0.045  Sum_probs=159.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHh-cCCCCcccccccceeeEEEEeec----CCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNH-LRNEPFKKCVLLFKMNLYKVTSE----PNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~-l~h~~i~~~~~~~~v~~~~~~~~----~~~~~i   86 (334)
                      +|+.+.||+|.++.||+.||||+++.       ...+.+|++++.+ ++||||        |+++++|.+    ++.+||
T Consensus        22 ~G~fg~Vy~a~~~~~~~~vAiK~i~~-------~~~~~~E~~~~~~~~~hpnI--------v~l~~~~~~~~~~~~~~~i   86 (335)
T d2ozaa1          22 LGINGKVLQIFNKRTQEKFALKMLQD-------CPKARREVELHWRASQCPHI--------VRIVDVYENLYAGRKCLLI   86 (335)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEC-------SHHHHHHHHHHHHHTTSTTB--------CCEEEEEEEEETTEEEEEE
T ss_pred             eccCeEEEEEEECCCCCEEEEEEECC-------cHHHHHHHHHHHHhcCCCCC--------CeEEEEEeecccCCCEEEE
Confidence            68899999999999999999999973       2345679998755 589999        999999875    467999


Q ss_pred             EEEccCCC-hh-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-
Q psy6542          87 IGVRQSGP-KD-QISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-  163 (334)
Q Consensus        87 vmEy~~g~-l~-~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-  163 (334)
                      |||||+|| +. ++.......+   .+..+..++.||+.||.|||+++                |+||||||+|||+++ 
T Consensus        87 vmEy~~gg~L~~~i~~~~~~~l---~e~~~~~i~~qi~~al~ylH~~~----------------iiHRDiKp~NIll~~~  147 (335)
T d2ozaa1          87 VMECLDGGELFSRIQDRGDQAF---TEREASEIMKSIGEAIQYLHSIN----------------IAHRDVKPENLLYTSK  147 (335)
T ss_dssp             EEECCCSEEHHHHHHSCSCCCE---EHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEESCS
T ss_pred             EEECCCCCcHHHHHHhcCCCCc---CHHHHHHHHHHHHHHHHHHHHcC----------------Cccccccccccccccc
Confidence            99999987 43 4433222234   44555667779999999999999                999999999999986 


Q ss_pred             --CCCEEEEecccccccCCCC-CCccccCcccccccccc-ccCC-cceeeh--hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         164 --HGHVRISDLGLACDFSKKK-PHASVESDCILHGYIKK-LGGP-FVSAWQ--TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       164 --~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~-~~~~-~~~~w~--~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                        .+.+||+|||+|+...... ....+||+.|++||+.. ..|+ .+|+|+  ++.+.|.++.+||.+.+.......+..
T Consensus       148 ~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~  227 (335)
T d2ozaa1         148 RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKT  227 (335)
T ss_dssp             STTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------
T ss_pred             cccccccccccceeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHH
Confidence              4679999999998765544 45567999999999853 3354 556666  555555667889987765433222211


Q ss_pred             c---cccccccccc---cHhHHHHHHHhhccCchhhcCCC
Q psy6542         237 D---QIEEVSQDLI---TVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       237 ~---~~~~~~~~~~---~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .   .....+...+   +....+.+..++..||..|++..
T Consensus       228 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~  267 (335)
T d2ozaa1         228 RIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTIT  267 (335)
T ss_dssp             CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             HHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHH
Confidence            1   1111111111   11344567777778999888644

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-36  Score=265.41  Aligned_cols=233  Identities=15%  Similarity=0.110  Sum_probs=172.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++ +++.||||++++....   .+.+.+|++++++++||||        |++++++.+++.+|+||||+
T Consensus        14 ~G~fg~Vy~~~~~-~~~~vAvK~l~~~~~~---~~~~~~Ev~~~~~l~HpnI--------v~~~g~~~~~~~~~iv~Ey~   81 (258)
T d1k2pa_          14 TGQFGVVKYGKWR-GQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLSHEKL--------VQLYGVCTKQRPIFIITEYM   81 (258)
T ss_dssp             EETTEEEEEEEET-TTEEEEEEEEESSSSC---HHHHHHHHHHHHTCCCTTB--------CCEEEEECCSSSEEEEEECC
T ss_pred             cCCCeEEEEEEEC-CCCEEEEEEECcCcCC---HHHHHHHHHHHHhcCCCce--------eeEEEEEeeCCceEEEEEcc
Confidence            5788899999985 6889999999976653   2457889999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      ++| +...........   .....+.++.|++.||.|||+++                |+||||||+|||+++++.+||+
T Consensus        82 ~~g~l~~~~~~~~~~~---~~~~~~~i~~qi~~gl~~LH~~~----------------iiH~dlk~~Nill~~~~~~kl~  142 (258)
T d1k2pa_          82 ANGCLLNYLREMRHRF---QTQQLLEMCKDVCEAMEYLESKQ----------------FLHRDLAARNCLVNDQGVVKVS  142 (258)
T ss_dssp             TTEEHHHHHHSGGGCC---CHHHHHHHHHHHHHHHHHHHHTT----------------BCCSCCSGGGEEECTTCCEEEC
T ss_pred             CCCcHHHhhhccccCC---cHHHHHHHHHHHHHHHHHHhhcC----------------cccccccceeEEEcCCCcEEEC
Confidence            988 444433333333   44556677889999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC---CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhccccccc
Q psy6542         171 DLGLACDFSKKKP---HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEV  242 (334)
Q Consensus       171 DFGla~~~~~~~~---~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (334)
                      |||+|+.......   ....||+.|+|||+.. .. +.++|+|+   ++|++++.+..||.+.+..   ++.        
T Consensus       143 DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~---~~~--------  211 (258)
T d1k2pa_         143 DFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS---ETA--------  211 (258)
T ss_dssp             CCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHH---HHH--------
T ss_pred             cchhheeccCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHH---HHH--------
Confidence            9999986654432   2355789999999843 33 44666677   7788877678787554411   110        


Q ss_pred             ccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHH
Q psy6542         243 SQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMA  308 (334)
Q Consensus       243 ~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~  308 (334)
                                ..+....      ++.    .....++.+.+  +...|.+.+|..|| +.+++++|.
T Consensus       212 ----------~~i~~~~------~~~----~p~~~~~~l~~--li~~cl~~dP~~RPt~~eil~~L~  256 (258)
T d1k2pa_         212 ----------EHIAQGL------RLY----RPHLASEKVYT--IMYSCWHEKADERPTFKILLSNIL  256 (258)
T ss_dssp             ----------HHHHTTC------CCC----CCTTCCHHHHH--HHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred             ----------HHHHhCC------CCC----CcccccHHHHH--HHHHHccCCHhHCcCHHHHHHHhh
Confidence                      0011000      011    11223334444  77788888888888 888888874

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-36  Score=268.05  Aligned_cols=237  Identities=11%  Similarity=0.029  Sum_probs=160.7

Q ss_pred             CCCceEEEeceeCCCC---CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLG---FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~---~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +|+.+.||+|.+..++   ..||||.++.... ....+.+.+|+++|++++||||        |++++++. ++.+|+||
T Consensus        17 ~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~-~~~~~~~~~E~~~l~~l~HpnI--------v~l~~~~~-~~~~~iv~   86 (273)
T d1mp8a_          17 EGQFGDVHQGIYMSPENPALAVAIKTCKNCTS-DSVREKFLQEALTMRQFDHPHI--------VKLIGVIT-ENPVWIIM   86 (273)
T ss_dssp             ECSSSEEEEEEECCC--CCEEEEEEECTTTTS-HHHHHHHHHHHHHHHTCCCTTB--------CCEEEEEC-SSSCEEEE
T ss_pred             eCCCcEEEEEEEecCCceeEEEEEEEeccccC-HHHHHHHHHHHHHHHhCCCCCE--------eeEEEEEe-cCeEEEEE
Confidence            5788899999987554   4688998865443 3345678899999999999999        99999996 56789999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCE
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHV  167 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~v  167 (334)
                      ||++|| +..+.......+   .....+.++.||+.||.|||+++                |+||||||+||++++++.+
T Consensus        87 E~~~~g~l~~~~~~~~~~l---~~~~~~~~~~qi~~gl~ylH~~~----------------iiHrDlKp~NIll~~~~~~  147 (273)
T d1mp8a_          87 ELCTLGELRSFLQVRKYSL---DLASLILYAYQLSTALAYLESKR----------------FVHRDIAARNVLVSSNDCV  147 (273)
T ss_dssp             ECCTTEEHHHHHHHTTTTS---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEEEETTEE
T ss_pred             EeccCCcHHhhhhccCCCC---CHHHHHHHHHHHHHHhhhhcccC----------------eeccccchhheeecCCCcE
Confidence            999998 433333322233   45556777889999999999999                9999999999999999999


Q ss_pred             EEEecccccccCCCC---CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccc
Q psy6542         168 RISDLGLACDFSKKK---PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQI  239 (334)
Q Consensus       168 kl~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  239 (334)
                      ||+|||+|+.+....   .....||+.|++||+.. ..++ .+|+|+   ++|++++.+.+||.+.+.......+...  
T Consensus       148 Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~--  225 (273)
T d1mp8a_         148 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENG--  225 (273)
T ss_dssp             EECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTT--
T ss_pred             EEccchhheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--
Confidence            999999998765433   23445789999999853 3344 566677   7788888888888665421111111000  


Q ss_pred             cccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         240 EEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                                   ...+..+.+++.+.+  +...|...+|..|+ +.+++++|.+.
T Consensus       226 -----------------------------~~~~~~~~~~~~~~~--li~~cl~~dp~~Rps~~ei~~~L~~i  266 (273)
T d1mp8a_         226 -----------------------------ERLPMPPNCPPTLYS--LMTKCWAYDPSRRPRFTELKAQLSTI  266 (273)
T ss_dssp             -----------------------------CCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----------------------------CCCCCCCCCCHHHHH--HHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence                                         001122344555555  67777777888888 77887776653

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-36  Score=270.70  Aligned_cols=184  Identities=15%  Similarity=0.109  Sum_probs=144.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcc----hHHhhhHHHHHHHHHhcC--CCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHE----SRVAKWRPYIQEIFNHLR--NEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~----~~~~~~~~~E~~il~~l~--h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +|+.+.||+|.++.+|+.||||++++....    ....+++.+|+++|++++  ||||        |++++++.+++.+|
T Consensus        14 ~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nI--------v~~~~~~~~~~~~~   85 (273)
T d1xwsa_          14 SGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGV--------IRLLDWFERPDSFV   85 (273)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSB--------CCEEEEEECSSEEE
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCc--------cEEEEEEeeCCeEE
Confidence            478889999999999999999999865431    122345678999999997  8999        99999999999999


Q ss_pred             EEEEccCCC--hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          86 IIGVRQSGP--KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        86 ivmEy~~g~--l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +||||+.|+  +..+... ...+   .+..+..++.||+.||.|||+++                |+||||||+|||++.
T Consensus        86 lv~e~~~~~~~l~~~~~~-~~~l---~e~~~~~~~~qi~~al~~lH~~~----------------iiHrDiKp~NIll~~  145 (273)
T d1xwsa_          86 LILERPEPVQDLFDFITE-RGAL---QEELARSFFWQVLEAVRHCHNCG----------------VLHRDIKDENILIDL  145 (273)
T ss_dssp             EEEECCSSEEEHHHHHHH-HCSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCSGGGEEEET
T ss_pred             EEEEeccCcchHHHHHhc-cCCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CccccCcccceEEec
Confidence            999999875  2222222 2233   44556667789999999999999                999999999999985


Q ss_pred             -CCCEEEEecccccccCCCCCCccccCcccccccccc--ccCCc-ceeeh---hHHHHHcCCCCCCCC
Q psy6542         164 -HGHVRISDLGLACDFSKKKPHASVESDCILHGYIKK--LGGPF-VSAWQ---TRYAKLFPNRLELHP  224 (334)
Q Consensus       164 -~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~--~~~~~-~~~w~---~~~~~l~~~~~~~~~  224 (334)
                       ++.+||+|||+|+........+..||+.|++||+..  ..++. +|+|+   ++|++++ +..||.+
T Consensus       146 ~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~-g~~Pf~~  212 (273)
T d1xwsa_         146 NRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVC-GDIPFEH  212 (273)
T ss_dssp             TTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHH-SSCSCCS
T ss_pred             CCCeEEECccccceecccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhh-CCCCCCC
Confidence             478999999999987777667788999999999853  23444 57777   5566655 5667754

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-35  Score=268.98  Aligned_cols=233  Identities=13%  Similarity=0.031  Sum_probs=161.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+...||+|.++.+ +.||||+++.....   .+.+.+|+.+|++++||||        |++|+++. ++.+|+|||||
T Consensus        27 ~G~fg~Vy~~~~~~~-~~vAiK~l~~~~~~---~~~~~~E~~~l~~l~h~nI--------v~~~g~~~-~~~~~lv~Ey~   93 (285)
T d1fmka3          27 QGCFGEVWMGTWNGT-TRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEKL--------VQLYAVVS-EEPIYIVTEYM   93 (285)
T ss_dssp             ECSSCEEEEEEETTT-EEEEEEECCTTSSC---HHHHHHHHHHHHHCCCTTB--------CCEEEEEC-SSSCEEEECCC
T ss_pred             eCCCeEEEEEEECCC-CEEEEEEECcccCC---HHHHHHHHHHHHhcccCCE--------eEEEEEEe-cCCeEEEEEec
Confidence            567779999999875 56999999865543   3468889999999999999        99999985 45689999999


Q ss_pred             CCC-hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEE
Q psy6542          92 SGP-KDQISRS-KINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRI  169 (334)
Q Consensus        92 ~g~-l~~l~~~-~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl  169 (334)
                      ++| ++.+... ....+   .....+.++.||+.||.|||+++                |+||||||+|||+++++.+||
T Consensus        94 ~~g~l~~~~~~~~~~~l---~~~~~~~i~~~i~~gl~~LH~~~----------------ivH~DlKp~NIll~~~~~~kl  154 (285)
T d1fmka3          94 SKGSLLDFLKGETGKYL---RLPQLVDMAAQIASGMAYVERMN----------------YVHRDLRAANILVGENLVCKV  154 (285)
T ss_dssp             TTCBHHHHHSHHHHTTC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEECGGGCEEE
T ss_pred             CCCchhhhhhhcccccc---hHHHHHHHHHHHHHHHHHHhhhh----------------eecccccceEEEECCCCcEEE
Confidence            998 4433332 22223   44556778889999999999999                999999999999999999999


Q ss_pred             EecccccccCCCCC---CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccc
Q psy6542         170 SDLGLACDFSKKKP---HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEE  241 (334)
Q Consensus       170 ~DFGla~~~~~~~~---~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  241 (334)
                      +|||+|+.......   ....||+.|++||+..  ..+.++|+|+   ++|++++++.+++...+....           
T Consensus       155 ~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~-----------  223 (285)
T d1fmka3         155 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-----------  223 (285)
T ss_dssp             CCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH-----------
T ss_pred             cccchhhhccCCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHH-----------
Confidence            99999987654432   3356789999999852  3345666777   778888877776554331100           


Q ss_pred             cccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         242 VSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                    ...+.++      ...+..+.++.++.+  +...|.+.+|..|+ +.++++.+..
T Consensus       224 --------------~~~i~~~------~~~~~~~~~~~~l~~--li~~cl~~dP~~Rps~~~i~~~L~~  270 (285)
T d1fmka3         224 --------------LDQVERG------YRMPCPPECPESLHD--LMCQCWRKEPEERPTFEYLQAFLED  270 (285)
T ss_dssp             --------------HHHHHTT------CCCCCCTTSCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             --------------HHHHHhc------CCCCCCcccCHHHHH--HHHHHcccCHhHCcCHHHHHHHHhh
Confidence                          1111110      011122334444555  77788888888888 7777665554

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-36  Score=276.75  Aligned_cols=192  Identities=17%  Similarity=0.169  Sum_probs=148.5

Q ss_pred             eeeecCCC----CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEee
Q psy6542           4 LRRRPRES----RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTS   79 (334)
Q Consensus         4 ~~~~~~~~----~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~   79 (334)
                      ++.|++..    +|+.+.||+|.++.+|+.||||++++........+.+.+|+++|+.++||||        |+++++|.
T Consensus        16 ~~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpni--------v~l~~~~~   87 (346)
T d1cm8a_          16 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENV--------IGLLDVFT   87 (346)
T ss_dssp             CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTB--------CCCSEEEC
T ss_pred             cCCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCe--------eEEEEEec
Confidence            34555433    7889999999999999999999998766666667788899999999999999        99999998


Q ss_pred             cCC------eEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeC
Q psy6542          80 EPN------SHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRD  153 (334)
Q Consensus        80 ~~~------~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrD  153 (334)
                      ..+      .+|+|||||++.+..+...  ..+   ....+..++.||+.||.|||+++                |+|||
T Consensus        88 ~~~~~~~~~~~~lv~e~~~~~l~~~~~~--~~l---~~~~~~~~~~qi~~aL~~LH~~~----------------IiHrD  146 (346)
T d1cm8a_          88 PDETLDDFTDFYLVMPFMGTDLGKLMKH--EKL---GEDRIQFLVYQMLKGLRYIHAAG----------------IIHRD  146 (346)
T ss_dssp             SCSSTTTCCCCEEEEECCSEEHHHHHHH--CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCC
T ss_pred             cCccccccceEEEEEecccccHHHHHHh--ccc---cHHHHHHHHHHHHHHHHHHHhCC----------------Ccccc
Confidence            654      5799999996655554432  234   44555667779999999999999                99999


Q ss_pred             CCCCceeeCCCCCEEEEecccccccCCCCCCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         154 LKPANILLDEHGHVRISDLGLACDFSKKKPHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       154 lKp~NiLl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |||+|||++.++.+|++|||+|+...... ....||+.|++||+..  .. ...+|+|+   ++|++ .++.+||.+.+
T Consensus       147 iKp~NIL~~~~~~~kl~Dfg~a~~~~~~~-~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~el-l~g~~pf~~~~  223 (346)
T d1cm8a_         147 LKPGNLAVNEDCELKILDFGLARQADSEM-TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEM-ITGKTLFKGSD  223 (346)
T ss_dssp             CCGGGEEECTTCCEEECCCTTCEECCSSC-CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHH-HHSSCSSCCSS
T ss_pred             cCcchhhcccccccccccccceeccCCcc-ccccccccccCHHHHcCCCCCCccchhhcchHHHHHH-HHCcCCCCCCC
Confidence            99999999999999999999999776553 4467899999999842  33 45666777   55555 55677886654

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=6.9e-36  Score=270.05  Aligned_cols=186  Identities=16%  Similarity=0.154  Sum_probs=146.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+...||+|.++ +|+.||||+++.........+.+.+|+.+|++++||||        |++++++.+++..|++|||+
T Consensus        12 ~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnI--------v~~~~~~~~~~~~~i~~e~~   82 (286)
T d1ob3a_          12 EGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI--------VKLYDVIHTKKRLVLVFEHL   82 (286)
T ss_dssp             EETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTB--------CCEEEEEECSSCEEEEEECC
T ss_pred             cCCCcEEEEEEeC-CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcE--------EeeeeecccCCceeEEEEee
Confidence            5778899999986 78999999998776555556788899999999999999        99999999999999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEEe
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRISD  171 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~D  171 (334)
                      .|++..........+   ....+..++.||+.||+|||+.+                |+||||||+|||++.++.+||+|
T Consensus        83 ~~~~~~~~~~~~~~l---~~~~~~~i~~qi~~~L~~LH~~~----------------IvHrDiKp~NIll~~~~~~kl~D  143 (286)
T d1ob3a_          83 DQDLKKLLDVCEGGL---ESVTAKSFLLQLLNGIAYCHDRR----------------VLHRDLKPQNLLINREGELKIAD  143 (286)
T ss_dssp             SEEHHHHHHTSTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTTSCEEECC
T ss_pred             hhhhHHHHHhhcCCc---chhhhHHHHHHHHHHHHHhccCc----------------EEecCCCCceeeEcCCCCEEecc
Confidence            999443333333344   44555566779999999999999                99999999999999999999999


Q ss_pred             cccccccCCCC--CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         172 LGLACDFSKKK--PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       172 FGla~~~~~~~--~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ||+|.......  .....+++.|++||+..  .. +..+|+|+   ++|++++ +.+||.+.+
T Consensus       144 fG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~-G~~pf~~~~  205 (286)
T d1ob3a_         144 FGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVN-GTPLFPGVS  205 (286)
T ss_dssp             TTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             cccceecccCccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHH-CCCCCCCCC
Confidence            99998765543  33456788999999742  33 45667777   5566655 677887654

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-34  Score=266.06  Aligned_cols=184  Identities=15%  Similarity=0.088  Sum_probs=140.9

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec------CCeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE------PNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~------~~~~~   85 (334)
                      +|+.+.||+|.++.+|+.||||+++....      ...+|+++|++++||||        |+++++|..      ...+|
T Consensus        30 ~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~------~~~~Ei~il~~l~h~ni--------v~~~~~~~~~~~~~~~~~~~   95 (350)
T d1q5ka_          30 NGSFGVVYQAKLCDSGELVAIKKVLQDKR------FKNRELQIMRKLDHCNI--------VRLRYFFYSSGEKKDEVYLN   95 (350)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEECCSS------SCCHHHHHHHHCCCTTB--------CCEEEEEEEC--CCSCCEEE
T ss_pred             eCcCeEEEEEEECCCCCEEEEEEECccch------HHHHHHHHHHhcCCCCC--------CcEEEEEEecCccCCceEEE
Confidence            57888999999999999999999986543      22369999999999999        999999853      23589


Q ss_pred             EEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          86 IIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        86 ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      ||||||++++...............+..+..++.||+.||+|||+++                |+||||||+|||++.++
T Consensus        96 lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~----------------IiHrDiKp~NILl~~~~  159 (350)
T d1q5ka_          96 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG----------------ICHRDIKPQNLLLDPDT  159 (350)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT----------------EECCCCCGGGEEECTTT
T ss_pred             EEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcC----------------CcccCCCcceEEEecCC
Confidence            99999999843332322222222355566677889999999999999                99999999999999875


Q ss_pred             -CEEEEecccccccCCCC-CCccccCccccccccc--cccC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 -HVRISDLGLACDFSKKK-PHASVESDCILHGYIK--KLGG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 -~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~--~~~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                       .+||+|||+|+...... ..+..||+.|++||+.  ...| ..+|+|+   ++|++++ +.+||.+.+
T Consensus       160 ~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~-g~~pf~~~~  227 (350)
T d1q5ka_         160 AVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLL-GQPIFPGDS  227 (350)
T ss_dssp             CCEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-TSCSSCCSS
T ss_pred             CceeEecccchhhccCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhh-CCCCCCCCC
Confidence             89999999998775544 4456788999999873  2334 4566666   5566655 667886654

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-35  Score=261.15  Aligned_cols=237  Identities=14%  Similarity=0.077  Sum_probs=158.5

Q ss_pred             CCCceEEEeceeC-CCC--CcEEEEEeeCCCc-chHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLK-PLG--FPIQIGMLRHRPH-ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~-~~~--~~vAIK~l~~~~~-~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +|+.+.||+|... .++  ..||||++++... +....+.+.+|+++|++++||||        |++|+++.+ ..+++|
T Consensus        18 ~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nI--------v~~~g~~~~-~~~~lv   88 (273)
T d1u46a_          18 DGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL--------IRLYGVVLT-PPMKMV   88 (273)
T ss_dssp             ----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTB--------CCEEEEECS-SSCEEE
T ss_pred             cCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCE--------EEEEEEEee-cchhee
Confidence            5778899999864 333  3689999987654 34455678999999999999999        999999976 467899


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||+++ +..........+   .....+.++.||+.||.|||+++                |+||||||+|||++.++.
T Consensus        89 ~e~~~~~~l~~~~~~~~~~l---~~~~~~~~~~qi~~gl~ylH~~~----------------iiHrDikp~NIll~~~~~  149 (273)
T d1u46a_          89 TELAPLGSLLDRLRKHQGHF---LLGTLSRYAVQVAEGMGYLESKR----------------FIHRDLAARNLLLATRDL  149 (273)
T ss_dssp             EECCTTCBHHHHHHHHGGGS---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEEEETTE
T ss_pred             eeeecCcchhhhhhcccCCC---CHHHHHHHHHHHHHHHHHhhhCC----------------EeeeeecHHHhccccccc
Confidence            9999988 332222222233   45566778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC-----CccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhc
Q psy6542         167 VRISDLGLACDFSKKKP-----HASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFM  236 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~-----~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~  236 (334)
                      +||+|||+++.......     ....|+..|++||+.. ..+ +.+|+|+   ++|++++.+..||.+.+.....     
T Consensus       150 vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~-----  224 (273)
T d1u46a_         150 VKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQIL-----  224 (273)
T ss_dssp             EEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHH-----
T ss_pred             eeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHH-----
Confidence            99999999997755532     2234677899999843 333 4567777   7788887678887654421110     


Q ss_pred             ccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHH
Q psy6542         237 DQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMA  308 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~  308 (334)
                                          ..+.+..     ...+..+.+++.+.+  +..+|...+|..|| +.++++-+.
T Consensus       225 --------------------~~i~~~~-----~~~~~~~~~~~~l~~--li~~cl~~dp~~RPt~~ei~~~L~  270 (273)
T d1u46a_         225 --------------------HKIDKEG-----ERLPRPEDCPQDIYN--VMVQCWAHKPEDRPTFVALRDFLL  270 (273)
T ss_dssp             --------------------HHHHTSC-----CCCCCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             --------------------HHHHhCC-----CCCCCcccccHHHHH--HHHHHcCCChhHCcCHHHHHHHHH
Confidence                                1111100     011122344555555  77888888888888 666665544

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=260.85  Aligned_cols=186  Identities=16%  Similarity=0.114  Sum_probs=148.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+...||+|.++.+|+.||||+++.........+.+.+|+.+|+.++||||        +++++++.+.+.+++||||+
T Consensus        12 ~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~ni--------v~~~~~~~~~~~~~iv~~~~   83 (292)
T d1unla_          12 EGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI--------VRLHDVLHSDKKLTLVFEFC   83 (292)
T ss_dssp             ECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTB--------CCEEEEEECSSEEEEEEECC
T ss_pred             cCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCE--------EeeccccccccceeEEeeec
Confidence            5788899999999999999999998776655567788999999999999999        99999999999999999999


Q ss_pred             CCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEEEE
Q psy6542          92 SGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVRIS  170 (334)
Q Consensus        92 ~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~  170 (334)
                      .|+ +..+. ...+..   ....+..++.|++.||+|||+++                |+||||||+|||++.++.+||+
T Consensus        84 ~~~~l~~~~-~~~~~~---~~~~~~~~~~q~~~aL~~lH~~~----------------IvHrDiKP~NIli~~~~~~kl~  143 (292)
T d1unla_          84 DQDLKKYFD-SCNGDL---DPEIVKSFLFQLLKGLGFCHSRN----------------VLHRDLKPQNLLINRNGELKLA  143 (292)
T ss_dssp             SEEHHHHHH-HTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEECTTCCEEEC
T ss_pred             ccccccccc-cccccc---chhHHHHHHHHHHHHHHHhhcCC----------------EeeecccCcccccccCCceeee
Confidence            998 43332 222333   34455667779999999999999                9999999999999999999999


Q ss_pred             ecccccccCCCCC--CccccCcccccccccc--c-cCCcceeeh---hHHHHHcCCCCCCCCC
Q psy6542         171 DLGLACDFSKKKP--HASVESDCILHGYIKK--L-GGPFVSAWQ---TRYAKLFPNRLELHPE  225 (334)
Q Consensus       171 DFGla~~~~~~~~--~~~~~t~~~~~~~v~~--~-~~~~~~~w~---~~~~~l~~~~~~~~~~  225 (334)
                      |||+|+.......  ....+++.+++|++..  . .+..+|+|+   ++|+++.+..++|.+.
T Consensus       144 DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~  206 (292)
T d1unla_         144 NFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN  206 (292)
T ss_dssp             CCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS
T ss_pred             ecchhhcccCCCccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCC
Confidence            9999997765543  2334578889998743  2 245677788   5666655555444443

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-35  Score=266.83  Aligned_cols=237  Identities=14%  Similarity=0.039  Sum_probs=161.5

Q ss_pred             CCCceEEEeceeCCCCCc----EEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFP----IQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~----vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~iv   87 (334)
                      +|+.+.||+|.+..+|+.    ||||.++.... ....+.+.+|++++++++||||        |++++++.+++ .+++
T Consensus        19 ~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~HpnI--------v~l~g~~~~~~-~~~v   88 (317)
T d1xkka_          19 SGAFGTVYKGLWIPEGEKVKIPVAIKELREATS-PKANKEILDEAYVMASVDNPHV--------CRLLGICLTST-VQLI   88 (317)
T ss_dssp             ECSSEEEEEEEECC----CCEEEEEEEECC-----CTHHHHHHHHHHHHHCCCTTB--------CCEEEEEESSS-EEEE
T ss_pred             cCCCeEEEEEEEcCCCCEEEEEEEEEEeccccC-HHHHHHHHHHHHHHHhCCCCCE--------eeEEEEEecCC-eeEE
Confidence            588899999999988874    77777765433 2245578899999999999999        99999998754 5677


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      |||+.++ +..........+   ....++.++.||+.||.|||+++                |+||||||+|||++.++.
T Consensus        89 ~e~~~~~~l~~~~~~~~~~~---~~~~~~~i~~qi~~gl~yLH~~~----------------iiHrDlKp~NIll~~~~~  149 (317)
T d1xkka_          89 TQLMPFGCLLDYVREHKDNI---GSQYLLNWCVQIAKGMNYLEDRR----------------LVHRDLAARNVLVKTPQH  149 (317)
T ss_dssp             EECCTTCBHHHHHHHTSSSC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEEEETTE
T ss_pred             EEeccCCcccccccccccCC---CHHHHHHHHHHHHHHHHHHHHcC----------------cccCcchhhcceeCCCCC
Confidence            7777666 433323322233   45556778889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC----CccccCccccccccc-cccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcc
Q psy6542         167 VRISDLGLACDFSKKKP----HASVESDCILHGYIK-KLGG-PFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMD  237 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~-~~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~  237 (334)
                      +||+|||+|+.......    ....||+.|++||+. ...+ ..+|+|+   ++|++++.+.+||.+.+.......+   
T Consensus       150 ~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i---  226 (317)
T d1xkka_         150 VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSIL---  226 (317)
T ss_dssp             EEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHH---
T ss_pred             eEeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHH---
Confidence            99999999997655432    234578999999974 3334 4566676   7788888788887654421111111   


Q ss_pred             cccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHH
Q psy6542         238 QIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARK  310 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~  310 (334)
                                        ....      ++    +..+.+++.+..  +..+|...+|..|| +.++++++.+.
T Consensus       227 ------------------~~~~------~~----~~p~~~~~~~~~--li~~cl~~dP~~RPs~~eil~~l~~~  270 (317)
T d1xkka_         227 ------------------EKGE------RL----PQPPICTIDVYM--IMVKCWMIDADSRPKFRELIIEFSKM  270 (317)
T ss_dssp             ------------------HHTC------CC----CCCTTBCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ------------------HcCC------CC----CCCcccCHHHHH--HHHHhCCCChhhCcCHHHHHHHHHHH
Confidence                              1000      01    111233444445  77777788888888 77887776553

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-35  Score=260.66  Aligned_cols=231  Identities=14%  Similarity=0.137  Sum_probs=160.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-CCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-PNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-~~~~~ivmEy   90 (334)
                      +|+.+.||+|..+  |+.||||+++...    ..+.+.+|++++++++||||        |++++++.+ ++.+|+||||
T Consensus        17 ~G~fg~Vy~~~~~--~~~vAvK~i~~~~----~~~~~~~E~~~l~~l~HpnI--------v~~~g~~~~~~~~~~lv~ey   82 (262)
T d1byga_          17 KGEFGDVMLGDYR--GNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNL--------VQLLGVIVEEKGGLYIVTEY   82 (262)
T ss_dssp             ECSSCEEEEEEET--TEEEEEEECCCCC------HHHHHTHHHHTTCCCTTB--------CCEEEEECCC--CCEEEECC
T ss_pred             cCCCeEEEEEEEC--CeEEEEEEECcHH----HHHHHHHHHHHHHhCCCCCE--------eeEEEEEEecCCcEEEEEec
Confidence            5788899999984  7789999997543    33567889999999999999        999998864 5678999999


Q ss_pred             cCCC-h-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCCEE
Q psy6542          91 QSGP-K-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGHVR  168 (334)
Q Consensus        91 ~~g~-l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~vk  168 (334)
                      +++| + +++......   .......+.++.||+.||.|||+.+                |+||||||+|||++.++.+|
T Consensus        83 ~~~g~L~~~l~~~~~~---~l~~~~~~~i~~~i~~al~ylH~~~----------------ivH~dlkp~Nil~~~~~~~k  143 (262)
T d1byga_          83 MAKGSLVDYLRSRGRS---VLGGDCLLKFSLDVCEAMEYLEGNN----------------FVHRDLAARNVLVSEDNVAK  143 (262)
T ss_dssp             CTTEEHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEECTTSCEE
T ss_pred             cCCCCHHHHHHhcCCC---CCCHHHHHHHHHHHHhhccccccCc----------------eeccccchHhheecCCCCEe
Confidence            9998 4 344333222   2355667788889999999999999                99999999999999999999


Q ss_pred             EEecccccccCCCCCCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchhcccccccc
Q psy6542         169 ISDLGLACDFSKKKPHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIFMDQIEEVS  243 (334)
Q Consensus       169 l~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  243 (334)
                      |+|||+++...... ....++..|++||+.. .. ++.+|+|+   ++|++++.+.+||...+.......          
T Consensus       144 l~dfg~s~~~~~~~-~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~----------  212 (262)
T d1byga_         144 VSDFGLTKEASSTQ-DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPR----------  212 (262)
T ss_dssp             ECCCCC-------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHH----------
T ss_pred             ecccccceecCCCC-ccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHH----------
Confidence            99999998765543 3456788999999853 33 44666677   788887777877655432111111          


Q ss_pred             cccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         244 QDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       244 ~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                                     +...  .+.    +..+..++.+.+  +..+|...+|..|| +.++++.|.+
T Consensus       213 ---------------i~~~--~~~----~~~~~~~~~~~~--li~~cl~~dP~~Rps~~~l~~~L~~  256 (262)
T d1byga_         213 ---------------VEKG--YKM----DAPDGCPPAVYE--VMKNCWHLDAAMRPSFLQLREQLEH  256 (262)
T ss_dssp             ---------------HTTT--CCC----CCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             ---------------HHcC--CCC----CCCccCCHHHHH--HHHHHcccCHhHCcCHHHHHHHHHH
Confidence                           1000  001    112334455555  78888888899988 7788777755

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=269.85  Aligned_cols=187  Identities=17%  Similarity=0.129  Sum_probs=142.8

Q ss_pred             CCCceEEEeceeCCC-CCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc---CCCCcccccccceeeEEEEeec-----CC
Q psy6542          12 RVSKWRVKPPSLKPL-GFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL---RNEPFKKCVLLFKMNLYKVTSE-----PN   82 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~-~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l---~h~~i~~~~~~~~v~~~~~~~~-----~~   82 (334)
                      +|+.+.||+|.+..+ ++.||||+++....+......+.+|+++|+.|   +||||        +++++++..     +.
T Consensus        17 ~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnI--------v~~~~~~~~~~~~~~~   88 (305)
T d1blxa_          17 EGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNV--------VRLFDVCTVSRTDRET   88 (305)
T ss_dssp             EETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTB--------CCEEEEEEEEECSSEE
T ss_pred             cccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCc--------ceeeeeecccccccCc
Confidence            578899999999766 66799999987655444445666788887766   79999        999999852     35


Q ss_pred             eEEEEEEccCCCh-hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceee
Q psy6542          83 SHYIIGVRQSGPK-DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILL  161 (334)
Q Consensus        83 ~~~ivmEy~~g~l-~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl  161 (334)
                      .+|++|||++|+. ..........+   +...+..++.|++.||+|||+++                |+||||||+|||+
T Consensus        89 ~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~qi~~aL~yLH~~~----------------ivHrDiKp~NILi  149 (305)
T d1blxa_          89 KLTLVFEHVDQDLTTYLDKVPEPGV---PTETIKDMMFQLLRGLDFLHSHR----------------VVHRDLKPQNILV  149 (305)
T ss_dssp             EEEEEEECCSCBHHHHHHHSCTTCS---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEE
T ss_pred             eEEEEEEeccCCchhhhhhccCCCC---CHHHHHHHHHHHHHHHHHHHhCC----------------EEecCCCccEEEE
Confidence            7899999999993 33333332333   34445567779999999999999                9999999999999


Q ss_pred             CCCCCEEEEecccccccCCCC-CCccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         162 DEHGHVRISDLGLACDFSKKK-PHASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       162 ~~~~~vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ++++.+||+|||+++...... .....||+.|++||+. ...|+ .+|+||   ++|++++ +.+||.+.+
T Consensus       150 ~~~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~-g~~pf~~~~  219 (305)
T d1blxa_         150 TSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR-RKPLFRGSS  219 (305)
T ss_dssp             CTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             cCCCCeeecchhhhhhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHH-CCCCCCCCC
Confidence            999999999999998665443 3557789999999974 44444 566666   5566555 677887665

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.8e-35  Score=265.15  Aligned_cols=240  Identities=11%  Similarity=-0.018  Sum_probs=171.3

Q ss_pred             CCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +|+.+.||+|..+     .+++.||||+++.... ....+.+.+|+++++.++||||        +++++++.+.+.+++
T Consensus        23 ~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~E~~il~~l~h~ni--------v~~~~~~~~~~~~~~   93 (301)
T d1lufa_          23 EGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS-ADMQADFQREAALMAEFDNPNI--------VKLLGVCAVGKPMCL   93 (301)
T ss_dssp             ECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC-HHHHHHHHHHHHHHHTCCCTTB--------CCEEEEECSSSSCEE
T ss_pred             eCCCeEEEEEEECCCccCCCCeEEEEEEEChhcC-hHHHHHHHHHHHHHHhcCCCCc--------ccceeeeccCCceEE
Confidence            5889999999865     4678999999986543 3355678899999999999999        999999999999999


Q ss_pred             EEEccCCC-hhHHhhh-hhh-------------------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCC
Q psy6542          87 IGVRQSGP-KDQISRS-KIN-------------------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLS  145 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~-~~~-------------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~  145 (334)
                      +|||+.+| +..+... ...                   ..........+.++.|++.||.|||+++             
T Consensus        94 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~-------------  160 (301)
T d1lufa_          94 LFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK-------------  160 (301)
T ss_dssp             EEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT-------------
T ss_pred             EEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCC-------------
Confidence            99999988 4333221 110                   0011244556778889999999999999             


Q ss_pred             CCcEEeeCCCCCceeeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-ccC-Ccceeeh---hHHHHHc
Q psy6542         146 VPCLHFRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLF  216 (334)
Q Consensus       146 ~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~  216 (334)
                         |+||||||+|||++.++.+||+|||+|+......    ..+..|++.|++||+.. ..+ +++|+|+   ++|++++
T Consensus       161 ---ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~  237 (301)
T d1lufa_         161 ---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFS  237 (301)
T ss_dssp             ---CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             ---eEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHc
Confidence               9999999999999999999999999998654432    22356788899999743 334 4667777   7888888


Q ss_pred             CCCCCCCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccc
Q psy6542         217 PNRLELHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSA  296 (334)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  296 (334)
                      ++.+||.+.+.....                     ..    +....  +.    +....+++++..  +...|...+|.
T Consensus       238 ~~~~p~~~~~~~e~~---------------------~~----v~~~~--~~----~~p~~~~~~~~~--li~~cl~~~P~  284 (301)
T d1lufa_         238 YGLQPYYGMAHEEVI---------------------YY----VRDGN--IL----ACPENCPLELYN--LMRLCWSKLPA  284 (301)
T ss_dssp             TTCCTTTTSCHHHHH---------------------HH----HHTTC--CC----CCCTTCCHHHHH--HHHHHTCSSGG
T ss_pred             cCCCCCCCCCHHHHH---------------------HH----HHcCC--CC----CCCccchHHHHH--HHHHHcCCChh
Confidence            877777554311100                     01    11100  00    112234455555  77777888888


Q ss_pred             cch-hHHHHHHHHH
Q psy6542         297 HKC-SQELLGSMAR  309 (334)
Q Consensus       297 ~r~-~~~lL~~l~~  309 (334)
                      .|| +.++++.|.+
T Consensus       285 ~RPt~~ev~~~L~~  298 (301)
T d1lufa_         285 DRPSFCSIHRILQR  298 (301)
T ss_dssp             GSCCHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHH
Confidence            888 7777776665

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-34  Score=261.02  Aligned_cols=241  Identities=14%  Similarity=0.011  Sum_probs=169.2

Q ss_pred             CCCceEEEeceeCCCC---CcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec-CCeEEEE
Q psy6542          12 RVSKWRVKPPSLKPLG---FPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE-PNSHYII   87 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~---~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~-~~~~~iv   87 (334)
                      +|+.+.||+|.+..++   ..||||.++.... ....+.+.+|+++|++++||||        |++++++.+ ++.+++|
T Consensus        37 ~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~HpnI--------v~~~g~~~~~~~~~~lv  107 (311)
T d1r0pa_          37 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITD-IGEVSQFLTEGIIMKDFSHPNV--------LSLLGICLRSEGSPLVV  107 (311)
T ss_dssp             EETTEEEEEEEECC----CEEEEEEEECCCCC-HHHHHHHHHHHHHHHTCCCTTB--------CCCCEEEEETTTEEEEE
T ss_pred             ecCCeEEEEEEEECCCCEEEEEEEEEECcccC-HHHHHHHHHHHHHHHhCCCCCE--------eEEeEEEEecCCceEEE
Confidence            6788899999987654   3689999975443 3345678899999999999999        999999765 5689999


Q ss_pred             EEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          88 GVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        88 mEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      ||||+++ +..+........   .....+.++.|++.||.|||+.+                |+||||||+|||+++++.
T Consensus       108 ~E~~~~g~l~~~~~~~~~~~---~~~~~~~i~~qia~gL~~lH~~~----------------iiHrDLK~~NILl~~~~~  168 (311)
T d1r0pa_         108 LPYMKHGDLRNFIRNETHNP---TVKDLIGFGLQVAKGMKFLASKK----------------FVHRDLAARNCMLDEKFT  168 (311)
T ss_dssp             EECCTTCBHHHHHHCTTCCC---BHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCSGGGEEECTTCC
T ss_pred             EEEeecCchhhhhccccccc---hHHHHHHHHHHHHHhhhhhcccC----------------cccCCccHHhEeECCCCC
Confidence            9999998 444433332222   34445678889999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCCC------CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCCCCcccchh
Q psy6542         167 VRISDLGLACDFSKKKP------HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELIF  235 (334)
Q Consensus       167 vkl~DFGla~~~~~~~~------~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i~  235 (334)
                      +||+|||+++.......      ....||+.|++||+..  ..+..+|+|+   ++||+++++.+|+...+.....    
T Consensus       169 ~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~----  244 (311)
T d1r0pa_         169 VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDIT----  244 (311)
T ss_dssp             EEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CH----
T ss_pred             EEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHH----
Confidence            99999999987654432      2245788999999743  3345677777   7788877777654332211111    


Q ss_pred             cccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHHHhCC
Q psy6542         236 MDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMARKAGK  313 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~~~~~  313 (334)
                                       ..+...  .    ++.    ..+.+++++.+  +..+|...+|..|| +.++++++.+....
T Consensus       245 -----------------~~i~~g--~----~~~----~p~~~~~~l~~--li~~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         245 -----------------VYLLQG--R----RLL----QPEYCPDPLYE--VMLKCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             -----------------HHHHTT--C----CCC----CCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             -----------------HHHHcC--C----CCC----CcccCcHHHHH--HHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence                             111100  0    011    11233444555  77788888888889 88888888765433

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=261.02  Aligned_cols=242  Identities=16%  Similarity=0.033  Sum_probs=159.7

Q ss_pred             CCCceEEEeceeCC-----CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeec-CCeE
Q psy6542          12 RVSKWRVKPPSLKP-----LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSE-PNSH   84 (334)
Q Consensus        12 ~~~~~~V~~a~~~~-----~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~-~~~~   84 (334)
                      +|+.+.||+|.+..     +++.||||+++...... ..+.+.+|..++.++ +|+||        |.+++++.+ ++.+
T Consensus        23 ~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~-~~~~~~~e~~~l~~~~~h~~i--------v~~~~~~~~~~~~~   93 (299)
T d1ywna1          23 RGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS-EHRALMSELKILIHIGHHLNV--------VNLLGACTKPGGPL   93 (299)
T ss_dssp             ECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHH-HHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSTTSCC
T ss_pred             ecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcH-HHHHHHHHHHHHHhhcCCCeE--------EEeeeeeccCCCeE
Confidence            68889999998654     45789999998655433 344566777777776 67888        999988765 4579


Q ss_pred             EEEEEccCCC-hhHHhhhhhhh------------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEe
Q psy6542          85 YIIGVRQSGP-KDQISRSKINR------------YHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHF  151 (334)
Q Consensus        85 ~ivmEy~~g~-l~~l~~~~~~~------------~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiH  151 (334)
                      ++|||||+|| +..+.......            ........++.++.||+.||.|||+++                |+|
T Consensus        94 ~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~----------------ivH  157 (299)
T d1ywna1          94 MVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK----------------CIH  157 (299)
T ss_dssp             EEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTT----------------CCC
T ss_pred             EEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCC----------------CcC
Confidence            9999999988 44433332211            011245567778889999999999999                999


Q ss_pred             eCCCCCceeeCCCCCEEEEecccccccCCCC----CCccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCCC
Q psy6542         152 RDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLEL  222 (334)
Q Consensus       152 rDlKp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~~  222 (334)
                      |||||+|||+++++.+||+|||+|+......    .....||+.|++||+.. .. +..+|+|+   ++|++++++.+||
T Consensus       158 rDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~  237 (299)
T d1ywna1         158 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY  237 (299)
T ss_dssp             SCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred             CcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCC
Confidence            9999999999999999999999998654433    23456899999999853 33 44667777   7788887778787


Q ss_pred             CCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hH
Q psy6542         223 HPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQ  301 (334)
Q Consensus       223 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~  301 (334)
                      .+.+.....                        ...+....  ++    +.....++++.+  +..+|...+|..|+ +.
T Consensus       238 ~~~~~~~~~------------------------~~~~~~~~--~~----~~~~~~~~~l~~--li~~cl~~dP~~Rpt~~  285 (299)
T d1ywna1         238 PGVKIDEEF------------------------CRRLKEGT--RM----RAPDYTTPEMYQ--TMLDCWHGEPSQRPTFS  285 (299)
T ss_dssp             TTCCCSHHH------------------------HHHHHHTC--CC----CCCTTCCHHHHH--HHHHHTCSSGGGSCCHH
T ss_pred             CCCCHHHHH------------------------HHHHhcCC--CC----CCCccCCHHHHH--HHHHHcCCChhHCcCHH
Confidence            554421100                        00010000  00    111233444445  77788888888888 88


Q ss_pred             HHHHHHHHH
Q psy6542         302 ELLGSMARK  310 (334)
Q Consensus       302 ~lL~~l~~~  310 (334)
                      +++++|.+.
T Consensus       286 eil~~L~~i  294 (299)
T d1ywna1         286 ELVEHLGNL  294 (299)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888653

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=263.51  Aligned_cols=242  Identities=13%  Similarity=0.030  Sum_probs=171.8

Q ss_pred             CCCceEEEeceeCCCCCc--EEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFP--IQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~--vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~ivm   88 (334)
                      +|+.+.||+|.++.+|..  ||||.++....+ ...+.+.+|+++|+++ +||||        |++++++.+++.+||||
T Consensus        20 ~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~E~~~l~~l~~HpnI--------v~~~~~~~~~~~~~iV~   90 (309)
T d1fvra_          20 EGNFGQVLKARIKKDGLRMDAAIKRMKEYASK-DDHRDFAGELEVLCKLGHHPNI--------INLLGACEHRGYLYLAI   90 (309)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTB--------CCEEEEEEETTEEEEEE
T ss_pred             eCCCcEEEEEEECCCCeEEEEEEEEECcccCh-HHHHHHHHHHHHHHhccCCCCE--------eeEEEEEecCCeeEEEE
Confidence            588899999999998874  677877644432 2456788999999998 79999        99999999999999999


Q ss_pred             EccCCC-hhHHhhhh-h-----------hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCC
Q psy6542          89 VRQSGP-KDQISRSK-I-----------NRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK  155 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~-~-----------~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlK  155 (334)
                      ||++|| +..++... .           ...........+.++.||+.||.|||+++                |+|||||
T Consensus        91 ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~----------------iiHrDlk  154 (309)
T d1fvra_          91 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ----------------FIHRDLA  154 (309)
T ss_dssp             CCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCS
T ss_pred             EecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCC----------------ccccccc
Confidence            999988 43333221 1           01112245566778889999999999999                9999999


Q ss_pred             CCceeeCCCCCEEEEecccccccCCCCCC-ccccCcccccccccc-ccC-Ccceeeh---hHHHHHcCCCCCCCCCCCCC
Q psy6542         156 PANILLDEHGHVRISDLGLACDFSKKKPH-ASVESDCILHGYIKK-LGG-PFVSAWQ---TRYAKLFPNRLELHPESGQS  229 (334)
Q Consensus       156 p~NiLl~~~~~vkl~DFGla~~~~~~~~~-~~~~t~~~~~~~v~~-~~~-~~~~~w~---~~~~~l~~~~~~~~~~~~~~  229 (334)
                      |+|||++.++.+||+|||+|+........ ...||..|++||+.. ..+ ..+|+|+   ++|++++++.+||.+.+...
T Consensus       155 p~NIL~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~  234 (309)
T d1fvra_         155 ARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE  234 (309)
T ss_dssp             GGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH
T ss_pred             cceEEEcCCCceEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHH
Confidence            99999999999999999999866555433 456788999999853 334 4566677   77888888888876544111


Q ss_pred             cccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHH
Q psy6542         230 KPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMA  308 (334)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~  308 (334)
                      ..+                         .+...  .++    +....+++.+..  +..+|...+|..|| +.+++++|.
T Consensus       235 ~~~-------------------------~i~~~--~~~----~~~~~~~~~~~~--li~~cl~~dP~~RPs~~eil~~L~  281 (309)
T d1fvra_         235 LYE-------------------------KLPQG--YRL----EKPLNCDDEVYD--LMRQCWREKPYERPSFAQILVSLN  281 (309)
T ss_dssp             HHH-------------------------HGGGT--CCC----CCCTTBCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHH-------------------------HHHhc--CCC----CCCccCCHHHHH--HHHHHcCCChhHCcCHHHHHHHHH
Confidence            110                         01000  000    111233444445  88889999999999 888888877


Q ss_pred             HHh
Q psy6542         309 RKA  311 (334)
Q Consensus       309 ~~~  311 (334)
                      +..
T Consensus       282 ~i~  284 (309)
T d1fvra_         282 RML  284 (309)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-35  Score=269.38  Aligned_cols=187  Identities=16%  Similarity=0.144  Sum_probs=142.0

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec--------CCe
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE--------PNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~--------~~~   83 (334)
                      +|+...||+|.++.+|+.||||++..........+.+.+|+++|++++||||        +++++++..        ++.
T Consensus        20 ~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~ni--------i~~~~~~~~~~~~~~~~~~~   91 (318)
T d3blha1          20 QGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV--------VNLIEICRTKASPYNRCKGS   91 (318)
T ss_dssp             ECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTB--------CCEEEEEEC----------C
T ss_pred             cCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCc--------cceEeeeecccccccccCce
Confidence            4677899999999999999999998766554455678889999999999999        999888764        356


Q ss_pred             EEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC
Q psy6542          84 HYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE  163 (334)
Q Consensus        84 ~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~  163 (334)
                      +|+||||+.+++..........+.+   ..+..++.|++.||.|||+++                |+||||||+|||++.
T Consensus        92 ~~iv~e~~~~~~~~~~~~~~~~~~~---~~~~~i~~qil~~l~~lH~~~----------------ivHrDlKp~NILl~~  152 (318)
T d3blha1          92 IYLVFDFCEHDLAGLLSNVLVKFTL---SEIKRVMQMLLNGLYYIHRNK----------------ILHRDMKAANVLITR  152 (318)
T ss_dssp             EEEEEECCCEEHHHHHTCTTCCCCH---HHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECT
T ss_pred             EEEEEeccCCCccchhhhccccccc---HHHHHHHHHHHHHHHHhccCC----------------EEecCcCchheeecC
Confidence            8999999999943333333334433   444566779999999999999                999999999999999


Q ss_pred             CCCEEEEecccccccCCCC------CCccccCccccccccc--cccC-Ccceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         164 HGHVRISDLGLACDFSKKK------PHASVESDCILHGYIK--KLGG-PFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       164 ~~~vkl~DFGla~~~~~~~------~~~~~~t~~~~~~~v~--~~~~-~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      ++.+||+|||+|+......      ..+.+||+.|++||+.  ..+| +.+|+|+   ++|+++. +.+||.+..
T Consensus       153 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~-g~~pf~~~~  226 (318)
T d3blha1         153 DGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT-RSPIMQGNT  226 (318)
T ss_dssp             TSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-SSCSCCCSS
T ss_pred             CCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhh-CCCCCCCCC
Confidence            9999999999998664322      2345789999999984  2334 5666777   5566555 678886654

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=262.50  Aligned_cols=243  Identities=12%  Similarity=0.023  Sum_probs=174.6

Q ss_pred             CCCceEEEeceeC-----CCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          12 RVSKWRVKPPSLK-----PLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~-----~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      +|+.+.||+|.++     .+++.||||+++..... .....+.+|++++++++||||        |++++++..++..++
T Consensus        30 ~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~-~~~~~~~~E~~il~~l~h~nI--------v~~~~~~~~~~~~~l  100 (308)
T d1p4oa_          30 QGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASM-RERIEFLNEASVMKEFNCHHV--------VRLLGVVSQGQPTLV  100 (308)
T ss_dssp             ECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCH-HHHHHHHHHHHHGGGCCCTTB--------CCEEEEECSSSSCEE
T ss_pred             eCCCeEEEEEEECCcccCCCCcEEEEEEECcccCh-HHHHHHHHHHHHHHHcCCCCE--------eeeeeEEecCCceeE
Confidence            4788899999875     34678999999865433 344578899999999999999        999999999999999


Q ss_pred             EEEccCCC-h-hHHhhhhhh-----hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCce
Q psy6542          87 IGVRQSGP-K-DQISRSKIN-----RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANI  159 (334)
Q Consensus        87 vmEy~~g~-l-~~l~~~~~~-----~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~Ni  159 (334)
                      |||||.+| + +++......     ..........+.++.|++.||.|||+++                |+||||||+||
T Consensus       101 v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~----------------ivHrDlk~~Ni  164 (308)
T d1p4oa_         101 IMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK----------------FVHRDLAARNC  164 (308)
T ss_dssp             EEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT----------------CBCSCCSGGGE
T ss_pred             EEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCC----------------eeeceEcCCce
Confidence            99999998 4 333322211     1111244556778889999999999999                99999999999


Q ss_pred             eeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCCCCCc
Q psy6542         160 LLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPESGQSK  230 (334)
Q Consensus       160 Ll~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~~~~~  230 (334)
                      |++.++++||+|||+|+.......    ....||+.|++|+... ..++ .+|+|+   ++|+++++..+||.+.+....
T Consensus       165 Lld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~  244 (308)
T d1p4oa_         165 MVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQV  244 (308)
T ss_dssp             EECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHH
T ss_pred             eecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            999999999999999986654432    3345789999999743 3344 567777   788888887777655431111


Q ss_pred             ccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-hHHHHHHHHH
Q psy6542         231 PELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-SQELLGSMAR  309 (334)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~~~lL~~l~~  309 (334)
                      ..                     .+.   ..   .++    +..+..++.+.+  +..+|.+.+|..|| +.++++.|.+
T Consensus       245 ~~---------------------~i~---~~---~~~----~~p~~~~~~l~~--li~~cl~~~P~~RPs~~~il~~L~~  291 (308)
T d1p4oa_         245 LR---------------------FVM---EG---GLL----DKPDNCPDMLFE--LMRMCWQYNPKMRPSFLEIISSIKE  291 (308)
T ss_dssp             HH---------------------HHH---TT---CCC----CCCTTCCHHHHH--HHHHHTCSSGGGSCCHHHHHHHHGG
T ss_pred             HH---------------------HHH---hC---CCC----CCcccchHHHHH--HHHHHcCCChhHCcCHHHHHHHHHH
Confidence            11                     111   00   001    112334445555  77778888888888 8889988876


Q ss_pred             HhC
Q psy6542         310 KAG  312 (334)
Q Consensus       310 ~~~  312 (334)
                      ...
T Consensus       292 ~~~  294 (308)
T d1p4oa_         292 EME  294 (308)
T ss_dssp             GSC
T ss_pred             hcC
Confidence            543

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-34  Score=258.96  Aligned_cols=241  Identities=12%  Similarity=0.056  Sum_probs=170.4

Q ss_pred             CCCceEEEeceeCCCC-------CcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCe
Q psy6542          12 RVSKWRVKPPSLKPLG-------FPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNS   83 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~-------~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~   83 (334)
                      +|+.+.||+|.+..++       ..||||++++...+. ....+.+|..++.++ +||||        |++++++.+++.
T Consensus        23 ~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~-~~~~~~~e~~~l~~~~~HpnI--------v~~~~~~~~~~~   93 (299)
T d1fgka_          23 EGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK-DLSDLISEMEMMKMIGKHKNI--------INLLGACTQDGP   93 (299)
T ss_dssp             -----CEEEEEEECC----CCCEEEEEEECCCTTCCHH-HHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSS
T ss_pred             ecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChH-HHHHHHHHHHHHHHhcCCCeE--------EecccccccCCe
Confidence            5888899999987665       379999998765533 345677788888887 89999        999999999999


Q ss_pred             EEEEEEccCCC-hhHHhhhhhh------------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE
Q psy6542          84 HYIIGVRQSGP-KDQISRSKIN------------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH  150 (334)
Q Consensus        84 ~~ivmEy~~g~-l~~l~~~~~~------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii  150 (334)
                      +|+|||||++| +..++.....            .........++.++.||+.||+|||+++                |+
T Consensus        94 ~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~----------------iv  157 (299)
T d1fgka_          94 LYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK----------------CI  157 (299)
T ss_dssp             CEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTT----------------CC
T ss_pred             EEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCC----------------EE
Confidence            99999999998 4433332210            0112356667788889999999999999                99


Q ss_pred             eeCCCCCceeeCCCCCEEEEecccccccCCCC----CCccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCC
Q psy6542         151 FRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       151 HrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~  221 (334)
                      ||||||+|||++.++.+||+|||+++......    .....+++.|++||+. ...|+ ++|+|+   ++|++++.+.+|
T Consensus       158 HrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p  237 (299)
T d1fgka_         158 HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP  237 (299)
T ss_dssp             CSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             eeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCC
Confidence            99999999999999999999999999665443    2335678899999974 33444 566677   678888878888


Q ss_pred             CCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-h
Q psy6542         222 LHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-S  300 (334)
Q Consensus       222 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~  300 (334)
                      |.+.+...                         +...+....  ++    +....+++.+.+  +..+|.+.+|..|| +
T Consensus       238 ~~~~~~~~-------------------------~~~~i~~~~--~~----~~p~~~~~~l~~--li~~cl~~dP~~Rps~  284 (299)
T d1fgka_         238 YPGVPVEE-------------------------LFKLLKEGH--RM----DKPSNCTNELYM--MMRDCWHAVPSQRPTF  284 (299)
T ss_dssp             STTCCHHH-------------------------HHHHHHTTC--CC----CCCSSCCHHHHH--HHHHHTCSSGGGSCCH
T ss_pred             CCCCCHHH-------------------------HHHHHHcCC--CC----CCCccchHHHHH--HHHHHccCCHhHCcCH
Confidence            75443110                         011111100  01    112334455555  88899999999999 8


Q ss_pred             HHHHHHHHHH
Q psy6542         301 QELLGSMARK  310 (334)
Q Consensus       301 ~~lL~~l~~~  310 (334)
                      .++++.|.+.
T Consensus       285 ~eil~~L~~i  294 (299)
T d1fgka_         285 KQLVEDLDRI  294 (299)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888664

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-33  Score=255.96  Aligned_cols=242  Identities=11%  Similarity=0.016  Sum_probs=174.3

Q ss_pred             CCCceEEEecee-----CCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhc-CCCCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSL-----KPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHL-RNEPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~-----~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l-~h~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +|+.+.||+|..     ..+++.||||+++...... ....+.+|+.+++.+ +||||        |++++++.+++.+|
T Consensus        33 ~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~-~~~~~~~E~~~~~~l~~HpnI--------v~~~g~~~~~~~~~  103 (311)
T d1t46a_          33 AGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLT-EREALMSELKVLSYLGNHMNI--------VNLLGACTIGGPTL  103 (311)
T ss_dssp             ECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH-HHHHHHHHHHHHHHHCCCTTB--------CCEEEEECSSSSCE
T ss_pred             ecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHH-HHHHHHHHHHHHHhccCCCCE--------EEEEEEEeeCCEEE
Confidence            578889999975     4677899999998765433 445788999999999 69999        99999999999999


Q ss_pred             EEEEccCCC-h-hHHhhhhhh-------------hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEE
Q psy6542          86 IIGVRQSGP-K-DQISRSKIN-------------RYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLH  150 (334)
Q Consensus        86 ivmEy~~g~-l-~~l~~~~~~-------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~ii  150 (334)
                      +|||||+|| + +++......             ............++.||+.||.|||+++                ++
T Consensus       104 lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~----------------iv  167 (311)
T d1t46a_         104 VITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN----------------CI  167 (311)
T ss_dssp             EEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT----------------CC
T ss_pred             EEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC----------------ee
Confidence            999999998 4 334332210             1112345667788889999999999999                99


Q ss_pred             eeCCCCCceeeCCCCCEEEEecccccccCCCCC----CccccCcccccccccc-cc-CCcceeeh---hHHHHHcCCCCC
Q psy6542         151 FRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVESDCILHGYIKK-LG-GPFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       151 HrDlKp~NiLl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~~~~~~v~~-~~-~~~~~~w~---~~~~~l~~~~~~  221 (334)
                      ||||||+||+++.++.+|++|||+++.......    ....||+.|++||+.. .. +..+|+|+   ++|++++.+.++
T Consensus       168 HrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~  247 (311)
T d1t46a_         168 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSP  247 (311)
T ss_dssp             CSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             ecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCC
Confidence            999999999999999999999999997655432    3356789999999753 33 44667777   778888878877


Q ss_pred             CCCCCCCCcccchhcccccccccccccHhHHHHHHHhhccCchhhcCCCcccCCCCCCCCChhhHHHhhhhcccccch-h
Q psy6542         222 LHPESGQSKPELIFMDQIEEVSQDLITVKGEQCVQLKLTRDTRIVLTNPVSQIKGPFPHVDEIGLKEWSLSLRSAHKC-S  300 (334)
Q Consensus       222 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~-~  300 (334)
                      +.+.+.....                        ...+....  +..    .....+..+.+  +..+|.+.+|..|| +
T Consensus       248 ~~~~~~~~~~------------------------~~~i~~~~--~~~----~~~~~~~~l~~--Li~~cl~~dP~~RPs~  295 (311)
T d1t46a_         248 YPGMPVDSKF------------------------YKMIKEGF--RML----SPEHAPAEMYD--IMKTCWDADPLKRPTF  295 (311)
T ss_dssp             STTCCSSHHH------------------------HHHHHHTC--CCC----CCTTSCHHHHH--HHHHHTCSSGGGSCCH
T ss_pred             CCCCCHHHHH------------------------HHHHhcCC--CCC----CcccccHHHHH--HHHHHcCCChhHCcCH
Confidence            6554422111                        00010000  000    11223333444  78888888999999 8


Q ss_pred             HHHHHHHHHH
Q psy6542         301 QELLGSMARK  310 (334)
Q Consensus       301 ~~lL~~l~~~  310 (334)
                      .++++.|.+.
T Consensus       296 ~~il~~L~~~  305 (311)
T d1t46a_         296 KQIVQLIEKQ  305 (311)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888877664

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-34  Score=264.20  Aligned_cols=184  Identities=17%  Similarity=0.173  Sum_probs=138.6

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC-----eEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN-----SHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~-----~~~i   86 (334)
                      +|+.+.||+|.++.+|+.||||++++... ....+.+.+|+++|++++||||        +++++++..+.     .+|+
T Consensus        18 ~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~Ei~il~~l~hp~i--------v~~~~~~~~~~~~~~~~~~l   88 (345)
T d1pmea_          18 EGAYGMVCSAYDNVNKVRVAIKKISPFEH-QTYCQRTLREIKILLRFRHENI--------IGINDIIRAPTIEQMKDVYL   88 (345)
T ss_dssp             ---CCCEEEEEETTTCSEEEEEEECCTTC-HHHHHHHHHHHHHHHHCCCTTB--------CCCCEEECCSSTTTCCCEEE
T ss_pred             eccCeEEEEEEECCCCcEEEEEEEehhcC-hHHHHHHHHHHHHHHHcCCCCC--------CcEEEEEeeccccccceEEE
Confidence            57888999999999999999999986553 3345678889999999999999        99999987542     3566


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHGH  166 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~~  166 (334)
                      +|+++.|++..+...  ..+   ....+..++.|++.||+|||+++                |+||||||+|||+++++.
T Consensus        89 ~~~~~~g~L~~~l~~--~~l---~~~~i~~i~~qil~al~yLH~~~----------------iiHRDIKp~NILl~~~~~  147 (345)
T d1pmea_          89 VTHLMGADLYKLLKT--QHL---SNDHICYFLYQILRGLKYIHSAN----------------VLHRDLKPSNLLLNTTCD  147 (345)
T ss_dssp             EEECCCEEHHHHHHH--CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCCGGGEEECTTCC
T ss_pred             EEeecCCchhhhhhc--CCC---CHHHHHHHHHHHHHHHHHHHHCC----------------CcCCCCCcceEEECCCCC
Confidence            655554445444332  233   45556677789999999999999                999999999999999999


Q ss_pred             EEEEecccccccCCCC-----CCccccCccccccccc--cccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK-----PHASVESDCILHGYIK--KLGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~-----~~~~~~t~~~~~~~v~--~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +||+|||+|+......     ....+||+.|++||+.  ...++ .+|+|+   ++|++ .++.+||.+.+
T Consensus       148 ~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~em-l~g~~pf~~~~  217 (345)
T d1pmea_         148 LKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM-LSNRPIFPGKH  217 (345)
T ss_dssp             EEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHH-HHSSCSCCCSS
T ss_pred             EEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHH-hhCCCCCCCCC
Confidence            9999999998654432     3445689999999984  23344 557777   55555 45567886654

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-34  Score=260.24  Aligned_cols=229  Identities=16%  Similarity=0.181  Sum_probs=165.3

Q ss_pred             CCCceEEEecee---CCCCCcEEEEEeeCCCc--chHHhhhHHHHHHHHHhcCC-CCcccccccceeeEEEEeecCCeEE
Q psy6542          12 RVSKWRVKPPSL---KPLGFPIQIGMLRHRPH--ESRVAKWRPYIQEIFNHLRN-EPFKKCVLLFKMNLYKVTSEPNSHY   85 (334)
Q Consensus        12 ~~~~~~V~~a~~---~~~~~~vAIK~l~~~~~--~~~~~~~~~~E~~il~~l~h-~~i~~~~~~~~v~~~~~~~~~~~~~   85 (334)
                      +|+.+.||+|.+   +.+|+.||||++++...  +....+.+.+|++++++++| |||        +++++++.+++.+|
T Consensus        34 ~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnI--------v~~~~~~~~~~~~~  105 (322)
T d1vzoa_          34 TGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFL--------VTLHYAFQTETKLH  105 (322)
T ss_dssp             ETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTB--------CCEEEEEEETTEEE
T ss_pred             cCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeE--------EEeeeeeccCCcee
Confidence            477889999986   56899999999986543  22345567789999999987 789        99999999999999


Q ss_pred             EEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          86 IIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        86 ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      ++|||+.|+ +....... ...   .+.....++.||+.||.|||+++                |+||||||+|||++.+
T Consensus       106 ~v~e~~~~~~L~~~i~~~-~~~---~e~~~~~~~~Qi~~al~~lH~~~----------------ivHrDiKp~Nill~~~  165 (322)
T d1vzoa_         106 LILDYINGGELFTHLSQR-ERF---TEHEVQIYVGEIVLALEHLHKLG----------------IIYRDIKLENILLDSN  165 (322)
T ss_dssp             EEECCCCSCBHHHHHHHH-SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTT
T ss_pred             eeeecccccHHHHHHHhc-ccc---cHHHHHHHHHHHHHHHHHhhcCC----------------EEeccCCccceeecCC
Confidence            999999998 43332322 233   33444566779999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCC---CCccccCcccccccccc---cc-CCcceeeh---hHHHHHcCCCCCCCCCCCCCcccch
Q psy6542         165 GHVRISDLGLACDFSKKK---PHASVESDCILHGYIKK---LG-GPFVSAWQ---TRYAKLFPNRLELHPESGQSKPELI  234 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~---~~~~~~t~~~~~~~v~~---~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~~~~i  234 (334)
                      +.+||+|||+|+.+....   ..+..|++.+++||+..   .+ +.++|+|+   ++|++++ +..||.+.+.......+
T Consensus       166 ~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyellt-G~~PF~~~~~~~~~~~i  244 (322)
T d1vzoa_         166 GHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLT-GASPFTVDGEKNSQAEI  244 (322)
T ss_dssp             SCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHH-SSCTTSCTTSCCCHHHH
T ss_pred             CCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHh-CCCCCCCCCHHHHHHHH
Confidence            999999999998764433   34567889999998742   23 34567788   5566655 66788887766555544


Q ss_pred             hcccccc---cccccccHhHHHHHHHhhccCchhhcCCC
Q psy6542         235 FMDQIEE---VSQDLITVKGEQCVQLKLTRDTRIVLTNP  270 (334)
Q Consensus       235 ~~~~~~~---~~~~~~~~~~~~~i~~~~~~~p~~r~~~~  270 (334)
                      .......   .+... +......+...+..+|..|+++.
T Consensus       245 ~~~~~~~~~~~~~~~-s~~~~~li~~~l~~dP~~R~s~~  282 (322)
T d1vzoa_         245 SRRILKSEPPYPQEM-SALAKDLIQRLLMKDPKKRLGCG  282 (322)
T ss_dssp             HHHHHHCCCCCCTTS-CHHHHHHHHHHTCSSGGGSTTSS
T ss_pred             HHhcccCCCCCcccC-CHHHHHHHHHHcccCHHHcCCCC
Confidence            4332221   11111 11344556666677787777653

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=1.6e-32  Score=249.29  Aligned_cols=184  Identities=12%  Similarity=0.014  Sum_probs=141.2

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEcc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQ   91 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~   91 (334)
                      +|+.+.||+|.++.+|+.||||++.....    .+.+..|+++++.++|+|+       ++.+++++.+++..++||||+
T Consensus        17 ~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~E~~i~~~l~~~~~-------i~~~~~~~~~~~~~~ivme~~   85 (299)
T d1ckia_          17 SGSFGDIYLGTDIAAGEEVAIKLECVKTK----HPQLHIESKIYKMMQGGVG-------IPTIRWCGAEGDYNVMVMELL   85 (299)
T ss_dssp             ECSSSEEEEEEETTTTEEEEEEEEESCTT----SCCHHHHHHHHHHSTTSTT-------CCCEEEEEEETTEEEEEEECC
T ss_pred             eCCCcEEEEEEECCCCCEEEEEEEchhcc----CHHHHHHHHHHHHccCCCc-------ccEEEEEEecCCEEEEEEEEc
Confidence            57888999999999999999999886543    2356789999999998875       256677778889999999999


Q ss_pred             CCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC---CCCEE
Q psy6542          92 SGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE---HGHVR  168 (334)
Q Consensus        92 ~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~---~~~vk  168 (334)
                      +|++..........+   ....++.++.|++.||+|||+++                |+||||||+|||++.   +..+|
T Consensus        86 ~~~l~~~~~~~~~~~---~~~~~~~~~~qi~~~l~~lH~~~----------------iiHrDiKp~NIl~~~~~~~~~vk  146 (299)
T d1ckia_          86 GPSLEDLFNFCSRKF---SLKTVLLLADQMISRIEYIHSKN----------------FIHRDVKPDNFLMGLGKKGNLVY  146 (299)
T ss_dssp             CCBHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECSCCCGGGEEECCGGGTTCEE
T ss_pred             CCchhhhhhhccCCC---cHHHHHHHHHHHHHHHHHHHHCC----------------eeeccCCHhhccccccCCCceee
Confidence            988544434333344   44556677889999999999999                999999999999865   45699


Q ss_pred             EEecccccccCCCC---------CCccccCcccccccccc-ccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         169 ISDLGLACDFSKKK---------PHASVESDCILHGYIKK-LGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       169 l~DFGla~~~~~~~---------~~~~~~t~~~~~~~v~~-~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      |+|||+|+.+....         .....||+.|++||+.. ..++ .+|+|+   ++|+++ ++..||...+
T Consensus       147 l~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~-tg~~P~~~~~  217 (299)
T d1ckia_         147 IIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFN-LGSLPWQGLK  217 (299)
T ss_dssp             ECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHH-HSSCTTCCCC
T ss_pred             eeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHH-hCCCcccccc
Confidence            99999999765432         23457899999999843 3344 556666   556655 5566776554

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.98  E-value=3.6e-32  Score=246.51  Aligned_cols=183  Identities=13%  Similarity=0.034  Sum_probs=142.7

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCC-CCcccccccceeeEEEEeecCCeEEEEEEc
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRN-EPFKKCVLLFKMNLYKVTSEPNSHYIIGVR   90 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h-~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy   90 (334)
                      +|+.+.||+|.++.+|+.||||++.....    ...+.+|+++++.++| +|+        +.+++++.++...|+||||
T Consensus        15 ~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~e~~~~~~l~~~~~i--------~~~~~~~~~~~~~~~vme~   82 (293)
T d1csna_          15 EGSFGVIFEGTNLLNNQQVAIKFEPRRSD----APQLRDEYRTYKLLAGCTGI--------PNVYYFGQEGLHNVLVIDL   82 (293)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEEEEECCTT----SCCHHHHHHHHHHTTTCTTC--------CCEEEEEEETTEEEEEEEC
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEccccC----cHHHHHHHHHHHHhcCCCCC--------CEEEEEeecCCccEEEEEe
Confidence            57888999999999999999999876543    2346679999999987 788        9999999999999999999


Q ss_pred             cCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCC-----CC
Q psy6542          91 QSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDE-----HG  165 (334)
Q Consensus        91 ~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~-----~~  165 (334)
                      +.|++..+.......+   .......++.|++.||.|||+++                |+||||||+|||++.     ++
T Consensus        83 ~~~~l~~~~~~~~~~~---~~~~~~~i~~q~~~~l~~lH~~g----------------iiHrDiKp~Nili~~~~~~~~~  143 (293)
T d1csna_          83 LGPSLEDLLDLCGRKF---SVKTVAMAAKQMLARVQSIHEKS----------------LVYRDIKPDNFLIGRPNSKNAN  143 (293)
T ss_dssp             CCCBHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHHTTT----------------EECCCCCGGGEEECCSSSTTTT
T ss_pred             cCCCHHHHHHhhccch---hhHHHHHHHHHHHHHHHHHHHCC----------------ceeccCCccceeecCcccccCC
Confidence            9888655544433334   44455677789999999999999                999999999999975     57


Q ss_pred             CEEEEecccccccCCCC---------CCccccCccccccccc-cccCC-cceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKK---------PHASVESDCILHGYIK-KLGGP-FVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~---------~~~~~~t~~~~~~~v~-~~~~~-~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .+||+|||+|+.+....         .....||+.||+||+. ...++ ++|+|+   ++|++++ +.+||.+..
T Consensus       144 ~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~ellt-g~~Pf~~~~  217 (293)
T d1csna_         144 MIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLR-GSLPWQGLK  217 (293)
T ss_dssp             CEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCTTSSCC
T ss_pred             ceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHh-CCCcCCCcc
Confidence            89999999998764332         2345789999999984 33354 455555   5666655 667876554

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.98  E-value=4.5e-33  Score=256.18  Aligned_cols=178  Identities=16%  Similarity=0.165  Sum_probs=138.8

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeec--CCeEEEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSE--PNSHYIIG   88 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~--~~~~~ivm   88 (334)
                      +|+...||+|.++.+|+.||||+++...     .+++.+|+++|+.++ ||||        +++++++..  ...+|+||
T Consensus        45 ~G~fg~V~~a~~~~~~~~vAiK~i~~~~-----~~~~~~Ei~il~~l~~hpnI--------v~~~~~~~~~~~~~~~~v~  111 (328)
T d3bqca1          45 RGKYSEVFEAINITNNEKVVVKILKPVK-----KKKIKREIKILENLRGGPNI--------ITLADIVKDPVSRTPALVF  111 (328)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECSSC-----HHHHHHHHHHHHHHTTSTTB--------CCEEEEEECTTTCSEEEEE
T ss_pred             cCcCeEEEEEEECCCCCEEEEEEECHHH-----HHHHHHHHHHHHhccCCCCC--------cEEEEEEEecCCCceeEEE
Confidence            5788899999999999999999997543     345778999999996 9999        999999984  45699999


Q ss_pred             EccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC-C
Q psy6542          89 VRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG-H  166 (334)
Q Consensus        89 Ey~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~-~  166 (334)
                      |||+++ +..+    .+.+   .+..+..++.||+.||.|||+++                |+||||||+|||++.++ .
T Consensus       112 e~~~~~~L~~~----~~~l---~e~~i~~i~~qil~aL~~LH~~g----------------IvHrDiKp~NILi~~~~~~  168 (328)
T d3bqca1         112 EHVNNTDFKQL----YQTL---TDYDIRFYMYEILKALDYCHSMG----------------IMHRDVKPHNVMIDHEHRK  168 (328)
T ss_dssp             ECCCSCBGGGT----TTSC---CHHHHHHHHHHHHHHHHHHHHTT----------------EECCCCSGGGEEEETTTTE
T ss_pred             eecCCCcHHHH----hcCC---CHHHHHHHHHHHHHHHHHHhhcc----------------cccccccccceEEcCCCCe
Confidence            999998 4322    2234   33445566779999999999999                99999999999998765 5


Q ss_pred             EEEEecccccccCCCC-CCccccCcccccccccc--cc-CCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         167 VRISDLGLACDFSKKK-PHASVESDCILHGYIKK--LG-GPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       167 vkl~DFGla~~~~~~~-~~~~~~t~~~~~~~v~~--~~-~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      +||+|||+|+...... .....+|+.|++||+..  .. +..+|+|+   ++|+++. +..||....
T Consensus       169 vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~-g~~pf~~~~  234 (328)
T d3bqca1         169 LRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF-RKEPFFHGH  234 (328)
T ss_dssp             EEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH-TCSSSSCCS
T ss_pred             eeecccccceeccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhcc-CCCCCCCCc
Confidence            8999999999776554 44567899999999843  23 44566677   5555555 455665543

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=7.6e-34  Score=263.33  Aligned_cols=185  Identities=18%  Similarity=0.178  Sum_probs=139.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecC-----CeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEP-----NSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~-----~~~~i   86 (334)
                      +|+.+.||+|.++.+|+.||||++++...+....+++.+|+++|+.++|||+        |++++++...     ...++
T Consensus        28 ~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~i--------v~~~~~~~~~~~~~~~~~~~   99 (348)
T d2gfsa1          28 SGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV--------IGLLDVFTPARSLEEFNDVY   99 (348)
T ss_dssp             GGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTB--------CCCSEEECSCSSTTTCCCCE
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCe--------eeEEEEEeeccccccCceEE
Confidence            6788899999999999999999999877666666778899999999999999        9999998633     23345


Q ss_pred             EEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +|||+.|+ +..+...  +.+   .+..+..++.||+.||.|||+++                |+||||||+|||++.+|
T Consensus       100 i~~~~~gg~L~~~~~~--~~l---~e~~~~~i~~qil~aL~~LH~~g----------------iiHrDiKp~NILi~~~~  158 (348)
T d2gfsa1         100 LVTHLMGADLNNIVKC--QKL---TDDHVQFLIYQILRGLKYIHSAD----------------IIHRDLKPSNLAVNEDC  158 (348)
T ss_dssp             EEEECCSEEHHHHHTT--CCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCCCCCGGGEEECTTC
T ss_pred             EEEeecCCchhhhccc--ccc---cHHHHHHHHHHHHHHHHHHHhCC----------------CcccccCCccccccccc
Confidence            55556565 6555433  234   44555667779999999999999                99999999999999999


Q ss_pred             CEEEEecccccccCCCCCCccccCccccccccc-c-cc-CCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         166 HVRISDLGLACDFSKKKPHASVESDCILHGYIK-K-LG-GPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       166 ~vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~-~-~~-~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      .+|++|||+|...... ..+..|++.|++||+. . .. +..+|+|+   ++|++ ..+.+||.+.+.
T Consensus       159 ~~kl~dfg~a~~~~~~-~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~l-l~g~~pF~~~~~  224 (348)
T d2gfsa1         159 ELKILDFGLARHTDDE-MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAEL-LTGRTLFPGTDH  224 (348)
T ss_dssp             CEEECCC----CCTGG-GSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHH-HHSSCSCCCSSH
T ss_pred             cccccccchhcccCcc-cccccccccccCchhhcCCccCCcccchhhhhHHHHHH-HhCCCCCCCCCH
Confidence            9999999999765443 3446688999999973 2 22 44667777   55555 456678877653

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-32  Score=251.20  Aligned_cols=192  Identities=15%  Similarity=0.105  Sum_probs=136.0

Q ss_pred             eeeecCCCCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCC-
Q psy6542           4 LRRRPRESRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPN-   82 (334)
Q Consensus         4 ~~~~~~~~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~-   82 (334)
                      |+|+-+  +|++..||+|..  +|+.||||+++....   .......|+..++.++||||        |++++++.+.+ 
T Consensus         7 l~~~iG--~G~fg~Vy~~~~--~g~~vAvK~~~~~~~---~~~~~e~ei~~~~~~~HpnI--------v~~~~~~~~~~~   71 (303)
T d1vjya_           7 LQESIG--KGRFGEVWRGKW--RGEEVAVKIFSSREE---RSWFREAEIYQTVMLRHENI--------LGFIAADNKDNG   71 (303)
T ss_dssp             EEEEEE--CCSSSEEEEEEE--TTEEEEEEEECGGGH---HHHHHHHHHHTSTTCCCTTB--------CCEEEEEEEECS
T ss_pred             EEEEEe--eCCCeEEEEEEE--CCEEEEEEEECccch---hHHHHHHHHHHHhhCCCCcC--------cceEEEEEeCCC
Confidence            556655  778889999985  689999999974322   11122235555567899999        99999998543 


Q ss_pred             ---eEEEEEEccCCC-hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCc
Q psy6542          83 ---SHYIIGVRQSGP-KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPAN  158 (334)
Q Consensus        83 ---~~~ivmEy~~g~-l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~N  158 (334)
                         .+|+|||||++| +..+....  .+   .....+.++.|++.||.|||+..        -.....++|+||||||+|
T Consensus        72 ~~~~~~lv~Ey~~~g~L~~~l~~~--~l---~~~~~~~~~~~ia~gl~~lH~~~--------~~~~~~~~IvHrDlKp~N  138 (303)
T d1vjya_          72 TWTQLWLVSDYHEHGSLFDYLNRY--TV---TVEGMIKLALSTASGLAHLHMEI--------VGTQGKPAIAHRDLKSKN  138 (303)
T ss_dssp             SSEEEEEEEECCTTCBHHHHHHHC--CB---CHHHHHHHHHHHHHHHHHHHCCB--------CSTTCBCEEECSCCCGGG
T ss_pred             cceEEEEEEecccCCCHHHHHhcC--CC---CHHHHHHHHHHHHHHHHHHHHhh--------hhhccCCCeeccccCccc
Confidence               589999999988 54443322  22   44555677889999999999741        011122339999999999


Q ss_pred             eeeCCCCCEEEEecccccccCCCC------CCccccCccccccccccc--------cCCcceeeh---hHHHHHcCCCCC
Q psy6542         159 ILLDEHGHVRISDLGLACDFSKKK------PHASVESDCILHGYIKKL--------GGPFVSAWQ---TRYAKLFPNRLE  221 (334)
Q Consensus       159 iLl~~~~~vkl~DFGla~~~~~~~------~~~~~~t~~~~~~~v~~~--------~~~~~~~w~---~~~~~l~~~~~~  221 (334)
                      ||++.++.+||+|||+++......      .....||+.|++||+...        .+.++|+|+   ++|+++++ .+|
T Consensus       139 ILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg-~~~  217 (303)
T d1vjya_         139 ILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARR-CSI  217 (303)
T ss_dssp             EEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHT-BCB
T ss_pred             eEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhC-CCC
Confidence            999999999999999998765432      234568999999998532        234678888   77787764 445


Q ss_pred             CCC
Q psy6542         222 LHP  224 (334)
Q Consensus       222 ~~~  224 (334)
                      +..
T Consensus       218 ~~~  220 (303)
T d1vjya_         218 GGI  220 (303)
T ss_dssp             TTB
T ss_pred             CCc
Confidence            433

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-33  Score=258.98  Aligned_cols=186  Identities=16%  Similarity=0.077  Sum_probs=139.7

Q ss_pred             CCCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeec------CCeE
Q psy6542          11 SRVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSE------PNSH   84 (334)
Q Consensus        11 ~~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~------~~~~   84 (334)
                      -+|+.+.||+|.++.||+.||||++++........+++.+|+.+++.++||||        |+++++|..      .+.+
T Consensus        26 G~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnI--------v~~~~~f~~~~~~~~~~~~   97 (355)
T d2b1pa1          26 GSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI--------ISLLNVFTPQKTLEEFQDV   97 (355)
T ss_dssp             SCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTB--------CCCSEEECSCCSTTTCCEE
T ss_pred             ecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCe--------eEEEEEEecccccccCcee
Confidence            36788899999999999999999999877665566678899999999999999        999999963      3679


Q ss_pred             EEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCC
Q psy6542          85 YIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEH  164 (334)
Q Consensus        85 ~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~  164 (334)
                      |+|||||.|++.....   ..+   ....+..++.|++.||.|||++|                |+||||||+|||++.+
T Consensus        98 ~iv~Ey~~~~l~~~~~---~~~---~~~~i~~~~~qil~gl~~LH~~g----------------iiHrDlKP~Nil~~~~  155 (355)
T d2b1pa1          98 YLVMELMDANLCQVIQ---MEL---DHERMSYLLYQMLCGIKHLHSAG----------------IIHRDLKPSNIVVKSD  155 (355)
T ss_dssp             EEEEECCSEEHHHHHT---SCC---CHHHHHHHHHHHHHHHHHHHHTT----------------CCCSCCCGGGEEECTT
T ss_pred             EEEEeccchHHHHhhh---cCC---CHHHHHHHHHHHHHHHHHhhhcc----------------cccccCCccccccccc
Confidence            9999999998432222   233   34556667789999999999999                9999999999999999


Q ss_pred             CCEEEEecccccccCCCCC-CccccCcccccccccc--ccCCcceeeh---hHHHHHcCCCCCCCCCCC
Q psy6542         165 GHVRISDLGLACDFSKKKP-HASVESDCILHGYIKK--LGGPFVSAWQ---TRYAKLFPNRLELHPESG  227 (334)
Q Consensus       165 ~~vkl~DFGla~~~~~~~~-~~~~~t~~~~~~~v~~--~~~~~~~~w~---~~~~~l~~~~~~~~~~~~  227 (334)
                      +.+|++|||+++....... ....+|+.|++||+..  ..++.+|+|+   ++|+++. +.+||.+.+.
T Consensus       156 ~~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~-g~~pF~~~~~  223 (355)
T d2b1pa1         156 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVR-HKILFPGRDY  223 (355)
T ss_dssp             CCEEECCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHH-SSCSSCCSSH
T ss_pred             cceeeechhhhhccccccccccccccccccChhhhcCCCCCCCcccccccchHHHHhh-CCCCCCCCCH
Confidence            9999999999987766543 4457899999999843  3355677777   5566655 5678877653

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.7e-26  Score=211.98  Aligned_cols=194  Identities=14%  Similarity=0.098  Sum_probs=135.4

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccc---cccceeeEEEEeec--CCeEEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKC---VLLFKMNLYKVTSE--PNSHYI   86 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~---~~~~~v~~~~~~~~--~~~~~i   86 (334)
                      +|+...||+|+++.+|+.||||++++...   ..+.+.+|+++++.++|+++...   ....++++++++..  ....++
T Consensus        23 ~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~---~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~   99 (362)
T d1q8ya_          23 WGHFSTVWLAKDMVNNTHVAMKIVRGDKV---YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHV   99 (362)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEECSCHH---HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEE
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEecccc---chHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceee
Confidence            57788999999999999999999986432   33466789999999887654221   12344999888763  466778


Q ss_pred             EEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhhhhhcCCCCcEEeeCCCCCceeeCCCC
Q psy6542          87 IGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHS-ALNKNPLIAIFLTLSVPCLHFRDLKPANILLDEHG  165 (334)
Q Consensus        87 vmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~~~~~~~~~~~~~~~~~iiHrDlKp~NiLl~~~~  165 (334)
                      +|+++.++...................+..++.|++.||.|||+ .+                |+||||||+|||++.++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~----------------IvHrDlKp~NIll~~~~  163 (362)
T d1q8ya_         100 VMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG----------------IIHTDIKPENVLMEIVD  163 (362)
T ss_dssp             EEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC----------------EECSCCSGGGEEEEEEE
T ss_pred             eeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcC----------------cccccCChhHeeeeccC
Confidence            88776665211111111122222445566777899999999997 87                99999999999998765


Q ss_pred             C------EEEEecccccccCCCCCCccccCcccccccccc-c-cCCcceeeh---hHHHHHcCCCCCCCCCC
Q psy6542         166 H------VRISDLGLACDFSKKKPHASVESDCILHGYIKK-L-GGPFVSAWQ---TRYAKLFPNRLELHPES  226 (334)
Q Consensus       166 ~------vkl~DFGla~~~~~~~~~~~~~t~~~~~~~v~~-~-~~~~~~~w~---~~~~~l~~~~~~~~~~~  226 (334)
                      .      ++++|||.+...... .....||+.|++||+.. . .++.+|+|+   ++++++. +..||.+.+
T Consensus       164 ~~~~~~~~kl~dfg~s~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pF~~~~  233 (362)
T d1q8ya_         164 SPENLIQIKIADLGNACWYDEH-YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT-GDFLFEPDE  233 (362)
T ss_dssp             TTTTEEEEEECCCTTCEETTBC-CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHH-SSCCC----
T ss_pred             cccccceeeEeecccccccccc-cccccccccccChhhccccCCCccccccchHHHHHHHHH-CCCCCCCCc
Confidence            4      999999999866544 34567899999999843 2 345677777   4555554 666776654

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.86  E-value=2.7e-22  Score=169.60  Aligned_cols=131  Identities=11%  Similarity=-0.001  Sum_probs=97.5

Q ss_pred             CCCceEEEeceeCCCCCcEEEEEeeCCCc----------------chHHhhhHHHHHHHHHhcCCCCcccccccceeeEE
Q psy6542          12 RVSKWRVKPPSLKPLGFPIQIGMLRHRPH----------------ESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLY   75 (334)
Q Consensus        12 ~~~~~~V~~a~~~~~~~~vAIK~l~~~~~----------------~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~   75 (334)
                      +|+...||+|.+. +|+.||||+++....                ..........|...+..+.|.++        +..+
T Consensus        10 ~G~~g~Vy~a~~~-~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v--------~~~~   80 (191)
T d1zara2          10 EGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAV--------PKVY   80 (191)
T ss_dssp             ECSSEEEEEEEET-TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSS--------CCEE
T ss_pred             eCcceEEEEEECC-CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCc--------ceEE
Confidence            4788999999985 589999999864321                11122345568899999999999        8887


Q ss_pred             EEeecCCeEEEEEEccCCChhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhhcCCCCcEEeeCCC
Q psy6542          76 KVTSEPNSHYIIGVRQSGPKDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNPLIAIFLTLSVPCLHFRDLK  155 (334)
Q Consensus        76 ~~~~~~~~~~ivmEy~~g~l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~~~~~~~~~~~~~iiHrDlK  155 (334)
                      ++..    .+++|||++++..    .   .+.....   ..++.|++.+|.|||+++                |+|||||
T Consensus        81 ~~~~----~~lvme~~~~~~~----~---~l~~~~~---~~i~~ql~~~l~~lH~~g----------------iiHrDiK  130 (191)
T d1zara2          81 AWEG----NAVLMELIDAKEL----Y---RVRVENP---DEVLDMILEEVAKFYHRG----------------IVHGDLS  130 (191)
T ss_dssp             EEET----TEEEEECCCCEEG----G---GCCCSCH---HHHHHHHHHHHHHHHHTT----------------EECSCCS
T ss_pred             EecC----CEEEEEeeccccc----c---chhhHHH---HHHHHHHHHHHHHHhhCC----------------EEEccCC
Confidence            6542    3799999999831    1   1111122   245569999999999999                9999999


Q ss_pred             CCceeeCCCCCEEEEecccccccCCCC
Q psy6542         156 PANILLDEHGHVRISDLGLACDFSKKK  182 (334)
Q Consensus       156 p~NiLl~~~~~vkl~DFGla~~~~~~~  182 (334)
                      |+|||+++++ ++|+|||+|+......
T Consensus       131 P~NILv~~~~-~~liDFG~a~~~~~~~  156 (191)
T d1zara2         131 QYNVLVSEEG-IWIIDFPQSVEVGEEG  156 (191)
T ss_dssp             TTSEEEETTE-EEECCCTTCEETTSTT
T ss_pred             hhheeeeCCC-EEEEECCCcccCCCCC
Confidence            9999998654 8999999998766543

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.22  E-value=1.1e-05  Score=68.71  Aligned_cols=140  Identities=13%  Similarity=0.053  Sum_probs=87.3

Q ss_pred             eEEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcC-CCCcccccccceeeEEEEeecCCeEEEEEEccCCC
Q psy6542          16 WRVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLR-NEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP   94 (334)
Q Consensus        16 ~~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~-h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~   94 (334)
                      =+||+..  ..++.+.+|........  ....+.+|..++..+. +-.+        .+++.+...++..|+||++++|.
T Consensus        28 ~~v~rv~--~~~~~~vlk~~~~~~~~--~~~~~~~E~~~l~~l~~~vpv--------P~vl~~~~~~~~~~lv~~~l~G~   95 (263)
T d1j7la_          28 AKVYKLV--GENENLYLKMTDSRYKG--TTYDVEREKDMMLWLEGKLPV--------PKVLHFERHDGWSNLLMSEADGV   95 (263)
T ss_dssp             SEEEEEE--CSSCEEEEEEECGGGTT--STTCHHHHHHHHHHHTTTSCC--------CCEEEEEEETTEEEEEEECCSSE
T ss_pred             CcEEEEE--eCCCeEEEEEcCCCccc--chhhHHHHHHHHHHHhccCCC--------CcEEEEEecCCceEEEEEecccc
Confidence            3677654  34667788877643321  2235667999888875 3234        67788888888999999999998


Q ss_pred             -hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCC-c------------------------------------
Q psy6542          95 -KDQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKN-P------------------------------------  136 (334)
Q Consensus        95 -l~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~-~------------------------------------  136 (334)
                       .......      ......+   +.++...+..||+..... |                                    
T Consensus        96 ~~~~~~~~------~~~~~~~---~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (263)
T d1j7la_          96 LCSEEYED------EQSPEKI---IELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKD  166 (263)
T ss_dssp             EHHHHTTT------CSCHHHH---HHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSS
T ss_pred             cccccccc------cccHHHH---HHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchH
Confidence             3111111      1112222   236777777788643221 0                                    


Q ss_pred             ---hhh-h--hhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         137 ---LIA-I--FLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       137 ---~~~-~--~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                         +.. +  -.....++++|+|+.|.||++++++.+.|+||+.+.
T Consensus       167 ~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         167 PRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             HHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence               000 0  011234558899999999999877666799999875

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.19  E-value=5.2e-06  Score=70.59  Aligned_cols=136  Identities=9%  Similarity=-0.056  Sum_probs=81.8

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC-h
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP-K   95 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~-l   95 (334)
                      .||+... .++..+.+|.-.....     ..+..|..+++.+....+      -+.+++.+..+++..++||++++|. +
T Consensus        26 ~v~r~~~-~~~~~~vlK~~~~~~~-----~~l~~E~~~l~~L~~~gv------pvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          26 AVFRLSA-QGRPVLFVKTDLSGAL-----NELQDEAARLSWLATTGV------PCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             EEEEEEC-TTSCCEEEEEECSCTT-----SCHHHHHHHHHHHHTTTC------CBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             eEEEEEe-CCCCEEEEEeCCccCH-----hHHHHHHHHHHHHHhcCC------CCCceeeecccccceEEEEEeeecccc
Confidence            4555543 3466788897654332     345668888888765443      1267788888888999999999886 2


Q ss_pred             hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---------------------------------------
Q psy6542          96 DQISRSKINRYHKKLRKCFIRRTVQLLEPVHTCHSALNKNP---------------------------------------  136 (334)
Q Consensus        96 ~~l~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~~~~~---------------------------------------  136 (334)
                      ...      ..   ......   .++...|.-||+....+.                                       
T Consensus        94 ~~~------~~---~~~~~~---~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (255)
T d1nd4a_          94 LSS------HL---APAEKV---SIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAEL  161 (255)
T ss_dssp             TTS------CC---CHHHHH---HHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHH
T ss_pred             ccc------cc---cHHHHH---HHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHH
Confidence            110      00   011111   245555555564221100                                       


Q ss_pred             hhhh---hhcCCCCcEEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         137 LIAI---FLTLSVPCLHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       137 ~~~~---~~~~~~~~iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      +-.+   --....+.++|+|+.|.|||++.++.+.|+||+.+.
T Consensus       162 ~~~l~~~~~~~~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         162 FARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             HHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHhCCccCCceEEeCCCCCcceEEeCCceEEEEEchhcc
Confidence            0000   011234558999999999999987667899999875

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00043  Score=60.97  Aligned_cols=73  Identities=11%  Similarity=-0.041  Sum_probs=44.5

Q ss_pred             EEEeceeCCCCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEEEEEccCCC
Q psy6542          17 RVKPPSLKPLGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYIIGVRQSGP   94 (334)
Q Consensus        17 ~V~~a~~~~~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~ivmEy~~g~   94 (334)
                      +||.+... +|..|++|+-+.....   ...+..|...+..|....+. +..+....--..+..++..+.+++++.|.
T Consensus        37 ~vy~v~~~-dg~~~VlK~~rp~~~s---~~~i~~E~~~l~~L~~~gip-v~~p~~~~g~~~~~~~~~~~~l~~~~~G~  109 (325)
T d1zyla1          37 RVYQFQDE-DRRRFVVKFYRPERWT---ADQILEEHQFALQLVNDEVP-VAAPVAFNGQTLLNHQGFYFAVFPSVGGR  109 (325)
T ss_dssp             EEEEECCT-TCCCEEEEEECTTTSC---HHHHHHHHHHHHHHHHTTCS-BCCCCCBTTBSCEEETTEEEEEEECCCCE
T ss_pred             eeEEEEcC-CCCEEEEEEeCCCCCC---HHHHHHHHHHHHHHHhcCCC-CCCceecCCCeeeeeeeEEEEEEeecCCc
Confidence            68888764 5889999998865442   23456688888887654431 11110000011223456788999999885

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.07  E-value=0.00091  Score=60.45  Aligned_cols=70  Identities=4%  Similarity=-0.229  Sum_probs=40.1

Q ss_pred             ceEEEeceeCCCCCcEEEEEeeCC----Cc-chHHhhhHHHHHHHHHhcC-C--CCcccccccceeeEEEEeecCCeEEE
Q psy6542          15 KWRVKPPSLKPLGFPIQIGMLRHR----PH-ESRVAKWRPYIQEIFNHLR-N--EPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        15 ~~~V~~a~~~~~~~~vAIK~l~~~----~~-~~~~~~~~~~E~~il~~l~-h--~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      .=.||++.+..+++.|.||.-...    .. -.....+...|.++|+.+. +  ..+        .++|.+.  ....++
T Consensus        39 ~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~v--------P~v~~~d--~~~~~l  108 (392)
T d2pula1          39 LNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLV--------PRVFYSD--TEMAVT  108 (392)
T ss_dssp             SEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGS--------CCEEEEE--TTTTEE
T ss_pred             eEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCc--------ceEEEEc--CCCCEE
Confidence            346888888888889999965421    11 0111224456888887763 2  223        6666543  445578


Q ss_pred             EEEccCCC
Q psy6542          87 IGVRQSGP   94 (334)
Q Consensus        87 vmEy~~g~   94 (334)
                      |||++++.
T Consensus       109 vmE~L~~~  116 (392)
T d2pula1         109 VMEDLSHL  116 (392)
T ss_dssp             EECCCTTS
T ss_pred             EEeccCCc
Confidence            99999876

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.01  E-value=0.018  Score=51.37  Aligned_cols=66  Identities=11%  Similarity=-0.060  Sum_probs=40.5

Q ss_pred             CceEEEeceeCC-------CCCcEEEEEeeCCCcchHHhhhHHHHHHHHHhcCCCCcccccccceeeEEEEeecCCeEEE
Q psy6542          14 SKWRVKPPSLKP-------LGFPIQIGMLRHRPHESRVAKWRPYIQEIFNHLRNEPFKKCVLLFKMNLYKVTSEPNSHYI   86 (334)
Q Consensus        14 ~~~~V~~a~~~~-------~~~~vAIK~l~~~~~~~~~~~~~~~E~~il~~l~h~~i~~~~~~~~v~~~~~~~~~~~~~i   86 (334)
                      -.=.+|++....       .+..|.+++.-....    .....+|..+++.+.-.++       ..++++++.+    .+
T Consensus        54 ltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~----~idr~~E~~i~~~ls~~gl-------~Pkll~~~~~----g~  118 (395)
T d1nw1a_          54 MSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET----ESHLVAESVIFTLLSERHL-------GPKLYGIFSG----GR  118 (395)
T ss_dssp             TTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC----HHHHHHHHHHHHHHHHTTS-------SSCEEEEETT----EE
T ss_pred             cccceEEEEeCCCCccccCCCCcEEEEecCCcch----hhHHHHHHHHHHHHHhCCC-------CCeEEEEcCC----ce
Confidence            344667666543       234566666542221    1234469999998875555       2578877743    68


Q ss_pred             EEEccCCC
Q psy6542          87 IGVRQSGP   94 (334)
Q Consensus        87 vmEy~~g~   94 (334)
                      ||||++|.
T Consensus       119 I~efi~g~  126 (395)
T d1nw1a_         119 LEEYIPSR  126 (395)
T ss_dssp             EECCCCEE
T ss_pred             EEEEeccc
Confidence            99999886

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.43  E-value=0.01  Score=51.11  Aligned_cols=28  Identities=21%  Similarity=0.301  Sum_probs=25.7

Q ss_pred             EEeeCCCCCceeeCCCCCEEEEeccccc
Q psy6542         149 LHFRDLKPANILLDEHGHVRISDLGLAC  176 (334)
Q Consensus       149 iiHrDlKp~NiLl~~~~~vkl~DFGla~  176 (334)
                      +||+|+.+.|++++.+....|+||+.|.
T Consensus       185 iIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         185 VIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccCCcchhhhhcccccceeEecccccc
Confidence            8999999999999988777999999874