Psyllid ID: psy654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MSQMSTHSDTNHIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSEDSGSTVTLHEIVDVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTHDKIFFRTTQNALVGNVI
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEEEEEEEEcccccccccEEEEEEEEEcccEEEEEccHHHHHHHHHHHHccccEEEEEcccccEEEEEcccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccEEEEEEEEEEccccEEEEEcccccccccccccccccHHHHccccEEEcccEEEEcccccEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccEcccccEEEEEEEEEEEEEEEEEEcccccccccEEEEEEEEccccEEEEccHHHHHHHHHccEEEccEEEEEcccccEEEccccccHccHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEEHcHHHHHcccHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEcccHHcEcccc
Coil and Loop (DISEMBL)
msqmsthsdtnhieetemIEGEVVEIQierpatglgskvgkltmkttemETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRLGRsftrardydatgaqtrntlpsrsrhvsswgVQKDVVQSIsnniicpvvprpessrsedsgstvtLHEIvdvqagdvitidkatgkiTRLGRsftrardydatgaqtrqcnlneivptthdkIFFRTTQNALVGNVI
Flexible Loop (DISEMBL)
msqmsthsdtnhieeteMIEGEVVEIQIerpatglgskvgkltmktTEMETSYDLGAKMIEAIGkekvqagdvitidkatgkitrlgrsftrardydatgaqtrntlpsrsrhvsswgVQKDVVQSISNNIICPVVPRPESSRSEDSGSTVTlheivdvqagdvitidkatgkitrlgrsftrardydatgaqtrqcnlneivptthdkiffrttqnalvgnvi
Low Complexity Region (SEG)
MSQMSTHSDTNHieetemiegevveiQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSEDSGSTVTLHEIVDVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTHDKIFFRTTQNALVGNVI
Disordered region (IsUnstruct)
**********************VVEIQI**********************TSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRLGRSFTRA**********************SWGVQKDVVQSISNNIICPVV**************VTLHEIVDVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTHDKIFFRTTQNALV****
Disordered Region (DISOPRED)
***********HIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRNT***************DVVQSISNNIICPVVP****************HEIVDVQAGDVI***************FTRARDYDATGAQTRQCNLNEIVPTTHDKIFFRTTQNALVGNVI
Disordered Region (DISEMBL)
***********HIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRN************GVQKDVVQSISNNIICPVVP*************VTLHEIVDVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTHDKIFFRTTQNALVGNVI
Disordered Region (DISPRO)
****STHSDTNHIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRLGRSFT*ARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSEDSGSTVTLHEIVDVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTHDKIFFRTTQNALVGNVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQMSTHSDTNHIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSEDSGSTVTLHEIVDVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTHDKIFFRTTQNALVGNVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
P83571	463	RuvB-like 2 OS=Danio reri	yes	N/A	0.397	0.192	0.835	7e-38
Q9DE27	462	RuvB-like 2 OS=Xenopus la	N/A	N/A	0.397	0.192	0.824	1e-37
Q9WTM5	463	RuvB-like 2 OS=Mus muscul	yes	N/A	0.397	0.192	0.835	1e-37
Q9Y230	463	RuvB-like 2 OS=Homo sapie	yes	N/A	0.397	0.192	0.835	1e-37
Q2TBU9	463	RuvB-like 2 OS=Bos taurus	yes	N/A	0.397	0.192	0.835	1e-37
Q29DI0	480	RuvB-like helicase 2 OS=D	yes	N/A	0.397	0.185	0.824	3e-37
Q9V3K3	481	RuvB-like helicase 2 OS=D	yes	N/A	0.397	0.185	0.813	6e-37
Q16TA2	465	RuvB-like helicase 2 OS=A	N/A	N/A	0.397	0.191	0.791	3e-36
Q6BSB8	480	RuvB-like helicase 2 OS=D	yes	N/A	0.401	0.187	0.747	5e-31
Q5AGZ9	498	RuvB-like helicase 2 OS=C	N/A	N/A	0.401	0.180	0.747	1e-30

>sp|P83571|RUVB2_DANRE RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1

 Score =  157 bits (396), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 76/91 (83%), Positives = 86/91 (94%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQI+RPATG G+KVGKLT+KTTEMET YDLG KMIE++ KE+VQAGDV
Sbjct: 133 EETEIIEGEVVEIQIDRPATGTGAKVGKLTLKTTEMETIYDLGTKMIESLSKERVQAGDV 192

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKATGKI++LGRSFTRARDYDA GAQT+
Sbjct: 193 ITIDKATGKISKLGRSFTRARDYDAMGAQTQ 223

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q9DE27|RUVB2_XENLA RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/91 (82%), Positives = 86/91 (94%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVE+QI+RPATG G+KVGKLT+KTTEMET YDLG KMIE++ KEKVQAGDV
Sbjct: 132 EETEIIEGEVVEVQIDRPATGTGAKVGKLTLKTTEMETIYDLGTKMIESLTKEKVQAGDV 191

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKATGKIT+LGR+FTRARDYDA G+QT+
Sbjct: 192 ITIDKATGKITKLGRAFTRARDYDAMGSQTK 222

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9WTM5|RUVB2_MOUSE RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=2 SV=3

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/91 (83%), Positives = 86/91 (94%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDV
Sbjct: 133 EETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 192

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKATGKI++LGRSFTRARDYDA G+QT+
Sbjct: 193 ITIDKATGKISKLGRSFTRARDYDAMGSQTK 223

Plays an essential role in oncogenic transformation by MYC and also modulates transcriptional activation by the LEF1/TCF1-CTNNB1 complex. May also inhibit the transcriptional activity of ATF2.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/91 (83%), Positives = 86/91 (94%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDV
Sbjct: 133 EETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 192

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKATGKI++LGRSFTRARDYDA G+QT+
Sbjct: 193 ITIDKATGKISKLGRSFTRARDYDAMGSQTK 223

Plays an essential role in oncogenic transformation by MYC and also modulates transcriptional activation by the LEF1/TCF1-CTNNB1 complex. May also inhibit the transcriptional activity of ATF2.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q2TBU9|RUVB2_BOVIN RuvB-like 2 OS=Bos taurus GN=RUVBL2 PE=2 SV=3

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/91 (83%), Positives = 86/91 (94%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDV
Sbjct: 133 EETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 192

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKATGKI++LGRSFTRARDYDA G+QT+
Sbjct: 193 ITIDKATGKISKLGRSFTRARDYDAMGSQTK 223

Plays an essential role in oncogenic transformation by MYC and also modulates transcriptional activation by the LEF1/TCF1-CTNNB1 complex. May also inhibit the transcriptional activity of ATF2.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q29DI0|RUVB2_DROPS RuvB-like helicase 2 OS=Drosophila pseudoobscura pseudoobscura GN=rept PE=3 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/91 (82%), Positives = 84/91 (92%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQIERPATG G KVGK+T+KTTEMET+YDLG K+IE   KEK+QAGDV
Sbjct: 129 EETEIIEGEVVEIQIERPATGTGQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDV 188

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKA+GK+ +LGRSFTRARDYDATGAQTR
Sbjct: 189 ITIDKASGKVNKLGRSFTRARDYDATGAQTR 219

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9V3K3|RUVB2_DROME RuvB-like helicase 2 OS=Drosophila melanogaster GN=rept PE=1 SV=1

 Score =  154 bits (388), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/91 (81%), Positives = 84/91 (92%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQIERPA+G G KVGK+T+KTTEMET+YDLG K+IE   KEK+QAGDV
Sbjct: 129 EETEIIEGEVVEIQIERPASGTGQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDV 188

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKA+GK+ +LGRSFTRARDYDATGAQTR
Sbjct: 189 ITIDKASGKVNKLGRSFTRARDYDATGAQTR 219

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q16TA2|RUVB2_AEDAE RuvB-like helicase 2 OS=Aedes aegypti GN=rept PE=3 SV=1

 Score =  151 bits (382), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 85/91 (93%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQI+RPA+G G KVGK+T+KTT+MET+YDLG K+IE   KEK+QAGDV
Sbjct: 129 EETEIIEGEVVEIQIDRPASGTGQKVGKVTIKTTDMETNYDLGNKIIECFMKEKIQAGDV 188

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKA+GK+++LGRSFTRARDYDATGAQTR
Sbjct: 189 ITIDKASGKVSKLGRSFTRARDYDATGAQTR 219

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Aedes aegypti (taxid: 7159)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q6BSB8|RUVB2_DEBHA RuvB-like helicase 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RVB2 PE=3 SV=1

 Score =  134 bits (337), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 79/91 (86%), Gaps = 1/91 (1%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETEMIEGEVVEIQI+R  TG G K GKLT+KTT+MET Y+LG KMIE + KEKV AGDV
Sbjct: 132 EETEMIEGEVVEIQIDRSITG-GHKQGKLTIKTTDMETIYELGNKMIEGLTKEKVLAGDV 190

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           I+IDKA+GKIT+LG+SFTRARDYDA G +T+
Sbjct: 191 ISIDKASGKITKLGKSFTRARDYDAMGPETK 221

DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes and is involved in DNA repair. Also involved in pre-rRNA processing.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q5AGZ9|RUVB2_CANAL RuvB-like helicase 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RVB2 PE=3 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 79/91 (86%), Gaps = 1/91 (1%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQI+R  TG G K GKLT+KTT+MET Y+LG KMIE + KEKV AGDV
Sbjct: 135 EETEIIEGEVVEIQIDRTITG-GHKQGKLTIKTTDMETIYELGNKMIEGLTKEKVLAGDV 193

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           I+IDKA+GKIT+LGRSFTRARDYDA G +T+
Sbjct: 194 ISIDKASGKITKLGRSFTRARDYDAMGPETK 224

DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes and is involved in DNA repair. Also involved in pre-rRNA processing.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
194376266	255	unnamed protein product [Homo sapiens]	0.549	0.482	0.661	4e-38
443730949	289	hypothetical protein CAPTEDRAFT_221846 [	0.397	0.307	0.857	5e-37
380014308	462	PREDICTED: LOW QUALITY PROTEIN: ruvB-lik	0.397	0.192	0.846	7e-37
340722677	462	PREDICTED: ruvB-like 2-like [Bombus terr	0.397	0.192	0.846	8e-37
328506975	463	RuvB-like protein 2 [Penaeus monodon]	0.513	0.248	0.629	8e-37
383849742	462	PREDICTED: ruvB-like 2-like [Megachile r	0.397	0.192	0.846	9e-37
110763884	462	PREDICTED: RuvB-like 2 [Apis mellifera]	0.397	0.192	0.846	1e-36
332024503	706	RuvB-like 2 [Acromyrmex echinatior]	0.397	0.126	0.846	1e-36
322789185	468	hypothetical protein SINV_15852 [Solenop	0.700	0.335	0.517	1e-36
405962568	475	RuvB-like 2 [Crassostrea gigas]	0.513	0.242	0.622	1e-36

>gi|194376266|dbj|BAG62892.1| unnamed protein product [Homo sapiens]

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 98/124 (79%), Gaps = 1/124 (0%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDV
Sbjct: 133 EETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 192

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIIC 133
           ITIDKATGK ++LGRSFTRARDYDA G+Q R  LP   R    WGV    +  +++ +  
Sbjct: 193 ITIDKATGKTSKLGRSFTRARDYDAMGSQVRPGLPGSPRP-QHWGVFISSITPLTHGVWI 251

Query: 134 PVVP 137
            ++P
Sbjct: 252 FLLP 255

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443730949|gb|ELU16243.1| hypothetical protein CAPTEDRAFT_221846 [Capitella teleta]

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 86/91 (94%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQI+RPATG G+KVGKLT+KTTEMET YDLG KMIE++ KEKVQAGD+
Sbjct: 133 EETEIIEGEVVEIQIDRPATGTGAKVGKLTLKTTEMETIYDLGQKMIESLTKEKVQAGDI 192

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKATGKITRLGRSFTRARDYDA G+QTR
Sbjct: 193 ITIDKATGKITRLGRSFTRARDYDAMGSQTR 223

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|380014308|ref|XP_003691181.1| PREDICTED: LOW QUALITY PROTEIN: ruvB-like 2-like [Apis florea]

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 87/91 (95%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQ++RPATG+G+KVGKLT+KTTEMET YDLG KMI+++ KEKVQAGDV
Sbjct: 132 EETEIIEGEVVEIQVDRPATGVGAKVGKLTLKTTEMETIYDLGXKMIDSLMKEKVQAGDV 191

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKATGKI RLGRSFTRARDYDATG+QTR
Sbjct: 192 ITIDKATGKINRLGRSFTRARDYDATGSQTR 222

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722677|ref|XP_003399730.1| PREDICTED: ruvB-like 2-like [Bombus terrestris] gi|350424319|ref|XP_003493756.1| PREDICTED: ruvB-like 2-like [Bombus impatiens]

 Score =  159 bits (402), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 87/91 (95%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQ++RPATG+G+KVGKLT+KTTEMET YDLG KMI+++ KEKVQAGDV
Sbjct: 132 EETEIIEGEVVEIQVDRPATGIGAKVGKLTLKTTEMETIYDLGNKMIDSLMKEKVQAGDV 191

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKATGKI RLGRSFTRARDYDATG+QTR
Sbjct: 192 ITIDKATGKINRLGRSFTRARDYDATGSQTR 222

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328506975|gb|AEB21640.1| RuvB-like protein 2 [Penaeus monodon]

 Score =  159 bits (402), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/143 (62%), Positives = 101/143 (70%), Gaps = 28/143 (19%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVE+QI+RPATG G+KVGKLT+KTTEMET YDLG K+IEA+ KEKVQAGDV
Sbjct: 130 EETEIIEGEVVEVQIDRPATGTGAKVGKLTLKTTEMETIYDLGNKLIEALTKEKVQAGDV 189

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIIC 133
           ITIDKATGKIT+LGRSFTRARDYDATG QTR                   VQ       C
Sbjct: 190 ITIDKATGKITKLGRSFTRARDYDATGPQTR------------------FVQ-------C 224

Query: 134 PVVPRPESSRSEDSGSTVTLHEI 156
              P  E  + ++   TVTLHEI
Sbjct: 225 ---PEGELQKRKEVVHTVTLHEI 244

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849742|ref|XP_003700496.1| PREDICTED: ruvB-like 2-like [Megachile rotundata]

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 87/91 (95%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQ++RPATG+G+KVGKLT+KTTEMET YDLG KMI+++ KEKVQAGDV
Sbjct: 132 EETEIIEGEVVEIQVDRPATGVGAKVGKLTLKTTEMETIYDLGNKMIDSLMKEKVQAGDV 191

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKATGKI RLGRSFTRARDYDATG+QTR
Sbjct: 192 ITIDKATGKINRLGRSFTRARDYDATGSQTR 222

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110763884|ref|XP_001122537.1| PREDICTED: RuvB-like 2 [Apis mellifera]

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 87/91 (95%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQ++RPATG+G+KVGKLT+KTTEMET YDLG KMI+++ KEKVQAGDV
Sbjct: 132 EETEIIEGEVVEIQVDRPATGVGAKVGKLTLKTTEMETIYDLGNKMIDSLMKEKVQAGDV 191

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKATGKI RLGRSFTRARDYDATG+QTR
Sbjct: 192 ITIDKATGKINRLGRSFTRARDYDATGSQTR 222

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024503|gb|EGI64701.1| RuvB-like 2 [Acromyrmex echinatior]

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQ++RPATG+G KVGKLT+KTTEMET YDLG KMI+ + KEKVQAGDV
Sbjct: 178 EETEIIEGEVVEIQVDRPATGIGVKVGKLTLKTTEMETIYDLGNKMIDCLMKEKVQAGDV 237

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           ITIDKATGKI RLGRSFTRARDYDATG+QTR
Sbjct: 238 ITIDKATGKINRLGRSFTRARDYDATGSQTR 268

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789185|gb|EFZ14571.1| hypothetical protein SINV_15852 [Solenopsis invicta]

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/195 (51%), Positives = 121/195 (62%), Gaps = 38/195 (19%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQ++RPATG+G KVGKLT+KTTEMET YDLG KMI+ + KEKVQAGDV
Sbjct: 134 EETEIIEGEVVEIQVDRPATGIGVKVGKLTLKTTEMETIYDLGNKMIDCLMKEKVQAGDV 193

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIIC 133
           ITIDKATGKI RLGRSFTRARDYDATG+QTR                   VQ       C
Sbjct: 194 ITIDKATGKINRLGRSFTRARDYDATGSQTR------------------FVQ-------C 228

Query: 134 PVVPRPESSRSEDSGSTVTLHEIVDVQA---GDVITIDKATGKITRLGRSFTRARD-YDA 189
              P  E  + ++   TVTLHE+  + +   G +      TG+I       +  RD  +A
Sbjct: 229 ---PEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIK------SEVRDQINA 279

Query: 190 TGAQTRQCNLNEIVP 204
             A+ R+    EIVP
Sbjct: 280 KVAEWREEGKAEIVP 294

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405962568|gb|EKC28232.1| RuvB-like 2 [Crassostrea gigas]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/143 (62%), Positives = 101/143 (70%), Gaps = 28/143 (19%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQI+RPATG G+KVGKLT+KTTEMET YDLG KMIE++ KEKVQAGD+
Sbjct: 143 EETEIIEGEVVEIQIDRPATGTGAKVGKLTLKTTEMETIYDLGQKMIESLTKEKVQAGDI 202

Query: 74  ITIDKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIIC 133
           ITIDKATGKIT+LGRSFTRARDYDA GAQT+                   VQ       C
Sbjct: 203 ITIDKATGKITKLGRSFTRARDYDAMGAQTK------------------FVQ-------C 237

Query: 134 PVVPRPESSRSEDSGSTVTLHEI 156
              P  E  + ++   TVTLHEI
Sbjct: 238 ---PEGELQKRKEVVHTVTLHEI 257

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
UNIPROTKB|Q29DI0	480	rept "RuvB-like helicase 2" [D	0.348	0.162	0.807	2.3e-32
FB|FBgn0040075	481	rept "reptin" [Drosophila mela	0.348	0.162	0.794	8.2e-32
UNIPROTKB|Q16TA2	465	rept "RuvB-like helicase 2" [A	0.348	0.167	0.769	2.3e-31
ZFIN|ZDB-GENE-030109-1	463	ruvbl2 "RuvB-like 2 (E. coli)"	0.638	0.308	0.523	2.3e-30
UNIPROTKB|Q9DE27	462	ruvbl2 "RuvB-like 2" [Xenopus	0.638	0.309	0.523	3e-30
UNIPROTKB|F1MSD2	463	RUVBL2 "Uncharacterized protei	0.638	0.308	0.523	3.8e-30
UNIPROTKB|Q2TBU9	463	RUVBL2 "RuvB-like 2" [Bos taur	0.638	0.308	0.523	3.8e-30
UNIPROTKB|E2RTC3	463	RUVBL2 "Uncharacterized protei	0.638	0.308	0.523	3.8e-30
UNIPROTKB|F1PAP9	462	RUVBL2 "Uncharacterized protei	0.638	0.309	0.523	3.8e-30
UNIPROTKB|B3KQ59	418	RUVBL2 "cDNA FLJ32936 fis, clo	0.638	0.342	0.523	3.8e-30

UNIPROTKB|Q29DI0 rept "RuvB-like helicase 2" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 328 (120.5 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
 Identities = 63/78 (80%), Positives = 71/78 (91%)

Query:    27 QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
             QIERPATG G KVGK+T+KTTEMET+YDLG K+IE   KEK+QAGDVITIDKA+GK+ +L
Sbjct:   142 QIERPATGTGQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNKL 201

Query:    87 GRSFTRARDYDATGAQTR 104
             GRSFTRARDYDATGAQTR
Sbjct:   202 GRSFTRARDYDATGAQTR 219

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0016573 "histone acetylation" evidence=ISS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0031011 "Ino80 complex" evidence=ISS

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISS

GO:0042127 "regulation of cell proliferation" evidence=ISS

GO:0043486 "histone exchange" evidence=ISS

GO:0004402 "histone acetyltransferase activity" evidence=ISS

FB|FBgn0040075 rept "reptin" [Drosophila melanogaster (taxid:7227)]

 Score = 324 (119.1 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
 Identities = 62/78 (79%), Positives = 71/78 (91%)

Query:    27 QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
             QIERPA+G G KVGK+T+KTTEMET+YDLG K+IE   KEK+QAGDVITIDKA+GK+ +L
Sbjct:   142 QIERPASGTGQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNKL 201

Query:    87 GRSFTRARDYDATGAQTR 104
             GRSFTRARDYDATGAQTR
Sbjct:   202 GRSFTRARDYDATGAQTR 219

GO:0003678 "DNA helicase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IPI

GO:0031011 "Ino80 complex" evidence=IDA

GO:0006342 "chromatin silencing" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0035102 "PRC1 complex" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q16TA2 rept "RuvB-like helicase 2" [Aedes aegypti (taxid:7159)]

 Score = 318 (117.0 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 60/78 (76%), Positives = 72/78 (92%)

Query:    27 QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
             QI+RPA+G G KVGK+T+KTT+MET+YDLG K+IE   KEK+QAGDVITIDKA+GK+++L
Sbjct:   142 QIDRPASGTGQKVGKVTIKTTDMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVSKL 201

Query:    87 GRSFTRARDYDATGAQTR 104
             GRSFTRARDYDATGAQTR
Sbjct:   202 GRSFTRARDYDATGAQTR 219

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0016573 "histone acetylation" evidence=ISS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0031011 "Ino80 complex" evidence=ISS

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISS

GO:0042127 "regulation of cell proliferation" evidence=ISS

GO:0043486 "histone exchange" evidence=ISS

GO:0004402 "histone acetyltransferase activity" evidence=ISS

ZFIN|ZDB-GENE-030109-1 ruvbl2 "RuvB-like 2 (E. coli)" [Danio rerio (taxid:7955)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 77/147 (52%), Positives = 100/147 (68%)

Query:    27 QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
             QI+RPATG G+KVGKLT+KTTEMET YDLG KMIE++ KE+VQAGDVITIDKATGKI++L
Sbjct:   146 QIDRPATGTGAKVGKLTLKTTEMETIYDLGTKMIESLSKERVQAGDVITIDKATGKISKL 205

Query:    87 GRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSED 146
             GRSFTRARDYDA GAQT+  +      +     +K+VV ++S + I  +  R +   +  
Sbjct:   206 GRSFTRARDYDAMGAQTQ-FVQCPEGELQK---RKEVVHTVSLHEIDVINSRTQGFLALF 261

Query:   147 SGSTVTLHEIVDVQAGDVITIDKATGK 173
             SG T  +   V  Q    ++  +  GK
Sbjct:   262 SGDTGEIKSEVREQINAKVSEWREEGK 288

GO:0031011 "Ino80 complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0007507 "heart development" evidence=IMP

GO:0060420 "regulation of heart growth" evidence=IMP

GO:0048565 "digestive tract development" evidence=IMP

GO:0071339 "MLL1 complex" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q9DE27 ruvbl2 "RuvB-like 2" [Xenopus laevis (taxid:8355)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 77/147 (52%), Positives = 99/147 (67%)

Query:    27 QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
             QI+RPATG G+KVGKLT+KTTEMET YDLG KMIE++ KEKVQAGDVITIDKATGKIT+L
Sbjct:   145 QIDRPATGTGAKVGKLTLKTTEMETIYDLGTKMIESLTKEKVQAGDVITIDKATGKITKL 204

Query:    87 GRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSED 146
             GR+FTRARDYDA G+QT+  +      +     +K+VV ++S + I  +  R +   +  
Sbjct:   205 GRAFTRARDYDAMGSQTK-FVQCPDGELQK---RKEVVHTVSLHEIDVINSRTQGFLALF 260

Query:   147 SGSTVTLHEIVDVQAGDVITIDKATGK 173
             SG T  +   V  Q    +   +  GK
Sbjct:   261 SGDTGEIKSEVREQINAKVAEWREEGK 287

GO:0071339 "MLL1 complex" evidence=ISS

UNIPROTKB|F1MSD2 RUVBL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 77/147 (52%), Positives = 99/147 (67%)

Query:    27 QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
             QI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDVITIDKATGKI++L
Sbjct:   146 QIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKL 205

Query:    87 GRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSED 146
             GRSFTRARDYDA G+QT+  +      +     +K+VV ++S + I  +  R +   +  
Sbjct:   206 GRSFTRARDYDAMGSQTK-FVQCPDGELQK---RKEVVHTVSLHEIDVINSRTQGFLALF 261

Query:   147 SGSTVTLHEIVDVQAGDVITIDKATGK 173
             SG T  +   V  Q    +   +  GK
Sbjct:   262 SGDTGEIKSEVREQINAKVAEWREEGK 288

GO:0071339 "MLL1 complex" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

UNIPROTKB|Q2TBU9 RUVBL2 "RuvB-like 2" [Bos taurus (taxid:9913)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 77/147 (52%), Positives = 99/147 (67%)

Query:    27 QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
             QI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDVITIDKATGKI++L
Sbjct:   146 QIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKL 205

Query:    87 GRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSED 146
             GRSFTRARDYDA G+QT+  +      +     +K+VV ++S + I  +  R +   +  
Sbjct:   206 GRSFTRARDYDAMGSQTK-FVQCPDGELQK---RKEVVHTVSLHEIDVINSRTQGFLALF 261

Query:   147 SGSTVTLHEIVDVQAGDVITIDKATGK 173
             SG T  +   V  Q    +   +  GK
Sbjct:   262 SGDTGEIKSEVREQINAKVAEWREEGK 288

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043968 "histone H2A acetylation" evidence=ISS

GO:0043967 "histone H4 acetylation" evidence=ISS

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

UNIPROTKB|E2RTC3 RUVBL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 77/147 (52%), Positives = 99/147 (67%)

Query:    27 QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
             QI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDVITIDKATGKI++L
Sbjct:   146 QIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKL 205

Query:    87 GRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSED 146
             GRSFTRARDYDA G+QT+  +      +     +K+VV ++S + I  +  R +   +  
Sbjct:   206 GRSFTRARDYDAMGSQTK-FVQCPDGELQK---RKEVVHTVSLHEIDVINSRTQGFLALF 261

Query:   147 SGSTVTLHEIVDVQAGDVITIDKATGK 173
             SG T  +   V  Q    +   +  GK
Sbjct:   262 SGDTGEIKSEVREQINAKVAEWREEGK 288

GO:0005524 "ATP binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

UNIPROTKB|F1PAP9 RUVBL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 77/147 (52%), Positives = 99/147 (67%)

Query:    27 QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
             QI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDVITIDKATGKI++L
Sbjct:   146 QIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKL 205

Query:    87 GRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSED 146
             GRSFTRARDYDA G+QT+  +      +     +K+VV ++S + I  +  R +   +  
Sbjct:   206 GRSFTRARDYDAMGSQTK-FVQCPDGELQK---RKEVVHTVSLHEIDVINSRTQGFLALF 261

Query:   147 SGSTVTLHEIVDVQAGDVITIDKATGK 173
             SG T  +   V  Q    +   +  GK
Sbjct:   262 SGDTGEIKSEVREQINAKVAEWREEGK 288

GO:0071339 "MLL1 complex" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

UNIPROTKB|B3KQ59 RUVBL2 "cDNA FLJ32936 fis, clone TESTI2007533, highly similar to RuvB-like 2 (EC 3.6.1.-)" [Homo sapiens (taxid:9606)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 77/147 (52%), Positives = 99/147 (67%)

Query:    27 QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
             QI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDVITIDKATGKI++L
Sbjct:   101 QIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKL 160

Query:    87 GRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSED 146
             GRSFTRARDYDA G+QT+  +      +     +K+VV ++S + I  +  R +   +  
Sbjct:   161 GRSFTRARDYDAMGSQTK-FVQCPDGELQK---RKEVVHTVSLHEIDVINSRTQGFLALF 216

Query:   147 SGSTVTLHEIVDVQAGDVITIDKATGK 173
             SG T  +   V  Q    +   +  GK
Sbjct:   217 SGDTGEIKSEVREQINAKVAEWREEGK 243

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CR28	RUVB2_CRYNJ	3, ., 6, ., 4, ., 1, 2	0.6813	0.4017	0.1943	yes	N/A
Q6CT29	RUVB2_KLULA	3, ., 6, ., 4, ., 1, 2	0.7362	0.4017	0.1927	yes	N/A
Q6FSF1	RUVB2_CANGA	3, ., 6, ., 4, ., 1, 2	0.7142	0.4017	0.1890	yes	N/A
Q4WKH9	RUVB2_ASPFU	3, ., 6, ., 4, ., 1, 2	0.6703	0.4017	0.1918	yes	N/A
Q5BGK3	RUVB2_EMENI	3, ., 6, ., 4, ., 1, 2	0.5072	0.5848	0.2799	yes	N/A
Q12464	RUVB2_YEAST	3, ., 6, ., 4, ., 1, 2	0.7362	0.4017	0.1910	yes	N/A
Q6BSB8	RUVB2_DEBHA	3, ., 6, ., 4, ., 1, 2	0.7472	0.4017	0.1875	yes	N/A
Q755G5	RUVB2_ASHGO	3, ., 6, ., 4, ., 1, 2	0.7032	0.4017	0.1918	yes	N/A
Q6C3X6	RUVB2_YARLI	3, ., 6, ., 4, ., 1, 2	0.6923	0.4017	0.1931	yes	N/A
O94692	RUVB2_SCHPO	3, ., 6, ., 4, ., 1, 2	0.6923	0.4017	0.1935	yes	N/A
Q4I948	RUVB2_GIBZE	3, ., 6, ., 4, ., 1, 2	0.6373	0.4017	0.1902	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
pfam06068	395	pfam06068, TIP49, TIP49 C-terminus	2e-34
COG1224	450	COG1224, TIP49, DNA helicase TIP49, TBP-interactin	3e-23
pfam06068	395	pfam06068, TIP49, TIP49 C-terminus	4e-10
COG1224	450	COG1224, TIP49, DNA helicase TIP49, TBP-interactin	2e-05

>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus

 Score =  125 bits (317), Expect = 2e-34
 Identities = 52/91 (57%), Positives = 65/91 (71%), Gaps = 5/91 (5%)

Query: 14  EETEMIEGEVVEIQI---ERPATGLGS--KVGKLTMKTTEMETSYDLGAKMIEAIGKEKV 68
           EE E+ EGEVVE++I   E P +G G   K GK+T+KTT+ME +  LG K+ E + KEKV
Sbjct: 113 EEKEVYEGEVVELEIEEAENPLSGYGKTIKHGKITLKTTKMEKTLKLGPKIYEQLQKEKV 172

Query: 69  QAGDVITIDKATGKITRLGRSFTRARDYDAT 99
           QAGDVI IDK TGK+ +LGRSF RA D+D  
Sbjct: 173 QAGDVIYIDKNTGKVKKLGRSFARATDFDLE 203

This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395

>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription]

 Score = 96.3 bits (240), Expect = 3e-23
 Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 14  EETEMIEGEVVEIQIERPATGLGS-----KVGKLTMKTTEMETSYDLGAKMIEAIGKEKV 68
           E  E+ EGEVVE++I R    L           +T+KT + E +  LG ++ E + KE V
Sbjct: 128 ETREVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEEKTLRLGPEIAEQLVKEGV 187

Query: 69  QAGDVITIDKATGKITRLGRSFTRARDYDATGAQTR 104
           + GDVI ID  TG++ +LGRS  RAR  D     TR
Sbjct: 188 EEGDVIYIDAETGRVKKLGRSKARAR-EDFDLEDTR 222

Length = 450

>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query: 159 VQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQC 197
           VQAGDVI IDK TGK+ +LGRSF RA D+D    +   C
Sbjct: 172 VQAGDVIYIDKNTGKVKKLGRSFARATDFDLEATEFVPC 210

This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395

>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription]

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 159 VQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTR 195
           V+ GDVI ID  TG++ +LGRS  RAR  D     TR
Sbjct: 187 VEEGDVIYIDAETGRVKKLGRSKARAR-EDFDLEDTR 222

Length = 450

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG2680|consensus	454		100.0
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	100.0
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	100.0
KOG1942|consensus	456		100.0
KOG1942|consensus	456		97.95
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.8
KOG2680|consensus	454		97.58
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	97.1
COG0090	275	RplB Ribosomal protein L2 [Translation, ribosomal	81.62

>KOG2680|consensus

Probab=100.00  E-value=1.2e-61  Score=446.42  Aligned_cols=173  Identities=55%  Similarity=0.756  Sum_probs=171.7

Q ss_pred             cccceeeceeEEEeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEEcCCC
Q psy654            2 SQMSTHSDTNHIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATG   81 (224)
Q Consensus         2 ~~~r~sigvrikE~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG   81 (224)
                      ||||||||+|||||+||+|||||+|+|+||++|.|+++|||||||+|||+.|+||.||+++|.||||++||||+||+++|
T Consensus       117 QAfRksiGvrIKEetevIEGEVVeiqidRp~tg~g~k~GKlt~kTtdMEt~ydlG~Kmi~~l~KeKV~aGDVI~idka~G  196 (454)
T KOG2680|consen  117 QAFRKSIGVRIKEETEVIEGEVVEIQIDRPATGMGSKVGKLTLKTTDMETIYDLGMKMIESLTKEKVQAGDVITIDKASG  196 (454)
T ss_pred             HHHHHhhceEeeheeeeecceEEEEEeeccccCcCcccceeEEeecchhhHHHHHHHHHHHhhHhhccCCceEEEEcccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEeeccccccccccccccccccccCCCcccccccccccccccccccCccCCCCCCCCceeeeeeeeccccceeeeee-
Q psy654           82 KITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSEDSGSTVTLHEIVDVQ-  160 (224)
Q Consensus        82 ~v~rlGRs~~~a~~yD~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~P~Gev~k~ke~v~~vTLHdlD~VN-  160 (224)
                      +|+|+||||++++|||++|++|+||                  |       ||   +||++|+||++|+|||||||++| 
T Consensus       197 kitKlGrSf~rsrdyDamG~~tkfV------------------q-------CP---eGElqkrkevvhtvsLHeIDViNS  248 (454)
T KOG2680|consen  197 KITKLGRSFTRSRDYDAMGSQTKFV------------------Q-------CP---EGELQKRKEVVHTVSLHEIDVINS  248 (454)
T ss_pred             eeehhhccccccccCCccCCcccee------------------c-------CC---chhhhheeeeeEeeeecccccccc
Confidence            9999999999999999999999999                  9       99   99999999999999999999999 


Q ss_pred             --cCceEEecCCCCccccchhcccccchhhhhccccccccCeeEecccc
Q psy654          161 --AGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTH  207 (224)
Q Consensus       161 --qGDVIlId~~tGEITkegRses~a~dIDk~VnK~V~eGKAEivpgvl  207 (224)
                        ||++++|..++|||+.+.|.+     +|..|.+|.++||||||||||
T Consensus       249 rtqG~lALFsGdTGEIr~EvRdq-----in~KV~eWreEGKAeivpGVL  292 (454)
T KOG2680|consen  249 RTQGFLALFSGDTGEIRSEVRDQ-----INTKVAEWREEGKAEIVPGVL  292 (454)
T ss_pred             cccceEEEEeCCcccccHHHHHH-----HHHHHHHHHhcCCeeeccceE
Confidence              899999999999999999999     999999999999999999997

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=100.00  E-value=3.3e-58  Score=428.24  Aligned_cols=171  Identities=37%  Similarity=0.517  Sum_probs=138.1

Q ss_pred             CcccceeeceeEEEeeeEEEEEEEEEEE---ccCCCCCCC--eEEEEEEEecCceeeeeccHHHHHHHHHccccccceEE
Q psy654            1 MSQMSTHSDTNHIEETEMIEGEVVEIQI---ERPATGLGS--KVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVIT   75 (224)
Q Consensus         1 m~~~r~sigvrikE~~ev~EGeVvei~i---~~~~~~~~~--~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~   75 (224)
                      |||||||||+||+|+++||||||+||++   ++|.+ |++  ..++|+|||+||+++|+||++|++||+||||++|||||
T Consensus       100 ~qa~RraIGvrIkE~~eV~EGeVvei~~~~~~~~~~-~~~~~~~~~i~LkT~~~~~~l~l~~~i~~~l~kekV~~GDVI~  178 (398)
T PF06068_consen  100 TQAFRRAIGVRIKEEKEVYEGEVVEIKIEEAENPLN-YGKTIKHGKITLKTTDMEKTLKLGPKIYEQLQKEKVRVGDVIY  178 (398)
T ss_dssp             HHHHHCSEEEEEEEEECEEEEEEEEEEE---E-TTS--SSSS-EEEEEEEETTCEEEEEE-CHHHHHHHHTT--TTCEEE
T ss_pred             HHHHHHhheEEEEEEEEEEEEEEEEEEEeeccCccc-cCCcceEEEEEEEEcCCceEecCCHHHHHHHHHhCCccCcEEE
Confidence            7999999999999999999999999999   66666 444  56899999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEeeccccccccccccccccccccCCCcccccccccccccccccccCccCCCCCCCCceeeeeeeeccccce
Q psy654           76 IDKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSEDSGSTVTLHE  155 (224)
Q Consensus        76 Id~~tG~v~rlGRs~~~a~~yD~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~P~Gev~k~ke~v~~vTLHd  155 (224)
                      ||++||+|+|+|||++++++||++.  ++||                  |       ||   +|+++|+||++|+|||||
T Consensus       179 Id~~tG~V~k~Grs~~~~~~~D~~~--~~~V------------------~-------~P---~Gev~K~KEiv~~vTLHD  228 (398)
T PF06068_consen  179 IDKNTGRVKKVGRSDSYAKDYDLEA--TKFV------------------P-------CP---KGEVHKRKEIVQTVTLHD  228 (398)
T ss_dssp             EETTTTEEEEEEEECCCS-TTSECC--TTEE-------------------------------SS-SEEEEEEEEEEEHHH
T ss_pred             EECCCCeEEEEecccchhhcccccc--ceEe------------------e-------CC---CCcceEEEEEEEEEeHHH
Confidence            9999999999999999999999966  4699                  8       88   999999999999999999


Q ss_pred             eeeee---cCceEEe----cCCCCccccchhcccccchhhhhccccccccCeeEecccc
Q psy654          156 IVDVQ---AGDVITI----DKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTH  207 (224)
Q Consensus       156 lD~VN---qGDVIlI----d~~tGEITkegRses~a~dIDk~VnK~V~eGKAEivpgvl  207 (224)
                      ||++|   +|.+.+|    .++++||++++|.+     +|+.|++|+++|+||||||||
T Consensus       229 lD~~Nsr~q~~lslf~~~~~~~~~EI~~elR~e-----Ink~V~~wieegkAelvpGVL  282 (398)
T PF06068_consen  229 LDVANSRPQDFLSLFGQLFKGDTGEITDELREE-----INKKVNKWIEEGKAELVPGVL  282 (398)
T ss_dssp             HHHHCC---------------------HHHHHH-----HHHHHHHHHHCTSEEEEE-EE
T ss_pred             hhhhhhccccHHHHHHhhcCCCcccchHHHHHH-----HhHHHHHHHhcCceEEecceE
Confidence            99999   4445555    88999999999999     999999999999999999996

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=100.00  E-value=3.2e-55  Score=408.42  Aligned_cols=172  Identities=33%  Similarity=0.421  Sum_probs=161.8

Q ss_pred             CcccceeeceeEEEeeeEEEEEEEEEEEccCCCCCCCeE-----EEEEEEecCceeeeeccHHHHHHHHHccccccceEE
Q psy654            1 MSQMSTHSDTNHIEETEMIEGEVVEIQIERPATGLGSKV-----GKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVIT   75 (224)
Q Consensus         1 m~~~r~sigvrikE~~ev~EGeVvei~i~~~~~~~~~~v-----~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~   75 (224)
                      |||||||||+||+|+++||||||+++++++..+||+||.     +.|+|||+||+++|+||++|++||.++||.+||||+
T Consensus       115 ~qa~RraIGvrikE~reV~EGeV~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k~~~lg~~i~~ql~~~~V~~GDVI~  194 (450)
T COG1224         115 TQALRRAIGVRIKETREVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEEKTLRLGPEIAEQLVKEGVEEGDVIY  194 (450)
T ss_pred             HHHHHHhhceEeeeeeEEEEEEEEEEEEeeccCCCCCccccccceEEEEEecccceEeecCHHHHHHHHHhCcccCCEEE
Confidence            699999999999999999999999999988777777763     579999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEeeccccccc-cccccccccccccCCCcccccccccccccccccccCccCCCCCCCCceeeeeeeeccccc
Q psy654           76 IDKATGKITRLGRSFTRAR-DYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSEDSGSTVTLH  154 (224)
Q Consensus        76 Id~~tG~v~rlGRs~~~a~-~yD~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~P~Gev~k~ke~v~~vTLH  154 (224)
                      ||++||+|+++|||+.+++ +||++.  ++||                  |       ||   +|||+|+||++|+||||
T Consensus       195 Id~etG~V~klGrs~~~~~~~~dl~~--~~~V------------------~-------~P---~Gev~K~KEi~~~vTLH  244 (450)
T COG1224         195 IDAETGRVKKLGRSKARAREDFDLED--TRFV------------------P-------LP---EGEVQKRKEIVQTVTLH  244 (450)
T ss_pred             EEccccEEEEeecccccccccccccc--eEEE------------------E-------CC---CCceeeeEEEEEEEEeh
Confidence            9999999999999999996 777766  5699                  8       88   99999999999999999


Q ss_pred             eeeeee---cCceEEecCCCCccccchhcccccchhhhhccccccccCeeEecccc
Q psy654          155 EIVDVQ---AGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTH  207 (224)
Q Consensus       155 dlD~VN---qGDVIlId~~tGEITkegRses~a~dIDk~VnK~V~eGKAEivpgvl  207 (224)
                      |||++|   +|.+.+|...+++|++++|.+     +|..|++|+++|+||||||||
T Consensus       245 DlDv~nar~~G~~sl~~~~~~eI~~evR~~-----vn~~V~~~ieeGkAElVpGVL  295 (450)
T COG1224         245 DLDVANARAQGILSLFSGGTGEITDEVREE-----VNEKVKKWIEEGKAELVPGVL  295 (450)
T ss_pred             hhhhhhccccchHhhhcCCcccCCHHHHHH-----HHHHHHHHHhcCcEEeecceE
Confidence            999999   667788888999999999999     999999999999999999997

>KOG1942|consensus

Probab=100.00  E-value=1e-55  Score=406.79  Aligned_cols=172  Identities=27%  Similarity=0.400  Sum_probs=164.6

Q ss_pred             CcccceeeceeEEEeeeEEEEEEEEEEE---ccCCCCCCCeEEE--EEEEecCceeeeeccHHHHHHHHHccccccceEE
Q psy654            1 MSQMSTHSDTNHIEETEMIEGEVVEIQI---ERPATGLGSKVGK--LTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVIT   75 (224)
Q Consensus         1 m~~~r~sigvrikE~~ev~EGeVvei~i---~~~~~~~~~~v~~--itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~   75 (224)
                      |++||||||+||||.+|||||||+|+.+   ++|.+|||+++++  |+|||.+++++|+|+|++||+|+||+|.+|||||
T Consensus       114 menfRRaIglRikEtKeVYEGEVtEl~p~e~enp~ggygKtIshv~i~LKtaKgtKqLkLdPsiyesi~kerv~~GDViY  193 (456)
T KOG1942|consen  114 MENFRRAIGLRIKETKEVYEGEVTELTPVEAENPLGGYGKTISHVVIGLKTAKGTKQLKLDPSIYESIQKERVEVGDVIY  193 (456)
T ss_pred             HHHHHHHhhhhhhhhhhhhcceeeEeccccccCCCCccCceeeeeEEEEeecCCcceeccChHHHHHHHHhhhccCcEEE
Confidence            7899999999999999999999999975   8999999999998  6999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEeeccccccccccccccccccccCCCcccccccccccccccccccCccCCCCCCCCceeeeeeeeccccce
Q psy654           76 IDKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSEDSGSTVTLHE  155 (224)
Q Consensus        76 Id~~tG~v~rlGRs~~~a~~yD~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~P~Gev~k~ke~v~~vTLHd  155 (224)
                      |++|||.|+|+|||+++|.+||+++++  ||                  |       +|   +|+|+|+||++|+|||||
T Consensus       194 IEaNsGavKrvGRsda~ateFDLEaee--yV------------------P-------lP---KGeVhKkKeivQdVtLhD  243 (456)
T KOG1942|consen  194 IEANSGAVKRVGRSDAYATEFDLEAEE--YV------------------P-------LP---KGEVHKKKEIVQDVTLHD  243 (456)
T ss_pred             EEeccchhhcccccccchhhcccccce--ee------------------c-------CC---ccchhhhHHHhhhcchhh
Confidence            999999999999999999999999976  99                  8       55   999999999999999999


Q ss_pred             eeeee---cC--ce-----EEecCCCCccccchhcccccchhhhhccccccccCeeEecccc
Q psy654          156 IVDVQ---AG--DV-----ITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTH  207 (224)
Q Consensus       156 lD~VN---qG--DV-----IlId~~tGEITkegRses~a~dIDk~VnK~V~eGKAEivpgvl  207 (224)
                      ||++|   ||  |+     +++.++++|||+++|.+     +|++||+|+++|.|||+||||
T Consensus       244 LD~ANARPqGgqdvlsmmgqlmkPkKTEITdkLR~e-----iNkvVn~Yid~GvAElvPGVL  300 (456)
T KOG1942|consen  244 LDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRGE-----INKVVNKYIDQGVAELVPGVL  300 (456)
T ss_pred             cccccCCCCccchHHHHHHHhcCCccchhHHHHHHH-----HHHHHHHHHhcchhhhcCcce
Confidence            99999   55  43     68999999999999999     999999999999999999997

>KOG1942|consensus

Probab=97.95  E-value=3.2e-06  Score=79.78  Aligned_cols=43  Identities=30%  Similarity=0.468  Sum_probs=41.3

Q ss_pred             cCceEEecCCCCccccchhcccccchhhhhccccccccCeeEe
Q psy654          161 AGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIV  203 (224)
Q Consensus       161 qGDVIlId~~tGEITkegRses~a~dIDk~VnK~V~eGKAEiv  203 (224)
                      .||++||+.++|.|++.|||++||+|||++..+|++.||||+.
T Consensus       188 ~GDViYIEaNsGavKrvGRsda~ateFDLEaeeyVPlPKGeVh  230 (456)
T KOG1942|consen  188 VGDVIYIEANSGAVKRVGRSDAYATEFDLEAEEYVPLPKGEVH  230 (456)
T ss_pred             cCcEEEEEeccchhhcccccccchhhcccccceeecCCccchh
Confidence            6999999999999999999999999999999999999999864

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.80  E-value=7e-06  Score=78.25  Aligned_cols=43  Identities=42%  Similarity=0.694  Sum_probs=36.3

Q ss_pred             cCceEEecCCCCccccchhcccccchhhhhccccccccCeeEe
Q psy654          161 AGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIV  203 (224)
Q Consensus       161 qGDVIlId~~tGEITkegRses~a~dIDk~VnK~V~eGKAEiv  203 (224)
                      .||+++|++++|.|++.||++++++|||+...+|+++|+||+.
T Consensus       173 ~GDVI~Id~~tG~V~k~Grs~~~~~~~D~~~~~~V~~P~Gev~  215 (398)
T PF06068_consen  173 VGDVIYIDKNTGRVKKVGRSDSYAKDYDLEATKFVPCPKGEVH  215 (398)
T ss_dssp             TTCEEEEETTTTEEEEEEEECCCS-TTSECCTTEE---SS-SE
T ss_pred             cCcEEEEECCCCeEEEEecccchhhccccccceEeeCCCCcce
Confidence            6899999999999999999999999999999999999999764

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>KOG2680|consensus

Probab=97.58  E-value=2.7e-05  Score=73.82  Aligned_cols=46  Identities=70%  Similarity=1.022  Sum_probs=41.5

Q ss_pred             eecCceEEecCCCCccccchhcccccchhhhhcc--ccccccCeeEec
Q psy654          159 VQAGDVITIDKATGKITRLGRSFTRARDYDATGA--QTRQCNLNEIVP  204 (224)
Q Consensus       159 VNqGDVIlId~~tGEITkegRses~a~dIDk~Vn--K~V~eGKAEivp  204 (224)
                      +.+||+|.+++++|.|++.|||+++++|||++..  +|++||.|||..
T Consensus       183 V~aGDVI~idka~GkitKlGrSf~rsrdyDamG~~tkfVqCPeGElqk  230 (454)
T KOG2680|consen  183 VQAGDVITIDKASGKITKLGRSFTRSRDYDAMGSQTKFVQCPEGELQK  230 (454)
T ss_pred             ccCCceEEEEcccceeehhhccccccccCCccCCccceecCCchhhhh
Confidence            4469999999999999999999999999999865  589999999864

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=97.10  E-value=0.00024  Score=68.34  Aligned_cols=44  Identities=41%  Similarity=0.608  Sum_probs=41.3

Q ss_pred             cCceEEecCCCCccccchhcccccc-hhhhhccccccccCeeEec
Q psy654          161 AGDVITIDKATGKITRLGRSFTRAR-DYDATGAQTRQCNLNEIVP  204 (224)
Q Consensus       161 qGDVIlId~~tGEITkegRses~a~-dIDk~VnK~V~eGKAEivp  204 (224)
                      .||+|+|+.++|.|++.||++++++ |+|....+|+++|+||+..
T Consensus       189 ~GDVI~Id~etG~V~klGrs~~~~~~~~dl~~~~~V~~P~Gev~K  233 (450)
T COG1224         189 EGDVIYIDAETGRVKKLGRSKARAREDFDLEDTRFVPLPEGEVQK  233 (450)
T ss_pred             cCCEEEEEccccEEEEeecccccccccccccceEEEECCCCceee
Confidence            5899999999999999999999996 9999999999999998753

>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]

Probab=81.62  E-value=2.4  Score=39.41  Aligned_cols=54  Identities=20%  Similarity=0.361  Sum_probs=41.9

Q ss_pred             eEEEeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEE
Q psy654           11 NHIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITID   77 (224)
Q Consensus        11 rikE~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id   77 (224)
                      .++..+..++|+|++|+.|...+   ..|+.|..  .|+|+.|-|.++        ++.+||+|++=
T Consensus        66 dfkr~k~~i~g~V~~IeyDP~Rs---A~IAlv~y--~dGek~yilAp~--------Gl~vGd~I~sG  119 (275)
T COG0090          66 DFKRNKDGIPGKVEDIEYDPNRS---APIALVVY--EDGEKRYILAPE--------GLKVGDVIESG  119 (275)
T ss_pred             ccccccCCccEEEEEEEECCCCC---cceEEEEe--cCCCEEEEEccC--------ccccCCEEEeC
Confidence            45566778999999999876553   34565544  599999999886        99999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2cqa_A	95	Solution Structure Of Rsgi Ruh-039, A Fragment Of C		2e-27
2cqa_A	95	Solution Structure Of Rsgi Ruh-039, A Fragment Of C		2e-08
2c9o_A	456	3d Structure Of The Human Ruvb-Like Helicase Ruvbl1		5e-05

>pdb|2CQA|A Chain A, Solution Structure Of Rsgi Ruh-039, A Fragment Of C- Terminal Domain Of Ruvb-Like 2 From Human Cdna Length = 95

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 67/74 (90%)
Query: 27  QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
           QI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDVITIDKATGKI++L
Sbjct: 22  QIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKL 81
Query: 87  GRSFTRARDYDATG 100
           GRSFTRAR   ++G
Sbjct: 82  GRSFTRARSGPSSG 95

>pdb|2CQA|A Chain A, Solution Structure Of Rsgi Ruh-039, A Fragment Of C- Terminal Domain Of Ruvb-Like 2 From Human Cdna Length = 95

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 30/33 (90%)
Query: 159 VQAGDVITIDKATGKITRLGRSFTRARDYDATG 191
           VQAGDVITIDKATGKI++LGRSFTRAR   ++G
Sbjct: 63  VQAGDVITIDKATGKISKLGRSFTRARSGPSSG 95

>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 Length = 456

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 29  ERPATGLGSKVGKLT--MKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86
           E P  G G  +  +   +KT +      L   + E++ KE+V+AGDVI I+  +G + R 
Sbjct: 144 ENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQ 203
Query: 87  GRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSIS 128
           GR  T A ++D   A+    LP    H      +K+++Q ++
Sbjct: 204 GRCDTYATEFDLE-AEEYVPLPKGDVH-----KKKEIIQDVT 239

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
2cqa_A	95	RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP	5e-40
2cqa_A	95	RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP	6e-12
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	5e-21
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	2e-07
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	3e-06

>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14 Length = 95

 Score =  131 bits (332), Expect = 5e-40
 Identities = 70/87 (80%), Positives = 80/87 (91%)

Query: 14  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
           EETE+IEGEVVEIQI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDV
Sbjct: 9   EETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 68

Query: 74  ITIDKATGKITRLGRSFTRARDYDATG 100
           ITIDKATGKI++LGRSFTRAR   ++G
Sbjct: 69  ITIDKATGKISKLGRSFTRARSGPSSG 95

>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14 Length = 95

 Score = 59.0 bits (143), Expect = 6e-12
 Identities = 26/33 (78%), Positives = 30/33 (90%)

Query: 159 VQAGDVITIDKATGKITRLGRSFTRARDYDATG 191
           VQAGDVITIDKATGKI++LGRSFTRAR   ++G
Sbjct: 63  VQAGDVITIDKATGKISKLGRSFTRARSGPSSG 95

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 89.7 bits (222), Expect = 5e-21
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 14  EETEMIEGEVVEIQI---ERPATGLGSKV--GKLTMKTTEMETSYDLGAKMIEAIGKEKV 68
           E  E+ EGEV E+     E P  G G  +    + +KT +      L   + E++ KE+V
Sbjct: 126 ETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERV 185

Query: 69  QAGDVITIDKATGKITRLGRSFTRARDYDATG 100
           +AGDVI I+  +G + R GR  T A ++D   
Sbjct: 186 EAGDVIYIEANSGAVKRQGRCDTYATEFDLEA 217

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 159 VQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRQC 197
           V+AGDVI I+  +G + R GR  T A ++D    +    
Sbjct: 185 VEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPL 223

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 15/102 (14%)

Query: 57  AKMIEAIGKEKVQAGDVITIDKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSS 116
           A ++  + +E   AG  + I    G     G++        A G  T  T  + S   S 
Sbjct: 56  AGVVLEMIREGKIAGRAVLIAGQPGT----GKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111

Query: 117 WGVQKDVVQSISNNIICPVVPRPESSRSEDSGS--TVTLHEI 156
                     +S         R        +G+  TV+LHEI
Sbjct: 112 ---------EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEI 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2cqa_A	95	RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP	100.0
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.57
2cqa_A	95	RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP	97.56

>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14

Probab=100.00  E-value=3.1e-41  Score=261.94  Aligned_cols=94  Identities=76%  Similarity=1.044  Sum_probs=92.7

Q ss_pred             eeceeEEEeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEEcCCCcEEEe
Q psy654            7 HSDTNHIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL   86 (224)
Q Consensus         7 sigvrikE~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~v~rl   86 (224)
                      |||+||||++|||||||+||+++++.+||+++.++|+|||+||+++|+||++|++||+||||++|||||||++||+|+|+
T Consensus         2 sIGvRIkE~keVyEGEV~ei~~~~~~~~~~~~~~~itLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id~~sG~V~kl   81 (95)
T 2cqa_A            2 SSGSSGKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKL   81 (95)
T ss_dssp             CCCCSCCCCCSEEEEEEEEEEEECTTSSSSSCEEEEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTTEEEEE
T ss_pred             CcEEEEEEEEEEEEEEEEEEEEeecCCCCcceEEEEEEEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEEccCCEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccccccccc
Q psy654           87 GRSFTRARDYDATG  100 (224)
Q Consensus        87 GRs~~~a~~yD~~~  100 (224)
                      ||||++|++||++|
T Consensus        82 GRs~~~a~~yDl~g   95 (95)
T 2cqa_A           82 GRSFTRARSGPSSG   95 (95)
T ss_dssp             ECCCCCCCCCSCCC
T ss_pred             EEeeccccccccCC
Confidence            99999999999986

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.57  E-value=1.1e-14  Score=132.84  Aligned_cols=171  Identities=25%  Similarity=0.374  Sum_probs=129.6

Q ss_pred             cccceeeceeEEEeeeEEEEEEEEEEEccCCC---CCCCeEE--EEEEEecCceeeeeccHHHHHHHHHccccccceEEE
Q psy654            2 SQMSTHSDTNHIEETEMIEGEVVEIQIERPAT---GLGSKVG--KLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITI   76 (224)
Q Consensus         2 ~~~r~sigvrikE~~ev~EGeVvei~i~~~~~---~~~~~v~--~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~I   76 (224)
                      +.|++++|.+..+..-+|-.|+-.+-..+..+   +++....  .++|+|.++++++++.++++++|.++++..||+|+|
T Consensus       114 ~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i  193 (456)
T 2c9o_A          114 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYI  193 (456)
T ss_dssp             HHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEE
T ss_pred             HHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEE
Confidence            46888999999999999999999998877655   3343332  368999999999999999999999999999999999


Q ss_pred             EcCCCcEEEeeccccccccccccccccccccCCCcccccccccccccccccccCccCCCCCCCCceeeeeeeecccccee
Q psy654           77 DKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSEDSGSTVTLHEI  156 (224)
Q Consensus        77 d~~tG~v~rlGRs~~~a~~yD~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~P~Gev~k~ke~v~~vTLHdl  156 (224)
                      .++|+.+.++++++.+...||.+...  ++                  |       +|   .+++.+++++.+.+++|||
T Consensus       194 ~attn~~~~ld~a~~r~~rfd~~~~~--~v------------------~-------~p---~~~~~~R~~il~~~~~~dl  243 (456)
T 2c9o_A          194 EANSGAVKRQGRCDTYATEFDLEAEE--YV------------------P-------LP---KGDVHKKKEIIQDVTLHDL  243 (456)
T ss_dssp             ETTTCCEEEEEEETTSCCTTSCSSSS--EE------------------C-------CC---CSCSEEEEEEEEEEEHHHH
T ss_pred             EcCCCCcccCChhhcCCcccCcceeE--ec------------------C-------CC---chhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999985433  56                  6       55   9999999999999999999


Q ss_pred             eeee---cC--ceE-E----ecCCCCccccchhcccccchhhhhccccccccCeeEecccc
Q psy654          157 VDVQ---AG--DVI-T----IDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTH  207 (224)
Q Consensus       157 D~VN---qG--DVI-l----Id~~tGEITkegRses~a~dIDk~VnK~V~eGKAEivpgvl  207 (224)
                      |.++   +|  |+. +    +.+..++|....|..     ++....+|.+++.++++|+|+
T Consensus       244 ~~~a~~t~ggadl~~l~~~i~~p~~~~I~~~lr~~-----I~~~l~~~~~~g~~~v~~~Vl  299 (456)
T 2c9o_A          244 DVANARPQGGQDILSMMGQLMKPKKTEITDKLRGE-----INKVVNKYIDQGIAELVPGVL  299 (456)
T ss_dssp             HHTC-----------------------------CH-----HHHHHHHHHHTTSEEEEECEE
T ss_pred             HHHHHhCCChhHHHHHHhhhcccchhhHHHHHHHH-----HHHHHHHHHHhccccccceEE
Confidence            9998   44  432 2    233578999888888     999999999999999999984

>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14

Probab=97.56  E-value=2.1e-05  Score=61.01  Aligned_cols=31  Identities=77%  Similarity=1.098  Sum_probs=29.2

Q ss_pred             cCceEEecCCCCccccchhcccccchhhhhc
Q psy654          161 AGDVITIDKATGKITRLGRSFTRARDYDATG  191 (224)
Q Consensus       161 qGDVIlId~~tGEITkegRses~a~dIDk~V  191 (224)
                      .||+|+|++++|.|++.|||+++|+|||++.
T Consensus        65 ~GDVI~Id~~sG~V~klGRs~~~a~~yDl~g   95 (95)
T 2cqa_A           65 AGDVITIDKATGKISKLGRSFTRARSGPSSG   95 (95)
T ss_dssp             TTSEEEEETTTTEEEEEECCCCCCCCCSCCC
T ss_pred             eCCEEEEEccCCEEEEEEEeeccccccccCC
Confidence            6899999999999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d2cqaa1	82	b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TI	2e-37
d2cqaa1	82	b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TI	2e-09

>d2cqaa1 b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TIP49b) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: TIP49 domain
domain: RuvB-like 2 protein, RUVBL2 (TIP49b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 2e-37
 Identities = 69/81 (85%), Positives = 77/81 (95%)

Query: 14 EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
          EETE+IEGEVVEIQI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDV
Sbjct: 2  EETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 61

Query: 74 ITIDKATGKITRLGRSFTRAR 94
          ITIDKATGKI++LGRSFTRAR
Sbjct: 62 ITIDKATGKISKLGRSFTRAR 82

>d2cqaa1 b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TIP49b) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: TIP49 domain
domain: RuvB-like 2 protein, RUVBL2 (TIP49b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (121), Expect = 2e-09
 Identities = 25/27 (92%), Positives = 27/27 (100%)

Query: 159 VQAGDVITIDKATGKITRLGRSFTRAR 185
           VQAGDVITIDKATGKI++LGRSFTRAR
Sbjct: 56  VQAGDVITIDKATGKISKLGRSFTRAR 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d2cqaa1	82	RuvB-like 2 protein, RUVBL2 (TIP49b) {Human (Homo	100.0
d2cqaa1	82	RuvB-like 2 protein, RUVBL2 (TIP49b) {Human (Homo	96.73
d1vqoa2	90	N-terminal domain of ribosomal protein L2 {Archaeo	82.21

>d2cqaa1 b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TIP49b) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: TIP49 domain
domain: RuvB-like 2 protein, RUVBL2 (TIP49b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-38  Score=235.37  Aligned_cols=82  Identities=84%  Similarity=1.164  Sum_probs=80.5

Q ss_pred             EEeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEEcCCCcEEEeeccccc
Q psy654           13 IEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRLGRSFTR   92 (224)
Q Consensus        13 kE~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~v~rlGRs~~~   92 (224)
                      ||++|||||||+||++++|.+|||+++|+|||||+||+++|+||++||+||+||||++|||||||++||+|+|+||||+|
T Consensus         1 kE~~eV~EGEV~ei~i~~~~~~~~~~~~~itLKTtd~e~~l~lg~ki~e~L~kekV~~GDVI~ID~~sG~V~klGRs~~~   80 (82)
T d2cqaa1           1 KEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTR   80 (82)
T ss_dssp             CCCCSEEEEEEEEEEEECTTSSSSSCEEEEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTTEEEEEECCCCC
T ss_pred             CcceEEEEEEEEEEEEccCCCCCcceeEEEEEEecCCeEEEeCCHHHHHHHHHcCCCcCCEEEEECCCcEEEEeeeccee
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cc
Q psy654           93 AR   94 (224)
Q Consensus        93 a~   94 (224)
                      |+
T Consensus        81 ar   82 (82)
T d2cqaa1          81 AR   82 (82)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>d2cqaa1 b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TIP49b) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: TIP49 domain
domain: RuvB-like 2 protein, RUVBL2 (TIP49b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00024  Score=52.00  Aligned_cols=25  Identities=92%  Similarity=1.294  Sum_probs=23.5

Q ss_pred             cCceEEecCCCCccccchhcccccc
Q psy654          161 AGDVITIDKATGKITRLGRSFTRAR  185 (224)
Q Consensus       161 qGDVIlId~~tGEITkegRses~a~  185 (224)
                      .||+|+|++++|.|++.|||++||+
T Consensus        58 ~GDVI~ID~~sG~V~klGRs~~~ar   82 (82)
T d2cqaa1          58 AGDVITIDKATGKISKLGRSFTRAR   82 (82)
T ss_dssp             TTSEEEEETTTTEEEEEECCCCCCC
T ss_pred             cCCEEEEECCCcEEEEeeecceecC
Confidence            6999999999999999999998874

>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=82.21  E-value=0.79  Score=32.90  Aligned_cols=52  Identities=21%  Similarity=0.392  Sum_probs=40.3

Q ss_pred             EeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEEc
Q psy654           14 EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDK   78 (224)
Q Consensus        14 E~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~   78 (224)
                      +..+.+.|+|++|+.+-..   +..++.+.+  .++++.|=|.|+        ++.+||.|..-+
T Consensus        33 ~~~~~i~g~V~~IeyDP~R---sa~iAlv~~--~dg~~~yilApe--------gl~vG~~I~~G~   84 (90)
T d1vqoa2          33 EDGDVIAGTVVDIEHDPAR---SAPVAAVEF--EDGDRRLILAPE--------GVGVGDELQVGV   84 (90)
T ss_dssp             CSSCCCEEEEEEEEEETTT---TEEEEEEEE--TTSCEEEECCBT--------TCBTTCEEEBST
T ss_pred             cccCcccEEEEEEEecCCC---CceEEEEEe--cCCCEEEEECcC--------CCCCCCEEEECC
Confidence            4567899999999987644   335666654  688899999885        999999998644