Psyllid ID: psy6706

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESDVKILDLGSQ
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccccccEEEcccccccccEEEEEEEEEccccccccEEEEEccEEEEEEEcccccccEEEEEcccccccccEEccEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccEEEEccccccHcccHHHHHHHHcccccccEEEEcEEEEEEcccHHHHEHHccccEEEEEEEHccccEEEEEEHHHcHcccccccccEEEEHHHHEcccccccccccc
Coil and Loop (DISEMBL)
mgrifldhiggsrlfsCAACDTILTNRRELISTRFTGATGRAFLFHRVVnlnysdvqdRVMLTGrhmvrdvsckncntklGWVYEFALEETQRYKEGRVILERALVTESDVKILDLGSQ
Flexible Loop (DISEMBL)
MGRIFldhiggsrlfSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGrhmvrdvsckncntklGWVYEFALEETQRYKEGRVILeralvtesdvkildlgsq
Low Complexity Region (SEG)
MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESDVKILDLGSQ
Disordered region (IsUnstruct)
***IFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESDVKIL*****
Disordered Region (DISOPRED)
MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESDVK*******
Disordered Region (DISEMBL)
MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESDVKILDLGSQ
Disordered Region (DISPRO)
*GRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESDVKILDLGSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q5RDU7	121	Protein yippee-like 5 OS=	yes	N/A	0.924	0.909	0.872	8e-53
P62700	121	Protein yippee-like 5 OS=	yes	N/A	0.924	0.909	0.872	8e-53
P62699	121	Protein yippee-like 5 OS=	yes	N/A	0.924	0.909	0.872	8e-53
Q65Z55	121	Protein yippee-like 5 OS=	N/A	N/A	0.924	0.909	0.872	8e-53
Q3ZBE7	121	Protein yippee-like 5 OS=	yes	N/A	0.924	0.909	0.872	8e-53
Q4R4Q6	121	Protein yippee-like 5 OS=	N/A	N/A	0.924	0.909	0.863	3e-52
Q9XZF0	121	Protein yippee OS=Drosoph	yes	N/A	0.924	0.909	0.745	7e-46
Q9ESC7	118	Protein yippee-like 1 OS=	no	N/A	0.840	0.847	0.480	7e-23
O44440	161	Protein yippee-like B0546	yes	N/A	0.865	0.639	0.518	1e-22
O60688	119	Protein yippee-like 1 OS=	no	N/A	0.773	0.773	0.510	1e-22

>sp|Q5RDU7|YPEL5_PONAB Protein yippee-like 5 OS=Pongo abelii GN=YPEL5 PE=2 SV=1

 Score =  205 bits (521), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/110 (87%), Positives = 105/110 (95%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDHIGG+RLFSCA CDTILTNR ELISTRFTGATGRAFLF++VVNL YS+VQDRV
Sbjct: 1   MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNCN+KLGW+YEFA E++QRYKEGRVILERALV ES+
Sbjct: 61  MLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESE 110

Pongo abelii (taxid: 9601)

>sp|P62700|YPEL5_MOUSE Protein yippee-like 5 OS=Mus musculus GN=Ypel5 PE=2 SV=1

 Score =  205 bits (521), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/110 (87%), Positives = 105/110 (95%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDHIGG+RLFSCA CDTILTNR ELISTRFTGATGRAFLF++VVNL YS+VQDRV
Sbjct: 1   MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNCN+KLGW+YEFA E++QRYKEGRVILERALV ES+
Sbjct: 61  MLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESE 110

Mus musculus (taxid: 10090)

>sp|P62699|YPEL5_HUMAN Protein yippee-like 5 OS=Homo sapiens GN=YPEL5 PE=1 SV=1

 Score =  205 bits (521), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/110 (87%), Positives = 105/110 (95%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDHIGG+RLFSCA CDTILTNR ELISTRFTGATGRAFLF++VVNL YS+VQDRV
Sbjct: 1   MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNCN+KLGW+YEFA E++QRYKEGRVILERALV ES+
Sbjct: 61  MLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESE 110

Homo sapiens (taxid: 9606)

>sp|Q65Z55|YPEL5_CHLAE Protein yippee-like 5 OS=Chlorocebus aethiops GN=YPEL5 PE=2 SV=1

 Score =  205 bits (521), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/110 (87%), Positives = 105/110 (95%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDHIGG+RLFSCA CDTILTNR ELISTRFTGATGRAFLF++VVNL YS+VQDRV
Sbjct: 1   MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNCN+KLGW+YEFA E++QRYKEGRVILERALV ES+
Sbjct: 61  MLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESE 110

Chlorocebus aethiops (taxid: 9534)

>sp|Q3ZBE7|YPEL5_BOVIN Protein yippee-like 5 OS=Bos taurus GN=YPEL5 PE=2 SV=1

 Score =  205 bits (521), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/110 (87%), Positives = 105/110 (95%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDHIGG+RLFSCA CDTILTNR ELISTRFTGATGRAFLF++VVNL YS+VQDRV
Sbjct: 1   MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNCN+KLGW+YEFA E++QRYKEGRVILERALV ES+
Sbjct: 61  MLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESE 110

Bos taurus (taxid: 9913)

>sp|Q4R4Q6|YPEL5_MACFA Protein yippee-like 5 OS=Macaca fascicularis GN=YPEL5 PE=2 SV=1

 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/110 (86%), Positives = 104/110 (94%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDHIGG+RLFSCA CD ILTNR ELISTRFTGATGRAFLF++VVNL YS+VQDRV
Sbjct: 1   MGRIFLDHIGGTRLFSCANCDAILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNCN+KLGW+YEFA E++QRYKEGRVILERALV ES+
Sbjct: 61  MLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESE 110

Macaca fascicularis (taxid: 9541)

>sp|Q9XZF0|YIPP_DROME Protein yippee OS=Drosophila melanogaster GN=Yippee PE=1 SV=1

 Score =  182 bits (461), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 98/110 (89%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFL+H+GG +LF+CA C T LTNR +LISTRFTGATGRA+LF RVVNL +S++Q+RV
Sbjct: 1   MGRIFLEHLGGLKLFNCAQCHTNLTNRSQLISTRFTGATGRAYLFKRVVNLTFSNIQERV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDV CKNC  KLGW+YEFA EE+Q+YKEGRVILE AL+TE++
Sbjct: 61  MLTGRHMVRDVMCKNCGAKLGWMYEFATEESQKYKEGRVILEYALITEAE 110

Drosophila melanogaster (taxid: 7227)

>sp|Q9ESC7|YPEL1_MOUSE Protein yippee-like 1 OS=Mus musculus GN=Ypel1 PE=2 SV=1

 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 3   RIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVML 62
           + +L H    R +SC  C   L N  ELIS  F G+ GRA+LF+ VVN+     ++RV+L
Sbjct: 11  QAYLPHC--HRTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLL 68

Query: 63  TGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERA 104
           TG H V D+ C+NC T LGW YE A E +Q+YKEG+ I+E A
Sbjct: 69  TGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIELA 110

May play a role in epithelioid conversion of fibroblasts.

Mus musculus (taxid: 10090)

>sp|O44440|YPL2_CAEEL Protein yippee-like B0546.4 OS=Caenorhabditis elegans GN=B0546.4 PE=3 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 67/106 (63%), Gaps = 3/106 (2%)

Query: 1   MGRIFLDHIGGSR--LFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQD 58
           MGR F   I G+R  L+ C  C+T LT  +EL S  FTG+TG A LF R  N+ Y   + 
Sbjct: 1   MGRQFAG-ICGARGSLYGCVVCNTYLTCSKELTSKAFTGSTGPATLFKRAWNVVYGRCEH 59

Query: 59  RVMLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERA 104
           R M TG H VRDV C  CN KLGW+YE A+ E+Q YKE +VI+E A
Sbjct: 60  RKMTTGWHTVRDVFCVTCNQKLGWMYEMAVSESQTYKETQVIIENA 105

Caenorhabditis elegans (taxid: 6239)

>sp|O60688|YPEL1_HUMAN Protein yippee-like 1 OS=Homo sapiens GN=YPEL1 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 61/92 (66%)

Query: 13  RLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVS 72
           R +SC  C   L N  ELIS  F G+ GRA+LF+ VVN+     ++RV+LTG H V D+ 
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 73  CKNCNTKLGWVYEFALEETQRYKEGRVILERA 104
           C+NC T LGW YE A E +Q+YKEG+ I+E A
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELA 110

May play a role in epithelioid conversion of fibroblasts.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
427786203	118	Hypothetical protein [Rhipicephalus pulc	0.924	0.932	0.927	1e-53
241737494	143	Yippee-type zinc-binding protein, putati	0.924	0.769	0.890	3e-53
346473681	118	hypothetical protein [Amblyomma maculatu	0.924	0.932	0.909	4e-53
260803850	121	hypothetical protein BRAFLDRAFT_262914 [	0.924	0.909	0.9	8e-53
442762103	157	Putative yippee-type zinc-binding protei	0.924	0.700	0.881	1e-52
242025080	119	yippee protein, putative [Pediculus huma	0.924	0.924	0.890	1e-52
308321355	121	yippee-like 5 [Ictalurus furcatus]	0.924	0.909	0.881	1e-51
432096770	139	Protein yippee-like 5 [Myotis davidii]	0.924	0.791	0.872	1e-51
350582577	134	PREDICTED: protein yippee-like 5-like is	0.924	0.820	0.872	2e-51
112982986	121	hemolin-interacting protein [Bombyx mori	0.924	0.909	0.890	2e-51

>gi|427786203|gb|JAA58553.1| Hypothetical protein [Rhipicephalus pulchellus]

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/110 (92%), Positives = 107/110 (97%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDHIGGSRLFSCA+CDTILTNR ELISTRFTGATGRAFLF++VVNLNYS+VQDRV
Sbjct: 1   MGRIFLDHIGGSRLFSCASCDTILTNRSELISTRFTGATGRAFLFNKVVNLNYSEVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNC+TKLGWVYEFA EE QRYKEGRVILERALVTESD
Sbjct: 61  MLTGRHMVRDVSCKNCDTKLGWVYEFATEEGQRYKEGRVILERALVTESD 110

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241737494|ref|XP_002414032.1| Yippee-type zinc-binding protein, putative [Ixodes scapularis] gi|215507886|gb|EEC17340.1| Yippee-type zinc-binding protein, putative [Ixodes scapularis]

 Score =  211 bits (538), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/110 (89%), Positives = 108/110 (98%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFL+HIGG+RLFSCA+CDT+LTNR ELISTRFTGATGRAFLF++VVNLNYS+VQDRV
Sbjct: 26  MGRIFLEHIGGARLFSCASCDTVLTNRNELISTRFTGATGRAFLFNKVVNLNYSEVQDRV 85

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNC+TKLGW+YEFA EE+QRYKEGRVILERALVTESD
Sbjct: 86  MLTGRHMVRDVSCKNCDTKLGWIYEFATEESQRYKEGRVILERALVTESD 135

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346473681|gb|AEO36685.1| hypothetical protein [Amblyomma maculatum]

 Score =  211 bits (538), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 108/110 (98%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFL+HIGGSRLFSCA+CDTILTNR ELISTRFTGATGRAFLF++VVNLN+S+VQDRV
Sbjct: 1   MGRIFLEHIGGSRLFSCASCDTILTNRSELISTRFTGATGRAFLFNKVVNLNFSEVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNC+TKLGWVYEFA EE+QRYKEGRVILERALVTESD
Sbjct: 61  MLTGRHMVRDVSCKNCDTKLGWVYEFATEESQRYKEGRVILERALVTESD 110

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260803850|ref|XP_002596802.1| hypothetical protein BRAFLDRAFT_262914 [Branchiostoma floridae] gi|229282062|gb|EEN52814.1| hypothetical protein BRAFLDRAFT_262914 [Branchiostoma floridae]

 Score =  210 bits (535), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 99/110 (90%), Positives = 105/110 (95%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDHIGG+RLFSCA CDTILTNR ELISTRFTGATGRAFLF++VVNLNYS+VQDRV
Sbjct: 1   MGRIFLDHIGGTRLFSCATCDTILTNRSELISTRFTGATGRAFLFNKVVNLNYSEVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNC+ KLGW+YEFA EE QRYKEGRVILERALVTESD
Sbjct: 61  MLTGRHMVRDVSCKNCDAKLGWIYEFATEENQRYKEGRVILERALVTESD 110

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|442762103|gb|JAA73210.1| Putative yippee-type zinc-binding protein, partial [Ixodes ricinus]

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/110 (88%), Positives = 108/110 (98%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFL+HIGG+RLFSCA+CDT+LTNR ELISTRFTGATGRAFLF++VVNLNYS+VQDRV
Sbjct: 40  MGRIFLEHIGGARLFSCASCDTVLTNRNELISTRFTGATGRAFLFNKVVNLNYSEVQDRV 99

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRH+VRDVSCKNC+TKLGW+YEFA EE+QRYKEGRVILERALVTESD
Sbjct: 100 MLTGRHVVRDVSCKNCDTKLGWIYEFATEESQRYKEGRVILERALVTESD 149

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242025080|ref|XP_002432954.1| yippee protein, putative [Pediculus humanus corporis] gi|212518463|gb|EEB20216.1| yippee protein, putative [Pediculus humanus corporis]

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/110 (89%), Positives = 106/110 (96%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDH+GG+RLFSCA+CDTILTNR ELISTRFTGATGRAFLF+RVVNLNYSDVQDRV
Sbjct: 1   MGRIFLDHVGGTRLFSCASCDTILTNRSELISTRFTGATGRAFLFNRVVNLNYSDVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDV+CKNC+ KLGW+YEFA EE QRYKEGRVILERALVTE+D
Sbjct: 61  MLTGRHMVRDVTCKNCDAKLGWIYEFATEENQRYKEGRVILERALVTETD 110

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308321355|gb|ADO27829.1| yippee-like 5 [Ictalurus furcatus]

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/110 (88%), Positives = 105/110 (95%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDHIGG+RLFSCA CDTILTNR ELISTRFTGATGRAFLF++VVNL YSDVQDRV
Sbjct: 1   MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSDVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNCN+KLGW+YEFA E++QRYKEGRVILERALV ES+
Sbjct: 61  MLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESE 110

Source: Ictalurus furcatus

Species: Ictalurus furcatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432096770|gb|ELK27348.1| Protein yippee-like 5 [Myotis davidii]

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/110 (87%), Positives = 105/110 (95%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDHIGG+RLFSCA CDTILTNR ELISTRFTGATGRAFLF++VVNL YS+VQDRV
Sbjct: 19  MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRV 78

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNCN+KLGW+YEFA E++QRYKEGRVILERALV ES+
Sbjct: 79  MLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESE 128

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350582577|ref|XP_003481305.1| PREDICTED: protein yippee-like 5-like isoform 6 [Sus scrofa]

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/110 (87%), Positives = 105/110 (95%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGRIFLDHIGG+RLFSCA CDTILTNR ELISTRFTGATGRAFLF++VVNL YS+VQDRV
Sbjct: 14  MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRV 73

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNCN+KLGW+YEFA E++QRYKEGRVILERALV ES+
Sbjct: 74  MLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESE 123

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|112982986|ref|NP_001037086.1| hemolin-interacting protein [Bombyx mori] gi|40949817|gb|AAR97570.1| hemolin-interacting protein [Bombyx mori]

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/110 (89%), Positives = 103/110 (93%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MG+IFLDHIGG+RLFSCA+CD  LTNR ELISTRFTGATGRAFLFH+VVNL YS+VQDRV
Sbjct: 1   MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRV 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
           MLTGRHMVRDVSCKNC TKLGWVYEFA EE QRYKEGRVILERALVTESD
Sbjct: 61  MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESD 110

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
MGI|MGI:1916937	121	Ypel5 "yippee-like 5 (Drosophi	0.924	0.909	0.872	3.2e-49
FB|FBgn0026749	121	Yippee "Yippee" [Drosophila me	0.924	0.909	0.745	1.2e-42
ZFIN|ZDB-GENE-040426-1220	424	ypel5 "yippee-like 5" [Danio r	0.781	0.219	0.860	5.9e-41
WB|WBGene00015250	485	B0546.3 [Caenorhabditis elegan	0.924	0.226	0.490	6.1e-26
ASPGD|ASPL0000072225	110	AN4539 [Emericella nidulans (t	0.890	0.963	0.433	3.4e-22
UNIPROTKB|A6QLE8	119	YPEL1 "YPEL1 protein" [Bos tau	0.773	0.773	0.510	9e-22
UNIPROTKB|E2RE07	119	YPEL1 "Uncharacterized protein	0.773	0.773	0.510	9e-22
UNIPROTKB|F1RL01	119	YPEL1 "Uncharacterized protein	0.773	0.773	0.510	9e-22
MGI|MGI:1913303	118	Ypel1 "yippee-like 1 (Drosophi	0.823	0.830	0.49	9e-22
RGD|2321291	118	Ypel1 "yippee-like 1 (Drosophi	0.823	0.830	0.49	9e-22

MGI|MGI:1916937 Ypel5 "yippee-like 5 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 96/110 (87%), Positives = 105/110 (95%)

Query:     1 MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
             MGRIFLDHIGG+RLFSCA CDTILTNR ELISTRFTGATGRAFLF++VVNL YS+VQDRV
Sbjct:     1 MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRV 60

Query:    61 MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
             MLTGRHMVRDVSCKNCN+KLGW+YEFA E++QRYKEGRVILERALV ES+
Sbjct:    61 MLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESE 110

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0026749 Yippee "Yippee" [Drosophila melanogaster (taxid:7227)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 82/110 (74%), Positives = 98/110 (89%)

Query:     1 MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
             MGRIFL+H+GG +LF+CA C T LTNR +LISTRFTGATGRA+LF RVVNL +S++Q+RV
Sbjct:     1 MGRIFLEHLGGLKLFNCAQCHTNLTNRSQLISTRFTGATGRAYLFKRVVNLTFSNIQERV 60

Query:    61 MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
             MLTGRHMVRDV CKNC  KLGW+YEFA EE+Q+YKEGRVILE AL+TE++
Sbjct:    61 MLTGRHMVRDVMCKNCGAKLGWMYEFATEESQKYKEGRVILEYALITEAE 110

GO:0008270 "zinc ion binding" evidence=NAS

GO:0046872 "metal ion binding" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040426-1220 ypel5 "yippee-like 5" [Danio rerio (taxid:7955)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 80/93 (86%), Positives = 88/93 (94%)

Query:     1 MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
             MGRIFLDHIGG+RLFSCA CDTILTNR E ISTRFTGATGRAFLF++VVNL YS+VQDRV
Sbjct:     1 MGRIFLDHIGGTRLFSCANCDTILTNRSEQISTRFTGATGRAFLFNKVVNLQYSEVQDRV 60

Query:    61 MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQR 93
             MLTGRHMVRDVSCKNCN+KLGW+YEFA E++QR
Sbjct:    61 MLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQR 93

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

WB|WBGene00015250 B0546.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 297 (109.6 bits), Expect = 6.1e-26, P = 6.1e-26
 Identities = 54/110 (49%), Positives = 74/110 (67%)

Query:     1 MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
             MG  F ++ GG ++F C  CDT L ++  L+ST FTG TG+AFLF  V N+ + +   R 
Sbjct:     1 MGLKFFENAGGLKMFFCTNCDTYLADKGHLVSTSFTGTTGQAFLFKNVTNVKFGESVVRN 60

Query:    61 MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTESD 110
             MLTG H VRDV C++C  +LGW+YE A  + ++YKEG VILER  +TE +
Sbjct:    61 MLTGAHFVRDVFCQSCRAQLGWMYELAPNDNEKYKEGSVILERMNITERE 110

GO:0008340 "determination of adult lifespan" evidence=IMP

ASPGD|ASPL0000072225 AN4539 [Emericella nidulans (taxid:162425)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 46/106 (43%), Positives = 70/106 (66%)

Query:     1 MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
             MG  +  ++  +++F C  C T L +  ++IS  F G  G+A+LF+ VVN+N SD  +R 
Sbjct:     1 MGLSYNVYLTSAKIFGCKQCKTHLADYDDIISRNFRGQHGKAYLFNNVVNINTSDAVERS 60

Query:    61 MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALV 106
             M TGRH+VRD+SC+ C   +GW Y+ A E +++YKEG+ ILE  L+
Sbjct:    61 MTTGRHIVRDISCRQCKETVGWKYDKAYESSEKYKEGKFILEEELL 106

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|A6QLE8 YPEL1 "YPEL1 protein" [Bos taurus (taxid:9913)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 47/92 (51%), Positives = 61/92 (66%)

Query:    13 RLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVS 72
             R +SC  C   L N  ELIS  F G+ GRA+LF+ VVN+     ++RV+LTG H V D+ 
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    73 CKNCNTKLGWVYEFALEETQRYKEGRVILERA 104
             C+NC T LGW YE A E +Q+YKEG+ I+E A
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELA 110

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

UNIPROTKB|E2RE07 YPEL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 47/92 (51%), Positives = 61/92 (66%)

Query:    13 RLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVS 72
             R +SC  C   L N  ELIS  F G+ GRA+LF+ VVN+     ++RV+LTG H V D+ 
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    73 CKNCNTKLGWVYEFALEETQRYKEGRVILERA 104
             C+NC T LGW YE A E +Q+YKEG+ I+E A
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELA 110

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

UNIPROTKB|F1RL01 YPEL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 47/92 (51%), Positives = 61/92 (66%)

Query:    13 RLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVS 72
             R +SC  C   L N  ELIS  F G+ GRA+LF+ VVN+     ++RV+LTG H V D+ 
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    73 CKNCNTKLGWVYEFALEETQRYKEGRVILERA 104
             C+NC T LGW YE A E +Q+YKEG+ I+E A
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELA 110

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

MGI|MGI:1913303 Ypel1 "yippee-like 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 49/100 (49%), Positives = 64/100 (64%)

Query:     5 FLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTG 64
             +L H    R +SC  C   L N  ELIS  F G+ GRA+LF+ VVN+     ++RV+LTG
Sbjct:    13 YLPHC--HRTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTG 70

Query:    65 RHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERA 104
              H V D+ C+NC T LGW YE A E +Q+YKEG+ I+E A
Sbjct:    71 LHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIELA 110

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IMP

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IMP

RGD|2321291 Ypel1 "yippee-like 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 49/100 (49%), Positives = 64/100 (64%)

Query:     5 FLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTG 64
             +L H    R +SC  C   L N  ELIS  F G+ GRA+LF+ VVN+     ++RV+LTG
Sbjct:    13 YLPHC--HRTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTG 70

Query:    65 RHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERA 104
              H V D+ C+NC T LGW YE A E +Q+YKEG+ I+E A
Sbjct:    71 LHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIELA 110

GO:0031641 "regulation of myelination" evidence=IEA;ISO

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q65Z55	YPEL5_CHLAE	No assigned EC number	0.8727	0.9243	0.9090	N/A	N/A
P62699	YPEL5_HUMAN	No assigned EC number	0.8727	0.9243	0.9090	yes	N/A
Q3ZBE7	YPEL5_BOVIN	No assigned EC number	0.8727	0.9243	0.9090	yes	N/A
Q4R4Q6	YPEL5_MACFA	No assigned EC number	0.8636	0.9243	0.9090	N/A	N/A
Q9T096	YIPL6_ARATH	No assigned EC number	0.46	0.8403	0.9433	yes	N/A
P38191	MOH1_YEAST	No assigned EC number	0.3977	0.7394	0.6376	yes	N/A
Q9XZF0	YIPP_DROME	No assigned EC number	0.7454	0.9243	0.9090	yes	N/A
Q9URW3	YIPL_SCHPO	No assigned EC number	0.3921	0.8487	0.7709	yes	N/A
P62700	YPEL5_MOUSE	No assigned EC number	0.8727	0.9243	0.9090	yes	N/A
Q5RDU7	YPEL5_PONAB	No assigned EC number	0.8727	0.9243	0.9090	yes	N/A
O44440	YPL2_CAEEL	No assigned EC number	0.5188	0.8655	0.6397	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	2e-56

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  170 bits (432), Expect = 2e-56
 Identities = 59/109 (54%), Positives = 78/109 (71%)

Query: 1   MGRIFLDHIGGSRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRV 60
           MGR+F+ ++ G R++SC  C T L    ++IS  FTG  GRA+LF+RVVN+   + +DR 
Sbjct: 1   MGRLFVVYLTGGRIYSCKHCKTHLALHSDIISKSFTGRHGRAYLFNRVVNVVEGEPEDRQ 60

Query: 61  MLTGRHMVRDVSCKNCNTKLGWVYEFALEETQRYKEGRVILERALVTES 109
           MLTG H VRD+ C  C T LGW YEFA EE+Q+YKEG+ ILERAL+T+ 
Sbjct: 61  MLTGLHTVRDIFCVGCGTTLGWKYEFAYEESQKYKEGKFILERALITKI 109

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG3399|consensus	122		100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	99.98
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	95.89
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	94.69
PRK00222	142	methionine sulfoxide reductase B; Provisional	94.5
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	94.29
PRK05508	119	methionine sulfoxide reductase B; Provisional	93.99
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	92.23
KOG0856|consensus	146		90.9
PF14976	150	FAM72: FAM72 protein	90.83
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	90.75
COG0229	140	Conserved domain frequently associated with peptid	85.56

>KOG3399|consensus

Probab=100.00  E-value=1.1e-54  Score=315.15  Aligned_cols=118  Identities=48%  Similarity=0.842  Sum_probs=115.3

Q ss_pred             CcceeeeccCCc-ceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCc
Q psy6706           1 MGRIFLDHIGGS-RLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTK   79 (119)
Q Consensus         1 MGr~f~~yl~~~-~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~   79 (119)
                      |||+|.++|++. +.|+|++|+||||.++||||++|+|++|+||||++|+||..|+.|+|.|+||+|+|+||+|+.|++.
T Consensus         1 mgR~F~~~l~~~~~~y~C~~C~thla~~~dliSksf~gr~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~~   80 (122)
T KOG3399|consen    1 MGRLFEAMLEANHRLYSCAHCKTHLARHDDLISKSFRGRTGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGTG   80 (122)
T ss_pred             CcchHHHHhccCCceEeccCCcccccchhhccccccccCCCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCCC
Confidence            999999999985 7999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeEEEecccCCCeecCeEEEEeeeeeccccccccCCC
Q psy6706          80 LGWVYEFALEETQRYKEGRVILERALVTESDVKILDLGS  118 (119)
Q Consensus        80 lGWkY~~A~e~sqkYKEGkfILE~~~i~~~~~~~~~~~~  118 (119)
                      |||||+.|||+||||||||||||+++|.+++||+...++
T Consensus        81 ~GWkYe~a~e~sQkyKEGk~ilE~~~i~~~~g~~~~~~~  119 (122)
T KOG3399|consen   81 LGWKYEHAYEKSQKYKEGKFILELAEIFKPEGWDLEVGA  119 (122)
T ss_pred             cceeeeeccCchhhhcCcchHHHHHHhcCCCCchhhcCC
Confidence            999999999999999999999999999999999988765

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=99.98  E-value=3.6e-33  Score=192.33  Aligned_cols=89  Identities=51%  Similarity=0.952  Sum_probs=84.8

Q ss_pred             eEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEecccc----EEeeeeeeccCCCcceeeEEEecc
Q psy6706          14 LFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGR----HMVRDVSCKNCNTKLGWVYEFALE   89 (119)
Q Consensus        14 ~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~----H~v~dI~C~~C~~~lGWkY~~A~e   89 (119)
                      +|.|++|++||+++++|+|  |+|+.|+||||+   ||..+++++|.|+||.    |+|+||+|++|++.|||||++|++
T Consensus         2 vf~C~~C~t~l~ds~~lvs--~~g~~~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~   76 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVS--FHGREGKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPE   76 (96)
T ss_pred             EEECCCCCCCcCCHHHhee--cCCCCccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCH
Confidence            7999999999999999999  999999999998   7777888999999999    999999999999999999999999


Q ss_pred             cCCCeecCeEEEEeeeeec
Q psy6706          90 ETQRYKEGRVILERALVTE  108 (119)
Q Consensus        90 ~sqkYKEGkfILE~~~i~~  108 (119)
                      + |+||||+||||++.|..
T Consensus        77 ~-~~~k~g~file~~~i~~   94 (96)
T PF03226_consen   77 E-QKYKEGKFILEKASISS   94 (96)
T ss_pred             h-HhhhCCEEEEEhhHEEE
Confidence            9 99999999999998863

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=95.89  E-value=0.0034  Score=45.49  Aligned_cols=88  Identities=13%  Similarity=0.188  Sum_probs=57.6

Q ss_pred             eEEccCCCCCcCCCCCeeeecccC--CCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEEEecccC
Q psy6706          14 LFSCAACDTILTNRRELISTRFTG--ATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEFALEET   91 (119)
Q Consensus        14 ~y~C~~C~thLa~~~~liSk~f~G--~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~~A~e~s   91 (119)
                      .+-|++|.+.++..+||-.-.-+.  --.++  |...+.+...|.+.....-+.+....|+|.+|+..+|-.+..---+=
T Consensus         4 ~llC~kC~~~~C~~~DIr~ie~~hhv~v~p~--F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m~yk~~~L   81 (123)
T PF11648_consen    4 KLLCRKCKKFACSGSDIRKIENSHHVVVDPE--FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMMKYKGVEL   81 (123)
T ss_dssp             EEEETTTTCEEEEGGGEEEETTTEEEE-SHH--HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEEEETTEEE
T ss_pred             EEECCCCCceeEchhheEEecCCcEEEcCcc--ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhheEECCccc
Confidence            488999999999999987652110  00112  22444455555553344557789999999999999998776544444


Q ss_pred             CCeecCeEEEEe
Q psy6706          92 QRYKEGRVILER  103 (119)
Q Consensus        92 qkYKEGkfILE~  103 (119)
                      .-.|.-.|+++.
T Consensus        82 P~L~iksfvv~~   93 (123)
T PF11648_consen   82 PCLKIKSFVVEL   93 (123)
T ss_dssp             EEE-GGGEEEEE
T ss_pred             cEEEeeeeeeee
Confidence            566677777443

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

>TIGR00357 methionine-R-sulfoxide reductase

Probab=94.69  E-value=0.038  Score=41.16  Aligned_cols=67  Identities=19%  Similarity=0.485  Sum_probs=42.0

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeee-ccccCCCccceEeccccEEeeeeeeccCCCcceeeEEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRV-VNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEF   86 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v-~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~~   86 (119)
                      .-+|.|+.|+++|-++++    -|....|=.-.+..+ -|. +...+|..  -|+.. ..|.|.+|+.+||--...
T Consensus        38 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~-V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~D  105 (134)
T TIGR00357        38 EGIYVDITCGEPLFSSED----KFDSGCGWPSFYKPISEEV-VAYERDES--HGMIR-TEVRCRNCDAHLGHVFDD  105 (134)
T ss_pred             CeEEEccCCCCccccccc----hhcCCCCCcCcCcccCCCc-eEEeecCC--CCcEE-EEEEecCCCCccCcccCC
Confidence            468999999999987765    355555544444444 122 22233322  24333 579999999999965543

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=94.50  E-value=0.031  Score=41.98  Aligned_cols=85  Identities=19%  Similarity=0.380  Sum_probs=49.2

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEEEecccC
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEFALEET   91 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~~A~e~s   91 (119)
                      .-+|.|+.|+++|=++++    -|....|=.-.+..+-.-.+...+|+  .-|+. =..|.|..|+.+||-.....-  .
T Consensus        41 ~G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~V~~~~D~--s~gm~-RtEv~C~~Cg~HLGHVF~DGP--~  111 (142)
T PRK00222         41 KGIYVCIVCGEPLFSSDT----KFDSGCGWPSFTKPIDEEAIRELRDT--SHGMV-RTEVRCANCDSHLGHVFPDGP--K  111 (142)
T ss_pred             CeEEEecCCCchhcCCcc----cccCCCCCcCcCcccCCCceEEeecc--CCCce-EEEEEeCCCCCccCcccCCCC--C
Confidence            568999999999988754    46555665554554421122222222  11222 257999999999997665432  2


Q ss_pred             CCeecCeEEEEeeeee
Q psy6706          92 QRYKEGRVILERALVT  107 (119)
Q Consensus        92 qkYKEGkfILE~~~i~  107 (119)
                      +.  -=+|-|.-+.|.
T Consensus       112 pt--g~RyCINs~sL~  125 (142)
T PRK00222        112 PT--GLRYCINSASLK  125 (142)
T ss_pred             CC--CCEeeeceeeEE
Confidence            21  115555555444

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=94.29  E-value=0.031  Score=41.03  Aligned_cols=71  Identities=21%  Similarity=0.475  Sum_probs=42.5

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEEEecc
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEFALE   89 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~~A~e   89 (119)
                      .-+|.|+.|+++|=+++.    -|....|=.-.+..+..-.+...+|..  -|+ .-..|.|.+|+.+||=-......
T Consensus        35 ~G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~v~~~~D~s--~g~-~R~Ev~C~~Cg~HLGHVF~DGp~  105 (124)
T PF01641_consen   35 EGIYVCAVCGTPLFSSDT----KFDSGCGWPSFWQPIPGDAVKEREDFS--HGM-VRTEVRCARCGSHLGHVFDDGPP  105 (124)
T ss_dssp             SEEEEETTTS-EEEEGGG----EETSSSSSSEESSCSSTTSEEEEEEEC--TSS-EEEEEEETTTCCEEEEEESTSST
T ss_pred             CEEEEcCCCCCccccCcc----cccCCcCCccccCcCChHHEEEecccc--CCc-eEEEEEecCCCCccccEeCCCCC
Confidence            468999999999976653    355555554444443321222222222  133 34579999999999976654443

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=93.99  E-value=0.065  Score=39.24  Aligned_cols=64  Identities=22%  Similarity=0.510  Sum_probs=42.4

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYE   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~   85 (119)
                      .-+|.|+.|+++|=++++    -|....|=.-.+..+-|. +...+|..   |  .=..|.|.+|+.+||--..
T Consensus        31 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~-v~~~~D~~---~--~RtEv~C~~C~~HLGHVF~   94 (119)
T PRK05508         31 KGTYVCKQCGAPLYRSED----KFKSGCGWPSFDDEIKGA-VKRIPDAD---G--RRTEIVCANCGGHLGHVFE   94 (119)
T ss_pred             CeEEEecCCCCccccccc----cccCCCCCcccCcccccc-eEEEecCC---C--cEEEEEeCCCCCccCcccC
Confidence            468999999999987764    466566654445554332 23333433   2  2467999999999995543

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=92.23  E-value=0.12  Score=42.67  Aligned_cols=64  Identities=23%  Similarity=0.551  Sum_probs=42.7

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYE   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~   85 (119)
                      .-+|.|+.|+++|=++++    -|....|=.-.++.+-|-.. ..++.   .|+  =..|.|.+|+.+||--..
T Consensus        34 ~G~y~c~~c~~~LF~s~~----Kf~sg~GWPsF~~~~~~~~~-~~~d~---~~~--R~Ev~c~~c~~HLGHvF~   97 (283)
T PRK05550         34 KGVYLCRRCGAPLFRSED----KFNSGCGWPSFDDEIPGAVK-RLPDA---DGR--RTEIVCANCGAHLGHVFE   97 (283)
T ss_pred             CcEEEcCCCCchhcCChh----hccCCCCCcCcCcccCCccE-EEEcC---CCc--eEEEEecCCCCccCcccC
Confidence            468999999999988654    46556665444665544322 22222   233  478999999999996654

>KOG0856|consensus

Probab=90.90  E-value=0.33  Score=36.71  Aligned_cols=66  Identities=24%  Similarity=0.518  Sum_probs=37.7

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEe-ccccEEeeeeeeccCCCcceeeEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVM-LTGRHMVRDVSCKNCNTKLGWVYE   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m-~TG~H~v~dI~C~~C~~~lGWkY~   85 (119)
                      +-+|.|+.|.++|-.+.-    -|....|=--.|+.+-   .|....+.. .-|.| =.+|.|..|+.+||--.+
T Consensus        52 ~GvY~C~~C~~pLykS~t----KfdsgcGWPAF~e~i~---~gaI~r~~d~s~~~~-R~Ev~Ca~C~~HLGHVF~  118 (146)
T KOG0856|consen   52 EGVYVCAGCGTPLYKSTT----KFDSGCGWPAFFEAIG---PGAITRTPDNSRGGR-RTEVSCATCGGHLGHVFK  118 (146)
T ss_pred             CceEEEeecCCccccccc----cccCCCCCchhhhccC---CCceeeccccCCCCc-ceEEEEeecCCceeeeec
Confidence            469999999999977643    4554445433333321   111111111 01112 357999999999995543

>PF14976 FAM72: FAM72 protein

Probab=90.83  E-value=0.49  Score=35.93  Aligned_cols=63  Identities=24%  Similarity=0.536  Sum_probs=40.7

Q ss_pred             ceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccC----CCccceEecccc--------EEeeeeeeccCCCcc
Q psy6706          13 RLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNY----SDVQDRVMLTGR--------HMVRDVSCKNCNTKL   80 (119)
Q Consensus        13 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~----g~~e~r~m~TG~--------H~v~dI~C~~C~~~l   80 (119)
                      .+..|+.|.+-|+...-           ||.|..+ .|+.+    -||....-.+|.        =.++|+-|.+|+..|
T Consensus        14 ~~L~C~~C~~~l~~RgM-----------kAvLLad-t~ieLySTD~~P~~~v~~vg~~y~t~~C~C~~~d~aC~~CGn~v   81 (150)
T PF14976_consen   14 YILCCKFCDQVLCNRGM-----------KAVLLAD-TNIELYSTDIPPTNCVDFVGSCYFTRTCKCKIQDIACLGCGNIV   81 (150)
T ss_pred             EEEECCCCCchhccchh-----------hheeecC-CccEEEecCCCCcccccccccceecccCceEeeeeeeecCCCee
Confidence            46889999998876432           4555554 33332    122222223333        389999999999999


Q ss_pred             eeeEEEe
Q psy6706          81 GWVYEFA   87 (119)
Q Consensus        81 GWkY~~A   87 (119)
                      |+.+...
T Consensus        82 GYhV~~P   88 (150)
T PF14976_consen   82 GYHVVVP   88 (150)
T ss_pred             eeEEEEE
Confidence            9888764

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=90.75  E-value=0.26  Score=43.69  Aligned_cols=68  Identities=10%  Similarity=0.172  Sum_probs=42.6

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEF   86 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~~   86 (119)
                      +-+|.|+.|+++|=++++    -|....|=.-.+..+-+-.+...+|.  .-|++. ..|.|.+|+.+||-....
T Consensus       416 ~G~y~c~~c~~pLf~s~~----Kf~sg~GWPsF~~~i~~~~v~~~~d~--s~g~~R-~Ev~c~~c~~HLGHvf~d  483 (521)
T PRK14018        416 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKVVTEHDDF--SYNMRR-TEVRSRAADSHLGHVFPD  483 (521)
T ss_pred             CEEEEecCCCCccccCcc----cccCCCCCcccCcccCcCceEEeecc--CCCceE-EEEEECCCCCcCCcccCC
Confidence            568999999999988753    45555555444444322222222232  123433 479999999999966644

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=85.56  E-value=1.4  Score=33.21  Aligned_cols=65  Identities=23%  Similarity=0.469  Sum_probs=38.9

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceee
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWV   83 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWk   83 (119)
                      .-+|.|+.|+.+|=.+++=    |....|=--.+.-+..-.+...+|+  .-|++. ..|.|.+|+++||--
T Consensus        40 ~GiY~c~~cg~pLF~S~~K----fdSgcGWPSF~~pi~~~~I~~~~D~--S~gM~R-tEVrc~~c~sHLGHV  104 (140)
T COG0229          40 KGIYVCIVCGEPLFSSEDK----FDSGCGWPSFTKPISPDAITYKEDR--SHGMVR-TEVRCANCDSHLGHV  104 (140)
T ss_pred             CceEEeecCCCcccccccc----ccCCCCCccccccCCcccceEeecc--CCCcEE-EEEEecCCCCccccc
Confidence            4689999999999877653    4434443323333322222233332  223333 469999999999943

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
3eqt_A	145	ATP-dependent RNA helicase DHX58; innate immunity,	94.86
3ga3_A	133	Interferon-induced helicase C domain-containing pr	94.11
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	93.29
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	93.15
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	92.84
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	92.72
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	92.27
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	92.03
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	91.93
3lrr_A	121	Probable ATP-dependent RNA helicase DDX58; innate	91.71
4a2v_A	131	RIG-I, retinoic acid inducible protein I; hydrolas	91.32
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	88.22
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	87.88
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	86.91
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	85.94

>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A

Probab=94.86  E-value=0.0069  Score=44.56  Aligned_cols=96  Identities=16%  Similarity=0.207  Sum_probs=57.8

Q ss_pred             ccCCcceEEccCCCCCcCCCCCeeeec--ccCCCcceEEEeeeccccCCCcc-ceEeccccEEeeeeeeccCCCcceeeE
Q psy6706           8 HIGGSRLFSCAACDTILTNRRELISTR--FTGATGRAFLFHRVVNLNYSDVQ-DRVMLTGRHMVRDVSCKNCNTKLGWVY   84 (119)
Q Consensus         8 yl~~~~~y~C~~C~thLa~~~~liSk~--f~G~~G~AyLf~~v~Nv~~g~~e-~r~m~TG~H~v~dI~C~~C~~~lGWkY   84 (119)
                      +.++.-.+-|++|.+.++..+||-.-.  -+=.-+++  |...+.+..++.. .+. ..+-..-..|.|.+|+..+|-..
T Consensus         7 ~~~s~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~-f~d~~~~g~I~C~~Cgq~WG~~m   83 (145)
T 3eqt_A            7 FPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKV-FKDWKPGGVISCRNCGEVWGLQM   83 (145)
T ss_dssp             CCGGGCEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSC-CSSEEEEEEEEETTTCCEEEEEE
T ss_pred             CCchheEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcc-cccccCCcEEEchhhChhhHhhE
Confidence            345556799999999999999974431  10000011  0111222111111 111 23345778899999999988777


Q ss_pred             EEecccCCCeecCeEEEEeeee
Q psy6706          85 EFALEETQRYKEGRVILERALV  106 (119)
Q Consensus        85 ~~A~e~sqkYKEGkfILE~~~i  106 (119)
                      ..---+=.-.|.-.|+||...-
T Consensus        84 ~yk~~~LP~LkIksFVve~~~g  105 (145)
T 3eqt_A           84 IYKSVKLPVLKVRSMLLETPQG  105 (145)
T ss_dssp             EETTEEEEEECGGGEEEEETTE
T ss_pred             EeccccCceEeEEEEEEEcCCC
Confidence            6555556678889999987544

>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A

Probab=94.11  E-value=0.039  Score=39.95  Aligned_cols=91  Identities=10%  Similarity=0.151  Sum_probs=56.9

Q ss_pred             cCCcceEEccCCCCCcCCCCCeeee--cccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEEE
Q psy6706           9 IGGSRLFSCAACDTILTNRRELIST--RFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEF   86 (119)
Q Consensus         9 l~~~~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~~   86 (119)
                      .++.-.+-|++|.+.++..+||-.-  +-.=.-+++  |...+.+...+...+. ..+-.+-..|.|. |+..+|-....
T Consensus         7 ~~s~vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~y   82 (133)
T 3ga3_A            7 NPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVRENKALQKK-CADYQINGEIICK-CGQAWGTMMVH   82 (133)
T ss_dssp             CGGGEEEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEE
T ss_pred             CcceEEEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEecCCCCccch-hccccCCceEEEe-cCChhhhhEEe
Confidence            3444569999999999999997433  111011111  1222333322222233 4567788899999 99998877655


Q ss_pred             ecccCCCeecCeEEEEe
Q psy6706          87 ALEETQRYKEGRVILER  103 (119)
Q Consensus        87 A~e~sqkYKEGkfILE~  103 (119)
                      ---+=.-.|.-.|+||.
T Consensus        83 k~~~LP~LkIksFVve~   99 (133)
T 3ga3_A           83 KGLDLPCLKIRNFVVVF   99 (133)
T ss_dssp             TTEEEEEECGGGEEEEE
T ss_pred             ccccCceEEEEEEEEEc
Confidence            44445678888888886

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=93.29  E-value=0.062  Score=38.55  Aligned_cols=65  Identities=15%  Similarity=0.364  Sum_probs=37.8

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVY   84 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY   84 (119)
                      .-+|.|+.|.++|=++++=    |....|=.-.++.+-.-.+-..+++   .+.. ...|.|++|+.+||=-.
T Consensus        18 ~G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A           18 PGVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             CEEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred             CEEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence            3689999999999887653    4444443222332211111111221   1221 35799999999999543

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=93.15  E-value=0.04  Score=40.46  Aligned_cols=67  Identities=15%  Similarity=0.270  Sum_probs=41.7

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEF   86 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~~   86 (119)
                      .-+|.|+.|+++|=++++    -|....|=.-.+..+-+ .+...+|+.  -|+. =..|.|..|+.+||--...
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D  106 (144)
T 3e0o_A           40 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMI-RTEVRSRTADSHLGHVFND  106 (144)
T ss_dssp             SEEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSC-EEEEEETTTCCEEEEEESC
T ss_pred             CEEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCce-EEEEEcCCCCCccCCccCC
Confidence            468999999999877664    35544554443444433 222333322  2443 2479999999999966543

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=92.84  E-value=0.053  Score=39.87  Aligned_cols=68  Identities=10%  Similarity=0.180  Sum_probs=40.4

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEF   86 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~~   86 (119)
                      .-+|.|+.|+++|=++++    -|....|=.-.+..+-.-.+...+|+.  -|+. =..|.|+.|+.+||--...
T Consensus        41 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D  108 (146)
T 3hcg_A           41 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--YNMR-RTEVRSHAADSHLGHVFPD  108 (146)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSGGGEEEEEEEE--TTEE-EEEEEETTTCCEEEEEESC
T ss_pred             CEEEEecCCCcccccCcc----cccCCCCChhhccccCCCceEEeecCC--CCcE-EEEEEeCCCCCccCceeCC
Confidence            468999999999877653    355445543333333211111223322  1333 3579999999999966543

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=92.27  E-value=0.053  Score=40.61  Aligned_cols=67  Identities=22%  Similarity=0.516  Sum_probs=41.0

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYE   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~   85 (119)
                      .-+|.|+.|+++|=++++    -|....|=.-.+..+-+-.+...+|..  -|+ .-..|.|..|+.+||=-..
T Consensus        71 ~GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm-~RtEV~C~~Cg~HLGHVF~  137 (164)
T 3cxk_A           71 AGIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGM-TRVEVRCNQCGAHLGHVFE  137 (164)
T ss_dssp             SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGC-CEEEEEETTTCCEEEEEES
T ss_pred             CeEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCc-EEEEEEeCCCCCccCcccC
Confidence            468999999999877653    355445554444433221222223321  233 3457999999999996554

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=92.03  E-value=0.046  Score=38.22  Aligned_cols=65  Identities=17%  Similarity=0.379  Sum_probs=38.4

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVY   84 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY   84 (119)
                      .-+|.|+.|+++|=++++    -|....|=.-.+..+-.-.+...++.   .+ +.-..|.|..|+.+||--.
T Consensus        11 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~---~~-~~RtEV~C~~C~~HLGHVF   75 (105)
T 3mao_A           11 PGVYVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEH---NR-SEALKVSCGKCGNGLGHEF   75 (105)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECT---TS-TTEEEEEETTTCCEEEEEE
T ss_pred             CEEEEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecC---CC-CCEEEEEeCCCCCccCccc
Confidence            468999999999876653    34444454333333311111111121   12 2346899999999999655

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=91.93  E-value=0.13  Score=37.75  Aligned_cols=80  Identities=13%  Similarity=0.268  Sum_probs=54.7

Q ss_pred             cceEEccCCCCCcCCCCCe----------eeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeec--cCCCc
Q psy6706          12 SRLFSCAACDTILTNRREL----------ISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCK--NCNTK   79 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~l----------iSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~--~C~~~   79 (119)
                      .-.+.|++|.+.+++.+||          +.+.|.          ..+.+..-+. .+. .-+..+-..|+|.  +|+..
T Consensus        25 ~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~   92 (145)
T 2qfd_A           25 NKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHD   92 (145)
T ss_dssp             CCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSS-CCC-CSSEEEEEEEEECSTTTCCE
T ss_pred             ceEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCcc-cch-hhceeCCceEEeCCcccCcc
Confidence            4569999999999999998          344554          1112221111 111 3445677899999  99999


Q ss_pred             ceeeEEEecccCCCeecCeEEEEe
Q psy6706          80 LGWVYEFALEETQRYKEGRVILER  103 (119)
Q Consensus        80 lGWkY~~A~e~sqkYKEGkfILE~  103 (119)
                      +|-....---+-.-.|.-.|+||.
T Consensus        93 WG~~m~yk~~~lP~LkIksFVv~~  116 (145)
T 2qfd_A           93 WGIHVKYKTFEIPVIKIESFVVED  116 (145)
T ss_dssp             EEEEEEETTEEEEEECGGGEEEEC
T ss_pred             hhceEEEccccCceEEEEEEEEEe
Confidence            997766544456678888999985

>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*

Probab=91.71  E-value=0.08  Score=37.66  Aligned_cols=89  Identities=13%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             CcceEEccCCCCCcCCCCCeeee--cccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeec--cCCCcceeeEEE
Q psy6706          11 GSRLFSCAACDTILTNRRELIST--RFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCK--NCNTKLGWVYEF   86 (119)
Q Consensus        11 ~~~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~--~C~~~lGWkY~~   86 (119)
                      ++..+-|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+...+. .+. .-+-++-..|.|.  +|+..+|-....
T Consensus         2 ~~~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~y   77 (121)
T 3lrr_A            2 ENKKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKY   77 (121)
T ss_dssp             CCEEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEE
T ss_pred             CCEEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEe
Confidence            45678999999999999997432  1110001111  11222212222 222 2355688899999  999999877665


Q ss_pred             ecccCCCeecCeEEEEe
Q psy6706          87 ALEETQRYKEGRVILER  103 (119)
Q Consensus        87 A~e~sqkYKEGkfILE~  103 (119)
                      ---+=.-.|.-.|+||.
T Consensus        78 k~~~LP~LkI~sfvve~   94 (121)
T 3lrr_A           78 KTFEIPVIKIESFVVED   94 (121)
T ss_dssp             TTEEEEEECGGGEEEEE
T ss_pred             ccccCceEEEEEEEEEe
Confidence            54456678888999887

>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A

Probab=91.32  E-value=0.13  Score=37.02  Aligned_cols=88  Identities=14%  Similarity=0.249  Sum_probs=52.0

Q ss_pred             cceEEccCCCCCcCCCCCeeee--cccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeec--cCCCcceeeEEEe
Q psy6706          12 SRLFSCAACDTILTNRRELIST--RFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCK--NCNTKLGWVYEFA   87 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~--~C~~~lGWkY~~A   87 (119)
                      +..+-|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+...+. .+. .-+-++-..|.|.  +|+..+|-....-
T Consensus         5 ~~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk   80 (131)
T 4a2v_A            5 QKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYL   80 (131)
T ss_dssp             CCEEEETTTCCEEEEGGGEEEETTTEEEECSSGG--GGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEET
T ss_pred             ceEEEccCCCeeEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeec
Confidence            4568999999999999997332  1110000110  11111211111 111 2345678889999  9999988665543


Q ss_pred             ccc-CCCeecCeEEEEe
Q psy6706          88 LEE-TQRYKEGRVILER  103 (119)
Q Consensus        88 ~e~-sqkYKEGkfILE~  103 (119)
                      --+ =.-.|.-.|+||.
T Consensus        81 ~~~~LP~LkIksFVve~   97 (131)
T 4a2v_A           81 TFDNLPVIKIKSFVMES   97 (131)
T ss_dssp             TEEEEEEECGGGEEECC
T ss_pred             CcccCceEeEEEEEEEe
Confidence            333 4567888888876

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=88.22  E-value=0.11  Score=38.38  Aligned_cols=68  Identities=26%  Similarity=0.524  Sum_probs=41.2

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEF   86 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~~   86 (119)
                      .-+|.|+.|+++|=++++    -|....|=.-.+..+-.-.+...+|+.  -|+. =..|.|..|+.+||--...
T Consensus        59 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D  126 (151)
T 2k8d_A           59 DGIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRS--LGMV-RCEVLCARCDAHLGHVFDD  126 (151)
T ss_dssp             CSEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBT--TSSC-EEEEEETTEEEEEEEEEEC
T ss_pred             CEEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCC--CCce-EEEEEeCCCCCcCCcccCC
Confidence            468999999999877653    365555644434443221222223321  1332 3569999999999966543

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=87.88  E-value=0.11  Score=38.62  Aligned_cols=67  Identities=21%  Similarity=0.515  Sum_probs=38.5

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYE   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~   85 (119)
                      .-+|.|+.|+++|=++++    -|....|=--.+..+-.-.+...+|..  -|+. =..|.|..|+.+||--..
T Consensus        48 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~  114 (154)
T 3hcj_A           48 DGVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFP  114 (154)
T ss_dssp             SEEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEES
T ss_pred             CEEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccC
Confidence            468999999999976654    344444443333333111111112211  1332 257999999999996554

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=86.91  E-value=0.17  Score=37.08  Aligned_cols=85  Identities=19%  Similarity=0.369  Sum_probs=45.4

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeecccc--------CCCccceEeccccEEeeeeeeccCCCcceee
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLN--------YSDVQDRVMLTGRHMVRDVSCKNCNTKLGWV   83 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~--------~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWk   83 (119)
                      .-+|.|+.|+++|=++++    -|....|=.-.+ +.+++.        +...+|+  .-|+. =..|.|..|+.+||=-
T Consensus        35 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~-~pi~~~~~~~~~~~V~~~~D~--s~gm~-RtEV~C~~Cg~HLGHV  106 (143)
T 2l1u_A           35 TGMYHCVCCDSPLFSSEK----KYCSGTGWPSFS-EAYGSKGSDESHTGILRRLDT--SLGCP-RMEVVCKQCEAHLGHV  106 (143)
T ss_dssp             CEEEEESSSSCEEEEGGG----BCTTTTCCSBBS-SCCSCCTTHHHHTCEEEEEEC--TTSSC-EEEEEESSSCCCCEEE
T ss_pred             CeEEEeCCCCCeeecCcc----cccCCCCChhhc-hhhccccccCCCCceEEeecc--cCCce-EEEEEECCCCCcCCcc
Confidence            468999999999877654    354444432222 222211        1111121  11332 3579999999999966


Q ss_pred             EEEecccCCCeecCeEEEEeeeeec
Q psy6706          84 YEFALEETQRYKEGRVILERALVTE  108 (119)
Q Consensus        84 Y~~A~e~sqkYKEGkfILE~~~i~~  108 (119)
                      ....  +  +=+==+|-|.-+.|.-
T Consensus       107 F~DG--P--~ptg~RyCINS~sL~F  127 (143)
T 2l1u_A          107 FPDG--P--KPTGQRFCINSVALKF  127 (143)
T ss_dssp             ECCS--S--CGGGCEEEECCTTEEE
T ss_pred             cCCC--C--CCCCCEEEeeeeEEec
Confidence            5432  2  1111256665555543

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=85.94  E-value=0.29  Score=39.85  Aligned_cols=67  Identities=13%  Similarity=0.190  Sum_probs=40.0

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYE   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~   85 (119)
                      .-+|.|+.|+++|=++++    -|....|=.-.+..+-.-.+...+|+.  -|+. =..|.|..|+.+||--..
T Consensus       207 ~G~Y~c~~cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~D~s--~gm~-RtEv~c~~c~~HLGHVF~  273 (313)
T 3e0m_A          207 EGIYVDITTGEPLFFAKD----KFASGCGWPSFSRPLSKELIHYYKDLS--HGME-RIEVRSRSGSAHLGHVFT  273 (313)
T ss_dssp             SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSGGGEEEEEECC--TTCC-EEEEEESSSCCEEEEEES
T ss_pred             CeEEEecCCCccccCCCc----cccCCCCCcccCcccCCCceEEeecCC--CCcE-EEEEECCCCCCccCcccC
Confidence            468999999999876653    455555544433333111111222322  1443 357999999999996554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	91.75
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	90.91

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.75  E-value=0.043  Score=38.39  Aligned_cols=66  Identities=14%  Similarity=0.252  Sum_probs=39.1

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYE   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~   85 (119)
                      .-+|.|+.|+++|=++++    .|.-..|=.-.++.+-+-.. ..+|.   ++.-.=..|.|.+|+.+||=-..
T Consensus        39 ~G~Y~C~~C~~pLF~S~~----KfdSg~GWPSF~~~i~~~v~-~~~D~---s~gm~R~Ev~C~~Cg~HLGHVF~  104 (143)
T d1xm0a1          39 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEEEVE-EKLDT---SHGMIRTEVRSRTADSHLGHVFN  104 (143)
T ss_dssp             SEEEEESSTTCEEEETTT----CCCCCSSSCCEEESCCCSEE-EECCC---CTTCCCCEEEESSCTTCCCEEEE
T ss_pred             CceEEeccccchhhhhhh----hhccCCccceeecccccceE-EEecC---CCCccccceEecCCCCccCccCC
Confidence            468999999999977765    25545554333443322111 11121   11112357999999999995553

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=90.91  E-value=0.039  Score=38.61  Aligned_cols=68  Identities=10%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             cceEEccCCCCCcCCCCCeeeecccCCCcceEEEeeeccccCCCccceEeccccEEeeeeeeccCCCcceeeEEE
Q psy6706          12 SRLFSCAACDTILTNRRELISTRFTGATGRAFLFHRVVNLNYSDVQDRVMLTGRHMVRDVSCKNCNTKLGWVYEF   86 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~v~dI~C~~C~~~lGWkY~~   86 (119)
                      .-+|.|+.|+++|=.+++    -|....|=.-.++.+-+-.+....+.  .-|+.. ..|.|.+|+.+||=-...
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~d~--s~gm~R-~Ev~C~~Cg~HLGHVF~D  107 (144)
T d1l1da_          40 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDF--SFNMRR-TEVRSRAADSHLGHVFPD  107 (144)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSTTSEEEEEEC--CTTSCE-EEEEETTTCCEEEEEESC
T ss_pred             cCceEeccccceeeehhh----cccCCccceeeccccccccccceecc--cccccc-eeeEecCCCCccCcccCC
Confidence            468999999999976654    25444444333333322222222221  112222 379999999999965543